Query 046899
Match_columns 407
No_of_seqs 430 out of 3991
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 05:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0264 Nucleosome remodeling 100.0 1.7E-48 3.6E-53 334.9 24.7 334 7-388 11-413 (422)
2 KOG0271 Notchless-like WD40 re 100.0 2.1E-47 4.5E-52 320.9 20.4 309 35-407 114-461 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-44 3.5E-49 307.1 19.5 282 34-377 173-458 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-44 3.4E-49 307.3 15.8 269 80-407 172-440 (459)
5 KOG0271 Notchless-like WD40 re 100.0 1.1E-42 2.4E-47 292.4 19.9 269 78-407 110-419 (480)
6 KOG0315 G-protein beta subunit 100.0 9.5E-39 2.1E-43 254.4 19.5 293 47-405 12-308 (311)
7 KOG0286 G-protein beta subunit 100.0 3.2E-38 6.8E-43 257.0 20.7 271 77-377 49-343 (343)
8 KOG0263 Transcription initiati 100.0 1.8E-38 4E-43 290.2 18.4 283 68-381 363-651 (707)
9 KOG0319 WD40-repeat-containing 100.0 1E-37 2.2E-42 282.7 21.3 210 166-407 379-599 (775)
10 KOG0273 Beta-transducin family 100.0 3E-37 6.5E-42 266.3 20.1 309 35-407 177-503 (524)
11 KOG0295 WD40 repeat-containing 100.0 2.3E-37 4.9E-42 259.0 15.7 272 74-406 99-385 (406)
12 KOG0279 G protein beta subunit 100.0 3.3E-36 7.1E-41 243.8 20.0 233 76-407 8-243 (315)
13 KOG0284 Polyadenylation factor 100.0 2.8E-37 6.1E-42 262.0 14.3 284 34-380 94-381 (464)
14 KOG0263 Transcription initiati 100.0 2.3E-36 5.1E-41 276.4 20.5 266 20-324 363-654 (707)
15 KOG0291 WD40-repeat-containing 100.0 5.1E-35 1.1E-39 265.8 28.0 344 29-407 89-488 (893)
16 KOG0265 U5 snRNP-specific prot 100.0 2.2E-36 4.8E-41 247.1 16.0 270 76-407 40-318 (338)
17 KOG0316 Conserved WD40 repeat- 100.0 2.1E-35 4.5E-40 233.6 18.7 274 71-406 5-279 (307)
18 KOG0279 G protein beta subunit 100.0 3.8E-34 8.3E-39 231.8 22.3 273 47-379 30-313 (315)
19 KOG0273 Beta-transducin family 100.0 2.2E-34 4.7E-39 248.7 21.5 276 38-379 237-523 (524)
20 KOG0277 Peroxisomal targeting 100.0 4.7E-34 1E-38 228.3 21.0 241 70-407 47-288 (311)
21 KOG0295 WD40 repeat-containing 100.0 1.3E-34 2.7E-39 242.6 17.7 278 38-378 110-405 (406)
22 KOG0285 Pleiotropic regulator 100.0 1.9E-34 4E-39 241.1 17.7 277 72-380 140-440 (460)
23 KOG0284 Polyadenylation factor 100.0 2.4E-35 5.2E-40 250.3 12.5 265 82-407 95-360 (464)
24 KOG0281 Beta-TrCP (transducin 100.0 4E-35 8.6E-40 244.3 12.0 259 82-406 196-458 (499)
25 KOG0266 WD40 repeat-containing 100.0 4.1E-33 8.8E-38 260.9 26.5 267 82-407 158-432 (456)
26 KOG0276 Vesicle coat complex C 100.0 7.6E-34 1.6E-38 253.1 18.7 264 81-404 11-276 (794)
27 KOG0318 WD40 repeat stress pro 100.0 9.4E-33 2E-37 241.6 23.5 326 41-405 152-581 (603)
28 KOG0281 Beta-TrCP (transducin 100.0 3.4E-34 7.3E-39 238.8 12.4 263 42-380 203-478 (499)
29 KOG0286 G-protein beta subunit 100.0 2.7E-32 5.9E-37 222.5 22.8 262 38-317 57-343 (343)
30 KOG0645 WD40 repeat protein [G 100.0 1.5E-31 3.3E-36 215.9 24.7 277 74-407 5-290 (312)
31 KOG0291 WD40-repeat-containing 100.0 1.7E-31 3.7E-36 242.9 27.9 328 38-407 147-530 (893)
32 KOG0319 WD40-repeat-containing 100.0 8.3E-33 1.8E-37 251.0 18.9 268 47-378 338-618 (775)
33 KOG0282 mRNA splicing factor [ 100.0 1.2E-33 2.7E-38 244.9 12.4 281 71-377 202-503 (503)
34 KOG0277 Peroxisomal targeting 100.0 2.5E-32 5.3E-37 218.5 17.9 239 41-378 65-308 (311)
35 KOG0302 Ribosome Assembly prot 100.0 1E-31 2.2E-36 226.3 20.8 285 23-321 56-380 (440)
36 KOG0313 Microtubule binding pr 100.0 1.6E-31 3.6E-36 225.1 21.4 280 47-379 117-418 (423)
37 KOG0306 WD40-repeat-containing 100.0 5.3E-32 1.1E-36 246.1 19.4 242 133-407 393-644 (888)
38 KOG0265 U5 snRNP-specific prot 100.0 2.6E-31 5.6E-36 217.6 21.0 284 34-376 45-335 (338)
39 cd00200 WD40 WD40 domain, foun 100.0 4.3E-31 9.4E-36 234.0 23.3 267 81-377 7-289 (289)
40 KOG0315 G-protein beta subunit 100.0 2.2E-31 4.7E-36 212.5 18.1 251 95-407 9-268 (311)
41 KOG0306 WD40-repeat-containing 100.0 4.2E-31 9.1E-36 240.3 20.8 322 27-380 311-665 (888)
42 KOG0276 Vesicle coat complex C 100.0 3.5E-31 7.5E-36 236.3 19.5 253 41-338 18-276 (794)
43 KOG0268 Sof1-like rRNA process 100.0 2.9E-32 6.3E-37 228.4 11.2 276 71-379 56-345 (433)
44 KOG0318 WD40 repeat stress pro 100.0 5.7E-30 1.2E-34 224.3 25.5 320 76-407 52-497 (603)
45 KOG0274 Cdc4 and related F-box 100.0 1.8E-30 3.9E-35 242.5 23.4 299 17-394 190-491 (537)
46 PLN00181 protein SPA1-RELATED; 100.0 2.8E-30 6.1E-35 259.2 25.9 281 79-407 479-773 (793)
47 KOG0266 WD40 repeat-containing 100.0 8.7E-30 1.9E-34 238.5 26.1 283 37-379 160-454 (456)
48 PTZ00421 coronin; Provisional 100.0 5E-30 1.1E-34 239.2 24.1 213 79-379 71-290 (493)
49 KOG1446 Histone H3 (Lys4) meth 100.0 6.1E-30 1.3E-34 211.4 20.1 264 82-407 13-285 (311)
50 PTZ00420 coronin; Provisional 100.0 1E-28 2.2E-33 231.5 30.3 260 49-407 48-316 (568)
51 KOG0285 Pleiotropic regulator 100.0 4.1E-31 8.8E-36 221.2 12.4 223 147-405 146-368 (460)
52 KOG0296 Angio-associated migra 100.0 8.9E-31 1.9E-35 219.7 14.2 294 76-407 57-378 (399)
53 PLN00181 protein SPA1-RELATED; 100.0 7.9E-29 1.7E-33 248.8 29.6 293 36-378 483-792 (793)
54 KOG0293 WD40 repeat-containing 100.0 6.4E-30 1.4E-34 217.7 17.0 276 70-407 211-492 (519)
55 KOG0313 Microtubule binding pr 100.0 9.5E-30 2.1E-34 214.6 17.7 277 70-406 92-398 (423)
56 KOG0645 WD40 repeat protein [G 100.0 1.2E-28 2.5E-33 199.3 23.2 276 38-379 16-311 (312)
57 KOG0643 Translation initiation 100.0 2.6E-29 5.6E-34 202.6 19.4 279 77-407 4-297 (327)
58 KOG0310 Conserved WD40 repeat- 100.0 2.3E-30 5E-35 225.0 13.3 264 82-407 25-289 (487)
59 KOG0283 WD40 repeat-containing 100.0 5.2E-29 1.1E-33 230.3 20.6 268 81-399 265-546 (712)
60 KOG0274 Cdc4 and related F-box 100.0 3.3E-29 7.2E-34 234.0 18.4 254 82-406 207-463 (537)
61 KOG0292 Vesicle coat complex C 100.0 3.2E-29 6.9E-34 231.8 17.7 252 48-341 24-302 (1202)
62 KOG0292 Vesicle coat complex C 100.0 2.2E-29 4.8E-34 232.9 16.2 257 82-394 8-289 (1202)
63 KOG0278 Serine/threonine kinas 100.0 4E-29 8.6E-34 199.8 14.6 268 76-407 7-277 (334)
64 KOG0316 Conserved WD40 repeat- 100.0 8.5E-29 1.8E-33 196.2 16.2 215 154-405 19-233 (307)
65 KOG0296 Angio-associated migra 100.0 4.7E-28 1E-32 203.4 21.0 291 46-379 77-398 (399)
66 KOG0300 WD40 repeat-containing 100.0 2E-28 4.3E-33 202.3 16.8 284 45-406 160-453 (481)
67 KOG0288 WD40 repeat protein Ti 100.0 8.6E-30 1.9E-34 217.0 7.5 274 68-407 160-441 (459)
68 KOG0305 Anaphase promoting com 100.0 7E-28 1.5E-32 217.2 19.9 241 83-380 217-462 (484)
69 KOG1407 WD40 repeat protein [F 100.0 7.7E-28 1.7E-32 193.6 16.2 267 77-407 14-282 (313)
70 KOG0640 mRNA cleavage stimulat 100.0 1.7E-28 3.8E-33 201.9 12.8 235 76-395 105-345 (430)
71 KOG0269 WD40 repeat-containing 100.0 2.1E-28 4.5E-33 223.7 13.7 275 82-406 38-318 (839)
72 KOG0264 Nucleosome remodeling 100.0 1.2E-26 2.6E-31 200.4 23.8 252 42-320 130-405 (422)
73 KOG0772 Uncharacterized conser 100.0 1.9E-27 4E-32 208.1 17.3 283 71-406 155-466 (641)
74 KOG0293 WD40 repeat-containing 100.0 4.8E-27 1E-31 200.3 19.2 280 41-380 229-514 (519)
75 cd00200 WD40 WD40 domain, foun 100.0 3.4E-26 7.3E-31 202.6 25.6 262 36-317 9-289 (289)
76 KOG0275 Conserved WD40 repeat- 100.0 2.8E-27 6.1E-32 196.0 16.1 271 77-377 207-507 (508)
77 KOG0973 Histone transcription 100.0 2.6E-26 5.6E-31 217.8 24.2 305 38-380 15-356 (942)
78 KOG0278 Serine/threonine kinas 100.0 2.5E-27 5.3E-32 189.5 14.2 280 32-379 10-297 (334)
79 KOG0640 mRNA cleavage stimulat 100.0 2.2E-26 4.8E-31 189.5 19.8 284 22-407 98-406 (430)
80 KOG0641 WD40 repeat protein [G 99.9 3.1E-25 6.8E-30 175.1 25.3 296 34-379 30-349 (350)
81 KOG0310 Conserved WD40 repeat- 99.9 7.4E-27 1.6E-31 203.3 17.7 295 13-376 8-306 (487)
82 KOG0289 mRNA splicing factor [ 99.9 1.7E-26 3.8E-31 198.1 19.4 265 84-406 220-485 (506)
83 KOG0299 U3 snoRNP-associated p 99.9 1.5E-26 3.2E-31 200.0 18.2 294 77-407 136-435 (479)
84 KOG1407 WD40 repeat protein [F 99.9 5.2E-26 1.1E-30 183.1 18.8 262 35-342 19-283 (313)
85 KOG0308 Conserved WD40 repeat- 99.9 1.5E-26 3.2E-31 207.8 16.5 270 81-379 19-327 (735)
86 KOG0270 WD40 repeat-containing 99.9 4.6E-26 1E-30 196.1 18.7 266 15-379 153-449 (463)
87 KOG0289 mRNA splicing factor [ 99.9 4.4E-25 9.4E-30 189.5 22.5 303 8-378 194-505 (506)
88 KOG1332 Vesicle coat complex C 99.9 8E-26 1.7E-30 180.4 16.7 241 46-379 24-286 (299)
89 KOG0643 Translation initiation 99.9 5.3E-26 1.1E-30 183.6 15.7 285 33-379 7-317 (327)
90 KOG0288 WD40 repeat protein Ti 99.9 3.5E-26 7.6E-31 195.1 15.5 262 34-316 173-458 (459)
91 KOG1408 WD40 repeat protein [F 99.9 3.3E-25 7.2E-30 201.1 21.4 306 47-380 272-714 (1080)
92 PTZ00421 coronin; Provisional 99.9 4.8E-25 1E-29 205.9 23.0 166 189-380 70-246 (493)
93 KOG1332 Vesicle coat complex C 99.9 9.8E-26 2.1E-30 179.8 15.2 240 81-406 9-265 (299)
94 KOG0282 mRNA splicing factor [ 99.9 4.5E-26 9.8E-31 198.1 14.2 240 133-407 236-484 (503)
95 KOG0283 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 203.4 22.5 203 78-380 364-577 (712)
96 KOG1408 WD40 repeat protein [F 99.9 3.6E-25 7.8E-30 200.9 18.8 212 166-407 394-693 (1080)
97 KOG0646 WD40 repeat protein [G 99.9 4.5E-25 9.7E-30 191.2 18.5 274 99-405 10-327 (476)
98 KOG0269 WD40 repeat-containing 99.9 1.1E-25 2.5E-30 205.9 15.5 220 41-340 92-318 (839)
99 KOG0290 Conserved WD40 repeat- 99.9 1.1E-24 2.3E-29 178.1 19.1 276 32-342 40-346 (364)
100 KOG4283 Transcription-coupled 99.9 1.2E-24 2.5E-29 178.3 18.9 283 81-405 41-343 (397)
101 PTZ00420 coronin; Provisional 99.9 1.7E-24 3.7E-29 203.2 20.8 190 170-380 50-249 (568)
102 KOG0294 WD40 repeat-containing 99.9 3.8E-24 8.3E-29 176.8 20.0 247 76-380 36-282 (362)
103 KOG0308 Conserved WD40 repeat- 99.9 4.3E-25 9.3E-30 198.5 15.6 317 47-379 39-393 (735)
104 KOG0275 Conserved WD40 repeat- 99.9 4.7E-26 1E-30 188.8 8.5 179 192-403 211-398 (508)
105 KOG0267 Microtubule severing p 99.9 2.7E-26 5.8E-31 208.5 7.7 202 171-407 47-248 (825)
106 KOG0647 mRNA export protein (c 99.9 3E-24 6.5E-29 176.4 18.9 260 81-406 25-302 (347)
107 KOG0301 Phospholipase A2-activ 99.9 4.2E-24 9.2E-29 193.5 21.6 261 48-380 28-289 (745)
108 KOG1007 WD repeat protein TSSC 99.9 1.4E-24 3.1E-29 177.2 16.4 248 74-407 54-340 (370)
109 KOG1539 WD repeat protein [Gen 99.9 1E-23 2.2E-28 194.7 22.5 181 167-378 463-647 (910)
110 KOG0305 Anaphase promoting com 99.9 6.7E-25 1.5E-29 198.0 14.6 211 161-407 226-441 (484)
111 KOG4378 Nuclear protein COP1 [ 99.9 2.3E-24 4.9E-29 188.1 16.7 267 107-406 13-302 (673)
112 KOG0772 Uncharacterized conser 99.9 3.7E-24 8.1E-29 187.6 17.7 311 20-379 152-488 (641)
113 KOG0321 WD40 repeat-containing 99.9 5.7E-24 1.2E-28 190.9 19.3 301 11-407 26-370 (720)
114 KOG0301 Phospholipase A2-activ 99.9 6.9E-25 1.5E-29 198.5 13.5 257 78-405 9-267 (745)
115 KOG0973 Histone transcription 99.9 2.2E-24 4.8E-29 204.8 17.2 236 82-407 12-275 (942)
116 KOG0268 Sof1-like rRNA process 99.9 1.8E-24 3.9E-29 181.9 14.2 255 47-325 81-351 (433)
117 KOG0647 mRNA export protein (c 99.9 5.6E-23 1.2E-27 169.0 22.1 259 42-342 33-304 (347)
118 KOG1036 Mitotic spindle checkp 99.9 3E-23 6.4E-28 171.2 20.0 252 82-342 12-285 (323)
119 KOG0267 Microtubule severing p 99.9 3.4E-25 7.5E-30 201.3 9.1 236 78-351 23-258 (825)
120 KOG0641 WD40 repeat protein [G 99.9 1.6E-22 3.4E-27 159.9 22.4 287 70-405 19-327 (350)
121 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-21 2.7E-26 162.4 26.2 276 37-379 15-303 (311)
122 KOG0303 Actin-binding protein 99.9 4.4E-23 9.5E-28 175.4 17.9 260 27-380 25-295 (472)
123 KOG0299 U3 snoRNP-associated p 99.9 8.6E-23 1.9E-27 176.8 19.9 221 81-342 200-436 (479)
124 KOG2055 WD40 repeat protein [G 99.9 1.2E-22 2.5E-27 176.0 20.4 289 38-379 215-512 (514)
125 KOG0307 Vesicle coat complex C 99.9 4.8E-24 1E-28 203.5 12.8 242 47-380 82-328 (1049)
126 KOG0639 Transducin-like enhanc 99.9 1.9E-23 4E-28 182.7 15.0 269 76-378 412-703 (705)
127 KOG2096 WD40 repeat protein [G 99.9 6.5E-22 1.4E-26 163.9 21.8 278 77-407 80-383 (420)
128 KOG1274 WD40 repeat protein [G 99.9 2.1E-22 4.6E-27 187.9 21.2 259 80-406 10-279 (933)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.5E-22 9.8E-27 178.3 22.4 286 48-407 4-300 (300)
130 KOG2106 Uncharacterized conser 99.9 2.3E-21 5E-26 169.8 25.4 333 38-407 248-606 (626)
131 KOG4328 WD40 protein [Function 99.9 7E-23 1.5E-27 177.2 15.8 211 81-379 184-399 (498)
132 KOG1539 WD repeat protein [Gen 99.9 3.5E-22 7.6E-27 184.6 20.7 320 46-407 173-627 (910)
133 KOG0300 WD40 repeat-containing 99.9 1.3E-23 2.8E-28 173.9 9.4 204 149-380 145-387 (481)
134 KOG0270 WD40 repeat-containing 99.9 2.3E-22 4.9E-27 173.5 14.9 168 191-383 240-408 (463)
135 KOG2919 Guanine nucleotide-bin 99.9 1.2E-21 2.6E-26 162.7 18.6 286 86-407 52-350 (406)
136 KOG2445 Nuclear pore complex c 99.9 1.6E-21 3.5E-26 160.9 18.3 267 41-394 20-330 (361)
137 KOG4328 WD40 protein [Function 99.9 2.1E-21 4.5E-26 168.2 19.8 291 36-378 186-494 (498)
138 KOG0646 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 169.4 18.3 231 79-341 77-329 (476)
139 KOG0294 WD40 repeat-containing 99.9 6E-21 1.3E-25 158.0 20.8 234 38-321 47-283 (362)
140 KOG2445 Nuclear pore complex c 99.9 6.2E-21 1.3E-25 157.5 20.4 245 81-406 11-297 (361)
141 KOG4283 Transcription-coupled 99.9 4.2E-21 9.2E-26 157.5 19.1 290 38-378 47-364 (397)
142 KOG0650 WD40 repeat nucleolar 99.9 4.1E-22 8.8E-27 177.9 13.6 274 73-376 390-732 (733)
143 KOG0307 Vesicle coat complex C 99.9 1.9E-22 4.1E-27 192.7 11.9 260 54-407 38-306 (1049)
144 KOG4378 Nuclear protein COP1 [ 99.9 5E-22 1.1E-26 173.6 13.2 289 11-341 9-303 (673)
145 KOG1007 WD repeat protein TSSC 99.9 3.2E-21 6.8E-26 157.8 16.3 208 82-379 122-361 (370)
146 KOG0302 Ribosome Assembly prot 99.9 1.3E-21 2.9E-26 165.5 14.3 177 182-380 199-379 (440)
147 KOG1273 WD40 repeat protein [G 99.9 4.5E-21 9.7E-26 158.8 16.5 230 81-405 22-301 (405)
148 KOG1063 RNA polymerase II elon 99.9 2.7E-20 5.9E-25 169.0 21.5 328 47-406 208-673 (764)
149 KOG2048 WD40 repeat protein [G 99.9 2E-20 4.2E-25 169.6 18.9 267 82-405 24-299 (691)
150 KOG1274 WD40 repeat protein [G 99.9 3.4E-20 7.4E-25 173.4 20.9 245 47-342 27-281 (933)
151 KOG0321 WD40 repeat-containing 99.9 3.2E-20 7E-25 167.0 19.7 293 42-406 106-426 (720)
152 KOG1034 Transcriptional repres 99.9 5.3E-21 1.2E-25 159.2 12.7 271 81-379 36-337 (385)
153 KOG1036 Mitotic spindle checkp 99.9 3.5E-20 7.5E-25 153.2 16.9 247 41-309 18-294 (323)
154 KOG1587 Cytoplasmic dynein int 99.9 2.3E-19 5E-24 166.9 24.4 269 75-388 234-525 (555)
155 KOG2106 Uncharacterized conser 99.8 6.4E-19 1.4E-23 154.7 22.6 257 84-379 247-521 (626)
156 KOG1063 RNA polymerase II elon 99.8 3.3E-19 7.1E-24 162.0 20.2 342 40-407 320-733 (764)
157 KOG2055 WD40 repeat protein [G 99.8 2.6E-19 5.6E-24 155.5 18.2 232 83-407 213-445 (514)
158 KOG0322 G-protein beta subunit 99.8 3.5E-19 7.6E-24 144.2 16.0 279 76-378 7-322 (323)
159 KOG0639 Transducin-like enhanc 99.8 4.2E-19 9.2E-24 155.7 17.4 252 48-318 434-703 (705)
160 KOG1273 WD40 repeat protein [G 99.8 7.5E-19 1.6E-23 145.7 17.5 283 39-380 26-323 (405)
161 KOG1034 Transcriptional repres 99.8 2.3E-19 5E-24 149.5 14.5 249 35-379 88-383 (385)
162 KOG2048 WD40 repeat protein [G 99.8 8.1E-18 1.8E-22 152.8 24.5 260 36-339 25-299 (691)
163 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 8.6E-19 1.9E-23 157.0 18.4 249 96-407 1-258 (300)
164 KOG1188 WD40 repeat protein [G 99.8 1.7E-18 3.8E-23 145.1 15.6 272 97-405 41-324 (376)
165 KOG1445 Tumor-specific antigen 99.8 3.3E-18 7.1E-23 154.2 18.4 147 170-324 599-755 (1012)
166 KOG1334 WD40 repeat protein [G 99.8 3.4E-18 7.4E-23 149.6 17.5 279 77-404 136-443 (559)
167 KOG0642 Cell-cycle nuclear pro 99.8 7.7E-19 1.7E-23 156.3 13.6 287 16-398 281-574 (577)
168 KOG2919 Guanine nucleotide-bin 99.8 2.2E-17 4.8E-22 137.5 20.8 271 41-342 54-351 (406)
169 KOG1188 WD40 repeat protein [G 99.8 8.6E-19 1.9E-23 146.9 12.0 193 165-380 41-243 (376)
170 KOG1445 Tumor-specific antigen 99.8 2.8E-18 6E-23 154.6 15.1 234 55-379 603-844 (1012)
171 KOG1009 Chromatin assembly com 99.8 3.1E-17 6.6E-22 140.6 18.8 262 38-375 15-368 (434)
172 KOG0290 Conserved WD40 repeat- 99.8 3.8E-17 8.1E-22 134.3 18.5 207 36-315 150-361 (364)
173 KOG1009 Chromatin assembly com 99.8 7.7E-18 1.7E-22 144.3 14.5 174 82-323 12-199 (434)
174 KOG1517 Guanine nucleotide bin 99.8 2.9E-17 6.2E-22 156.1 19.7 295 43-379 1074-1381(1387)
175 KOG2096 WD40 repeat protein [G 99.8 9.2E-17 2E-21 133.6 20.0 335 13-399 60-418 (420)
176 KOG0649 WD40 repeat protein [G 99.8 2.6E-17 5.6E-22 131.9 16.0 212 85-379 12-235 (325)
177 KOG0303 Actin-binding protein 99.8 6.5E-18 1.4E-22 144.2 12.9 167 188-380 75-250 (472)
178 KOG0644 Uncharacterized conser 99.8 1.2E-18 2.5E-23 161.5 8.4 242 77-365 184-464 (1113)
179 KOG0322 G-protein beta subunit 99.8 1.2E-17 2.5E-22 135.4 12.9 272 29-318 9-322 (323)
180 KOG1524 WD40 repeat-containing 99.8 1.5E-17 3.3E-22 147.2 14.5 227 81-342 12-238 (737)
181 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-16 3.3E-21 149.0 21.6 268 78-405 60-336 (466)
182 KOG4227 WD40 repeat protein [G 99.7 5.7E-17 1.2E-21 138.4 16.0 178 78-323 51-229 (609)
183 KOG0650 WD40 repeat nucleolar 99.7 7.3E-17 1.6E-21 144.7 16.9 264 38-316 404-732 (733)
184 KOG2394 WD40 protein DMR-N9 [G 99.7 1.7E-16 3.7E-21 140.7 18.9 250 82-398 218-470 (636)
185 KOG1587 Cytoplasmic dynein int 99.7 2E-16 4.4E-21 147.4 19.6 278 18-320 226-517 (555)
186 KOG0649 WD40 repeat protein [G 99.7 2.6E-16 5.7E-21 126.2 16.5 221 48-342 25-257 (325)
187 KOG0642 Cell-cycle nuclear pro 99.7 3.6E-17 7.9E-22 145.7 12.5 241 76-406 287-540 (577)
188 KOG1517 Guanine nucleotide bin 99.7 4.8E-16 1E-20 147.9 20.0 273 85-406 1066-1360(1387)
189 KOG0771 Prolactin regulatory e 99.7 1.8E-16 4E-21 136.7 12.7 151 187-342 179-335 (398)
190 KOG1310 WD40 repeat protein [G 99.7 1.5E-16 3.3E-21 141.3 12.1 175 78-320 45-232 (758)
191 PRK01742 tolB translocation pr 99.7 1.7E-15 3.6E-20 141.8 19.8 220 79-407 199-425 (429)
192 KOG1272 WD40-repeat-containing 99.7 2E-16 4.4E-21 137.8 12.0 232 84-378 130-361 (545)
193 KOG1523 Actin-related protein 99.7 2.1E-15 4.5E-20 125.8 16.1 208 83-379 10-236 (361)
194 KOG2110 Uncharacterized conser 99.7 2E-14 4.2E-19 122.3 18.9 176 174-382 68-251 (391)
195 KOG1524 WD40 repeat-containing 99.7 1.6E-15 3.5E-20 134.5 12.8 168 80-343 101-268 (737)
196 COG2319 FOG: WD40 repeat [Gene 99.6 2.6E-13 5.6E-18 127.0 28.2 289 52-379 131-442 (466)
197 KOG1240 Protein kinase contain 99.6 1.1E-14 2.4E-19 140.9 18.7 272 76-380 1041-1335(1431)
198 KOG2321 WD40 repeat protein [G 99.6 1.6E-14 3.4E-19 129.4 16.7 280 73-383 41-347 (703)
199 PRK11028 6-phosphogluconolacto 99.6 3E-13 6.5E-18 122.8 25.7 277 50-379 7-304 (330)
200 KOG1538 Uncharacterized conser 99.6 1.3E-14 2.9E-19 132.0 16.2 262 85-379 14-293 (1081)
201 KOG0771 Prolactin regulatory e 99.6 4.7E-14 1E-18 122.0 17.1 175 198-407 148-334 (398)
202 KOG3881 Uncharacterized conser 99.6 8.6E-14 1.9E-18 119.2 18.3 176 81-325 146-326 (412)
203 KOG0644 Uncharacterized conser 99.6 5.8E-16 1.3E-20 143.9 5.3 201 184-406 180-404 (1113)
204 KOG1523 Actin-related protein 99.6 2.3E-13 5E-18 113.7 19.5 230 36-339 10-257 (361)
205 PRK03629 tolB translocation pr 99.6 4.8E-13 1E-17 125.0 23.9 172 198-407 246-427 (429)
206 KOG1963 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 127.5 19.0 263 78-379 52-322 (792)
207 KOG4547 WD40 repeat-containing 99.6 1.8E-13 3.8E-18 123.4 16.8 213 93-320 2-221 (541)
208 PRK04922 tolB translocation pr 99.6 1.3E-12 2.9E-17 122.6 22.8 173 197-407 250-432 (433)
209 PF08662 eIF2A: Eukaryotic tra 99.5 3.6E-13 7.7E-18 111.3 16.5 151 198-379 9-179 (194)
210 KOG1310 WD40 repeat protein [G 99.5 2.2E-14 4.7E-19 127.8 9.6 184 186-378 42-230 (758)
211 KOG2394 WD40 protein DMR-N9 [G 99.5 2.1E-14 4.6E-19 127.6 9.2 167 167-341 188-384 (636)
212 KOG4227 WD40 repeat protein [G 99.5 3.2E-13 6.8E-18 115.8 15.3 278 48-378 71-386 (609)
213 KOG1538 Uncharacterized conser 99.5 3.4E-13 7.4E-18 123.0 16.1 230 76-320 46-294 (1081)
214 KOG3881 Uncharacterized conser 99.5 2.1E-12 4.5E-17 110.9 19.0 258 79-392 51-327 (412)
215 PF08662 eIF2A: Eukaryotic tra 99.5 2.9E-12 6.4E-17 105.8 19.1 116 194-325 59-184 (194)
216 KOG1272 WD40-repeat-containing 99.5 2.2E-14 4.8E-19 125.3 6.4 250 77-376 164-418 (545)
217 KOG1240 Protein kinase contain 99.5 4.8E-12 1E-16 123.0 22.3 250 46-324 1062-1339(1431)
218 KOG2110 Uncharacterized conser 99.5 4.5E-12 9.8E-17 108.1 19.0 136 176-322 108-251 (391)
219 PRK02889 tolB translocation pr 99.5 7.8E-12 1.7E-16 117.1 22.7 178 196-407 241-424 (427)
220 KOG0280 Uncharacterized conser 99.5 1.4E-12 3E-17 107.9 15.3 140 197-342 124-264 (339)
221 KOG2111 Uncharacterized conser 99.5 1.6E-11 3.4E-16 102.9 21.5 178 174-381 75-258 (346)
222 KOG2139 WD40 repeat protein [G 99.5 1.2E-11 2.6E-16 105.3 19.1 208 41-324 103-314 (445)
223 PRK05137 tolB translocation pr 99.5 2.3E-11 5E-16 114.4 23.4 221 78-407 196-432 (435)
224 KOG1963 WD40 repeat protein [G 99.5 1.3E-11 2.7E-16 116.4 20.7 255 81-380 203-539 (792)
225 PRK01742 tolB translocation pr 99.4 1.5E-12 3.2E-17 122.1 13.3 173 173-379 183-361 (429)
226 KOG1354 Serine/threonine prote 99.4 4E-12 8.7E-17 107.4 13.7 277 82-379 24-359 (433)
227 KOG0280 Uncharacterized conser 99.4 1.1E-11 2.3E-16 102.8 15.7 130 186-321 157-286 (339)
228 KOG2111 Uncharacterized conser 99.4 1.4E-10 3.1E-15 97.3 21.3 165 75-271 86-257 (346)
229 KOG1409 Uncharacterized conser 99.4 1.8E-11 4E-16 103.5 15.7 262 43-320 34-395 (404)
230 KOG2139 WD40 repeat protein [G 99.4 5E-12 1.1E-16 107.5 12.4 184 194-407 98-290 (445)
231 TIGR02800 propeller_TolB tol-p 99.4 1.4E-10 3E-15 109.0 22.7 173 195-406 234-417 (417)
232 KOG0974 WD-repeat protein WDR6 99.4 8.5E-12 1.8E-16 119.5 14.3 184 164-379 99-288 (967)
233 PRK11028 6-phosphogluconolacto 99.4 5.9E-11 1.3E-15 107.8 18.9 185 169-379 7-205 (330)
234 KOG0974 WD-repeat protein WDR6 99.4 1.4E-11 3.1E-16 118.1 14.6 193 95-322 98-291 (967)
235 KOG0309 Conserved WD40 repeat- 99.3 1.2E-11 2.5E-16 114.4 12.3 271 24-381 55-341 (1081)
236 PRK00178 tolB translocation pr 99.3 5.6E-10 1.2E-14 105.2 24.1 173 197-407 245-427 (430)
237 PRK04792 tolB translocation pr 99.3 3E-10 6.5E-15 106.8 20.9 171 199-407 266-446 (448)
238 KOG1334 WD40 repeat protein [G 99.3 4.4E-11 9.5E-16 105.6 13.9 243 48-323 202-470 (559)
239 PRK02889 tolB translocation pr 99.3 5E-11 1.1E-15 111.7 13.9 175 175-379 177-360 (427)
240 KOG1064 RAVE (regulator of V-A 99.3 4.8E-11 1E-15 120.2 13.3 199 82-329 2207-2408(2439)
241 KOG4547 WD40 repeat-containing 99.3 1.1E-10 2.3E-15 105.8 14.3 166 166-341 7-194 (541)
242 PF02239 Cytochrom_D1: Cytochr 99.3 4.6E-10 1E-14 102.1 18.4 275 50-379 11-347 (369)
243 PRK05137 tolB translocation pr 99.3 2E-10 4.2E-15 108.2 16.3 173 175-379 183-366 (435)
244 PRK04922 tolB translocation pr 99.2 2E-10 4.4E-15 107.9 14.9 174 174-379 184-368 (433)
245 KOG1064 RAVE (regulator of V-A 99.2 3.8E-11 8.2E-16 120.9 9.7 207 133-380 2189-2399(2439)
246 KOG0309 Conserved WD40 repeat- 99.2 4.2E-11 9.2E-16 110.8 8.9 284 74-404 15-306 (1081)
247 KOG4532 WD40-like repeat conta 99.2 4.6E-09 1E-13 86.3 19.4 211 87-328 71-291 (344)
248 PRK03629 tolB translocation pr 99.2 8.1E-09 1.8E-13 96.8 23.9 132 196-342 288-428 (429)
249 KOG4497 Uncharacterized conser 99.2 2.1E-10 4.6E-15 96.6 10.3 264 82-379 47-391 (447)
250 KOG1354 Serine/threonine prote 99.2 3.8E-10 8.2E-15 95.7 11.2 269 45-322 37-362 (433)
251 KOG2314 Translation initiation 99.1 2.4E-08 5.2E-13 90.1 22.3 306 35-379 209-573 (698)
252 KOG4714 Nucleoporin [Nuclear s 99.1 1.1E-09 2.4E-14 89.5 12.2 150 217-377 159-316 (319)
253 KOG2315 Predicted translation 99.1 2.3E-08 4.9E-13 90.4 20.8 112 238-379 269-390 (566)
254 PF12265 CAF1C_H4-bd: Histone- 99.1 8.4E-11 1.8E-15 79.7 3.6 51 13-63 1-54 (74)
255 KOG1409 Uncharacterized conser 99.1 4.6E-09 9.9E-14 89.3 14.4 248 77-380 18-271 (404)
256 KOG4497 Uncharacterized conser 99.1 1E-09 2.2E-14 92.6 10.3 172 195-377 49-238 (447)
257 KOG3914 WD repeat protein WDR4 99.1 3.5E-09 7.6E-14 91.8 13.8 105 212-328 127-232 (390)
258 PRK01029 tolB translocation pr 99.1 2.4E-08 5.1E-13 93.3 20.5 181 197-407 233-424 (428)
259 KOG2321 WD40 repeat protein [G 99.1 2.1E-08 4.6E-13 90.8 18.8 180 134-324 155-348 (703)
260 TIGR02800 propeller_TolB tol-p 99.0 1.3E-08 2.8E-13 95.7 17.9 173 175-379 171-354 (417)
261 KOG4190 Uncharacterized conser 99.0 8.9E-10 1.9E-14 99.1 9.3 187 71-331 723-918 (1034)
262 KOG2315 Predicted translation 99.0 6.1E-08 1.3E-12 87.7 20.4 213 81-320 163-391 (566)
263 COG5170 CDC55 Serine/threonine 99.0 2.2E-09 4.9E-14 89.9 10.2 218 82-380 25-310 (460)
264 PRK01029 tolB translocation pr 99.0 1.1E-07 2.4E-12 88.9 22.6 136 197-342 283-425 (428)
265 COG5354 Uncharacterized protei 99.0 7.7E-08 1.7E-12 86.1 19.9 298 35-379 31-395 (561)
266 PRK00178 tolB translocation pr 99.0 5.1E-08 1.1E-12 91.9 17.9 172 176-379 181-363 (430)
267 PF10282 Lactonase: Lactonase, 98.9 2.1E-07 4.4E-12 84.9 21.1 164 195-379 144-322 (345)
268 COG2706 3-carboxymuconate cycl 98.9 2.3E-06 5E-11 73.9 25.0 161 197-379 147-321 (346)
269 PRK04792 tolB translocation pr 98.9 4.8E-07 1E-11 85.3 23.2 133 196-341 307-446 (448)
270 PF02239 Cytochrom_D1: Cytochr 98.9 7E-08 1.5E-12 88.0 15.9 145 169-324 11-163 (369)
271 KOG2695 WD40 repeat protein [G 98.9 7.2E-09 1.6E-13 88.2 7.4 168 168-342 228-403 (425)
272 KOG3914 WD repeat protein WDR4 98.9 2.5E-08 5.4E-13 86.7 10.7 153 197-379 65-223 (390)
273 TIGR02658 TTQ_MADH_Hv methylam 98.8 3E-06 6.5E-11 75.8 23.9 117 202-328 201-339 (352)
274 PLN02919 haloacid dehalogenase 98.8 1.7E-06 3.6E-11 89.4 24.0 161 198-380 686-889 (1057)
275 PF15492 Nbas_N: Neuroblastoma 98.8 2.7E-06 5.9E-11 71.3 19.8 214 85-333 45-273 (282)
276 KOG2041 WD40 repeat protein [G 98.8 6.4E-08 1.4E-12 90.0 11.2 175 81-319 12-186 (1189)
277 PF00400 WD40: WD domain, G-be 98.8 1.8E-08 3.9E-13 59.5 5.2 38 279-317 2-39 (39)
278 KOG2695 WD40 repeat protein [G 98.8 1.7E-08 3.7E-13 85.9 6.8 154 211-394 228-385 (425)
279 PF00400 WD40: WD domain, G-be 98.7 3E-08 6.4E-13 58.6 5.4 38 185-223 2-39 (39)
280 KOG4532 WD40-like repeat conta 98.7 1.6E-06 3.5E-11 71.7 17.0 167 165-341 85-260 (344)
281 PF04762 IKI3: IKI3 family; I 98.7 1E-05 2.2E-10 82.3 25.1 248 38-323 77-337 (928)
282 COG5170 CDC55 Serine/threonine 98.7 8.3E-08 1.8E-12 80.7 8.4 174 191-377 169-365 (460)
283 TIGR03300 assembly_YfgL outer 98.7 1.1E-06 2.4E-11 81.4 17.0 260 96-396 65-349 (377)
284 PRK04043 tolB translocation pr 98.7 1.2E-05 2.5E-10 74.9 23.5 133 195-342 233-378 (419)
285 KOG4714 Nucleoporin [Nuclear s 98.7 1.2E-07 2.6E-12 77.8 8.9 146 208-379 102-254 (319)
286 PLN02919 haloacid dehalogenase 98.7 5.6E-06 1.2E-10 85.6 23.1 119 196-323 741-892 (1057)
287 TIGR03300 assembly_YfgL outer 98.6 3.8E-06 8.2E-11 77.9 19.2 245 96-376 105-376 (377)
288 KOG1912 WD40 repeat protein [G 98.6 1.7E-06 3.8E-11 81.5 16.3 316 81-405 53-475 (1062)
289 COG4946 Uncharacterized protei 98.6 1E-05 2.2E-10 72.3 20.2 138 192-342 357-499 (668)
290 KOG1645 RING-finger-containing 98.6 1.1E-06 2.3E-11 76.8 13.1 95 176-273 175-269 (463)
291 KOG1912 WD40 repeat protein [G 98.6 1.2E-06 2.6E-11 82.6 14.0 263 82-380 14-305 (1062)
292 PF10282 Lactonase: Lactonase, 98.6 7.3E-06 1.6E-10 74.7 19.2 219 82-319 85-322 (345)
293 KOG1275 PAB-dependent poly(A) 98.5 6.8E-07 1.5E-11 85.6 11.2 180 166-378 149-341 (1118)
294 KOG0882 Cyclophilin-related pe 98.5 7.3E-07 1.6E-11 78.8 10.5 218 80-395 6-241 (558)
295 PF08450 SGL: SMP-30/Gluconola 98.5 4.4E-05 9.6E-10 66.1 20.8 214 88-339 4-232 (246)
296 KOG4190 Uncharacterized conser 98.5 2.2E-06 4.7E-11 77.8 12.1 200 47-324 749-953 (1034)
297 KOG2066 Vacuolar assembly/sort 98.5 6.3E-06 1.4E-10 78.2 15.3 149 166-335 51-203 (846)
298 KOG1832 HIV-1 Vpr-binding prot 98.4 3.6E-07 7.9E-12 87.2 6.7 197 81-332 1099-1304(1516)
299 COG2706 3-carboxymuconate cycl 98.4 4.1E-05 8.8E-10 66.4 18.4 166 192-380 37-222 (346)
300 KOG1008 Uncharacterized conser 98.4 1.1E-07 2.4E-12 87.5 3.0 195 47-320 72-276 (783)
301 KOG1275 PAB-dependent poly(A) 98.4 2.1E-06 4.6E-11 82.4 11.4 145 165-318 188-341 (1118)
302 COG4946 Uncharacterized protei 98.4 2.6E-05 5.7E-10 69.8 16.7 124 169-304 376-504 (668)
303 KOG1645 RING-finger-containing 98.4 2E-05 4.3E-10 69.1 15.6 81 79-228 189-269 (463)
304 KOG2041 WD40 repeat protein [G 98.4 4.9E-06 1.1E-10 77.9 12.4 265 42-405 20-316 (1189)
305 KOG2114 Vacuolar assembly/sort 98.3 5.5E-05 1.2E-09 72.6 17.6 140 197-342 68-225 (933)
306 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00011 2.3E-09 66.0 18.3 119 248-393 202-338 (352)
307 PF15492 Nbas_N: Neuroblastoma 98.3 5.5E-05 1.2E-09 63.7 15.2 184 196-383 45-263 (282)
308 PF11768 DUF3312: Protein of u 98.3 0.00013 2.8E-09 67.5 18.6 91 66-228 242-332 (545)
309 PF11768 DUF3312: Protein of u 98.3 3.3E-05 7.2E-10 71.3 14.7 115 196-320 207-330 (545)
310 PRK04043 tolB translocation pr 98.2 0.00017 3.8E-09 67.2 19.4 133 196-342 189-329 (419)
311 COG5354 Uncharacterized protei 98.2 0.00036 7.8E-09 63.3 19.4 245 82-342 31-326 (561)
312 KOG1832 HIV-1 Vpr-binding prot 98.2 5.2E-06 1.1E-10 79.6 7.9 145 184-342 1091-1241(1516)
313 KOG0882 Cyclophilin-related pe 98.2 1.2E-05 2.6E-10 71.4 9.2 208 47-329 22-241 (558)
314 PRK11138 outer membrane biogen 98.1 0.00028 6E-09 65.8 18.7 245 97-378 121-393 (394)
315 KOG1008 Uncharacterized conser 98.1 2.8E-06 6E-11 78.6 4.0 186 194-407 56-253 (783)
316 KOG1920 IkappaB kinase complex 98.1 0.0013 2.8E-08 66.0 21.8 117 198-323 199-326 (1265)
317 PF04762 IKI3: IKI3 family; I 98.1 0.00036 7.9E-09 71.2 18.8 156 194-379 120-333 (928)
318 KOG2066 Vacuolar assembly/sort 98.0 1.3E-05 2.9E-10 76.1 7.3 152 194-395 39-197 (846)
319 PF08553 VID27: VID27 cytoplas 98.0 0.00015 3.2E-09 71.3 14.2 139 171-319 501-647 (794)
320 PF08450 SGL: SMP-30/Gluconola 98.0 0.003 6.4E-08 54.7 21.0 109 192-308 131-245 (246)
321 KOG2314 Translation initiation 98.0 0.001 2.2E-08 61.1 18.0 261 87-379 214-525 (698)
322 PF07433 DUF1513: Protein of u 98.0 0.005 1.1E-07 53.7 21.1 207 85-328 6-256 (305)
323 PRK02888 nitrous-oxide reducta 98.0 0.00045 9.8E-09 65.7 15.8 106 251-379 287-404 (635)
324 PF13360 PQQ_2: PQQ-like domai 97.9 0.0002 4.4E-09 61.6 12.7 177 167-379 39-230 (238)
325 KOG2114 Vacuolar assembly/sort 97.9 0.003 6.4E-08 61.2 20.6 129 194-332 125-257 (933)
326 PF13360 PQQ_2: PQQ-like domai 97.8 0.00095 2.1E-08 57.4 14.7 140 167-323 79-234 (238)
327 KOG3621 WD40 repeat-containing 97.7 0.0014 3E-08 62.1 14.5 118 195-320 77-198 (726)
328 PRK11138 outer membrane biogen 97.7 0.0046 9.9E-08 57.7 18.5 214 133-379 129-353 (394)
329 KOG4640 Anaphase-promoting com 97.7 0.00028 6E-09 65.8 9.5 94 238-340 19-114 (665)
330 KOG4640 Anaphase-promoting com 97.7 0.00029 6.3E-09 65.6 9.6 94 194-298 20-115 (665)
331 KOG2395 Protein involved in va 97.7 0.00064 1.4E-08 62.2 11.4 142 167-319 349-500 (644)
332 PF08596 Lgl_C: Lethal giant l 97.6 0.0022 4.7E-08 59.1 14.7 245 85-380 3-291 (395)
333 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.005 1.1E-07 44.8 13.4 103 197-315 2-110 (111)
334 KOG3621 WD40 repeat-containing 97.6 0.00049 1.1E-08 64.9 10.2 120 194-320 33-155 (726)
335 smart00320 WD40 WD40 repeats. 97.6 0.00018 4E-09 41.2 5.1 38 185-223 3-40 (40)
336 smart00320 WD40 WD40 repeats. 97.6 0.00022 4.8E-09 40.8 5.0 39 278-317 2-40 (40)
337 PF07433 DUF1513: Protein of u 97.5 0.0074 1.6E-07 52.6 15.1 116 177-301 31-175 (305)
338 PF06977 SdiA-regulated: SdiA- 97.5 0.015 3.2E-07 49.8 16.6 114 193-316 116-247 (248)
339 KOG2444 WD40 repeat protein [G 97.4 0.00045 9.8E-09 56.5 6.3 107 208-322 71-180 (238)
340 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.02 4.2E-07 41.7 13.6 65 194-265 42-109 (111)
341 KOG3617 WD40 and TPR repeat-co 97.4 0.00051 1.1E-08 66.2 7.1 114 199-325 20-137 (1416)
342 KOG1920 IkappaB kinase complex 97.3 0.033 7.1E-07 56.5 19.3 91 243-342 199-300 (1265)
343 PF08553 VID27: VID27 cytoplas 97.3 0.0069 1.5E-07 60.0 13.8 127 208-342 494-629 (794)
344 KOG2444 WD40 repeat protein [G 97.1 0.00058 1.3E-08 55.8 4.2 144 209-380 32-178 (238)
345 COG0823 TolB Periplasmic compo 97.0 0.01 2.2E-07 55.3 12.0 140 174-323 218-362 (425)
346 PF04841 Vps16_N: Vps16, N-ter 96.9 0.35 7.6E-06 45.2 22.3 78 251-339 189-267 (410)
347 COG3391 Uncharacterized conser 96.9 0.16 3.6E-06 47.0 19.0 209 85-329 75-293 (381)
348 KOG2079 Vacuolar assembly/sort 96.9 0.0024 5.2E-08 63.4 7.0 83 251-339 98-180 (1206)
349 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.072 1.6E-06 44.8 14.3 114 203-328 19-132 (354)
350 cd00216 PQQ_DH Dehydrogenases 96.9 0.13 2.9E-06 49.4 18.3 191 173-393 174-432 (488)
351 COG0823 TolB Periplasmic compo 96.8 0.024 5.2E-07 52.9 12.6 147 184-342 182-336 (425)
352 COG3386 Gluconolactonase [Carb 96.8 0.26 5.6E-06 43.9 18.5 139 195-339 111-262 (307)
353 KOG3617 WD40 and TPR repeat-co 96.7 0.0019 4.1E-08 62.4 4.6 109 243-379 19-131 (1416)
354 KOG2079 Vacuolar assembly/sort 96.7 0.0097 2.1E-07 59.3 9.1 101 208-319 100-203 (1206)
355 COG3391 Uncharacterized conser 96.7 0.16 3.5E-06 47.1 16.9 117 197-324 76-195 (381)
356 COG3386 Gluconolactonase [Carb 96.6 0.45 9.8E-06 42.4 18.7 119 184-310 152-277 (307)
357 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0092 2E-07 36.2 5.5 32 82-114 10-41 (47)
358 KOG4649 PQQ (pyrrolo-quinoline 96.5 0.25 5.5E-06 41.7 15.1 138 167-317 26-163 (354)
359 KOG2395 Protein involved in va 96.5 0.025 5.4E-07 52.2 10.1 125 208-342 347-482 (644)
360 PRK02888 nitrous-oxide reducta 96.4 0.19 4E-06 48.5 15.7 97 173-271 295-405 (635)
361 PF12894 Apc4_WD40: Anaphase-p 96.4 0.015 3.3E-07 35.2 5.4 32 238-270 10-41 (47)
362 PF04053 Coatomer_WDAD: Coatom 96.3 0.12 2.6E-06 48.5 13.6 214 82-320 31-263 (443)
363 PF00780 CNH: CNH domain; Int 96.0 0.65 1.4E-05 40.8 16.5 142 167-329 107-265 (275)
364 PF04841 Vps16_N: Vps16, N-ter 96.0 0.72 1.6E-05 43.2 17.1 38 186-225 72-109 (410)
365 PF03178 CPSF_A: CPSF A subuni 95.9 1.3 2.8E-05 40.0 19.2 116 196-316 131-262 (321)
366 PRK13616 lipoprotein LpqB; Pro 95.8 0.27 5.9E-06 48.1 14.0 104 195-315 350-472 (591)
367 PHA02713 hypothetical protein; 95.6 0.41 8.8E-06 46.8 14.5 96 218-323 433-537 (557)
368 PF04053 Coatomer_WDAD: Coatom 95.6 0.14 3.1E-06 48.0 10.8 143 192-379 30-173 (443)
369 PF02897 Peptidase_S9_N: Proly 95.4 0.68 1.5E-05 43.5 15.1 117 197-321 126-262 (414)
370 PF10313 DUF2415: Uncharacteri 95.4 0.067 1.4E-06 31.4 5.1 33 195-227 1-35 (43)
371 PF06433 Me-amine-dh_H: Methyl 95.4 1.5 3.3E-05 39.1 15.7 115 209-330 197-331 (342)
372 PF10313 DUF2415: Uncharacteri 95.4 0.071 1.5E-06 31.3 5.1 33 84-116 1-35 (43)
373 PF12234 Rav1p_C: RAVE protein 95.3 0.42 9.2E-06 46.5 12.9 118 196-319 31-156 (631)
374 COG5167 VID27 Protein involved 95.1 0.4 8.7E-06 44.5 11.5 137 170-319 486-632 (776)
375 PF06977 SdiA-regulated: SdiA- 95.1 0.62 1.3E-05 40.0 12.2 126 190-320 17-148 (248)
376 PF05096 Glu_cyclase_2: Glutam 94.8 2.4 5.2E-05 36.5 18.5 193 75-308 34-250 (264)
377 PHA02713 hypothetical protein; 94.4 0.31 6.8E-06 47.6 10.0 103 208-320 353-489 (557)
378 PF08596 Lgl_C: Lethal giant l 94.4 0.69 1.5E-05 42.9 11.6 123 241-379 3-173 (395)
379 PF06433 Me-amine-dh_H: Methyl 94.4 0.2 4.4E-06 44.5 7.6 187 175-394 119-329 (342)
380 PF15390 DUF4613: Domain of un 94.3 1 2.3E-05 42.8 12.2 121 192-319 54-186 (671)
381 PF08728 CRT10: CRT10; InterP 94.2 4.7 0.0001 40.1 17.1 107 208-319 115-246 (717)
382 PF03178 CPSF_A: CPSF A subuni 94.2 0.42 9.2E-06 43.1 9.8 116 192-320 86-203 (321)
383 PF00930 DPPIV_N: Dipeptidyl p 94.2 3.6 7.9E-05 37.7 16.0 143 194-342 183-338 (353)
384 PF14727 PHTB1_N: PTHB1 N-term 94.1 5.1 0.00011 37.4 18.0 129 94-225 35-204 (418)
385 KOG1916 Nuclear protein, conta 94.1 0.077 1.7E-06 52.3 4.8 120 190-319 128-265 (1283)
386 PF14870 PSII_BNR: Photosynthe 94.1 2.5 5.3E-05 37.6 13.8 124 193-325 143-266 (302)
387 PF05694 SBP56: 56kDa selenium 94.0 0.35 7.5E-06 44.4 8.4 148 172-324 155-347 (461)
388 COG3204 Uncharacterized protei 93.9 3.9 8.5E-05 35.6 16.2 77 194-271 180-264 (316)
389 PF00930 DPPIV_N: Dipeptidyl p 93.7 0.26 5.5E-06 45.2 7.5 93 216-319 22-131 (353)
390 KOG4460 Nuclear pore complex, 93.7 1.1 2.4E-05 41.9 11.1 82 241-324 105-203 (741)
391 cd00216 PQQ_DH Dehydrogenases 93.4 2.2 4.7E-05 41.2 13.5 112 208-328 111-273 (488)
392 PF10168 Nup88: Nuclear pore c 93.4 3.4 7.3E-05 41.6 14.9 82 240-323 85-183 (717)
393 KOG4441 Proteins containing BT 93.4 4.7 0.0001 39.6 15.8 103 208-320 429-547 (571)
394 KOG4499 Ca2+-binding protein R 93.4 2.2 4.8E-05 35.7 11.3 106 196-308 159-274 (310)
395 KOG3630 Nuclear pore complex, 93.4 0.9 1.9E-05 46.5 10.7 102 195-306 156-261 (1405)
396 COG3490 Uncharacterized protei 93.0 1.6 3.6E-05 37.6 10.2 102 197-304 70-177 (366)
397 PF05096 Glu_cyclase_2: Glutam 92.9 3.9 8.5E-05 35.2 12.6 119 196-329 46-167 (264)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 92.8 1.4 3.1E-05 40.8 10.6 85 238-329 306-408 (415)
399 KOG3630 Nuclear pore complex, 92.6 0.39 8.5E-06 48.9 7.2 118 196-320 102-229 (1405)
400 TIGR02604 Piru_Ver_Nterm putat 92.5 4.5 9.7E-05 37.3 13.8 109 195-308 14-142 (367)
401 PF10647 Gmad1: Lipoprotein Lp 92.4 4.8 0.0001 34.9 13.0 116 196-319 25-144 (253)
402 KOG4441 Proteins containing BT 92.3 2.1 4.5E-05 42.0 11.6 112 198-321 326-454 (571)
403 PF05694 SBP56: 56kDa selenium 92.2 1.3 2.9E-05 40.8 9.4 145 160-308 208-393 (461)
404 PF15390 DUF4613: Domain of un 92.2 7.5 0.00016 37.3 14.4 69 199-270 117-186 (671)
405 PHA03098 kelch-like protein; P 91.8 9.1 0.0002 37.4 15.7 104 208-321 391-513 (534)
406 COG3490 Uncharacterized protei 91.7 8.2 0.00018 33.5 17.6 209 81-326 65-317 (366)
407 KOG1916 Nuclear protein, conta 91.5 0.11 2.4E-06 51.3 1.9 123 196-324 182-328 (1283)
408 KOG4499 Ca2+-binding protein R 91.3 1.9 4.2E-05 36.0 8.5 110 87-213 161-272 (310)
409 PF12657 TFIIIC_delta: Transcr 91.2 2.2 4.8E-05 34.5 9.1 32 289-320 86-122 (173)
410 PF00780 CNH: CNH domain; Int 90.8 11 0.00023 33.0 14.0 147 165-323 8-169 (275)
411 TIGR02276 beta_rpt_yvtn 40-res 90.4 0.55 1.2E-05 27.4 3.7 32 298-329 1-32 (42)
412 KOG2247 WD40 repeat-containing 89.8 0.066 1.4E-06 49.2 -1.0 112 194-316 74-185 (615)
413 PF07676 PD40: WD40-like Beta 89.4 1.8 3.9E-05 24.7 5.3 30 287-316 7-38 (39)
414 PRK13616 lipoprotein LpqB; Pro 89.3 5.1 0.00011 39.5 11.3 89 240-342 350-458 (591)
415 PF12768 Rax2: Cortical protei 89.2 7.8 0.00017 34.1 11.3 78 193-271 35-124 (281)
416 PF14727 PHTB1_N: PTHB1 N-term 89.2 19 0.00042 33.7 15.5 156 204-379 34-204 (418)
417 KOG2377 Uncharacterized conser 88.6 3.8 8.2E-05 37.9 9.0 119 193-320 65-186 (657)
418 PF07569 Hira: TUP1-like enhan 88.5 3.3 7E-05 35.0 8.2 77 240-321 13-97 (219)
419 PF14870 PSII_BNR: Photosynthe 88.3 18 0.00039 32.2 14.7 111 193-316 185-301 (302)
420 PF12234 Rav1p_C: RAVE protein 88.0 29 0.00062 34.4 15.1 75 193-271 71-157 (631)
421 KOG2247 WD40 repeat-containing 87.9 0.12 2.6E-06 47.5 -0.7 133 240-406 35-168 (615)
422 PF14761 HPS3_N: Hermansky-Pud 87.8 15 0.00032 30.6 11.5 106 208-321 30-165 (215)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 87.3 10 0.00022 35.4 11.2 86 192-286 305-408 (415)
424 PF02897 Peptidase_S9_N: Proly 87.0 27 0.00058 32.8 19.8 117 197-319 229-357 (414)
425 PF08728 CRT10: CRT10; InterP 86.4 7.6 0.00016 38.7 10.3 114 251-378 113-245 (717)
426 PHA03098 kelch-like protein; P 86.3 7.4 0.00016 38.0 10.6 105 208-322 344-467 (534)
427 PF10647 Gmad1: Lipoprotein Lp 86.3 21 0.00046 30.9 16.8 118 196-315 67-192 (253)
428 PF07569 Hira: TUP1-like enhan 86.2 6.6 0.00014 33.2 8.8 71 196-271 14-96 (219)
429 COG3204 Uncharacterized protei 86.0 23 0.0005 31.0 14.4 124 192-320 83-211 (316)
430 TIGR03118 PEPCTERM_chp_1 conse 86.0 24 0.00052 31.2 13.0 121 196-319 24-170 (336)
431 KOG1897 Damage-specific DNA bi 85.8 13 0.00028 38.0 11.5 116 196-322 776-901 (1096)
432 PF12768 Rax2: Cortical protei 85.7 13 0.00027 32.8 10.5 100 217-326 16-130 (281)
433 PF11715 Nup160: Nucleoporin N 85.5 2.4 5.1E-05 41.6 6.7 74 251-327 157-256 (547)
434 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.9 40 0.00088 32.9 16.0 61 217-287 441-501 (527)
435 PF14583 Pectate_lyase22: Olig 84.7 32 0.0007 31.6 17.6 135 176-322 170-331 (386)
436 PRK13684 Ycf48-like protein; P 84.6 31 0.00068 31.3 13.2 119 194-323 172-291 (334)
437 COG5276 Uncharacterized conser 83.2 31 0.00068 30.3 15.9 119 194-324 86-204 (370)
438 PHA02790 Kelch-like protein; P 82.7 11 0.00024 36.2 9.8 101 208-321 364-472 (480)
439 PF14781 BBS2_N: Ciliary BBSom 82.3 20 0.00043 27.4 12.3 112 199-320 3-126 (136)
440 KOG1900 Nuclear pore complex, 82.1 11 0.00023 39.8 9.6 146 170-321 95-274 (1311)
441 TIGR02276 beta_rpt_yvtn 40-res 81.6 6.9 0.00015 22.5 5.3 25 204-228 1-25 (42)
442 PF01731 Arylesterase: Arylest 81.1 7.8 0.00017 27.1 6.0 31 290-320 55-85 (86)
443 PRK10115 protease 2; Provision 80.4 70 0.0015 32.5 15.6 113 196-318 128-254 (686)
444 TIGR03074 PQQ_membr_DH membran 80.4 74 0.0016 32.7 15.7 69 208-285 261-353 (764)
445 COG5167 VID27 Protein involved 80.4 22 0.00048 33.7 10.1 123 209-342 482-614 (776)
446 TIGR02604 Piru_Ver_Nterm putat 80.1 49 0.0011 30.5 16.1 100 196-307 73-201 (367)
447 PF11715 Nup160: Nucleoporin N 79.3 10 0.00022 37.2 8.5 71 208-284 159-256 (547)
448 KOG2377 Uncharacterized conser 78.8 35 0.00077 31.9 10.7 56 261-320 42-97 (657)
449 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.1 71 0.0015 31.2 18.0 56 263-324 272-338 (527)
450 PLN00033 photosystem II stabil 77.9 61 0.0013 30.3 14.0 106 197-316 241-353 (398)
451 PF07995 GSDH: Glucose / Sorbo 77.2 18 0.0004 32.8 8.9 113 196-312 3-136 (331)
452 KOG1900 Nuclear pore complex, 76.5 56 0.0012 34.9 12.6 76 193-273 177-275 (1311)
453 PF07676 PD40: WD40-like Beta 76.5 12 0.00025 21.2 5.5 30 193-222 7-38 (39)
454 KOG4460 Nuclear pore complex, 75.9 49 0.0011 31.6 10.9 79 194-273 103-201 (741)
455 TIGR03606 non_repeat_PQQ dehyd 75.9 74 0.0016 30.3 14.8 59 190-249 25-88 (454)
456 KOG2280 Vacuolar assembly/sort 75.6 45 0.00098 33.3 11.1 39 289-328 217-255 (829)
457 PF12341 DUF3639: Protein of u 75.0 9.8 0.00021 19.9 3.7 26 240-268 2-27 (27)
458 COG4590 ABC-type uncharacteriz 75.0 31 0.00066 32.2 9.3 150 187-342 213-368 (733)
459 KOG4659 Uncharacterized conser 74.7 1.3E+02 0.0028 32.5 15.7 24 190-214 657-680 (1899)
460 TIGR03548 mutarot_permut cycli 74.7 42 0.0009 30.3 10.6 62 208-271 125-195 (323)
461 PF07250 Glyoxal_oxid_N: Glyox 74.3 56 0.0012 28.1 11.5 124 200-332 72-210 (243)
462 PF10214 Rrn6: RNA polymerase 74.2 87 0.0019 32.3 13.7 119 194-320 145-277 (765)
463 COG3823 Glutamine cyclotransfe 73.7 52 0.0011 27.4 9.4 22 287-308 227-248 (262)
464 PHA02790 Kelch-like protein; P 72.2 31 0.00066 33.2 9.5 103 208-320 273-385 (480)
465 PF10214 Rrn6: RNA polymerase 72.0 1.3E+02 0.0027 31.2 17.9 133 84-272 146-278 (765)
466 COG4590 ABC-type uncharacteriz 71.7 52 0.0011 30.8 9.9 110 208-327 281-394 (733)
467 PF08801 Nucleoporin_N: Nup133 70.2 39 0.00085 31.9 9.6 30 241-271 191-220 (422)
468 PF10395 Utp8: Utp8 family; I 69.9 1.2E+02 0.0026 30.3 12.6 124 194-327 129-267 (670)
469 PF10168 Nup88: Nuclear pore c 67.3 1.5E+02 0.0033 30.2 21.7 38 193-230 145-184 (717)
470 PLN00033 photosystem II stabil 66.7 1.1E+02 0.0025 28.5 12.6 109 194-316 280-396 (398)
471 PF12657 TFIIIC_delta: Transcr 66.1 23 0.0005 28.6 6.2 35 333-379 87-121 (173)
472 PF07995 GSDH: Glucose / Sorbo 65.5 1.1E+02 0.0023 27.8 13.0 26 85-112 3-28 (331)
473 TIGR03074 PQQ_membr_DH membran 65.0 1.1E+02 0.0025 31.4 12.0 108 208-326 195-351 (764)
474 smart00564 PQQ beta-propeller 64.6 17 0.00038 19.4 3.8 25 253-283 7-31 (33)
475 PF14761 HPS3_N: Hermansky-Pud 64.1 52 0.0011 27.5 7.8 51 253-309 29-79 (215)
476 PF11635 Med16: Mediator compl 63.8 1.2E+02 0.0025 31.3 12.0 73 240-314 260-345 (753)
477 KOG3522 Predicted guanine nucl 62.6 1.1E+02 0.0024 31.2 10.8 147 167-328 550-706 (925)
478 PF14583 Pectate_lyase22: Olig 61.4 72 0.0016 29.4 8.9 87 201-297 42-131 (386)
479 KOG3616 Selective LIM binding 57.7 25 0.00054 35.0 5.6 68 239-317 14-81 (1636)
480 PF03088 Str_synth: Strictosid 57.6 65 0.0014 22.7 6.8 41 214-258 34-74 (89)
481 PLN02153 epithiospecifier prot 56.7 1.1E+02 0.0024 27.7 9.7 21 208-228 139-170 (341)
482 PF03088 Str_synth: Strictosid 55.5 35 0.00076 24.0 4.8 50 258-314 33-82 (89)
483 COG5290 IkappaB kinase complex 55.0 1.6E+02 0.0034 30.1 10.3 96 198-302 250-350 (1243)
484 PF02333 Phytase: Phytase; In 54.5 1.8E+02 0.0039 26.9 17.5 122 196-320 157-291 (381)
485 PRK10115 protease 2; Provision 52.2 2.8E+02 0.006 28.3 21.0 74 198-271 175-256 (686)
486 PF01011 PQQ: PQQ enzyme repea 51.7 40 0.00088 19.0 3.9 27 254-286 2-28 (38)
487 COG1520 FOG: WD40-like repeat 51.1 1.9E+02 0.0042 26.5 10.5 103 209-323 70-175 (370)
488 PLN02193 nitrile-specifier pro 51.0 2.1E+02 0.0046 27.5 10.9 156 206-379 228-410 (470)
489 KOG0379 Kelch repeat-containin 50.4 1.4E+02 0.003 28.9 9.5 108 208-322 124-252 (482)
490 PF13570 PQQ_3: PQQ-like domai 50.0 32 0.00069 19.6 3.4 21 251-271 20-40 (40)
491 KOG1898 Splicing factor 3b, su 49.8 3.5E+02 0.0075 28.8 14.6 273 30-333 725-1019(1205)
492 KOG1897 Damage-specific DNA bi 49.5 3.4E+02 0.0073 28.6 21.2 77 194-271 530-614 (1096)
493 TIGR02171 Fb_sc_TIGR02171 Fibr 48.7 2.2E+02 0.0047 29.7 10.6 82 216-305 328-415 (912)
494 PF07250 Glyoxal_oxid_N: Glyox 47.6 1.8E+02 0.004 25.0 9.8 93 220-318 49-147 (243)
495 KOG2714 SETA binding protein S 47.0 1.6E+02 0.0034 27.5 8.5 32 288-321 430-461 (465)
496 PRK13684 Ycf48-like protein; P 46.7 2.3E+02 0.0049 25.8 16.4 112 194-318 214-330 (334)
497 KOG2714 SETA binding protein S 46.0 1.9E+02 0.0041 27.1 8.9 127 165-321 236-373 (465)
498 PF01436 NHL: NHL repeat; Int 45.8 44 0.00096 17.3 4.6 25 86-111 4-28 (28)
499 PF14781 BBS2_N: Ciliary BBSom 45.3 1.4E+02 0.003 22.9 13.5 73 194-271 47-126 (136)
500 PF14269 Arylsulfotran_2: Aryl 43.7 1.2E+02 0.0027 27.0 7.6 72 196-271 145-221 (299)
No 1
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-48 Score=334.90 Aligned_cols=334 Identities=36% Similarity=0.633 Sum_probs=264.7
Q ss_pred cccCcchhhhhhhhccCceEEEeeeecccCCCeeEEEEeec--ccccCccceEEEEeec---------------------
Q 046899 7 GMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ--LEQATYKNRQRLYLSE--------------------- 63 (407)
Q Consensus 7 ~~~~~~~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~--~~~~~~~~~~~i~~~~--------------------- 63 (407)
.+.+.++|+|++||+|.|+||+++..|.++||++++||+|+ ...+.+...+|+++++
T Consensus 11 ~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~ 90 (422)
T KOG0264|consen 11 LEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDD 90 (422)
T ss_pred hccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcc
Confidence 44558899999999999999999999999999999999997 4444555568888888
Q ss_pred ------ccCcc--------cCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc--------
Q 046899 64 ------QFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-------- 121 (407)
Q Consensus 64 ------~~~~~--------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-------- 121 (407)
.++.+ .....++..+.+.|.++|+.+++.|++..++||++..+.|.|||..+......
T Consensus 91 ~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pd 170 (422)
T KOG0264|consen 91 AQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPD 170 (422)
T ss_pred cccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCc
Confidence 11111 12236677777889999999999999999999999999999999987654332
Q ss_pred --ccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-------ceeeEee
Q 046899 122 --VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-------ARGKYLG 192 (407)
Q Consensus 122 --~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-------~~~~~~~ 192 (407)
+.+|.. .|.-..|+.... ..+++++.++.+.+||+.... +...+.+
T Consensus 171 l~L~gH~~-----eg~glsWn~~~~--------------------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~ 225 (422)
T KOG0264|consen 171 LRLKGHEK-----EGYGLSWNRQQE--------------------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG 225 (422)
T ss_pred eEEEeecc-----cccccccccccc--------------------eeEeeccCCCcEEEEeccccccCCccccceEEeec
Confidence 223322 122233433321 236778888888888875433 3566789
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
|+..|..++|++....+|++++.|+.+.|||+|+..........+|.++|+|++|+|.++.+||||+.|++|++||+|++
T Consensus 226 h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 226 HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL 305 (422)
T ss_pred CCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence 99999999999998899999999999999999964333567778999999999999999999999999999999999997
Q ss_pred CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc--------------ccCCCcccCCC
Q 046899 273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY--------------GELKYPIIHPA 338 (407)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~--------------~~~~~~v~~~~ 338 (407)
.+++.++.+|+..|.+|.|+|+...+|||++.|+.+.|||+.+....+.- .+|...|....
T Consensus 306 -----~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 306 -----NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS 380 (422)
T ss_pred -----ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccccc
Confidence 47999999999999999999999999999999999999999986665541 23334444444
Q ss_pred CcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeeccccccCChHH
Q 046899 339 YSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRMIDLIYRPEEE 388 (407)
Q Consensus 339 ~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~~~~~~~~~~ 388 (407)
|+|. .. .|++.+.|+.++||+..++++.++.+
T Consensus 381 Wnp~------------------ePW~I~SvaeDN~LqIW~~s~~i~~~e~~ 413 (422)
T KOG0264|consen 381 WNPN------------------EPWTIASVAEDNILQIWQMAENIYNPEDP 413 (422)
T ss_pred CCCC------------------CCeEEEEecCCceEEEeeccccccCcccc
Confidence 4443 22 35588999999999999888776554
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-47 Score=320.88 Aligned_cols=309 Identities=20% Similarity=0.294 Sum_probs=265.9
Q ss_pred cCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 35 LVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 35 ~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
+.-|.++++|.| .+++|+.|.++||| +. +...| .....+|..-|.|++|+| +++.||+|+.||+|++|
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~W---D~--~TeTp---~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLW---DL--DTETP---LFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLW 184 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEee---cc--CCCCc---ceeecCCccEEEEEEECC-CcchhhccccCCeEEEe
Confidence 566899999999 79999999999999 22 22222 334448999999999999 99999999999999999
Q ss_pred eCcCCCCc-ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899 112 DVEAQPNR-HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY 190 (407)
Q Consensus 112 d~~~~~~~-~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 190 (407)
|..++++. ..+.+|...+.. ..|..- ... .-+..+++++.||.++|||...+.++..+
T Consensus 185 dpktg~~~g~~l~gH~K~It~-----Lawep~-------------hl~---p~~r~las~skDg~vrIWd~~~~~~~~~l 243 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITA-----LAWEPL-------------HLV---PPCRRLASSSKDGSVRIWDTKLGTCVRTL 243 (480)
T ss_pred cCCCCCcccccccCcccceeE-----Eeeccc-------------ccC---CCccceecccCCCCEEEEEccCceEEEEe
Confidence 99988754 566777665322 122211 111 12235888999999999999999999999
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec-----------C----------
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN-----------P---------- 249 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~-----------~---------- 249 (407)
.+|+.+|+|++|--+| ++++|+.|++|++|+...+. +...+.+|...|+.++.+ |
T Consensus 244 sgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred ccCccceEEEEEcCCc--eEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 9999999999998766 89999999999999999988 788999999999999877 2
Q ss_pred --------------CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 250 --------------HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 250 --------------~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
+.+..|++|++|.++.+|+.... .+++..+.+|...|+.+.|+||++++ |+++.|+.|++
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-----kkpi~rmtgHq~lVn~V~fSPd~r~I-ASaSFDkSVkL 393 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-----KKPITRMTGHQALVNHVSFSPDGRYI-ASASFDKSVKL 393 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-----ccchhhhhchhhheeeEEECCCccEE-EEeecccceee
Confidence 12345999999999999998764 47899999999999999999999976 89999999999
Q ss_pred EeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhh
Q 046899 316 WDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK 395 (407)
Q Consensus 316 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 395 (407)
||-++++.+.+|.+|-.+|+.++||.| ...|++||.|+++++|++. +..+...+.|
T Consensus 394 W~g~tGk~lasfRGHv~~VYqvawsaD------------------sRLlVS~SkDsTLKvw~V~------tkKl~~DLpG 449 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGHVAAVYQVAWSAD------------------SRLLVSGSKDSTLKVWDVR------TKKLKQDLPG 449 (480)
T ss_pred eeCCCcchhhhhhhccceeEEEEeccC------------------ccEEEEcCCCceEEEEEee------eeeecccCCC
Confidence 999999999999999999999999999 7889999999999999999 8889999999
Q ss_pred cccceeEeeccC
Q 046899 396 FKSHIFGCDKSC 407 (407)
Q Consensus 396 h~~~v~~~~~s~ 407 (407)
|.+.|++|+|||
T Consensus 450 h~DEVf~vDwsp 461 (480)
T KOG0271|consen 450 HADEVFAVDWSP 461 (480)
T ss_pred CCceEEEEEecC
Confidence 999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=307.14 Aligned_cols=282 Identities=18% Similarity=0.255 Sum_probs=251.4
Q ss_pred ccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEE
Q 046899 34 NLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVL 109 (407)
Q Consensus 34 ~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~ 109 (407)
.-+-|...|.|.+ .++|++++|..++|..+ .. .....+.+|.+.|.++.|+|. ++.-+|||+.||+|+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~------~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP------QC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecC------Cc--ceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 3456888888866 49999999999999443 22 335566799999999999996 477899999999999
Q ss_pred EEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee
Q 046899 110 IWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK 189 (407)
Q Consensus 110 vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 189 (407)
+|++.....+..+.+|...+. .+.|.+.|. .+++++.|.+-++||+.++..+..
T Consensus 245 lw~~~~e~~l~~l~gH~~RVs-----------------------~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL~ 298 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARVS-----------------------RVAFHPSGK---FLGTASFDSTWRLWDLETKSELLL 298 (459)
T ss_pred eeccCCCcchhhhhcchhhhe-----------------------eeeecCCCc---eeeecccccchhhcccccchhhHh
Confidence 999999888888888765421 123334444 489999999999999999999999
Q ss_pred EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
..+|...|.+++|+|+| .++++|+.|..-+|||+|++. ++..+.+|..+|.+|+|+| +|..||||+.|++++|||+
T Consensus 299 QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 299 QEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred hcccccccceeEecCCC-ceeeccCccchhheeecccCc--EEEEecccccceeeEeECC-CceEEeecCCCCcEEEeee
Confidence 99999999999999999 899999999999999999999 8999999999999999999 9999999999999999999
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETK 349 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~ 349 (407)
|. ...+.++.+|..-|+.|+|+|...+.|+|++.|+++++|..++..+++++.+|.+.|.+++.++|
T Consensus 375 R~------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d------- 441 (459)
T KOG0272|consen 375 RM------RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPD------- 441 (459)
T ss_pred cc------cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccC-------
Confidence 99 78899999999999999999965556789999999999999999999999999999999999999
Q ss_pred ceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899 350 LLTSIGMHLIHGRLLVCLTMVKVLEIWR 377 (407)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd 377 (407)
+..|++++.|.++++|.
T Consensus 442 -----------~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 -----------SQAIATSSFDRTIKLWR 458 (459)
T ss_pred -----------CceEEEeccCceeeecc
Confidence 89999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=307.25 Aligned_cols=269 Identities=22% Similarity=0.283 Sum_probs=244.2
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA 159 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
++-+.+|..+.|++ +++.||||+.+|.++||+.........+.+|...+.+. .| +|..
T Consensus 172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~-----~f-----------hP~~----- 229 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAA-----VF-----------HPVD----- 229 (459)
T ss_pred ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeE-----EE-----------ccCC-----
Confidence 46778999999998 89999999999999999999998888888887653221 11 1111
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
.+..+++++.||++++|+..+..+++.+.+|...|..++|+|+| .+|+|++.|.+-++||++++. ......+|.
T Consensus 230 ---~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~--ElL~QEGHs 303 (459)
T KOG0272|consen 230 ---SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKS--ELLLQEGHS 303 (459)
T ss_pred ---CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccch--hhHhhcccc
Confidence 12357889999999999999999999999999999999999999 899999999999999999988 667778999
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
..|.+++|.| +|.+++||+.|..-+|||+|+ +.++..+.+|..+|.+|+|+|+|.+| ||||.|++++|||++
T Consensus 304 ~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k~I~~V~fsPNGy~l-ATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 304 KGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIKEILSVAFSPNGYHL-ATGSSDNTCKVWDLR 375 (459)
T ss_pred cccceeEecC-CCceeeccCccchhheeeccc------CcEEEEecccccceeeEeECCCceEE-eecCCCCcEEEeeec
Confidence 9999999999 999999999999999999999 99999999999999999999999865 899999999999999
Q ss_pred CCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccc
Q 046899 320 KIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSH 399 (407)
Q Consensus 320 ~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 399 (407)
....+..+++|..-|+.+.|+|.. +.+|++++.|.+++||.-. ++++++++.||.+.
T Consensus 376 ~r~~ly~ipAH~nlVS~Vk~~p~~-----------------g~fL~TasyD~t~kiWs~~------~~~~~ksLaGHe~k 432 (459)
T KOG0272|consen 376 MRSELYTIPAHSNLVSQVKYSPQE-----------------GYFLVTASYDNTVKIWSTR------TWSPLKSLAGHEGK 432 (459)
T ss_pred ccccceecccccchhhheEecccC-----------------CeEEEEcccCcceeeecCC------CcccchhhcCCccc
Confidence 999999999999999999999863 8899999999999999998 89999999999999
Q ss_pred eeEeeccC
Q 046899 400 IFGCDKSC 407 (407)
Q Consensus 400 v~~~~~s~ 407 (407)
|.+|+.|+
T Consensus 433 V~s~Dis~ 440 (459)
T KOG0272|consen 433 VISLDISP 440 (459)
T ss_pred eEEEEecc
Confidence 99999874
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=292.45 Aligned_cols=269 Identities=20% Similarity=0.307 Sum_probs=236.0
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
...||.++|.|+.|+| ++..||||+.|.++|+||+.+.....+..+|...+.+
T Consensus 110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlc-------------------------- 162 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLC-------------------------- 162 (480)
T ss_pred ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEE--------------------------
Confidence 3457999999999999 9999999999999999999999888888888765321
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCce-eeEeecccCEEEEEECCCC----CcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGAR-GKYLGHEDTVEDVQFCPSS----AQEFCSVGDDSCLILWDARSGSTPAV 232 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~ 232 (407)
++-.+....+++|+.+|+|++||.++++++ ..+.+|...|++++|.|-. ..+||+++.||.|+|||+..+. ++
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~--~~ 240 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT--CV 240 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--EE
Confidence 112223346899999999999999998875 5688999999999998732 2689999999999999999888 88
Q ss_pred eeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc-----------CCCC
Q 046899 233 KVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS-----------PDKS 301 (407)
Q Consensus 233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----------~~~~ 301 (407)
..+.+|+.+|+|+.|. +..++++|+.|++|++|+... +.+.+++++|...|+.++.+ |.+.
T Consensus 241 ~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~d------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALD------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred EEeccCccceEEEEEc--CCceEEecCCCceEEEEEccc------hhHHHhhcccchheeeeeccchhhhhccccccccc
Confidence 9999999999999997 467999999999999999998 89999999999999999876 3333
Q ss_pred C------------------------EEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCCCCcCcchhccccceeeeeE
Q 046899 302 S------------------------VFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGM 356 (407)
Q Consensus 302 ~------------------------ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~ 356 (407)
+ -+++|++|.++.+|+....+ .+..+.+|..-|..+.||||
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd-------------- 378 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD-------------- 378 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC--------------
Confidence 3 24799999999999987665 56788899999999999999
Q ss_pred eeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 357 HLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 357 ~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+.+|+++|+|..|++||-. +|+.+.+|+||-+.|+.|+||.
T Consensus 379 ----~r~IASaSFDkSVkLW~g~------tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 379 ----GRYIASASFDKSVKLWDGR------TGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred ----ccEEEEeecccceeeeeCC------CcchhhhhhhccceeEEEEecc
Confidence 9999999999999999999 8999999999999999999984
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.5e-39 Score=254.39 Aligned_cols=293 Identities=18% Similarity=0.276 Sum_probs=242.1
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCC-CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC--ccccc
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHP-GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN--RHAVL 123 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--~~~~~ 123 (407)
.+++++||.++|+| ......+.+.+.|. +.|+.+...| +++.||+++. ..||+||+++... +..+.
T Consensus 12 iLvsA~YDhTIRfW---------qa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFW---------QALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred EEEeccCcceeeee---------ehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEe
Confidence 48899999999999 34456688888887 6799999999 8888998887 6999999998753 23333
Q ss_pred CcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEEC
Q 046899 124 GAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC 203 (407)
Q Consensus 124 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 203 (407)
+|... +....+........+++.||+++|||+....+.+.++ |..+|+++..+
T Consensus 81 ~h~kN--------------------------VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlh 133 (311)
T KOG0315|consen 81 GHTKN--------------------------VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLH 133 (311)
T ss_pred ccCCc--------------------------eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEec
Confidence 33221 1222222333457889999999999999977777775 77999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee
Q 046899 204 PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK 283 (407)
Q Consensus 204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~ 283 (407)
|.. ..|++|..+|.|++||+.+..... .....-...|.++...| +|.+++.+...|..++|++-........+|+..
T Consensus 134 pnQ-teLis~dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k 210 (311)
T KOG0315|consen 134 PNQ-TELISGDQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHK 210 (311)
T ss_pred CCc-ceEEeecCCCcEEEEEccCCcccc-ccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhh
Confidence 998 689999999999999999876322 22334457899999999 999999999999999999876443333678889
Q ss_pred ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC-CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc
Q 046899 284 FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI-GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR 362 (407)
Q Consensus 284 ~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~ 362 (407)
++.|+..+....+||++++| |++|.|.+++||+++.. +....+.+|...++..+||.| +.
T Consensus 211 ~~ah~~~il~C~lSPd~k~l-at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d------------------g~ 271 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYL-ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD------------------GE 271 (311)
T ss_pred eecccceEEEEEECCCCcEE-EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC------------------cc
Confidence 99999999999999999976 89999999999999988 666788899999999999999 99
Q ss_pred eeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899 363 LLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 363 ~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 405 (407)
+|++++.|..+|+|++. .++.++.+.||...-.|++.
T Consensus 272 YlvTassd~~~rlW~~~------~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 272 YLVTASSDHTARLWDLS------AGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEEecCCCCceeecccc------cCceeeecCCcccccEEEEe
Confidence 99999999999999999 89999999999888777764
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=257.01 Aligned_cols=271 Identities=20% Similarity=0.298 Sum_probs=232.9
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CC--------CCCcEEEEecc
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PD--------LDQSVVLWSIQ 142 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~--------~d~~i~~w~~~ 142 (407)
..+.+|.+.|.++.|++ +.++|++++.||.+.|||.-+......+.-....+ |. +|....+|++.
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 45568999999999999 89999999999999999988776554443222111 11 18899999988
Q ss_pred cc--------ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe
Q 046899 143 DH--------VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG 214 (407)
Q Consensus 143 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~ 214 (407)
.. .+.+..|...+....+-. +..+++++.|.++.+||+++++.++.+.+|.+.|.++.+.|..++.|++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 54 234556666555444444 677899999999999999999999999999999999999995449999999
Q ss_pred CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEE
Q 046899 215 DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVL 292 (407)
Q Consensus 215 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~ 292 (407)
-|+..++||+|.+. +.+.+.+|...|++++|.| +|.-|++|+.|+++++||+|. ...+..+.. ...+|+
T Consensus 207 cD~~aklWD~R~~~--c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa------D~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQ--CVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA------DQELAVYSHDSIICGIT 277 (343)
T ss_pred cccceeeeeccCcc--eeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecC------CcEEeeeccCcccCCce
Confidence 99999999999998 8999999999999999999 999999999999999999999 667776653 346899
Q ss_pred EEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899 293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV 372 (407)
Q Consensus 293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 372 (407)
+++||..|+.|| +|..|.++.+||.-+++....+.+|+..|+++..+|| +-.+++||=|.+
T Consensus 278 Sv~FS~SGRlLf-agy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D------------------G~av~TgSWDs~ 338 (343)
T KOG0286|consen 278 SVAFSKSGRLLF-AGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD------------------GMAVATGSWDST 338 (343)
T ss_pred eEEEcccccEEE-eeecCCceeEeeccccceEEEeeccCCeeEEEEECCC------------------CcEEEecchhHh
Confidence 999999999765 8899999999999999999999999999999999999 888999999999
Q ss_pred EEEee
Q 046899 373 LEIWR 377 (407)
Q Consensus 373 i~iwd 377 (407)
+|||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-38 Score=290.20 Aligned_cols=283 Identities=21% Similarity=0.335 Sum_probs=240.7
Q ss_pred ccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC-CCCCC---CCcEEEEeccc
Q 046899 68 EARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD-SHPDL---DQSVVLWSIQD 143 (407)
Q Consensus 68 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~---d~~i~~w~~~~ 143 (407)
.+..|.+-......-...++|..|++ ++.+||.|-.|..|++|.+...+.. .+..... ..++. |-.+.+.|.+.
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLK-KLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhc-cccchhhhccccccccchhhhhccccC
Confidence 44566666666666667899999998 8889999999999999999854321 2211110 00100 22234444443
Q ss_pred c--ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEE
Q 046899 144 H--VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLIL 221 (407)
Q Consensus 144 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~i 221 (407)
. ...+..|.+.+.-....+....+++++.|+++|+|.+.+..++..+++|..+|.++.|+|.| .+|||++.|++.++
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArL 519 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARL 519 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeee
Confidence 3 33567777777777777777889999999999999999999999999999999999999999 99999999999999
Q ss_pred EEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC
Q 046899 222 WDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 222 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 301 (407)
|...... ..+.+.+|.+.|.|+.|+| +.++++||+.|.+||+||+.+ +..++.|.+|.++|.+++|+|+|+
T Consensus 520 Ws~d~~~--PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~------G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 520 WSTDHNK--PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVST------GNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred eecccCC--chhhhcccccccceEEECC-cccccccCCCCceEEEEEcCC------CcEEEEecCCCCceEEEEEcCCCc
Confidence 9998876 6888999999999999999 999999999999999999999 999999999999999999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL 381 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~ 381 (407)
+| |+|+.||.|++||+.++..+..+.+|.+.|.++.||.| +..+++|+.|.+|++||+...
T Consensus 591 ~L-aSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d------------------g~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 591 YL-ASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD------------------GNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eE-eecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecC------------------CCEEEecCCCCeEEEEEchhh
Confidence 87 89999999999999999999999999999999999999 999999999999999999643
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=282.72 Aligned_cols=210 Identities=23% Similarity=0.384 Sum_probs=186.3
Q ss_pred ccccccCCCCCCCCCCC----CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---CCce----ee
Q 046899 166 KNASKSGGNGDKPLESP----SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS---TPAV----KV 234 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~----~~ 234 (407)
.+++++.|.++++|.++ +..++....+|+..|.+++++..+...|+++|.|+++++|++...+ .+.. ..
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 56778999999999653 3335666778999999999998888999999999999999998732 1122 24
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
...|...|+|++++| +..++|||+.|.+.++|++.. ...+.++.+|...|.+|.|+|..+ ++||+|.|++|+
T Consensus 459 ~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~------~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvK 530 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ------LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVK 530 (775)
T ss_pred HHhhcccccceEecC-CCceEEecccccceeeecccC------ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEE
Confidence 467999999999999 889999999999999999997 899999999999999999999988 668999999999
Q ss_pred EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
||.+.++.+++++++|...|..+.|-.+ +..+++++.||-|+||++. +++|+.++.
T Consensus 531 IW~is~fSClkT~eGH~~aVlra~F~~~------------------~~qliS~~adGliKlWnik------t~eC~~tlD 586 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEGHTSAVLRASFIRN------------------GKQLISAGADGLIKLWNIK------TNECEMTLD 586 (775)
T ss_pred EEEeccceeeeeecCccceeEeeeeeeC------------------CcEEEeccCCCcEEEEecc------chhhhhhhh
Confidence 9999999999999999999988888443 8899999999999999999 899999999
Q ss_pred hcccceeEeeccC
Q 046899 395 KFKSHIFGCDKSC 407 (407)
Q Consensus 395 ~h~~~v~~~~~s~ 407 (407)
+|.+.|++++-++
T Consensus 587 ~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 587 AHNDRVWALSVSP 599 (775)
T ss_pred hccceeEEEeecC
Confidence 9999999998764
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-37 Score=266.27 Aligned_cols=309 Identities=17% Similarity=0.294 Sum_probs=255.7
Q ss_pred cCCCeeEEEEeec----ccccCccceEEEEeecc-cCc-cc----CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC
Q 046899 35 LVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQ-FNE-EA----RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD 104 (407)
Q Consensus 35 ~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~-~~~-~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~ 104 (407)
++.|...+.|.|. +++++.+...|+|.... +.. .. +.+.-...+...-...|++|+|+. +|.+||||+.
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-~G~~LatG~~ 255 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-DGTLLATGSE 255 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-CCCeEEEeec
Confidence 6778899999993 67888888999994431 100 01 111111223334557899999998 9999999999
Q ss_pred CCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCc
Q 046899 105 SPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSI 184 (407)
Q Consensus 105 dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 184 (407)
||.+|+|+.... ....+..|..+ +..+.-.....++++++.|+++.+||..++
T Consensus 256 ~G~~riw~~~G~-l~~tl~~HkgP--------------------------I~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 256 DGEARIWNKDGN-LISTLGQHKGP--------------------------IFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CcEEEEEecCch-hhhhhhccCCc--------------------------eEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 999999998753 34444444333 222223344567899999999999999999
Q ss_pred CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899 185 GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264 (407)
Q Consensus 185 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i 264 (407)
+..+.+.-|..+-..+.|-.+. -|++++.|+.|+++-+.... +..++.+|.++|.++.|+| .+.+|+++++|+++
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~--P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~Tl 383 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR--PVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTL 383 (524)
T ss_pred eEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC--cceeeecccCceEEEEECC-CCceEEEecCCCee
Confidence 9999999999887889997765 69999999999999998777 6888889999999999999 89999999999999
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC--------CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS--------SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIH 336 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--------~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 336 (407)
+||.+.. ......+.+|+..|..+.|+|.|+ ..+++++.|++|++||+..+.++.++..|..||++
T Consensus 384 kiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 384 KIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred EeeecCC------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 9999988 788999999999999999999654 34679999999999999999999999999999999
Q ss_pred CCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 337 PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 337 ~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
++|||+ +.++++|+.||.|+||+.. +++.++.+++- +.|+.|.|++
T Consensus 458 vafS~~------------------g~ylAsGs~dg~V~iws~~------~~~l~~s~~~~-~~Ifel~Wn~ 503 (524)
T KOG0273|consen 458 VAFSPN------------------GRYLASGSLDGCVHIWSTK------TGKLVKSYQGT-GGIFELCWNA 503 (524)
T ss_pred EEecCC------------------CcEEEecCCCCeeEecccc------chheeEeecCC-CeEEEEEEcC
Confidence 999999 9999999999999999999 89999988864 4689999986
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=259.04 Aligned_cols=272 Identities=21% Similarity=0.309 Sum_probs=243.7
Q ss_pred eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899 74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG 153 (407)
Q Consensus 74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~ 153 (407)
....++.+|..+|+.+-|+| +-.++++++.|++|++||..+++....+.+|...+. |+.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~---------di~----------- 157 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVF---------DIS----------- 157 (406)
T ss_pred Cchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhcccccee---------EEE-----------
Confidence 55667778999999999999 888999999999999999999999888888876532 211
Q ss_pred CCcccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899 154 SAKSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 232 (407)
+.+.| ..+++.+.|-.+++||..+ .+++..+.+|...|.+++|-|.| .++++++.|.+|+.|++.++. ++
T Consensus 158 ---~~a~G---k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--cv 228 (406)
T KOG0295|consen 158 ---FDASG---KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--CV 228 (406)
T ss_pred ---EecCc---cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccce--eE
Confidence 11122 4577888888899999977 67788889999999999999999 899999999999999999999 89
Q ss_pred eeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC-------------
Q 046899 233 KVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD------------- 299 (407)
Q Consensus 233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------------- 299 (407)
.++.+|...|..++.+. ||.++|+++.|.++++|-+.+ +++...++.|+.+|.+++|.|.
T Consensus 229 ~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 229 KTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT------KQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred EeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEecc------chhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 99999999999999999 999999999999999999999 8889999999999999999762
Q ss_pred -CCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 300 -KSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 300 -~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
+..++++++.|++|++||+.++.++.++.+|+..|.+++|+|- |.+|++...|++++|||+
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~------------------Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG------------------GKYILSCADDKTLRVWDL 363 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC------------------CeEEEEEecCCcEEEEEe
Confidence 2235679999999999999999999999999999999999886 999999999999999999
Q ss_pred cccccCChHHHHHHHhhcccceeEeecc
Q 046899 379 IDLIYRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 379 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
+ ..+|++.+..|...|++++|-
T Consensus 364 ~------~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 364 K------NLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred c------cceeeeccCCCcceeEEEecC
Confidence 9 899999999999999999984
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-36 Score=243.78 Aligned_cols=233 Identities=19% Similarity=0.245 Sum_probs=209.6
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
...+.+|++.|..++..+.+.+++++++.|.++.+|++...
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d--------------------------------------- 48 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD--------------------------------------- 48 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC---------------------------------------
Confidence 34456899999999999888899999999999999999754
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 235 (407)
|.+.+.+++.+.+|...|..+..++++ +++++++.|+++++||+.+++ ....+
T Consensus 49 ------------------------d~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~--~t~~f 101 (315)
T KOG0279|consen 49 ------------------------DIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE--STRRF 101 (315)
T ss_pred ------------------------ccccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCc--EEEEE
Confidence 224566788999999999999999999 899999999999999999997 68888
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--CCCEEEEEEcCCC-CCEEEEeeCCCe
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--SAAVLCVQWSPDK-SSVFGSSAEDGI 312 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~-~~ll~s~~~d~~ 312 (407)
.+|...|.+++|+| +.+.+++|+.|.+|++|++.. .+..++..+ .+.|+|+.|+|+. ..+|++++.|++
T Consensus 102 ~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 102 VGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred EecCCceEEEEecC-CCceeecCCCcceeeeeeecc-------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 99999999999999 899999999999999999984 777777654 7899999999983 335689999999
Q ss_pred EEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHH
Q 046899 313 LNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAE 392 (407)
Q Consensus 313 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 392 (407)
|++||+++.+....+.+|.+.++.+++||| +...++|..||.+.+||++ +++++..
T Consensus 174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpD------------------GslcasGgkdg~~~LwdL~------~~k~lys 229 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPD------------------GSLCASGGKDGEAMLWDLN------EGKNLYS 229 (315)
T ss_pred EEEEccCCcchhhccccccccEEEEEECCC------------------CCEEecCCCCceEEEEEcc------CCceeEe
Confidence 999999999999999999999999999999 8899999999999999999 7888776
Q ss_pred HhhcccceeEeeccC
Q 046899 393 LDKFKSHIFGCDKSC 407 (407)
Q Consensus 393 ~~~h~~~v~~~~~s~ 407 (407)
+. |...|.+++|||
T Consensus 230 l~-a~~~v~sl~fsp 243 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSP 243 (315)
T ss_pred cc-CCCeEeeEEecC
Confidence 65 788999999997
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-37 Score=261.97 Aligned_cols=284 Identities=22% Similarity=0.306 Sum_probs=242.4
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
+...|.-.+.|.|. +.+|+..+.+.+|.++.++ -++-+..|+.+|+++.|++ ++.++++|+.+|.|++
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--------FEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--------FETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKY 164 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceee--------HHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEe
Confidence 35667788999996 8999999999999654222 1223337999999999999 9999999999999999
Q ss_pred EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899 111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY 190 (407)
Q Consensus 111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 190 (407)
|+..-.. +..+..|. ...+..++++..++.+++++.|+.++|||....+....+
T Consensus 165 Wqpnmnn-Vk~~~ahh-------------------------~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 165 WQPNMNN-VKIIQAHH-------------------------AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred cccchhh-hHHhhHhh-------------------------hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 9987432 22222221 122333445556788999999999999999999998999
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
.+|.-.|.+++|+|.. .++++||.|..|++||.++++ ++.++..|+..|..+.|+| ++++|+|++.|..+++||+|
T Consensus 219 ~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 219 RGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred ccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehh
Confidence 9999999999999998 799999999999999999999 8889999999999999999 78999999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhcccc
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETK 349 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~ 349 (407)
+ .+.++++++|+..|+++.|+|-...||++|+.||.|..|.+...+.+..++ +|+..|++++|.|-
T Consensus 295 ~------mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl------- 361 (464)
T KOG0284|consen 295 T------MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL------- 361 (464)
T ss_pred H------hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc-------
Confidence 8 788999999999999999999988899999999999999999656665554 68999999999885
Q ss_pred ceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 350 LLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+..+++|+.|.++++|.-..
T Consensus 362 -----------Ghil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 362 -----------GHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred -----------ceeEeecCCCcceeeeccCC
Confidence 88899999999999997653
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-36 Score=276.43 Aligned_cols=266 Identities=17% Similarity=0.311 Sum_probs=221.9
Q ss_pred hccCceEEEeeeecccCCCeeEEEEee---cccccCccceEEEEeec--------------cc---------CcccCCcc
Q 046899 20 KSLVPVLYDWLANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSE--------------QF---------NEEARSPF 73 (407)
Q Consensus 20 ~~~~~~~y~~l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~--------------~~---------~~~~~~~~ 73 (407)
+.+.|.++=+-.+. ..--...+++.+ .++.|-.|..+++|..+ +. +..+....
T Consensus 363 ~~~lpSic~YT~~n-t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHN-TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEE-cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 55666654322222 121223345654 37777778889999766 00 11122233
Q ss_pred eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899 74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG 153 (407)
Q Consensus 74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~ 153 (407)
.....+.||.++|...+|+| +.++|++++.|++||+|.+.+..++..+.+|..+ +||+.
T Consensus 442 ~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P---------VwdV~----------- 500 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP---------VWDVQ----------- 500 (707)
T ss_pred ceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcc---------eeeEE-----------
Confidence 34455889999999999999 8899999999999999999999999888888776 67765
Q ss_pred CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899 154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK 233 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 233 (407)
+.+...++++++.|++.++|......+.+.+.+|...|.|++|+|+. +++++||.|.+|++||+.++. .++
T Consensus 501 ------F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~--~VR 571 (707)
T KOG0263|consen 501 ------FAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGN--SVR 571 (707)
T ss_pred ------ecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCc--EEE
Confidence 33445668999999999999999999999999999999999999999 899999999999999999999 789
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
.+.+|.++|.+++|+| +|++|++|+.||.|.+||+.+ +.++..+.+|++.|.++.|+.+|. +||+|+.|++|
T Consensus 572 iF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV 643 (707)
T KOG0263|consen 572 IFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLAN------GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSV 643 (707)
T ss_pred EecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCC------CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeE
Confidence 9999999999999999 999999999999999999999 899999999999999999999999 66899999999
Q ss_pred EEEeCCCCCcc
Q 046899 314 NIWDHEKIGEK 324 (407)
Q Consensus 314 ~vwd~~~~~~~ 324 (407)
++||+......
T Consensus 644 ~lWD~~~~~~~ 654 (707)
T KOG0263|consen 644 RLWDLTKVIEL 654 (707)
T ss_pred EEEEchhhccc
Confidence 99999875443
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-35 Score=265.76 Aligned_cols=344 Identities=17% Similarity=0.216 Sum_probs=277.9
Q ss_pred eeeecccCCCeeEEEEeec--ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC
Q 046899 29 WLANHNLVWPSLSCRWGPQ--LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP 106 (407)
Q Consensus 29 ~l~~~~~~~p~~s~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg 106 (407)
+|+++.+.-|.-+++|.|+ +...+-.+.+.+|-.+....+.-.|+.......+|...|.+|.|+. +.++|++|+.|-
T Consensus 89 Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~ 167 (893)
T KOG0291|consen 89 VLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDL 167 (893)
T ss_pred eeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc-CCceEEeccccc
Confidence 5677788889999999997 4455556668899776444445677777778889999999999998 899999999999
Q ss_pred cEEEEeCcCCCC--cccccCcCCCCCCC--------------CCcEEEEecccccccc----------------------
Q 046899 107 DVLIWDVEAQPN--RHAVLGAADSHPDL--------------DQSVVLWSIQDHVSAL---------------------- 148 (407)
Q Consensus 107 ~i~vwd~~~~~~--~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~---------------------- 148 (407)
++|+|+++..+. ...+.+|...+... ||.+.+|.........
T Consensus 168 s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 168 SARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred eEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 999999987765 44556676654332 9999999877210000
Q ss_pred --------------ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe
Q 046899 149 --------------AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG 214 (407)
Q Consensus 149 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~ 214 (407)
......+.......-...++++-++|...+++++....++.+.-...+|..++|+..| ..+|.|+
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~ 326 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWIAFGC 326 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEEEEcC
Confidence 0000112223333334567778899999999999999999998888899999999999 7777776
Q ss_pred C-CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEE
Q 046899 215 D-DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLC 293 (407)
Q Consensus 215 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~ 293 (407)
. -|.+-+|+.++.. .+...++|...+++++++| ||.++|||+.||.|+|||.+. +-+..+|..|+..|+.
T Consensus 327 ~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S------gfC~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 327 SKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS------GFCFVTFTEHTSGVTA 397 (893)
T ss_pred CccceEEEEEeeccc--eeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccC------ceEEEEeccCCCceEE
Confidence 5 4899999999887 6788889999999999999 999999999999999999999 8999999999999999
Q ss_pred EEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee-e
Q 046899 294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK-V 372 (407)
Q Consensus 294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~ 372 (407)
++|+..|+.+ .+++.||+||.||+...++.+++..... + ..++.....-+..+.+|+.|. .
T Consensus 398 v~f~~~g~~l-lssSLDGtVRAwDlkRYrNfRTft~P~p-~----------------QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 398 VQFTARGNVL-LSSSLDGTVRAWDLKRYRNFRTFTSPEP-I----------------QFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred EEEEecCCEE-EEeecCCeEEeeeecccceeeeecCCCc-e----------------eeeEEEEcCCCCEEEeeccceEE
Confidence 9999999966 5999999999999999988888865332 1 111233333377888999998 9
Q ss_pred EEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 373 LEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
|+||++. +|+++..+.||.++|.+++|++
T Consensus 460 IfvWS~q------TGqllDiLsGHEgPVs~l~f~~ 488 (893)
T KOG0291|consen 460 IFVWSVQ------TGQLLDILSGHEGPVSGLSFSP 488 (893)
T ss_pred EEEEEee------cCeeeehhcCCCCcceeeEEcc
Confidence 9999999 9999999999999999999985
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=247.15 Aligned_cols=270 Identities=19% Similarity=0.278 Sum_probs=226.9
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC-CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ-PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
...+.+|++.|+.+.|+| ++..||||+.|..|.+|++... +....+.+|...+. +
T Consensus 40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM---------~-------------- 95 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM---------E-------------- 95 (338)
T ss_pred hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeE---------e--------------
Confidence 445668999999999999 9999999999999999996644 33344455544321 1
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
+......+.+++++.|.+++.||+++++.+..+++|..-|+.+.-+..|+.++.+++.|+++++||+|+.. .+++
T Consensus 96 ---l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t 170 (338)
T KOG0265|consen 96 ---LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKT 170 (338)
T ss_pred ---eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhc
Confidence 22334456788999999999999999999999999999999999777888899999999999999999877 4555
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
+ ..+.+++++.|.. .+..+.+|+-|+.|++||+|. ...+.++.+|.++|+.+..+|+|.+++ +-+.|.+++
T Consensus 171 ~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~------~d~~~~lsGh~DtIt~lsls~~gs~ll-snsMd~tvr 241 (338)
T KOG0265|consen 171 F-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK------NDGLYTLSGHADTITGLSLSRYGSFLL-SNSMDNTVR 241 (338)
T ss_pred c-ccceeEEEEEecc-cccceeeccccCceeeecccc------CcceEEeecccCceeeEEeccCCCccc-cccccceEE
Confidence 4 4567899999988 888999999999999999999 899999999999999999999999986 999999999
Q ss_pred EEeCCCCC----cccccccCC----CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCCh
Q 046899 315 IWDHEKIG----EKQDYGELK----YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPE 386 (407)
Q Consensus 315 vwd~~~~~----~~~~~~~~~----~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~ 386 (407)
+||++... ++..+.++. ......+|||+ +..|.+|+.|..+++||.. .
T Consensus 242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~------------------~~~i~ags~dr~vyvwd~~------~ 297 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN------------------GTKITAGSADRFVYVWDTT------S 297 (338)
T ss_pred EEEecccCCCCceEEEeecchhhhhhhcceeeccCC------------------CCccccccccceEEEeecc------c
Confidence 99998542 244555532 22445677777 8899999999999999998 6
Q ss_pred HHHHHHHhhcccceeEeeccC
Q 046899 387 EEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 387 ~~~~~~~~~h~~~v~~~~~s~ 407 (407)
...+..+.||.+.|.+++|.|
T Consensus 298 r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 298 RRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ccEEEEcCCcceeEEEeeecC
Confidence 788999999999999999986
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=233.57 Aligned_cols=274 Identities=20% Similarity=0.225 Sum_probs=230.3
Q ss_pred CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899 71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAA 150 (407)
Q Consensus 71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~ 150 (407)
.|......+-.|+++|++++|+- +|++.+|++.|.+|++|+...+.+++++.+|...+.+
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD------------------- 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLD------------------- 64 (307)
T ss_pred CcchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeee-------------------
Confidence 34444445557999999999998 9999999999999999999999999998887665322
Q ss_pred CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
.+....++.+++++.|..+.+||..+++.++.+.+|.+.|+.++|+.+. ..+++|+.|.++++||.|+....
T Consensus 65 -------~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 65 -------AALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred -------ccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCC
Confidence 1233445678889999999999999999999999999999999999988 89999999999999999998877
Q ss_pred ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
+++.+......|.++..+ +..+++|+.||+++.||+|. +......-+ .+|+++.|++++...| .++.|
T Consensus 137 PiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~------G~l~sDy~g--~pit~vs~s~d~nc~L-a~~l~ 204 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK------GTLSSDYFG--HPITSVSFSKDGNCSL-ASSLD 204 (307)
T ss_pred ccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec------ceeehhhcC--CcceeEEecCCCCEEE-Eeecc
Confidence 788888889999999985 47899999999999999998 766666654 5899999999999876 78899
Q ss_pred CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899 311 GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL 390 (407)
Q Consensus 311 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~ 390 (407)
+++++.|-.+++.++.+.+|...-+.+. .++......+++||.||.|++||+. ++..+
T Consensus 205 stlrLlDk~tGklL~sYkGhkn~eykld----------------c~l~qsdthV~sgSEDG~Vy~wdLv------d~~~~ 262 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHKNMEYKLD----------------CCLNQSDTHVFSGSEDGKVYFWDLV------DETQI 262 (307)
T ss_pred ceeeecccchhHHHHHhcccccceeeee----------------eeecccceeEEeccCCceEEEEEec------cceee
Confidence 9999999999999999999876422222 2222335678899999999999998 67788
Q ss_pred HHHhhcccc-eeEeecc
Q 046899 391 AELDKFKSH-IFGCDKS 406 (407)
Q Consensus 391 ~~~~~h~~~-v~~~~~s 406 (407)
..+..|... |.++++-
T Consensus 263 sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 263 SKLSVVSTVIVTDLSCH 279 (307)
T ss_pred eeeccCCceeEEeeecc
Confidence 888888877 7777663
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-34 Score=231.84 Aligned_cols=273 Identities=17% Similarity=0.207 Sum_probs=216.5
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA 126 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 126 (407)
.+.+++.|..+-+|- +..++..--.....+.||...|+.+..++ ++++.++++.|+++|+||+.+++..+.+.+|.
T Consensus 30 ~l~sasrDk~ii~W~---L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWK---LTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred eEEEcccceEEEEEE---eccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence 366788898888883 33332222233445558999999999998 99999999999999999999998888887776
Q ss_pred CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-ccCEEEEEECCC
Q 046899 127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-EDTVEDVQFCPS 205 (407)
Q Consensus 127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~ 205 (407)
..+ ...+....+..+++|+.|.++++|+............. .+.|+|+.|+|.
T Consensus 106 ~dV--------------------------lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 106 KDV--------------------------LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred Cce--------------------------EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCC
Confidence 542 22234445567899999999999998765554444332 789999999998
Q ss_pred C-CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899 206 S-AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF 284 (407)
Q Consensus 206 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~ 284 (407)
. ..++++++.|++|++||+++.+ ....+.+|.+.++.+.++| ||.+.++|+.||.+.+||++. ++.++++
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~--l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~------~k~lysl 230 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE------GKNLYSL 230 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcc--hhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC------CceeEec
Confidence 3 3689999999999999999888 6778889999999999999 999999999999999999999 8888888
Q ss_pred cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC---------CCcccCCCCcCcchhccccceeeee
Q 046899 285 EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL---------KYPIIHPAYSSDMLDIETKLLTSIG 355 (407)
Q Consensus 285 ~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~---------~~~v~~~~~s~d~~~~~~~~~~~~~ 355 (407)
. |...|.+++|+|+...| +...+..|+|||+.+...+..+.-. .....+++||+|
T Consensus 231 ~-a~~~v~sl~fspnrywL--~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d------------- 294 (315)
T KOG0279|consen 231 E-AFDIVNSLCFSPNRYWL--CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD------------- 294 (315)
T ss_pred c-CCCeEeeEEecCCceeE--eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC-------------
Confidence 6 78899999999998754 3444667999999998777655321 111233455555
Q ss_pred EeeCccceeeeEEEeeeEEEeecc
Q 046899 356 MHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 356 ~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..+++|..|+.|++|.+.
T Consensus 295 -----G~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 295 -----GQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -----CcEEEeeecCCcEEEEEee
Confidence 8899999999999999875
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-34 Score=248.66 Aligned_cols=276 Identities=18% Similarity=0.298 Sum_probs=230.4
Q ss_pred CeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 38 PSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 38 p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
...+++|.. .+++|.+++.+|+| +.+......+-.|+++|.+|.|+. .|++|++++.|+++.+||..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw---------~~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIW---------NKDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEE---------ecCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEecc
Confidence 344778964 59999999999999 333333445557999999999998 89999999999999999998
Q ss_pred CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecc
Q 046899 115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHE 194 (407)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 194 (407)
++...+.+.-|....-+ .-|-- +..+++.+.++.+.++.+....++.++.+|.
T Consensus 307 ~g~~~q~f~~~s~~~lD-----VdW~~----------------------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~ 359 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALD-----VDWQS----------------------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHH 359 (524)
T ss_pred CceEEEeeeeccCCccc-----eEEec----------------------CceEeecCCCceEEEEEecCCCcceeeeccc
Confidence 88766665544433111 11221 1246677788888888888888999999999
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC--------CCCEEEEEeCCCcEEE
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH--------DVNLILTGSADNSIHM 266 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~--------~~~~l~tg~~dg~i~v 266 (407)
++|.+|.|+|.+ .+|++++.|++++||...... ....+.+|...|..+.|+|. .+..+++++.|++|++
T Consensus 360 g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 360 GEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred CceEEEEECCCC-ceEEEecCCCeeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 999999999999 899999999999999988777 67888999999999999983 3458999999999999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 346 (407)
||+.. +.++.+|..|..+|.+++|+|+|+|+ |+|+.||.|.+|+++.++..+.+.+... |..++|+.+
T Consensus 437 wdv~~------gv~i~~f~kH~~pVysvafS~~g~yl-AsGs~dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn~~---- 504 (524)
T KOG0273|consen 437 WDVES------GVPIHTLMKHQEPVYSVAFSPNGRYL-ASGSLDGCVHIWSTKTGKLVKSYQGTGG-IFELCWNAA---- 504 (524)
T ss_pred EEccC------CceeEeeccCCCceEEEEecCCCcEE-EecCCCCeeEeccccchheeEeecCCCe-EEEEEEcCC----
Confidence 99999 99999999999999999999999986 7999999999999999988888876444 667777666
Q ss_pred cccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+++|.....|+.+++-|+.
T Consensus 505 --------------G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 505 --------------GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred --------------CCEEEEEecCCCceEEEec
Confidence 7888888899999988875
No 20
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-34 Score=228.33 Aligned_cols=241 Identities=18% Similarity=0.331 Sum_probs=213.2
Q ss_pred CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 70 RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 70 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
+.+.+.+.....-.+.+..++|++...+.+++++.||++++||....
T Consensus 47 ~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--------------------------------- 93 (311)
T KOG0277|consen 47 DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--------------------------------- 93 (311)
T ss_pred CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC---------------------------------
Confidence 56667778888889999999999988899999999999999995422
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
..+++.+++|..+|.++.|++.....+++++.|++|++||...++
T Consensus 94 ----------------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~- 138 (311)
T KOG0277|consen 94 ----------------------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN- 138 (311)
T ss_pred ----------------------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-
Confidence 135677889999999999999877889999999999999998777
Q ss_pred CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
.+.++.+|...|....|+|..++++++++.||.+++||++.+ ++.+. +..|...+.+..|+.-.+++++||+.
T Consensus 139 -Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 139 -SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred -ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----CceeE-EEeccceeEeecccccCCcEEEecCC
Confidence 688899999999999999999999999999999999999985 34444 88999999999999999999999999
Q ss_pred CCeEEEEeCCCCCcc-cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH
Q 046899 310 DGILNIWDHEKIGEK-QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE 388 (407)
Q Consensus 310 d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~ 388 (407)
|+.|+.||+++.+.. ..+.+|...|..+.|||- |...|++++.|=++||||... ...
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph-----------------~~~lLaSasYDmT~riw~~~~-----~ds 269 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH-----------------HASLLASASYDMTVRIWDPER-----QDS 269 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcc-----------------hhhHhhhccccceEEeccccc-----chh
Confidence 999999999987654 567789999999999886 478899999999999999863 567
Q ss_pred HHHHHhhcccceeEeeccC
Q 046899 389 VLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 389 ~~~~~~~h~~~v~~~~~s~ 407 (407)
++.++.-|+..|.+++||.
T Consensus 270 ~~e~~~~HtEFv~g~Dws~ 288 (311)
T KOG0277|consen 270 AIETVDHHTEFVCGLDWSL 288 (311)
T ss_pred hhhhhhccceEEecccccc
Confidence 8899999999999999984
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=242.62 Aligned_cols=278 Identities=19% Similarity=0.305 Sum_probs=235.2
Q ss_pred CeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 38 PSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 38 p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
|...+-+.| ..++++.+.++++| ++ ++.. . ...+.||.+.|..|+|.. .|++||+++.|-.+++||..
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~---D~--~tg~--~-e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVF---DT--ETGE--L-ERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEE---Ec--cchh--h-hhhhhccccceeEEEEec-CccEEEecCCccchhheeHH
Confidence 333344444 46678888899999 22 2221 1 344558999999999998 88999999999999999998
Q ss_pred C-CCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec
Q 046899 115 A-QPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH 193 (407)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 193 (407)
+ -++.+...+|...+ ..+.+|-+ | ..+++++.|.+++.|+..++-++.++.+|
T Consensus 181 ~~~~c~ks~~gh~h~v----S~V~f~P~-------------------g---d~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGV----SSVFFLPL-------------------G---DHILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred HHHHHHHHhcCcccce----eeEEEEec-------------------C---CeeeecccccceeEEecccceeEEeccCc
Confidence 7 35566666665543 23333332 2 45888999999999999999999999999
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC--------------CCCEEEEEe
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH--------------DVNLILTGS 259 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------~~~~l~tg~ 259 (407)
...|..++.+.+| .++++++.|.+|++|-+.+++ +...+..|.-+|-|++|.|. .+.++++++
T Consensus 235 ~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 235 SEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred hHhEEEEEecCCe-eEEEecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 9999999999999 899999999999999999988 67788899999999999873 236999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC
Q 046899 260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY 339 (407)
Q Consensus 260 ~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 339 (407)
.|++|++||+.+ +.++.++.+|...|..++|+|.|+||+ |+.+|+++++||+++.+++.+++.|..-+++++|
T Consensus 312 rDktIk~wdv~t------g~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 312 RDKTIKIWDVST------GMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred ccceEEEEeccC------CeEEEEEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 999999999999 999999999999999999999999985 9999999999999999999999999999999888
Q ss_pred cCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 340 SSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 340 s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
..+ ..++++|+.|-++++|..
T Consensus 385 h~~------------------~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKT------------------APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCC------------------CceEEeccccceeeeeec
Confidence 666 569999999999999964
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=241.11 Aligned_cols=277 Identities=17% Similarity=0.264 Sum_probs=236.2
Q ss_pred cceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEE
Q 046899 72 PFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVV 137 (407)
Q Consensus 72 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~ 137 (407)
|........+|.+-|.|+++-| ..++++||+.|++|+|||+.++....++.+|...+..+ |+.|+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred cceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 3344445568999999999999 78899999999999999999999888888877655544 99999
Q ss_pred EEecccc--ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC
Q 046899 138 LWSIQDH--VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD 215 (407)
Q Consensus 138 ~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~ 215 (407)
.||++.. ++.+..+-.++..+........+++++.|..+++||+.+...+..+.+|..+|..+.+.|.+ ..+++|+.
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~ 297 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSH 297 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC-CceEEecC
Confidence 9999876 45667777777777777778889999999999999999999999999999999999999988 47999999
Q ss_pred CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEE
Q 046899 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQ 295 (407)
Q Consensus 216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~ 295 (407)
|++|++||++.++ ....+..|...|.+++.+| ....||+++.|. |+-|++.. +..+..+.+|++-|++++
T Consensus 298 D~tvrlWDl~agk--t~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~------g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 298 DSTVRLWDLRAGK--TMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQWKLPE------GEFLQNLSGHNAIINTLS 367 (460)
T ss_pred CceEEEeeeccCc--eeEeeecccceeeEEecCC-chhhhhccCCcc-ceeccCCc------cchhhccccccceeeeee
Confidence 9999999999998 6778889999999999999 889999998774 89999988 888889999999999999
Q ss_pred EcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCC--------CcccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899 296 WSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK--------YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL 367 (407)
Q Consensus 296 ~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~ 367 (407)
...|+- +++|++.|.+.+||.+++-..+.....- ..|++.+| ..-+.+|+++
T Consensus 368 ~nsD~v--~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f------------------Dktg~rlit~ 427 (460)
T KOG0285|consen 368 VNSDGV--LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF------------------DKTGSRLITG 427 (460)
T ss_pred eccCce--EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEee------------------cccCceEEec
Confidence 998884 4699999999999999887766653221 22333333 2337799999
Q ss_pred EEeeeEEEeeccc
Q 046899 368 TMVKVLEIWRMID 380 (407)
Q Consensus 368 ~~d~~i~iwd~~~ 380 (407)
..|.+|++|.-.+
T Consensus 428 eadKtIk~~keDe 440 (460)
T KOG0285|consen 428 EADKTIKMYKEDE 440 (460)
T ss_pred cCCcceEEEeccc
Confidence 9999999998764
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=250.32 Aligned_cols=265 Identities=21% Similarity=0.335 Sum_probs=221.6
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
-+-.|+.|.|.| +|+.|+||+..|.+.+|+..+-.....++.|...+.. ..| .
T Consensus 95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~-----m~w---------------------s 147 (464)
T KOG0284|consen 95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRT-----MKW---------------------S 147 (464)
T ss_pred cccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhccccee-----EEE---------------------c
Confidence 456899999999 9999999999999999998654333333444333211 112 1
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 241 (407)
.....++++..+|.|++|+............|...|++++|+|.+ ..|++++.||+|+|||....+ ....+.+|.-.
T Consensus 148 ~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~k--ee~vL~GHgwd 224 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPK--EERVLRGHGWD 224 (464)
T ss_pred cCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCc--hhheeccCCCC
Confidence 222457888999999999976554444444455999999999988 899999999999999999887 56677999999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
|.+++|+| ...++++|+.|..|++||.++ +.++.++.+|+..|..+.|.|++.+| +|+|.|..++++|+++.
T Consensus 225 VksvdWHP-~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl~~~f~~n~N~L-lt~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 225 VKSVDWHP-TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVLAVKFNPNGNWL-LTGSKDQSCKVFDIRTM 296 (464)
T ss_pred cceeccCC-ccceeEEccCCceeEeecCCC------cchhhhhhhccceEEEEEEcCCCCee-EEccCCceEEEEehhHh
Confidence 99999999 778999999999999999999 99999999999999999999999876 69999999999999999
Q ss_pred CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh-hcccce
Q 046899 322 GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD-KFKSHI 400 (407)
Q Consensus 322 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v 400 (407)
+.+.++.+|...++++.|+|- +.+.+++|+.||.|..|.+. ..+++..+. +|...|
T Consensus 297 kEl~~~r~Hkkdv~~~~WhP~-----------------~~~lftsgg~Dgsvvh~~v~------~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 297 KELFTYRGHKKDVTSLTWHPL-----------------NESLFTSGGSDGSVVHWVVG------LEEPLGEIPPAHDGEI 353 (464)
T ss_pred HHHHHhhcchhhheeeccccc-----------------cccceeeccCCCceEEEecc------ccccccCCCcccccce
Confidence 999999999999999999885 37788899999999999997 455655555 799999
Q ss_pred eEeeccC
Q 046899 401 FGCDKSC 407 (407)
Q Consensus 401 ~~~~~s~ 407 (407)
++++|-|
T Consensus 354 wsl~~hP 360 (464)
T KOG0284|consen 354 WSLAYHP 360 (464)
T ss_pred eeeeccc
Confidence 9999854
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-35 Score=244.33 Aligned_cols=259 Identities=15% Similarity=0.267 Sum_probs=221.3
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
....|.|+.+ +...+++|..|.+|+|||..+..+...+.+|... +...+...
T Consensus 196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS-------VLCLqyd~------------------ 247 (499)
T KOG0281|consen 196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS-------VLCLQYDE------------------ 247 (499)
T ss_pred cCCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCc-------EEeeeccc------------------
Confidence 4567999987 4457999999999999999999999999998654 33333322
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-CceeeecccCc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-PAVKVEKAHNA 240 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 240 (407)
..+++|++|.++++||.++++++.++.+|...|..+.|+. .++++++.|.++.+||+..... .+...+.+|..
T Consensus 248 ---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 248 ---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred ---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence 2478899999999999999999999999999999999985 5899999999999999987652 13345679999
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.|+.+.|+. +++++++.|.+|++|++.+ ++.++++.+|...|.|+++ .++ ++++|+.|.+|++||++.
T Consensus 322 aVNvVdfd~---kyIVsASgDRTikvW~~st------~efvRtl~gHkRGIAClQY--r~r-lvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 322 AVNVVDFDD---KYIVSASGDRTIKVWSTST------CEFVRTLNGHKRGIACLQY--RDR-LVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred heeeecccc---ceEEEecCCceEEEEeccc------eeeehhhhcccccceehhc--cCe-EEEecCCCceEEEEeccc
Confidence 999999964 6999999999999999999 9999999999999999988 566 568999999999999999
Q ss_pred CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc---cCChHHHHHHHhhcc
Q 046899 321 IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI---YRPEEEVLAELDKFK 397 (407)
Q Consensus 321 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~h~ 397 (407)
+.+++.+++|..-|.++.|. ...|++|..||+|+|||+...- .....-|+..+..|+
T Consensus 390 G~cLRvLeGHEeLvRciRFd--------------------~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs 449 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFD--------------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 449 (499)
T ss_pred cHHHHHHhchHHhhhheeec--------------------CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc
Confidence 99999999999999999882 6789999999999999997421 112334899999999
Q ss_pred cceeEeecc
Q 046899 398 SHIFGCDKS 406 (407)
Q Consensus 398 ~~v~~~~~s 406 (407)
+.|+.+-|.
T Consensus 450 gRVFrLQFD 458 (499)
T KOG0281|consen 450 GRVFRLQFD 458 (499)
T ss_pred ceeEEEeec
Confidence 999988773
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.1e-33 Score=260.88 Aligned_cols=267 Identities=22% Similarity=0.318 Sum_probs=224.3
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA 159 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
|...|.++.|++ +|+.+++++.|+.+++|+....+ ....+.+|...+.+ +.+.+
T Consensus 158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~-----------------------~~fs~ 213 (456)
T KOG0266|consen 158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSD-----------------------VAFSP 213 (456)
T ss_pred ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceee-----------------------eEECC
Confidence 478999999999 88899999999999999997666 44444444433211 12222
Q ss_pred cCCCCCccccccCCCCCCCCCC-CCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 160 SGGANSKNASKSGGNGDKPLES-PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
.+ ..+++++.|+++++||. ..+..++++++|...|++++|+|++ +++++|+.|++|++||+++++ +...+.+|
T Consensus 214 d~---~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~--~~~~l~~h 287 (456)
T KOG0266|consen 214 DG---SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE--CVRKLKGH 287 (456)
T ss_pred CC---cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe--EEEeeecc
Confidence 33 36888999999999999 5568889999999999999999999 999999999999999999988 78999999
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC--ceeeecCCCCC--EEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGS--PIHKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~h~~~--v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
.+.|++++|++ ++++|++++.||.|++||+.+ +. ++..+..+..+ +++++|+|++.+++ +++.|+.++
T Consensus 288 s~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~d~~~~ 359 (456)
T KOG0266|consen 288 SDGISGLAFSP-DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASLDRTLK 359 (456)
T ss_pred CCceEEEEECC-CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCceeEEEECCCCcEEE-EecCCCeEE
Confidence 99999999999 999999999999999999999 66 56777776655 99999999999885 999999999
Q ss_pred EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
+||+..+..+..+.+|...+.+ .|+ ..+...+..+++|+.|+.|++|++. ++..+..+.
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~i~sg~~d~~v~~~~~~------s~~~~~~l~ 418 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRC-IFS--------------PTLSTGGKLIYSGSEDGSVYVWDSS------SGGILQRLE 418 (456)
T ss_pred EEEccCCcceeeecccCCccee-Eec--------------ccccCCCCeEEEEeCCceEEEEeCC------ccchhhhhc
Confidence 9999999999998888775311 111 1123338899999999999999999 899999999
Q ss_pred hc-ccceeEeeccC
Q 046899 395 KF-KSHIFGCDKSC 407 (407)
Q Consensus 395 ~h-~~~v~~~~~s~ 407 (407)
+| ...|..+++++
T Consensus 419 ~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 419 GHSKAAVSDLSSHP 432 (456)
T ss_pred CCCCCceeccccCC
Confidence 99 88888888764
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-34 Score=253.13 Aligned_cols=264 Identities=16% Similarity=0.206 Sum_probs=224.6
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
.|...|-++.++| ....++++-.+|.|.|||.++...+..+.-...++. ....
T Consensus 11 ~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvR--------------------------a~kf 63 (794)
T KOG0276|consen 11 SRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVR--------------------------AAKF 63 (794)
T ss_pred ccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchh--------------------------hhee
Confidence 4899999999999 667888999999999999998876665543322211 1111
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
-.-.+.+++|+.|..|++++.++++.+..+.+|.+.|.||+.||.. .+++++|.|-+|++||.+..- .+.+++.+|..
T Consensus 64 iaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~w-a~~qtfeGH~H 141 (794)
T KOG0276|consen 64 IARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEW-ACEQTFEGHEH 141 (794)
T ss_pred eeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCce-eeeeEEcCcce
Confidence 1122458889999999999999999999999999999999999999 589999999999999998653 37889999999
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC--CCEEEEeeCCCeEEEEeC
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~ll~s~~~d~~i~vwd~ 318 (407)
.|.+++|+|.|.+.||+++.|++|++|.+.. ..+..++++|...|+|+.|-+.| ++| +||++|.+|+|||.
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGVN~Vdyy~~gdkpyl-IsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGVNCVDYYTGGDKPYL-ISGADDLTIKVWDY 214 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCC------CCCceeeeccccCcceEEeccCCCcceE-EecCCCceEEEeec
Confidence 9999999999999999999999999999998 78999999999999999998755 677 59999999999999
Q ss_pred CCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccc
Q 046899 319 EKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKS 398 (407)
Q Consensus 319 ~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~ 398 (407)
.+..+++++++|...|..+.|.|. -..|++|+.||++|||+-. +-.....+.---.
T Consensus 215 Qtk~CV~TLeGHt~Nvs~v~fhp~------------------lpiiisgsEDGTvriWhs~------Ty~lE~tLn~gle 270 (794)
T KOG0276|consen 215 QTKSCVQTLEGHTNNVSFVFFHPE------------------LPIIISGSEDGTVRIWNSK------TYKLEKTLNYGLE 270 (794)
T ss_pred chHHHHHHhhcccccceEEEecCC------------------CcEEEEecCCccEEEecCc------ceehhhhhhcCCc
Confidence 999999999999999999999877 4679999999999999987 4445555554455
Q ss_pred ceeEee
Q 046899 399 HIFGCD 404 (407)
Q Consensus 399 ~v~~~~ 404 (407)
.|+|++
T Consensus 271 RvW~I~ 276 (794)
T KOG0276|consen 271 RVWCIA 276 (794)
T ss_pred eEEEEe
Confidence 666665
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-33 Score=241.63 Aligned_cols=326 Identities=17% Similarity=0.214 Sum_probs=250.5
Q ss_pred EEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899 41 SCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 41 s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 116 (407)
+|++-| .++|++.|+.+.+|-+ .|+.-......|..-|+|++|+| +|+++||++.||+|.+||-.++
T Consensus 152 s~~~KpsRPfRi~T~sdDn~v~ffeG--------PPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 152 SVDFKPSRPFRIATGSDDNTVAFFEG--------PPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred eeeccCCCceEEEeccCCCeEEEeeC--------CCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc
Confidence 555544 3889999999999922 23333344446999999999999 8999999999999999999999
Q ss_pred CCccccc---CcCCCC------CCC--------CCcEEEEeccccccccccCCCCC-cccccCCC--CCccccccCCCCC
Q 046899 117 PNRHAVL---GAADSH------PDL--------DQSVVLWSIQDHVSALAAEPGSA-KSTASGGA--NSKNASKSGGNGD 176 (407)
Q Consensus 117 ~~~~~~~---~~~~~~------~~~--------d~~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i 176 (407)
+.+..+. .|...+ |+. |.++++||+.+....-....... .-...|.+ ...+++.+.+|.+
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 9887776 344332 222 99999999998744333222211 11111111 3567889999999
Q ss_pred CCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce---------ee-------------
Q 046899 177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV---------KV------------- 234 (407)
Q Consensus 177 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~------------- 234 (407)
..++.....+...+.+|...|+++..+|++ .+|++|+.||.|.-||..++....+ ..
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence 999999999999999999999999999999 8999999999999999876521000 00
Q ss_pred -------------------------------------------------eccc--------CcceEEEEecCCCCCEEEE
Q 046899 235 -------------------------------------------------EKAH--------NADIHCVDWNPHDVNLILT 257 (407)
Q Consensus 235 -------------------------------------------------~~~~--------~~~v~~l~~~~~~~~~l~t 257 (407)
++.+ .-...+++++| ++..++.
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaV 460 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAV 460 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEE
Confidence 0000 01235788888 8999999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccC
Q 046899 258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIH 336 (407)
Q Consensus 258 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~ 336 (407)
|+.||.|++|.+.... ......+..|.++|++++|+||+.+| |+|...+.+-+||+.+.+....... |...|.+
T Consensus 461 GG~Dgkvhvysl~g~~----l~ee~~~~~h~a~iT~vaySpd~~yl-a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~ 535 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDE----LKEEAKLLEHRAAITDVAYSPDGAYL-AAGDASRKVVLYDVASREVKTNRWAFHTAKINC 535 (603)
T ss_pred ecccceEEEEEecCCc----ccceeeeecccCCceEEEECCCCcEE-EEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence 9999999999998622 23334556799999999999999976 7999999999999998776544444 8899999
Q ss_pred CCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899 337 PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 337 ~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 405 (407)
++|||+ +..+++|++|.+|.||++.. ..+.+....+|...|+.|+|
T Consensus 536 ~aWsP~------------------n~~vATGSlDt~Viiysv~k-----P~~~i~iknAH~~gVn~v~w 581 (603)
T KOG0318|consen 536 VAWSPN------------------NKLVATGSLDTNVIIYSVKK-----PAKHIIIKNAHLGGVNSVAW 581 (603)
T ss_pred EEeCCC------------------ceEEEeccccceEEEEEccC-----hhhheEeccccccCceeEEE
Confidence 999999 88999999999999999973 34446667789999999988
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=238.79 Aligned_cols=263 Identities=18% Similarity=0.335 Sum_probs=205.8
Q ss_pred EEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc
Q 046899 42 CRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH 120 (407)
Q Consensus 42 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~ 120 (407)
+|+-. .+++|.-|+++++|-. ....-...+.||+|.|.|+.|. .++|++|+.|.+|+|||+++++++.
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~--------n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDK--------NSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred EEecchhhhcccccCceEEecc--------ccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhh
Confidence 34433 3788999999999911 1112234566999999999984 4699999999999999999999999
Q ss_pred cccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC---ceeeEeecccCE
Q 046899 121 AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG---ARGKYLGHEDTV 197 (407)
Q Consensus 121 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v 197 (407)
++..|...+-.+ .+. +...++.+.|.++.+||+.... +.+.+.+|...|
T Consensus 272 tlihHceaVLhl-------rf~---------------------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 272 TLIHHCEAVLHL-------RFS---------------------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred HHhhhcceeEEE-------EEe---------------------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 988876543211 000 1234556666666666665443 335567999999
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899 198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV 277 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~ 277 (407)
+.+.|+. +++++++.|.+|++|++.+.+ .+.++.+|...|-|+.+ .++++++|+.|.+|++||+..
T Consensus 324 NvVdfd~---kyIVsASgDRTikvW~~st~e--fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~------ 389 (499)
T KOG0281|consen 324 NVVDFDD---KYIVSASGDRTIKVWSTSTCE--FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC------ 389 (499)
T ss_pred eeecccc---ceEEEecCCceEEEEecccee--eehhhhcccccceehhc---cCeEEEecCCCceEEEEeccc------
Confidence 9999975 589999999999999999998 89999999999999988 569999999999999999999
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc---------cccCCCcccCCCCcCcchhccc
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD---------YGELKYPIIHPAYSSDMLDIET 348 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~---------~~~~~~~v~~~~~s~d~~~~~~ 348 (407)
+.+++.+++|+.-|.++.|. .+.+ ++|+.||+|++||+......+. +..|.+.|..+.|
T Consensus 390 G~cLRvLeGHEeLvRciRFd--~krI-VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--------- 457 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFD--NKRI-VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--------- 457 (499)
T ss_pred cHHHHHHhchHHhhhheeec--Ccee-eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---------
Confidence 99999999999999999995 3435 6999999999999997654432 2334444444444
Q ss_pred cceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
..-.|++.+.|.+|-|||+.+
T Consensus 458 -----------D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 458 -----------DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred -----------cceEEEeccCCCeEEEEEcCC
Confidence 356799999999999999974
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=222.49 Aligned_cols=262 Identities=20% Similarity=0.293 Sum_probs=213.9
Q ss_pred CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
-.+.++|.++ +++++.|+..-+|-+ ...++ .....--..-|..++|+| .++++|+|+-|....||++.
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs---~TtnK-----~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDS---FTTNK-----VHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEc---ccccc-----eeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecc
Confidence 4567899884 899999999999922 11111 111112456899999999 99999999999999999998
Q ss_pred CC------CCcccccCcCCCCCCC-------------CCcEEEEeccccccc--cccCCCCCcccccCC-CCCccccccC
Q 046899 115 AQ------PNRHAVLGAADSHPDL-------------DQSVVLWSIQDHVSA--LAAEPGSAKSTASGG-ANSKNASKSG 172 (407)
Q Consensus 115 ~~------~~~~~~~~~~~~~~~~-------------d~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 172 (407)
+. +..+.+.+|.....+- |.+..+||++++... +..|.+.+..+...+ ....+++++.
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 66 2334566776544322 899999999998664 455555554444443 5677999999
Q ss_pred CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899 173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 252 (407)
|+..++||+..+.+++++.+|+..|++++|.|+| .-|++|+.|++.++||+|..+.........-..+|++++|+. .|
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 9999999999999999999999999999999999 789999999999999999987433333334456899999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
++|++|..|..+.+||.-. ++.+..+.+|+..|+++..+|||.- ++|||.|.++|||.
T Consensus 286 RlLfagy~d~~c~vWDtlk------~e~vg~L~GHeNRvScl~~s~DG~a-v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLK------GERVGVLAGHENRVSCLGVSPDGMA-VATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccc------cceEEEeeccCCeeEEEEECCCCcE-EEecchhHheeecC
Confidence 9999999999999999988 8999999999999999999999995 58999999999994
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-31 Score=215.94 Aligned_cols=277 Identities=18% Similarity=0.249 Sum_probs=218.9
Q ss_pred eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC---Cccccc-CcCCCCCCCCCcEEEEeccccccccc
Q 046899 74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP---NRHAVL-GAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~---~~~~~~-~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
.....+.+|.+.|..++|+|-.|.+||||+.|+.||+|+..++. +...+. +|..
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkr---------------------- 62 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKR---------------------- 62 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchh----------------------
Confidence 44556678999999999999448899999999999999998532 111111 1111
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCC--CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESP--SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG 227 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 227 (407)
.+...+..+....+++++.|.++.||.-. ..+++.++.+|+..|.|++|+++| ++||+++.|..|-||.+...
T Consensus 63 ----sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 63 ----SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ----eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCC
Confidence 11112222233468889999999998664 456788999999999999999999 89999999999999999854
Q ss_pred C-CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899 228 S-TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 228 ~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s 306 (407)
. ..+...++.|...|..+.|+| ...+|+++++|.+|++|+-..... ..++.++.+|+..|.+++|+|.|..| ++
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd---W~c~~tl~g~~~TVW~~~F~~~G~rl-~s 212 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD---WECVQTLDGHENTVWSLAFDNIGSRL-VS 212 (312)
T ss_pred CcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC---eeEEEEecCccceEEEEEecCCCceE-EE
Confidence 3 336678899999999999999 889999999999999998763111 78999999999999999999999866 79
Q ss_pred eeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC
Q 046899 307 SAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385 (407)
Q Consensus 307 ~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~ 385 (407)
++.|++++||-... .++ .|..+++.+++. +..|++++.|+.|+|+........+
T Consensus 213 ~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--------------------~~~IaS~ggD~~i~lf~~s~~~d~p 267 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--------------------NGVIASGGGDDAIRLFKESDSPDEP 267 (312)
T ss_pred ecCCcceEeeeecc-----CcchhcccceEeeeec--------------------ccceEeccCCCEEEEEEecCCCCCc
Confidence 99999999998662 222 244556666661 5679999999999999998766777
Q ss_pred hHHHHHH-HhhcccceeEeeccC
Q 046899 386 EEEVLAE-LDKFKSHIFGCDKSC 407 (407)
Q Consensus 386 ~~~~~~~-~~~h~~~v~~~~~s~ 407 (407)
..+++.. -..|...|++|+|+|
T Consensus 268 ~~~l~~~~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 268 SWNLLAKKEGAHEVDVNSVQWNP 290 (312)
T ss_pred hHHHHHhhhcccccccceEEEcC
Confidence 7777774 446999999999975
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=242.93 Aligned_cols=328 Identities=17% Similarity=0.239 Sum_probs=247.7
Q ss_pred CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
...+++|..+ +++++.|...|+|-.. .........+.+|.+.|.+.-|.. +..-+.|.+.||.+.+|.+.
T Consensus 147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~------~~k~~~~~~l~gHkd~VvacfF~~-~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 147 DITSIDWSDDSRLLVTGSRDLSARLFGVD------GNKNLFTYALNGHKDYVVACFFGA-NSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred ceeEEEeccCCceEEeccccceEEEEEec------cccccceEeccCCCcceEEEEecc-CcceEEEEecCceEEEEEec
Confidence 5667899664 8889999999999433 222255667779999999998887 77789999999999999988
Q ss_pred CCCCccc-----ccCcCCCC--------------------------CCC-----------------CCcEEEEecccccc
Q 046899 115 AQPNRHA-----VLGAADSH--------------------------PDL-----------------DQSVVLWSIQDHVS 146 (407)
Q Consensus 115 ~~~~~~~-----~~~~~~~~--------------------------~~~-----------------d~~i~~w~~~~~~~ 146 (407)
..+.... ..+..... ..+ .|...++.+..-..
T Consensus 220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l 299 (893)
T KOG0291|consen 220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL 299 (893)
T ss_pred CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence 3321100 00000000 000 44444555444322
Q ss_pred --ccccCCCCCcccccCCCCCcccccc-CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 046899 147 --ALAAEPGSAKSTASGGANSKNASKS-GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD 223 (407)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 223 (407)
.+......+..+........++.++ .-|.+.+|+.++..-+...++|...+++++++|+| .++|+|++||+|++||
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEe
Confidence 1222222222333333334455544 44789999999988888889999999999999999 8999999999999999
Q ss_pred cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCC
Q 046899 224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSS 302 (407)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ 302 (407)
.+++- |..++..|++.|+.+.|+. .++.+++.+.||+|+.||+.. ....++|... .....|++..|.|.
T Consensus 379 ~~Sgf--C~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkR------YrNfRTft~P~p~QfscvavD~sGe- 448 (893)
T KOG0291|consen 379 TQSGF--CFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKR------YRNFRTFTSPEPIQFSCVAVDPSGE- 448 (893)
T ss_pred ccCce--EEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecc------cceeeeecCCCceeeeEEEEcCCCC-
Confidence 99999 8999999999999999999 999999999999999999998 7888888763 34578889999999
Q ss_pred EEEEeeCCC-eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899 303 VFGSSAEDG-ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL 381 (407)
Q Consensus 303 ll~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~ 381 (407)
|++.|+.|. .|.+|++++++.+..+.+|.+||.+++|+|+ +..|+++|-|.+||+||+-+
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~------------------~~~LaS~SWDkTVRiW~if~- 509 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD------------------GSLLASGSWDKTVRIWDIFS- 509 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc------------------cCeEEeccccceEEEEEeec-
Confidence 445666664 5999999999999999999999999999998 88999999999999999973
Q ss_pred ccCChHHHHHHHhhcccceeEeeccC
Q 046899 382 IYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
....+..++ +..-|++|+|+|
T Consensus 510 ----s~~~vEtl~-i~sdvl~vsfrP 530 (893)
T KOG0291|consen 510 ----SSGTVETLE-IRSDVLAVSFRP 530 (893)
T ss_pred ----cCceeeeEe-eccceeEEEEcC
Confidence 112233333 566778888875
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-33 Score=251.00 Aligned_cols=268 Identities=19% Similarity=0.240 Sum_probs=220.3
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC----Ccccc
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP----NRHAV 122 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~----~~~~~ 122 (407)
.++.+++....|++ +.+...+....||+..|.++.... .|.+|+||+.|.++++|.++.+. +....
T Consensus 338 ~laVATNs~~lr~y---------~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 338 HLAVATNSPELRLY---------TLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eEEEEeCCCceEEE---------ecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 36667777778888 344555667779999999999554 67899999999999999885443 33344
Q ss_pred cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc---------eeeEeec
Q 046899 123 LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA---------RGKYLGH 193 (407)
Q Consensus 123 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---------~~~~~~~ 193 (407)
.+|...+..+ .+ .-.-.+.+++++.|.++++|++...+. ..+...|
T Consensus 408 ~gH~~svgav----a~---------------------~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 408 NGHTNSVGAV----AG---------------------SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred ccccccccee----ee---------------------cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 4555443211 11 001124567788888888888765211 1123469
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
...|+|++.+|++ .++|+||.|.+.+||++.+.. ....+.+|...|.|+.|+| ..+.+||++.|++|+||.+.+
T Consensus 463 dKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~-- 536 (775)
T KOG0319|consen 463 DKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST-- 536 (775)
T ss_pred cccccceEecCCC-ceEEecccccceeeecccCce--EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecc--
Confidence 9999999999999 899999999999999999766 7889999999999999999 778999999999999999999
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceee
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS 353 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 353 (407)
+.++.+|.+|+..|..+.|-.+|.+|+ |++.||-|++|++++..++.++..|...|++++-+++
T Consensus 537 ----fSClkT~eGH~~aVlra~F~~~~~qli-S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~----------- 600 (775)
T KOG0319|consen 537 ----FSCLKTFEGHTSAVLRASFIRNGKQLI-SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL----------- 600 (775)
T ss_pred ----ceeeeeecCccceeEeeeeeeCCcEEE-eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc-----------
Confidence 899999999999999999999999875 9999999999999999999999999999999988887
Q ss_pred eeEeeCccceeeeEEEeeeEEEeec
Q 046899 354 IGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 354 ~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
...+++|+.||.|.+|.=
T Consensus 601 -------~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 601 -------LDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred -------cceeEecCCCeEEEEeec
Confidence 778999999999999954
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=244.85 Aligned_cols=281 Identities=18% Similarity=0.253 Sum_probs=238.8
Q ss_pred CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC-CCCcccccCcCCCCCCC--------------CCc
Q 046899 71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA-QPNRHAVLGAADSHPDL--------------DQS 135 (407)
Q Consensus 71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~--------------d~~ 135 (407)
.|........+|+..|+++.|+|..+.+|++|+.|+.|+||++.. +.+++++.+|...+.+. |+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 466667777899999999999999999999999999999999987 78899999998777665 999
Q ss_pred EEEEeccccccccccCCCC----CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEE
Q 046899 136 VVLWSIQDHVSALAAEPGS----AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFC 211 (407)
Q Consensus 136 i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 211 (407)
+++||.+++.....++.+. +.+.+.+ ...+++|+.++.|+.||+.+++.++.+..|-+.|..+.|-+.+ ..|+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFi 358 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG-RRFI 358 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC-ceEe
Confidence 9999999998777666553 4455555 5788999999999999999999999999999999999999999 8999
Q ss_pred EEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC--C
Q 046899 212 SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS--A 289 (407)
Q Consensus 212 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~--~ 289 (407)
+++.|+++++|+.+.+.. .......+.-...++..+| .+.+++.-+.|..|.+|.+..... ......+++|. +
T Consensus 359 ssSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHSVAG 433 (503)
T ss_pred eeccCccEEEEEcCCCcc-chhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccc---cCHhhhhcceeccC
Confidence 999999999999998762 1122222333456899999 889999999999999999876432 34456777875 4
Q ss_pred CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE
Q 046899 290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM 369 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 369 (407)
.-..+.|||||++| ++|..||.+.+||.++.+.+..+.+|++++..+.|.|-. ...+++++-
T Consensus 434 ys~~v~fSpDG~~l-~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e-----------------~Skvat~~w 495 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTL-CSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE-----------------PSKVATCGW 495 (503)
T ss_pred ceeeEEEcCCCCeE-EeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC-----------------cceeEeccc
Confidence 46678999999977 699999999999999999999999999999999987752 778999999
Q ss_pred eeeEEEee
Q 046899 370 VKVLEIWR 377 (407)
Q Consensus 370 d~~i~iwd 377 (407)
||.|++|+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 99999996
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-32 Score=218.53 Aligned_cols=239 Identities=25% Similarity=0.397 Sum_probs=205.1
Q ss_pred EEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899 41 SCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 41 s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 116 (407)
.+.|.+ .+++++.|+..|||. ...|...+.....|..+|.++.|++...+.+++++.|++|++|+....
T Consensus 65 dV~Wse~~e~~~~~a~GDGSLrl~d-------~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 65 DVAWSENHENQVIAASGDGSLRLFD-------LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred EeeecCCCcceEEEEecCceEEEec-------cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 456766 377889999999992 233444444555899999999999988899999999999999998643
Q ss_pred CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC
Q 046899 117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT 196 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 196 (407)
+.++++.+|...
T Consensus 138 --------------------------------------------------------------------~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 138 --------------------------------------------------------------------NSVQTFNGHNSC 149 (311)
T ss_pred --------------------------------------------------------------------cceEeecCCccE
Confidence 235667789999
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~ 276 (407)
|...+|+|..+++|++++.|+.+++||++... ....+..|..++.|+.|+..+.++++||+.|+.|++||+|+.
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~---- 223 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL---- 223 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCC--ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc----
Confidence 99999999988999999999999999999876 345588999999999999989999999999999999999997
Q ss_pred CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCCCCcCcchhccccceeeee
Q 046899 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIG 355 (407)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~ 355 (407)
..++.++.+|.-.|+.|+|||....+|||++.|=++|+||..... .+.++..|..-+.++.||+-
T Consensus 224 -r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~------------- 289 (311)
T KOG0277|consen 224 -RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF------------- 289 (311)
T ss_pred -cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc-------------
Confidence 488999999999999999999998899999999999999999554 45667778888888888764
Q ss_pred EeeCccceeeeEEEeeeEEEeec
Q 046899 356 MHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 356 ~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
...++++.+=|+.++||+.
T Consensus 290 ----~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 290 ----DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----cCceeeecccccceeeecc
Confidence 1778999999999999984
No 35
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=226.26 Aligned_cols=285 Identities=27% Similarity=0.439 Sum_probs=201.1
Q ss_pred CceEEEeeeecccCCCeeEEEEeec--------------ccc-----cCccceEEEEeec----------------ccCc
Q 046899 23 VPVLYDWLANHNLVWPSLSCRWGPQ--------------LEQ-----ATYKNRQRLYLSE----------------QFNE 67 (407)
Q Consensus 23 ~~~~y~~l~~~~~~~p~~s~~~~~~--------------~~~-----~~~~~~~~i~~~~----------------~~~~ 67 (407)
.|..|.+++.....||+++++-.|+ ++. ...++.+-++-.. ..+.
T Consensus 56 DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edd 135 (440)
T KOG0302|consen 56 DPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDD 135 (440)
T ss_pred CHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccc
Confidence 5778999999999999999998763 111 1223333333222 0111
Q ss_pred ccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccc
Q 046899 68 EARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS 146 (407)
Q Consensus 68 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~ 146 (407)
+++..+....+.++|.+.++.++-.+. +..+.|+-+..|.|.||++...- ..+......+.. .......
T Consensus 136 edD~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~~~~~~~--------s~~~Pl~ 205 (440)
T KOG0302|consen 136 EDDRKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALSEPGLEVKD--------SEFRPLF 205 (440)
T ss_pred hhhccccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhcCccccccc--------cccCceE
Confidence 122234446677889999999998875 55678888899999999987432 111111111000 0001111
Q ss_pred ccccCCCCCcccccCCC-CCccccccCCCCCCCCCCCCcCc---eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899 147 ALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESPSIGA---RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW 222 (407)
Q Consensus 147 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 222 (407)
.+..+......+..... ...+++|...+.|++|...++.- ...+.+|+..|..|+|+|.....|++||.||+|+||
T Consensus 206 t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIW 285 (440)
T KOG0302|consen 206 TFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIW 285 (440)
T ss_pred EecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEE
Confidence 12222221111111111 12256677778888888766542 234567999999999999988899999999999999
Q ss_pred EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 302 (407)
|+|.+.+........|.+.|+.|+|+. ...+||+|+.||+++|||+|..+. ++++.+|+.|..+|++|.|+|....
T Consensus 286 DiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~---~~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 286 DIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS---GQPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred EecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC---CCcceeEEeccCCeeEEEeccccCc
Confidence 999985444445589999999999999 667999999999999999999776 6899999999999999999999888
Q ss_pred EEEEeeCCCeEEEEeCCCC
Q 046899 303 VFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~~~ 321 (407)
+|++++.|.+|.+||+...
T Consensus 362 ~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEeccCCCcEEEEEeecc
Confidence 8999999999999999853
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.6e-31 Score=225.15 Aligned_cols=280 Identities=19% Similarity=0.323 Sum_probs=212.1
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCC--eEEEEeeCCCcEEEEeCcCCCCcc----
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNS--KIVATHTDSPDVLIWDVEAQPNRH---- 120 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~tg~~dg~i~vwd~~~~~~~~---- 120 (407)
.+.+++||+..|+| +..-.......||.++|.+++|.-.+. ..|++++.|.++++|.++.++...
T Consensus 117 ~IltgsYDg~~riW---------d~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~ 187 (423)
T KOG0313|consen 117 WILTGSYDGTSRIW---------DLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK 187 (423)
T ss_pred eEEEeecCCeeEEE---------ecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence 48899999999999 333344666679999999888865332 369999999999999998775432
Q ss_pred cccCcCCCCCCC--------------CCcEEEEecccccc-ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC
Q 046899 121 AVLGAADSHPDL--------------DQSVVLWSIQDHVS-ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG 185 (407)
Q Consensus 121 ~~~~~~~~~~~~--------------d~~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 185 (407)
.-.+|...+..+ |..+.+|+...... .+........ ...-+-=....+.
T Consensus 188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr----------------k~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR----------------KKQKREKEGGTRT 251 (423)
T ss_pred HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh----------------hhhhhhhcccccC
Confidence 223565544332 77777777332210 0000000000 0000000113456
Q ss_pred ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
++..+.+|.++|.++.|++. ..+++++.|.+|+.||+.++. ....+ ..+..++|++.+| ..++|++|+.|..|+
T Consensus 252 P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~--~~~~~-~~~ksl~~i~~~~-~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGG--LKSTL-TTNKSLNCISYSP-LSKLLASGSSDRHIR 325 (423)
T ss_pred ceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccc--ceeee-ecCcceeEeeccc-ccceeeecCCCCcee
Confidence 77888999999999999984 489999999999999999998 44444 4567789999999 899999999999999
Q ss_pred EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCCCCcCcch
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHPAYSSDML 344 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~ 344 (407)
+||.|+... .....+|.+|...|.++.|+|...++|++++.|+++++||+++.+ .+..+.+|...|.++.|+.
T Consensus 326 l~DPR~~~g---s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--- 399 (423)
T KOG0313|consen 326 LWDPRTGDG---SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--- 399 (423)
T ss_pred ecCCCCCCC---ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC---
Confidence 999998542 345678999999999999999999999999999999999999987 7788889988888888743
Q ss_pred hccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 345 DIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++|+.|.+|+|+.-.
T Consensus 400 ----------------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 ----------------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ----------------CceEEeccCcceEEEeccc
Confidence 5689999999999999754
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.3e-32 Score=246.13 Aligned_cols=242 Identities=15% Similarity=0.207 Sum_probs=195.6
Q ss_pred CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEE
Q 046899 133 DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212 (407)
Q Consensus 133 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s 212 (407)
.+++++|+..+..+......+......+-+.+..++.|...|.+.++|+.+...+.+.++|.+.|..++.+|++ ..+++
T Consensus 393 ~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT 471 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVT 471 (888)
T ss_pred CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEE
Confidence 35566666655544444333333333333344456667777777777777777777777899999999999999 78999
Q ss_pred EeCCCcEEEEEcCCCC-----CCcee-----eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899 213 VGDDSCLILWDARSGS-----TPAVK-----VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 213 ~~~dg~i~iwd~~~~~-----~~~~~-----~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
||.|.+|++||+.--. +.... ....-...|.|+.++| |+++|+++-.|.+|+||-+.+ .+...
T Consensus 472 ~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt------lKFfl 544 (888)
T KOG0306|consen 472 GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT------LKFFL 544 (888)
T ss_pred ecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc------eeeee
Confidence 9999999999975311 10111 1123457899999999 999999999999999999999 78888
Q ss_pred eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc
Q 046899 283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR 362 (407)
Q Consensus 283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~ 362 (407)
++.+|.-||.|+..+||+. +++|||.|++|++|-+.-+.+..++.+|+..|.++.|-|. ..
T Consensus 545 sLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~------------------~~ 605 (888)
T KOG0306|consen 545 SLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK------------------TH 605 (888)
T ss_pred eecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc------------------ce
Confidence 9999999999999999999 5579999999999999999999999999999999999776 67
Q ss_pred eeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 363 LLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 363 ~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
...+++-|+.|+-||-. .-++++.+.||...|+|+|.++
T Consensus 606 ~FFt~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred eEEEecCcceEEeechh------hhhhheeeccchheeeeeEEcC
Confidence 78899999999999988 7899999999999999999765
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.6e-31 Score=217.57 Aligned_cols=284 Identities=16% Similarity=0.220 Sum_probs=232.0
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
..+-..+.+.|.|+ ++++++|..+-+|.. +.+.++ .-++.+|.++|..+.|.+ +++.|++++.|.+|+.
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv--~gdceN-----~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNV--YGDCEN-----FWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRG 116 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEec--cccccc-----eeeeccccceeEeeeecc-CCCEEEEecCCceEEE
Confidence 34556677889885 899999998888821 222222 233349999999999999 8899999999999999
Q ss_pred EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899 111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY 190 (407)
Q Consensus 111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 190 (407)
||.+++++.....+|...+...+ . .-.-...+.+++.|+++++||+.+...++++
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~-------p------------------~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLD-------P------------------SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred EecccceeeehhccccceeeecC-------c------------------cccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 99999999999888876643220 0 0011123556888999999999988888877
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
. ...+++++.|..++ ..+.+|+-|+.|++||++... ....+.+|...|+.+..+| ++.++.+-+.|.++++||++
T Consensus 172 ~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 172 E-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred c-cceeEEEEEecccc-cceeeccccCceeeeccccCc--ceEEeecccCceeeEEecc-CCCccccccccceEEEEEec
Confidence 4 45679999999888 789999999999999999888 7889999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCceeeecCCC----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899 271 KLTSDGVGSPIHKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 346 (407)
..... ..++..+.+|. ......+|+|++..+ ..|+.|+.+.+||......+..+++|.+.|.+++|.|.
T Consensus 247 p~~p~--~R~v~if~g~~hnfeknlL~cswsp~~~~i-~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~---- 319 (338)
T KOG0265|consen 247 PFAPS--QRCVKIFQGHIHNFEKNLLKCSWSPNGTKI-TAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPT---- 319 (338)
T ss_pred ccCCC--CceEEEeecchhhhhhhcceeeccCCCCcc-ccccccceEEEeecccccEEEEcCCcceeEEEeeecCC----
Confidence 74432 24477777653 245677899999976 69999999999999998999999999999999999887
Q ss_pred cccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIW 376 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw 376 (407)
...|.+++.|.+|++=
T Consensus 320 --------------e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 320 --------------EPIILSCSSDKTIYLG 335 (338)
T ss_pred --------------CcEEEEeccCceeEee
Confidence 7889999999998763
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.3e-31 Score=234.00 Aligned_cols=267 Identities=25% Similarity=0.415 Sum_probs=218.9
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CCC--------CCcEEEEeccccc-
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PDL--------DQSVVLWSIQDHV- 145 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~--------d~~i~~w~~~~~~- 145 (407)
+|.++|++++|+| ++++|++++.||.|++|++.+......+..+...+ ++. ++.+.+|++....
T Consensus 7 ~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 7 GHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred ccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 7999999999999 78899999999999999998776554444443332 111 8999999998742
Q ss_pred -cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 046899 146 -SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDA 224 (407)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 224 (407)
..+..+...+..+........+++++.++.+.+||..+++....+..|...|.+++|+|++ .++++++.|+.|++||+
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDL 164 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEc
Confidence 2333333333333333333455556669999999999888888888899999999999987 78888888999999999
Q ss_pred CCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899 225 RSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF 304 (407)
Q Consensus 225 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll 304 (407)
++++ ....+..|...+.+++|+| +++.+++++.||.|++||++. ++++..+..|...+.+++|+|++. ++
T Consensus 165 ~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~~ 234 (289)
T cd00200 165 RTGK--CVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHENGVNSVAFSPDGY-LL 234 (289)
T ss_pred cccc--cceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCC------CceecchhhcCCceEEEEEcCCCc-EE
Confidence 9777 5666678888999999999 888899999999999999998 788888888999999999999966 55
Q ss_pred EEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899 305 GSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR 377 (407)
Q Consensus 305 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd 377 (407)
++++.|+.|++||+.+.+....+..+..++.+++|+++ +..+++++.|+.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD------------------GKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC------------------CCEEEEecCCCeEEecC
Confidence 67777999999999988888888888888888888887 78899999999999996
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=212.52 Aligned_cols=251 Identities=18% Similarity=0.282 Sum_probs=198.6
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN 174 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (407)
..-+|+|++.|.+||+|...++.+..++... |+.+--..+.. . ...++++...
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~-------dsqVNrLeiTp----------------d----k~~LAaa~~q 61 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHP-------DSQVNRLEITP----------------D----KKDLAAAGNQ 61 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecC-------ccceeeEEEcC----------------C----cchhhhccCC
Confidence 4569999999999999999999988776544 22222222221 1 1234455566
Q ss_pred CCCCCCCCCcC--ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899 175 GDKPLESPSIG--ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252 (407)
Q Consensus 175 ~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 252 (407)
.|+++|+.+.. ++.++.+|+..|+++.|..+| +.+++|++||+++|||+|... +.+. ..|.++|+++..+| +.
T Consensus 62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--~qR~-~~~~spVn~vvlhp-nQ 136 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--CQRN-YQHNSPVNTVVLHP-NQ 136 (311)
T ss_pred eeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--cchh-ccCCCCcceEEecC-Cc
Confidence 77888877655 588999999999999999999 899999999999999999966 4444 46789999999999 88
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC------ccc
Q 046899 253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG------EKQ 325 (407)
Q Consensus 253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~------~~~ 325 (407)
..|++|..+|.|++||+++ ..+...+. .-..+|.++...|+|.++ +.+..-|...+|++-..+ .+.
T Consensus 137 teLis~dqsg~irvWDl~~------~~c~~~liPe~~~~i~sl~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGE------NSCTHELIPEDDTSIQSLTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred ceEEeecCCCcEEEEEccC------CccccccCCCCCcceeeEEEcCCCcEE-EEecCCccEEEEEccCCCccccceEhh
Confidence 8999999999999999998 44444443 345689999999999966 677788999999987632 334
Q ss_pred ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 326 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 405 (407)
.+..|..-+...-+||| +.+|++.|.|.+++||+.... -..-..+.+|..-|++++|
T Consensus 210 k~~ah~~~il~C~lSPd------------------~k~lat~ssdktv~iwn~~~~-----~kle~~l~gh~rWvWdc~F 266 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPD------------------VKYLATCSSDKTVKIWNTDDF-----FKLELVLTGHQRWVWDCAF 266 (311)
T ss_pred heecccceEEEEEECCC------------------CcEEEeecCCceEEEEecCCc-----eeeEEEeecCCceEEeeee
Confidence 56677887888888888 899999999999999999731 1334568899999999999
Q ss_pred cC
Q 046899 406 SC 407 (407)
Q Consensus 406 s~ 407 (407)
|.
T Consensus 267 S~ 268 (311)
T KOG0315|consen 267 SA 268 (311)
T ss_pred cc
Confidence 84
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4.2e-31 Score=240.31 Aligned_cols=322 Identities=19% Similarity=0.220 Sum_probs=254.0
Q ss_pred EEeeeecccCCCeeEEEEeeccccc-----CccceEEEEeecccCcc--cCCcceeeEEEeeCCCceEEEEEeCCCCeEE
Q 046899 27 YDWLANHNLVWPSLSCRWGPQLEQA-----TYKNRQRLYLSEQFNEE--ARSPFVKKFKTIIHPGEVNRIRELPQNSKIV 99 (407)
Q Consensus 27 y~~l~~~~~~~p~~s~~~~~~~~~~-----~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 99 (407)
|..+.......-..+++|.|..-+. -.++++..+... .... ............||...|.+++++. +..++
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~-~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~ 388 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLE-NSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSILL 388 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEec-cCCCCCccccccceeeeccchhheeEEEeec-Cceee
Confidence 3334444556666788887753332 223334444221 1111 1112223356668999999999997 77777
Q ss_pred EEeeCCCcEEEEeCcCCCCcccccCc----CCCCCCC--------CCcEEEEeccccc--cccccCCCCCcccccCCCCC
Q 046899 100 ATHTDSPDVLIWDVEAQPNRHAVLGA----ADSHPDL--------DQSVVLWSIQDHV--SALAAEPGSAKSTASGGANS 165 (407)
Q Consensus 100 ~tg~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~--------d~~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~ 165 (407)
++|+. ++|++|+..+.++.+++... ..++|.. .|.+.++|+.+.. .....|.+.+-.+...+.+.
T Consensus 389 ~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 389 ASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred eecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 77765 69999999999988877553 2233332 8899999998763 34556677777777788888
Q ss_pred ccccccCCCCCCCCCCCCcCc-----ee--e-----EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899 166 KNASKSGGNGDKPLESPSIGA-----RG--K-----YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK 233 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~-----~~--~-----~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 233 (407)
.+++++.|.++++||..-... .. . ...-+..|.|++++|+| .+|+.+-.|++|++|-+.+.+ ...
T Consensus 468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlK--Ffl 544 (888)
T KOG0306|consen 468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLK--FFL 544 (888)
T ss_pred ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEeccee--eee
Confidence 899999999999998642111 11 1 11245789999999999 899999999999999999988 788
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
.+.+|.-+|.|++.+| |+.+++||+.|..|++|-+.- +.+-..+.+|.+.|.++.|.|... +|-|+|.|+.|
T Consensus 545 sLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kv 616 (888)
T KOG0306|consen 545 SLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKV 616 (888)
T ss_pred eecccccceeEEeccC-CcCeEEeccCCCceEEecccc------chhhhhhhcccCceeEEEEcccce-eEEEecCcceE
Confidence 8999999999999999 999999999999999999998 999999999999999999999776 55699999999
Q ss_pred EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+-||-.+.+.++.+.+|...|++++.+|+ |.+++++|.|.+||+|...+
T Consensus 617 KqWDg~kFe~iq~L~~H~~ev~cLav~~~------------------G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 617 KQWDGEKFEEIQKLDGHHSEVWCLAVSPN------------------GSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EeechhhhhhheeeccchheeeeeEEcCC------------------CCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999998 99999999999999998865
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.5e-31 Score=236.25 Aligned_cols=253 Identities=19% Similarity=0.293 Sum_probs=208.1
Q ss_pred EEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEee-CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899 41 SCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTII-HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 41 s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 116 (407)
++++.| -+..+-+++++.|| +|+.. ...+.+. ..-+|++..|.+ ..+++++|++|..||||+.++.
T Consensus 18 sVd~HPtePw~la~LynG~V~IW---nyetq------tmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIW---NYETQ------TMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEE---ecccc------eeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccc
Confidence 556655 36677889999999 33222 2333332 567899999998 7889999999999999999999
Q ss_pred CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeeccc
Q 046899 117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGHED 195 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~ 195 (407)
+.+..+..|.+.+. .++..+....+++++.|-.|++||.+. ..+.+++.+|+.
T Consensus 88 ekV~~FeAH~DyIR--------------------------~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIR--------------------------SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred eeeEEeecccccee--------------------------eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 98888877766532 222333445678888999999998865 457789999999
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC-CCCEEEEEeCCCcEEEEeCCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLILTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~ 274 (407)
.|.+++|+|.+++.|++++.|++|++|.+.+.. +..++.+|...|+|+++-+. +..+|++|++|.+|+|||.++
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--- 216 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--- 216 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCC--CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch---
Confidence 999999999999999999999999999998887 78899999999999999761 346999999999999999999
Q ss_pred CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899 275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPA 338 (407)
Q Consensus 275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 338 (407)
..+++++.+|...|..+.|+|.-+ |++|||.||++|+|+-.+.+...++.-.-..+++++
T Consensus 217 ---k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~ 276 (794)
T KOG0276|consen 217 ---KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA 276 (794)
T ss_pred ---HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence 899999999999999999999999 667999999999999999887777655555555544
No 43
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2.9e-32 Score=228.40 Aligned_cols=276 Identities=18% Similarity=0.289 Sum_probs=219.7
Q ss_pred CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------------CCcEEE
Q 046899 71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------------DQSVVL 138 (407)
Q Consensus 71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------d~~i~~ 138 (407)
.|+.... .||.+.|.|++=+|..-..+|+|+.||.|++||+....+...+..|...+.++ |.+++.
T Consensus 56 kPFv~~L--~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSL--DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhc--cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceee
Confidence 4444433 59999999999999555889999999999999999999999998888766655 899999
Q ss_pred Eecccccc-ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899 139 WSIQDHVS-ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS 217 (407)
Q Consensus 139 w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg 217 (407)
|.++.... .+.... .+............++....|.|||.....+++.+.-....|.++.|+|....+|++|+.|+
T Consensus 134 wk~~~~p~~tilg~s---~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKS---VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eeccCCcceeeeccc---cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 99876411 111000 00001111112233445557899999999999999988899999999999888999999999
Q ss_pred cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899 218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297 (407)
Q Consensus 218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 297 (407)
.|.+||+++..+ +... ..+..-+.|+|+| ++..|++|+.|..++.||+|.. ..++...++|.+.|.+|+|+
T Consensus 211 sIvLyD~R~~~P--l~KV-i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l-----~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 211 SIVLYDLRQASP--LKKV-ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL-----SRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred ceEEEecccCCc--ccee-eeeccccceecCc-cccceeeccccccceehhhhhh-----cccchhhcccceeEEEeccC
Confidence 999999999883 3222 2234457899999 8999999999999999999997 47899999999999999999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899 298 PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW 376 (407)
Q Consensus 298 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw 376 (407)
|.|+-+ ++||.|.+|+||.++.+.....+.. .-+.|.++.||.| ..+|++||.|+.||+|
T Consensus 282 ptG~Ef-vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D------------------skyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 282 PTGQEF-VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD------------------SKYIISGSDDGNVRLW 342 (433)
T ss_pred CCcchh-ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecc------------------ccEEEecCCCcceeee
Confidence 999965 7999999999999998766555443 3445778888888 8999999999999999
Q ss_pred ecc
Q 046899 377 RMI 379 (407)
Q Consensus 377 d~~ 379 (407)
.-.
T Consensus 343 ka~ 345 (433)
T KOG0268|consen 343 KAK 345 (433)
T ss_pred ecc
Confidence 875
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=5.7e-30 Score=224.27 Aligned_cols=320 Identities=21% Similarity=0.277 Sum_probs=233.6
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc--ccccCcCCCCCCC------------------CCc
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR--HAVLGAADSHPDL------------------DQS 135 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~------------------d~~ 135 (407)
....-+|..+++-.+|+| .|.++|+|...|+|||||....+.+ .+++.....+.++ =|.
T Consensus 52 ~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred eeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 344457999999999999 7999999999999999998764322 2222233333333 245
Q ss_pred EEEEeccccccccccCCCCCcccccCCCC-CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe
Q 046899 136 VVLWSIQDHVSALAAEPGSAKSTASGGAN-SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG 214 (407)
Q Consensus 136 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~ 214 (407)
+.+||-.+..-++..+...+.....-+.. -.+++++.|..+.+++-+..+...++..|..-|+|+.|+|+| ..|++++
T Consensus 131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~g 209 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAG 209 (603)
T ss_pred EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEec
Confidence 66677665554555554433332222221 247789999999999999999889999999999999999999 8999999
Q ss_pred CCCcEEEEEcCCCCCCceeeec---ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC-----------------
Q 046899 215 DDSCLILWDARSGSTPAVKVEK---AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS----------------- 274 (407)
Q Consensus 215 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~----------------- 274 (407)
.||+|.+||-.+++ .+..+. +|++.|.+++|+| |+..++|++.|.+++|||+.+.+-
T Consensus 210 sDgki~iyDGktge--~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGE--KVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred CCccEEEEcCCCcc--EEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 99999999999998 455554 8999999999999 999999999999999999876431
Q ss_pred --------------------CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-ccCCCc
Q 046899 275 --------------------DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-GELKYP 333 (407)
Q Consensus 275 --------------------~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~ 333 (407)
...+.++..+.+|...|+++..+|++.+|+ ||+.||.|.-||..++..-+-. ..|...
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-SgsyDG~I~~W~~~~g~~~~~~g~~h~nq 365 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-SGSYDGHINSWDSGSGTSDRLAGKGHTNQ 365 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE-eeccCceEEEEecCCccccccccccccce
Confidence 001457778889999999999999999886 9999999999999887655332 334444
Q ss_pred ccCCCCcC------------------------------------------c--------------------chhccccce
Q 046899 334 IIHPAYSS------------------------------------------D--------------------MLDIETKLL 351 (407)
Q Consensus 334 v~~~~~s~------------------------------------------d--------------------~~~~~~~~~ 351 (407)
|.+++-+. | +..+..+..
T Consensus 366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~ 445 (603)
T KOG0318|consen 366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYE 445 (603)
T ss_pred EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccc
Confidence 44433322 1 000011111
Q ss_pred eeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH--HHHHhhcccceeEeeccC
Q 046899 352 TSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV--LAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 352 ~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~h~~~v~~~~~s~ 407 (407)
.+.......+..++.|..|+.|+||.++ .+++ ...+..|++.|++|++|+
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~------g~~l~ee~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLS------GDELKEEAKLLEHRAAITDVAYSP 497 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEec------CCcccceeeeecccCCceEEEECC
Confidence 2223333345566689999999999998 3333 334668999999999996
No 45
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=242.45 Aligned_cols=299 Identities=19% Similarity=0.268 Sum_probs=238.0
Q ss_pred hhhhccCceEEEeeeecccCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCC
Q 046899 17 TQWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQN 95 (407)
Q Consensus 17 ~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 95 (407)
++|++....-|..+..+... -.+..+|.+ .+.+++.+..+++| +...-......+.||.+.|.++++.. .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~~~~s~~~tl~~~-------~~~~~~~i~~~l~GH~g~V~~l~~~~-~ 260 (537)
T KOG0274|consen 190 KNWRKLFRRGYKVLLGTDDH-VVLCLQLHDGFFKSGSDDSTLHLW-------DLNNGYLILTRLVGHFGGVWGLAFPS-G 260 (537)
T ss_pred ccccccccccceeecccCcc-hhhhheeecCeEEecCCCceeEEe-------ecccceEEEeeccCCCCCceeEEEec-C
Confidence 46666655544444432222 222335555 47788889989899 22222233344789999999999765 7
Q ss_pred CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCC
Q 046899 96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNG 175 (407)
Q Consensus 96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (407)
+++|++|+.|.+++|||+.++.+...+.+|.. +++..++.. ..+++|+.|.+
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s-------tv~~~~~~~---------------------~~~~sgs~D~t 312 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTS-------SVRCLTIDP---------------------FLLVSGSRDNT 312 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCc-------eEEEEEccC---------------------ceEeeccCCce
Confidence 88999999999999999999999999988854 445544432 12445789999
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI 255 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 255 (407)
+++|+++++..+..+.+|.++|+++..+ + .++++|+.|++|++||+++++ ++..+.+|...|.++.+.+ . ..+
T Consensus 313 VkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~-~-~~~ 385 (537)
T KOG0274|consen 313 VKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGK--CLKSLSGHTGRVYSLIVDS-E-NRL 385 (537)
T ss_pred EEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhce--eeeeecCCcceEEEEEecC-c-ceE
Confidence 9999999999999999999999999998 4 689999999999999999888 8999999999999998866 3 899
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCC-CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCc
Q 046899 256 LTGSADNSIHMFDRRKLTSDGVG-SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYP 333 (407)
Q Consensus 256 ~tg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~ 333 (407)
++|+.|++|++||+++ . +++.++.+|.+.|.++.+. +.+| ++++.|++|++||...+++++.+.+ +...
T Consensus 386 ~Sgs~D~~IkvWdl~~------~~~c~~tl~~h~~~v~~l~~~--~~~L-vs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~ 456 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRT------KRKCIHTLQGHTSLVSSLLLR--DNFL-VSSSADGTIKLWDAEEGECLRTLEGRHVGG 456 (537)
T ss_pred EeeeeccceEeecCCc------hhhhhhhhcCCcccccccccc--ccee-EeccccccEEEeecccCceeeeeccCCccc
Confidence 9999999999999999 7 8999999999999877764 4544 6999999999999999999999988 4455
Q ss_pred ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 334 IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 334 v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
|+.+++. ...+++.+.|+++++||+. .+++...+-
T Consensus 457 v~~l~~~--------------------~~~il~s~~~~~~~l~dl~------~~~~~~~l~ 491 (537)
T KOG0274|consen 457 VSALALG--------------------KEEILCSSDDGSVKLWDLR------SGTLIRTLL 491 (537)
T ss_pred EEEeecC--------------------cceEEEEecCCeeEEEecc------cCchhhhhh
Confidence 4444431 4678899999999999998 677776653
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.8e-30 Score=259.18 Aligned_cols=281 Identities=17% Similarity=0.167 Sum_probs=207.4
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
...|.+.|++++|+| ++++||||+.|+.|+|||+.......... + . .+..+... ..+...
T Consensus 479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~-~-~---------~~~~~~~~--------~~v~~l 538 (793)
T PLN00181 479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDI-H-Y---------PVVELASR--------SKLSGI 538 (793)
T ss_pred ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccccc-c-c---------ceEEeccc--------CceeeE
Confidence 345999999999999 88999999999999999986421100000 0 0 00000000 000000
Q ss_pred ccC-CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899 159 ASG-GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA 237 (407)
Q Consensus 159 ~~~-~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 237 (407)
... .....+++++.|+.+++||..+++.+..+.+|...|++++|+|.++.+|++|+.|+.|++||++++. ....+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~ 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKT 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEec
Confidence 111 1124578899999999999999999999999999999999998544899999999999999999877 4555543
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
...+.++.|++.++.+|++|+.||.|++||++.. ..++..+.+|...|.+++|. ++.+ |++++.|++|++||
T Consensus 617 -~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~-lvs~s~D~~ikiWd 688 (793)
T PLN00181 617 -KANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSST-LVSSSTDNTLKLWD 688 (793)
T ss_pred -CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCE-EEEEECCCEEEEEe
Confidence 4679999996657999999999999999999872 23677888999999999997 5564 46999999999999
Q ss_pred CCCC------CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccC-----Ch
Q 046899 318 HEKI------GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYR-----PE 386 (407)
Q Consensus 318 ~~~~------~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~-----~~ 386 (407)
++.. ..+..+.+|...+..+.|+++ +.+|++|+.|++|+||+....... ..
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------------------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~ 750 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVS------------------DGYIATGSETNEVFVYHKAFPMPVLSYKFKT 750 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCC------------------CCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence 9853 445677788887777778776 789999999999999997532100 00
Q ss_pred HHHH--HHHhhcccceeEeeccC
Q 046899 387 EEVL--AELDKFKSHIFGCDKSC 407 (407)
Q Consensus 387 ~~~~--~~~~~h~~~v~~~~~s~ 407 (407)
...+ .....|...|.+++|++
T Consensus 751 ~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 751 IDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred CCcccccccCCCCcEEEEEEEcC
Confidence 0111 12345677899999974
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.7e-30 Score=238.47 Aligned_cols=283 Identities=19% Similarity=0.295 Sum_probs=227.2
Q ss_pred CCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC
Q 046899 37 WPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV 113 (407)
Q Consensus 37 ~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 113 (407)
+....+.+.|+ +++++.++.+++|... .........+.+|...|++++|+| +++++++|+.|++|+|||+
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~------~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLE------GIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecc------cccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeec
Confidence 34444577663 7888899999999331 111012222358999999999999 8899999999999999999
Q ss_pred -cCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee
Q 046899 114 -EAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG 192 (407)
Q Consensus 114 -~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 192 (407)
..+..++.+.+|...+ ....+......+++++.|++|++||+.+++++..+.+
T Consensus 233 ~~~~~~~~~l~gH~~~v--------------------------~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~ 286 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYV--------------------------TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG 286 (456)
T ss_pred cCCCeEEEEecCCCCce--------------------------EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence 4446777777776552 1122333335688999999999999999999999999
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--ceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--DIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
|.+.|++++|++++ ++|++++.|+.|++||+.++...+...+..+.. ++++++|+| ++.+++++..|+.+++||++
T Consensus 287 hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 287 HSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred cCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEcc
Confidence 99999999999999 899999999999999999887311234444444 599999999 99999999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCC---EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC-CCcccCCCCcCcchhc
Q 046899 271 KLTSDGVGSPIHKFEGHSAA---VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL-KYPIIHPAYSSDMLDI 346 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~~ 346 (407)
. +..+..+.+|... +.+...++.+.++ .+|+.|+.|.+||+.+...++.+.+| ...+..+++++.
T Consensus 365 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~---- 433 (456)
T KOG0266|consen 365 S------GKSVGTYTGHSNLVRCIFSPTLSTGGKLI-YSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT---- 433 (456)
T ss_pred C------CcceeeecccCCcceeEecccccCCCCeE-EEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC----
Confidence 9 8889999988774 4444567788866 69999999999999999999999999 788888888776
Q ss_pred cccceeeeeEeeCccceeeeEE--EeeeEEEeecc
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLT--MVKVLEIWRMI 379 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~--~d~~i~iwd~~ 379 (407)
...+++.+ .|+.|++|...
T Consensus 434 --------------~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 --------------ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --------------cCeeeecCcCCCceEEEecCC
Confidence 77777776 78899999864
No 48
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5e-30 Score=239.21 Aligned_cols=213 Identities=21% Similarity=0.375 Sum_probs=168.5
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
+.+|.+.|++++|+|.++++|++|+.|++|++||+.+.....
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-------------------------------------- 112 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-------------------------------------- 112 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------------------------
Confidence 458999999999999778899999999999999997542110
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
...+++..+.+|...|.+++|+|.+.++|++++.|++|++||+++++ ....+..|
T Consensus 113 -----------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h 167 (493)
T PTZ00421 113 -----------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCH 167 (493)
T ss_pred -----------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCC
Confidence 01124566778999999999999875799999999999999999887 56777889
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC-EEEEEEcCCCCCEEEEe---eCCCeEE
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA-VLCVQWSPDKSSVFGSS---AEDGILN 314 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~ll~s~---~~d~~i~ 314 (407)
...|.+++|+| ++.+|++|+.|+.|++||+++ ++.+.++.+|.+. +..+.|.+++..++++| +.|+.|+
T Consensus 168 ~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEEC-CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 99999999999 999999999999999999998 8888999988765 45778999888776444 3489999
Q ss_pred EEeCCCCCccccc-ccCC-CcccCCCCcCcchhccccceeeeeEeeCccceeeeEE-EeeeEEEeecc
Q 046899 315 IWDHEKIGEKQDY-GELK-YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRMI 379 (407)
Q Consensus 315 vwd~~~~~~~~~~-~~~~-~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~~ 379 (407)
+||+++....... ..+. ..+..+.|++| +..+++++ .|+.|++||+.
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d------------------~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDED------------------TNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCC------------------CCEEEEEEeCCCeEEEEEee
Confidence 9999876543322 2111 12222334444 66677666 59999999998
No 49
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.1e-30 Score=211.39 Aligned_cols=264 Identities=13% Similarity=0.193 Sum_probs=211.2
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
-.+.|++|.|++ +|.+|++++.|-++++||..++.....+......+. .++ ..
T Consensus 13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~----~~~----------------------Ft 65 (311)
T KOG1446|consen 13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD----LAC----------------------FT 65 (311)
T ss_pred CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc----EEE----------------------Ee
Confidence 478999999998 899999999999999999999988877665544321 000 00
Q ss_pred CCCCcccc--ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 162 GANSKNAS--KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 162 ~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
.....+.. ...|.+|+..++...+.++.+.||...|+.|+.+|-+ ..|++++.|++|++||+|..+. ...+....
T Consensus 66 h~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c--qg~l~~~~ 142 (311)
T KOG1446|consen 66 HHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC--QGLLNLSG 142 (311)
T ss_pred cCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC--ceEEecCC
Confidence 01111222 2347889999999999999999999999999999998 8999999999999999998773 33333223
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
. ..++|+| .|-++|++.....|++||+|... ..|..++.- -....+.|.|+|+|++|| .+...+.+.+.
T Consensus 143 ~--pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ew~~l~FS~dGK~iL-lsT~~s~~~~l 214 (311)
T KOG1446|consen 143 R--PIAAFDP-EGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEAEWTDLEFSPDGKSIL-LSTNASFIYLL 214 (311)
T ss_pred C--cceeECC-CCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCccceeeeEEcCCCCEEE-EEeCCCcEEEE
Confidence 3 3578999 89999999988899999999976 456666654 366899999999999987 56668899999
Q ss_pred eCCCCCcccccccCCCcc---cCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899 317 DHEKIGEKQDYGELKYPI---IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL 393 (407)
Q Consensus 317 d~~~~~~~~~~~~~~~~v---~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 393 (407)
|.-.+..+.++..+...- .+..|+|| +..|++|+.||+|++|++. ++..+..+
T Consensus 215 DAf~G~~~~tfs~~~~~~~~~~~a~ftPd------------------s~Fvl~gs~dg~i~vw~~~------tg~~v~~~ 270 (311)
T KOG1446|consen 215 DAFDGTVKSTFSGYPNAGNLPLSATFTPD------------------SKFVLSGSDDGTIHVWNLE------TGKKVAVL 270 (311)
T ss_pred EccCCcEeeeEeeccCCCCcceeEEECCC------------------CcEEEEecCCCcEEEEEcC------CCcEeeEe
Confidence 999999888887655432 35667777 8999999999999999998 89999999
Q ss_pred hh-cccceeEeeccC
Q 046899 394 DK-FKSHIFGCDKSC 407 (407)
Q Consensus 394 ~~-h~~~v~~~~~s~ 407 (407)
+| +...+.++.|+|
T Consensus 271 ~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 271 RGPNGGPVSCVRFNP 285 (311)
T ss_pred cCCCCCCccccccCC
Confidence 99 788899998876
No 50
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1e-28 Score=231.49 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=181.2
Q ss_pred cccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCC
Q 046899 49 EQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS 128 (407)
Q Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~ 128 (407)
..|+..+.+++|- ... .+ ......+|.+.|.+++|+|.++++||||+.||+|+|||+.+......
T Consensus 48 ~gGG~~gvI~L~~-----~~r-~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~------- 112 (568)
T PTZ00420 48 EGGGLIGAIRLEN-----QMR-KP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK------- 112 (568)
T ss_pred CCCCceeEEEeee-----cCC-Cc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------
Confidence 3466677788882 111 22 23445589999999999996688999999999999999975421100
Q ss_pred CCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCc
Q 046899 129 HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQ 208 (407)
Q Consensus 129 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 208 (407)
....++..+.+|...|.+++|+|++..
T Consensus 113 -----------------------------------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~ 139 (568)
T PTZ00420 113 -----------------------------------------------------EIKDPQCILKGHKKKISIIDWNPMNYY 139 (568)
T ss_pred -----------------------------------------------------ccccceEEeecCCCcEEEEEECCCCCe
Confidence 001233456789999999999999856
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC
Q 046899 209 EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS 288 (407)
Q Consensus 209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~ 288 (407)
+|++++.|++|++||+++++ ....+ .|...|.+++|+| ++.+|++++.|+.|++||+++ ++.+.++.+|.
T Consensus 140 iLaSgS~DgtIrIWDl~tg~--~~~~i-~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~ 209 (568)
T PTZ00420 140 IMCSSGFDSFVNIWDIENEK--RAFQI-NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHD 209 (568)
T ss_pred EEEEEeCCCeEEEEECCCCc--EEEEE-ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC------CcEEEEEeccc
Confidence 67899999999999999887 34444 3667899999999 999999999999999999999 88899999998
Q ss_pred CCEEEE-----EEcCCCCCEEEEeeCC----CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeC
Q 046899 289 AAVLCV-----QWSPDKSSVFGSSAED----GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI 359 (407)
Q Consensus 289 ~~v~~v-----~~~~~~~~ll~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~ 359 (407)
+.+.+. .|++++.+|+ |++.| ++|+|||++..........++.....+.. +....
T Consensus 210 g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p---------------~~D~~ 273 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP---------------HYDES 273 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE---------------eeeCC
Confidence 765433 3568888775 65555 37999999964433322222221111110 00111
Q ss_pred ccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 360 HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 360 ~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.+..+++|+.|++|++|++.... ...+..+. +..++.+++|.|
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~----~~~l~~~~-s~~p~~g~~f~P 316 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGS----IRKVNEYK-SCSPFRSFGFLP 316 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCc----EEeecccc-cCCCccceEEcc
Confidence 25578899999999999996311 11122222 445566777664
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4.1e-31 Score=221.19 Aligned_cols=223 Identities=20% Similarity=0.317 Sum_probs=201.4
Q ss_pred ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 046899 147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS 226 (407)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 226 (407)
.+..+.+-+..++....+..+++++.|++++|||+.+++...++.+|...|..+++++.. .++++++.|+.|+.||+..
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechh
Confidence 344455555566666667889999999999999999999999999999999999999999 6899999999999999998
Q ss_pred CCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899 227 GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 227 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s 306 (407)
.+ .++.+.+|-+.|.|++.+| .-..|++|+.|..+++||+|+ ...+..+.+|..+|.++.+.|-.+.+ +|
T Consensus 225 nk--vIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRt------r~~V~~l~GH~~~V~~V~~~~~dpqv-it 294 (460)
T KOG0285|consen 225 NK--VIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRT------RASVHVLSGHTNPVASVMCQPTDPQV-IT 294 (460)
T ss_pred hh--hHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecc------cceEEEecCCCCcceeEEeecCCCce-EE
Confidence 88 7889999999999999999 789999999999999999999 89999999999999999999988887 49
Q ss_pred eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCCh
Q 046899 307 SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPE 386 (407)
Q Consensus 307 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~ 386 (407)
||.|++|++||++.++...++..|...|.+++..|+ ...+++++.| .|+-|++. .
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~------------------e~~fASas~d-nik~w~~p------~ 349 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK------------------ENLFASASPD-NIKQWKLP------E 349 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCc------------------hhhhhccCCc-cceeccCC------c
Confidence 999999999999999999999999998888888776 5566777777 89999999 8
Q ss_pred HHHHHHHhhcccceeEeec
Q 046899 387 EEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 387 ~~~~~~~~~h~~~v~~~~~ 405 (407)
++.++.+.||.+.|++++-
T Consensus 350 g~f~~nlsgh~~iintl~~ 368 (460)
T KOG0285|consen 350 GEFLQNLSGHNAIINTLSV 368 (460)
T ss_pred cchhhccccccceeeeeee
Confidence 9999999999999998864
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=8.9e-31 Score=219.72 Aligned_cols=294 Identities=14% Similarity=0.167 Sum_probs=242.1
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEec
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSI 141 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~ 141 (407)
......|++.|.+++.+| +.+++|||+.|-.-.+|++.+++....+.+|...+.+. +|.+++|+.
T Consensus 57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 344457999999999999 89999999999999999999999888888888776544 899999999
Q ss_pred cccccccc--cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcE
Q 046899 142 QDHVSALA--AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCL 219 (407)
Q Consensus 142 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i 219 (407)
.++..... .....+..+...+....+++|+.||.+-.|.+++....+.+.+|+.++++=.|.|+| +.++++..||+|
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti 214 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTI 214 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceE
Confidence 98754333 345555556666666779999999999999999988889999999999999999999 789999999999
Q ss_pred EEEEcCCCCCCceeee-cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--------CCCCC
Q 046899 220 ILWDARSGSTPAVKVE-KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--------GHSAA 290 (407)
Q Consensus 220 ~iwd~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~h~~~ 290 (407)
++||+.++++ +..+ ..-..+..++.++. .+..+..|+.++.+++-+..+ ++.+.... .+...
T Consensus 215 ~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~s------gKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 215 IVWNPKTGQP--LHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGS------GKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred EEEecCCCce--eEEecccccCcCCcccccc-ccceeEeccCCccEEEEcccc------ceEEEecCCCCccccccchhh
Confidence 9999999983 3332 23355678888888 888999999999999988877 66666655 35555
Q ss_pred EEEEEEcC---CCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899 291 VLCVQWSP---DKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL 367 (407)
Q Consensus 291 v~~v~~~~---~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~ 367 (407)
+.+|.+.| .-+ |+|+|+-||+|.|||+... .++..-.|..+|+.+.| + + ..+|+++
T Consensus 286 ~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~-~~R~~c~he~~V~~l~w---~---------------~-t~~l~t~ 344 (399)
T KOG0296|consen 286 DESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS-TLRHICEHEDGVTKLKW---L---------------N-TDYLLTA 344 (399)
T ss_pred hhhhhhcccccccc-hhhcccccceEEEEecccc-hhheeccCCCceEEEEE---c---------------C-cchheee
Confidence 55665554 445 6799999999999999984 45555667777777666 2 2 5789999
Q ss_pred EEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 368 TMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 368 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+.+|.|+.||.+ +|+++..+.||...|++++.++
T Consensus 345 c~~g~v~~wDaR------tG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 345 CANGKVRQWDAR------TGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred ccCceEEeeecc------ccceEEEEecCchheeEEEEcC
Confidence 999999999999 9999999999999999998875
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.9e-29 Score=248.79 Aligned_cols=293 Identities=16% Similarity=0.167 Sum_probs=216.7
Q ss_pred CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
.-+..++.|.|+ +++++.|+.+++|-........... ........+...|.+++|+|..+.+||+++.||+|++||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI-HYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc-ccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 445667788874 7899999999999322100010110 112223345678999999987788999999999999999
Q ss_pred CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC-CCCccccccCCCCCCCCCCCCcCceeeEe
Q 046899 113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG-ANSKNASKSGGNGDKPLESPSIGARGKYL 191 (407)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 191 (407)
+.++.....+.+|... +|.+. ... ....+++++.|+.+++||+.++..+..+.
T Consensus 562 ~~~~~~~~~~~~H~~~---------V~~l~-----------------~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 562 VARSQLVTEMKEHEKR---------VWSID-----------------YSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred CCCCeEEEEecCCCCC---------EEEEE-----------------EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9987766666555432 12111 111 12457889999999999999988888886
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
.+ ..|.++.|++..+.+|++|+.||.|++||+++... ....+.+|...|.++.|. ++.+|++++.|+.|++||++.
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCC
Confidence 54 68999999654348999999999999999987653 245667899999999996 467899999999999999985
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-------------ccCCCcccCCC
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-------------GELKYPIIHPA 338 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-------------~~~~~~v~~~~ 338 (407)
........++.++.+|...+.+++|+|++.+ ||+|+.|+.|++|+.........+ ..+...|.+++
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~-lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGY-IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCE-EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 3211114678899999999999999999985 579999999999998765433221 11223355555
Q ss_pred CcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 339 YSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 339 ~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
|+++ +..+++++.||.|+||++
T Consensus 771 ws~~------------------~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQ------------------SSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCC------------------CCeEEEecCCCcEEEEec
Confidence 5554 889999999999999996
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.4e-30 Score=217.72 Aligned_cols=276 Identities=15% Similarity=0.173 Sum_probs=219.5
Q ss_pred CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC---cccccCcCCCCCCCCCcEEEEecccccc
Q 046899 70 RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN---RHAVLGAADSHPDLDQSVVLWSIQDHVS 146 (407)
Q Consensus 70 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~d~~i~~w~~~~~~~ 146 (407)
..|...-..+..|.++|+-+.|++ +|++|||++.|.+..+|++..... ..++.+|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh--------------------- 268 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH--------------------- 268 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecc---------------------
Confidence 344444445557999999999999 999999999999999999875433 2333333
Q ss_pred ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899 147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR 225 (407)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 225 (407)
..++.++...+.+.++++.+.+..+.+||..++.....+.. +...+.+++|.|+| ..|++|+.|+.+..||+.
T Consensus 269 -----~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 269 -----SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred -----cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCC
Confidence 33444555556667788888889999999999999888763 46789999999999 789999999999999998
Q ss_pred CCCCCceeeecc-cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899 226 SGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF 304 (407)
Q Consensus 226 ~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll 304 (407)
... ....++ ....|.+++..+ ||.++++.+.|..|++|+... ......+. -..+|+++..|.++++.|
T Consensus 343 gn~---~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~------~~dr~lis-e~~~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 343 GNI---LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA------RVDRGLIS-EEQPITSFSISKDGKLAL 411 (519)
T ss_pred cch---hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh------hhhhcccc-ccCceeEEEEcCCCcEEE
Confidence 544 222222 235689999999 999999999999999999987 34443343 457899999999999776
Q ss_pred EEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc-ceeeeEEEeeeEEEeecccccc
Q 046899 305 GSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG-RLLVCLTMVKVLEIWRMIDLIY 383 (407)
Q Consensus 305 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~i~iwd~~~~~~ 383 (407)
+.-.+..|++||++....++.+.+|...- | + +. .++.|+. ..|++||.|+.|+||+..
T Consensus 412 -vnL~~qei~LWDl~e~~lv~kY~Ghkq~~----f---i-------Ir--SCFgg~~~~fiaSGSED~kvyIWhr~---- 470 (519)
T KOG0293|consen 412 -VNLQDQEIHLWDLEENKLVRKYFGHKQGH----F---I-------IR--SCFGGGNDKFIASGSEDSKVYIWHRI---- 470 (519)
T ss_pred -EEcccCeeEEeecchhhHHHHhhcccccc----e---E-------EE--eccCCCCcceEEecCCCceEEEEEcc----
Confidence 66679999999999888899999887641 1 1 11 3344555 689999999999999998
Q ss_pred CChHHHHHHHhhcccceeEeeccC
Q 046899 384 RPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.+.++..+.||...|+||+|+|
T Consensus 471 --sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 471 --SGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred --CCceeEeecCCcceeeEEecCC
Confidence 8999999999999999999987
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=9.5e-30 Score=214.55 Aligned_cols=277 Identities=18% Similarity=0.296 Sum_probs=220.4
Q ss_pred CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 70 RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 70 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
..+..+....+.|.+-|.++... ++.++||++||.+++||.. ++....+.+|...+... .|-..+
T Consensus 92 ~~~aP~pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v-----~~v~~n------ 156 (423)
T KOG0313|consen 92 AITAPKPLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSV-----AWVIKN------ 156 (423)
T ss_pred ecCCCCccccccchhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeee-----EEEecC------
Confidence 34444556666799999999854 5789999999999999987 45666777776653221 221111
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc----eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA----RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR 225 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 225 (407)
.....+++++.|.++++|..+.++. +...++|...|.++...+++ ..|++|+.|..|.+|+..
T Consensus 157 ------------~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 157 ------------SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVE 223 (423)
T ss_pred ------------CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccC
Confidence 1112467788888888887765543 33445999999999999999 899999999999999932
Q ss_pred CC-----------------------CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899 226 SG-----------------------STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 226 ~~-----------------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
+. ...+...+.+|.++|.++.|++ ...+++++.|.+|+.||+.+ +....
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDlet------g~~~~ 295 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLET------GGLKS 295 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeec------cccee
Confidence 11 1124667789999999999986 67899999999999999999 88888
Q ss_pred eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeC
Q 046899 283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI 359 (407)
Q Consensus 283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~ 359 (407)
++.+ ..+++++..+|... ||++|+.|..|++||.+++.- .+++.+|...|.++.++|.
T Consensus 296 ~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~----------------- 356 (423)
T KOG0313|consen 296 TLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT----------------- 356 (423)
T ss_pred eeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----------------
Confidence 8875 56899999999877 668999999999999997633 3678899999999999987
Q ss_pred ccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899 360 HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 360 ~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
+...+++|+.|+++++||++. ...++..+.+|.+.|.+++|+
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS-----~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRS-----TKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CceEEEEEecCCeEEEEEecc-----CCCcceeeccCCceEEEEecc
Confidence 266788999999999999983 455999999999999999996
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=199.31 Aligned_cols=276 Identities=14% Similarity=0.204 Sum_probs=215.0
Q ss_pred CeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeE--EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 38 PSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKF--KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 38 p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
..-++.|.|. +++.+.|+.+|+|-.. . .....+. -.-+|+..|++++|+| .|++||+|+.|.++.||
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~---~---~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTS---S---GDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVIW 88 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecC---C---CCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEEe
Confidence 3446788885 8899999999999322 1 1112222 2226999999999999 88999999999999999
Q ss_pred eCcCC--CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC---CcCc
Q 046899 112 DVEAQ--PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP---SIGA 186 (407)
Q Consensus 112 d~~~~--~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~---~~~~ 186 (407)
.-..+ +++..+.+|... ++..+.......+++.+.|.++-||... ..++
T Consensus 89 ~k~~~efecv~~lEGHEnE--------------------------VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENE--------------------------VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred ecCCCceeEEeeeeccccc--------------------------eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 87654 345555555443 3333334444568888899999888776 3456
Q ss_pred eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC-CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR-SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 187 ~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
...+++|+..|..+.|+|.. .+|++++.|++|++|+-. .....+..++.+|...|.+++|+| .|..|++++.|++++
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVS 220 (312)
T ss_pred EeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceE
Confidence 77889999999999999998 799999999999999887 555557889999999999999999 889999999999999
Q ss_pred EEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC------Cccc-ccccCCCcccCC
Q 046899 266 MFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI------GEKQ-DYGELKYPIIHP 337 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~------~~~~-~~~~~~~~v~~~ 337 (407)
||-... .+. .|+.++..++|. ++ +|||++.|+.|+++.-... +.+. .-..|...|+++
T Consensus 221 Iw~~~~-----------~~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 221 IWRLYT-----------DLSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred eeeecc-----------CcchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 998664 122 377899999998 55 5799999999999976642 1111 223577788999
Q ss_pred CCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 338 AYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 338 ~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.|+|.. .+.|++++.||.|++|.+.
T Consensus 287 ~w~p~~-----------------~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 287 QWNPKV-----------------SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEcCCC-----------------CCceeecCCCceEEEEEec
Confidence 998852 7899999999999999874
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.6e-29 Score=202.64 Aligned_cols=279 Identities=16% Similarity=0.181 Sum_probs=223.6
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
+.+.||+.+++.|.|+. +|++|.+++.|.+..||--..++.+.++.+|... +|-+.
T Consensus 4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa---------vW~~D-------------- 59 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA---------VWCCD-------------- 59 (327)
T ss_pred cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCce---------EEEEE--------------
Confidence 45568999999999998 9999999999999999999889999999888654 45433
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCCCC---
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-----DSCLILWDARSGS--- 228 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~--- 228 (407)
.......+++|+.|.++++||.++++.+..++ -..+|..+.|++.| ++++.+.. .+.|.++|++...
T Consensus 60 ---id~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 60 ---IDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred ---ecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 22334568899999999999999999999886 56789999999999 66555543 4779999998432
Q ss_pred --CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-CceeeecCCCCCEEEEEEcCCCCCEEE
Q 046899 229 --TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG-SPIHKFEGHSAAVLCVQWSPDKSSVFG 305 (407)
Q Consensus 229 --~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~ll~ 305 (407)
..+...+..+.+.++.+-|.| -+.+|++|..||.|..||+++ + +.+...+.|...|++++++++..+. +
T Consensus 135 ~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~------g~~~v~s~~~h~~~Ind~q~s~d~T~F-i 206 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDART------GKELVDSDEEHSSKINDLQFSRDRTYF-I 206 (327)
T ss_pred cccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEccc------CceeeechhhhccccccccccCCcceE-E
Confidence 113556667789999999999 899999999999999999998 5 5556667899999999999999965 6
Q ss_pred EeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE--ee--eEEEeecccc
Q 046899 306 SSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM--VK--VLEIWRMIDL 381 (407)
Q Consensus 306 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~--d~--~i~iwd~~~~ 381 (407)
|++.|.+-++||+++.+.+.++.. ..||.+.+++|. ...+..-.|...+=++... .| --|+|++.
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~--------~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i-- 275 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPL--------LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI-- 275 (327)
T ss_pred ecccCccceeeeccceeeEEEeee-cccccceecccc--------cceEEecCCceeeeeeeecccccchhhhHHHHH--
Confidence 999999999999999888877754 678999999996 2222233333322222211 11 56788887
Q ss_pred ccCChHHHHHHHhhcccceeEeeccC
Q 046899 382 IYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
..|.+..++||.++|++|||+|
T Consensus 276 ----~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 276 ----FEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred ----HHHHhccccccccCcceeEECC
Confidence 8999999999999999999987
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=224.95 Aligned_cols=264 Identities=17% Similarity=0.248 Sum_probs=211.1
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
..+.|.+++|+|..+.-+|+.+. -.+.||+..+......+...... +.- ..|-.+|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~-------v~s----------------~~fR~DG 80 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDV-------VYS----------------VDFRSDG 80 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccc-------eeE----------------EEeecCC
Confidence 45689999999977766776665 48999999887655544322211 111 1122233
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 241 (407)
. .+++|...|.++++|+++...++.+.+|+.+|..+.|+|++...|++|+.|+.+++||+.+.. ....+.+|...
T Consensus 81 ~---LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v~~~l~~htDY 155 (487)
T KOG0310|consen 81 R---LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--VQAELSGHTDY 155 (487)
T ss_pred e---EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--EEEEecCCcce
Confidence 3 478899999999999888788899999999999999999998899999999999999999887 46688899999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
|.|.+|+|.++.+++||++||.|++||+|.. ...+.++. |..+|..+.+-|.|. ++|+++ .+.|+|||+.++
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----~~~v~eln-hg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G 227 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----TSRVVELN-HGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTG 227 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccC-----CceeEEec-CCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCC
Confidence 9999999988889999999999999999983 26677776 899999999999998 456777 578999999976
Q ss_pred Cccc-ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccce
Q 046899 322 GEKQ-DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHI 400 (407)
Q Consensus 322 ~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 400 (407)
.++. .+..|...||++.+..+ +..+++++.|+.|+|||+. +.+.+..+. ..++|
T Consensus 228 ~qll~~~~~H~KtVTcL~l~s~------------------~~rLlS~sLD~~VKVfd~t------~~Kvv~s~~-~~~pv 282 (487)
T KOG0310|consen 228 GQLLTSMFNHNKTVTCLRLASD------------------STRLLSGSLDRHVKVFDTT------NYKVVHSWK-YPGPV 282 (487)
T ss_pred ceehhhhhcccceEEEEEeecC------------------CceEeecccccceEEEEcc------ceEEEEeee-cccce
Confidence 6654 44559999999988776 7899999999999999986 444444443 56678
Q ss_pred eEeeccC
Q 046899 401 FGCDKSC 407 (407)
Q Consensus 401 ~~~~~s~ 407 (407)
.+++.|+
T Consensus 283 Lsiavs~ 289 (487)
T KOG0310|consen 283 LSIAVSP 289 (487)
T ss_pred eeEEecC
Confidence 8777664
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.2e-29 Score=230.31 Aligned_cols=268 Identities=16% Similarity=0.247 Sum_probs=188.7
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccc--ccccccCCCCCccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDH--VSALAAEPGSAKST 158 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~ 158 (407)
+|.+.|+++.|++ +|+|||+||.|+.|+||.+...+....-.+....+ ...+... ..........
T Consensus 265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~--------~~~~~~~s~~~p~~s~~~~---- 331 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCM--------YFEYNANSQIEPSTSSEEK---- 331 (712)
T ss_pred ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchh--------hhhhhhccccCcccccccc----
Confidence 6999999999999 99999999999999999998744321111100000 0000000 0000000000
Q ss_pred ccCCCCCccccccCCCCCCCCCC----CCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 159 ASGGANSKNASKSGGNGDKPLES----PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
..+.. ...-.+..... .+.+. -..+++..+.+|.+.|..|.|+.++ +|++++.|.+|+||++.... ++..
T Consensus 332 ~~~~~-s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~ 405 (712)
T KOG0283|consen 332 ISSRT-SSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKV 405 (712)
T ss_pred ccccc-cccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeE
Confidence 00000 00000001111 11111 1235778899999999999999876 89999999999999999777 6766
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
+ .|...|+||+|+|.|.++|++|+-||.||||++.. ..+..+..-..-|++++|.|+|++. +.|+.+|.++
T Consensus 406 F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~a-vIGt~~G~C~ 476 (712)
T KOG0283|consen 406 F-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKGA-VIGTFNGYCR 476 (712)
T ss_pred E-ecCCeeEEEEecccCCCcEeecccccceEEeecCc-------CeeEeehhhhhhheeEEeccCCceE-EEEEeccEEE
Confidence 5 79999999999999999999999999999999986 4444444445889999999999987 4999999999
Q ss_pred EEeCCCCCcccccccC--------CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCCh
Q 046899 315 IWDHEKIGEKQDYGEL--------KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPE 386 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~--------~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~ 386 (407)
+|++...+..+.+..+ ...|+++.|.| +..+.|+..+.|+.|||+|.. +
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p-----------------~~~~~vLVTSnDSrIRI~d~~------~ 533 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP-----------------GDPDEVLVTSNDSRIRIYDGR------D 533 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecC-----------------CCCCeEEEecCCCceEEEecc------c
Confidence 9999987766654422 12466655543 335679999999999999998 7
Q ss_pred HHHHHHHhhcccc
Q 046899 387 EEVLAELDKFKSH 399 (407)
Q Consensus 387 ~~~~~~~~~h~~~ 399 (407)
.+++..|+|+.+.
T Consensus 534 ~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 534 KDLVHKFKGFRNT 546 (712)
T ss_pred hhhhhhhcccccC
Confidence 8999999987654
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3.3e-29 Score=234.00 Aligned_cols=254 Identities=17% Similarity=0.306 Sum_probs=218.9
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
|...+.+..|. ...+++++.|++|++||...+..... +.+|... +|-+. .
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~---------V~~l~-----------------~ 257 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG---------VWGLA-----------------F 257 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCC---------ceeEE-----------------E
Confidence 56778888876 35799999999999999998887766 7777665 23222 1
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
..-...+++|+.|.++++||..++++...+.+|...|.++...+ .++++|+.|.+|++|++.++. .+..+.+|.+
T Consensus 258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~--~l~l~~~h~~ 332 (537)
T KOG0274|consen 258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGA--CLNLLRGHTG 332 (537)
T ss_pred ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcc--eEEEeccccc
Confidence 11234578899999999999999999999999999999999875 578899999999999999988 7888888999
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+|+++..+ +.++++|+.||+|++||+++ ++++.++.+|...|.++.+.+. .++ .+|+.|++|++||+++
T Consensus 333 ~V~~v~~~---~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~sl~~~~~-~~~-~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 333 PVNCVQLD---EPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVYSLIVDSE-NRL-LSGSLDTTIKVWDLRT 401 (537)
T ss_pred cEEEEEec---CCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEEEEEecCc-ceE-EeeeeccceEeecCCc
Confidence 99999995 68999999999999999998 9999999999999999998775 445 5999999999999999
Q ss_pred C-CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhh-ccc
Q 046899 321 I-GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK-FKS 398 (407)
Q Consensus 321 ~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-h~~ 398 (407)
. +++.++.+|..-+..+.+. ...+++++.|++|++||.. +++++..+.+ |..
T Consensus 402 ~~~c~~tl~~h~~~v~~l~~~--------------------~~~Lvs~~aD~~Ik~WD~~------~~~~~~~~~~~~~~ 455 (537)
T KOG0274|consen 402 KRKCIHTLQGHTSLVSSLLLR--------------------DNFLVSSSADGTIKLWDAE------EGECLRTLEGRHVG 455 (537)
T ss_pred hhhhhhhhcCCcccccccccc--------------------cceeEeccccccEEEeecc------cCceeeeeccCCcc
Confidence 9 8999999998877665541 6679999999999999999 8999999999 789
Q ss_pred ceeEeecc
Q 046899 399 HIFGCDKS 406 (407)
Q Consensus 399 ~v~~~~~s 406 (407)
.|.++++.
T Consensus 456 ~v~~l~~~ 463 (537)
T KOG0274|consen 456 GVSALALG 463 (537)
T ss_pred cEEEeecC
Confidence 99988874
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-29 Score=231.82 Aligned_cols=252 Identities=17% Similarity=0.224 Sum_probs=204.4
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD 127 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~ 127 (407)
+.++-.++.+++| +|.... ..-+..+|.|+|+.+.|+| .+.++++|++|-.|+||+..+.+++.++.+|.+
T Consensus 24 ILtslHsG~IQlW---DYRM~t-----li~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlD 94 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLW---DYRMGT-----LIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD 94 (1202)
T ss_pred EEEeecCceeeee---hhhhhh-----HHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccc
Confidence 6677778889999 454332 1234447999999999999 778999999999999999999999999999866
Q ss_pred CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC
Q 046899 128 SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA 207 (407)
Q Consensus 128 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~ 207 (407)
.+ +.- .+ ..--..+++++.|.+|+||+.++++++..+.+|...|.|.+|+|..
T Consensus 95 YV-------Rt~---------~F----------HheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE- 147 (1202)
T KOG0292|consen 95 YV-------RTV---------FF----------HHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE- 147 (1202)
T ss_pred ee-------EEe---------ec----------cCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-
Confidence 52 211 11 1122458889999999999999999999999999999999999987
Q ss_pred cEEEEEeCCCcEEEEEcCCCCC---------------------------CceeeecccCcceEEEEecCCCCCEEEEEeC
Q 046899 208 QEFCSVGDDSCLILWDARSGST---------------------------PAVKVEKAHNADIHCVDWNPHDVNLILTGSA 260 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~ 260 (407)
.+++|+|.|.+|++||+.-.++ .....+.+|...|+-++|+| .-.++++|++
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~D 226 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGAD 226 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCC
Confidence 7999999999999999863210 01234678999999999999 8889999999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCc
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYS 340 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 340 (407)
|..|++|.+...+ .-.+.+.++|...|.++-|+|....+ .|.|.|++|+|||+.+.+.++++......-+.++-.
T Consensus 227 DRqVKlWrmnetK----aWEvDtcrgH~nnVssvlfhp~q~lI-lSnsEDksirVwDm~kRt~v~tfrrendRFW~laah 301 (1202)
T KOG0292|consen 227 DRQVKLWRMNETK----AWEVDTCRGHYNNVSSVLFHPHQDLI-LSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAH 301 (1202)
T ss_pred cceeeEEEecccc----ceeehhhhcccCCcceEEecCcccee-EecCCCccEEEEecccccceeeeeccCCeEEEEEec
Confidence 9999999998744 34567788999999999999998855 599999999999999999998886544443334433
Q ss_pred C
Q 046899 341 S 341 (407)
Q Consensus 341 ~ 341 (407)
|
T Consensus 302 P 302 (1202)
T KOG0292|consen 302 P 302 (1202)
T ss_pred C
Confidence 3
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-29 Score=232.87 Aligned_cols=257 Identities=18% Similarity=0.247 Sum_probs=213.7
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
....|-.++|+| ..-+++++-..|.|++||.+-+.++..+..|..++ += +.|.+.
T Consensus 8 kSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpV-------Rg----------------v~FH~~- 62 (1202)
T KOG0292|consen 8 KSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPV-------RG----------------VDFHPT- 62 (1202)
T ss_pred ccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCcc-------ce----------------eeecCC-
Confidence 456889999999 66689999999999999999998888888885543 21 122222
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 241 (407)
...+++|+.|..|++|+..+.+++.++.+|-+.|..+.|++.- ..++|+|.|.+|+||+..+++ ++..+.+|.-.
T Consensus 63 --qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~--~iavltGHnHY 137 (1202)
T KOG0292|consen 63 --QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRK--CIAVLTGHNHY 137 (1202)
T ss_pred --CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCc--eEEEEecCceE
Confidence 3458889999999999999999999999999999999999998 589999999999999999999 89999999999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC-----------------------CCceeeecCCCCCEEEEEEcC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV-----------------------GSPIHKFEGHSAAVLCVQWSP 298 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-----------------------~~~~~~~~~h~~~v~~v~~~~ 298 (407)
|.|..|+| ...++++++.|.+|||||+........ .-..+.+.+|...|+-++|+|
T Consensus 138 VMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 138 VMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 99999999 889999999999999999864332000 112246678999999999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCCCcc--cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899 299 DKSSVFGSSAEDGILNIWDHEKIGEK--QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW 376 (407)
Q Consensus 299 ~~~~ll~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw 376 (407)
.-+ ||+||++|..|++|.++..+.- .+..+|.++|+++-|.|. .+.|++.+.|++||||
T Consensus 217 Tlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~------------------q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 217 TLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH------------------QDLILSNSEDKSIRVW 277 (1202)
T ss_pred Ccc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc------------------cceeEecCCCccEEEE
Confidence 999 6689999999999998865543 456688888888777554 7889999999999999
Q ss_pred eccccccCChHHHHHHHh
Q 046899 377 RMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 377 d~~~~~~~~~~~~~~~~~ 394 (407)
|+. ....++.++
T Consensus 278 Dm~------kRt~v~tfr 289 (1202)
T KOG0292|consen 278 DMT------KRTSVQTFR 289 (1202)
T ss_pred ecc------cccceeeee
Confidence 998 555666654
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4e-29 Score=199.77 Aligned_cols=268 Identities=15% Similarity=0.224 Sum_probs=227.3
Q ss_pred eEEEeeCCCceEEEEEeC--CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899 76 KFKTIIHPGEVNRIRELP--QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG 153 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~--~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~ 153 (407)
++...+|..+|..++|+| ++|.+|++++.||.=.+-+-+++.-+.++.+|... +|...
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga---------vw~~~----------- 66 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA---------VWSAT----------- 66 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc---------eeeee-----------
Confidence 345568999999999997 58899999999999999999999888888888664 56432
Q ss_pred CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899 154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK 233 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 233 (407)
........++++.|-+.++||.-++..+..+. |...|.+++|+.+. ++|++|+.+..+++||++..+.| ..
T Consensus 67 ------l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~Ap-p~ 137 (334)
T KOG0278|consen 67 ------LNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAP-PK 137 (334)
T ss_pred ------cCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCC-ch
Confidence 11222335667788899999999999999884 88999999999998 88999999999999999988764 56
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
.+.+|.+.|..+.|.. ..+.|++..+|+.||+||.++ +..+.++. ...+|+++..+++|+ ++ +-...+.|
T Consensus 138 E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rT------gt~v~sL~-~~s~VtSlEvs~dG~-il-Tia~gssV 207 (334)
T KOG0278|consen 138 EISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRT------GTEVQSLE-FNSPVTSLEVSQDGR-IL-TIAYGSSV 207 (334)
T ss_pred hhcCCCCcceeEEEec-cCceEEeeccCCceEEEEecc------CcEEEEEe-cCCCCcceeeccCCC-EE-EEecCcee
Confidence 7789999999999998 778888889999999999999 89999987 467899999999999 43 66778899
Q ss_pred EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899 314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL 393 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 393 (407)
.+||..+.+.+..+.. ...|.+.+.+|+ ...+++|..|..++.||.. +++.+..+
T Consensus 208 ~Fwdaksf~~lKs~k~-P~nV~SASL~P~------------------k~~fVaGged~~~~kfDy~------TgeEi~~~ 262 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM-PCNVESASLHPK------------------KEFFVAGGEDFKVYKFDYN------TGEEIGSY 262 (334)
T ss_pred EEeccccccceeeccC-ccccccccccCC------------------CceEEecCcceEEEEEecc------CCceeeec
Confidence 9999999988877653 334666666666 6788999999999999999 88888886
Q ss_pred -hhcccceeEeeccC
Q 046899 394 -DKFKSHIFGCDKSC 407 (407)
Q Consensus 394 -~~h~~~v~~~~~s~ 407 (407)
.||.++|.||.|||
T Consensus 263 nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSP 277 (334)
T ss_pred ccCCCCceEEEEECC
Confidence 99999999999997
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.5e-29 Score=196.22 Aligned_cols=215 Identities=19% Similarity=0.297 Sum_probs=191.1
Q ss_pred CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899 154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK 233 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 233 (407)
.+.....+....+.++.++|.++++|+...+.+++++.+|..+|..++.+.+. ..|++|+.|..+.+||+.+++ ..+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk--v~R 95 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK--VDR 95 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCe--eee
Confidence 33444455556778999999999999999999999999999999999999888 789999999999999999999 789
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
.+.+|.+.|+.+.|+. +...+++|+.|.++++||.|... .+|++.+......|.++..... .+++|+.||++
T Consensus 96 r~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtv 167 (307)
T KOG0316|consen 96 RFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTV 167 (307)
T ss_pred ecccccceeeEEEecC-cceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEeccc---EEEeeccCCcE
Confidence 9999999999999999 88999999999999999999866 7899999988899999998643 35699999999
Q ss_pred EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899 314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL 393 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 393 (407)
|.||++.++....+ ...||+++.||+| ++-.+++++|++||+-|-. +|++++++
T Consensus 168 RtydiR~G~l~sDy--~g~pit~vs~s~d------------------~nc~La~~l~stlrLlDk~------tGklL~sY 221 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDY--FGHPITSVSFSKD------------------GNCSLASSLDSTLRLLDKE------TGKLLKSY 221 (307)
T ss_pred EEEEeecceeehhh--cCCcceeEEecCC------------------CCEEEEeeccceeeecccc------hhHHHHHh
Confidence 99999998765544 4678999999999 8889999999999999998 99999999
Q ss_pred hhcccceeEeec
Q 046899 394 DKFKSHIFGCDK 405 (407)
Q Consensus 394 ~~h~~~v~~~~~ 405 (407)
.||++.-+.++.
T Consensus 222 kGhkn~eykldc 233 (307)
T KOG0316|consen 222 KGHKNMEYKLDC 233 (307)
T ss_pred cccccceeeeee
Confidence 999987665543
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=4.7e-28 Score=203.43 Aligned_cols=291 Identities=14% Similarity=0.158 Sum_probs=224.7
Q ss_pred ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899 46 PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA 125 (407)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 125 (407)
+..+||+.|...-+|-.. ..+ ....+.+|++.|+++.|+. ++.+||||+.+|.|+||+..++.....+...
T Consensus 77 ~l~aTGGgDD~AflW~~~------~ge--~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e 147 (399)
T KOG0296|consen 77 NLVATGGGDDLAFLWDIS------TGE--FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQE 147 (399)
T ss_pred ceEEecCCCceEEEEEcc------CCc--ceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecc
Confidence 347899999999999221 222 4556669999999999998 9999999999999999999998766555311
Q ss_pred CC------CCC--------CCCCcEEEEecccc--ccccccCCCC---CcccccCCCCCccccccCCCCCCCCCCCCcCc
Q 046899 126 AD------SHP--------DLDQSVVLWSIQDH--VSALAAEPGS---AKSTASGGANSKNASKSGGNGDKPLESPSIGA 186 (407)
Q Consensus 126 ~~------~~~--------~~d~~i~~w~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 186 (407)
.. ..| +.||.+.+|.+.+. .+.+..+... ..+++.| ..++++..||++++|+..++++
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG---Kr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG---KRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC---ceEEEEecCceEEEEecCCCce
Confidence 10 111 11999999999884 2233333332 3455554 4588999999999999999999
Q ss_pred eeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--------ccCcceEEE---EecCCCCCE
Q 046899 187 RGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--------AHNADIHCV---DWNPHDVNL 254 (407)
Q Consensus 187 ~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~v~~l---~~~~~~~~~ 254 (407)
+..+.+ ......++.++..+ ..++.|+.++.+++-+..+++ .+.... .+...+.|+ .|+. .-.+
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgK--Vv~~~n~~~~~l~~~~e~~~esve~~~~ss-~lpL 300 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGK--VVNCNNGTVPELKPSQEELDESVESIPSSS-KLPL 300 (399)
T ss_pred eEEecccccCcCCcccccccc-ceeEeccCCccEEEEccccce--EEEecCCCCccccccchhhhhhhhhccccc-ccch
Confidence 888763 23467788888888 789999999999888877765 222221 333344444 4444 5568
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcc
Q 046899 255 ILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI 334 (407)
Q Consensus 255 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 334 (407)
+|+|+-||+|.|||+.. .++ +..-.|..+|..+.|-+ ..+|+ +++.||.|+.||.++++.+.++.+|..+|
T Consensus 301 ~A~G~vdG~i~iyD~a~------~~~-R~~c~he~~V~~l~w~~-t~~l~-t~c~~g~v~~wDaRtG~l~~~y~GH~~~I 371 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAA------STL-RHICEHEDGVTKLKWLN-TDYLL-TACANGKVRQWDARTGQLKFTYTGHQMGI 371 (399)
T ss_pred hhcccccceEEEEeccc------chh-heeccCCCceEEEEEcC-cchhe-eeccCceEEeeeccccceEEEEecCchhe
Confidence 89999999999999998 444 44445899999999998 67775 88899999999999999999999999999
Q ss_pred cCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 335 IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 335 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+++.+|+ .+.|+++|.|++.+|+++.
T Consensus 372 l~f~ls~~------------------~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 372 LDFALSPQ------------------KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEcCC------------------CcEEEEecCCCeEEEEecC
Confidence 99888887 8999999999999999874
No 66
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-28 Score=202.26 Aligned_cols=284 Identities=18% Similarity=0.268 Sum_probs=206.5
Q ss_pred eecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccc--
Q 046899 45 GPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAV-- 122 (407)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-- 122 (407)
-|.+.+++.|.+.+||-. +.. .-..+..||.+.|++|+|++ .+.+++|++.|++-.||...-.-.....
T Consensus 160 qpi~gtASADhTA~iWs~-----Esg---~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a 230 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSL-----ESG---ACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNA 230 (481)
T ss_pred CcceeecccccceeEEee-----ccc---cceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCC
Confidence 467889999999999921 111 11334558999999999999 8899999999999999984322111110
Q ss_pred -cCcCCC--CCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEE
Q 046899 123 -LGAADS--HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199 (407)
Q Consensus 123 -~~~~~~--~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~ 199 (407)
.+|... ..+.|..... .. +. ..+...+| ..++..+.+|...|.+
T Consensus 231 ~~~hSsEeE~e~sDe~~~d--~d------------------~~------~~sD~~ti-------RvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 231 PSDHSSEEEEEHSDEHNRD--TD------------------SS------EKSDGHTI-------RVPLMRLTGHRAVVSA 277 (481)
T ss_pred CCCCCchhhhhcccccccc--cc------------------cc------cccCCcee-------eeeeeeeeccccceEe
Confidence 011100 0000000000 00 00 00000111 2367788899999999
Q ss_pred EEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 046899 200 VQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGS 279 (407)
Q Consensus 200 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~ 279 (407)
..|...| ..+++++.|.+..+||++++. .+..+.+|....+.++-+| ..+++++.+.|.+.++||.+.. -.
T Consensus 278 ~dWL~gg-~Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-----I~ 348 (481)
T KOG0300|consen 278 CDWLAGG-QQMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-----IQ 348 (481)
T ss_pred hhhhcCc-ceeeeeeccccceeeeeccCc--eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----cc
Confidence 9999888 889999999999999999999 7889999999999999999 8999999999999999999953 46
Q ss_pred ceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeC
Q 046899 280 PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI 359 (407)
Q Consensus 280 ~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~ 359 (407)
.+..|++|...|+++.|..+.+ + ++|+.|.+|++||+++++....--..+.++..++.|.-
T Consensus 349 sV~VFQGHtdtVTS~vF~~dd~-v-VSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g----------------- 409 (481)
T KOG0300|consen 349 SVAVFQGHTDTVTSVVFNTDDR-V-VSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKG----------------- 409 (481)
T ss_pred eeeeecccccceeEEEEecCCc-e-eecCCCceEEEeeeccccCcceeeecCCccceeEeecC-----------------
Confidence 7889999999999999998877 5 69999999999999988766544445666666555321
Q ss_pred ccceeeeEEEeeeEEEeeccccccCChHHHHHHH-----hhcccceeEeecc
Q 046899 360 HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL-----DKFKSHIFGCDKS 406 (407)
Q Consensus 360 ~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s 406 (407)
...|+.--....||+||++ |..+..+ +||...|+|+||+
T Consensus 410 -~~iIAiPhDNRqvRlfDln-------G~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 410 -HPIIAIPHDNRQVRLFDLN-------GNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred -CceEEeccCCceEEEEecC-------CCccccCCcccccccceeeeeeecc
Confidence 2233333344499999997 5555544 4999999999996
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=8.6e-30 Score=216.98 Aligned_cols=274 Identities=19% Similarity=0.234 Sum_probs=219.0
Q ss_pred ccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccc
Q 046899 68 EARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHV 145 (407)
Q Consensus 68 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~ 145 (407)
+...|......+-.|.++|+.+.|.+ +...|+||+.|..|++|++...+ ...++.+..
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~------------------- 219 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL------------------- 219 (459)
T ss_pred hcccchhhhhhhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccC-------------------
Confidence 33556666667778999999999999 77789999999999999998765 223332221
Q ss_pred cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899 146 SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR 225 (407)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 225 (407)
+.+..+.........++.+.|+.+++|+....+...++.+|++.|+++.|.... ..+++|+.|.+|++||+.
T Consensus 220 -------g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 220 -------GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred -------CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhh
Confidence 112222233334567889999999999999999999999999999999998876 559999999999999999
Q ss_pred CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE
Q 046899 226 SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305 (407)
Q Consensus 226 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~ 305 (407)
... +.++.. -.+.+..|..+ ...+++|..|+.|++||.+. ..+..+...+. .|+++..++++..|+
T Consensus 292 k~~--C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs------~~~~~sv~~gg-~vtSl~ls~~g~~lL- 357 (459)
T KOG0288|consen 292 KAY--CSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS------ADKTRSVPLGG-RVTSLDLSMDGLELL- 357 (459)
T ss_pred hhh--eecccc-ccccccceEec---ceeeeecccccceEEEeccC------CceeeEeecCc-ceeeEeeccCCeEEe-
Confidence 876 555432 34455666665 36789999999999999999 78888888765 899999999999887
Q ss_pred EeeCCCeEEEEeCCCCCcccccccC----CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899 306 SSAEDGILNIWDHEKIGEKQDYGEL----KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL 381 (407)
Q Consensus 306 s~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~ 381 (407)
+++.|.++.+.|+++.+..+.+... ....+.+.|||+ +.++++||.||.|+||++.
T Consensus 358 sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd------------------~~YvaAGS~dgsv~iW~v~-- 417 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD------------------GSYVAAGSADGSVYIWSVF-- 417 (459)
T ss_pred eecCCCceeeeecccccEEEEeeccccccccccceeEECCC------------------CceeeeccCCCcEEEEEcc--
Confidence 7799999999999998777776543 233677888888 9999999999999999999
Q ss_pred ccCChHHHHHHHhhcc-c-ceeEeeccC
Q 046899 382 IYRPEEEVLAELDKFK-S-HIFGCDKSC 407 (407)
Q Consensus 382 ~~~~~~~~~~~~~~h~-~-~v~~~~~s~ 407 (407)
++++...+.... + .|++++|++
T Consensus 418 ----tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 418 ----TGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred ----CceEEEEeccCCCCcceEEEEEcC
Confidence 788877777543 3 699999985
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7e-28 Score=217.21 Aligned_cols=241 Identities=21% Similarity=0.371 Sum_probs=207.3
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC-cCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG-AADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
.+.|+++.|++ +|.+||+|..+|.|.|||..+.+....+.+ |...+. ..-|+
T Consensus 217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg-----~laW~--------------------- 269 (484)
T KOG0305|consen 217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG-----SLAWN--------------------- 269 (484)
T ss_pred CCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeE-----EEecc---------------------
Confidence 89999999999 999999999999999999998888877766 433211 12222
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
...+.+|+.++.|..+|+...+.... +.+|...|..++|++++ .+||+|+.|+.+.|||..... ....+..|..
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~--p~~~~~~H~a 344 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPE--PKFTFTEHTA 344 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCcc--ccEEEeccce
Confidence 23466788888999998887776555 88999999999999999 899999999999999996666 5778889999
Q ss_pred ceEEEEecCCCCCEEEEEe--CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEe
Q 046899 241 DIHCVDWNPHDVNLILTGS--ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWD 317 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd 317 (407)
.|.+++|+|....+||+|+ .|+.|++||..+ ++.+..+.. ...|.+|.|++..+-|+++-+ .++.|.||+
T Consensus 345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~------g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~ 417 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNT------GARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWK 417 (484)
T ss_pred eeeEeeeCCCccCceEEcCCCcccEEEEEEcCC------CcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence 9999999998889999975 589999999998 888888874 678999999999876654443 578899999
Q ss_pred CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
..+.+.+..+.+|...|..++.||| +..|++|+.|.++++|++-.
T Consensus 418 ~ps~~~~~~l~gH~~RVl~la~SPd------------------g~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 418 YPSMKLVAELLGHTSRVLYLALSPD------------------GETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccccceeeeecCCcceeEEEEECCC------------------CCEEEEecccCcEEeccccC
Confidence 9999999999999999999999999 89999999999999999974
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.7e-28 Score=193.59 Aligned_cols=267 Identities=16% Similarity=0.300 Sum_probs=218.8
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccc--cCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAV--LGAADSHPDLDQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
....+|...|.+|+|+. +|..|++|+.|+++++|++......... .+|...+ .-..|+...
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~sv-----dql~w~~~~----------- 76 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSV-----DQLCWDPKH----------- 76 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcch-----hhheeCCCC-----------
Confidence 34447999999999998 9999999999999999999877544433 2333221 112343322
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
...+++++.+..+++||...+++........+. .-+.|+|+| .+++.++.|..|.+.|.++.+ ...
T Consensus 77 ---------~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~---~~~ 142 (313)
T KOG1407|consen 77 ---------PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYK---IVN 142 (313)
T ss_pred ---------CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccc---eee
Confidence 235788899999999999999999888654444 467899999 899999999999999999877 333
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
.......++-++|+. ++++|+.-...|.|.|..... .+++.++++|.....||.|+|+|+|+ |+|+.|..+.
T Consensus 143 ~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsyps------Lkpv~si~AH~snCicI~f~p~Gryf-A~GsADAlvS 214 (313)
T KOG1407|consen 143 EEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPS------LKPVQSIKAHPSNCICIEFDPDGRYF-ATGSADALVS 214 (313)
T ss_pred hhcccceeeeeeecC-CCCEEEEecCCceEEEEeccc------cccccccccCCcceEEEEECCCCceE-eeccccceee
Confidence 345667788899985 777777767789999998887 89999999999999999999999985 8999999999
Q ss_pred EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
+||+...-+++.+..++-||..+.||.| +.+|+++|.|-.|-|=++. +|..+..++
T Consensus 215 LWD~~ELiC~R~isRldwpVRTlSFS~d------------------g~~lASaSEDh~IDIA~ve------tGd~~~eI~ 270 (313)
T KOG1407|consen 215 LWDVDELICERCISRLDWPVRTLSFSHD------------------GRMLASASEDHFIDIAEVE------TGDRVWEIP 270 (313)
T ss_pred ccChhHhhhheeeccccCceEEEEeccC------------------cceeeccCccceEEeEecc------cCCeEEEee
Confidence 9999999999999999999999999999 9999999999988777776 677766665
Q ss_pred hcccceeEeeccC
Q 046899 395 KFKSHIFGCDKSC 407 (407)
Q Consensus 395 ~h~~~v~~~~~s~ 407 (407)
|.++.+.|||-|
T Consensus 271 -~~~~t~tVAWHP 282 (313)
T KOG1407|consen 271 -CEGPTFTVAWHP 282 (313)
T ss_pred -ccCCceeEEecC
Confidence 777888888864
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=201.90 Aligned_cols=235 Identities=17% Similarity=0.295 Sum_probs=182.5
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
..-+..|++++.+-+|+| +|.++|||+.|.+|+|.|+...-...... .. ..
T Consensus 105 t~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~---em-------------~~------------ 155 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPK---EM-------------IS------------ 155 (430)
T ss_pred eEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchh---hh-------------cc------------
Confidence 334446999999999999 99999999999999999987431111000 00 00
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCc-CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSI-GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
| +.+.. -.++++-.|.++|+++.|+|.. .+|++|+.|++|++||+..........
T Consensus 156 -----~------------------~~qa~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K 211 (430)
T KOG0640|consen 156 -----G------------------DTQARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFK 211 (430)
T ss_pred -----C------------------CcccCCceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHH
Confidence 0 00111 2467788899999999999998 899999999999999998765211222
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee---cCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
......+|.+++|+| .|.+|+.|..--.+++||+.+ .++...- ..|.+.|+++.+++.++ |.+|++.||
T Consensus 212 ~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T------~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG 283 (430)
T KOG0640|consen 212 VFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNT------YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDG 283 (430)
T ss_pred HhhccceeeeEeecC-CCceEEEecCCCceeEEeccc------eeEeeecCcccccccceeEEEecCCcc-EEEEeccCC
Confidence 223456899999999 999999999999999999998 4544332 35899999999999999 678999999
Q ss_pred eEEEEeCCCCCccccccc-CC-CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH
Q 046899 312 ILNIWDHEKIGEKQDYGE-LK-YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV 389 (407)
Q Consensus 312 ~i~vwd~~~~~~~~~~~~-~~-~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~ 389 (407)
.|++||--+++++.++.. |+ ..|.+..|+.+ +.+|++.+.|+.+++|.+. ++.+
T Consensus 284 ~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn------------------~kyiLsSG~DS~vkLWEi~------t~R~ 339 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN------------------GKYILSSGKDSTVKLWEIS------TGRM 339 (430)
T ss_pred cEEeeccccHHHHHHHHhhcCCceeeeEEEccC------------------CeEEeecCCcceeeeeeec------CCce
Confidence 999999999999988874 43 34666777666 8899999999999999998 5666
Q ss_pred HHHHhh
Q 046899 390 LAELDK 395 (407)
Q Consensus 390 ~~~~~~ 395 (407)
+..+.|
T Consensus 340 l~~YtG 345 (430)
T KOG0640|consen 340 LKEYTG 345 (430)
T ss_pred EEEEec
Confidence 655543
No 71
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=223.67 Aligned_cols=275 Identities=13% Similarity=0.169 Sum_probs=206.7
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
-+...++|...+ +-..|+.++. ..++|+.+......... .+.. ........+...+... .
T Consensus 38 ~k~~~nAIs~nr-~~~qiv~AGr-s~lklyai~~~~~~~~~--------------~~~~--k~kqn~~~S~~DVkW~--~ 97 (839)
T KOG0269|consen 38 LKAKANAISVNR-DINQIVVAGR-SLLKLYAINPNDFSEKC--------------NHRF--KTKQNKFYSAADVKWG--Q 97 (839)
T ss_pred cccccceEeecC-CcceeEEecc-cceeeEeeCcccCCcce--------------eeec--ccccceeeehhhcccc--c
Confidence 355677777777 5556666665 47888888755322111 1110 0001111111111111 2
Q ss_pred CCCCccccccCCCCCCCCCCCC---cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 162 GANSKNASKSGGNGDKPLESPS---IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
-....+++++..|.|.+||+.. .+.+..+..|+..++++.|++..+++|++|+.||.|++||+|... ...++.+.
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~n 175 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSN 175 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--cccccccc
Confidence 2235678899999999999987 566678889999999999999999999999999999999999887 56677788
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
...|..+.|+|..++.|+++.+.|.+++||+|.+ .++...+.+|.++|.|+.|+|++.+| ||||.|+.|+|||.
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~~AH~GpV~c~nwhPnr~~l-ATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP-----DRCEKKLTAHNGPVLCLNWHPNREWL-ATGGRDKMVKIWDM 249 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCc-----hhHHHHhhcccCceEEEeecCCCcee-eecCCCccEEEEec
Confidence 8899999999988999999999999999999987 47888999999999999999988864 89999999999999
Q ss_pred CCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE--EeeeEEEeeccccccCChHHHHHHHhh
Q 046899 319 EKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT--MVKVLEIWRMIDLIYRPEEEVLAELDK 395 (407)
Q Consensus 319 ~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~ 395 (407)
...+.-.... ....||..+.|-|+. ...|++.+ .|..|+|||+.. .--+...+..
T Consensus 250 t~~~~~~~~tInTiapv~rVkWRP~~-----------------~~hLAtcsmv~dtsV~VWDvrR-----PYIP~~t~~e 307 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAPVGRVKWRPAR-----------------SYHLATCSMVVDTSVHVWDVRR-----PYIPYATFLE 307 (839)
T ss_pred cCCCccceeEEeecceeeeeeeccCc-----------------cchhhhhhccccceEEEEeecc-----ccccceeeec
Confidence 8654433222 346688889998872 34555444 455999999974 3345678889
Q ss_pred cccceeEeecc
Q 046899 396 FKSHIFGCDKS 406 (407)
Q Consensus 396 h~~~v~~~~~s 406 (407)
|...|+.++|-
T Consensus 308 H~~~vt~i~W~ 318 (839)
T KOG0269|consen 308 HTDSVTGIAWD 318 (839)
T ss_pred cCccccceecc
Confidence 99999999883
No 72
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-26 Score=200.38 Aligned_cols=252 Identities=19% Similarity=0.315 Sum_probs=195.5
Q ss_pred EEEee----cccccCccceEEEEeecccCcccC--CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC
Q 046899 42 CRWGP----QLEQATYKNRQRLYLSEQFNEEAR--SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA 115 (407)
Q Consensus 42 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 115 (407)
.+.+| .+++....+.+.||--+....-.. .+.....++.+|+++-.+|+|++...-.|++|+.|++|++||+..
T Consensus 130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccc
Confidence 34555 377788888899994331111110 023345578899999999999998888999999999999999986
Q ss_pred CCCc-------ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC-CCccccccCCCCCCCCCCC--CcC
Q 046899 116 QPNR-------HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESP--SIG 185 (407)
Q Consensus 116 ~~~~-------~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~--~~~ 185 (407)
.... ..+.+|...+. ..+.... ...+++.+.|+.+.|||.. +.+
T Consensus 210 ~~~~~~~~~p~~~~~~h~~~Ve--------------------------DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 210 ESKEDKVVDPKTIFSGHEDVVE--------------------------DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred cccCCccccceEEeecCCccee--------------------------hhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 5432 11122222211 1111111 2356778888899999988 566
Q ss_pred ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
+.....+|.++|+|++|+|.+..+||+|+.|++|++||+|+... ....+.+|...|.+|.|+|.....||+++.|+.+.
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 67778899999999999999889999999999999999999887 47788899999999999998899999999999999
Q ss_pred EEeCCCCCC--------CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 266 MFDRRKLTS--------DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 266 vwd~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+||+..... ++..+++..-.+|...|..+.|+|+.+++++|.+.|+.+.||++..
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999976443 2224566777899999999999999999999999999999999874
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.9e-27 Score=208.12 Aligned_cols=283 Identities=18% Similarity=0.252 Sum_probs=193.2
Q ss_pred CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc-cccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH-AVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
.|...++++.+|+..|.++++.| .|-.|+||+.|-+|++||+....... .+.. ..|+....|. .+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~---l~P~E~h~i~---------sl~ 221 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQ---LQPCETHQIN---------SLQ 221 (641)
T ss_pred CCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhc---cCcccccccc---------eee
Confidence 55666778888999999999999 88899999999999999998653211 1100 0000000010 011
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce------------eeEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR------------GKYLGHEDTVEDVQFCPSSAQEFCSVGDDS 217 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~------------~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg 217 (407)
.......+++.+.....+++|....+.. ...++|...++|.+|+|.....|++++.||
T Consensus 222 ----------ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 222 ----------YSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred ----------ecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 1111123444445555555554433322 233579999999999999888999999999
Q ss_pred cEEEEEcCCCCCCceeeec-----ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC--C
Q 046899 218 CLILWDARSGSTPAVKVEK-----AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA--A 290 (407)
Q Consensus 218 ~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~--~ 290 (407)
++++||+...+.. ...+. +..-+++.++|+| +++.||+|..||+|.+||.+.... ......-.+|.. .
T Consensus 292 tlRiWdv~~~k~q-~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQ-LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLPGQD 366 (641)
T ss_pred cEEEEecCCchhh-eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc---ccceEeeeccCCCCc
Confidence 9999999876531 21211 2234688999999 999999999999999999876431 122334456877 8
Q ss_pred EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc-ccc--CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899 291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD-YGE--LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL 367 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~-~~~--~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~ 367 (407)
|+||.||++|++| +|-+.|+++++||+++.+.... ..+ ...+-+.++|||| ...|++|
T Consensus 367 Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd------------------~kli~TG 427 (641)
T KOG0772|consen 367 ITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD------------------DKLILTG 427 (641)
T ss_pred eeEEEeccccchh-hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCC------------------ceEEEec
Confidence 9999999999987 5999999999999998766543 333 3556788999999 5556655
Q ss_pred EE------eeeEEEeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899 368 TM------VKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 368 ~~------d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
+. .|++.+||-. +-+.+..+.-....|..+.|-
T Consensus 428 tS~~~~~~~g~L~f~d~~------t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRM------TLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred ccccCCCCCceEEEEecc------ceeeEEEecCCCceEEEEeec
Confidence 43 4478888876 555555554445555555553
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-27 Score=200.31 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=217.0
Q ss_pred EEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC
Q 046899 41 SCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP 117 (407)
Q Consensus 41 s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 117 (407)
.++|.+ .+++++.|.+.-+|.. ..+........+.+|..+|.-+.|+| +.++|++++.|..+++||+.++.
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v-----~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIV-----VYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEE-----ecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcch
Confidence 345544 6999999999988833 22233455667779999999999999 77888899999999999999998
Q ss_pred CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-ccC
Q 046899 118 NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-EDT 196 (407)
Q Consensus 118 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~ 196 (407)
....+...... .-+-+.|-.++ ..+++|+.|+.+..||..... ....++. ...
T Consensus 303 ~~~~y~~~~~~----S~~sc~W~pDg---------------------~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~ 356 (519)
T KOG0293|consen 303 LRHLYPSGLGF----SVSSCAWCPDG---------------------FRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPK 356 (519)
T ss_pred hhhhcccCcCC----CcceeEEccCC---------------------ceeEecCCCCcEEEecCCcch-hhcccccccce
Confidence 87766443211 12223443322 236778888888888876433 3444432 357
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~ 276 (407)
|.+++..++| .++++...|..|++++..+.. ... ...-..+|++++.+. +++++++.-.+..+++||++.
T Consensus 357 v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~--dr~-lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e----- 426 (519)
T KOG0293|consen 357 VHDLAITYDG-KYVLLVTVDKKIRLYNREARV--DRG-LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE----- 426 (519)
T ss_pred eEEEEEcCCC-cEEEEEecccceeeechhhhh--hhc-cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecch-----
Confidence 9999999999 677788899999999988765 222 233456899999999 999999999999999999997
Q ss_pred CCCceeeecCCCCC--EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeee
Q 046899 277 VGSPIHKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSI 354 (407)
Q Consensus 277 ~~~~~~~~~~h~~~--v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~ 354 (407)
...++.+.+|... +-.-+|--....++|+||.|+.|+||+..+++.+..+.+|...|.+++++|--
T Consensus 427 -~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~----------- 494 (519)
T KOG0293|consen 427 -NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD----------- 494 (519)
T ss_pred -hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC-----------
Confidence 7899999998764 44445655443467899999999999999999999999999999999999962
Q ss_pred eEeeCccceeeeEEEeeeEEEeeccc
Q 046899 355 GMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 355 ~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
-.++++++.||+||||....
T Consensus 495 ------p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 ------PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ------HHHhhccCCCCeEEEecCCc
Confidence 66889999999999998863
No 75
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=3.4e-26 Score=202.57 Aligned_cols=262 Identities=21% Similarity=0.397 Sum_probs=205.0
Q ss_pred CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
.-|..++.|.|. +++++.++.+++|. +.... .......|...+..+.|+| ++++|++++.||.|++||
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~---~~~~~-----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWD---LETGE-----LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWD 79 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEE---eeCCC-----cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEE
Confidence 456777888773 77788899999992 22111 2334457899999999999 678999999999999999
Q ss_pred CcCCCCcccccCcCCCCCC-------------C-CCcEEEEeccccccc--cccCCCCCcccccCCCCCccccccCCCCC
Q 046899 113 VEAQPNRHAVLGAADSHPD-------------L-DQSVVLWSIQDHVSA--LAAEPGSAKSTASGGANSKNASKSGGNGD 176 (407)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~-------------~-d~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (407)
+.+.+....+..+...+.. . ++.+.+|++.+.... +..+...+..+........++++..++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 9986655554444322111 1 889999999855332 22233333333333334455556669999
Q ss_pred CCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE
Q 046899 177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL 256 (407)
Q Consensus 177 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 256 (407)
.+||...++.+..+..|...+.+++|+|++ ..+++++.|+.|++||++.++ ....+..|...+.+++|+| ++.+++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~~~ 235 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK--CLGTLRGHENGVNSVAFSP-DGYLLA 235 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc--eecchhhcCCceEEEEEcC-CCcEEE
Confidence 999999999999999999999999999998 788888889999999999876 5666668888999999999 788888
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 257 tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
+++.||.|++||++. ++++..+..|...|.+++|+|++.++ ++++.|+.|++|+
T Consensus 236 ~~~~~~~i~i~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDLRT------GECVQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCC------ceeEEEccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence 888899999999998 78888898999999999999998865 6999999999996
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.8e-27 Score=196.00 Aligned_cols=271 Identities=15% Similarity=0.220 Sum_probs=226.9
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC--------CCCCC--------------CCC
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA--------DSHPD--------------LDQ 134 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--------~~~~~--------------~d~ 134 (407)
...++....+.|..|+| ++++|++|+.||.|.|||..+++....+.-.. ..+.+ .||
T Consensus 207 ~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred heecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 34456788899999999 99999999999999999999987665443211 11111 199
Q ss_pred cEEEEeccccccccc---cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEE
Q 046899 135 SVVLWSIQDHVSALA---AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFC 211 (407)
Q Consensus 135 ~i~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 211 (407)
.|++|.+.++.+.-. .+..++....+.+.++.+++++.|.++++--+++++++..+++|...|+...|.++| +.++
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG-~~ii 364 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG-HHII 364 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC-CeEE
Confidence 999999999966433 567788888899999999999999999999999999999999999999999999999 8999
Q ss_pred EEeCCCcEEEEEcCCCCCCceeeec--ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---
Q 046899 212 SVGDDSCLILWDARSGSTPAVKVEK--AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--- 286 (407)
Q Consensus 212 s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--- 286 (407)
+++.||+|++|+..+.+ +..++. +...+|+++-.-|.+...++++....+|++-++. ++.++++..
T Consensus 365 saSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-------GQvVrsfsSGkR 435 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-------GQVVRSFSSGKR 435 (508)
T ss_pred EecCCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-------ceEEeeeccCCc
Confidence 99999999999999988 555544 4456889998888788999999999999999998 588888864
Q ss_pred CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899 287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC 366 (407)
Q Consensus 287 h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~ 366 (407)
..+...+...+|.|.++. +.+.|+.+..+.+.+++...++..|...+.++ .+.+|.+.|++
T Consensus 436 EgGdFi~~~lSpkGewiY-cigED~vlYCF~~~sG~LE~tl~VhEkdvIGl------------------~HHPHqNllAs 496 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIY-CIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL------------------THHPHQNLLAS 496 (508)
T ss_pred cCCceEEEEecCCCcEEE-EEccCcEEEEEEeecCceeeeeeccccccccc------------------ccCcccchhhh
Confidence 234566777999999885 77889999999999999999998888766554 44566999999
Q ss_pred EEEeeeEEEee
Q 046899 367 LTMVKVLEIWR 377 (407)
Q Consensus 367 ~~~d~~i~iwd 377 (407)
-+.||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999995
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.6e-26 Score=217.81 Aligned_cols=305 Identities=19% Similarity=0.267 Sum_probs=231.7
Q ss_pred CeeEEEEeec---ccccC--ccceEEEEeecccCc-----ccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCc
Q 046899 38 PSLSCRWGPQ---LEQAT--YKNRQRLYLSEQFNE-----EARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPD 107 (407)
Q Consensus 38 p~~s~~~~~~---~~~~~--~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~ 107 (407)
+..+++-.|+ ++|++ .|+.++||....+.. +...|.. ......|.+.|+|++|+| +|++||+|++|+.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~-l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH-LCTMDDHDGSVNCVRFSP-DGSYLASGSDDRL 92 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchh-heeeccccCceeEEEECC-CCCeEeeccCcce
Confidence 3667777775 77888 888888996662211 1112333 334446999999999999 9999999999999
Q ss_pred EEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce
Q 046899 108 VLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR 187 (407)
Q Consensus 108 i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 187 (407)
|.||+.... ......+.... ...+.-|.. ...+..|...+..+.-...+..+++++.|+++.+|+..+.+.+
T Consensus 93 v~iW~~~~~-~~~~~fgs~g~----~~~vE~wk~---~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 93 VMIWERAEI-GSGTVFGSTGG----AKNVESWKV---VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred EEEeeeccc-CCccccccccc----ccccceeeE---EEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence 999998851 11111111111 111222221 1233445555555555566778999999999999999999999
Q ss_pred eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc------CcceEEEEecCCCCCEEEEEeC-
Q 046899 188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH------NADIHCVDWNPHDVNLILTGSA- 260 (407)
Q Consensus 188 ~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~tg~~- 260 (407)
..+++|...|..+.|.|-| ++||+-+.|++|++|++.+-. ..+.+.++ ...+..+.|+| ||.+|++...
T Consensus 165 ~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~--i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~ 240 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWG--IEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAV 240 (942)
T ss_pred eeeecccccccceEECCcc-CeeeeecCCceEEEEEcccce--eeEeeccchhhCCCcceeeecccCC-CcCeecchhhc
Confidence 9999999999999999999 899999999999999977644 34444333 23578899999 9999998743
Q ss_pred ---CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC--------C-------CC-EEEEeeCCCeEEEEeCCCC
Q 046899 261 ---DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD--------K-------SS-VFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 261 ---dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--------~-------~~-ll~s~~~d~~i~vwd~~~~ 321 (407)
-.++.|.+..+ ++.-..|-+|.+++.+++|+|. | .| ++|+||.|++|.||.....
T Consensus 241 n~~~~~~~IieR~t------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 241 NGGKSTIAIIERGT------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred cCCcceeEEEecCC------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 34788999887 7888899999999999999971 1 12 7899999999999999887
Q ss_pred Cccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 322 GEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 322 ~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+.+..... ....|..++|||| |-.|+++|.||+|.+..+.+
T Consensus 315 RPl~vi~~lf~~SI~DmsWspd------------------G~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 315 RPLFVIHNLFNKSIVDMSWSPD------------------GFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CchhhhhhhhcCceeeeeEcCC------------------CCeEEEEecCCeEEEEEcch
Confidence 77765543 5778999999999 88899999999999999974
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2.5e-27 Score=189.54 Aligned_cols=280 Identities=17% Similarity=0.234 Sum_probs=220.4
Q ss_pred ecccCCCeeEEEEeec------ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCC
Q 046899 32 NHNLVWPSLSCRWGPQ------LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDS 105 (407)
Q Consensus 32 ~~~~~~p~~s~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d 105 (407)
-+.+.-|.+.+.|.|. +.+++-|+.--+ ...+....+- ...+|.+.|++..... +....|+++.|
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pml------r~g~tgdwig--tfeghkgavw~~~l~~-na~~aasaaad 80 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPML------RNGDTGDWIG--TFEGHKGAVWSATLNK-NATRAASAAAD 80 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchh------ccCCCCCcEE--eeeccCcceeeeecCc-hhhhhhhhccc
Confidence 3566678887777663 445555542211 2222333333 3448999999999776 77889999999
Q ss_pred CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC
Q 046899 106 PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG 185 (407)
Q Consensus 106 g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 185 (407)
-+-+|||.-++..+..+.. ..-+...++......+++|+.+.-++++|++..+
T Consensus 81 ftakvw~a~tgdelhsf~h---------------------------khivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFEH---------------------------KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred chhhhhhhhhhhhhhhhhh---------------------------hheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 9999999998876655432 1111222344445668899999999999998755
Q ss_pred -ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899 186 -ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264 (407)
Q Consensus 186 -~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i 264 (407)
+...+.+|.+.|..+-|.... +.+++++.|++||+||.+++. .+..+ ..+.+|+++..++ ++++|.++ ..+.|
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt--~v~sL-~~~s~VtSlEvs~-dG~ilTia-~gssV 207 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGT--EVQSL-EFNSPVTSLEVSQ-DGRILTIA-YGSSV 207 (334)
T ss_pred CCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCc--EEEEE-ecCCCCcceeecc-CCCEEEEe-cCcee
Confidence 456788999999999999877 678888999999999999998 45554 5677899999999 88877664 46789
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-ccCCCcccCCCCcCcc
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-GELKYPIIHPAYSSDM 343 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~ 343 (407)
.+||..+ ..++..++. ...|.+..++|+.. +|++|+.|..++.||..++..+..+ .+|.+||.++.||||
T Consensus 208 ~Fwdaks------f~~lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd- 278 (334)
T KOG0278|consen 208 KFWDAKS------FGLLKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD- 278 (334)
T ss_pred EEecccc------ccceeeccC-ccccccccccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC-
Confidence 9999999 778887764 45689999999986 6789999999999999999999886 899999999999999
Q ss_pred hhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+...++||.||+||||...
T Consensus 279 -----------------GE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 279 -----------------GELYASGSEDGTIRLWQTT 297 (334)
T ss_pred -----------------CceeeccCCCceEEEEEec
Confidence 8999999999999999886
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.2e-26 Score=189.54 Aligned_cols=284 Identities=15% Similarity=0.217 Sum_probs=215.7
Q ss_pred cCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeec---------ccCc-ccCCcceeeEEEeeCCCceEE
Q 046899 22 LVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSE---------QFNE-EARSPFVKKFKTIIHPGEVNR 88 (407)
Q Consensus 22 ~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~---------~~~~-~~~~~~~~~~~~~~h~~~v~~ 88 (407)
..|.-|+-....++.-|+..-.|.|+ ++||+.|..++|+-.. +... +.......+..+..|.++|++
T Consensus 98 ~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~ 177 (430)
T KOG0640|consen 98 PEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND 177 (430)
T ss_pred CCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence 45566666666777778888888775 8899999999999555 1111 112222344566689999999
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899 89 IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA 168 (407)
Q Consensus 89 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (407)
+.|+| ...+|++|+.|++|+++|+.+....+.+
T Consensus 178 l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~---------------------------------------------- 210 (430)
T KOG0640|consen 178 LDFHP-RETILISGSRDNTVKLFDFSKTSAKRAF---------------------------------------------- 210 (430)
T ss_pred eeecc-hhheEEeccCCCeEEEEecccHHHHHHH----------------------------------------------
Confidence 99999 7889999999999999999864332221
Q ss_pred cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee---eecccCcceEEE
Q 046899 169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK---VEKAHNADIHCV 245 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~v~~l 245 (407)
..+ ....+|.+|.|+|.| .+++.|..-.++++||+++.+ +.. ....|.+.|+++
T Consensus 211 -------------------K~~-qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 211 -------------------KVF-QDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQV 267 (430)
T ss_pred -------------------HHh-hccceeeeEeecCCC-ceEEEecCCCceeEEecccee--EeeecCcccccccceeEE
Confidence 111 234579999999999 789999999999999999987 333 235789999999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
.+++ .+++.+||+.||.|++||--. .+++.++.. |. ..|.+..|..+++|+| +++.|..+++|.+.+++.
T Consensus 268 ~Ys~-t~~lYvTaSkDG~IklwDGVS------~rCv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 268 RYSS-TGSLYVTASKDGAIKLWDGVS------NRCVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRM 339 (430)
T ss_pred EecC-CccEEEEeccCCcEEeecccc------HHHHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCce
Confidence 9999 999999999999999999887 789998864 54 4699999999999986 889999999999999999
Q ss_pred ccccccCCCc-----ccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeeccccccCChHHHHHHHh-hc
Q 046899 324 KQDYGELKYP-----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMIDLIYRPEEEVLAELD-KF 396 (407)
Q Consensus 324 ~~~~~~~~~~-----v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~h 396 (407)
+..+.+.+.. -+...|+.. .++++ .--..+.+.-||.+ ++..+..+. ||
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNht------------------EdyVl~pDEas~slcsWdaR------tadr~~l~slgH 395 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHT------------------EDYVLFPDEASNSLCSWDAR------TADRVALLSLGH 395 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCc------------------cceEEccccccCceeecccc------chhhhhhcccCC
Confidence 9988765321 122333332 33444 22334478899998 677766665 89
Q ss_pred ccceeEeeccC
Q 046899 397 KSHIFGCDKSC 407 (407)
Q Consensus 397 ~~~v~~~~~s~ 407 (407)
.+.|..+.-||
T Consensus 396 n~a~R~i~HSP 406 (430)
T KOG0640|consen 396 NGAVRWIVHSP 406 (430)
T ss_pred CCCceEEEeCC
Confidence 99998887664
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.1e-25 Score=175.09 Aligned_cols=296 Identities=19% Similarity=0.232 Sum_probs=208.9
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeeccc------CcccCCc-ceeeEEEeeCCCceEEEEEeCCCCeEEEEee
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQF------NEEARSP-FVKKFKTIIHPGEVNRIRELPQNSKIVATHT 103 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~------~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~ 103 (407)
+-.-...++.|.|. .+.++++.+.|+..-+.+ .+....| ...+.+...|.+.|.|.+|+| .|++||||+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecC
Confidence 33334556788773 667888889998854411 1223344 444445556899999999999 999999999
Q ss_pred CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC-ccc-cccCCCCCCCCCC
Q 046899 104 DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS-KNA-SKSGGNGDKPLES 181 (407)
Q Consensus 104 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~i~i~d~ 181 (407)
.|++|++.-++...+.. .+|.....--||+|+-.-+-.. ..... .++ .|..|..|.+-|.
T Consensus 109 ndk~ik~l~fn~dt~~~--~g~dle~nmhdgtirdl~fld~----------------~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNA--TGHDLEFNMHDGTIRDLAFLDD----------------PESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred CCceEEEEecccccccc--cCcceeeeecCCceeeeEEecC----------------CCcCceEEEecCCCcceEEEeec
Confidence 99999998877554332 2222111111555543322111 00011 122 2456667777789
Q ss_pred CCcCceeeEeecccCEEEE-EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--cc-----CcceEEEEecCCCCC
Q 046899 182 PSIGARGKYLGHEDTVEDV-QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AH-----NADIHCVDWNPHDVN 253 (407)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~l-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~-----~~~v~~l~~~~~~~~ 253 (407)
..++..+.+.+|++.|.++ .|+ + .+|++|+.|.+|++||++-.. ++..+. .| .+.|.+++..| .++
T Consensus 171 ~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgr 244 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGR 244 (350)
T ss_pred CCCCcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-Ccc
Confidence 9999999999999999887 454 3 689999999999999999876 444432 22 25789999999 999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC--c--cccccc
Q 046899 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG--E--KQDYGE 329 (407)
Q Consensus 254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~--~--~~~~~~ 329 (407)
+|++|-.|.+..+||+|. +.+++.+..|...|.++.|+|...|+| +|+.|..|++-|+...- + +.....
T Consensus 245 ll~sg~~dssc~lydirg------~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRG------GRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred eeeeccCCCceEEEEeeC------CceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccchhhcCceEEEEe
Confidence 999999999999999999 899999999999999999999999886 99999999999987421 1 111223
Q ss_pred CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 330 LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 330 ~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
|...+....|.|. .--.++.+.|.++.+|-++
T Consensus 318 hkdk~i~~rwh~~------------------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQ------------------DFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCc------------------cceeeeccCcceEEEeccC
Confidence 4443333333322 3345678889999999764
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.4e-27 Score=203.26 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=218.6
Q ss_pred hhhhhhhhccCceEEEeeeecccCCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEE
Q 046899 13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNR 88 (407)
Q Consensus 13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 88 (407)
..++.-|++-.-. ..++..-+..++.|.| +++..++- ++.||... ...+ .+.+ ..-+..|.+
T Consensus 8 t~e~~~w~~~~~~-----~~~ke~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~-----~~~~-~k~~--srFk~~v~s 73 (487)
T KOG0310|consen 8 TPEIRYWRQETFP-----PVHKEHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSV-----TRSV-RKTF--SRFKDVVYS 73 (487)
T ss_pred Cccchhhhhhccc-----ccccccCcceeEecCCCCCCceEEeccc-EEEEEecc-----hhhh-hhhH--HhhccceeE
Confidence 3445556554221 2334444666778887 56665544 47777332 1111 1111 135678999
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899 89 IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA 168 (407)
Q Consensus 89 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (407)
+.|-. ||++||+|+..|.|+|+|+.+...+..+..|+..+.. .. |.+ ..+..++
T Consensus 74 ~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~----------------~~-------f~~--~d~t~l~ 127 (487)
T KOG0310|consen 74 VDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHV----------------TK-------FSP--QDNTMLV 127 (487)
T ss_pred EEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeE----------------EE-------ecc--cCCeEEE
Confidence 99887 9999999999999999997775566666666554210 00 111 1124567
Q ss_pred cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec
Q 046899 169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~ 248 (407)
+++.|+.+++||+.+...+..+.+|++.|.|.+|+|..+.+++|||.||+|++||++.... .+.+ ..|..+|-.+.+-
T Consensus 128 s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~e-lnhg~pVe~vl~l 205 (487)
T KOG0310|consen 128 SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVE-LNHGCPVESVLAL 205 (487)
T ss_pred ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-eeEE-ecCCCceeeEEEc
Confidence 7888899999999988876688999999999999998878999999999999999998852 3444 4899999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 249 PHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 249 ~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
| .|..+++++ ...|++||+-+. ++.+..+..|...|+|+++..++..|+ ||+-|+.|++||+.+.+.+..+.
T Consensus 206 p-sgs~iasAg-Gn~vkVWDl~~G-----~qll~~~~~H~KtVTcL~l~s~~~rLl-S~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 206 P-SGSLIASAG-GNSVKVWDLTTG-----GQLLTSMFNHNKTVTCLRLASDSTRLL-SGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred C-CCCEEEEcC-CCeEEEEEecCC-----ceehhhhhcccceEEEEEeecCCceEe-ecccccceEEEEccceEEEEeee
Confidence 9 888999887 457999999862 455556666999999999999998875 99999999999988877666553
Q ss_pred cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899 329 ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW 376 (407)
Q Consensus 329 ~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw 376 (407)
..+||.+++.||| +..++.|..+|.+-+=
T Consensus 278 -~~~pvLsiavs~d------------------d~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 278 -YPGPVLSIAVSPD------------------DQTVVIGMSNGLVSIR 306 (487)
T ss_pred -cccceeeEEecCC------------------CceEEEecccceeeee
Confidence 4678888888887 7778888888866554
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=198.09 Aligned_cols=265 Identities=16% Similarity=0.231 Sum_probs=213.4
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
..+.++...| ..+.++||+.|..+.++|..+++.+..+.+|...+ -++. ....
T Consensus 220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki---------~~v~-----------------~~~~ 272 (506)
T KOG0289|consen 220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKI---------TSVK-----------------FHKD 272 (506)
T ss_pred CCeeEEeecC-CCCcceecCCCCceEEEecchhhhhhhccCcceEE---------EEEE-----------------eccc
Confidence 5677887777 46789999999999999999999998888875432 1111 2222
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH 243 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 243 (407)
.....+++.+..|++|.............|..+|+.+..+|.| .||++++.|+...+.|++++.......-....-.++
T Consensus 273 ~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 273 LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred hhheeecCCcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 2345667888899999988888888888999999999999999 899999999999999999998422222222345689
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
+.+|+| ||.+|++|..||.|+|||+.. ...+..|.+|+++|..++|+.+|-|| |+++.|+.|++||+++.+.
T Consensus 352 s~~fHp-DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~vk~i~FsENGY~L-at~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 352 SAAFHP-DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPVKAISFSENGYWL-ATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred EeeEcC-CceEEeccCCCceEEEEEcCC------ccccccCCCCCCceeEEEeccCceEE-EEEecCCeEEEEEehhhcc
Confidence 999999 999999999999999999999 78899999999999999999999876 7999999999999999888
Q ss_pred ccccccCC-CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeE
Q 046899 324 KQDYGELK-YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFG 402 (407)
Q Consensus 324 ~~~~~~~~-~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 402 (407)
..++.-.. .++..+.|.+. +.+++.++.|=.|++++-. ...+.++..+.-|.+..++
T Consensus 424 ~kt~~l~~~~~v~s~~fD~S------------------Gt~L~~~g~~l~Vy~~~k~----~k~W~~~~~~~~~sg~st~ 481 (506)
T KOG0289|consen 424 FKTIQLDEKKEVNSLSFDQS------------------GTYLGIAGSDLQVYICKKK----TKSWTEIKELADHSGLSTG 481 (506)
T ss_pred cceeeccccccceeEEEcCC------------------CCeEEeecceeEEEEEecc----cccceeeehhhhcccccce
Confidence 87776433 35666666554 7778777666677777643 2257888999999988888
Q ss_pred eecc
Q 046899 403 CDKS 406 (407)
Q Consensus 403 ~~~s 406 (407)
|.|.
T Consensus 482 v~Fg 485 (506)
T KOG0289|consen 482 VRFG 485 (506)
T ss_pred eeec
Confidence 8884
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=200.00 Aligned_cols=294 Identities=16% Similarity=0.203 Sum_probs=221.5
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
.....|.-+|.+|+++| ++.+.++++.||+|.-|++.++.....+...... ++.--....... ..+.....
T Consensus 136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-------~k~~~~~~k~~r-~~h~keil 206 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-------LKSHGNPLKESR-KGHVKEIL 206 (479)
T ss_pred eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchh-------hhhccCCCCccc-ccccceeE
Confidence 34446999999999998 8889999999999999999988755322111000 000000000000 13334445
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
.++.+....++++++.|..+.||+..+++.++.+.+|.+.|.+++|-..- +.+++++.|++|++|++.... .+.++.
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s--~vetly 283 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLS--YVETLY 283 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhH--HHHHHh
Confidence 56667777889999999999999999999999999999999999997644 789999999999999999877 788899
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
+|++.|.+|.... -++.+-+|+.|+++++|++.. +....+.+|.+.+-|++|-.+.. |+|||.||.|.+|
T Consensus 284 GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-------esqlifrg~~~sidcv~~In~~H--fvsGSdnG~IaLW 353 (479)
T KOG0299|consen 284 GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-------ESQLIFRGGEGSIDCVAFINDEH--FVSGSDNGSIALW 353 (479)
T ss_pred CCccceeeechhc-ccceEEeccccceeEEEeccc-------cceeeeeCCCCCeeeEEEecccc--eeeccCCceEEEe
Confidence 9999999999987 778888888999999999954 56667888999999999997766 4699999999999
Q ss_pred eCCCCCcccccccCCC------cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899 317 DHEKIGEKQDYGELKY------PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL 390 (407)
Q Consensus 317 d~~~~~~~~~~~~~~~------~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~ 390 (407)
++-+.+.+.+.....+ ++....| +.++.+..+ .+.+++|+-+|+||+|.+.+... .-+++
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~W-----------itsla~i~~-sdL~asGS~~G~vrLW~i~~g~r--~i~~l 419 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFW-----------ITSLAVIPG-SDLLASGSWSGCVRLWKIEDGLR--AINLL 419 (479)
T ss_pred eecccCceeEeeccccccCCccccccccc-----------eeeeEeccc-CceEEecCCCCceEEEEecCCcc--cccee
Confidence 9998777755443221 1111112 344455554 88999999999999999984322 12445
Q ss_pred HHHhhcccceeEeeccC
Q 046899 391 AELDKFKSHIFGCDKSC 407 (407)
Q Consensus 391 ~~~~~h~~~v~~~~~s~ 407 (407)
..+. -.+.|++++|+.
T Consensus 420 ~~ls-~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 420 YSLS-LVGFVNSLAFSN 435 (479)
T ss_pred eecc-cccEEEEEEEcc
Confidence 5555 677899999873
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.2e-26 Score=183.12 Aligned_cols=262 Identities=18% Similarity=0.249 Sum_probs=210.5
Q ss_pred cCCCeeEEEEe---ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 35 LVWPSLSCRWG---PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 35 ~~~p~~s~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
..-++.++.|. ..+++++.|+++++|... ...+.......+|.+.|-.++|.|...+++++++.|.+|++|
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e------~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLE------RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEec------chhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 34467778774 469999999999999433 124444555668999999999999999999999999999999
Q ss_pred eCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe
Q 046899 112 DVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL 191 (407)
Q Consensus 112 d~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 191 (407)
|+..+++...+..... .....|... +..++.+..+..+...|..+.+.+...+
T Consensus 93 d~r~~k~~~~i~~~~e------ni~i~wsp~---------------------g~~~~~~~kdD~it~id~r~~~~~~~~~ 145 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGE------NINITWSPD---------------------GEYIAVGNKDDRITFIDARTYKIVNEEQ 145 (313)
T ss_pred EeccCcEEEEeeccCc------ceEEEEcCC---------------------CCEEEEecCcccEEEEEecccceeehhc
Confidence 9999887765533211 122333322 2346667778888888888777766654
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
....++.++|+.++ ++|+..+..|.|.|-.....+ .+..+.+|+....||.|+| +|++||+|+.|..+.+||+..
T Consensus 146 -~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk--pv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 146 -FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK--PVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred -ccceeeeeeecCCC-CEEEEecCCceEEEEeccccc--cccccccCCcceEEEEECC-CCceEeeccccceeeccChhH
Confidence 45678889999766 777777778999999888766 6888999999999999999 999999999999999999999
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.-+++.+..+.=+|+.+.|+.+|++| |++|.|..|-|=+++++..+-.++ +.+|-..++|.|.
T Consensus 221 ------LiC~R~isRldwpVRTlSFS~dg~~l-ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 221 ------LICERCISRLDWPVRTLSFSHDGRML-ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPK 283 (313)
T ss_pred ------hhhheeeccccCceEEEEeccCccee-eccCccceEEeEecccCCeEEEee-ccCCceeEEecCC
Confidence 78999999999999999999999965 899999999999999998877665 3566677888776
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-26 Score=207.79 Aligned_cols=270 Identities=19% Similarity=0.235 Sum_probs=221.3
Q ss_pred eCCCceE---EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC------cccccCcCCCCCCC--------------CCcEE
Q 046899 81 IHPGEVN---RIRELPQNSKIVATHTDSPDVLIWDVEAQPN------RHAVLGAADSHPDL--------------DQSVV 137 (407)
Q Consensus 81 ~h~~~v~---~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~--------------d~~i~ 137 (407)
.|...|+ .+...++++++|.|||.||.|++|++..... ...++.|..++.+. |-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3566666 5666666888999999999999999876533 45566677776655 89999
Q ss_pred EEeccccc----cccccCCCCCccccc-CCCCCccccccCCCCCCCCCCCCcCc--ee--------eEe-ecccCEEEEE
Q 046899 138 LWSIQDHV----SALAAEPGSAKSTAS-GGANSKNASKSGGNGDKPLESPSIGA--RG--------KYL-GHEDTVEDVQ 201 (407)
Q Consensus 138 ~w~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~d~~~~~~--~~--------~~~-~~~~~v~~l~ 201 (407)
+|+..... ..+..|.+.+.+++. .......++|+-|+.|.+||++++.. +. .+. ++..+|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 99988762 356667777777666 66667788899999999999997732 22 222 6788999999
Q ss_pred ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899 202 FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 202 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
.++.+ ..|++|+..+.|++||.++.. .+..+.+|...|.++..++ +|+.+++++.||+|++||+.. ..++
T Consensus 179 ~N~t~-t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgq------QrCl 248 (735)
T KOG0308|consen 179 MNQTG-TIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQ------QRCL 248 (735)
T ss_pred cCCcc-eEEEecCcccceEEecccccc--ceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccc------ccee
Confidence 99999 899999999999999999988 6778889999999999999 999999999999999999999 8999
Q ss_pred eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc
Q 046899 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG 361 (407)
Q Consensus 282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~ 361 (407)
.++..|+..|++++.+|+-.+++ +|+.||.|..=|+++......+...+.||..+.... |.
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vY-sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~------------------~~ 309 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVY-SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE------------------HD 309 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEE-ecCCCCcEEecccCCchhheEeecCCCchhhhhhcc------------------cc
Confidence 99999999999999999988774 999999999999999766666666667766555432 25
Q ss_pred ceeeeEEEeeeEEEeecc
Q 046899 362 RLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 362 ~~i~~~~~d~~i~iwd~~ 379 (407)
+.+-+++.|+.|+-|...
T Consensus 310 ~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 310 NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CCceeeeccccceecCCc
Confidence 556777888888888664
No 86
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.6e-26 Score=196.11 Aligned_cols=266 Identities=18% Similarity=0.302 Sum_probs=196.7
Q ss_pred hhhhhhccCceEEEeeeecc--cCCCeeEEEEee----------cccccCccceEEEEeecccCcccC-CcceeeE----
Q 046899 15 RYTQWKSLVPVLYDWLANHN--LVWPSLSCRWGP----------QLEQATYKNRQRLYLSEQFNEEAR-SPFVKKF---- 77 (407)
Q Consensus 15 ~~~~w~~~~~~~y~~l~~~~--~~~p~~s~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~---- 77 (407)
++-.+++..|-+| .+|. ++-+.+.++|+. .++.|+.+-.+.|| +++--+. .|.+..-
T Consensus 153 EvYVyn~~e~nlY---vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW---DLDI~d~v~P~~~LGs~~s 226 (463)
T KOG0270|consen 153 EVYVYNEEEENLY---VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW---DLDIVDAVLPCVTLGSKAS 226 (463)
T ss_pred EEEEEcCCCccee---EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe---ccccccccccceeechhhh
Confidence 3344555555555 4455 344556778854 36677778888899 3332221 1111111
Q ss_pred -----------EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccc
Q 046899 78 -----------KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS 146 (407)
Q Consensus 78 -----------~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~ 146 (407)
...+|++.|.+|+|+....++||+||.|.+|++||+.++++.
T Consensus 227 k~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~--------------------------- 279 (463)
T KOG0270|consen 227 KKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK--------------------------- 279 (463)
T ss_pred hhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc---------------------------
Confidence 123699999999999878889999999999999999887543
Q ss_pred ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 046899 147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS 226 (407)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 226 (407)
.++..|.+.|.+++|+|..+..|++|+.|++|.+.|.|.
T Consensus 280 -----------------------------------------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 280 -----------------------------------------SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred -----------------------------------------eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 334458899999999999989999999999999999996
Q ss_pred CCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899 227 GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 227 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s 306 (407)
... ....-...+.|-.+.|+|.....++++..||+|+-+|+|.+ ++++.++++|.++|.+|.+++.-+.+++|
T Consensus 319 ~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 319 PSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred ccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CCceeEEEeccCCcceEEecCCCCcceee
Confidence 442 11112346788999999988899999999999999999996 59999999999999999999999999999
Q ss_pred eeCCCeEEEEeCCCCCcccccccCCCc---ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 307 SAEDGILNIWDHEKIGEKQDYGELKYP---IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 307 ~~~d~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
++.|+.|++|++..... .....|... ..+.++.|+. ...++.|+..+.++|||+.
T Consensus 392 ~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~-----------------a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDV-----------------AFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccceEEEEeecCCCC-cccccccccccceeecccCCCc-----------------ceEEEecCccceEEEeecc
Confidence 99999999999986332 222222221 2233343331 3456677777799999998
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=189.55 Aligned_cols=303 Identities=12% Similarity=0.126 Sum_probs=225.6
Q ss_pred ccCcchhhhhhhhccCceEEEeeeecccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCccee-eEEEeeCC
Q 046899 8 MERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVK-KFKTIIHP 83 (407)
Q Consensus 8 ~~~~~~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~h~ 83 (407)
+.....|+.....+-++.. -|+..+.+ ...+++..| .+.+++.|.+.-++ +.|... ...+.||.
T Consensus 194 ~~la~~d~~~~~~q~ash~--gLH~t~~p-gi~ald~~~s~~~ilTGG~d~~av~~---------d~~s~q~l~~~~Gh~ 261 (506)
T KOG0289|consen 194 EKLATTDELSCLLQVASHT--GLHSTSTP-GITALDIIPSSSKILTGGEDKTAVLF---------DKPSNQILATLKGHT 261 (506)
T ss_pred cccccHHHHHHHHhcCCCc--ceeccCCC-CeeEEeecCCCCcceecCCCCceEEE---------ecchhhhhhhccCcc
Confidence 3344466666677777753 23444444 344555544 57889999778777 222222 22334899
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
..|+.+.|+| +...+++++.|..|+||......+......|...+. +......
T Consensus 262 kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~--------------------------~ls~h~t 314 (506)
T KOG0289|consen 262 KKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT--------------------------GLSLHPT 314 (506)
T ss_pred eEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccce--------------------------eeeeccC
Confidence 9999999999 888999999999999999987766655555544321 1122223
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeec--ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGH--EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 241 (407)
..++++++.++.....|..++..+...... .-.+++.+||||| .+|.+|..||.|++||+.++. ....+.+|.++
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~--~~a~Fpght~~ 391 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGP 391 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcc--ccccCCCCCCc
Confidence 345788888888888888888877766542 2358999999999 899999999999999999888 67788899999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC-
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE- 319 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~- 319 (407)
|..++|+. +|.+|+++..|+.|++||+|. .+...++... ...|.++.|.+.|.+| +.++.|=+|.+++-.
T Consensus 392 vk~i~FsE-NGY~Lat~add~~V~lwDLRK------l~n~kt~~l~~~~~v~s~~fD~SGt~L-~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 392 VKAISFSE-NGYWLATAADDGSVKLWDLRK------LKNFKTIQLDEKKEVNSLSFDQSGTYL-GIAGSDLQVYICKKKT 463 (506)
T ss_pred eeEEEecc-CceEEEEEecCCeEEEEEehh------hcccceeeccccccceeEEEcCCCCeE-EeecceeEEEEEeccc
Confidence 99999999 999999999999999999999 5555555432 2379999999999987 577666566665522
Q ss_pred -CCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 320 -KIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 320 -~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
+..++..+..|.+..+++.|... ..+++++++|..++|+.+
T Consensus 464 k~W~~~~~~~~~sg~st~v~Fg~~------------------aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 464 KSWTEIKELADHSGLSTGVRFGEH------------------AQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeeehhhhcccccceeeeccc------------------ceEEeeccchhheEEeec
Confidence 55666777777777777777544 778999999999888764
No 88
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8e-26 Score=180.36 Aligned_cols=241 Identities=19% Similarity=0.292 Sum_probs=189.8
Q ss_pred ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE-eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC
Q 046899 46 PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE-LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG 124 (407)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~ 124 (407)
..++|.++|+.+||+ ..+++.+......+.||.++|+.++| +|.-|.+||++++||.|.||.-..++-.
T Consensus 24 krlATcsSD~tVkIf-----~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~----- 93 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIF-----EVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT----- 93 (299)
T ss_pred ceeeeecCCccEEEE-----EEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh-----
Confidence 458999999999999 44455555667777899999999998 4678999999999999999997765211
Q ss_pred cCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC
Q 046899 125 AADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP 204 (407)
Q Consensus 125 ~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 204 (407)
.......|...|++++|-|
T Consensus 94 -------------------------------------------------------------k~~e~~~h~~SVNsV~wap 112 (299)
T KOG1332|consen 94 -------------------------------------------------------------KAYEHAAHSASVNSVAWAP 112 (299)
T ss_pred -------------------------------------------------------------hhhhhhhhcccceeecccc
Confidence 1234457999999999988
Q ss_pred CC-CcEEEEEeCCCcEEEEEcCCC-CCCceeeecccCcceEEEEecCCC--C-----------CEEEEEeCCCcEEEEeC
Q 046899 205 SS-AQEFCSVGDDSCLILWDARSG-STPAVKVEKAHNADIHCVDWNPHD--V-----------NLILTGSADNSIHMFDR 269 (407)
Q Consensus 205 ~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~~~~~--~-----------~~l~tg~~dg~i~vwd~ 269 (407)
.+ +.+|++++.||.|.+.+.+.. .....+....|.-.|++++|.|.. + +.|++|+.|..|+||+.
T Consensus 113 heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~ 192 (299)
T KOG1332|consen 113 HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF 192 (299)
T ss_pred cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec
Confidence 64 257999999999999999876 333455677899999999999831 2 56999999999999999
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCC---CCEEEEeeCCCeEEEEeCCCCCcc---cccccCCCcccCCCCcCcc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGILNIWDHEKIGEK---QDYGELKYPIIHPAYSSDM 343 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~ll~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~ 343 (407)
.... ...-.+|.+|.+.|+.++|.|.- +.-||+++.||++.||-.+..... .-+.....+++.+.||..
T Consensus 193 ~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s- 267 (299)
T KOG1332|consen 193 DSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS- 267 (299)
T ss_pred CCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc-
Confidence 8742 55666799999999999999964 334699999999999987732111 223345566777888765
Q ss_pred hhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
++.|+.+..|..|.+|.-+
T Consensus 268 -----------------Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 268 -----------------GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -----------------ccEEEEecCCcEEEEEEeC
Confidence 7888888899999999865
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=5.3e-26 Score=183.64 Aligned_cols=285 Identities=15% Similarity=0.125 Sum_probs=207.6
Q ss_pred cccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899 33 HNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL 109 (407)
Q Consensus 33 ~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~ 109 (407)
..++-|...+.++. .+.+..-|....+|.+. +.. ..-...||++.|+|+...- +.+.|+||+.|.+++
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~------nGe--rlGty~GHtGavW~~Did~-~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL------NGE--RLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAK 77 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEec------CCc--eeeeecCCCceEEEEEecC-CcceeeeccccceeE
Confidence 34566666666654 36677778888899442 222 2334459999999999776 788999999999999
Q ss_pred EEeCcCCCCcccccCcCCCCCCC---CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC----
Q 046899 110 IWDVEAQPNRHAVLGAADSHPDL---DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP---- 182 (407)
Q Consensus 110 vwd~~~~~~~~~~~~~~~~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~---- 182 (407)
+||+.+++++............. ++++.+...+.. -+..+.+.++|++
T Consensus 78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~-------------------------mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ-------------------------MGYTCFVSVFDIRDDSS 132 (327)
T ss_pred EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh-------------------------cCcceEEEEEEccCChh
Confidence 99999998766544322110000 222222222110 1112222333332
Q ss_pred ---CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe
Q 046899 183 ---SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS 259 (407)
Q Consensus 183 ---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~ 259 (407)
..+++..+..+...++..-|.|-+ ..+++|.+||.|..||++++.. .+.....|...|+.|+++| +..+++||+
T Consensus 133 ~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~-d~T~FiT~s 209 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSR-DRTYFITGS 209 (327)
T ss_pred hhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccC-CcceEEecc
Confidence 455677777788999999999999 8999999999999999999863 4566678999999999999 999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-eEE------------EEeCCCCCcccc
Q 046899 260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-ILN------------IWDHEKIGEKQD 326 (407)
Q Consensus 260 ~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-~i~------------vwd~~~~~~~~~ 326 (407)
.|.+-++||+++ .+.+.++.. ..||++.+++|...+++.-|+.+. .|. +|++--.+++..
T Consensus 210 ~Dttakl~D~~t------l~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr 282 (327)
T KOG0643|consen 210 KDTTAKLVDVRT------LEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR 282 (327)
T ss_pred cCccceeeeccc------eeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence 999999999999 788888874 789999999998887764444332 122 222222344456
Q ss_pred cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+.+|=+||.+++|+|+ +...++|+.||.|||....
T Consensus 283 vkGHFGPINsvAfhPd------------------GksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 283 VKGHFGPINSVAFHPD------------------GKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ccccccCcceeEECCC------------------CcccccCCCCceEEEEEec
Confidence 7789999999999999 8889999999999998765
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.5e-26 Score=195.07 Aligned_cols=262 Identities=18% Similarity=0.222 Sum_probs=206.3
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
.+.|....++|++. +++++.|..+++|.. ..+. .-....+.|-.+.|+++.|.+ ++..+++++.|+.+++
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v---~~~k---~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNV---LGEK---SELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRL 245 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhc---ccch---hhhhhhhhccCCCcceeeecC-CCceEEeecCCCceee
Confidence 35778888999886 899999999999921 1111 112334446778999999998 7778888899999999
Q ss_pred EeCcCCCCcccccCcCCCCCCC--------------CCcEEEEeccccccccccCCCCCcc-cccCCCCCccccccCCCC
Q 046899 111 WDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSALAAEPGSAKS-TASGGANSKNASKSGGNG 175 (407)
Q Consensus 111 wd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (407)
|++.......++.+|...+... |.++++||+....+.-..-+..... +..+ ...++++-.|+.
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence 9999999888888888766554 8999999999864433322222111 1111 345677889999
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc----CcceEEEEecCCC
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH----NADIHCVDWNPHD 251 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~~~~~ 251 (407)
++.||.....+......+. .|+++..++++ ..+.+++.|.++.+.|+++.. ....+.+. ....+.+.|+| +
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~e--I~~~~sA~g~k~asDwtrvvfSp-d 398 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKE--IRQTFSAEGFKCASDWTRVVFSP-D 398 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccccc--EEEEeeccccccccccceeEECC-C
Confidence 9999999999998887665 89999999999 678888999999999999887 34444322 23578899999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC--CEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
+.|+++|+.||.|+||++.+ +++...+..... .|++++|+|.|.+++ +++.++.+++|
T Consensus 399 ~~YvaAGS~dgsv~iW~v~t------gKlE~~l~~s~s~~aI~s~~W~~sG~~Ll-sadk~~~v~lW 458 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFT------GKLEKVLSLSTSNAAITSLSWNPSGSGLL-SADKQKAVTLW 458 (459)
T ss_pred CceeeeccCCCcEEEEEccC------ceEEEEeccCCCCcceEEEEEcCCCchhh-cccCCcceEec
Confidence 99999999999999999999 777777766433 599999999999985 89999999999
No 91
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=201.11 Aligned_cols=306 Identities=15% Similarity=0.197 Sum_probs=222.7
Q ss_pred cccccCccceEEEEeecccCcccCCccee----------------eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVK----------------KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
.++.|+.++.+|||....++.-...|... .....+---..-++.|.+ ..+.|.+...|..+.|
T Consensus 272 ~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fde-t~~klscVYndhSlYv 350 (1080)
T KOG1408|consen 272 LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDE-TTDKLSCVYNDHSLYV 350 (1080)
T ss_pred eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecC-CCceEEEEEcCceEEE
Confidence 47788999999999776332222211111 000011112234566777 5667888899999999
Q ss_pred EeCcCCCCcccc---cCcCCCC------------------CCC-------CCcEEEEecccccc--c-----c-------
Q 046899 111 WDVEAQPNRHAV---LGAADSH------------------PDL-------DQSVVLWSIQDHVS--A-----L------- 148 (407)
Q Consensus 111 wd~~~~~~~~~~---~~~~~~~------------------~~~-------d~~i~~w~~~~~~~--~-----~------- 148 (407)
||++....+... .-|...+ +.. |++|++|++..... . +
T Consensus 351 WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki 430 (1080)
T KOG1408|consen 351 WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKI 430 (1080)
T ss_pred EeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcC
Confidence 999875433211 1111111 100 99999999876200 0 0
Q ss_pred c-------------------------cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEEC
Q 046899 149 A-------------------------AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC 203 (407)
Q Consensus 149 ~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 203 (407)
. ....+...+........+++|...|.++++++...+....+.+|+.+|.|+.|+
T Consensus 431 ~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 431 PYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYS 510 (1080)
T ss_pred ccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeec
Confidence 0 000112223334444678889999999999999999999999999999999998
Q ss_pred CC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE--------------------------------------
Q 046899 204 PS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH-------------------------------------- 243 (407)
Q Consensus 204 ~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-------------------------------------- 243 (407)
.. +..+||+++.|..|++||+...-. ++.++.+|...|+
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccc-hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 53 336899999999999999975421 3444455554444
Q ss_pred -----------EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeC
Q 046899 244 -----------CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 244 -----------~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
.++..| ...++++++.|..|+|||+.+ ++..+.|++ |++....+...|.|-|| |+...
T Consensus 590 ~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~s------gKq~k~FKgs~~~eG~lIKv~lDPSgiY~-atScs 661 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIES------GKQVKSFKGSRDHEGDLIKVILDPSGIYL-ATSCS 661 (1080)
T ss_pred cccccccceEEEeeeCC-CcceEEEEecccceEEEeccc------cceeeeecccccCCCceEEEEECCCccEE-EEeec
Confidence 444455 567999999999999999999 899999986 67788999999999987 78889
Q ss_pred CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 310 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
|+++.++|+-+++++..+.+|...|+++.|++| -..|++.+.||+|.||.+..
T Consensus 662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD------------------CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND------------------CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEeccchhhhhhcCcchheeeeeeccc------------------chhheeecCCceEEEEECch
Confidence 999999999999999999999999999999999 45688999999999999974
No 92
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.8e-25 Score=205.91 Aligned_cols=166 Identities=19% Similarity=0.363 Sum_probs=136.8
Q ss_pred eEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCC-----CceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899 189 KYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKAHNADIHCVDWNPHDVNLILTGSADN 262 (407)
Q Consensus 189 ~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg 262 (407)
.+.+|.+.|.+++|+| ++ ++|++|+.|++|++||+.+... .....+.+|...|.+++|+|..+++|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 4678999999999999 55 7999999999999999976531 135677899999999999994457999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcc-cCCCCcC
Q 046899 263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI-IHPAYSS 341 (407)
Q Consensus 263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~s~ 341 (407)
.|++||+++ ++.+..+.+|...|.+++|+|++.. |++++.|++|++||+++++.+..+.+|.... ..+.|.+
T Consensus 149 tVrIWDl~t------g~~~~~l~~h~~~V~sla~spdG~l-Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 149 VVNVWDVER------GKAVEVIKCHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred EEEEEECCC------CeEEEEEcCCCCceEEEEEECCCCE-EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 999999998 7888999999999999999999985 5799999999999999988887777776542 2233433
Q ss_pred cchhccccceeeeeEeeCccceeeeEE----EeeeEEEeeccc
Q 046899 342 DMLDIETKLLTSIGMHLIHGRLLVCLT----MVKVLEIWRMID 380 (407)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~i~~~~----~d~~i~iwd~~~ 380 (407)
+ +..|++++ .|+.|+|||+..
T Consensus 222 ~------------------~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 222 R------------------KDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred C------------------CCeEEEEecCCCCCCeEEEEeCCC
Confidence 3 45555443 478999999973
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.8e-26 Score=179.84 Aligned_cols=240 Identities=19% Similarity=0.264 Sum_probs=188.3
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
.|++.|..+...- -|..|||++.|++|+|+.++....
T Consensus 9 ~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 9 QHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 5888888877443 788999999999999999875421
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEE-CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQF-CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
.+.+.++.+|.++|..++| +|.-+.+||+++.||+|.||.-.+++.........|.
T Consensus 46 -----------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 46 -----------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred -----------------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 1356788899999999999 4544489999999999999999988755566777899
Q ss_pred cceEEEEecCCC-CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC---CC----------CEEE
Q 046899 240 ADIHCVDWNPHD-VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD---KS----------SVFG 305 (407)
Q Consensus 240 ~~v~~l~~~~~~-~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~----------~ll~ 305 (407)
..|++++|.|.+ +-.|++++.||.|.|.+.+.... .........|.-.|+++.|.|- |. +-|+
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence 999999999954 56788999999999999987421 3445566789999999999986 41 2258
Q ss_pred EeeCCCeEEEEeCCCCC--cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccccc
Q 046899 306 SSAEDGILNIWDHEKIG--EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY 383 (407)
Q Consensus 306 s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~ 383 (407)
||+.|+.|+||+....+ ...++.+|...|+.+++.|.+ +.. ...|++++.||++.||......
T Consensus 180 SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~-----gl~---------~s~iAS~SqDg~viIwt~~~e~- 244 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV-----GLP---------KSTIASCSQDGTVIIWTKDEEY- 244 (299)
T ss_pred ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc-----CCC---------ceeeEEecCCCcEEEEEecCcc-
Confidence 99999999999998753 335688999999999998872 111 4579999999999999887321
Q ss_pred CChHHHHHHHhhcccceeEeecc
Q 046899 384 RPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
+......+......++.+.||
T Consensus 245 --e~wk~tll~~f~~~~w~vSWS 265 (299)
T KOG1332|consen 245 --EPWKKTLLEEFPDVVWRVSWS 265 (299)
T ss_pred --CcccccccccCCcceEEEEEe
Confidence 222333444577788888887
No 94
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=4.5e-26 Score=198.13 Aligned_cols=240 Identities=18% Similarity=0.282 Sum_probs=204.6
Q ss_pred CCcEEEEecccc---ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcE
Q 046899 133 DQSVVLWSIQDH---VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQE 209 (407)
Q Consensus 133 d~~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 209 (407)
|+.|.+|++-.. .+.+..|...+..+........+++++.|+.+++||.++|+++..+. -...++|+.|+|++++.
T Consensus 236 D~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~ 314 (503)
T KOG0282|consen 236 DGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNI 314 (503)
T ss_pred CceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcE
Confidence 999999999763 34677777777777777778889999999999999999999999885 34578999999999899
Q ss_pred EEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CC
Q 046899 210 FCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HS 288 (407)
Q Consensus 210 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~ 288 (407)
|++|+.|+.|+.||+|+++ .+..+..|-+.|..+.|-+ ++..+++.+.|++++||+.+. ..++..+.. +.
T Consensus 315 fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~------~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRI------PVPIKNIADPEM 385 (503)
T ss_pred EEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCC------Cccchhhcchhh
Confidence 9999999999999999999 7888889999999999999 899999999999999999998 444443322 33
Q ss_pred CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC---CcccccccCCCc--ccCCCCcCcchhccccceeeeeEeeCccce
Q 046899 289 AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI---GEKQDYGELKYP--IIHPAYSSDMLDIETKLLTSIGMHLIHGRL 363 (407)
Q Consensus 289 ~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~--v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~ 363 (407)
....++..+|++.++ +.-+.|+.|.++.+... .....+.+|..+ -..+.|||| +..
T Consensus 386 hsmP~~~~~P~~~~~-~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD------------------G~~ 446 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWF-AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD------------------GRT 446 (503)
T ss_pred ccCcceecCCCCCee-hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC------------------CCe
Confidence 456789999999965 68899999999997642 334567776543 445789999 999
Q ss_pred eeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 364 LVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 364 i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
|++|..||.+.+||.. +..++..+++|...+..++|-|
T Consensus 447 l~SGdsdG~v~~wdwk------t~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 447 LCSGDSDGKVNFWDWK------TTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred EEeecCCccEEEeech------hhhhhhccccCCcceEEEEecC
Confidence 9999999999999999 8999999999999999998854
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=203.36 Aligned_cols=203 Identities=18% Similarity=0.276 Sum_probs=163.4
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
...||.+.|..|.|+. .++|++++.|.+||+|++....++.
T Consensus 364 ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~------------------------------------- 404 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLK------------------------------------- 404 (712)
T ss_pred hhhccchhheeccccc--CCeeEeccccccEEeecCCCcceee-------------------------------------
Confidence 3458999999999996 4589999999999999998665433
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA 237 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 237 (407)
.| .|.+.|+|++|+|.+.++|++|+.||+|+||++...+ +.....
T Consensus 405 -------------------------------~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~D 449 (712)
T KOG0283|consen 405 -------------------------------VF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWND 449 (712)
T ss_pred -------------------------------EE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehh
Confidence 33 5999999999999887999999999999999998776 444445
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--CC------CCCEEEEEEcCCCCC-EEEEee
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GH------SAAVLCVQWSPDKSS-VFGSSA 308 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h------~~~v~~v~~~~~~~~-ll~s~~ 308 (407)
-..-|++++|.| +|+..++|+.+|.+++|+.+. .+....+. .| ...|+.++|.|...- +| ..+
T Consensus 450 l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~------lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL-VTS 521 (712)
T KOG0283|consen 450 LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEG------LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL-VTS 521 (712)
T ss_pred hhhhheeEEecc-CCceEEEEEeccEEEEEEccC------CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE-Eec
Confidence 568899999999 899999999999999999987 44443332 11 227999999986654 55 567
Q ss_pred CCCeEEEEeCCCCCcccccccCCCc--ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 309 EDGILNIWDHEKIGEKQDYGELKYP--IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 309 ~d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
.|..|||+|.+....+..+.+.... -....|+.| +.+|++++.|..|+||+...
T Consensus 522 nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D------------------gk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 522 NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD------------------GKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCceEEEeccchhhhhhhcccccCCcceeeeEccC------------------CCEEEEeecCceEEEEeCCC
Confidence 7999999999887888888875442 223445555 99999999999999999853
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.6e-25 Score=200.86 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=164.4
Q ss_pred ccccccCCCCCCCCCCCCcCceeeE-------------------------------------eecccCEEEEEECCCCCc
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKY-------------------------------------LGHEDTVEDVQFCPSSAQ 208 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~-------------------------------------~~~~~~v~~l~~~~~~~~ 208 (407)
.+.+.++|++|++|++..+..-..+ -+....+.+++.+|++ +
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-q 472 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-Q 472 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-c
Confidence 4688999999999998763221111 0123468899999999 8
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899 209 EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH--DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286 (407)
Q Consensus 209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 286 (407)
.||+|...|.+++||+.+.+ ....+.+|..+|.|+.|+.- ...+||+++.|..|.|||+... ..++.++.+
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~ 545 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDG 545 (1080)
T ss_pred eecccCccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cchhhhhcc
Confidence 99999999999999999887 56778899999999999751 3468999999999999998653 345555555
Q ss_pred CCCCEEEEEE-------------------------------------------------cCCCCCEEEEeeCCCeEEEEe
Q 046899 287 HSAAVLCVQW-------------------------------------------------SPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 287 h~~~v~~v~~-------------------------------------------------~~~~~~ll~s~~~d~~i~vwd 317 (407)
|...|+++.| .|..+++ ++++.|..|+|||
T Consensus 546 HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v-~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 546 HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV-VTVCQDRNIRIFD 624 (1080)
T ss_pred cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE-EEEecccceEEEe
Confidence 6555555554 4555544 6999999999999
Q ss_pred CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcc
Q 046899 318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFK 397 (407)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~ 397 (407)
++++++.+.|.+....= |.+.+ ..+.+.+-+|++.+.|.++.|+|+. ++||++.+.||.
T Consensus 625 i~sgKq~k~FKgs~~~e--------------G~lIK-v~lDPSgiY~atScsdktl~~~Df~------sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHE--------------GDLIK-VILDPSGIYLATSCSDKTLCFVDFV------SGECVAQMTGHS 683 (1080)
T ss_pred ccccceeeeecccccCC--------------CceEE-EEECCCccEEEEeecCCceEEEEec------cchhhhhhcCcc
Confidence 99999999988643210 00111 3344447899999999999999999 899999999999
Q ss_pred cceeEeeccC
Q 046899 398 SHIFGCDKSC 407 (407)
Q Consensus 398 ~~v~~~~~s~ 407 (407)
..|+++.|+.
T Consensus 684 E~VTG~kF~n 693 (1080)
T KOG1408|consen 684 EAVTGVKFLN 693 (1080)
T ss_pred hheeeeeecc
Confidence 9999999973
No 97
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.5e-25 Score=191.22 Aligned_cols=274 Identities=15% Similarity=0.194 Sum_probs=218.6
Q ss_pred EEEeeCCC-cEEEEeCcCCCCcccccCcCCCCCCC---------------CCcEEEEeccccccc--cccCCCCCccccc
Q 046899 99 VATHTDSP-DVLIWDVEAQPNRHAVLGAADSHPDL---------------DQSVVLWSIQDHVSA--LAAEPGSAKSTAS 160 (407)
Q Consensus 99 l~tg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~---------------d~~i~~w~~~~~~~~--~~~~~~~~~~~~~ 160 (407)
+.+++.|. ++.+||+.++.....+.+........ ...+.+|.+...... ....|+.+...+.
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS 89 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence 33444444 48999999987665555441111111 457888888766443 3445666667777
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-------CCCCcee
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-------GSTPAVK 233 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~ 233 (407)
......++.++..+.+.+|.+.+|..+..+.+|-..|+|+.|+.+| .+|++||.||.|.+|++-. .......
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 7777778888899999999999999999999999999999999999 8999999999999998743 1233567
Q ss_pred eecccCcceEEEEecCC-CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899 234 VEKAHNADIHCVDWNPH-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~ 312 (407)
.+..|.-+|+.+...+. ....++|++.|.++++||+.. +..+.++. ...++.+++.+|-++.++ .|+.+|.
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~-fp~si~av~lDpae~~~y-iGt~~G~ 240 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTIT-FPSSIKAVALDPAERVVY-IGTEEGK 240 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEe-cCCcceeEEEcccccEEE-ecCCcce
Confidence 78899999999998772 246899999999999999999 88888886 467899999999999775 9999999
Q ss_pred EEEEeCCCCC----------------cccccccCCC--cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEE
Q 046899 313 LNIWDHEKIG----------------EKQDYGELKY--PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLE 374 (407)
Q Consensus 313 i~vwd~~~~~----------------~~~~~~~~~~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~ 374 (407)
|.+.++.+.. ....+.+|.+ +|++++.|-| +..+++|+.||.|.
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D------------------gtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD------------------GTLLLSGDEDGKVC 302 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC------------------ccEEEeeCCCCCEE
Confidence 9999886533 2233456666 7888888777 88999999999999
Q ss_pred EeeccccccCChHHHHHHHhhcccceeEeec
Q 046899 375 IWRMIDLIYRPEEEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 405 (407)
|||+. ..++++++..-++.|+.+.+
T Consensus 303 vWdi~------S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 303 VWDIY------SKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEecc------hHHHHHHHhhhccccceeEe
Confidence 99999 89999999988899998876
No 98
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-25 Score=205.86 Aligned_cols=220 Identities=21% Similarity=0.431 Sum_probs=179.4
Q ss_pred EEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899 41 SCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 41 s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 116 (407)
.+.|.. .++|.+..+.+.+| +++...+ .........|+..++++.|++...++|++|+.||+|++||++..
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vW---dlnk~~r--nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVW---DLNKSIR--NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred hcccccchhhhheeecCCCcEEEE---ecCcccc--chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 345653 48899999999999 3333212 22333445799999999999999999999999999999999865
Q ss_pred CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC
Q 046899 117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT 196 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 196 (407)
.... ++.+....
T Consensus 167 ~S~~--------------------------------------------------------------------t~~~nSES 178 (839)
T KOG0269|consen 167 KSKS--------------------------------------------------------------------TFRSNSES 178 (839)
T ss_pred cccc--------------------------------------------------------------------cccccchh
Confidence 4322 23345678
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~ 276 (407)
|..++|+|..++.|+++.+.|.+++||+|.... +...+.+|.++|.|+.|+| ++.+|||||.|+.|+|||+....
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~--- 253 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR--- 253 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchh-HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC---
Confidence 999999998779999999999999999998875 5778889999999999999 99999999999999999998744
Q ss_pred CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCCCCc-ccccccCCCcccCCCCc
Q 046899 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEKIGE-KQDYGELKYPIIHPAYS 340 (407)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s 340 (407)
..++.++. ...+|.+|+|-|..++.||+++. |-.|+|||++..-. ..++..|...++.++|-
T Consensus 254 -~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 254 -AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred -ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence 45666665 36799999999999999998874 78899999997544 36788888888888873
No 99
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=178.11 Aligned_cols=276 Identities=20% Similarity=0.334 Sum_probs=190.1
Q ss_pred ecccCCCeeEEEEeecccccCccceEEEEeec------------ccCcccCCcceeeEEEeeCCCceEEEEEeCCC----
Q 046899 32 NHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE------------QFNEEARSPFVKKFKTIIHPGEVNRIRELPQN---- 95 (407)
Q Consensus 32 ~~~~~~p~~s~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---- 95 (407)
....+||-+...|... .+...|+-+++ +++++. ........+.|.-+++.+.|.|+.
T Consensus 40 ~Y~ap~~lya~~Ws~~-----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 40 TYNAPWPLYAMNWSVR-----PDKKFRLAVGSFIEEYNNKVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred EecCCCceeeeccccC-----CCcceeEEEeeeccccCCeeEEEEEccCC--CceeccCCCCCCCCccceEecCCccccC
Confidence 3467888888888632 22223333333 233222 122233335799999999999943
Q ss_pred CeEEEEeeCCCcEEEEeCcCCCCcccc----cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc
Q 046899 96 SKIVATHTDSPDVLIWDVEAQPNRHAV----LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS 171 (407)
Q Consensus 96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (407)
.++|||.+. .+|+|.+...+..... ..+....- ..-+.-+|-+ -.....+.+.+
T Consensus 113 pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~--~aPlTSFDWn------------------e~dp~~igtSS 170 (364)
T KOG0290|consen 113 PDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEF--CAPLTSFDWN------------------EVDPNLIGTSS 170 (364)
T ss_pred cchhhcccC--eEEEEeccCcCCceehhhhhccCccccc--CCcccccccc------------------cCCcceeEeec
Confidence 468888765 8999999854221111 11100000 0011111111 11124566788
Q ss_pred CCCCCCCCCCCCcCc---eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-CcceEEEEe
Q 046899 172 GGNGDKPLESPSIGA---RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADIHCVDW 247 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~ 247 (407)
-|.++.|||++++.. ...+.+|..+|..|+|...+...||+.|.||.||+||+|......+.-.... ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 888999999988643 5667899999999999998878999999999999999998875433332233 568899999
Q ss_pred cCCCCCEEEEEeCCC-cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc---
Q 046899 248 NPHDVNLILTGSADN-SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE--- 323 (407)
Q Consensus 248 ~~~~~~~l~tg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--- 323 (407)
++++.+++||-..|. .|.|.|+|.+ ..++.++++|.+.|+.++|.|.....++|++.|.++-+||+...-.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P-----~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVP-----CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCC-----CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 999999999987764 7999999997 6899999999999999999999887789999999999999987533
Q ss_pred ---ccccccCCCcccCCCCcCc
Q 046899 324 ---KQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 324 ---~~~~~~~~~~v~~~~~s~d 342 (407)
+..+. ..+.|..+.|++-
T Consensus 326 ~dPilay~-a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 326 EDPILAYT-AGGEVNQIQWSSS 346 (364)
T ss_pred CCchhhhh-ccceeeeeeeccc
Confidence 11122 3445666666543
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.2e-24 Score=178.28 Aligned_cols=283 Identities=16% Similarity=0.204 Sum_probs=192.7
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc-
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS- 157 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~- 157 (407)
.|.+.|+++...+..++++++|+.||.|.|||++...... -+..- .+.+ .-..+++...+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---------~~c~--------v~~~h~~~Hky~ 103 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---------HKCI--------VAKQHENGHKYA 103 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh---------eeee--------ccccCCccceee
Confidence 5999999999999999999999999999999998654111 00000 0000 00001111000
Q ss_pred ---cccCCC-CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCCCCc
Q 046899 158 ---TASGGA-NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA--QEFCSVGDDSCLILWDARSGSTPA 231 (407)
Q Consensus 158 ---~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~ 231 (407)
..--++ ...+.+++.|.++++||.++.+....++ -++.|..-+++|-.. .++|+|..|-.|++-|+.++. .
T Consensus 104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--~ 180 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--F 180 (397)
T ss_pred eeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--c
Confidence 000111 1246778899999999999988877775 567888889988531 578888899999999999999 7
Q ss_pred eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC--------CCC-CCceeeecCCCCCEEEEEEcCCCCC
Q 046899 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS--------DGV-GSPIHKFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--------~~~-~~~~~~~~~h~~~v~~v~~~~~~~~ 302 (407)
..++.+|.+.|.++.|+|...-.|++|+.||.|++||+|.-.. ++. ...+.+-.+|.+.|+.++|+.++.+
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~ 260 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY 260 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence 8899999999999999996667789999999999999987420 100 1122234468889999999999999
Q ss_pred EEEEeeCCCeEEEEeCCCCCccccccc--CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 303 VFGSSAEDGILNIWDHEKIGEKQDYGE--LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+ ++++.|..+++|+..+++.-..-.+ ....-+++.+ ..-.+|...++-.-.++++.++.+-
T Consensus 261 l-~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~---------------~~~~~~s~vfv~~p~~~~lall~~~- 323 (397)
T KOG4283|consen 261 L-ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAV---------------HIQSMDSDVFVLFPNDGSLALLNLL- 323 (397)
T ss_pred h-hhccCccceEEeecccCcccccccccccccccccceE---------------EEeecccceEEEEecCCeEEEEEcc-
Confidence 8 5999999999999998766443222 1111122222 1113444444444444666666666
Q ss_pred cccCChHHHHHHHhhcccceeEeec
Q 046899 381 LIYRPEEEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~v~~~~~ 405 (407)
+++.+..+.+|-..|.|.+|
T Consensus 324 -----sgs~ir~l~~h~k~i~c~~~ 343 (397)
T KOG4283|consen 324 -----EGSFVRRLSTHLKRINCAAY 343 (397)
T ss_pred -----CceEEEeeecccceeeEEee
Confidence 56666666666656666554
No 101
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.7e-24 Score=203.20 Aligned_cols=190 Identities=13% Similarity=0.199 Sum_probs=149.3
Q ss_pred ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC------CceeeecccCcceE
Q 046899 170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST------PAVKVEKAHNADIH 243 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~ 243 (407)
|+..+.+++|+......+..+.+|...|.+++|+|+.+++|++|+.|++|++||+.++.. .....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 344556666766666677888999999999999997448999999999999999986431 12345678999999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
+++|+|....+|++++.|+.|++||+++ ++.+..+. |...|.+++|+|+|.. |++++.|+.|+|||+++++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~t------g~~~~~i~-~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN------EKRAFQIN-MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCC------CcEEEEEe-cCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcE
Confidence 9999994334568999999999999998 67777775 5678999999999995 57888999999999999988
Q ss_pred ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee----eEEEeeccc
Q 046899 324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK----VLEIWRMID 380 (407)
Q Consensus 324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~----~i~iwd~~~ 380 (407)
+..+.+|.+.+....+.. ..+.+++.+|++++.|+ +|+|||+..
T Consensus 202 i~tl~gH~g~~~s~~v~~-------------~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWI-------------DGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEecccCCceeEEEEe-------------eeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 888888877543322210 11234577888888775 799999973
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.8e-24 Score=176.80 Aligned_cols=247 Identities=16% Similarity=0.217 Sum_probs=191.9
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
.+....|.+.|++++. ++.++|+|+.|-+|+|||+.+......+..|...+.. ..++..
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsita-----L~F~~~------------- 94 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITA-----LKFYPP------------- 94 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEE-----EEecCC-------------
Confidence 3444569999999996 5679999999999999999999888887777544211 111110
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 235 (407)
.-.+.+++++.||.|.+|+......+..+++|.+.|+.++.+|.+ .+-++.+.|+.+++||+-.++......+
T Consensus 95 ------~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 95 ------LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred ------cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeecc
Confidence 001368899999999999999999999999999999999999999 7888999999999999998884333332
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
......+.|+| .|.+|+.++.+ .|-+|.+.. .....++. ....+.++.|...+. | ++|+.|+.|++
T Consensus 168 ---~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~------A~v~~~i~-~~~r~l~~~~l~~~~-L-~vG~d~~~i~~ 233 (362)
T KOG0294|consen 168 ---KNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDN------ASVFREIE-NPKRILCATFLDGSE-L-LVGGDNEWISL 233 (362)
T ss_pred ---CCcceeeEEcC-CCCEEEEEecc-EEEEEeccc------HhHhhhhh-ccccceeeeecCCce-E-EEecCCceEEE
Confidence 23334599999 78888877755 588999987 44444444 235688888875554 5 59999999999
Q ss_pred EeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 316 WDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 316 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
||......+..+.+|...|-++.+ .....+.+|++.|.||.|+|||+..
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~----------------~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIAS----------------YTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eccCCCccceeeecchhheeeeEE----------------EecCCceEEEEeccCceEEEEEccc
Confidence 999998888889999988777654 1112256899999999999999973
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.3e-25 Score=198.45 Aligned_cols=317 Identities=17% Similarity=0.201 Sum_probs=230.8
Q ss_pred cccccCccceEEEEeecccCcccCCccee-eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC--CCccccc
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVK-KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ--PNRHAVL 123 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~--~~~~~~~ 123 (407)
.+.|++.|+.+++|..+ .....|... ..+.-.|.+-|+.+.... +++.|++++.|-+|++|+.... -+...+.
T Consensus 39 yLfTgGRDg~i~~W~~~---~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVT---QDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred eEEecCCCceEEEeccc---cccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 48899999999999443 333322222 333336999999999776 8889999999999999999887 4666666
Q ss_pred CcCCCCCCC---------------CCcEEEEecccccc------------ccc-cCCCCCcccccCCCCCccccccCCCC
Q 046899 124 GAADSHPDL---------------DQSVVLWSIQDHVS------------ALA-AEPGSAKSTASGGANSKNASKSGGNG 175 (407)
Q Consensus 124 ~~~~~~~~~---------------d~~i~~w~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (407)
.|.+.+.++ |+.|.+||++.+.. .+. ++..++...+.......+++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 666555443 99999999997622 111 33344555666666678899999999
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI 255 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 255 (407)
+++||..+++.+..+++|+..|.++..+++| ..+++++.||+|++||++..+ ++.++..|...|+++..+| +-..+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr--Cl~T~~vH~e~VWaL~~~~-sf~~v 270 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR--CLATYIVHKEGVWALQSSP-SFTHV 270 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc--eeeeEEeccCceEEEeeCC-CcceE
Confidence 9999999999999999999999999999999 889999999999999999888 8899999999999999999 89999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC-----
Q 046899 256 LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL----- 330 (407)
Q Consensus 256 ~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~----- 330 (407)
++|+.||.|..=|++++. +....++ .+.+|..+..+.+...+- ++..|+.|+-|-.+..-.+......
T Consensus 271 YsG~rd~~i~~Tdl~n~~-----~~tlick-~daPv~~l~~~~~~~~~W-vtTtds~I~rW~~~~~~~l~~s~~~~~~~T 343 (735)
T KOG0308|consen 271 YSGGRDGNIYRTDLRNPA-----KSTLICK-EDAPVLKLHLHEHDNSVW-VTTTDSSIKRWKLEPDIALSVSGDLDFFST 343 (735)
T ss_pred EecCCCCcEEecccCCch-----hheEeec-CCCchhhhhhccccCCce-eeeccccceecCCccccccccCCCCCcccc
Confidence 999999999999999842 3333333 567888888886555554 5677999999987754333222211
Q ss_pred --CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 331 --KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 331 --~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
..++......|+. -++-|.--......+....|++=-..|.+.+||+-
T Consensus 344 ~~~~~~~~~~~tp~~-vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 344 DSNNHSCDLTNTPDS-VIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred cCCCccccccCCCce-eccCchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 1111122222321 00000000001122234567788888999999996
No 104
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.7e-26 Score=188.77 Aligned_cols=179 Identities=18% Similarity=0.382 Sum_probs=158.8
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
+....+.|..|+|+| ++|++|+-||.|.+||.-+++.. ....+.-+..+|.|++|+. |..++|+|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEE
Confidence 455678899999999 89999999999999999888621 1223445778999999999 999999999999999
Q ss_pred EEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcch
Q 046899 266 MFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDML 344 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 344 (407)
+|.+++ +.+++.|. +|...|+++.|+.|+.+++ +++.|.++|+--+++++.+..+.+|...|+.+.|++|
T Consensus 289 vWri~t------G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d-- 359 (508)
T KOG0275|consen 289 VWRIET------GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD-- 359 (508)
T ss_pred EEEEec------chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCC--
Confidence 999999 99999997 7999999999999999886 9999999999999999999999999999999999998
Q ss_pred hccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhc--ccceeEe
Q 046899 345 DIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKF--KSHIFGC 403 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~~ 403 (407)
+..|++++.||+|+||+.. +.+|+.+++.- ...|++|
T Consensus 360 ----------------G~~iisaSsDgtvkvW~~K------tteC~~Tfk~~~~d~~vnsv 398 (508)
T KOG0275|consen 360 ----------------GHHIISASSDGTVKVWHGK------TTECLSTFKPLGTDYPVNSV 398 (508)
T ss_pred ----------------CCeEEEecCCccEEEecCc------chhhhhhccCCCCcccceeE
Confidence 8899999999999999999 89999998743 3344443
No 105
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.7e-26 Score=208.46 Aligned_cols=202 Identities=19% Similarity=0.280 Sum_probs=177.9
Q ss_pred cCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899 171 SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250 (407)
Q Consensus 171 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~ 250 (407)
+.+-.+.+|.+.....+..+.+|+.+|.++.|++.. .++++|+.+|+|++||+.... .+.++.+|...+.++.|+|
T Consensus 47 g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--~vrtLtgh~~~~~sv~f~P- 122 (825)
T KOG0267|consen 47 GEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--IVRTLTGHLLNITSVDFHP- 122 (825)
T ss_pred CCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--hhhhhhccccCcceeeecc-
Confidence 333344444444444555678999999999999988 899999999999999999888 7889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL 330 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 330 (407)
-+.++|.|+.|+.+++||.+. ..+.+.+.+|...|..++|+|+|+++ ++|++|.++++||+..++....|..|
T Consensus 123 ~~~~~a~gStdtd~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~v-~~g~ed~tvki~d~~agk~~~ef~~~ 195 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRWV-ASGGEDNTVKIWDLTAGKLSKEFKSH 195 (825)
T ss_pred ceEEeccccccccceehhhhc------cCceeeecCCcceeEEEeecCCCcee-eccCCcceeeeecccccccccccccc
Confidence 788999999999999999998 78999999999999999999999976 79999999999999999999999999
Q ss_pred CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 331 KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 331 ~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
...+..+.|.|. .-.+++|+.|.+|++||+. +.+.+....+....|.+++|++
T Consensus 196 e~~v~sle~hp~------------------e~Lla~Gs~d~tv~f~dle------tfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 196 EGKVQSLEFHPL------------------EVLLAPGSSDRTVRFWDLE------TFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred cccccccccCch------------------hhhhccCCCCceeeeeccc------eeEEeeccCCccCCceeeeecC
Confidence 999999888664 6778899999999999998 7788888888888999999874
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3e-24 Score=176.44 Aligned_cols=260 Identities=17% Similarity=0.184 Sum_probs=192.9
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC-CCcc-cccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ-PNRH-AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~-~~~~-~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
.-.+.|.+|+|+|+...+++.|+.||+||+|+++.. .... ....+... +...
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~P--------------------------vL~v 78 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGP--------------------------VLDV 78 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCC--------------------------eEEE
Confidence 356789999999988889999999999999999863 2221 11112111 1111
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA-QEFCSVGDDSCLILWDARSGSTPAVKVEKA 237 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 237 (407)
......+..++++.|+.+++||+.+++ +..+..|.++|.++.|-+... ..|++||.|.+|+.||+|+.. .+..+ .
T Consensus 79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~t~-~ 154 (347)
T KOG0647|consen 79 CWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVATL-Q 154 (347)
T ss_pred EEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC--eeeee-e
Confidence 122223557789999999999999995 456668999999999987551 379999999999999999877 34443 4
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC----CCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
..+.+++++.- ..+++.+..+..|.+|+++++. .+++. -+-.++||+..++... +|.|+-.|.+
T Consensus 155 LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~--------te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv 222 (347)
T KOG0647|consen 155 LPERVYAADVL---YPMAVVATAERHIAVYNLENPP--------TEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRV 222 (347)
T ss_pred ccceeeehhcc---CceeEEEecCCcEEEEEcCCCc--------chhhhhcCcccceeeEEEEEecCCc-eEeeeecceE
Confidence 57778888763 4688888999999999998732 12222 2346899999988874 4799999999
Q ss_pred EEEeCCCCCcc--cccccCCC---------cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc
Q 046899 314 NIWDHEKIGEK--QDYGELKY---------PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI 382 (407)
Q Consensus 314 ~vwd~~~~~~~--~~~~~~~~---------~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~ 382 (407)
.+-.+..+... -+|..|+. +|.+++|.|. .+.+++.+.||++.+||-.
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~------------------hgtlvTaGsDGtf~FWDkd--- 281 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV------------------HGTLVTAGSDGTFSFWDKD--- 281 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc------------------cceEEEecCCceEEEecch---
Confidence 99999876332 33444442 2444455443 5678888999999999998
Q ss_pred cCChHHHHHHHhhcccceeEeecc
Q 046899 383 YRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 383 ~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
....++..+.|...|+|.+|+
T Consensus 282 ---ar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 282 ---ARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred ---hhhhhhccCcCCCccceeEec
Confidence 788999999999999999986
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.2e-24 Score=193.46 Aligned_cols=261 Identities=15% Similarity=0.183 Sum_probs=202.7
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEE-EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNR-IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA 126 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 126 (407)
+.+++.|++.++|.-. ...........+|.+-|.. ++|.+.++-.|++|+.|++|.+|..........+.+|.
T Consensus 28 i~s~sRd~t~~vw~~~------~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~ 101 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKK------GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK 101 (745)
T ss_pred EeecCCCCceeeeecc------CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc
Confidence 6788889999999221 1222223344468888888 88887566679999999999999999999999998886
Q ss_pred CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC
Q 046899 127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206 (407)
Q Consensus 127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 206 (407)
..+.++ + .+... .+++++-|.+.++|... ++...+.+|+..|.+++.-|++
T Consensus 102 snVC~l-------s-------------------~~~~~-~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 102 SNVCSL-------S-------------------IGEDG-TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN 152 (745)
T ss_pred cceeee-------e-------------------cCCcC-ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC
Confidence 654321 1 11111 25778888899999654 4556689999999999999987
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899 207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286 (407)
Q Consensus 207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 286 (407)
.++||+.|.+|++|.- ++ ..+++.+|.+.|+.+++-+ + ..|++++.||.|+.|++. ++.+.++.+
T Consensus 153 --~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~-------ge~l~~~~g 217 (745)
T KOG0301|consen 153 --TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLD-------GEVLLEMHG 217 (745)
T ss_pred --cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEec-C-CCeEeecCCceEEEEecc-------Cceeeeeec
Confidence 7999999999999986 34 5788899999999999987 3 568899999999999994 799999999
Q ss_pred CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899 287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC 366 (407)
Q Consensus 287 h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~ 366 (407)
|+.-|.++....++. +++|++.|+++++|+.. .+.+.+.-....++++.+ + .++.|++
T Consensus 218 htn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~---L----------------~NgDIvv 275 (745)
T KOG0301|consen 218 HTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV---L----------------LNGDIVV 275 (745)
T ss_pred cceEEEEEEecCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEE---e----------------eCCCEEE
Confidence 999999999666666 45799999999999988 444554443444444443 1 1567999
Q ss_pred EEEeeeEEEeeccc
Q 046899 367 LTMVKVLEIWRMID 380 (407)
Q Consensus 367 ~~~d~~i~iwd~~~ 380 (407)
|+.||.||||...+
T Consensus 276 g~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 276 GGSDGRVRVFTVDK 289 (745)
T ss_pred eccCceEEEEEecc
Confidence 99999999998864
No 108
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=177.23 Aligned_cols=248 Identities=20% Similarity=0.330 Sum_probs=182.0
Q ss_pred eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC-------cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccc
Q 046899 74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP-------DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS 146 (407)
Q Consensus 74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~ 146 (407)
+....+..|.++|+.|+-+|.+.++|+|+..+- .+.||.+.......
T Consensus 54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-------------------------- 107 (370)
T KOG1007|consen 54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-------------------------- 107 (370)
T ss_pred hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--------------------------
Confidence 334445568899999999999999999986531 14455544321110
Q ss_pred ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899 147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR 225 (407)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 225 (407)
+..+.+++..+. .+-+.|.|+.|.|++ ..+++-. |..|.+|++.
T Consensus 108 ---------------------------------~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ 152 (370)
T KOG1007|consen 108 ---------------------------------NSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLD 152 (370)
T ss_pred ---------------------------------ccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcc
Confidence 011223344443 355689999999988 5666654 8999999998
Q ss_pred CCCCCceee-----ecccCcceEEEEecC-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcC
Q 046899 226 SGSTPAVKV-----EKAHNADIHCVDWNP-HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSP 298 (407)
Q Consensus 226 ~~~~~~~~~-----~~~~~~~v~~l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~ 298 (407)
++... ... ..++....++-+|+| .+++.+++.+ |+++..||+|+ ..+...+. +|...|.++.|.|
T Consensus 153 ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT------~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 153 ESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRT------MKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred cCcch-heeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccc------hhhhcchhhhhcceeeeccCCC
Confidence 87631 111 123456678889999 6788887755 89999999998 55665554 5888999999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCCCc-ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899 299 DKSSVFGSSAEDGILNIWDHEKIGE-KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR 377 (407)
Q Consensus 299 ~~~~ll~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd 377 (407)
+..++||||+.||.|++||+++.+. ++++++|...|+++.|+|- |...|++|+.|..|.+|-
T Consensus 225 nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~-----------------hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 225 NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE-----------------HDQLILSGGSDSAVNLSC 287 (370)
T ss_pred CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc-----------------cceEEEecCCCceeEEEe
Confidence 9999999999999999999997655 5788999999999999886 588899999999999996
Q ss_pred ccccc---------------cCChHH--------HHHHHhhcccceeEeeccC
Q 046899 378 MIDLI---------------YRPEEE--------VLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 378 ~~~~~---------------~~~~~~--------~~~~~~~h~~~v~~~~~s~ 407 (407)
..... .....+ .++++..|.+.|++++||.
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence 53211 111111 2457889999999999984
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1e-23 Score=194.67 Aligned_cols=181 Identities=18% Similarity=0.234 Sum_probs=157.4
Q ss_pred cccccCCCCCCCCCCCCcCceeeE---eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899 167 NASKSGGNGDKPLESPSIGARGKY---LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH 243 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 243 (407)
.+.|.+.|.|.+++++++-....+ ..|.++|+.++....+ +.+++++.+|.+++||+.+.. ....+ .-...+.
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~--l~~~l-~l~~~~~ 538 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKV--LKKSL-RLGSSIT 538 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcc--eeeee-ccCCCcc
Confidence 455888999999999999988888 5799999999998888 789999999999999998776 33333 3456788
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
++..+. ....++++..|-.|+++|+.+ .+.++.|.+|.+.|++++|||||++| ++++.|++||+||+.++..
T Consensus 539 ~iv~hr-~s~l~a~~~ddf~I~vvD~~t------~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 539 GIVYHR-VSDLLAIALDDFSIRVVDVVT------RKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred eeeeee-hhhhhhhhcCceeEEEEEchh------hhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEeccCcce
Confidence 888888 788999999999999999999 88999999999999999999999987 5999999999999999776
Q ss_pred ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee-eEEEeec
Q 046899 324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK-VLEIWRM 378 (407)
Q Consensus 324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~i~iwd~ 378 (407)
+-.+ .-+.+++.+.|||+ ++++++...|. .|++|-=
T Consensus 611 ID~~-~vd~~~~sls~SPn------------------gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 611 IDGL-LVDSPCTSLSFSPN------------------GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eeeE-ecCCcceeeEECCC------------------CCEEEEEEecCceEEEEEc
Confidence 6544 34678889999998 88999998884 8999953
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.7e-25 Score=198.02 Aligned_cols=211 Identities=18% Similarity=0.287 Sum_probs=182.0
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
......++.|..+|.+.|||....+.+..+.+ |...|.+++|+. ..+.+|+.|+.|..+|++..+.. ...+.+|.
T Consensus 226 s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~ 301 (484)
T KOG0305|consen 226 SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHV-VSTLQGHR 301 (484)
T ss_pred CCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhh-hhhhhccc
Confidence 33345689999999999999999999999998 999999999993 67999999999999999998742 22588999
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee--CCCeEEEEe
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGILNIWD 317 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~--~d~~i~vwd 317 (407)
..|..+.|++ +++++|+|+.|+.+.|||... ..++..+..|.+.|..++|+|-...|||+|+ .|+.|++||
T Consensus 302 qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 302 QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred ceeeeeEECC-CCCeeccCCCccceEeccCCC------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 9999999999 999999999999999999977 7899999999999999999999888999986 599999999
Q ss_pred CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee--EEEeeeEEEeeccccccCChHHHHHHHhh
Q 046899 318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC--LTMVKVLEIWRMIDLIYRPEEEVLAELDK 395 (407)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 395 (407)
+.++..+..... ...|..+.|++. ...|++ |..+..|.||+.. +-.++..+.|
T Consensus 375 ~~~g~~i~~vdt-gsQVcsL~Wsk~------------------~kEi~sthG~s~n~i~lw~~p------s~~~~~~l~g 429 (484)
T KOG0305|consen 375 TNTGARIDSVDT-GSQVCSLIWSKK------------------YKELLSTHGYSENQITLWKYP------SMKLVAELLG 429 (484)
T ss_pred cCCCcEeccccc-CCceeeEEEcCC------------------CCEEEEecCCCCCcEEEEecc------ccceeeeecC
Confidence 999888777665 445777777766 333433 2334499999998 6788899999
Q ss_pred cccceeEeeccC
Q 046899 396 FKSHIFGCDKSC 407 (407)
Q Consensus 396 h~~~v~~~~~s~ 407 (407)
|...|..+++||
T Consensus 430 H~~RVl~la~SP 441 (484)
T KOG0305|consen 430 HTSRVLYLALSP 441 (484)
T ss_pred CcceeEEEEECC
Confidence 999999999986
No 111
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-24 Score=188.12 Aligned_cols=267 Identities=15% Similarity=0.168 Sum_probs=209.0
Q ss_pred cEEEEeCcCCCCcccccCcCCCCCCC-----------------CCcEEEEeccccccccc---cC-CCCCcccccCCCCC
Q 046899 107 DVLIWDVEAQPNRHAVLGAADSHPDL-----------------DQSVVLWSIQDHVSALA---AE-PGSAKSTASGGANS 165 (407)
Q Consensus 107 ~i~vwd~~~~~~~~~~~~~~~~~~~~-----------------d~~i~~w~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 165 (407)
.+++||+...+....+..+....... |..+.+|.-......+. .. .+...++......-
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~ 92 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSL 92 (673)
T ss_pred ceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcce
Confidence 79999998876665555443332211 77778886655411111 11 11122333344446
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec-ccCcceEE
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-AHNADIHC 244 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~ 244 (407)
++++++..+.++|||++...+.+.+++|+..|+++.++-.+ .++|+++..|-|.|..+.++.. ...+. +....|.-
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~--tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQK--TTTFTIDSGQSVRL 169 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcc--ccceecCCCCeEEE
Confidence 78889999999999999877888899999999999999888 7999999999999999998873 33333 23456678
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
+.|+|....+|.+++++|.|.+||+.. ..+...+ +.|..+...|+|+|....||++.+.|..|.+||.+....
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g------~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQG------MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccC------CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence 999996667788999999999999998 5555544 569999999999999999999999999999999997444
Q ss_pred ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEe
Q 046899 324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403 (407)
Q Consensus 324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~ 403 (407)
...+ ..+.|.+.++|+++ +.++++|+..|.|..||++. ..+++..+..|+..|++|
T Consensus 244 ~~~l-~y~~Plstvaf~~~------------------G~~L~aG~s~G~~i~YD~R~-----~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 244 TDRL-TYSHPLSTVAFSEC------------------GTYLCAGNSKGELIAYDMRS-----TKAPVAVRSAHDASVTRV 299 (673)
T ss_pred ccee-eecCCcceeeecCC------------------ceEEEeecCCceEEEEeccc-----CCCCceEeeecccceeEE
Confidence 3333 34678889999888 89999999999999999974 778999999999999999
Q ss_pred ecc
Q 046899 404 DKS 406 (407)
Q Consensus 404 ~~s 406 (407)
+|-
T Consensus 300 afq 302 (673)
T KOG4378|consen 300 AFQ 302 (673)
T ss_pred Eee
Confidence 994
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=3.7e-24 Score=187.59 Aligned_cols=311 Identities=13% Similarity=0.165 Sum_probs=211.9
Q ss_pred hccCceEEEeeeecccCCCeeEEEEee---cccccCccceEEEEeecccC-cccCCcceeeEEEeeCCCceEEEEEeCCC
Q 046899 20 KSLVPVLYDWLANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFN-EEARSPFVKKFKTIIHPGEVNRIRELPQN 95 (407)
Q Consensus 20 ~~~~~~~y~~l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 95 (407)
.+.+|+--+..+.|... -......-| .+++|++|..+++| +|. .+...+.+..+. ......|+++.|++ .
T Consensus 152 ~~~IP~shEi~l~hgtk-~Vsal~~Dp~GaR~~sGs~Dy~v~~w---Df~gMdas~~~fr~l~-P~E~h~i~sl~ys~-T 225 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTK-IVSALAVDPSGARFVSGSLDYTVKFW---DFQGMDASMRSFRQLQ-PCETHQINSLQYSV-T 225 (641)
T ss_pred hhcCCccceEeccCCce-EEEEeeecCCCceeeeccccceEEEE---ecccccccchhhhccC-cccccccceeeecC-C
Confidence 45577665544444432 111223333 58899999999999 443 222222222221 12446899999999 6
Q ss_pred CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC----CCcccccc
Q 046899 96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA----NSKNASKS 171 (407)
Q Consensus 96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 171 (407)
++.|++.+.....+|+|-...+......+-.+ |-|+.. ..+.++.+..|.+ ...+++.+
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQY----------I~Dm~n-------TKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQY----------IRDMYN-------TKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchh----------hhhhhc-------cCCceeeeeccccccCcccceEEec
Confidence 66666666667999999876554444333211 111111 1111111112222 24578899
Q ss_pred CCCCCCCCCCCCcCceee-Ee-----ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-CCceeeecccCc--ce
Q 046899 172 GGNGDKPLESPSIGARGK-YL-----GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS-TPAVKVEKAHNA--DI 242 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~~~~-~~-----~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~--~v 242 (407)
.||++++||.+..+.... ++ +..-+++.++|+|++ .++|+|..||.|.+||.+... .+....-.+|.. .|
T Consensus 289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 999999999976554333 32 123478999999999 789999999999999986544 234455567876 99
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--CCCEEEEEEcCCCCCEEEEeeC------CCeEE
Q 046899 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--SAAVLCVQWSPDKSSVFGSSAE------DGILN 314 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~ll~s~~~------d~~i~ 314 (407)
+||.|++ +|++|++-+.|+++++||+|.+ .+++.+..+- .-+-+..+|||+.+. ++||.. .|++.
T Consensus 368 tsi~FS~-dg~~LlSRg~D~tLKvWDLrq~-----kkpL~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 368 TSISFSY-DGNYLLSRGFDDTLKVWDLRQF-----KKPLNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSAPNGMTAGTLF 440 (641)
T ss_pred eEEEecc-ccchhhhccCCCceeeeecccc-----ccchhhhcCCCccCCCCccccCCCceE-EEecccccCCCCCceEE
Confidence 9999999 9999999999999999999996 3677666552 235678899999994 458753 57899
Q ss_pred EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe-ecc
Q 046899 315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW-RMI 379 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw-d~~ 379 (407)
+||..+...+..+......|..+.|.|. -+.|..|+.||+++|| |-+
T Consensus 441 f~d~~t~d~v~ki~i~~aSvv~~~Whpk------------------LNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 441 FFDRMTLDTVYKIDISTASVVRCLWHPK------------------LNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred EEeccceeeEEEecCCCceEEEEeecch------------------hhheeeecCCCceEEEECcc
Confidence 9999999998888877777777777776 5678899999999886 443
No 113
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=5.7e-24 Score=190.92 Aligned_cols=301 Identities=17% Similarity=0.240 Sum_probs=210.4
Q ss_pred cchhhhhhhhccCc-eEEEeeeecccCCCeeEEEEee------cccccCccceEEEEeecccCcccCCcceeeEEEeeCC
Q 046899 11 SVDDRYTQWKSLVP-VLYDWLANHNLVWPSLSCRWGP------QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHP 83 (407)
Q Consensus 11 ~~~~~~~~w~~~~~-~~y~~l~~~~~~~p~~s~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~ 83 (407)
.+-+..-.|.-++| .-| -.+.++-|.+.+.|.+ .++.+..++.+.++......... .......-+.|.
T Consensus 26 ~~~~~~~s~~gi~~~~s~---~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~--ee~~lk~~~aH~ 100 (720)
T KOG0321|consen 26 DIGKALSSCRGIAPITSY---ANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL--EERQLKKPLAHK 100 (720)
T ss_pred hHhhhhhhhccccccccc---ccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcch--hhhhhccccccc
Confidence 33445556666666 333 2334444556666644 36677778888777444221110 111123445799
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
+.|..+.|.| ....|++++.|.++++||+.+..+...
T Consensus 101 nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~------------------------------------------ 137 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG------------------------------------------ 137 (720)
T ss_pred ceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc------------------------------------------
Confidence 9999999999 888999999999999999987643221
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--------------
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-------------- 229 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------- 229 (407)
..+.+|+..|.+++|.|.++..|++|+.||.|.|||++-...
T Consensus 138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 235689999999999999999999999999999999985420
Q ss_pred --------C---ceeeecccCcc----eEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecC--C---C
Q 046899 230 --------P---AVKVEKAHNAD----IHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEG--H---S 288 (407)
Q Consensus 230 --------~---~~~~~~~~~~~----v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~--h---~ 288 (407)
+ ......++... |+.+.| . |...||+++. |+.|+|||++........++...... | .
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs 271 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS 271 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence 0 00111223333 444444 4 7788998888 99999999998765554555544433 3 3
Q ss_pred CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc--cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899 289 AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK--QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC 366 (407)
Q Consensus 289 ~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~ 366 (407)
-.+.++.....|.+|+|+|. |+.|.+|++.....- ..+.++.. ..++-...+.+|+..+++
T Consensus 272 ~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~----------------~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLN----------------SSFYVKSELSPDDCSLLS 334 (720)
T ss_pred eeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCccc----------------ceeeeeeecCCCCceEec
Confidence 36888888888999998877 999999999875432 22222111 112223566778999999
Q ss_pred EEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 367 LTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 367 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
|+.|....+|.+.+ -.+....+.||.-.|++|+|+|
T Consensus 335 gSsd~~ayiw~vs~-----~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSS-----PEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cCCCcceeeeeecC-----ccCChhhhhCcceEEEEEeecc
Confidence 99999999999984 5677889999999999999986
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=6.9e-25 Score=198.52 Aligned_cols=257 Identities=17% Similarity=0.219 Sum_probs=203.8
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
.+.+|...|..+++.+ +..+++++.||++++|+-...+.+. .+.++...++. ++.+..
T Consensus 9 ~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~---~i~y~e--------------- 68 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIAN---SICYAE--------------- 68 (745)
T ss_pred EeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeec---cceecc---------------
Confidence 3448999999998665 4579999999999999986655433 22333332211 011110
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 235 (407)
...-.++.|+.|..+.+|......++..+++|+..|.|+....++ . +++||.|.++++|-..+ +...+
T Consensus 69 ------~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~----l~~~l 136 (745)
T KOG0301|consen 69 ------SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE----LVYSL 136 (745)
T ss_pred ------ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchh----hhccc
Confidence 111236778899999999999999999999999999999988877 4 99999999999998754 44568
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
.+|+..|+++..-| +. .++||+.|.+|++|.- ++.+++|.+|.+.|+.+++-+++. + +|++.||.|++
T Consensus 137 ~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--------~~~l~tf~gHtD~VRgL~vl~~~~-f-lScsNDg~Ir~ 204 (745)
T KOG0301|consen 137 QGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--------GTLLKTFSGHTDCVRGLAVLDDSH-F-LSCSNDGSIRL 204 (745)
T ss_pred CCcchheeeeeecC-CC-cEEeccCcceeeeccC--------CchhhhhccchhheeeeEEecCCC-e-EeecCCceEEE
Confidence 89999999999988 54 8899999999999976 468899999999999999999877 4 59999999999
Q ss_pred EeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhh
Q 046899 316 WDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK 395 (407)
Q Consensus 316 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 395 (407)
|++ +++.+.++.+|..-++++....+ ...|++.+.|++++||+. ++|++.+.-
T Consensus 205 w~~-~ge~l~~~~ghtn~vYsis~~~~------------------~~~Ivs~gEDrtlriW~~--------~e~~q~I~l 257 (745)
T KOG0301|consen 205 WDL-DGEVLLEMHGHTNFVYSISMALS------------------DGLIVSTGEDRTLRIWKK--------DECVQVITL 257 (745)
T ss_pred Eec-cCceeeeeeccceEEEEEEecCC------------------CCeEEEecCCceEEEeec--------CceEEEEec
Confidence 999 67899999999998777765444 678999999999999996 367777765
Q ss_pred cccceeEeec
Q 046899 396 FKSHIFGCDK 405 (407)
Q Consensus 396 h~~~v~~~~~ 405 (407)
..-.|+++.+
T Consensus 258 PttsiWsa~~ 267 (745)
T KOG0301|consen 258 PTTSIWSAKV 267 (745)
T ss_pred CccceEEEEE
Confidence 5556776654
No 115
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2.2e-24 Score=204.79 Aligned_cols=236 Identities=20% Similarity=0.321 Sum_probs=191.4
Q ss_pred CCCceEEEEEeCCCCeEEEEee--CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHT--DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA 159 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
++..|.++..+| ++..+|||+ .||.++||+...--....
T Consensus 12 ~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~-------------------------------------- 52 (942)
T KOG0973|consen 12 NEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKE-------------------------------------- 52 (942)
T ss_pred CCeeEEEEEecC-CceeEecCCccccccceeeccccccchhh--------------------------------------
Confidence 446689999999 999999999 999999999864210000
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-C-----------
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-G----------- 227 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~----------- 227 (407)
.++..-.+.+..+..|.+.|+|+.|+|+| .+||+|++|+.|.+|+... +
T Consensus 53 ------------------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~ 113 (942)
T KOG0973|consen 53 ------------------EKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGA 113 (942)
T ss_pred ------------------hhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccc
Confidence 00111224566777899999999999999 8999999999999999873 0
Q ss_pred ----CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCE
Q 046899 228 ----STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV 303 (407)
Q Consensus 228 ----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 303 (407)
+......+.+|...|..++|+| ++.+|++++.|++|.+||.++ ++.+..+++|.+.|-.+.|.|-|+|+
T Consensus 114 ~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~t------F~~~~vl~~H~s~VKGvs~DP~Gky~ 186 (942)
T KOG0973|consen 114 KNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKT------FELLKVLRGHQSLVKGVSWDPIGKYF 186 (942)
T ss_pred cccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccc------ceeeeeeecccccccceEECCccCee
Confidence 0124567789999999999999 999999999999999999999 89999999999999999999999986
Q ss_pred EEEeeCCCeEEEEeCCCCCcccccccC------CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe-e---eE
Q 046899 304 FGSSAEDGILNIWDHEKIGEKQDYGEL------KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV-K---VL 373 (407)
Q Consensus 304 l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~---~i 373 (407)
||-+.|++|++|++...+....+.++ ..-.+.+.|||| +.+|++...- + ++
T Consensus 187 -ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD------------------G~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 187 -ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD------------------GHHLASPNAVNGGKSTI 247 (942)
T ss_pred -eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC------------------cCeecchhhccCCccee
Confidence 89999999999998876666555432 334677899999 7777744332 2 78
Q ss_pred EEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 374 EIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.|-+-. ++..-..|-||.++|.+++|+|
T Consensus 248 ~IieR~------tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 248 AIIERG------TWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred EEEecC------CceeeeeeecCCCceEEEEeCh
Confidence 887766 6777789999999999999986
No 116
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=181.87 Aligned_cols=255 Identities=20% Similarity=0.295 Sum_probs=190.7
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA 126 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 126 (407)
.+++|+.||.++||..+ .. ........|.|.|+.|++.. ..++|++.|.+|+.|.+... ...++.+..
T Consensus 81 ~~aSGs~DG~VkiWnls-----qR---~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~-p~~tilg~s 148 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLS-----QR---ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP-PLHTILGKS 148 (433)
T ss_pred hhhccccCceEEEEehh-----hh---hhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC-cceeeeccc
Confidence 48899999999999221 11 11233347999999999764 56889999999999998763 333322211
Q ss_pred C------------CCCCCCCcEEEEecccc--ccccccCCCCCcccccCCC-CCccccccCCCCCCCCCCCCcCceeeEe
Q 046899 127 D------------SHPDLDQSVVLWSIQDH--VSALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESPSIGARGKYL 191 (407)
Q Consensus 127 ~------------~~~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 191 (407)
. +..+ ...|.|||.+.. ...+....+.+........ .+.++++++|+.|.++|+....+++.+.
T Consensus 149 ~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi 227 (433)
T KOG0268|consen 149 VYLGIDHHRKNSVFATC-GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI 227 (433)
T ss_pred ccccccccccccccccc-CceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee
Confidence 0 0000 456999998654 4444444444444444444 3567778899999999999999887765
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
-...-+.|+|+|.. ..|++|++|..+..||++..+.| .....+|.+.|..++|+| .|+.|++|+.|.+|+||..+.
T Consensus 228 -~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p-~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 228 -LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRP-LNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred -eeccccceecCccc-cceeeccccccceehhhhhhccc-chhhcccceeEEEeccCC-CcchhccccccceEEEeecCC
Confidence 34566889999966 78999999999999999988864 667789999999999999 899999999999999999987
Q ss_pred CCCCCCCCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899 272 LTSDGVGSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~ 325 (407)
+.....+.. --..|.|+.|+-|.+|++ +||.|+.|++|-....+.+.
T Consensus 304 ------~~SRdiYhtkRMq~V~~Vk~S~Dskyi~-SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 304 ------GHSRDIYHTKRMQHVFCVKYSMDSKYII-SGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ------CcchhhhhHhhhheeeEEEEeccccEEE-ecCCCcceeeeecchhhhcC
Confidence 333322211 124699999999999986 99999999999887655443
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=5.6e-23 Score=169.03 Aligned_cols=259 Identities=13% Similarity=0.156 Sum_probs=194.3
Q ss_pred EEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC
Q 046899 42 CRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP 117 (407)
Q Consensus 42 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 117 (407)
+.|.| .++.+++|+++|+| ++... ..........|.++|.+++|+. +|..+++|+.|+++++||+.+++
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~w---evq~~---g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIW---EVQNS---GQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred eEeccccCceEEecccCCceEEE---EEecC---CcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCC
Confidence 36777 35689999999999 33322 1122233346999999999998 88999999999999999999984
Q ss_pred CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCE
Q 046899 118 NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTV 197 (407)
Q Consensus 118 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v 197 (407)
...+..|...+ ++++.. .+.....+++|+-|.+++.||.....++.++. -.+.+
T Consensus 106 -~~~v~~Hd~pv----kt~~wv--------------------~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv 159 (347)
T KOG0647|consen 106 -VSQVAAHDAPV----KTCHWV--------------------PGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV 159 (347)
T ss_pred -eeeeeecccce----eEEEEe--------------------cCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence 33344443331 111111 11223457889999999999999988888875 34567
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899 198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV 277 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~ 277 (407)
+++..-. .+++.+..++.|.+|+++++...........+-.+.||+..+ +....+.|+-+|.+.+..+....
T Consensus 160 Ya~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~---- 231 (347)
T KOG0647|consen 160 YAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPN---- 231 (347)
T ss_pred eehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCC----
Confidence 7776543 478888889999999998775322222233455788999988 77777999999999999988732
Q ss_pred CCceeeecCCCC---------CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 278 GSPIHKFEGHSA---------AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 278 ~~~~~~~~~h~~---------~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.+.-.+|+.|.. .|++|+|+|.... |+|.|.||++.+||-.....+.+.+.+..||++..|+.+
T Consensus 232 ~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt-lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 232 PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT-LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred ccCceeEEEeccCCCCCCceEEecceEeecccce-EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCC
Confidence 255567777763 5889999997774 589999999999999998999999999999999999887
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3e-23 Score=171.21 Aligned_cols=252 Identities=15% Similarity=0.176 Sum_probs=192.2
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC------------CCCCCCCcEEEEeccccccc-c
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD------------SHPDLDQSVVLWSIQDHVSA-L 148 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~------------~~~~~d~~i~~w~~~~~~~~-~ 148 (407)
-.+.|.+|.|+| ..+.|+.++.||++++||+...+....+..... ...++||.|+.+|++++... +
T Consensus 12 P~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 12 PEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceee
Confidence 357899999998 555666777999999999988754443322111 11122999999999987554 4
Q ss_pred ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899 149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS 228 (407)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 228 (407)
..+...+..+........+++|+-|++|++||.........+. ....|.|+.... +.|+.|+.|..|.+||+|+..
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccC---CEEEEeecCceEEEEEccccc
Confidence 4555666666666667789999999999999998755555554 445899988763 678999999999999999987
Q ss_pred CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC---------CEEEEEEcCC
Q 046899 229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA---------AVLCVQWSPD 299 (407)
Q Consensus 229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~---------~v~~v~~~~~ 299 (407)
.+........+-.+.|+++-| ++.-++.++-||.|.+=.+..... .......|+.|.. +|++|+|||-
T Consensus 167 ~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~--~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEE--AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred chhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchH--HhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 544334445567889999999 777788889999988765554211 1345567777743 8999999998
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 300 KSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 300 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
... ||||+.||.|.+||+.+.+.+..+......|..++|+.|
T Consensus 244 ~~t-faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~d 285 (323)
T KOG1036|consen 244 HGT-FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMD 285 (323)
T ss_pred cce-EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccC
Confidence 664 589999999999999999999998888888889999888
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.4e-25 Score=201.29 Aligned_cols=236 Identities=17% Similarity=0.272 Sum_probs=202.8
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
....|...|.++.. ....+.+++|+.|..+-+|.+........+.+|...+.+ .+
T Consensus 23 ~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeS-------l~----------------- 77 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIES-------LT----------------- 77 (825)
T ss_pred hhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchhheeeccCCccee-------ee-----------------
Confidence 33469999999997 448899999999999999999877666666666544211 11
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA 237 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 237 (407)
+......+++|+.+|.|++||+...+.++++.+|...+..+.|+|.+ .++++|+.|+-+++||.+... +...+.+
T Consensus 78 --f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~G--c~~~~~s 152 (825)
T KOG0267|consen 78 --FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKG--CSHTYKS 152 (825)
T ss_pred --cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccC--ceeeecC
Confidence 22222346778899999999999999999999999999999999999 889999999999999999776 7888889
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
|...|.++.|+| +|++++.|+.|..++|||... ++.+.+|..|+..|..+.|+|..- |+++||.|+++++||
T Consensus 153 ~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 153 HTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWD 224 (825)
T ss_pred CcceeEEEeecC-CCceeeccCCcceeeeecccc------cccccccccccccccccccCchhh-hhccCCCCceeeeec
Confidence 999999999999 999999999999999999999 999999999999999999999876 779999999999999
Q ss_pred CCCCCcccccccCCCcccCCCCcCcchhccccce
Q 046899 318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLL 351 (407)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~ 351 (407)
+++.+.+........+|.+..|+++...+.+|..
T Consensus 225 letfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 225 LETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 9999888888888889999999999655555544
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-22 Score=159.92 Aligned_cols=287 Identities=18% Similarity=0.219 Sum_probs=213.3
Q ss_pred CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 70 RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 70 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
..+.++.+..+.....|.+++|+| .|.+.|.|+..++.||--.......+ .+|..... -..+. .. ...
T Consensus 19 ~k~~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r--~~hea~~~--pp~v~-~k------r~k 86 (350)
T KOG0641|consen 19 EKKHFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLR--HAHEAAKQ--PPSVL-CK------RNK 86 (350)
T ss_pred cccceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcc--cccccccC--CCeEE-ee------ecc
Confidence 455667777788889999999999 88899999999999998664322111 11111100 00011 10 011
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCC--CcC---ceeeEeecccCEEEEEECCC---CCcEEEEEeC-CCcEE
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESP--SIG---ARGKYLGHEDTVEDVQFCPS---SAQEFCSVGD-DSCLI 220 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~--~~~---~~~~~~~~~~~v~~l~~~~~---~~~~l~s~~~-dg~i~ 220 (407)
-+.+.+.+.+..+....+++|++|.+|++...+ +.+ .-..+.-|.+.|..++|..+ +..+|++++. |..|.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 223333344444444568889999999885433 322 22456679999999999643 3467887764 78888
Q ss_pred EEEcCCCCCCceeeecccCcceEEEE-ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--C-----CCCEE
Q 046899 221 LWDARSGSTPAVKVEKAHNADIHCVD-WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--H-----SAAVL 292 (407)
Q Consensus 221 iwd~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h-----~~~v~ 292 (407)
+-|...++ ....+.+|.+-|.++- | ++-++++|+.|.+|++||+|. ..++.++.. | ...|.
T Consensus 167 ~tdc~~g~--~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv------~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 167 ITDCGRGQ--GFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRV------NSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred EeecCCCC--cceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeec------cceeeeccCcccCCCcccceeE
Confidence 88988888 6888899999998764 4 568999999999999999998 667776643 2 35799
Q ss_pred EEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899 293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV 372 (407)
Q Consensus 293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 372 (407)
+++..|.|+ ||++|-.|....+||++.++.++.+..|...|.++.|||. ..++++++.|-.
T Consensus 236 av~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~------------------a~yllt~syd~~ 296 (350)
T KOG0641|consen 236 AVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG------------------AHYLLTCSYDMK 296 (350)
T ss_pred EEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC------------------ceEEEEecccce
Confidence 999999999 6689999999999999999999999999999999999997 779999999999
Q ss_pred EEEeeccccccCChHHHHHHH-----hhcccceeEeec
Q 046899 373 LEIWRMIDLIYRPEEEVLAEL-----DKFKSHIFGCDK 405 (407)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~ 405 (407)
|++=|+. |.+.+.+ ..|++.+..+.|
T Consensus 297 ikltdlq-------gdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 297 IKLTDLQ-------GDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred EEEeecc-------cchhhcCceEEEEeccCceEEEEe
Confidence 9999996 5555543 368877766655
No 121
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-21 Score=162.38 Aligned_cols=276 Identities=17% Similarity=0.154 Sum_probs=205.5
Q ss_pred CCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEee-CCCceEEEEEeCCCCeEEEEeeC--CCcEEE
Q 046899 37 WPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTII-HPGEVNRIRELPQNSKIVATHTD--SPDVLI 110 (407)
Q Consensus 37 ~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~tg~~--dg~i~v 110 (407)
-+..+++|.+. +.+.+.|..++||-.. ..+..+.+. ++-.|..++|..++.. ++.++. |.+||.
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~---------~g~~~~ti~skkyG~~~~~Fth~~~~-~i~sStk~d~tIry 84 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSL---------SGKQVKTINSKKYGVDLACFTHHSNT-VIHSSTKEDDTIRY 84 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcC---------CCceeeEeecccccccEEEEecCCce-EEEccCCCCCceEE
Confidence 34556777653 5566777789999222 222333333 4456888888764444 444444 789999
Q ss_pred EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899 111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY 190 (407)
Q Consensus 111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 190 (407)
-++.+.+.++.+.+|...+.. +...+.+..+++++.|+++++||++..++...+
T Consensus 85 Lsl~dNkylRYF~GH~~~V~s--------------------------L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNS--------------------------LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred EEeecCceEEEcCCCCceEEE--------------------------EEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 999999999888888664321 112333456788999999999999988877776
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcceEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADIHCVDWNPHDVNLILTGSADNSIHMF 267 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 267 (407)
..... ..++|.|+| -+||++.....|++||+|.-...+..++. +...+.+.|.|+| +|++|+.+...+.+++.
T Consensus 139 ~~~~~--pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 139 NLSGR--PIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLL 214 (311)
T ss_pred ecCCC--cceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEE
Confidence 54333 457999999 88999988889999999987543344433 3366789999999 99999999999999999
Q ss_pred eCCCCCCCCCCCceeeecCCCCCE---EEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcCcc
Q 046899 268 DRRKLTSDGVGSPIHKFEGHSAAV---LCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSDM 343 (407)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~h~~~v---~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~ 343 (407)
|.-. |..+.++..+...- ....|+|+++++| +|+.||+|.+|+++++..+..+.+ +..++.++.|+|.
T Consensus 215 DAf~------G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~- 286 (311)
T KOG1446|consen 215 DAFD------GTVKSTFSGYPNAGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR- 286 (311)
T ss_pred EccC------CcEeeeEeeccCCCCcceeEEECCCCcEEE-EecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc-
Confidence 9988 88888888765432 5778999999876 999999999999999999998888 6889999999886
Q ss_pred hhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..-.+.++.+-+|=..
T Consensus 287 -------------------~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 287 -------------------YAMFVSASSNLVFWLPD 303 (311)
T ss_pred -------------------eeeeeecCceEEEEecc
Confidence 12234556677788654
No 122
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=4.4e-23 Score=175.38 Aligned_cols=260 Identities=18% Similarity=0.344 Sum_probs=192.9
Q ss_pred EEeeeecccCCCeeEEEEeeccc----ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEe
Q 046899 27 YDWLANHNLVWPSLSCRWGPQLE----QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATH 102 (407)
Q Consensus 27 y~~l~~~~~~~p~~s~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg 102 (407)
|+-+-.....|.+..|.-+|.+. .++..+...+. + +++-.+.+.-... .-||+++|..++|+|.+.+.||+|
T Consensus 25 YddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~Vi--P-l~k~Gr~d~~~P~-v~GHt~~vLDi~w~PfnD~vIASg 100 (472)
T KOG0303|consen 25 YDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVI--P-LVKTGRMDASYPL-VCGHTAPVLDIDWCPFNDCVIASG 100 (472)
T ss_pred hcceeeeeeeccccccccCCceEEEEEecCCCcceeec--c-cccccccCCCCCC-ccCccccccccccCccCCceeecC
Confidence 57777788899999998888532 23333222222 1 1111111111111 128999999999999999999999
Q ss_pred eCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC
Q 046899 103 TDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP 182 (407)
Q Consensus 103 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 182 (407)
+.|.+|.||++..+.....+
T Consensus 101 SeD~~v~vW~IPe~~l~~~l------------------------------------------------------------ 120 (472)
T KOG0303|consen 101 SEDTKVMVWQIPENGLTRDL------------------------------------------------------------ 120 (472)
T ss_pred CCCceEEEEECCCcccccCc------------------------------------------------------------
Confidence 99999999999865433221
Q ss_pred CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899 183 SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN 262 (407)
Q Consensus 183 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg 262 (407)
.+++..+.+|...|.-++|+|.-.+.|++++.|.+|.+||+.++. ...++. |...|++++|+. +|.+|+|.+.|.
T Consensus 121 -tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~-dGs~l~TtckDK 195 (472)
T KOG0303|consen 121 -TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNR-DGSLLCTTCKDK 195 (472)
T ss_pred -ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEecc-CCceeeeecccc
Confidence 146778889999999999999988999999999999999999998 566654 999999999999 999999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeeecCCCC-CEEEEEEcCCCCCEEEEee---CCCeEEEEeCCCCCcccccccC--CCcccC
Q 046899 263 SIHMFDRRKLTSDGVGSPIHKFEGHSA-AVLCVQWSPDKSSVFGSSA---EDGILNIWDHEKIGEKQDYGEL--KYPIIH 336 (407)
Q Consensus 263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~ll~s~~---~d~~i~vwd~~~~~~~~~~~~~--~~~v~~ 336 (407)
.|||||.++ ++.+.+-.+|.+ .-..+.|-.+|. ++.||- .+.++-+||..+.+....+... +..|.-
T Consensus 196 kvRv~dpr~------~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~ 268 (472)
T KOG0303|consen 196 KVRVIDPRR------GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL 268 (472)
T ss_pred eeEEEcCCC------CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEE
Confidence 999999999 899998888875 345566777888 665553 4789999999887766444332 222323
Q ss_pred CCCcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeeccc
Q 046899 337 PAYSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 337 ~~~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~~ 380 (407)
..|.+| .. ..++|-.|+.||.|.+..
T Consensus 269 PFyD~d------------------t~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 269 PFYDPD------------------TSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eeecCC------------------CCEEEEEecCCcceEEEEecC
Confidence 333333 33 344888999999999864
No 123
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=8.6e-23 Score=176.83 Aligned_cols=221 Identities=19% Similarity=0.236 Sum_probs=178.4
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
+|...|.+++.++ ++++||||+.|..|.||+.++.+.+..+.+|...+.++ ++
T Consensus 200 ~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L--------------------------~f 252 (479)
T KOG0299|consen 200 GHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSL--------------------------AF 252 (479)
T ss_pred cccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeee--------------------------ee
Confidence 7999999999999 99999999999999999999999888887776654221 11
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
-.-.+.+.+++.|.++++|+++....+.++.+|...|..|.....+ ..+.+|+.|+++++|++.... ...+.++.+
T Consensus 253 r~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees---qlifrg~~~ 328 (479)
T KOG0299|consen 253 RKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES---QLIFRGGEG 328 (479)
T ss_pred ecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc---eeeeeCCCC
Confidence 1112346678889999999999999999999999999999988877 677777799999999995444 556778898
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-C-----------CCCEEEEEEcCCCCCEEEEee
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-H-----------SAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h-----------~~~v~~v~~~~~~~~ll~s~~ 308 (407)
.+-|++|-. ...|++|+.+|.|.+|++.. .+++.+.+. | ..+|++++..|... |+|+|+
T Consensus 329 sidcv~~In--~~HfvsGSdnG~IaLWs~~K------Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS 399 (479)
T KOG0299|consen 329 SIDCVAFIN--DEHFVSGSDNGSIALWSLLK------KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGS 399 (479)
T ss_pred CeeeEEEec--ccceeeccCCceEEEeeecc------cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecC
Confidence 999999974 57899999999999999998 677776642 2 22899999999888 779999
Q ss_pred CCCeEEEEeCCCCCc----ccccccCCCcccCCCCcCc
Q 046899 309 EDGILNIWDHEKIGE----KQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 309 ~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d 342 (407)
.+|.|++|-+..+-. +..++ ..+.|++++|+.+
T Consensus 400 ~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS 436 (479)
T ss_pred CCCceEEEEecCCccccceeeecc-cccEEEEEEEccC
Confidence 999999999987622 22222 4556777777666
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=176.04 Aligned_cols=289 Identities=13% Similarity=0.184 Sum_probs=219.1
Q ss_pred CeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 38 PSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 38 p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
+..+++|.| .+.+++.|++++|| +.+-. ..+.+. ...--..+|.+.+|.|++...+++++.......||+.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrif---qvDGk-~N~~lq--S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIF---QVDGK-VNPKLQ--SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEE---EecCc-cChhhe--eeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 455888877 48899999999999 33222 222222 2223578999999999444499999999999999998
Q ss_pred CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecc
Q 046899 115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHE 194 (407)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 194 (407)
+.+..+.-...... ...+..+.+ ......++..+..|.|.+....+++.+..++ ..
T Consensus 289 ~ak~~k~~~~~g~e----~~~~e~FeV-------------------Shd~~fia~~G~~G~I~lLhakT~eli~s~K-ie 344 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVE----EKSMERFEV-------------------SHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE 344 (514)
T ss_pred ccccccccCCCCcc----cchhheeEe-------------------cCCCCeEEEcccCceEEeehhhhhhhhheee-ec
Confidence 87644321111000 112222222 1223457788899999999999999998886 57
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc-ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA-DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
+.|..++|+.++ ..|++++.+|.|.+||+++.. ++..+....+ .-++++.++ ++.+||+|+..|.|.|||.++..
T Consensus 345 G~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 345 GVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred cEEeeEEEecCC-cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhh
Confidence 889999999998 677777788999999999886 5665543322 335677788 88999999999999999987765
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee--CCCeEEEEeCCCCCcccccccCCCc---ccCCCCcCcchhccc
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGILNIWDHEKIGEKQDYGELKYP---IIHPAYSSDMLDIET 348 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~s~d~~~~~~ 348 (407)
.....+|+.++..-...|++++|++++. |||.+| .+..+|+-.+.+......++....+ |++++|||.
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~------ 493 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN------ 493 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC------
Confidence 5555788988888888999999999998 556665 4788999999998888888876655 677888887
Q ss_pred cceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+.+++.|..+|.+++|.+.
T Consensus 494 ------------sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 ------------SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ------------CceEEeecCCCceeeEeec
Confidence 9999999999999999986
No 125
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.8e-24 Score=203.51 Aligned_cols=242 Identities=16% Similarity=0.276 Sum_probs=193.5
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA 126 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 126 (407)
.++.|..||.+-+|....+-..... ....+...|.+.|..+.|++..+++||+|+.||.|.|||+...+.-....
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~--~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASE--EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--- 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcch--HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---
Confidence 3888999999999954422111112 22233346999999999999888899999999999999998643221110
Q ss_pred CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC
Q 046899 127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206 (407)
Q Consensus 127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 206 (407)
-....+.|.+++|+..-
T Consensus 157 ---------------------------------------------------------------~~~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 157 ---------------------------------------------------------------SQAPPSEIKCLSWNRKV 173 (1049)
T ss_pred ---------------------------------------------------------------CCCCcccceEeccchhh
Confidence 01235689999999887
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--ceEEEEecCCCCCEEEEEeCCC---cEEEEeCCCCCCCCCCCce
Q 046899 207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--DIHCVDWNPHDVNLILTGSADN---SIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~l~tg~~dg---~i~vwd~~~~~~~~~~~~~ 281 (407)
.++|++++.+|++.|||+|..+ .+..+..+.. .+..+.|+|++...+++++.|. .|.+||+|.. ..++
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-----ssP~ 246 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-----SSPL 246 (1049)
T ss_pred hHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-----CCch
Confidence 6899999999999999999886 3445444443 5778999997778888887765 6999999985 4788
Q ss_pred eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc
Q 046899 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG 361 (407)
Q Consensus 282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~ 361 (407)
+++++|...|.++.|++.+..+++|++.|+.|.+|+.++++.+..+......+..+.|.|.. -
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~-----------------P 309 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN-----------------P 309 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCC-----------------c
Confidence 99999999999999999986677899999999999999999999999988899999998762 4
Q ss_pred ceeeeEEEeeeEEEeeccc
Q 046899 362 RLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 362 ~~i~~~~~d~~i~iwd~~~ 380 (407)
..+++.++||.|.|+.+..
T Consensus 310 ~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred chhhhheeccceeeeeeec
Confidence 5788999999999999964
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.9e-23 Score=182.72 Aligned_cols=269 Identities=16% Similarity=0.215 Sum_probs=207.8
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc---ccCc---CCC-----CCCC--------CCcE
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA---VLGA---ADS-----HPDL--------DQSV 136 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~---~~~~---~~~-----~~~~--------d~~i 136 (407)
....+.|..-|.++..+. ..+.+.||+. |.|+|||+........ +... ... .++. -.++
T Consensus 412 q~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 345567999999999887 7788999987 7999999976432111 1110 000 0111 5689
Q ss_pred EEEeccccccccccCC----CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEE
Q 046899 137 VLWSIQDHVSALAAEP----GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212 (407)
Q Consensus 137 ~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s 212 (407)
.|||+......+...- .....++........++...||.|.|||+.....++.+++|++.+.||..+++| ..|.+
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-tklWT 568 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWT 568 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-ceeec
Confidence 9999987644333222 222334455556678889999999999999999999999999999999999999 78999
Q ss_pred EeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE
Q 046899 213 VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL 292 (407)
Q Consensus 213 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~ 292 (407)
|+.|++|+.||++++.+... ....+.|.++..+| .+.+++.|-..+.+-+..... ...+.+..|+..|.
T Consensus 569 GGlDntvRcWDlregrqlqq---hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-------p~kyqlhlheScVL 637 (705)
T KOG0639|consen 569 GGLDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-------PEKYQLHLHESCVL 637 (705)
T ss_pred CCCccceeehhhhhhhhhhh---hhhhhhheecccCC-CccceeeecccCcEEEEecCC-------ccceeecccccEEE
Confidence 99999999999999884322 23467899999999 899999999999999988875 55667778999999
Q ss_pred EEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899 293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV 372 (407)
Q Consensus 293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 372 (407)
++.|.+.|++. ++.+.|+.+..|...-+..+-.... ..+|.+...|.| ..+|++||.|..
T Consensus 638 SlKFa~cGkwf-vStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~d------------------dkyIVTGSGdkk 697 (705)
T KOG0639|consen 638 SLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFD------------------DKYIVTGSGDKK 697 (705)
T ss_pred EEEecccCcee-eecCchhhhhhccCccccceeeccc-cCcceeeeeccC------------------ceEEEecCCCcc
Confidence 99999999965 7999999999999887655544333 456777777666 889999999998
Q ss_pred EEEeec
Q 046899 373 LEIWRM 378 (407)
Q Consensus 373 i~iwd~ 378 (407)
-.||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888875
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.5e-22 Score=163.94 Aligned_cols=278 Identities=17% Similarity=0.213 Sum_probs=175.9
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-----c-ccc-CcCC---CCCCC---------CCcEE
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-----H-AVL-GAAD---SHPDL---------DQSVV 137 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-----~-~~~-~~~~---~~~~~---------d~~i~ 137 (407)
..+.+|.+.|++|+|+. +|+.|||++.|++|++|++..-... + .+. +|.. +.++- ..+++
T Consensus 80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 34558999999999998 9999999999999999998753211 0 000 0100 00000 11122
Q ss_pred EEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899 138 LWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS 217 (407)
Q Consensus 138 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg 217 (407)
+|.+.... . |+..-...-||-. ..-+.|.-.|-.+-.-..+ .++++++.|.
T Consensus 159 vyk~~K~~--------------d---------G~~~~~~v~~D~~-----~f~~kh~v~~i~iGiA~~~-k~imsas~dt 209 (420)
T KOG2096|consen 159 VYKLVKKT--------------D---------GSGSHHFVHIDNL-----EFERKHQVDIINIGIAGNA-KYIMSASLDT 209 (420)
T ss_pred EEEeeecc--------------c---------CCCCccccccccc-----ccchhcccceEEEeecCCc-eEEEEecCCC
Confidence 22111100 0 0000011112211 1112355566666665555 8999999999
Q ss_pred cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC--CCceeeecCCCCCEEEEE
Q 046899 218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV--GSPIHKFEGHSAAVLCVQ 295 (407)
Q Consensus 218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~--~~~~~~~~~h~~~v~~v~ 295 (407)
.|.+|+++ ++ .+..+......-+..+.+| +|+++++++.---|++|.+-..+...- -..+..+++|...|..++
T Consensus 210 ~i~lw~lk-Gq--~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a 285 (420)
T KOG2096|consen 210 KICLWDLK-GQ--LLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA 285 (420)
T ss_pred cEEEEecC-Cc--eeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence 99999998 66 5666666666677788999 999999999988999998743221110 245678899999999999
Q ss_pred EcCCCCCEEEEeeCCCeEEEEeCCCC----CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee
Q 046899 296 WSPDKSSVFGSSAEDGILNIWDHEKI----GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK 371 (407)
Q Consensus 296 ~~~~~~~ll~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 371 (407)
|+|+..++ +|.|.||++++||+.-. +-...+.....|. +.+-+..+ ...+.+ +..+++.+..+
T Consensus 286 Fsn~S~r~-vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl-~aag~~p~----------RL~lsP-~g~~lA~s~gs 352 (420)
T KOG2096|consen 286 FSNSSTRA-VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPL-HAAGSEPV----------RLELSP-SGDSLAVSFGS 352 (420)
T ss_pred eCCCccee-EEEecCCcEEEeeccceEecCCCchHhhcCCcch-hhcCCCce----------EEEeCC-CCcEEEeecCC
Confidence 99999987 69999999999998731 1111111111110 11111101 022222 45677888888
Q ss_pred eEEEeeccccccCChHHHHHHHh-hcccceeEeeccC
Q 046899 372 VLEIWRMIDLIYRPEEEVLAELD-KFKSHIFGCDKSC 407 (407)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~ 407 (407)
+|+++... +++....+. .|...|.+++|++
T Consensus 353 ~l~~~~se------~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 353 DLKVFASE------DGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred ceEEEEcc------cCccchhHHHhhcCceeeEEecC
Confidence 99999988 555555554 5999999999985
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.1e-22 Score=187.95 Aligned_cols=259 Identities=15% Similarity=0.247 Sum_probs=203.7
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
.+|.+.-+.|+|.| +|+.|.|++.||.|++|+....... ..+..+.. .. .
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~--------~v--------------------~ 60 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGE--------LV--------------------S 60 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCc--------ee--------------------E
Confidence 47999999999999 8889999999999999998766322 22111111 00 1
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
..+.....+++++.++.+..+....++.-..+...+-++++++|+-+| .++|.||.|-.|++-++.... ....+.+|
T Consensus 61 ~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s--~~~~lrgh 137 (933)
T KOG1274|consen 61 SIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSS--QEKVLRGH 137 (933)
T ss_pred EEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccc--hheeeccc
Confidence 112222367888899999999888888766666677899999999999 899999999999999998887 67888999
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--------CCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--------HSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
.++|.++.|+| .+++||+.+.||.|++||+.. +.+..++.+ -...+..++|+|+|..++ .-+.|
T Consensus 138 ~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~------~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la-~~~~d 209 (933)
T KOG1274|consen 138 DAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQD------GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA-VPPVD 209 (933)
T ss_pred CCceeeeeEcC-CCCEEEEEecCceEEEEEccc------chhhhhcccCCccccccccceeeeeeecCCCCeEE-eeccC
Confidence 99999999999 899999999999999999998 666666543 145678899999977664 66679
Q ss_pred CeEEEEeCCCCCccccccc--CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH
Q 046899 311 GILNIWDHEKIGEKQDYGE--LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE 388 (407)
Q Consensus 311 ~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~ 388 (407)
+.|++|+.........+.. +...+..+.|||+ |.+|+++..+|.|-|||+. +
T Consensus 210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn------------------G~YiAAs~~~g~I~vWnv~------t-- 263 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN------------------GKYIAASTLDGQILVWNVD------T-- 263 (933)
T ss_pred CeEEEEccCCceeheeecccccccceEEEEEcCC------------------CcEEeeeccCCcEEEEecc------c--
Confidence 9999999998777655543 3333667778776 9999999999999999998 3
Q ss_pred HHHHHhhcccceeEeecc
Q 046899 389 VLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 389 ~~~~~~~h~~~v~~~~~s 406 (407)
..-......|+|++|=
T Consensus 264 --~~~~~~~~~Vc~~aw~ 279 (933)
T KOG1274|consen 264 --HERHEFKRAVCCEAWK 279 (933)
T ss_pred --chhccccceeEEEecC
Confidence 1113445678888874
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=4.5e-22 Score=178.29 Aligned_cols=286 Identities=9% Similarity=0.072 Sum_probs=193.3
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeE-EEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKI-VATHTDSPDVLIWDVEAQPNRHAVLGAA 126 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 126 (407)
+++++.++.+.+|. . +. ......+.+...+.+++|+| +++. +++++.++.|++||..+++....+..+.
T Consensus 4 ~~s~~~d~~v~~~d---~--~t----~~~~~~~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 4 YVSNEKDNTISVID---T--AT----LEVTRTFPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred EEEecCCCEEEEEE---C--CC----CceEEEEECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 45677788888882 1 11 12333334445578899999 5554 5778889999999998776544332211
Q ss_pred CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC
Q 046899 127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206 (407)
Q Consensus 127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 206 (407)
.. ....|+ + .+. ..++++..++.+.+||+.+.+.+..+.. ...+.+++|+|++
T Consensus 74 ~~------~~~~~~-----------~-------~g~--~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg 126 (300)
T TIGR03866 74 DP------ELFALH-----------P-------NGK--ILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG 126 (300)
T ss_pred Cc------cEEEEC-----------C-------CCC--EEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC
Confidence 10 011111 1 111 1123345678999999988777666642 3456889999999
Q ss_pred CcEEEEEeCCC-cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE-EEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899 207 AQEFCSVGDDS-CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLTSDGVGSPIHKF 284 (407)
Q Consensus 207 ~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~ 284 (407)
.++++++.++ .+..||.+++. ..... .......+++|+| ++..++ ++..++.|++||+++ ++.+..+
T Consensus 127 -~~l~~~~~~~~~~~~~d~~~~~--~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~ 195 (300)
T TIGR03866 127 -KIVVNTSETTNMAHFIDTKTYE--IVDNV-LVDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVAT------RKVIKKI 195 (300)
T ss_pred -CEEEEEecCCCeEEEEeCCCCe--EEEEE-EcCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCc------ceeeeee
Confidence 7787777664 57788988766 33322 2234457899999 777775 445699999999998 6666655
Q ss_pred cCCC-------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEe
Q 046899 285 EGHS-------AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMH 357 (407)
Q Consensus 285 ~~h~-------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~ 357 (407)
..+. .....++|+|++++++++.+.++.|.+||+++++...... +...+.+++|+|+
T Consensus 196 ~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~--------------- 259 (300)
T TIGR03866 196 TFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD--------------- 259 (300)
T ss_pred eecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC---------------
Confidence 4221 1235688999999877666677889999998876654442 3456788889888
Q ss_pred eCccceeeeE-EEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 358 LIHGRLLVCL-TMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 358 ~~~~~~i~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..|+++ ..++.|+|||+. +++++..++.. ...++++|++
T Consensus 260 ---g~~l~~~~~~~~~i~v~d~~------~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 260 ---EKYLLTTNGVSNDVSVIDVA------ALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ---CCEEEEEcCCCCeEEEEECC------CCcEEEEEEcc-cccceeEeCC
Confidence 7777765 468899999999 78888888765 4559998875
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=2.3e-21 Score=169.83 Aligned_cols=333 Identities=12% Similarity=0.134 Sum_probs=214.4
Q ss_pred CeeEEEEee--cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC
Q 046899 38 PSLSCRWGP--QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA 115 (407)
Q Consensus 38 p~~s~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 115 (407)
-.++++|++ +..|+.+++.+.|| +.....+..... .|.+.|.++.... +|.+| +|+.|..|..||-.-
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw-------~~~~~~~~k~~~-aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIW-------SKGTNRISKQVH-AHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNY 317 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEE-------eCCCceEEeEee-ecCCceEEEEEec-CccEe-ecCccceEEeccccc
Confidence 345667776 58899999999999 223333444444 8999999999777 78655 599999999999322
Q ss_pred CCCcccccC--cCCCCC---CCCCcEEE---------Eecccc-ccccccCCCCCcccccCCCCCccccccCCCCCCCCC
Q 046899 116 QPNRHAVLG--AADSHP---DLDQSVVL---------WSIQDH-VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLE 180 (407)
Q Consensus 116 ~~~~~~~~~--~~~~~~---~~d~~i~~---------w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 180 (407)
. .++..+- ....+. ...+.+.+ =.+++. ......+.+..--.+.......+++.+.|+.+++|+
T Consensus 318 ~-k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 318 R-KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred c-ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 2 1111111 111110 00111111 122222 112333344444445555567788999999999999
Q ss_pred CCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC
Q 046899 181 SPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA 260 (407)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~ 260 (407)
..+++-+ +.-..++.|+.|+|.| .+|.|+..|...+.|.++.. .+..-.. +.++++++|+| +|.+||.|+.
T Consensus 397 --~~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~--lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~ 467 (626)
T KOG2106|consen 397 --DHKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQD--LVTIHTD-NEQLSVVRYSP-DGAFLAVGSH 467 (626)
T ss_pred --CCceeEE-EEecCceeEeeccCcc--eEEEeeccceEEEEecccce--eEEEEec-CCceEEEEEcC-CCCEEEEecC
Confidence 2222222 2346789999999998 79999999999999999865 3433333 89999999999 9999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCceee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY 339 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 339 (407)
|+.|++|-+.... ..... -+.|.++|+.+.|++|++++ .+-+.|-.|-.|.....++... +..+.|
T Consensus 468 d~~iyiy~Vs~~g-----~~y~r~~k~~gs~ithLDwS~Ds~~~-~~~S~d~eiLyW~~~~~~~~ts-------~kDvkW 534 (626)
T KOG2106|consen 468 DNHIYIYRVSANG-----RKYSRVGKCSGSPITHLDWSSDSQFL-VSNSGDYEILYWKPSECKQITS-------VKDVKW 534 (626)
T ss_pred CCeEEEEEECCCC-----cEEEEeeeecCceeEEeeecCCCceE-EeccCceEEEEEccccCcccce-------ecceee
Confidence 9999999987742 22222 23355899999999999987 5999999999995443333322 111111
Q ss_pred cCc-c-hh-----ccccceeeeeEeeCc-cceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 340 SSD-M-LD-----IETKLLTSIGMHLIH-GRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 340 s~d-~-~~-----~~~~~~~~~~~~~~~-~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
... + .. ...+.... .+...| .+.+++|..-|+|++|...- .+...+-.++.+|++.|++|+|+|
T Consensus 535 ~t~~c~lGF~v~g~s~~t~i~-a~~rs~~~~~lA~gdd~g~v~lf~yPc---~s~rA~~he~~ghs~~vt~V~Fl~ 606 (626)
T KOG2106|consen 535 ATYTCTLGFEVFGGSDGTDIN-AVARSHCEKLLASGDDFGKVHLFSYPC---SSPRAPSHEYGGHSSHVTNVAFLC 606 (626)
T ss_pred eeeEEEEEEEEecccCCchHH-HhhhhhhhhhhhccccCceEEEEcccc---CCCcccceeeccccceeEEEEEee
Confidence 100 0 00 00000000 011112 45667888888999998752 123455678999999999999987
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=7e-23 Score=177.25 Aligned_cols=211 Identities=17% Similarity=0.256 Sum_probs=172.7
Q ss_pred eCCCceEEEEEeCCCC-eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899 81 IHPGEVNRIRELPQNS-KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA 159 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
-|.++|.+++|+|... +++|+|+.-|+|-+||+.+.+..
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------------------- 223 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------------------- 223 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------------------------------------
Confidence 4899999999999666 79999999999999999732211
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
..-+..+..|..+|.+|.|+|.....+++.+.||+|++-|++......+.......
T Consensus 224 ------------------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~ 279 (498)
T KOG4328|consen 224 ------------------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN 279 (498)
T ss_pred ------------------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence 11234455799999999999998889999999999999999987643333443345
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
..+..++|+. +...++.|+.=|...+||.|+. +.....+.-|+..|.+|+++|-.+++|||+|.|++.+|||++
T Consensus 280 ~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~-----~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 280 IWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTD-----GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred eeeeeccccC-CCccEEEeecccceEEEEeecC-----CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 5677888988 6667777777789999999994 344666777889999999999999999999999999999999
Q ss_pred CCCcccc----cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 320 KIGEKQD----YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 320 ~~~~~~~----~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+...... ...|..+|.++.|||+ +..|++.+.|..|||||..
T Consensus 354 ~l~~K~sp~lst~~HrrsV~sAyFSPs------------------~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 354 QLRGKASPFLSTLPHRRSVNSAYFSPS------------------GGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhcCCCCcceecccccceeeeeEEcCC------------------CCceEeeccCCceEEeecc
Confidence 7655443 3468899999999998 6669999999999999984
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-22 Score=184.62 Aligned_cols=320 Identities=17% Similarity=0.184 Sum_probs=232.5
Q ss_pred ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899 46 PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA 125 (407)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 125 (407)
..+.-|+..+..+||... .........++...|+++.-+| -=+.+|.|..+|+|.++++..++.+.++...
T Consensus 173 NKIvvGs~~G~lql~Nvr--------t~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVR--------TGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred eeEEEeecCCcEEEEEec--------cCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEcc
Confidence 346677888889999221 1123445557889999999888 6779999999999999999998877666543
Q ss_pred CCCCC------CC---------CCcEEEEeccccccc---cccCCCCCcccccCCCCCccccccCCCCCCCCCCCC--c-
Q 046899 126 ADSHP------DL---------DQSVVLWSIQDHVSA---LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS--I- 184 (407)
Q Consensus 126 ~~~~~------~~---------d~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~- 184 (407)
...+. ++ .|.+.+||++..... ...+.+++.....-.-...+++++.|..+++|-.++ +
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 22221 11 689999999987442 234444555554545556788889999998874443 3
Q ss_pred -CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--------------------------CCceee---
Q 046899 185 -GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS--------------------------TPAVKV--- 234 (407)
Q Consensus 185 -~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~--- 234 (407)
+.++.-.+|..+-.||.|.-.....+.+++.|++.+.+++.... .|.+..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 23444558999999999985444788888999888887764210 000000
Q ss_pred ----------------------------------eccc------CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899 235 ----------------------------------EKAH------NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 235 ----------------------------------~~~~------~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~ 274 (407)
...+ ...+++++.++ .|++.+.|...|.|-+|+++.
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS--- 479 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS--- 479 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc---
Confidence 0011 24578899999 999999999999999999999
Q ss_pred CCCCCceeee---cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc---------------------------
Q 046899 275 DGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK--------------------------- 324 (407)
Q Consensus 275 ~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~--------------------------- 324 (407)
+-...++ ..|..+|++++...-++ +++|++.+|.+++||+.+...+
T Consensus 480 ---Gi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 480 ---GIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred ---CeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence 7777777 57999999999987777 5579999999999998864422
Q ss_pred --------------cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899 325 --------------QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL 390 (407)
Q Consensus 325 --------------~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~ 390 (407)
+.+.+|+..|++++|||| +.+|++.+.|++||+||+. ++.++
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~D------------------grWlisasmD~tIr~wDlp------t~~lI 611 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPD------------------GRWLISASMDSTIRTWDLP------TGTLI 611 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCC------------------CcEEEEeecCCcEEEEecc------Cccee
Confidence 224567777788888887 9999999999999999998 67666
Q ss_pred HHHhhcccceeEeeccC
Q 046899 391 AELDKFKSHIFGCDKSC 407 (407)
Q Consensus 391 ~~~~~h~~~v~~~~~s~ 407 (407)
.-+. -....+++.|||
T Consensus 612 D~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 612 DGLL-VDSPCTSLSFSP 627 (910)
T ss_pred eeEe-cCCcceeeEECC
Confidence 5544 344566777775
No 133
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-23 Score=173.93 Aligned_cols=204 Identities=15% Similarity=0.286 Sum_probs=171.3
Q ss_pred ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC---
Q 046899 149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--- 225 (407)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--- 225 (407)
.++.+++.-.+.......+.+++.|.+.+||.++++.++..|.+|.+.|++|+|++.+ .++++++.|++.+||...
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcC
Confidence 3344444434444445678889999999999999999999999999999999999999 899999999999999621
Q ss_pred ---CCC--------------------------------CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 226 ---SGS--------------------------------TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 226 ---~~~--------------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
+.. ..++..+.+|.+.|.+..|-. ++..+++++.|.+..+||++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeeeec
Confidence 100 013455678999999999988 89999999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC-CcccccccCCCcccCCCCcCcchhcccc
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI-GEKQDYGELKYPIIHPAYSSDMLDIETK 349 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~ 349 (407)
+ ++++..+.+|....+.+.-+|..+ |+++++.|.+.++||++.. ..+..|.+|...|+++.|..
T Consensus 303 t------ge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-------- 367 (481)
T KOG0300|consen 303 T------GEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-------- 367 (481)
T ss_pred c------CceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEec--------
Confidence 9 999999999999999999999988 5679999999999999842 34567889999998888844
Q ss_pred ceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 350 LLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+..|++|+.|.+|+|||+..
T Consensus 368 -----------dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 368 -----------DDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred -----------CCceeecCCCceEEEeeecc
Confidence 56899999999999999973
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.3e-22 Score=173.52 Aligned_cols=168 Identities=20% Similarity=0.333 Sum_probs=145.7
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
.+|+..|..++|+..-.++||+||.|.+|++||+.+++ +..++..|...|.++.|+|..+.+|++|+.|++|.+.|.|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 46999999999998877899999999999999999999 6778888999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC-CcccccccCCCcccCCCCcCcchhcccc
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI-GEKQDYGELKYPIIHPAYSSDMLDIETK 349 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~ 349 (407)
.+. ..-..++ -.+.|-.++|.|.....|.++..||+++-+|+++. +.+-++..|..+|.+++++.-.
T Consensus 318 ~~~-----~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~------ 385 (463)
T KOG0270|consen 318 DPS-----NSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT------ 385 (463)
T ss_pred Ccc-----ccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCC------
Confidence 632 2333343 35789999999999888889999999999999987 6667889999999999887652
Q ss_pred ceeeeeEeeCccceeeeEEEeeeEEEeecccccc
Q 046899 350 LLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY 383 (407)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~ 383 (407)
.+.+++++.|+.|++|++.....
T Consensus 386 -----------p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 386 -----------PGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred -----------CcceeeccccceEEEEeecCCCC
Confidence 56788999999999999975444
No 135
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=162.71 Aligned_cols=286 Identities=14% Similarity=0.236 Sum_probs=197.6
Q ss_pred eEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC
Q 046899 86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS 165 (407)
Q Consensus 86 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (407)
...+.|+| +|.-|++-+.|..+++|++...-............ ....+....+...+.... ...+....+...
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~-----~~~~~r~~eg~tvydy~w-Ys~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS-----KHLSYRYQEGETVYDYCW-YSRMKSDQPSTN 124 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccc-----cceeEEeccCCEEEEEEe-eeccccCCCccc
Confidence 34677999 88999999999999999987542111111100000 000000011100000000 001111223334
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEee--ccc---CEEEEEECCCCCcEEEEEeCCCcEEEEEc-CCCCCCceeee----
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLG--HED---TVEDVQFCPSSAQEFCSVGDDSCLILWDA-RSGSTPAVKVE---- 235 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~---~v~~l~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~---- 235 (407)
..++.+.+.-|.+||.-+++....+.+ |.. ...+++|+|+| .+|++| ....|++||+ |.+..-.....
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence 567788899999999999998887764 443 44689999999 566655 5789999999 55542222222
Q ss_pred -cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 236 -KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 236 -~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
.+..+.+.|++|+|.+...++.|+...++-||.-.. +.++..+.+|.+.|+.++|+++|..++.-+-.|..|-
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL 276 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCC------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence 234678899999998888999999999999998877 7899999999999999999999999984444688999
Q ss_pred EEeCCCCCcc-cccccCCC-cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHH
Q 046899 315 IWDHEKIGEK-QDYGELKY-PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAE 392 (407)
Q Consensus 315 vwd~~~~~~~-~~~~~~~~-~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 392 (407)
.||++..+.+ -.+..|.. .-..+ . |-+...++.+++|+.||.|++||+.. -++.+..
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI-------------~---FDld~~~~~LasG~tdG~V~vwdlk~-----~gn~~sv 335 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRI-------------L---FDLDPKGEILASGDTDGSVRVWDLKD-----LGNEVSV 335 (406)
T ss_pred EEeehhccchhhhhhhhccCccceE-------------E---EecCCCCceeeccCCCccEEEEecCC-----CCCcccc
Confidence 9999975543 33333322 11112 2 55556688999999999999999983 3778999
Q ss_pred HhhcccceeEeeccC
Q 046899 393 LDKFKSHIFGCDKSC 407 (407)
Q Consensus 393 ~~~h~~~v~~~~~s~ 407 (407)
+..|+..|+.|++.|
T Consensus 336 ~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNP 350 (406)
T ss_pred cccccccccceecCc
Confidence 999999999999865
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-21 Score=160.88 Aligned_cols=267 Identities=16% Similarity=0.306 Sum_probs=181.2
Q ss_pred EEEEe-ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEe-CCCCeEEEEeeCCCcEEEEeCcCCCC
Q 046899 41 SCRWG-PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIREL-PQNSKIVATHTDSPDVLIWDVEAQPN 118 (407)
Q Consensus 41 s~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~tg~~dg~i~vwd~~~~~~ 118 (407)
++++. ..+++.+.|.+++|| ++ ............-..|.+.|..|.|. |.-|+.+|+++.|++++||.-....
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~---d~-~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~- 94 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIW---DS-TSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS- 94 (361)
T ss_pred eecccCceeeeccCCCcEEEE---ec-cCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc-
Confidence 45553 358999999999999 22 22223333334444699999999995 5679999999999999999864211
Q ss_pred cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEE
Q 046899 119 RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVE 198 (407)
Q Consensus 119 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~ 198 (407)
...+ -+-| ....++......|+
T Consensus 95 ---~~~~----------~~~W---------------------------------------------v~~ttl~DsrssV~ 116 (361)
T KOG2445|consen 95 ---EEAH----------GRRW---------------------------------------------VRRTTLVDSRSSVT 116 (361)
T ss_pred ---cccc----------ccee---------------------------------------------EEEEEeecCCccee
Confidence 1111 0111 12345556778999
Q ss_pred EEEECCCC-CcEEEEEeCCCcEEEEEcCCCC----CCceeeec-------ccCcceEEEEecCC--CCCEEEEEeCC---
Q 046899 199 DVQFCPSS-AQEFCSVGDDSCLILWDARSGS----TPAVKVEK-------AHNADIHCVDWNPH--DVNLILTGSAD--- 261 (407)
Q Consensus 199 ~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-------~~~~~v~~l~~~~~--~~~~l~tg~~d--- 261 (407)
.++|.|.. +-.||+++.||.||||+.-... .++...+. .+..+..|+.|+|. ...+||.|+.+
T Consensus 117 DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~ 196 (361)
T KOG2445|consen 117 DVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP 196 (361)
T ss_pred EEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCc
Confidence 99999963 2679999999999999876542 11112222 35667789999872 24678888866
Q ss_pred --CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC---CCEEEEeeCCCeEEEEeCCCCC--------------
Q 046899 262 --NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGILNIWDHEKIG-------------- 322 (407)
Q Consensus 262 --g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~ll~s~~~d~~i~vwd~~~~~-------------- 322 (407)
+.++||......+ ....+.++.+|..+|++++|.|+- -+++|+++.|| |+||.++...
T Consensus 197 ~~~~~~Iye~~e~~r--Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~ 273 (361)
T KOG2445|consen 197 HLNKVKIYEYNENGR--KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLM 273 (361)
T ss_pred cccceEEEEecCCcc--eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCc
Confidence 4788987655221 156677888999999999999963 35789999999 9999998422
Q ss_pred ------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 323 ------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 323 ------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
.+..+..|..+|+.+.|+-. +-.|.+.+.||+||+|..+ |.+...|+..+.
T Consensus 274 ~~l~v~~vs~~~~H~~~VWrv~wNmt------------------GtiLsStGdDG~VRLWkan---y~n~~kC~sv~~ 330 (361)
T KOG2445|consen 274 TDLPVEKVSELDDHNGEVWRVRWNMT------------------GTILSSTGDDGCVRLWKAN---YNNLWKCTSVLK 330 (361)
T ss_pred cccceEEeeeccCCCCceEEEEEeee------------------eeEEeecCCCceeeehhhh---hhhhheeeeEEe
Confidence 11223445555555544322 5567788999999999876 333455555444
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.1e-21 Score=168.21 Aligned_cols=291 Identities=14% Similarity=0.181 Sum_probs=196.4
Q ss_pred CCCeeEEEEee-----cccccCccceEEEEeecccC-cccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899 36 VWPSLSCRWGP-----QLEQATYKNRQRLYLSEQFN-EEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL 109 (407)
Q Consensus 36 ~~p~~s~~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~ 109 (407)
+-+..+.+|.| .++.|.-.|.+=+| ++. ++.+.+.. ....+|.++|.+|.|+|.+...+.+.++||+||
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~W---n~~~~~~d~d~v--~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLW---NFGTQEKDKDGV--YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEE---ecCCCCCccCce--EEeccCCccccceEecCCChhheeeeccCceee
Confidence 44666789988 37778888899999 553 22223222 333479999999999999999999999999999
Q ss_pred EEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc-ee
Q 046899 110 IWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-RG 188 (407)
Q Consensus 110 vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~ 188 (407)
+=|++.......+... +..+.+.+++ ........+.+..-|...+||...... ..
T Consensus 261 ~~D~~~~i~e~v~s~~-------~d~~~fs~~d-----------------~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLD-------TDNIWFSSLD-----------------FSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred eeeecchhhHHHhhcC-------ccceeeeecc-----------------ccCCCccEEEeecccceEEEEeecCCccch
Confidence 9999876432222111 0111111111 001111233444555667777766554 55
Q ss_pred eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc--eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA--VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
.+.-|...|..++++|..+.+|+++|.|++++|||+|+..... ......|...|.+..|+|.+++ |+|-+.|..|+|
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv 395 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRV 395 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEE
Confidence 5666888999999999999999999999999999999755222 3455689999999999995555 899999999999
Q ss_pred EeCCCCCCCCCCCceeeecCCCC------CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC-cccCC-C
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSA------AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY-PIIHP-A 338 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~------~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~-~ 338 (407)
||..-.... ..++.++. |.. .....+|.|+.. +++.|-.-..|-|+|-+.++.+..+..... .|.++ .
T Consensus 396 ~dss~~sa~--~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~ 471 (498)
T KOG4328|consen 396 FDSSCISAK--DEPLGTIP-HNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNE 471 (498)
T ss_pred eeccccccc--CCccceee-ccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCcccccccccee
Confidence 998411100 45555554 322 345678999888 567998888999999888765655443222 33333 2
Q ss_pred CcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeec
Q 046899 339 YSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRM 378 (407)
Q Consensus 339 ~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~ 378 (407)
|.| -+. .++.++..|.|+||--
T Consensus 472 ~HP------------------~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 472 FHP------------------MRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ecc------------------cccceeccCCccceEEEEec
Confidence 333 255 3444455668888854
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-21 Score=169.41 Aligned_cols=231 Identities=18% Similarity=0.240 Sum_probs=182.9
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
..--.++|.+++-+| .|.+|+.|+..|.|.+|.+.++..+..+..|-..+.+ +
T Consensus 77 ~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITc--------------------------L 129 (476)
T KOG0646|consen 77 YIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITC--------------------------L 129 (476)
T ss_pred hcccccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeE--------------------------E
Confidence 334678999999887 9999999989999999999999888777666544322 2
Q ss_pred ccCCCCCccccccCCCCCCCCCC---------CCcCceeeEeecccCEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCC
Q 046899 159 ASGGANSKNASKSGGNGDKPLES---------PSIGARGKYLGHEDTVEDVQFCPSS-AQEFCSVGDDSCLILWDARSGS 228 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~---------~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 228 (407)
.+...++.+++++.||.+.+|.+ .+-+++..+..|+-+|+++...+.+ ...++++|.|.++++||+..+.
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 22233345667777777777743 1446778888999999999987653 2479999999999999999987
Q ss_pred CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC--CC--------CCCCceeeecCCCC--CEEEEEE
Q 046899 229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT--SD--------GVGSPIHKFEGHSA--AVLCVQW 296 (407)
Q Consensus 229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~--------~~~~~~~~~~~h~~--~v~~v~~ 296 (407)
.+.++ ..+..+.+++.+| .++.++.|+.+|.|.+.++.... +. ..+..+..+.+|.. .|+|++.
T Consensus 210 --LLlti-~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 210 --LLLTI-TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred --eeEEE-ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 44443 5678899999999 88999999999999999886643 11 11455667788988 9999999
Q ss_pred cCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899 297 SPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSS 341 (407)
Q Consensus 297 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 341 (407)
+-||. +|++|+.||+|+|||+.+.+.++++....++|+.+.+.|
T Consensus 286 s~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 286 STDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred ecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 99999 557999999999999999999988887888888887733
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6e-21 Score=158.04 Aligned_cols=234 Identities=16% Similarity=0.248 Sum_probs=173.5
Q ss_pred CeeEEEEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCC-CeEEEEeeCCCcEEEEeCcCC
Q 046899 38 PSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQN-SKIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 38 p~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~tg~~dg~i~vwd~~~~ 116 (407)
.++.|+| |.+++|+.|.+++||- .. ...+...++.|.+.|+++.|.++- .+.|++|+.||.|.+|+...-
T Consensus 47 tavAVs~-~~~aSGssDetI~IYD-----m~---k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 47 TALAVSG-PYVASGSSDETIHIYD-----MR---KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred eEEEecc-eeEeccCCCCcEEEEe-----cc---chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 3334444 7899999999999991 11 123344566799999999998732 237999999999999999998
Q ss_pred CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC
Q 046899 117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT 196 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 196 (407)
.++..+.+|...+.++ ...+.++ ..++.+.|+.++.|++-.++.-..+.- ...
T Consensus 118 ~~~~slK~H~~~Vt~l-----------------------siHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~ 170 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDL-----------------------SIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNL-KNK 170 (362)
T ss_pred EEeeeeccccccccee-----------------------EecCCCc---eEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence 8888888876553321 1122332 256677888899999887776544432 223
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~ 276 (407)
.+.+.|+|.| .+|+.++. ..|-+|.+.+-. ..... .....+.|+.|. ++..+++|+.|+.|++||...
T Consensus 171 at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~--v~~~i-~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds----- 238 (362)
T KOG0294|consen 171 ATLVSWSPQG-DHFVVSGR-NKIDIYQLDNAS--VFREI-ENPKRILCATFL--DGSELLVGGDNEWISLKDTDS----- 238 (362)
T ss_pred ceeeEEcCCC-CEEEEEec-cEEEEEecccHh--Hhhhh-hccccceeeeec--CCceEEEecCCceEEEeccCC-----
Confidence 3459999999 67777765 478999988765 22222 334557777776 578999999999999999998
Q ss_pred CCCceeeecCCCCCEEEEEE-c-CCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 277 VGSPIHKFEGHSAAVLCVQW-S-PDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~-~-~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
..++..+.+|...|-++.+ . |++. +|+|+|.||.|+|||++..
T Consensus 239 -~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 239 -DTPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -CccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEcccc
Confidence 7999999999999999984 3 4455 5689999999999999975
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.2e-21 Score=157.46 Aligned_cols=245 Identities=15% Similarity=0.258 Sum_probs=183.1
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
+|.+-|+++.|.+ -|+.+|||+.|++|+|||..+..
T Consensus 11 ~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s------------------------------------------- 46 (361)
T KOG2445|consen 11 GHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDS------------------------------------------- 46 (361)
T ss_pred CCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCC-------------------------------------------
Confidence 6999999999998 89999999999999999985432
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEEC-CCCCcEEEEEeCCCcEEEEEcCCCC-------CCce
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGS-------TPAV 232 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~ 232 (407)
.+..+....+.|.+.|..+.|- |.-++.+|+++.|+++.||.-...+ ....
T Consensus 47 ---------------------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ 105 (361)
T KOG2445|consen 47 ---------------------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR 105 (361)
T ss_pred ---------------------CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEE
Confidence 1112345667899999999994 4434899999999999999863221 1233
Q ss_pred eeecccCcceEEEEecCC-CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-------CCCCCEEEEEEcCCC--CC
Q 046899 233 KVEKAHNADIHCVDWNPH-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-------GHSAAVLCVQWSPDK--SS 302 (407)
Q Consensus 233 ~~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~--~~ 302 (407)
.++....+.|+.+.|.|. -|-.||+++.||.+|||+.-.+.....+....+++ .+..+..|+.|+|.. +.
T Consensus 106 ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 106 TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEP 185 (361)
T ss_pred EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCc
Confidence 455667789999999983 36789999999999999987655444455555555 467789999999753 33
Q ss_pred EEEEeeCC-----CeEEEEeCCCCC----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCc-cceeeeEEEeee
Q 046899 303 VFGSSAED-----GILNIWDHEKIG----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH-GRLLVCLTMVKV 372 (407)
Q Consensus 303 ll~s~~~d-----~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~ 372 (407)
+||.|+.+ +.+.||...... .+.++.++..||+.++|.|++ |. -..|++++.||
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~---------------Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI---------------GRSYHLLAVATKDG- 249 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc---------------CCceeeEEEeecCc-
Confidence 66777755 489999876543 456788999999999999983 11 23688999999
Q ss_pred EEEeeccccc--------------cCChHHHHHHHhhcccceeEeecc
Q 046899 373 LEIWRMIDLI--------------YRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 373 i~iwd~~~~~--------------~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
|+||++.... ..-.-+.+..+.+|++.|+.+.|.
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence 9999997311 011123456788999999998874
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.2e-21 Score=157.53 Aligned_cols=290 Identities=18% Similarity=0.222 Sum_probs=200.5
Q ss_pred CeeEEEE--eecccccCccceEEEEeec---ccCcccCCccee----eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcE
Q 046899 38 PSLSCRW--GPQLEQATYKNRQRLYLSE---QFNEEARSPFVK----KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDV 108 (407)
Q Consensus 38 p~~s~~~--~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i 108 (407)
-++.++. ...+.+|..|+.+.+|-.+ +|..+.-....+ .....+|+-.|..+.|.|.+.-++.+++.|.++
T Consensus 47 NsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtl 126 (397)
T KOG4283|consen 47 NSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTL 126 (397)
T ss_pred ceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceE
Confidence 3444444 2358899999999999554 222221111122 223345888999999999888899999999999
Q ss_pred EEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee
Q 046899 109 LIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG 188 (407)
Q Consensus 109 ~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 188 (407)
+|||.++.+....+ ..+.....-. ..+...-...+++|..+-.+++-|+.++..-.
T Consensus 127 KVWDtnTlQ~a~~F-----------------~me~~VYsha-------mSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 127 KVWDTNTLQEAVDF-----------------KMEGKVYSHA-------MSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred EEeecccceeeEEe-----------------ecCceeehhh-------cChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 99999987544332 1111111101 11111112346678888899999999999999
Q ss_pred eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-------------CCCceeeecccCcceEEEEecCCCCCEE
Q 046899 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG-------------STPAVKVEKAHNADIHCVDWNPHDVNLI 255 (407)
Q Consensus 189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l 255 (407)
++.+|.+.|.++.|+|.....|++|+.||.|++||+|.- ..|..+.-.+|.+.|+.++|.. ++.++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l 261 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYL 261 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhh
Confidence 999999999999999998789999999999999999854 1233344567889999999999 99999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCceeeec--CCCC----CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 256 LTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GHSA----AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 256 ~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h~~----~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
++++.|..+++|+..+... .+..+- .|.. .+. ++ +-+.. +|+---.|+.+.++.+-.+..++.+..
T Consensus 262 ~~~gtd~r~r~wn~~~G~n-----tl~~~g~~~~n~~~~~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRN-----TLREFGPIIHNQTTSFAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred hhccCccceEEeecccCcc-----cccccccccccccccceEE-Ee-ecccc-eEEEEecCCeEEEEEccCceEEEeeec
Confidence 9999999999999877221 111110 0111 111 22 22222 333444568888888888888888888
Q ss_pred CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 330 LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 330 ~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
|...+.+.+|-|+ =....+|..|+.|.-|-.
T Consensus 334 h~k~i~c~~~~~~------------------fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 334 HLKRINCAAYRPD------------------FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceeeEEeecCc------------------hhhhhccccCCccccccc
Confidence 8777777777666 234557778888888865
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.1e-22 Score=177.86 Aligned_cols=274 Identities=18% Similarity=0.213 Sum_probs=197.0
Q ss_pred ceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC-----CCCCCC---------------
Q 046899 73 FVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA-----DSHPDL--------------- 132 (407)
Q Consensus 73 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~--------------- 132 (407)
........||++.|.+|+..| .|.+||+|+.||+||||.+.++.|+..+.--. .+.+..
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred ceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 333456668999999999999 99999999999999999999998775443211 000000
Q ss_pred ---------------------------CCcEEEEecccc------ccccccCCCCCcccccCCCCCcccc---ccCCCCC
Q 046899 133 ---------------------------DQSVVLWSIQDH------VSALAAEPGSAKSTASGGANSKNAS---KSGGNGD 176 (407)
Q Consensus 133 ---------------------------d~~i~~w~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i 176 (407)
++.+..|.-... .+....++..+..+....-..++++ .+....+
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 445556643311 1222223333333333233333443 3344566
Q ss_pred CCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE
Q 046899 177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL 256 (407)
Q Consensus 177 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 256 (407)
.|.++.....+..++...+.|.++.|+|..+ +|+.++ ...|++||+.... .++.+......|.+++.+| .|.-|+
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqe--lvKkL~tg~kwiS~msihp-~GDnli 623 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQE--LVKKLLTGSKWISSMSIHP-NGDNLI 623 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHH--HHHHHhcCCeeeeeeeecC-CCCeEE
Confidence 6777777776667766778899999999984 555554 3789999998766 6667767778899999999 888899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC---------Cccccc
Q 046899 257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI---------GEKQDY 327 (407)
Q Consensus 257 tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~---------~~~~~~ 327 (407)
.|+.|+.+..||+... .++.++++.|...|++|+||+.-+ |||+|+.||++.|+.-.-. -.+..+
T Consensus 624 ~gs~d~k~~WfDldls-----skPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLS-----SKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred EecCCCeeEEEEcccC-----cchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 9999999999999863 478899999999999999999988 7899999999999964321 112344
Q ss_pred ccCCCc----ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899 328 GELKYP----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW 376 (407)
Q Consensus 328 ~~~~~~----v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw 376 (407)
.+|... |..+.|.|. ..++++++.||+|++|
T Consensus 698 ~gH~~~~~~gVLd~~wHP~------------------qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPR------------------QPWLFSAGADGTIRLF 732 (733)
T ss_pred cCceeecccceEeecccCC------------------CceEEecCCCceEEee
Confidence 555433 666667665 7889999999999998
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.9e-22 Score=192.69 Aligned_cols=260 Identities=18% Similarity=0.316 Sum_probs=200.9
Q ss_pred cceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe---EEEEeeCCCcEEEEeCcCCCCcccccCcCCCCC
Q 046899 54 KNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK---IVATHTDSPDVLIWDVEAQPNRHAVLGAADSHP 130 (407)
Q Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 130 (407)
+.+..|| .++..+.....+....+.-...-+.|+|.+.... +||.|..||.|-+||...... .
T Consensus 38 ~~slEif---eld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----~------ 103 (1049)
T KOG0307|consen 38 SASLEIF---ELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----N------ 103 (1049)
T ss_pred cccccee---eecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----C------
Confidence 3345566 3333333333344555556678899999883333 599999999999999875300 0
Q ss_pred CCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEE
Q 046899 131 DLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEF 210 (407)
Q Consensus 131 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 210 (407)
.....+.++..|++.|..+.|++.++++|
T Consensus 104 ---------------------------------------------------~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 104 ---------------------------------------------------ASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ---------------------------------------------------cchHHHhhhcccCCceeeeeccccCCcee
Confidence 11234556678999999999999998899
Q ss_pred EEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC-
Q 046899 211 CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA- 289 (407)
Q Consensus 211 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~- 289 (407)
|+|+.||.|.|||+.+.+.+.........+.|.+++|+......|++++.+|++.|||+|. .+++-.+..|..
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~------~~pii~ls~~~~~ 206 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK------KKPIIKLSDTPGR 206 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC------CCcccccccCCCc
Confidence 9999999999999998775433323345788999999997788999999999999999998 677777776544
Q ss_pred -CEEEEEEcCCCCCEEEEeeCC---CeEEEEeCCCCCc-ccccccCCCcccCCCCcCcchhccccceeeeeEeeCcccee
Q 046899 290 -AVLCVQWSPDKSSVFGSSAED---GILNIWDHEKIGE-KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL 364 (407)
Q Consensus 290 -~v~~v~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i 364 (407)
.+..++|||+...-+++++.| -.|.+||++.... ++.+.+|...|.++.|++- ...++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~-----------------D~~ll 269 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ-----------------DPRLL 269 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC-----------------Cchhh
Confidence 588999999986555566655 3699999986544 5677899999999999764 14688
Q ss_pred eeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 365 VCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 365 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
++..-|+.|.+|+.+ ++|.+..+..-.+.++.|.|++
T Consensus 270 lSsgkD~~ii~wN~~------tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 270 LSSGKDNRIICWNPN------TGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred hcccCCCCeeEecCC------CceEeeecCCCCcceeeeeecC
Confidence 899999999999999 8999999999888899999875
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=5e-22 Score=173.60 Aligned_cols=289 Identities=16% Similarity=0.183 Sum_probs=214.4
Q ss_pred cchhhhhhhhccCceEEEeeeecccCCCeeEEEEeec--c--cccCccceEEEEeecccCcccCCcceeeEEEeeCCCce
Q 046899 11 SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ--L--EQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEV 86 (407)
Q Consensus 11 ~~~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 86 (407)
+.-+.+++|.-..-..-+-..++..+...-++.|... + ++...|..+++| ......|........+-+ .-
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~-----~K~g~~~~Vp~~~k~~gd-~~ 82 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIK-----EKDGKTPEVPRVRKLTGD-NA 82 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEe-----cccCCCCccceeeccccc-hH
Confidence 3456778888777666555556666655667888542 3 344555577777 223334444444443322 34
Q ss_pred EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCc
Q 046899 87 NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSK 166 (407)
Q Consensus 87 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (407)
.|++... ...++++|+..+.|+|||++...+.+.+.+|... |..-+ ....+.+
T Consensus 83 ~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st-------vt~v~-------------------YN~~Dey 135 (673)
T KOG4378|consen 83 FCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST-------VTYVD-------------------YNNTDEY 135 (673)
T ss_pred HHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcce-------eEEEE-------------------ecCCcce
Confidence 4444333 4479999999999999999977777777776533 22222 3333456
Q ss_pred cccccCCCCCCCCCCCCcCceeeEeec-ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLGH-EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV 245 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l 245 (407)
+++++..|.|.|....++.....+... ...|.-+.|+|....+|.+++.+|.|.+||+.... |.......|..+...|
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-p~~~~~~~HsAP~~gi 214 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-PIFHASEAHSAPCRGI 214 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-cccchhhhccCCcCcc
Confidence 888888999999988888877777644 44666899999987889999999999999998655 3455667899999999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc-c
Q 046899 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE-K 324 (407)
Q Consensus 246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~-~ 324 (407)
+|+|.+..+|++.+.|..|.+||.+. .+....+. .+.+...++|.++|.+| +.|...|.|..||++..+. +
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Plstvaf~~~G~~L-~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPLSTVAFSECGTYL-CAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred eecCCccceEEEecccceEEEeeccc------ccccceee-ecCCcceeeecCCceEE-EeecCCceEEEEecccCCCCc
Confidence 99998889999999999999999997 56666665 46789999999999965 7999999999999997655 4
Q ss_pred cccccCCCcccCCCCcC
Q 046899 325 QDYGELKYPIIHPAYSS 341 (407)
Q Consensus 325 ~~~~~~~~~v~~~~~s~ 341 (407)
.....|+..|++++|-+
T Consensus 287 ~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQP 303 (673)
T ss_pred eEeeecccceeEEEeee
Confidence 67788999999999844
No 145
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=3.2e-21 Score=157.84 Aligned_cols=208 Identities=21% Similarity=0.392 Sum_probs=157.1
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
+-+.|.|+.|.| ++..||+-. |..|.+|++.....+ ..+....
T Consensus 122 avg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~---------------------------------- 165 (370)
T KOG1007|consen 122 AVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE---------------------------------- 165 (370)
T ss_pred HhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccc----------------------------------
Confidence 557999999999 777777766 789999999876542 2111100
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
-.++....++-+|+|. ..+.+++. .|+++..||+|+..+ ......+|.
T Consensus 166 -----------------------------s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~-~~sI~dAHg 214 (370)
T KOG1007|consen 166 -----------------------------SAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK-NNSIEDAHG 214 (370)
T ss_pred -----------------------------cccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh-hcchhhhhc
Confidence 0024456677789983 22666665 589999999998764 345667899
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
..|..++|+|+...+|++|+.||.|++||.|.. ..++.++.+|...|++|.|+|....|+.|||.|..|.+|...
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-----k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-----KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCC-----CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 999999999988889999999999999999986 479999999999999999999988888999999999999765
Q ss_pred CCC-----------------------------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccce-eeeEEE
Q 046899 320 KIG-----------------------------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRL-LVCLTM 369 (407)
Q Consensus 320 ~~~-----------------------------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~-i~~~~~ 369 (407)
.-. +++++..|...|++++||.- ..+ .++.|.
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa------------------dPWiFASLSY 351 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA------------------DPWIFASLSY 351 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC------------------CCeeEEEecc
Confidence 322 12234455555666665543 333 458899
Q ss_pred eeeEEEeecc
Q 046899 370 VKVLEIWRMI 379 (407)
Q Consensus 370 d~~i~iwd~~ 379 (407)
||++-|=++.
T Consensus 352 DGRviIs~V~ 361 (370)
T KOG1007|consen 352 DGRVIISSVP 361 (370)
T ss_pred CceEEeecCC
Confidence 9999887765
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=165.50 Aligned_cols=177 Identities=18% Similarity=0.359 Sum_probs=146.9
Q ss_pred CCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-ceeeecccCcceEEEEecCCCCCEEEEEeC
Q 046899 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-AVKVEKAHNADIHCVDWNPHDVNLILTGSA 260 (407)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~ 260 (407)
...+++.++.+|...=+.|+|+|.....|++|..-+.|++|...++... -...+.+|...|-.++|+|....+|++|+.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 3456788889999999999999954346888888889999999887632 123556799999999999988899999999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC---CcccccccCCCcccCC
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI---GEKQDYGELKYPIIHP 337 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~ 337 (407)
||+|+|||+|.... ..++. .++|.+-|+-|.|+.+.. +||+|+.||+++|||+++. +.+..|..|..||+++
T Consensus 279 DgsIrIWDiRs~~~---~~~~~-~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi 353 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPK---KAAVS-TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI 353 (440)
T ss_pred CceEEEEEecCCCc---cceeE-eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence 99999999998321 13333 388999999999999888 7799999999999999864 4456888999999999
Q ss_pred CCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 338 AYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 338 ~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
.|+|.- ...|++++.|..|.|||+.-
T Consensus 354 eW~p~e-----------------~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 354 EWHPHE-----------------DSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred Eecccc-----------------CceEEeccCCCcEEEEEeec
Confidence 998861 55788889999999999963
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.5e-21 Score=158.80 Aligned_cols=230 Identities=14% Similarity=0.162 Sum_probs=169.7
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
.|.. -+|+.|++ .|.+||.|+.||.|.|||+.+...
T Consensus 22 d~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------ 57 (405)
T KOG1273|consen 22 DNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRI------------------------------------------ 57 (405)
T ss_pred cCCc-cceEEecc-CcceeeeeccCCcEEEEEccccch------------------------------------------
Confidence 4444 78999999 999999999999999999987531
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
-+.+.+|..+|.+++|+++| +.|++++.|..|.+||+..+.. ...+. ..+
T Consensus 58 --------------------------ar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~--l~rir-f~s 107 (405)
T KOG1273|consen 58 --------------------------ARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSP--LKRIR-FDS 107 (405)
T ss_pred --------------------------hhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCc--eeEEE-ccC
Confidence 13455789999999999999 8999999999999999998862 22211 111
Q ss_pred ceE-----------------------------------------------EEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 241 DIH-----------------------------------------------CVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 241 ~v~-----------------------------------------------~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
+|+ +..|++ .|+++++|...|.+.++|..+
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t-- 184 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAET-- 184 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecch--
Confidence 111 122445 688999999999999999999
Q ss_pred CCCCCCceeeecCCC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccccee
Q 046899 274 SDGVGSPIHKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLT 352 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 352 (407)
.+++..++-.. ..|.++.++..|+.+ +.-+.|..||.|+++..-.. +.++.+....- +.|+.+....
T Consensus 185 ----~e~vas~rits~~~IK~I~~s~~g~~l-iiNtsDRvIR~ye~~di~~~----~r~~e~e~~~K---~qDvVNk~~W 252 (405)
T KOG1273|consen 185 ----LECVASFRITSVQAIKQIIVSRKGRFL-IINTSDRVIRTYEISDIDDE----GRDGEVEPEHK---LQDVVNKLQW 252 (405)
T ss_pred ----heeeeeeeechheeeeEEEEeccCcEE-EEecCCceEEEEehhhhccc----CccCCcChhHH---HHHHHhhhhh
Confidence 78888887655 789999999999976 58889999999998842111 00111000000 4455555555
Q ss_pred eeeEeeCccceeeeEEEee-eEEEeeccccccCChHHHHHHHhhcccc-eeEeec
Q 046899 353 SIGMHLIHGRLLVCLTMVK-VLEIWRMIDLIYRPEEEVLAELDKFKSH-IFGCDK 405 (407)
Q Consensus 353 ~~~~~~~~~~~i~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~~~~ 405 (407)
+..++++.+.+|++++.-. .++||.-. .|.+++.+.|.++. ..+|+|
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~------~GsLVKILhG~kgE~l~DV~w 301 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKS------IGSLVKILHGTKGEELLDVNW 301 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecC------CcceeeeecCCchhheeeccc
Confidence 5577777789998887433 99999998 78899988888743 345554
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.7e-20 Score=168.96 Aligned_cols=328 Identities=16% Similarity=0.210 Sum_probs=234.3
Q ss_pred cccccCccceEEEEeecccCccc------------CCcceeeE-----------EEeeCCCceEEEEEeCCCCeEEEEee
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEA------------RSPFVKKF-----------KTIIHPGEVNRIRELPQNSKIVATHT 103 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~------------~~~~~~~~-----------~~~~h~~~v~~l~~~~~~~~~l~tg~ 103 (407)
.+++++-|..+|||.....+.+. +.|..... .+.||++-|+++.|+| .+..|++++
T Consensus 208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSAS 286 (764)
T KOG1063|consen 208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSAS 286 (764)
T ss_pred EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecc
Confidence 37889999999999655222110 11221111 2348999999999999 777899999
Q ss_pred CCCcEEEEeCcCCCCc-------ccccCcCC------CCCCC--------CCcEEEEecccc-----ccccccCCCCCcc
Q 046899 104 DSPDVLIWDVEAQPNR-------HAVLGAAD------SHPDL--------DQSVVLWSIQDH-----VSALAAEPGSAKS 157 (407)
Q Consensus 104 ~dg~i~vwd~~~~~~~-------~~~~~~~~------~~~~~--------d~~i~~w~~~~~-----~~~~~~~~~~~~~ 157 (407)
.|.++.+|.-.+..-+ ..+.+... ..++. .|-.++|..... ...+.++.+++..
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~d 366 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKD 366 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccccee
Confidence 9999999987765211 11111110 01111 677888873321 2344556666555
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCc----CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC------
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSI----GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG------ 227 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~------ 227 (407)
+.-.+-...+++.+.|.+-|++-.... ..+..-+-|...++|++|-+.. ..|++|.+...+|+|+....
T Consensus 367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred eeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHH
Confidence 555555567889999999998765411 1233344588899999998864 68999999999999976421
Q ss_pred -------------------------------------C-------------------------------CCceeeecccC
Q 046899 228 -------------------------------------S-------------------------------TPAVKVEKAHN 239 (407)
Q Consensus 228 -------------------------------------~-------------------------------~~~~~~~~~~~ 239 (407)
. .|.+..+.+|.
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 0 01222345788
Q ss_pred cceEEEEecCCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 240 ADIHCVDWNPHDVNLILTGSADN-----SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
..|.+++.+| +++++|+++... .|++|+..+ ...+..+.+|+-.|+.++|+|||++|+ +.|.|+++.
T Consensus 526 yEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~------W~~~~~L~~HsLTVT~l~FSpdg~~LL-svsRDRt~s 597 (764)
T KOG1063|consen 526 YEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN------WLQVQELEGHSLTVTRLAFSPDGRYLL-SVSRDRTVS 597 (764)
T ss_pred eeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc------hhhhheecccceEEEEEEECCCCcEEE-EeecCceEE
Confidence 9999999999 999999987654 589999999 888889999999999999999999885 999999999
Q ss_pred EEeCCCCCcc----cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899 315 IWDHEKIGEK----QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL 390 (407)
Q Consensus 315 vwd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~ 390 (407)
+|........ .....|..-|++..|+|| +.+++++|-|.+|+||...+.. .+.+
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd------------------e~~FaTaSRDK~VkVW~~~~~~----d~~i 655 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD------------------EKYFATASRDKKVKVWEEPDLR----DKYI 655 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcc------------------cceeEEecCCceEEEEeccCch----hhhh
Confidence 9998643322 225678888999999998 7779999999999999998421 1333
Q ss_pred H--HHhhcccceeEeecc
Q 046899 391 A--ELDKFKSHIFGCDKS 406 (407)
Q Consensus 391 ~--~~~~h~~~v~~~~~s 406 (407)
. ....+...|+++++-
T Consensus 656 ~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 656 SRFACLKFSLAVTAVAYL 673 (764)
T ss_pred hhhchhccCCceeeEEee
Confidence 3 344688889998874
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2e-20 Score=169.55 Aligned_cols=267 Identities=13% Similarity=0.185 Sum_probs=205.4
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
-..+|.+|+|+. ..+.||.+-.||.|.+|++...-.... +.++.... -.-..|- ..
T Consensus 24 ~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drs----IE~L~W~------------------e~ 80 (691)
T KOG2048|consen 24 KPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRS----IESLAWA------------------EG 80 (691)
T ss_pred eccceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCc----eeeEEEc------------------cC
Confidence 467899999998 666799999999999999988654433 33322210 0112232 11
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
..+.+.+.+|.|.-||+.++++...+....+.|.+++.+|.+ ..++.|++||.+..++...+.-.....+.-.++
T Consensus 81 ----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 81 ----GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred ----CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 236778889999999999999999999889999999999998 789999999988888887666323334445568
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-------eecC-CCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-------KFEG-HSAAVLCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~ 312 (407)
.|.+++|+| ++..+++|+.||.|++||... +..+. .+.. -..-|++|.|-.++. +++|..-|+
T Consensus 156 RvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~------~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~ 226 (691)
T KOG2048|consen 156 RVLSLSWNP-TGTKIAGGSIDGVIRIWDVKS------GQTLHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSAGT 226 (691)
T ss_pred eEEEEEecC-CccEEEecccCceEEEEEcCC------CceEEEeeecccccccCCceEEEEEEEeecCc--EEEecCCce
Confidence 999999999 889999999999999999998 44444 1111 234589999987775 579999999
Q ss_pred EEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHH
Q 046899 313 LNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAE 392 (407)
Q Consensus 313 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 392 (407)
|++||...+..++.+..|+..|.+++-+++ ++++++++.|+.|.-+......- ++.....
T Consensus 227 V~FWd~~~gTLiqS~~~h~adVl~Lav~~~------------------~d~vfsaGvd~~ii~~~~~~~~~--~wv~~~~ 286 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSCHDADVLALAVADN------------------EDRVFSAGVDPKIIQYSLTTNKS--EWVINSR 286 (691)
T ss_pred EEEEcccCcchhhhhhhhhcceeEEEEcCC------------------CCeEEEccCCCceEEEEecCCcc--ceeeecc
Confidence 999999999999999999999888887776 88999999999888888763211 1233445
Q ss_pred HhhcccceeEeec
Q 046899 393 LDKFKSHIFGCDK 405 (407)
Q Consensus 393 ~~~h~~~v~~~~~ 405 (407)
...|..-|.+++-
T Consensus 287 r~~h~hdvrs~av 299 (691)
T KOG2048|consen 287 RDLHAHDVRSMAV 299 (691)
T ss_pred ccCCcccceeeee
Confidence 5677777777653
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=173.42 Aligned_cols=245 Identities=17% Similarity=0.243 Sum_probs=183.2
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA 126 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 126 (407)
.+.+.+.++.+|+|- -..+...|..... |...|.+++. ...+|++|+.+++|.+|.+.+++....+....
T Consensus 27 fi~tcgsdg~ir~~~---~~sd~e~P~ti~~----~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft 96 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWK---TNSDEEEPETIDI----SGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT 96 (933)
T ss_pred EEEEecCCCceEEee---cCCcccCCchhhc----cCceeEEEee---cccceEEeeccceEEEeeCCCCCccceeeeee
Confidence 367788899999992 2222122222221 7888998884 34589999999999999998876433222111
Q ss_pred CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC
Q 046899 127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206 (407)
Q Consensus 127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 206 (407)
... ...+.......++.|+.|-.|++.+.........+++|.++|.++.|+|.+
T Consensus 97 lp~--------------------------r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 97 LPI--------------------------RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred ccc--------------------------eEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 110 011111222457889999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCceeeecc--------cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 046899 207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKA--------HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG 278 (407)
Q Consensus 207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~ 278 (407)
++||+.+.||.|++||+.++. +..++.+ ....+..++|+| ++..++..+.|+.|++|+... +
T Consensus 151 -~fLAvss~dG~v~iw~~~~~~--~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~------w 220 (933)
T KOG1274|consen 151 -NFLAVSSCDGKVQIWDLQDGI--LSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKG------W 220 (933)
T ss_pred -CEEEEEecCceEEEEEcccch--hhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCC------c
Confidence 899999999999999999876 3333221 145567899999 777777778899999999998 8
Q ss_pred CceeeecC--CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 279 SPIHKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 279 ~~~~~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.+...+.. +...+.+++|+|+|.|| |+++.||.|.|||+++... ......|.+++|-|+
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYI-AASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPN 281 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEE-eeeccCCcEEEEecccchh----ccccceeEEEecCCC
Confidence 88888765 44559999999999987 8999999999999998322 333556777788776
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=167.03 Aligned_cols=293 Identities=18% Similarity=0.259 Sum_probs=188.8
Q ss_pred EEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC
Q 046899 42 CRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN 118 (407)
Q Consensus 42 ~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~ 118 (407)
+.|.| .+++++.|.++++|- .... ...-....+||.+.|.+++|.|.+...|+||+.||.|.|||+.-...
T Consensus 106 l~wapge~~lVsasGDsT~r~Wd---vk~s---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWD---VKTS---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred eccCCCceeEEEccCCceeeeee---eccc---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 34555 478999999999992 2111 11112246799999999999999999999999999999999975431
Q ss_pred cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc---
Q 046899 119 RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED--- 195 (407)
Q Consensus 119 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--- 195 (407)
.. +... ..++++..+.. +. ..+ ...+.+...+.+..
T Consensus 180 d~-~e~~---------~~~~~~~~n~~------pt---------------------psk----p~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 180 DA-LEEF---------DNRIYGRHNTA------PT---------------------PSK----PLKKRIRKWKAASNTIF 218 (720)
T ss_pred hh-HHHH---------hhhhhccccCC------CC---------------------CCc----hhhccccccccccCcee
Confidence 11 0000 00000000000 00 000 00011122223333
Q ss_pred -CEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCC------ceeeeccc---CcceEEEEecCCCCCEEEEEeCCCcE
Q 046899 196 -TVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTP------AVKVEKAH---NADIHCVDWNPHDVNLILTGSADNSI 264 (407)
Q Consensus 196 -~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~------~~~~~~~~---~~~v~~l~~~~~~~~~l~tg~~dg~i 264 (407)
.|+.+.| .|. ..||+++. |+.|++||+++.... ....+..| .-.+.++..+. .|.+|++.+.|+.|
T Consensus 219 ssvTvv~f-kDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 219 SSVTVVLF-KDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSI 295 (720)
T ss_pred eeeEEEEE-ecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcE
Confidence 3555655 445 57888887 999999999986521 11112223 23567788777 66777777779999
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCC--EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-cccccCCCcccCCCCcC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-QDYGELKYPIIHPAYSS 341 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~--v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~ 341 (407)
++|+++... -.++..+.++-.. -..-..+|++.++ ++|+.|....+|.+.+.+.. ..+.+|...|+.++|.|
T Consensus 296 y~ynm~s~s----~sP~~~~sg~~~~sf~vks~lSpd~~~l-~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 296 YFYNMRSLS----ISPVAEFSGKLNSSFYVKSELSPDDCSL-LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred EEEeccccC----cCchhhccCcccceeeeeeecCCCCceE-eccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 999999865 4566666654322 1222468999987 59999999999999987665 45678888888888866
Q ss_pred cchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc--------cCChHHHHHHHhhcccceeEeecc
Q 046899 342 DMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI--------YRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
. +...|++++.|.+++||++.... +....+.+..+.+|...|..|.++
T Consensus 371 S-----------------~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss 426 (720)
T KOG0321|consen 371 S-----------------ATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSS 426 (720)
T ss_pred c-----------------cCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcccccccccccc
Confidence 4 35677788999999999995422 122345566778887777666554
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=5.3e-21 Score=159.18 Aligned_cols=271 Identities=16% Similarity=0.198 Sum_probs=186.0
Q ss_pred eCCCceEEEEEeC----CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 81 IHPGEVNRIRELP----QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 81 ~h~~~v~~l~~~~----~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
.|..+|..++|.+ .....+||.+.+ .+.+|+....--...++.....-.+..-.-.-|-....
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~------------ 102 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN------------ 102 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC------------
Confidence 5888999999985 356688888874 89999987654333333222221111112222322211
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee-
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE- 235 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 235 (407)
.-+..+++++.-|.|++.|..+++....+.+|...|+.|.++|..+++++++|.|..|++|++++.. ++..+
T Consensus 103 -----~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfG 175 (385)
T KOG1034|consen 103 -----TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFG 175 (385)
T ss_pred -----CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEec
Confidence 0134567788899999999999999999999999999999999999999999999999999999988 55544
Q ss_pred --cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC------------CCCC-------Ccee---eecCCCCCE
Q 046899 236 --KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS------------DGVG-------SPIH---KFEGHSAAV 291 (407)
Q Consensus 236 --~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~------------~~~~-------~~~~---~~~~h~~~v 291 (407)
.+|...|.+++|++ ++.+|++++.|.++++|++....- ++.. .++- +-.-|...|
T Consensus 176 G~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 57999999999999 999999999999999999973220 0000 0111 222378888
Q ss_pred EEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCCCCcCcchhccccce-eeeeEeeCccceeeeEEE
Q 046899 292 LCVQWSPDKSSVFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHPAYSSDMLDIETKLL-TSIGMHLIHGRLLVCLTM 369 (407)
Q Consensus 292 ~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 369 (407)
-|++|- |.++| |-|.++.|..|-....+ .+..........+-+. -.+.+...+ .=.|.+..+...|+.|..
T Consensus 255 DCvrw~--gd~il-SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~----~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFIL-SKSCENAIVCWKPGKLEESIHNVKPPESATTILG----EFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhhee-ecccCceEEEEecchhhhhhhccCCCccceeeee----EeccCccceEEEEEeecHHHHHHhhccC
Confidence 899885 46564 88889999999884322 2121111111110000 011111111 224777788999999999
Q ss_pred eeeEEEeecc
Q 046899 370 VKVLEIWRMI 379 (407)
Q Consensus 370 d~~i~iwd~~ 379 (407)
.|.|.+||+.
T Consensus 328 ~g~v~vwdL~ 337 (385)
T KOG1034|consen 328 SGKVYVWDLD 337 (385)
T ss_pred CCcEEEEECC
Confidence 9999999997
No 153
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.5e-20 Score=153.22 Aligned_cols=247 Identities=11% Similarity=0.150 Sum_probs=180.5
Q ss_pred EEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC
Q 046899 41 SCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP 117 (407)
Q Consensus 41 s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 117 (407)
++.|.| .+..+++|+..++| +.+.......+.|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlY---------dv~~~~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLY---------DVPANSLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEE---------eccchhhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCc
Confidence 445654 57778899999999 223334555667999999999986 4578999999999999999875
Q ss_pred CcccccCcCCCCCCC--------------CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899 118 NRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS 183 (407)
Q Consensus 118 ~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 183 (407)
... +..|...+.++ |++|++||.............. +..+.......++.|+.+..+.+||+.+
T Consensus 87 ~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 87 EDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred cee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEeccCCEEEEeecCceEEEEEccc
Confidence 432 22233322222 9999999998743333332222 3333344456788899999999999988
Q ss_pred cCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--CCceeeecccC---------cceEEEEecCC
Q 046899 184 IGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS--TPAVKVEKAHN---------ADIHCVDWNPH 250 (407)
Q Consensus 184 ~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~---------~~v~~l~~~~~ 250 (407)
........ .-.-.+.|+++.|.+ .=+++++-||.|.+=.++... ......+..|. -+|++|+|+|
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp- 242 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP- 242 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-
Confidence 76544222 234578999999976 458888999999886666541 11233445553 3799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
--..||||+.||.|.+||+.+ .+.+..+......|.+++|+.+|.. ||.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~------rKrl~q~~~~~~SI~slsfs~dG~~-LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFN------RKRLKQLAKYETSISSLSFSMDGSL-LAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcc------hhhhhhccCCCCceEEEEeccCCCe-EEEEec
Confidence 688999999999999999999 7888888877788999999999995 477763
No 154
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=2.3e-19 Score=166.93 Aligned_cols=269 Identities=17% Similarity=0.258 Sum_probs=195.3
Q ss_pred eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc--ccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899 75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR--HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152 (407)
Q Consensus 75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~ 152 (407)
.+.....-..+|.++.|+|.++++||.|..+|+|.+||+..+... ..+..+....+. .....+|..+.
T Consensus 234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~-~v~~vvW~~~~--------- 303 (555)
T KOG1587|consen 234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE-PVTAVVWLQNE--------- 303 (555)
T ss_pred CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc-CeEEEEEeccC---------
Confidence 344444578899999999999999999999999999999987652 222211111111 34556665432
Q ss_pred CCCcccccCCCCCccccccCCCCCCCCCCCCcCc-eeeE-----e------ecccCEEEEEECCCCCcEEEEEeCCCcEE
Q 046899 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-RGKY-----L------GHEDTVEDVQFCPSSAQEFCSVGDDSCLI 220 (407)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~-----~------~~~~~v~~l~~~~~~~~~l~s~~~dg~i~ 220 (407)
.+..+++++.||.|..|++..... .... . .....+++++|.+..++.|+.|+++|.|.
T Consensus 304 ----------~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 304 ----------HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred ----------CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 113467778899999997754332 1111 1 12347899999999999999999999988
Q ss_pred EEEcCCCCCC------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC-CCCCCCCCCceeeecCCCCCEEE
Q 046899 221 LWDARSGSTP------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR-KLTSDGVGSPIHKFEGHSAAVLC 293 (407)
Q Consensus 221 iwd~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~h~~~v~~ 293 (407)
--+-...+.. .......|.++|+++.++|.....|++++ |.++++|... . ..|+..+..+...|++
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~------~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI------ASPLLSLDSSPDYVTD 446 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC------CCcchhhhhccceeee
Confidence 7433222211 13355678899999999998888888887 9999999988 4 6888888888889999
Q ss_pred EEEcCCCCCEEEEeeCCCeEEEEeCCCCCc--ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee
Q 046899 294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGE--KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK 371 (407)
Q Consensus 294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 371 (407)
++|||..+.+|+++..||.|.+||+..... ..+........+.+.+++. +..|++|...|
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~------------------g~~lavGd~~G 508 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN------------------GKLLAVGDANG 508 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCC------------------CcEEEEecCCC
Confidence 999999999999999999999999986432 3333333344444555444 78899999999
Q ss_pred eEEEeeccccccCChHH
Q 046899 372 VLEIWRMIDLIYRPEEE 388 (407)
Q Consensus 372 ~i~iwd~~~~~~~~~~~ 388 (407)
++++|++.+....+.++
T Consensus 509 ~~~~~~l~~~l~~~~~~ 525 (555)
T KOG1587|consen 509 TTHILKLSESLAVPSPN 525 (555)
T ss_pred cEEEEEcCchhhccCcc
Confidence 99999998766555543
No 155
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=6.4e-19 Score=154.68 Aligned_cols=257 Identities=20% Similarity=0.266 Sum_probs=186.9
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-------------CCcEEEEecccc-cc--c
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------DQSVVLWSIQDH-VS--A 147 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------d~~i~~w~~~~~-~~--~ 147 (407)
.-|.|++|.+ +++ ++||.++|.|.||+..+.+..+....|...+-.+ |+.|..||-+=. .+ .
T Consensus 247 k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccccccccc
Confidence 6799999998 765 7799999999999998776655555555444332 889999983211 11 2
Q ss_pred cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 046899 148 LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG 227 (407)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 227 (407)
+....+.+..++.+.-+ +..|.....|..=.++.+ ......+|......++.+|+. ++|++++.|+.+++|+ ..
T Consensus 325 lPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~-f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~ 398 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENG-FTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DH 398 (626)
T ss_pred CchhcCCeeEEecCCCc--EEEeeccceEEEeeecCC-ceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--CC
Confidence 22223334444444433 444444444433233322 234456899999999999998 8999999999999999 22
Q ss_pred CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899 228 STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307 (407)
Q Consensus 228 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~ 307 (407)
+ ...+ ..-..++.|+.|+| .+ .+|.|...|...+.|.++ ...+..-.. ..++++++|+|+|.++ |.|
T Consensus 399 k--~~wt-~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~------~~lv~~~~d-~~~ls~v~ysp~G~~l-Avg 465 (626)
T KOG2106|consen 399 K--LEWT-KIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET------QDLVTIHTD-NEQLSVVRYSPDGAFL-AVG 465 (626)
T ss_pred c--eeEE-EEecCceeEeeccC-cc-eEEEeeccceEEEEeccc------ceeEEEEec-CCceEEEEEcCCCCEE-EEe
Confidence 3 2332 23456788999999 66 999999999999999998 445544444 8899999999999965 899
Q ss_pred eCCCeEEEEeCCCCCcccccc--cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 308 AEDGILNIWDHEKIGEKQDYG--ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 308 ~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+.|+.|.+|-+...+...... .+..+|+.+.||+| +.++.+-+.|-.|-.|...
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D------------------s~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD------------------SQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC------------------CceEEeccCceEEEEEccc
Confidence 999999999998766543322 24589999999999 8888888999999999543
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=3.3e-19 Score=162.03 Aligned_cols=342 Identities=14% Similarity=0.186 Sum_probs=214.1
Q ss_pred eEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899 40 LSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 40 ~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 116 (407)
..+.|.|+ +.+.++.+..++|- ..+...........||.+.|..+.|.| .|++|++.+.|.+-|++---..
T Consensus 320 ~g~lw~~n~~~ii~~g~~Gg~hlWk-----t~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 320 WGGLWSPNSNVIIAHGRTGGFHLWK-----TKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred eeEEEcCCCCEEEEecccCcEEEEe-----ccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccc
Confidence 45677775 45566677788883 122222333445558999999999999 8889999999999999865421
Q ss_pred CC----cccccCcCC-------------CCCCC-CCcEEEEecccccc----cccc--------CCCCCcccccCCCCCc
Q 046899 117 PN----RHAVLGAAD-------------SHPDL-DQSVVLWSIQDHVS----ALAA--------EPGSAKSTASGGANSK 166 (407)
Q Consensus 117 ~~----~~~~~~~~~-------------~~~~~-d~~i~~w~~~~~~~----~~~~--------~~~~~~~~~~~~~~~~ 166 (407)
+. +...+-|.. ++... ...+++++...... .+.. .+.+....+.|--+..
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 10 011111111 11111 44567776554310 0111 1111222222211111
Q ss_pred ccc-ccCCCCC--------------CCCCCCC---------cCceeeEeecccCEEEEEECCCCCcEEEEEeCC-----C
Q 046899 167 NAS-KSGGNGD--------------KPLESPS---------IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-----S 217 (407)
Q Consensus 167 ~~~-~~~~~~i--------------~i~d~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-----g 217 (407)
..- -..+|.. .+...+. .-.++.+-+|...|++++.+|++ +++|++... .
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehA 552 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHA 552 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccce
Confidence 111 1111111 0011010 11234556899999999999999 899998764 4
Q ss_pred cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899 218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297 (407)
Q Consensus 218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 297 (407)
.|++|+..+-. ....+.+|.-.|+.++|+| |+++|++.+.|.++.+|........ .......+.|+.-|++..|+
T Consensus 553 vI~lw~t~~W~--~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~--e~~fa~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 553 VIRLWNTANWL--QVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKD--EFRFACLKAHTRIIWDCSWS 627 (764)
T ss_pred EEEEEeccchh--hhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccch--hhhhccccccceEEEEcccC
Confidence 58999988776 5667889999999999999 9999999999999999998653211 11233467899999999999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCC--Ccccc--cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899 298 PDKSSVFGSSAEDGILNIWDHEKI--GEKQD--YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL 373 (407)
Q Consensus 298 ~~~~~ll~s~~~d~~i~vwd~~~~--~~~~~--~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i 373 (407)
|++.+ |||+|.|++|++|..... +.+.. ...++.+|+.+++.+- .+...+..|+.|-..|.|
T Consensus 628 pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~-------------~~~e~~~~vavGle~GeI 693 (764)
T KOG1063|consen 628 PDEKY-FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV-------------DHNEKGDVVAVGLEKGEI 693 (764)
T ss_pred cccce-eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecc-------------ccccccceEEEEecccEE
Confidence 99998 589999999999999876 44433 3346777888877442 122224467889999999
Q ss_pred EEeeccc------cccCChHHHHHHHhhcccceeEeeccC
Q 046899 374 EIWRMID------LIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 374 ~iwd~~~------~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.||.... ...-.....+....+|...|+-+.|+|
T Consensus 694 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p 733 (764)
T KOG1063|consen 694 VLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRP 733 (764)
T ss_pred EEEecccccccccceeeeeccccccccChHHhhheeEecc
Confidence 9999641 000001111223445667777777764
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=155.49 Aligned_cols=232 Identities=13% Similarity=0.199 Sum_probs=184.3
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG 162 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 162 (407)
.+.|++|.|+| ...+|++++.||+++||.++....
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N-------------------------------------------- 247 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVN-------------------------------------------- 247 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccC--------------------------------------------
Confidence 37899999999 888999999999999999875421
Q ss_pred CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC-cc
Q 046899 163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN-AD 241 (407)
Q Consensus 163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~ 241 (407)
..++.+.--..+|.+.+|.|+|...+++++.-..++.||+.+.+...+....++. ..
T Consensus 248 ----------------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 248 ----------------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred ----------------------hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 1223333345689999999999558999999999999999988744444444554 35
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
+.....+| ++++|+..+..|.|.+....+ ++.+.+++ ..+.|..++|+.+++.|+ .++.+|.|.+||++..
T Consensus 306 ~e~FeVSh-d~~fia~~G~~G~I~lLhakT------~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 306 MERFEVSH-DSNFIAIAGNNGHIHLLHAKT------KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQN 376 (514)
T ss_pred hheeEecC-CCCeEEEcccCceEEeehhhh------hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCc
Confidence 66788899 999999999999999999998 88898888 478999999999999886 5555899999999998
Q ss_pred CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccccee
Q 046899 322 GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIF 401 (407)
Q Consensus 322 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 401 (407)
.++..+...+. |.+.. ++..-++.++++||..|.|.|||.++-.-....+++..+..-...|+
T Consensus 377 ~~~~rf~D~G~-v~gts----------------~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It 439 (514)
T KOG2055|consen 377 SCLHRFVDDGS-VHGTS----------------LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT 439 (514)
T ss_pred ceEEEEeecCc-cceee----------------eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence 77777654322 22211 22233488999999999999999876666667788999999999999
Q ss_pred EeeccC
Q 046899 402 GCDKSC 407 (407)
Q Consensus 402 ~~~~s~ 407 (407)
++.|++
T Consensus 440 sl~Fn~ 445 (514)
T KOG2055|consen 440 SLQFNH 445 (514)
T ss_pred eeeeCc
Confidence 999984
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=3.5e-19 Score=144.16 Aligned_cols=279 Identities=12% Similarity=0.144 Sum_probs=184.8
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC-cCCCCCCC-------------CCcEEEEec
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG-AADSHPDL-------------DQSVVLWSI 141 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~-------------d~~i~~w~~ 141 (407)
.+.+.+|.+.|+++.|-. ++ +|.+|..-|.|.+|++++......+.. +...+... |..+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 344558999999999865 44 588999999999999999876655542 22222111 889999998
Q ss_pred ccccccc--ccCCCCCccc-----ccCCCCCccccccC--CCCCCCCCCCCcCceeeEe----ecccCEEEEEECCC-C-
Q 046899 142 QDHVSAL--AAEPGSAKST-----ASGGANSKNASKSG--GNGDKPLESPSIGARGKYL----GHEDTVEDVQFCPS-S- 206 (407)
Q Consensus 142 ~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~-~- 206 (407)
....... ....+...|. +.++....+...-. .....+-|......++... +..+.+.|..+.-. +
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 7631100 0001111111 11111111111111 1112223332222222221 23467777775332 2
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCC--------CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 046899 207 AQEFCSVGDDSCLILWDARSGST--------PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG 278 (407)
Q Consensus 207 ~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~ 278 (407)
.-++++|-++|.+.+||+.++.. +.......|..+|.++.+.+ .-..=++|+.+..+.+|++.... +..
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~--gsl 241 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHST--GSL 241 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeecccc--Ccc
Confidence 13577788899999999998631 12334457899999999988 43444677888889999887532 002
Q ss_pred CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEee
Q 046899 279 SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHL 358 (407)
Q Consensus 279 ~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~ 358 (407)
+...++.-.+..|..+..-||++ ++||++.|+.||||..++...+..+..|...|.+++|+||
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd---------------- 304 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD---------------- 304 (323)
T ss_pred cccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC----------------
Confidence 22233333456789999999999 7899999999999999999999999999999999999999
Q ss_pred CccceeeeEEEeeeEEEeec
Q 046899 359 IHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 359 ~~~~~i~~~~~d~~i~iwd~ 378 (407)
.+.+++++.|++|-+|++
T Consensus 305 --~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 --CELMAAASKDARISLWKL 322 (323)
T ss_pred --CchhhhccCCceEEeeec
Confidence 788999999999999986
No 159
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=4.2e-19 Score=155.70 Aligned_cols=252 Identities=12% Similarity=0.191 Sum_probs=199.1
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc--ccCc
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA--VLGA 125 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~--~~~~ 125 (407)
+.|++ .+-+++|. .....+..+........-...|+++..+| +++-|++|+.-.++.|||+......-. +...
T Consensus 434 VyTgG-kgcVKVWd---is~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltss 508 (705)
T KOG0639|consen 434 VYTGG-KGCVKVWD---ISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS 508 (705)
T ss_pred eEecC-CCeEEEee---ccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCc
Confidence 44444 33588993 33333333343444444677899999999 899999999999999999987643322 1111
Q ss_pred C------CCCC--------CCCCcEEEEecccc--ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee
Q 046899 126 A------DSHP--------DLDQSVVLWSIQDH--VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK 189 (407)
Q Consensus 126 ~------~~~~--------~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 189 (407)
. ...+ ..||.|.+||+.+. .+.+..+.++..++........+-+|+-|.+++-||+..++.++.
T Consensus 509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 0 0111 11999999999877 567889999998888888888999999999999999999887766
Q ss_pred EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
.. ....|.++.++|++ .+++.|.+++.+.+-.....+ ...+.-|.+.|.++.|.+ .|+++++.+.|..+..|.+
T Consensus 589 hd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 589 HD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred hh-hhhhheecccCCCc-cceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecc-cCceeeecCchhhhhhccC
Confidence 53 56789999999999 899999999999998877655 445567899999999999 9999999999999999988
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
-. +..+...+. ..+|.+...+.|.++| +||+.|+...||.+
T Consensus 663 Py------GasiFqskE-~SsVlsCDIS~ddkyI-VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 663 PY------GASIFQSKE-SSSVLSCDISFDDKYI-VTGSGDKKATVYEV 703 (705)
T ss_pred cc------ccceeeccc-cCcceeeeeccCceEE-EecCCCcceEEEEE
Confidence 77 888888874 6789999999999976 79999999998875
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=145.73 Aligned_cols=283 Identities=13% Similarity=0.179 Sum_probs=183.8
Q ss_pred eeEEEEe---ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC
Q 046899 39 SLSCRWG---PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA 115 (407)
Q Consensus 39 ~~s~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 115 (407)
..+|+|. ..++.|+.+|.+-|| ++..-. ....+.+|-.+|.+++|++ +|+.|+|++.|..|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~---D~~T~~-----iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIY---DFDTFR-----IARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEE---Eccccc-----hhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccC
Confidence 3455554 479999999999999 332221 1222337999999999999 999999999999999999999
Q ss_pred CCCcccccCcCC-----CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899 116 QPNRHAVLGAAD-----SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY 190 (407)
Q Consensus 116 ~~~~~~~~~~~~-----~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 190 (407)
+.++..+.-... ..|..+....+--++.....+.+........+ ...++.
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp----------~d~d~d--------------- 151 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP----------KDDDGD--------------- 151 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc----------CCCccc---------------
Confidence 886655432111 00000111111111111111111110000000 000000
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC-cceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN-ADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
-.....+..|.+.| +++++|...|.+.++|..+.+ ++..++-.. ..|..+.++. .++.|++-+.|..||.|++
T Consensus 152 --ln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e--~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 152 --LNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLE--CVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred --cccccccccccCCC-CEEEEecCcceEEEEecchhe--eeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEeh
Confidence 01111233688888 899999999999999999887 566655554 7899999988 9999999999999999998
Q ss_pred CCCC---CCCCCCceeeecC--CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCC-CcccCCCCcCcc
Q 046899 270 RKLT---SDGVGSPIHKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK-YPIIHPAYSSDM 343 (407)
Q Consensus 270 ~~~~---~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~ 343 (407)
+... +++..++.+.++. ...+-.++.|+.+|.|++|+......+.+|.-..+..++.+.+.. .....+.|.|-
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~- 304 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV- 304 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc-
Confidence 7422 2222333344332 234556788999999998888888999999999999999988876 44555666543
Q ss_pred hhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
...|++- ..|.|+||....
T Consensus 305 -----------------rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 305 -----------------RPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred -----------------eeeeeec-cCCceEEEEeec
Confidence 3334444 677999998753
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=2.3e-19 Score=149.51 Aligned_cols=249 Identities=20% Similarity=0.362 Sum_probs=180.9
Q ss_pred cCCCeeEEEE-------eecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCc
Q 046899 35 LVWPSLSCRW-------GPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPD 107 (407)
Q Consensus 35 ~~~p~~s~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~ 107 (407)
.+-..+.|.| .|.++.+++-+.+|++ ++... .-.-...+|.+.|+.|+++|.+.+++++++.|.+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVi---d~~~~-----~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s 159 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVI---DVVSG-----QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS 159 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEE---ecchh-----hhccceeccCccchhhhcCCCCCcEEEEecCCce
Confidence 3445567777 4667888888999998 11111 1133455899999999999999999999999999
Q ss_pred EEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce
Q 046899 108 VLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR 187 (407)
Q Consensus 108 i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 187 (407)
||+|++++..++..+-
T Consensus 160 vRlwnI~~~~Cv~VfG---------------------------------------------------------------- 175 (385)
T KOG1034|consen 160 VRLWNIQTDVCVAVFG---------------------------------------------------------------- 175 (385)
T ss_pred EEEEeccCCeEEEEec----------------------------------------------------------------
Confidence 9999999876654431
Q ss_pred eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--------------------------CceeeecccCcc
Q 046899 188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--------------------------PAVKVEKAHNAD 241 (407)
Q Consensus 188 ~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~~~~ 241 (407)
-+.+|.+.|.++.|++++ ..+++++.|.+|++|++...+. |...+-..|...
T Consensus 176 -G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 176 -GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred -ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 234799999999999999 7999999999999999984320 011122346677
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC--------CCCCCceeeecCCCCCEEEEEE--cCCCCCEEEEeeCCC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS--------DGVGSPIHKFEGHSAAVLCVQW--SPDKSSVFGSSAEDG 311 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~--~~~~~~ll~s~~~d~ 311 (407)
|-|+.|- ++++++-+-++.|..|..-...+ ++....+.++.-....|+-+.| .|-++. ||.|...|
T Consensus 254 VDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~-la~gnq~g 329 (385)
T KOG1034|consen 254 VDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM-LALGNQSG 329 (385)
T ss_pred HHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH-HhhccCCC
Confidence 7777774 57899999999999998732211 1112334455545556666655 566774 58999999
Q ss_pred eEEEEeCCCCCccc--cc--ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 312 ILNIWDHEKIGEKQ--DY--GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 312 ~i~vwd~~~~~~~~--~~--~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.|.+||++...... ++ ......|...+||.| +..|+..+.|++|.-||..
T Consensus 330 ~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d------------------gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD------------------GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEECCCCCCccCceEEeccccceeeeeeeccc------------------CcEEEEEeCCCcEEEEEee
Confidence 99999999876642 11 223456788888888 8889999999999999864
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.1e-18 Score=152.77 Aligned_cols=260 Identities=13% Similarity=0.144 Sum_probs=183.1
Q ss_pred CCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 36 VWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 36 ~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
|-+..+..+.. .++.+..++.+.||... .....+.+-..+-.+.|.+++|.+ ++ .|.+.+.+|+|.-||
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~------~~w~~~~vi~g~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLS------NNWFLEPVIHGPEDRSIESLAWAE-GG-RLFSSGLSGSITEWD 96 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccC------CCceeeEEEecCCCCceeeEEEcc-CC-eEEeecCCceEEEEe
Confidence 33444444432 47788889999999332 233333333334568899999995 55 577888889999999
Q ss_pred CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee--eE
Q 046899 113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG--KY 190 (407)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~ 190 (407)
+.+.+....+..... .+|.+. .......++.++.+|.+..++...++... .+
T Consensus 97 l~~lk~~~~~d~~gg---------~IWsia-----------------i~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l 150 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGG---------AIWSIA-----------------INPENTILAIGCDDGVLYDFSIGPDKITYKRSL 150 (691)
T ss_pred cccCceeEEecCCCc---------ceeEEE-----------------eCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence 999877666544322 356543 12222456667788866666655554432 23
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cc----cCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KA----HNADIHCVDWNPHDVNLILTGSADNSI 264 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~----~~~~v~~l~~~~~~~~~l~tg~~dg~i 264 (407)
.-.++.|.+++|+|++ ..+++|+.||.|++||..+++...+... .. ...-|+++.+-. ...+++|..-|+|
T Consensus 151 ~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V 227 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTV 227 (691)
T ss_pred ccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceE
Confidence 3457899999999999 7799999999999999998873221111 11 233577777765 4689999999999
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc----ccccccCCCcccCCCC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE----KQDYGELKYPIIHPAY 339 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~ 339 (407)
.+||... +.++..+..|.+-|.+++..+++.+++ +++.|+.|..+...+.+. ......|...+.+++.
T Consensus 228 ~FWd~~~------gTLiqS~~~h~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 228 TFWDSIF------GTLIQSHSCHDADVLALAVADNEDRVF-SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred EEEcccC------cchhhhhhhhhcceeEEEEcCCCCeEE-EccCCCceEEEEecCCccceeeeccccCCcccceeeee
Confidence 9999999 999999999999999999999999886 888999999998877544 1222345555555555
No 163
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=8.6e-19 Score=157.01 Aligned_cols=249 Identities=11% Similarity=0.086 Sum_probs=164.9
Q ss_pred CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCC
Q 046899 96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNG 175 (407)
Q Consensus 96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (407)
++++++++.|+.|++||+.+++....+..+... ....+.+.+.. .++++..++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~------------------------~~l~~~~dg~~--l~~~~~~~~~ 54 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRP------------------------RGITLSKDGKL--LYVCASDSDT 54 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCC------------------------CceEECCCCCE--EEEEECCCCe
Confidence 357899999999999999887655544332111 01111112211 1244567788
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI 255 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 255 (407)
+.+||..+++....+..+.. +..++|+|++..++++++.|+.|++||+++.+ ....+. +...+.+++|+| ++.++
T Consensus 55 v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~-~~~~~~~~~~~~-dg~~l 129 (300)
T TIGR03866 55 IQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIP-VGVEPEGMAVSP-DGKIV 129 (300)
T ss_pred EEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEee-CCCCcceEEECC-CCCEE
Confidence 99999998887776654433 56889999984455566678999999998765 344432 334568899999 88999
Q ss_pred EEEeCCC-cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCC---
Q 046899 256 LTGSADN-SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK--- 331 (407)
Q Consensus 256 ~tg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~--- 331 (407)
+++..++ .+.+||.++ ++....+.. ...+.+++|+|+++++++++..++.|++||+++++.+..+..+.
T Consensus 130 ~~~~~~~~~~~~~d~~~------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 202 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKT------YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV 202 (300)
T ss_pred EEEecCCCeEEEEeCCC------CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc
Confidence 9888765 567789887 555554432 33457899999999887677779999999999877665543211
Q ss_pred --C--cccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899 332 --Y--PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 332 --~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
. ...++.|+|| +..++ +...++.|.+||+. +++.+..+ .+...+.+++|+
T Consensus 203 ~~~~~~~~~i~~s~d------------------g~~~~~~~~~~~~i~v~d~~------~~~~~~~~-~~~~~~~~~~~~ 257 (300)
T TIGR03866 203 HPEAVQPVGIKLTKD------------------GKTAFVALGPANRVAVVDAK------TYEVLDYL-LVGQRVWQLAFT 257 (300)
T ss_pred ccccCCccceEECCC------------------CCEEEEEcCCCCeEEEEECC------CCcEEEEE-EeCCCcceEEEC
Confidence 1 1223455555 55433 33445689999997 44443322 234468888887
Q ss_pred C
Q 046899 407 C 407 (407)
Q Consensus 407 ~ 407 (407)
+
T Consensus 258 ~ 258 (300)
T TIGR03866 258 P 258 (300)
T ss_pred C
Confidence 5
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=145.08 Aligned_cols=272 Identities=16% Similarity=0.194 Sum_probs=181.5
Q ss_pred eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCC
Q 046899 97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGD 176 (407)
Q Consensus 97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (407)
..+|++-..|.|++||..++..+..+.++.... ..+++-+-. -...+.+++.||+|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~----N~vrf~~~d--------------------s~h~v~s~ssDG~V 96 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATT----NGVRFISCD--------------------SPHGVISCSSDGTV 96 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcc----cceEEecCC--------------------CCCeeEEeccCCeE
Confidence 578899999999999999988888877765542 233332221 12336678889999
Q ss_pred CCCCCCCcCceeeE--eecc-cCEEEEEECCCCCcEEEEEeC----CCcEEEEEcCCCCCCceeeecccCcceEEEEecC
Q 046899 177 KPLESPSIGARGKY--LGHE-DTVEDVQFCPSSAQEFCSVGD----DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249 (407)
Q Consensus 177 ~i~d~~~~~~~~~~--~~~~-~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~ 249 (407)
++||+........+ .++. .+..|++.+-.+ +++++|++ |-.|.+||+|..+++...-...|...|++++|+|
T Consensus 97 r~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 97 RLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 99998876655443 3444 467788877566 68888864 6789999999988655556678999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC-CCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK-SSVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 250 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
.++++|++|+.||.|.+||+....++ ..++.++ .|...|.++.|+.++ +.|+ +-+...+..+|+++.+.....++
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~Ee--DaL~~vi-N~~sSI~~igw~~~~ykrI~-clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEE--DALLHVI-NHGSSIHLIGWLSKKYKRIM-CLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcch--hhHHHhh-cccceeeeeeeecCCcceEE-EEEccCceeEEEccCCChhhccc
Confidence 99999999999999999999875331 2334444 478889999999887 2364 78889999999999887665554
Q ss_pred cCCCcccCCCCcCcchh-ccccceeeeeEe-eCccc-eeeeEEEeeeEEEeeccccccCChHHHHHHHhh-cccceeEee
Q 046899 329 ELKYPIIHPAYSSDMLD-IETKLLTSIGMH-LIHGR-LLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK-FKSHIFGCD 404 (407)
Q Consensus 329 ~~~~~v~~~~~s~d~~~-~~~~~~~~~~~~-~~~~~-~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~~~ 404 (407)
...-. +.. .+- .....+ +-.+ .+... ..+.|...++..++-+.+..-......+..++| |...|.++.
T Consensus 252 ~~~~~-----~~d-~r~~~~~dY~--I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~ 323 (376)
T KOG1188|consen 252 NPDVS-----ADD-LRKEDNCDYV--INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDIL 323 (376)
T ss_pred Cccch-----hhh-HHhhhhhhhe--eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHh
Confidence 32111 000 000 000001 0111 11122 233444355666666554333445566677776 666666655
Q ss_pred c
Q 046899 405 K 405 (407)
Q Consensus 405 ~ 405 (407)
|
T Consensus 324 ~ 324 (376)
T KOG1188|consen 324 F 324 (376)
T ss_pred h
Confidence 4
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=3.3e-18 Score=154.20 Aligned_cols=147 Identities=18% Similarity=0.363 Sum_probs=121.9
Q ss_pred ccCCCCCCCCCCCCcCce-----eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-----CceeeecccC
Q 046899 170 KSGGNGDKPLESPSIGAR-----GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKAHN 239 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~ 239 (407)
.+..|.|-|+++.....+ ..+ -....|+.+.|+|.+...|+.++.||.|++|.+..+.. .....+..|.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 445677777776543221 111 13467999999998888999999999999999876531 2456678999
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
..|+++.|+|.-.+.|+++++|-+|++||+++ ++....+.+|.+.|.+++|+|+|+.+ ||.+.||+|++|+.+
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~------~~~~~~l~gHtdqIf~~AWSpdGr~~-AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLAN------AKLYSRLVGHTDQIFGIAWSPDGRRI-ATVCKDGTLRVYEPR 750 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhh------hhhhheeccCcCceeEEEECCCCcce-eeeecCceEEEeCCC
Confidence 99999999998889999999999999999999 88889999999999999999999965 899999999999999
Q ss_pred CCCcc
Q 046899 320 KIGEK 324 (407)
Q Consensus 320 ~~~~~ 324 (407)
+.+..
T Consensus 751 s~e~p 755 (1012)
T KOG1445|consen 751 SREQP 755 (1012)
T ss_pred CCCCc
Confidence 86543
No 166
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=149.61 Aligned_cols=279 Identities=17% Similarity=0.238 Sum_probs=196.4
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC-cCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG-AADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
.++.+|.|.|+.|.|+. .|..|++|+.|..|.+||..++.....+.+ |...+ + ..
T Consensus 136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~Nv---------f--------------Qa 191 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNV---------F--------------QA 191 (559)
T ss_pred hcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccch---------h--------------hh
Confidence 35557999999999987 899999999999999999998776554432 22211 0 00
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcC---ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIG---ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 232 (407)
+|++.. .+..++..+.+|.+++-.+.... ....+..|.++|..++..|..+..|.+++.|+.+.-+|+++......
T Consensus 192 KFiP~s-~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 192 KFIPFS-GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred hccCCC-CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 122221 12345666777777764433222 23445579999999999999999999999999999999998764323
Q ss_pred eeeccc-Cc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC------CCCEEEEEEcCCCCC
Q 046899 233 KVEKAH-NA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH------SAAVLCVQWSPDKSS 302 (407)
Q Consensus 233 ~~~~~~-~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h------~~~v~~v~~~~~~~~ 302 (407)
.....+ .. ....++.+|-+.+.+++|+.|..+++||.+.....+...++..+..| .-.|++++|+.++.-
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 333333 33 46789999977789999999999999999986543333334444332 346999999988777
Q ss_pred EEEEeeCCCeEEEEeCCCCCc-------------ccccccCCCc--ccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899 303 VFGSSAEDGILNIWDHEKIGE-------------KQDYGELKYP--IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL 367 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~~~~~-------------~~~~~~~~~~--v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~ 367 (407)
|+| +-.|-.|.++.-..+.- .+.+.+|... |-++ -.+.+..++|++|
T Consensus 351 lLa-SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV-----------------NFfGPrsEyVvSG 412 (559)
T KOG1334|consen 351 LLA-SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV-----------------NFFGPRSEYVVSG 412 (559)
T ss_pred eee-eecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee-----------------eeccCccceEEec
Confidence 874 45578899995332111 1124444432 3333 3344457899999
Q ss_pred EEeeeEEEeeccccccCChHHHHHHHhhcccceeEee
Q 046899 368 TMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCD 404 (407)
Q Consensus 368 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~ 404 (407)
|..|.|.||+-. +++.+..+.|-...|+|+-
T Consensus 413 SDCGhIFiW~K~------t~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 413 SDCGHIFIWDKK------TGEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred CccceEEEEecc------hhHHHHHhhcccceEeccC
Confidence 999999999998 8999999999888888873
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.7e-19 Score=156.26 Aligned_cols=287 Identities=15% Similarity=0.144 Sum_probs=199.0
Q ss_pred hhhhhccCceEEEeeeecccCCCeeEEEEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCC
Q 046899 16 YTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQN 95 (407)
Q Consensus 16 ~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 95 (407)
-+.|.......|.+--...+..|.. .|.+++++.++.+++|..+.-...............+|.++|.|+++.+ +
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n 355 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-N 355 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-C
Confidence 4457776655544433333332222 3578999999999999543213333444555667779999999999776 9
Q ss_pred CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCC
Q 046899 96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNG 175 (407)
Q Consensus 96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (407)
++.+.+|+-||+|+.|++.... .....+
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~--dp~ds~-------------------------------------------------- 383 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQ--DPDDSY-------------------------------------------------- 383 (577)
T ss_pred ceEEEeeccCceeeeeccCCCC--Cccccc--------------------------------------------------
Confidence 9999999999999999987221 111100
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI 255 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 255 (407)
........+.||++.|+.+++++.. ..|++++.||++++|+.....+ +......-.+.-.++++-.......
T Consensus 384 ------dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 384 ------DPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred ------Ccchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhh
Confidence 0011234677999999999999988 7799999999999999887663 2222222233445666644122333
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCceeeecC-------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 256 LTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 256 ~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
++...-+.-.++++.. ...+..+.. -...+..+.++|.+...| ++..|+.|+++|..++..+....
T Consensus 456 ~~s~~~~~~~~~~~ev------~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~-~~hed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEV------VSDLLIFESSASPGPRRYPQINKVVSHPTADITF-TAHEDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred hhhcccccccchhhhh------hhheeeccccCCCcccccCccceEEecCCCCeeE-ecccCCceecccccccccchhee
Confidence 3333334444445444 233333321 124578899999998664 99999999999999999999999
Q ss_pred cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccc
Q 046899 329 ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKS 398 (407)
Q Consensus 329 ~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~ 398 (407)
.|...++++++.|+ +.++.+++.|+.+++|.+. ...++.....|..
T Consensus 529 a~~~svtslai~~n------------------g~~l~s~s~d~sv~l~kld------~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPN------------------GPYLMSGSHDGSVRLWKLD------VKTCVLESTAHRK 574 (577)
T ss_pred eccceecceeecCC------------------CceEEeecCCceeehhhcc------chheeeccccccc
Confidence 99999999999888 8899999999999999997 5667776666653
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=2.2e-17 Score=137.55 Aligned_cols=271 Identities=14% Similarity=0.251 Sum_probs=185.8
Q ss_pred EEEEeec---ccccCccceEEEEeec--ccCcccCCcce---eeEEEeeCCCceEEEEEeC------CCCeEEEEeeCCC
Q 046899 41 SCRWGPQ---LEQATYKNRQRLYLSE--QFNEEARSPFV---KKFKTIIHPGEVNRIRELP------QNSKIVATHTDSP 106 (407)
Q Consensus 41 s~~~~~~---~~~~~~~~~~~i~~~~--~~~~~~~~~~~---~~~~~~~h~~~v~~l~~~~------~~~~~l~tg~~dg 106 (407)
.|.|.|+ +.+.+.|+..++|-.+ .|......+.. ...-.....+-|..-+|-+ ++.+++|+.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 5789997 6677888888999666 23322122111 1222233456677777752 2678999999999
Q ss_pred cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCC-CCcC
Q 046899 107 DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLES-PSIG 185 (407)
Q Consensus 107 ~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~~~~ 185 (407)
-|.+||.-+++....+...... |.. +....+ .|.++|. .+.++....|+++|+ ..+.
T Consensus 134 PIh~wdaftG~lraSy~~ydh~----de~-------taAhsL-------~Fs~DGe----qlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQ----DEY-------TAAHSL-------QFSPDGE----QLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred ceeeeeccccccccchhhhhhH----Hhh-------hhheeE-------EecCCCC----eEeecccceEEEeeccCCCC
Confidence 9999999999877655432110 000 000011 1111221 233444455555555 2222
Q ss_pred cee---e----EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899 186 ARG---K----YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 186 ~~~---~----~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
... + -.+..+.|.|++|+|.....++.|+...++-||.-.... +...+.+|.+.|+.++|.+ +|+.|.+|
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~e-dGn~lfsG 268 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCE-DGNKLFSG 268 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEecc-CcCeeccc
Confidence 111 1 123467899999999987799999999999998877666 5677779999999999999 88888888
Q ss_pred eC-CCcEEEEeCCCCCCCCCCCceeeecCCCC-CEEEEEE--cCCCCCEEEEeeCCCeEEEEeCCCCCc-ccccccCCCc
Q 046899 259 SA-DNSIHMFDRRKLTSDGVGSPIHKFEGHSA-AVLCVQW--SPDKSSVFGSSAEDGILNIWDHEKIGE-KQDYGELKYP 333 (407)
Q Consensus 259 ~~-dg~i~vwd~~~~~~~~~~~~~~~~~~h~~-~v~~v~~--~~~~~~ll~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~ 333 (407)
.. |-.|..||+|.. ..++..+..|.. .-..|.| .|++++ ||+|+.||.|++||++.... +..+..++..
T Consensus 269 aRk~dkIl~WDiR~~-----~~pv~~L~rhv~~TNQRI~FDld~~~~~-LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYS-----RDPVYALERHVGDTNQRILFDLDPKGEI-LASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred ccCCCeEEEEeehhc-----cchhhhhhhhccCccceEEEecCCCCce-eeccCCCccEEEEecCCCCCccccccccccc
Confidence 75 678999999985 578888888765 4444544 588885 58999999999999999544 7777788888
Q ss_pred ccCCCCcCc
Q 046899 334 IIHPAYSSD 342 (407)
Q Consensus 334 v~~~~~s~d 342 (407)
+.+++++|-
T Consensus 343 vNgvslnP~ 351 (406)
T KOG2919|consen 343 VNGVSLNPI 351 (406)
T ss_pred ccceecCcc
Confidence 889998885
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.6e-19 Score=146.91 Aligned_cols=193 Identities=22% Similarity=0.345 Sum_probs=151.5
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC-cce
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN-ADI 242 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v 242 (407)
+.++++.+.|+++++|..+++.+..++++...++.++|... +++.+.+|+.||+|++||+|............++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 44777889999999999999999999999999999999774 6688999999999999999988755555555665 567
Q ss_pred EEEEecCCCCCEEEEEe----CCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 243 HCVDWNPHDVNLILTGS----ADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~----~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
.|++.+- ..+.+++|. .+-.|.+||+|..+ +++..+ ..|..-|++++|+|..+.+|+|||.||.|.|+|
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q-----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ-----QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEecccc-----chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 7788776 678888885 35689999999842 335555 459999999999999999999999999999999
Q ss_pred CCCCCcccc---cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 318 HEKIGEKQD---YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 318 ~~~~~~~~~---~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
++.....-. .-.+...|-.+.|..+ --.+|.+.+.+.+..+|++++
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~-----------------~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSK-----------------KYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecC-----------------CcceEEEEEccCceeEEEccC
Confidence 987533222 2223444444444332 234689999999999999984
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=2.8e-18 Score=154.65 Aligned_cols=234 Identities=18% Similarity=0.268 Sum_probs=170.1
Q ss_pred ceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCC
Q 046899 55 NRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQ 134 (407)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~ 134 (407)
+.+-|| ++++..+.|....-.+ -....|+.+.|.|.+...||.++.||.|++|.+..+....
T Consensus 603 G~iai~---el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-------------- 664 (1012)
T KOG1445|consen 603 GVIAIY---ELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-------------- 664 (1012)
T ss_pred ceEEEE---EcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------
Confidence 345555 4555555555544333 3667899999999999999999999999999998653211
Q ss_pred cEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe
Q 046899 135 SVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG 214 (407)
Q Consensus 135 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~ 214 (407)
....+...+..|...|+.+.|+|-..+.|++++
T Consensus 665 -----------------------------------------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 665 -----------------------------------------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred -----------------------------------------------ccCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence 223345667789999999999998778999999
Q ss_pred CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEE
Q 046899 215 DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLC 293 (407)
Q Consensus 215 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~ 293 (407)
.|-+|++||+++.. ....+.+|.+.|..++|+| +|+.+|+.+.||+|++|..+.. .+++++-++- ...--.
T Consensus 698 yd~Ti~lWDl~~~~--~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~-----e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 698 YDSTIELWDLANAK--LYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSR-----EQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred ccceeeeeehhhhh--hhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCC-----CCccccCCCCccCccee
Confidence 99999999999988 6778889999999999999 9999999999999999999873 3556555442 233456
Q ss_pred EEEcCCCCCEEEEee---CCCeEEEEeCCCCCc--cc--ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899 294 VQWSPDKSSVFGSSA---EDGILNIWDHEKIGE--KQ--DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC 366 (407)
Q Consensus 294 v~~~~~~~~ll~s~~---~d~~i~vwd~~~~~~--~~--~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~ 366 (407)
|.|.-+|++++++|- ...+|.+||..+... +. .+..... +.-..+.+| .+-.+++
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~D-----------------s~~lflt 831 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYD-----------------SNVLFLT 831 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCC-----------------CceEEEe
Confidence 778889998876653 245688888776431 11 1111111 111223333 1345678
Q ss_pred EEEeeeEEEeecc
Q 046899 367 LTMVKVLEIWRMI 379 (407)
Q Consensus 367 ~~~d~~i~iwd~~ 379 (407)
|-.|..|..|.+.
T Consensus 832 GKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 832 GKGDRFVNMYEVI 844 (1012)
T ss_pred cCCCceEEEEEec
Confidence 8999999999986
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=3.1e-17 Score=140.61 Aligned_cols=262 Identities=19% Similarity=0.310 Sum_probs=179.4
Q ss_pred CeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeE-EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 38 PSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKF-KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 38 p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
|.+++++.+ .++|++.|..+|+|....-..+......+-. .+..|..+||+++|+| +|++||+|+++|.|.+|-
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWK 93 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEE
Confidence 555666544 4889999999999944311111111223322 3446999999999999 999999999999999998
Q ss_pred CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee
Q 046899 113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG 192 (407)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 192 (407)
...-... +-++. . -.+.+.......+.+
T Consensus 94 ~~~~~~~--------------------~~d~e-~-------------------------------~~~ke~w~v~k~lr~ 121 (434)
T KOG1009|consen 94 QGDVRIF--------------------DADTE-A-------------------------------DLNKEKWVVKKVLRG 121 (434)
T ss_pred ecCcCCc--------------------cccch-h-------------------------------hhCccceEEEEEecc
Confidence 7641100 00000 0 000112234456678
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
|...|..++|+|++ +++++++-|..+++||+..++ ....+.+|...+..++|+| -.+++++-+.|...+.+++...
T Consensus 122 h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 122 HRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred cccchhhhhccCCC-ceeeeeeccceEEEEEeccce--eEeeccccccccceeecch-hhhhhhhhccCcccceeeeeee
Confidence 99999999999999 899999999999999999999 7888889999999999999 7788888888876666553221
Q ss_pred C-----------------------------------------CCCC----------------------------CCceee
Q 046899 273 T-----------------------------------------SDGV----------------------------GSPIHK 283 (407)
Q Consensus 273 ~-----------------------------------------~~~~----------------------------~~~~~~ 283 (407)
. .++. ..|...
T Consensus 198 ~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~ 277 (434)
T KOG1009|consen 198 QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR 277 (434)
T ss_pred eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee
Confidence 1 0000 122233
Q ss_pred ecCCCCCEEEEEEcCC-----------------CCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcCcchh
Q 046899 284 FEGHSAAVLCVQWSPD-----------------KSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSDMLD 345 (407)
Q Consensus 284 ~~~h~~~v~~v~~~~~-----------------~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~ 345 (407)
+..-..++..++|+|- .+.++|.++ -+.|.+||.++...+..... |-.+++.++||+|
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d--- 353 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD--- 353 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCC---
Confidence 3333445666666540 123455555 46799999998777766554 7788999999999
Q ss_pred ccccceeeeeEeeCccceeeeEEEeeeEEE
Q 046899 346 IETKLLTSIGMHLIHGRLLVCLTMVKVLEI 375 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~~~~d~~i~i 375 (407)
+..++..|.||-.-+
T Consensus 354 ---------------g~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 354 ---------------GSVLLVSSTDGFCSL 368 (434)
T ss_pred ---------------CcEEEEeccCCceEE
Confidence 888888888883333
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=3.8e-17 Score=134.28 Aligned_cols=207 Identities=18% Similarity=0.305 Sum_probs=158.9
Q ss_pred CCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 36 VWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 36 ~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
.-|-.||+|.. .+.+.+-|.+..+| +.+.........++++|..+|..++|....-+++|+.|.||+||+|
T Consensus 150 ~aPlTSFDWne~dp~~igtSSiDTTCTiW-----die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIW-----DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred CCcccccccccCCcceeEeecccCeEEEE-----EEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence 34888999964 47788889999999 3344456667889999999999999998667899999999999999
Q ss_pred eCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe
Q 046899 112 DVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL 191 (407)
Q Consensus 112 d~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 191 (407)
|++..+. +-.+|.-.
T Consensus 225 DLR~leH----------------STIIYE~p------------------------------------------------- 239 (364)
T KOG0290|consen 225 DLRSLEH----------------STIIYEDP------------------------------------------------- 239 (364)
T ss_pred Eeccccc----------------ceEEecCC-------------------------------------------------
Confidence 9986532 11222111
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
....+...++|++++++++|+-..| ..|.|-|+|....+ +..++.|.+.|++++|.|.....+++++.|..+.+||+.
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp-va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP-VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc-eehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 1134677899999998999887665 57999999988764 778899999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
.+.......++..+. -.+.|+.++|++...--++.+. ++++.+
T Consensus 319 q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 319 QMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 865422234555555 4678999999976554555554 455544
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=7.7e-18 Score=144.26 Aligned_cols=174 Identities=24% Similarity=0.376 Sum_probs=142.5
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
...+|..+.|.+...+.||||+.|..|++|.+........ +
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-----------~---------------------------- 52 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-----------D---------------------------- 52 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-----------c----------------------------
Confidence 4568999999986666999999999999999886542210 0
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--------C------C
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--------S------G 227 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--------~------~ 227 (407)
.+-+....+..|...|+++.|+|+| .+||+|+.+|.|.+|-.. + .
T Consensus 53 --------------------~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke 111 (434)
T KOG1009|consen 53 --------------------MKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKE 111 (434)
T ss_pred --------------------eeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCcc
Confidence 0112234566799999999999999 899999999999999766 2 1
Q ss_pred CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899 228 STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307 (407)
Q Consensus 228 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~ 307 (407)
.....+...+|...|..++|+| +++++++|+.|..+++||+.. +.....+..|...|..++|.|-++++ ++-
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~------G~l~~~~~dh~~yvqgvawDpl~qyv-~s~ 183 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA------GQLLAILDDHEHYVQGVAWDPLNQYV-ASK 183 (434)
T ss_pred ceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc------ceeEeeccccccccceeecchhhhhh-hhh
Confidence 1223456678999999999999 999999999999999999999 99999999999999999999999987 688
Q ss_pred eCCCeEEEEeCCCCCc
Q 046899 308 AEDGILNIWDHEKIGE 323 (407)
Q Consensus 308 ~~d~~i~vwd~~~~~~ 323 (407)
+.|...+.+++..-+.
T Consensus 184 s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 184 SSDRHPEGFSAKLKQV 199 (434)
T ss_pred ccCcccceeeeeeeee
Confidence 8898788877765333
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2.9e-17 Score=156.08 Aligned_cols=295 Identities=13% Similarity=0.127 Sum_probs=187.6
Q ss_pred EEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC-CCCeEEEEeeCCCcEEEEeCcCCC-Ccc
Q 046899 43 RWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP-QNSKIVATHTDSPDVLIWDVEAQP-NRH 120 (407)
Q Consensus 43 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~-~~~ 120 (407)
+|.|.++++.....+++| +|.+......+.... .-...|+.|.+.. ++..++++|+.||.||||+--... ...
T Consensus 1074 pf~p~i~~ad~r~~i~vw---d~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1074 PFEPQIAAADDRERIRVW---DWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred CCCceeEEcCCcceEEEE---ecccCceeccccCCC--CCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence 445567777766678899 444333221111111 2346788888764 466799999999999999754321 111
Q ss_pred cc----cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe-eccc
Q 046899 121 AV----LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL-GHED 195 (407)
Q Consensus 121 ~~----~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~ 195 (407)
++ .+-....+..+++=.+.|-+ .....+.+++.-..|+|||....+.+..+. +...
T Consensus 1149 eLVTaw~~Ls~~~~~~r~~~~v~dWq-------------------Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQ-------------------QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred eeEEeeccccccCccCCCCCeeeehh-------------------hhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 11 11111111111111222211 112235556667889999998877776654 3445
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-CceeeecccCcc--eEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-PAVKVEKAHNAD--IHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~--v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
.|+++.-+-.+++++++|-.||.|++||.|.... ..+...+.|+.. |..+.+.+++-..|++|+.||.|++||+|..
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 6777766554458999999999999999987543 235566788877 9999998844456999999999999999983
Q ss_pred CCCCCCCceeeecCCC--C-CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccc
Q 046899 273 TSDGVGSPIHKFEGHS--A-AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETK 349 (407)
Q Consensus 273 ~~~~~~~~~~~~~~h~--~-~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~ 349 (407)
. .+...++..|. + .++++..|++.+ ++|+|+. +.|+||++.. +++..+..+..-... ..+
T Consensus 1290 ~----~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q----------~~g 1352 (1387)
T KOG1517|consen 1290 S----KETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQ----------RIG 1352 (1387)
T ss_pred c----ccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecCh-hhhcccccCcccccC----------cCC
Confidence 2 12222333332 3 599999999988 6789887 9999999875 333333322111000 000
Q ss_pred ceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 350 LLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.. ++..+.+|.-.+++|+.|++|.||...
T Consensus 1353 s~-scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1353 SV-SCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred Cc-ceeeecchhHhhhhccCCceEEEeecC
Confidence 00 225566678899999999999999875
No 175
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.2e-17 Score=133.63 Aligned_cols=335 Identities=13% Similarity=0.137 Sum_probs=216.0
Q ss_pred hhhhhhhhccCceEEEe-----eeecccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCC
Q 046899 13 DDRYTQWKSLVPVLYDW-----LANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPG 84 (407)
Q Consensus 13 ~~~~~~w~~~~~~~y~~-----l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~ 84 (407)
-++.+.|+++-|-...- |-.|+-. ...+.|.. .++|.+.|+.+|+|-..+|...+ ...+.... .-+
T Consensus 60 hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~--vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-Hr~~R~nv---e~d 133 (420)
T KOG2096|consen 60 HQRNDQWKAKQPTFVHPLNVSVLKGHKKE--VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-HRCIRQNV---EYD 133 (420)
T ss_pred ccchhhhcccCCCcccchhhhhhhccCCc--eeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-hhHhhccc---cCC
Confidence 35677888887753222 2222222 22335543 59999999999999655432221 11122222 223
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEe---ccccccccccCCCCCcccccC
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWS---IQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~---~~~~~~~~~~~~~~~~~~~~~ 161 (407)
..+.++|.|+-..++++.-...++++|.+...+.-. ..- ...-|| +.... ...+..+-..
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~-~~~----------~~v~~D~~~f~~kh------~v~~i~iGiA 196 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS-GSH----------HFVHIDNLEFERKH------QVDIINIGIA 196 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCC-CCc----------ccccccccccchhc------ccceEEEeec
Confidence 567888999666677777777789999887654210 000 001122 11100 0000001111
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC---CCC---CCceeee
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR---SGS---TPAVKVE 235 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---~~~---~~~~~~~ 235 (407)
.....+.+++.+..|.+|++. ++.++.+......-+..+.+|+| +++++++----|++|.+- .+. ......+
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 223457888999999999998 88888877666667788999999 899999988899999873 222 1245678
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC-CCceeeec----CCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV-GSPIHKFE----GHSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~----~h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
.+|.+.|..++|++ +...++|.+.||++++||..-....+. .+.+.+.. .-.+.-..++++|+|. +|| .+..
T Consensus 275 kGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA-~s~g 351 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLA-VSFG 351 (420)
T ss_pred ccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEE-eecC
Confidence 89999999999999 899999999999999999865322111 23333331 1122334899999999 443 4446
Q ss_pred CeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee-ccccccCChHH
Q 046899 311 GILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR-MIDLIYRPEEE 388 (407)
Q Consensus 311 ~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd-~~~~~~~~~~~ 388 (407)
..++++..+.++....++ .|...|++++|++| +.++++++ |..++|.. ... ...
T Consensus 352 s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~------------------g~~~atcG-dr~vrv~~ntpg-----~~~ 407 (420)
T KOG2096|consen 352 SDLKVFASEDGKDYPELEDIHSTTISSISYSSD------------------GKYIATCG-DRYVRVIRNTPG-----WHS 407 (420)
T ss_pred CceEEEEcccCccchhHHHhhcCceeeEEecCC------------------CcEEeeec-ceeeeeecCCCc-----hhh
Confidence 789999999988777766 48889999999998 66766654 55777776 321 345
Q ss_pred HHHHHhhcccc
Q 046899 389 VLAELDKFKSH 399 (407)
Q Consensus 389 ~~~~~~~h~~~ 399 (407)
.+..+++|...
T Consensus 408 ~V~~~~~~l~~ 418 (420)
T KOG2096|consen 408 RVVKLNRELPE 418 (420)
T ss_pred HHHHhhccccc
Confidence 56667766543
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=131.94 Aligned_cols=212 Identities=19% Similarity=0.259 Sum_probs=146.4
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN 164 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (407)
.|.+-+++| .+++|+.|..+|+|.+..+.+....... .
T Consensus 12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~-----~------------------------------------ 49 (325)
T KOG0649|consen 12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAE-----P------------------------------------ 49 (325)
T ss_pred HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccC-----C------------------------------------
Confidence 355556788 8899999999999999998754211110 0
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-----Cc-eeeeccc
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-----PA-VKVEKAH 238 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~-~~~~~~~ 238 (407)
+...++...++|.++|+.++|+. .+|++|+ ||.|+-|..+.... +. ......|
T Consensus 50 -----------------~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~ 108 (325)
T KOG0649|consen 50 -----------------PGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQ 108 (325)
T ss_pred -----------------CCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccc
Confidence 11223445578999999999984 4677776 59999998875431 00 0111112
Q ss_pred C-----cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 239 N-----ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 239 ~-----~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
. -.|+++...| ..+-+++++.|+.++.||++. ++..+++++|++.|.++.--.....+| ||+.||++
T Consensus 109 ~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~------G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtv 180 (325)
T KOG0649|consen 109 VDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLED------GRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTV 180 (325)
T ss_pred cCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecC------CEEEEEEcCCcceeeeeeecccCccee-ecCCCccE
Confidence 2 3689999999 555555556899999999999 999999999999999999855445576 99999999
Q ss_pred EEEeCCCCCcccccccCCCc-ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 314 NIWDHEKIGEKQDYGELKYP-IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
|+||+++.+..+.++..+.+ .....++.- |..+.+..+++++|..- .+.+|++.
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~w-----------igala~~edWlvCGgGp-~lslwhLr 235 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKW-----------IGALAVNEDWLVCGGGP-KLSLWHLR 235 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCce-----------eEEEeccCceEEecCCC-ceeEEecc
Confidence 99999999988887654433 112222211 24444445566655433 67777776
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=6.5e-18 Score=144.17 Aligned_cols=167 Identities=17% Similarity=0.360 Sum_probs=136.2
Q ss_pred eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-----CCceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899 188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS-----TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN 262 (407)
Q Consensus 188 ~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg 262 (407)
..+.+|+++|..++|+|...+.+|+||+|.+|.+|++-.+. ...+..+.+|...|.-++|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 44568999999999999887899999999999999987543 1246678899999999999998889999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.|.+||+.+ ++.+.++. |...|.++.|+.+|.+ |+|.+.|+.|||||.++++.+..-.+|.+.-
T Consensus 155 ~v~iWnv~t------geali~l~-hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~~~heG~k-------- 218 (472)
T KOG0303|consen 155 TVSIWNVGT------GEALITLD-HPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK-------- 218 (472)
T ss_pred eEEEEeccC------CceeeecC-CCCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEeeecccccCCC--------
Confidence 999999999 88888888 9999999999999995 5899999999999999998887766665521
Q ss_pred chhccccceeeeeEeeCccceeeeEEE----eeeEEEeeccc
Q 046899 343 MLDIETKLLTSIGMHLIHGRLLVCLTM----VKVLEIWRMID 380 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~i~~~~~----d~~i~iwd~~~ 380 (407)
....++.+++. |++.++ +..+-+||..+
T Consensus 219 ---------~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 219 ---------PARAIFLASGK-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred ---------cceeEEeccCc-eeeeccccccccceeccCccc
Confidence 11133344455 554443 33888998763
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.2e-18 Score=161.53 Aligned_cols=242 Identities=22% Similarity=0.293 Sum_probs=179.6
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
.++.+|..+|.|+.|.. .|.+++||++|..|+||...+..++....+|...+.+.
T Consensus 184 krLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdl------------------------ 238 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDL------------------------ 238 (1113)
T ss_pred HHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchh------------------------
Confidence 35668999999999887 99999999999999999999999999988887654332
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC-CCCCCceeee
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR-SGSTPAVKVE 235 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~ 235 (407)
+...-+..+++++.|..|++|.++.+.++..+.+|++.|++|+|+|.. +.+.||++++||.+ ....-.-...
T Consensus 239 --avs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 239 --AVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred --ccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCC
Confidence 122223446778889999999999999999999999999999999944 77899999999998 1110000000
Q ss_pred c-ccCc--------------------------ceEEEEecCCCCCEEEE-----------EeCCCcEEEEeCCCCCCCCC
Q 046899 236 K-AHNA--------------------------DIHCVDWNPHDVNLILT-----------GSADNSIHMFDRRKLTSDGV 277 (407)
Q Consensus 236 ~-~~~~--------------------------~v~~l~~~~~~~~~l~t-----------g~~dg~i~vwd~~~~~~~~~ 277 (407)
. .... .+.+++|.. ..-.+++ +-.+-.+++|++.+
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~------ 384 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT------ 384 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeeeccc------
Confidence 0 0001 112222322 2222333 33445567788777
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEe
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMH 357 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~ 357 (407)
+..++.+.+|...+..+.+||.+..+..+++.||...|||+-.+..++.+....+.+..-.||+| -.++...
T Consensus 385 g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd--------gts~~ls 456 (1113)
T KOG0644|consen 385 GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD--------GTSIALS 456 (1113)
T ss_pred chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC--------CceEecC
Confidence 78888888999999999999999988889999999999999998888877766777778899998 3344555
Q ss_pred eCccceee
Q 046899 358 LIHGRLLV 365 (407)
Q Consensus 358 ~~~~~~i~ 365 (407)
..|+...+
T Consensus 457 d~hgql~i 464 (1113)
T KOG0644|consen 457 DDHGQLYI 464 (1113)
T ss_pred CCCCceEE
Confidence 56666544
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.2e-17 Score=135.44 Aligned_cols=272 Identities=15% Similarity=0.218 Sum_probs=176.9
Q ss_pred eeeecccCCCeeEEEEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcE
Q 046899 29 WLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDV 108 (407)
Q Consensus 29 ~l~~~~~~~p~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i 108 (407)
.|..+....-++-+|=...+.++...+.+.+|+-+ .+...+.+ ...|...|+.+.-.| + ..|.|-+.|+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lq---t~r~~~~~----r~~g~~~it~lq~~p-~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQ---TERDLPLI----RLFGRLFITNLQSIP-N-DSLDTQGRDPLL 79 (323)
T ss_pred EeccccchheehhhccchhhhcccccceEEEEEee---cCccchhh----hhhccceeeceeecC-C-cchhhcCCCceE
Confidence 34444444455555666678888999999999543 33333222 224778899999777 4 468899999999
Q ss_pred EEEeCcCCCCccc--cc-CcCCCCCCC---CCcEE----EEeccc---------ccc-ccccCC-------CCCcc---c
Q 046899 109 LIWDVEAQPNRHA--VL-GAADSHPDL---DQSVV----LWSIQD---------HVS-ALAAEP-------GSAKS---T 158 (407)
Q Consensus 109 ~vwd~~~~~~~~~--~~-~~~~~~~~~---d~~i~----~w~~~~---------~~~-~~~~~~-------~~~~~---~ 158 (407)
.+|++........ +. .+..+.+.. .++.. .++-+. +.. .+...+ +.+.. .
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9999987432110 00 000000000 00000 111000 000 000000 00000 0
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcC----------ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIG----------ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS 228 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 228 (407)
....-.-.+++|-.+|.+.+||+.++. .+.....|..+|.++.+.+.- +.=++|+.+..+..|.++...
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeecccc
Confidence 001111235668899999999999873 334445689999999998765 456788888899999987542
Q ss_pred --CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899 229 --TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 229 --~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s 306 (407)
.+......--...|..+..-| |++.+||++.|+.||||..++ ..++..++.|++.|++++|+|+.. |+|+
T Consensus 239 gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrt------l~pLAVLkyHsagvn~vAfspd~~-lmAa 310 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRT------LNPLAVLKYHSAGVNAVAFSPDCE-LMAA 310 (323)
T ss_pred CcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEecc------CCchhhhhhhhcceeEEEeCCCCc-hhhh
Confidence 212222222344578889999 999999999999999999999 899999999999999999999977 6799
Q ss_pred eeCCCeEEEEeC
Q 046899 307 SAEDGILNIWDH 318 (407)
Q Consensus 307 ~~~d~~i~vwd~ 318 (407)
++.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=147.21 Aligned_cols=227 Identities=19% Similarity=0.281 Sum_probs=160.8
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
.|...|.|+.|.. +...+.+++++..+.-||+... ....+.-...++|..+. +. ......
T Consensus 12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h---~~---------------~rs~~~ 71 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMH---LG---------------GRSSGG 71 (737)
T ss_pred ccceeEEeecccc-cceEEEeccCceEEEeecccch-hhhhhhCCcccCCcccc---cc---------------ccccCC
Confidence 5777888999987 6666666655544444555433 33222222222221100 00 011113
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
|.-...++..++||.+.+.. +.++......+|.+.+.|-.|+|+| .-|+++++||.|++|.- ++- ...++.....
T Consensus 72 g~~~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGM--LRStl~Q~~~ 146 (737)
T KOG1524|consen 72 GKGSDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGM--LRSTVVQNEE 146 (737)
T ss_pred CCCcceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cch--HHHHHhhcCc
Confidence 33345567788888888776 4455666778899999999999999 77999999999999984 454 3344445677
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+|+|++|.|+..+.+++.+ +.+.|=-+.. ...+-.+++|.+-|.++.|++... |++||+.|-..++||-.
T Consensus 147 ~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~------n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~- 216 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG--GHISIKPLAA------NSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ- 216 (737)
T ss_pred eeEEEEECCCCCceEEecC--CeEEEeeccc------ccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc-
Confidence 8999999996666666654 4566655555 456778899999999999999988 56899999999999965
Q ss_pred CCcccccccCCCcccCCCCcCc
Q 046899 321 IGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 321 ~~~~~~~~~~~~~v~~~~~s~d 342 (407)
+..+-+-..|+.||++++|+||
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred CcccccCChhccceeeeeeccc
Confidence 4677777889999999999998
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=1.5e-16 Score=148.98 Aligned_cols=268 Identities=22% Similarity=0.400 Sum_probs=195.5
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC-CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP-NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
....|...+.++.+.+ .+..++.++.|+.+.+|+..... ....+...... . -..+... ..
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~-----------~~---- 120 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS--S-VSKLALS-----------SP---- 120 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCC--c-eeeEEEE-----------CC----
Confidence 4457999999999988 78888899899999999998775 33333221110 0 0000000 00
Q ss_pred ccccCCCCCcccc-ccCCCCCCCCCCCC-cCceeeEeecccCEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCcee
Q 046899 157 STASGGANSKNAS-KSGGNGDKPLESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVK 233 (407)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 233 (407)
.+. ..+.. ...++.+.+|+... ......+..|...|..++|+|++ ..+++++. |+.+++|++.... ...
T Consensus 121 ---~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~ 192 (466)
T COG2319 121 ---DGN--SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK--PLS 192 (466)
T ss_pred ---Ccc--eEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc--eEE
Confidence 111 12233 34488999999988 77788888999999999999999 57888875 9999999999855 567
Q ss_pred eecccCcceEEEEecCCCCC-EEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 234 VEKAHNADIHCVDWNPHDVN-LILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
.+..|...+.+++|+| ++. ++++++.|+.|++||.+. +..+. .+..|...+ -..|+|++. ++++++.|+
T Consensus 193 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~ 263 (466)
T COG2319 193 TLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDG 263 (466)
T ss_pred eeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC------CcEEeeecCCCCcce-eEeECCCCC-EEEEecCCC
Confidence 7777999999999998 776 566669999999998886 67777 688888875 448999996 456999999
Q ss_pred eEEEEeCCCCCc-ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899 312 ILNIWDHEKIGE-KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL 390 (407)
Q Consensus 312 ~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~ 390 (407)
.+++||+..... ...+..|..++.++.|+|+ +..+++++.|+.+++|+... ....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~~~~~~d~~~~~~~~~~------~~~~ 319 (466)
T COG2319 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD------------------GKLLASGSSDGTVRLWDLET------GKLL 319 (466)
T ss_pred cEEEeeecCCCcEEEEEecCCccEEEEEECCC------------------CCEEEEeeCCCcEEEEEcCC------CceE
Confidence 999999997665 3333456666666666664 66666788888999998873 3222
Q ss_pred HH--HhhcccceeEeec
Q 046899 391 AE--LDKFKSHIFGCDK 405 (407)
Q Consensus 391 ~~--~~~h~~~v~~~~~ 405 (407)
.. ..+|...|..+.|
T Consensus 320 ~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 320 SSLTLKGHEGPVSSLSF 336 (466)
T ss_pred EEeeecccCCceEEEEE
Confidence 22 3477777777766
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.7e-17 Score=138.39 Aligned_cols=178 Identities=16% Similarity=0.211 Sum_probs=135.2
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
...+|.+.|++|.|+. ++++||+|+.|..+++|++...-..+
T Consensus 51 D~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------- 92 (609)
T KOG4227|consen 51 DVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK------------------------------------- 92 (609)
T ss_pred hhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc-------------------------------------
Confidence 3458999999999998 79999999999999999987432111
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
+.++++... .|...|.|++|+... ..+.+|+.+++|.+.|+.+.+...+....
T Consensus 93 -------------------------~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~qsi~V~~~~ 146 (609)
T KOG4227|consen 93 -------------------------TPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQSIYVANEN 146 (609)
T ss_pred -------------------------CCCCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccceeeeeeccc
Confidence 112333332 366899999999877 78999999999999999988732222222
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
...+.|+.+..+| ..+.|++.+.+|.|.+||.+..... +.++ .+.........+.|+|..+.||++.+.-+-+.+|
T Consensus 147 ~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~--~~~~-~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~ 222 (609)
T KOG4227|consen 147 NNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNP--ISLV-LPANSGKNFYTAEFHPETPALILVNSETGGPNVF 222 (609)
T ss_pred CcccceeecccCC-CCceEEEEecCceEEEEeccCCCCC--Ccee-eecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence 3345999999999 6789999999999999999973211 1111 2222345678899999999999999999999999
Q ss_pred eCCCCCc
Q 046899 317 DHEKIGE 323 (407)
Q Consensus 317 d~~~~~~ 323 (407)
|.+....
T Consensus 223 D~R~~~~ 229 (609)
T KOG4227|consen 223 DRRMQAR 229 (609)
T ss_pred eeccccc
Confidence 9987543
No 183
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.3e-17 Score=144.66 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=183.9
Q ss_pred CeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcC
Q 046899 38 PSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDVEA 115 (407)
Q Consensus 38 p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~ 115 (407)
-++|++... -+++|+.|+++|+| ......+++...-.+.|.||+|+|.... +||.+ .+..+.|-+..-
T Consensus 404 r~iSvdp~G~wlasGsdDGtvriW---------Ei~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 404 RSISVDPSGEWLASGSDDGTVRIW---------EIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIF 473 (733)
T ss_pred EEEEecCCcceeeecCCCCcEEEE---------EeecceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCccc
Confidence 556665533 38899999999999 4445667777788899999999994333 34444 334466655433
Q ss_pred CCCc---------ccc----------------------------cCcCCCCCCC-----------------CCcEEEEec
Q 046899 116 QPNR---------HAV----------------------------LGAADSHPDL-----------------DQSVVLWSI 141 (407)
Q Consensus 116 ~~~~---------~~~----------------------------~~~~~~~~~~-----------------d~~i~~w~~ 141 (407)
+..+ ... ..|...+..+ ...|.|.++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 3110 000 0011111111 355666776
Q ss_pred cccccccc--cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcE
Q 046899 142 QDHVSALA--AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCL 219 (407)
Q Consensus 142 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i 219 (407)
........ ...+.+....+.... ..+..+....++|+|+...+.+..+......|..++.+|.| ..|+.|+.|+.+
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G-Dnli~gs~d~k~ 631 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG-DNLILGSYDKKM 631 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCC-ceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC-CeEEEecCCCee
Confidence 65433222 222222223333222 23445667889999999988888888788899999999999 678899999999
Q ss_pred EEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC---CCCCCCceeeecCCCCC----EE
Q 046899 220 ILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT---SDGVGSPIHKFEGHSAA----VL 292 (407)
Q Consensus 220 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~h~~~----v~ 292 (407)
+.||+.-..+ ..+.+..|...+++++|++ .-.+|++|+.||.+.||--.-.. .+..--++..+++|... |.
T Consensus 632 ~WfDldlssk-Pyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVL 709 (733)
T KOG0650|consen 632 CWFDLDLSSK-PYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVL 709 (733)
T ss_pred EEEEcccCcc-hhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceE
Confidence 9999987766 4778889999999999999 88999999999999998643211 01113577888898765 99
Q ss_pred EEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 293 CVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 293 ~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
...|||...+|| +++.||+|++|
T Consensus 710 d~~wHP~qpWLf-sAGAd~tirlf 732 (733)
T KOG0650|consen 710 DTIWHPRQPWLF-SAGADGTIRLF 732 (733)
T ss_pred eecccCCCceEE-ecCCCceEEee
Confidence 999999999997 88889999998
No 184
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=1.7e-16 Score=140.69 Aligned_cols=250 Identities=17% Similarity=0.230 Sum_probs=155.8
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
.+..|+|++|.|-+..+++.+-.+|.+.++|..-...... .+.....+ -....+-.-.
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~--p~~~~~k~-~~~f~i~t~k------------------- 275 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA--PSYQALKD-GDQFAILTSK------------------- 275 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC--CcccccCC-CCeeEEeeee-------------------
Confidence 3478999999997788888889999999998732110000 00000000 0001110000
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 241 (407)
...+..++..+.-.++.|+.++|+|+| .+||+.+.||.++|||..+.+ +.-.+...-+.
T Consensus 276 ------------------sk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~e--Llg~mkSYFGG 334 (636)
T KOG2394|consen 276 ------------------SKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQE--LLGVMKSYFGG 334 (636)
T ss_pred ------------------ccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHH--HHHHHHhhccc
Confidence 001113455555556789999999999 899999999999999999877 45555566788
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
..|++|+| |+++|++|+.|..|.||.+.. .+.+..-++|+.+|..|+|.| |. .+.-.++...=-|-...
T Consensus 335 LLCvcWSP-DGKyIvtGGEDDLVtVwSf~e------rRVVARGqGHkSWVs~VaFDp---yt-t~~ee~~~~~~~~~~~~ 403 (636)
T KOG2394|consen 335 LLCVCWSP-DGKYIVTGGEDDLVTVWSFEE------RRVVARGQGHKSWVSVVAFDP---YT-TSTEEWNNFSGMDSTFS 403 (636)
T ss_pred eEEEEEcC-CccEEEecCCcceEEEEEecc------ceEEEeccccccceeeEeecc---cc-ccccccccccccccccc
Confidence 99999999 999999999999999999998 889999999999999999997 22 12221111000000000
Q ss_pred CcccccccCCCc---ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccc
Q 046899 322 GEKQDYGELKYP---IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKS 398 (407)
Q Consensus 322 ~~~~~~~~~~~~---v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~ 398 (407)
.....++....+ ..+...|+. ....+-..++-+.+.|..+.+||+.+..+.+ .+++..++.|.+
T Consensus 404 ~~~~~~~~r~~~~~S~~~~~~s~~------------~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~-~~p~~~~R~~~n 470 (636)
T KOG2394|consen 404 DVAHDFEIRANGTGSAEGCPLSSF------------NRINSVTYRFGSVGQDTQLCLWDLTEDVLVP-HPPLYRLRRHPN 470 (636)
T ss_pred chhcccccccCCCCCcCCCccccc------------ccccceEEEeecccccceEEEEecchhhccc-CCchhhhhcCCC
Confidence 000111100000 001111111 1111125567799999999999998655443 445566666665
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=2e-16 Score=147.43 Aligned_cols=278 Identities=15% Similarity=0.180 Sum_probs=180.3
Q ss_pred hhhccCceEEEeeeecccCCCeeEEEEee----cccccCccceEEEEeecccCcccC-CcceeeEEEeeCCCceEEEEEe
Q 046899 18 QWKSLVPVLYDWLANHNLVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEAR-SPFVKKFKTIIHPGEVNRIREL 92 (407)
Q Consensus 18 ~w~~~~~~~y~~l~~~~~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~ 92 (407)
+|....|.-+.+. ++.+-+...+.+.| .++.|+++|.+.+|... .... .+.........|..+|+.+.|.
T Consensus 226 vW~~~~p~~Pe~~--~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~---~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 226 VWSLKNPNTPELV--LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLR---KGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred EEecCCCCCceEE--EecCCceeEEEeccCCcceEEeeccCceEEEEEcc---CCCCCCCcccccccccCCcCeEEEEEe
Confidence 4444444333322 23333455555555 47889999999999433 2222 2444555666799999999997
Q ss_pred CCC-CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc
Q 046899 93 PQN-SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS 171 (407)
Q Consensus 93 ~~~-~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (407)
... +.-+++++.||.|..|+++................. .-..+..- +...+.+.+ .....++.|+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~---~~~~~~~~-~~t~~~F~~---------~~p~~FiVGT 367 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHK---GQQSSKAV-GATSLKFEP---------TDPNHFIVGT 367 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhccccccccc---cccccccc-ceeeEeecc---------CCCceEEEEc
Confidence 621 245888999999999987754332111100000000 00000000 000111111 1112355566
Q ss_pred CCCCCCCC---CCCCc-----CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899 172 GGNGDKPL---ESPSI-----GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH 243 (407)
Q Consensus 172 ~~~~i~i~---d~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 243 (407)
..|.|.-- +.... +.+..+..|.++|+++.++|-+..+|.+++ |.+++||....... ....+..+...++
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~-Pl~~~~~~~~~v~ 445 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS-PLLSLDSSPDYVT 445 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-cchhhhhccceee
Confidence 66665541 11111 223455678999999999999977777777 99999999874443 4556667788899
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+++|+|.....|+++..||.+.+||+.... ..|+.+.+.+....+.+.|++.|+ +++.|...|++.+|++..
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~----~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDD----EEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhccc----cCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 999999888999999999999999998755 567777776777888899999899 558999999999999974
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.6e-16 Score=126.24 Aligned_cols=221 Identities=13% Similarity=0.159 Sum_probs=148.5
Q ss_pred ccccCccceEEEEeecccCc-ccCCcc-eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899 48 LEQATYKNRQRLYLSEQFNE-EARSPF-VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA 125 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~-~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 125 (407)
++.+..++.+.++....... +...+. .+.+..-+|+++|+.++|.. .+|++|+. |.|+=|........
T Consensus 25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es------ 94 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEES------ 94 (325)
T ss_pred EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhh------
Confidence 56677777776664442221 122222 22333358999999999873 46777764 99999998754321
Q ss_pred CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC
Q 046899 126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS 205 (407)
Q Consensus 126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~ 205 (407)
.++-.+|.+..+ .+.-...-..|+++-..|.
T Consensus 95 -------~~~K~lwe~~~P------------------------------------------~~~~~~evPeINam~ldP~ 125 (325)
T KOG0649|consen 95 -------LATKRLWEVKIP------------------------------------------MQVDAVEVPEINAMWLDPS 125 (325)
T ss_pred -------ccchhhhhhcCc------------------------------------------cccCcccCCccceeEeccC
Confidence 122234443321 1110112347899999998
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec
Q 046899 206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE 285 (407)
Q Consensus 206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 285 (407)
... ++.++.|+.++-||+++++ ..+.+++|++.|.++.--. ....+++|+.||++|+||.++ .+.+..+.
T Consensus 126 enS-i~~AgGD~~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt------~k~v~~ie 195 (325)
T KOG0649|consen 126 ENS-ILFAGGDGVIYQVDLEDGR--IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKT------QKHVSMIE 195 (325)
T ss_pred CCc-EEEecCCeEEEEEEecCCE--EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccc------cceeEEec
Confidence 844 5555589999999999999 8899999999999998844 456788999999999999999 77777665
Q ss_pred CC----------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 286 GH----------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 286 ~h----------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.. ...|-+++- +..++ ++| ....+.+|.++..+....++- ..++..+.|-.|
T Consensus 196 ~yk~~~~lRp~~g~wigala~--~edWl-vCG-gGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d 257 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAV--NEDWL-VCG-GGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDD 257 (325)
T ss_pred cccChhhcCcccCceeEEEec--cCceE-Eec-CCCceeEEeccCCCceEEEec-ccceeEeeeecc
Confidence 32 224666665 44555 344 467899999999877776653 445666777555
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.6e-17 Score=145.72 Aligned_cols=241 Identities=12% Similarity=0.175 Sum_probs=169.0
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
.+.+..|.+.|+.+.|.| ....|++++.||+|++|+++.... +
T Consensus 287 k~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~------s------------------------------ 329 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKK------S------------------------------ 329 (577)
T ss_pred eeeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCC------c------------------------------
Confidence 446667999999999998 566899999999999999954110 0
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC------
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST------ 229 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------ 229 (407)
+....+++.++.+|.++|.|+++.+.+ ..+++|+.||+|+.|++-...-
T Consensus 330 ------------------------~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 330 ------------------------AEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred ------------------------cccceeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccC
Confidence 012335778899999999999999998 8999999999999996652211
Q ss_pred --CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcCCCCCEEE
Q 046899 230 --PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSPDKSSVFG 305 (407)
Q Consensus 230 --~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~ll~ 305 (407)
.....+.+|.+.|+.+++++ ....|++++.||+++.|+... ..+ .+|.. -.+.-+++.+-.....+.+
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~------~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~ 456 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTE------ESP-CTFGEPKEHGYPLSVDRTSSRPAHSL 456 (577)
T ss_pred cchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCC------cCc-cccCCccccCCcceEeeccchhHhhh
Confidence 13446779999999999999 777899999999999999987 344 33332 2334467777654422222
Q ss_pred EeeCCCeEEEEeCCCCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc
Q 046899 306 SSAEDGILNIWDHEKIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI 382 (407)
Q Consensus 306 s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~ 382 (407)
+ +...+.+++...+. ++.+.....+ ...-.++ +..+..+.+ ....+++..|..|+++|..
T Consensus 457 ~---s~~~~~~~~~~~ev~s~~~~~~s~~~~--~~~~~~~--------in~vVs~~~-~~~~~~~hed~~Ir~~dn~--- 519 (577)
T KOG0642|consen 457 A---SFRFGYTSIDDMEVVSDLLIFESSASP--GPRRYPQ--------INKVVSHPT-ADITFTAHEDRSIRFFDNK--- 519 (577)
T ss_pred h---hcccccccchhhhhhhheeeccccCCC--cccccCc--------cceEEecCC-CCeeEecccCCceeccccc---
Confidence 2 33444555444433 3333322221 2222222 111233332 5677788899999999999
Q ss_pred cCChHHHHHHHhhcccceeEeecc
Q 046899 383 YRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 383 ~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
++.++.....|...|+++++-
T Consensus 520 ---~~~~l~s~~a~~~svtslai~ 540 (577)
T KOG0642|consen 520 ---TGKILHSMVAHKDSVTSLAID 540 (577)
T ss_pred ---ccccchheeeccceecceeec
Confidence 899999999999999999874
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=4.8e-16 Score=147.91 Aligned_cols=273 Identities=15% Similarity=0.186 Sum_probs=176.2
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN 164 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (407)
+...+.|+| -...++++...-.|+|||.+.++....+..+......+ ..+ ........
T Consensus 1066 ~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~V-s~l--------------------~liNe~D~ 1123 (1387)
T KOG1517|consen 1066 PPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRV-SDL--------------------ELINEQDD 1123 (1387)
T ss_pred CCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCcc-cee--------------------eeecccch
Confidence 556677888 44567777766799999999887766554443221110 001 11123334
Q ss_pred CccccccCCCCCCCCCCCC-----cCceeeEee---c----ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899 165 SKNASKSGGNGDKPLESPS-----IGARGKYLG---H----EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~---~----~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 232 (407)
..+++++.||.|+||+--. .+.+..+.+ + .+.=.-+.|....+ +|+++|.-..|+|||...... +.
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~-~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQV-VA 1201 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEeccccee-Ee
Confidence 5677788888888886422 222222221 1 11113457777663 555556678999999987662 22
Q ss_pred eeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC--EEEEEEcCCCCCEEEEeeCC
Q 046899 233 KVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA--VLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~--v~~v~~~~~~~~ll~s~~~d 310 (407)
....+....|+++.-+-..++.+++|..||.|++||.|.... ...+...+.|+.. |..+.+.+.|-.-+++|+.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---cccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 233455667888887665789999999999999999998543 3467788889887 99999998776535799999
Q ss_pred CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc-eeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH
Q 046899 311 GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL-LTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV 389 (407)
Q Consensus 311 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~-~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~ 389 (407)
|.|++||++.. ...++..... .-.+ |. +.++.+ ..|...|++|+. +.|+||++. |+.
T Consensus 1279 G~I~~~DlR~~-~~e~~~~iv~---~~~y---------Gs~lTal~V-H~hapiiAsGs~-q~ikIy~~~-------G~~ 1336 (1387)
T KOG1517|consen 1279 GDIQLLDLRMS-SKETFLTIVA---HWEY---------GSALTALTV-HEHAPIIASGSA-QLIKIYSLS-------GEQ 1336 (1387)
T ss_pred CeEEEEecccC-cccccceeee---cccc---------Cccceeeee-ccCCCeeeecCc-ceEEEEecC-------hhh
Confidence 99999999985 2222221000 0000 10 222233 346888999998 999999996 776
Q ss_pred HHHHhhc-------ccceeEeecc
Q 046899 390 LAELDKF-------KSHIFGCDKS 406 (407)
Q Consensus 390 ~~~~~~h-------~~~v~~~~~s 406 (407)
+..++.+ .+.+.|++|-
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFH 1360 (1387)
T ss_pred hcccccCcccccCcCCCcceeeec
Confidence 6665533 3456777764
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.8e-16 Score=136.72 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=107.9
Q ss_pred eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC-----CEEEEEeCC
Q 046899 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV-----NLILTGSAD 261 (407)
Q Consensus 187 ~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~~l~tg~~d 261 (407)
+.....|...|.++.|+|++ ..|++.+.| ..++|+++++......+...-+.....+.|+. ++ .+++....-
T Consensus 179 ~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~ 255 (398)
T KOG0771|consen 179 ILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPG 255 (398)
T ss_pred hhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCC
Confidence 33445688999999999999 899999999 99999999986321222123334455677766 44 233334445
Q ss_pred CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCc
Q 046899 262 NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYS 340 (407)
Q Consensus 262 g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s 340 (407)
+.|+.||+...+.+. .-+.++...-...|++++.+++|+++ |.|+.||.|-|++..+.+.++-.+ .|..-|+++.|+
T Consensus 256 ~~v~~~~~~~w~~~~-~l~~~~~~~~~~siSsl~VS~dGkf~-AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 256 GGVRLCDISLWSGSN-FLRLRKKIKRFKSISSLAVSDDGKFL-ALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred CceeEEEeeeecccc-ccchhhhhhccCcceeEEEcCCCcEE-EEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEc
Confidence 678888877643211 11222222234579999999999965 899999999999999988887665 588899999999
Q ss_pred Cc
Q 046899 341 SD 342 (407)
Q Consensus 341 ~d 342 (407)
||
T Consensus 334 Pd 335 (398)
T KOG0771|consen 334 PD 335 (398)
T ss_pred CC
Confidence 99
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.5e-16 Score=141.30 Aligned_cols=175 Identities=18% Similarity=0.299 Sum_probs=134.9
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
.+.||+|.|+|+.|+. +|.+|++|+.|-.+.|||.-..+.+..
T Consensus 45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~Kllhs------------------------------------ 87 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHS------------------------------------ 87 (758)
T ss_pred hhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeee------------------------------------
Confidence 4458999999999998 999999999999999999875433322
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCC--------
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGS-------- 228 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~-------- 228 (407)
.-.+|...|.+++|-|. +..++++|+.|..|++||+...+
T Consensus 88 -------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 88 -------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred -------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 11379999999999985 33689999999999999998532
Q ss_pred CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC-CCCCc---eeeecCCCCCEEEEEEcCCCCCEE
Q 046899 229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD-GVGSP---IHKFEGHSAAVLCVQWSPDKSSVF 304 (407)
Q Consensus 229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-~~~~~---~~~~~~h~~~v~~v~~~~~~~~ll 304 (407)
.........|...|..|+-.|+.++.+.+++.||+|+-+|+|.+..- ....+ +..+...--...++..+|..+++|
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence 11234456788889999999966799999999999999999985420 00111 111111223578899999999999
Q ss_pred EEeeCCCeEEEEeCCC
Q 046899 305 GSSAEDGILNIWDHEK 320 (407)
Q Consensus 305 ~s~~~d~~i~vwd~~~ 320 (407)
|.|+.|-..++||.+.
T Consensus 217 aVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 217 AVGGSDPFARLYDRRR 232 (758)
T ss_pred EecCCCchhhhhhhhh
Confidence 9999999999999653
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.7e-15 Score=141.85 Aligned_cols=220 Identities=13% Similarity=0.141 Sum_probs=147.4
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCC---CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDS---PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
...|...+...+|+| +++.|+.++.+ ..|.+||+.+++...
T Consensus 199 lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~----------------------------------- 242 (429)
T PRK01742 199 VNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKV----------------------------------- 242 (429)
T ss_pred eccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEE-----------------------------------
Confidence 346788899999999 78888877643 358888876542110
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE-eCCCcEEEE--EcCCCCCCce
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV-GDDSCLILW--DARSGSTPAV 232 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~-~~dg~i~iw--d~~~~~~~~~ 232 (407)
+..+.++ ...++|+|+| +.|+.+ +.+|.+.|| |+.++. .
T Consensus 243 -------------------------------l~~~~g~---~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~---~ 284 (429)
T PRK01742 243 -------------------------------VASFRGH---NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGT---P 284 (429)
T ss_pred -------------------------------EecCCCc---cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCC---e
Confidence 1111122 2357999999 555554 568876666 555444 3
Q ss_pred eeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 233 KVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 233 ~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
..+..+...+....|+| +++.|+.. ..+|...+|++.... .....+ .+.. ...+|+|+|++|+ ..+.++
T Consensus 285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~-----~~~~~l-~~~~--~~~~~SpDG~~ia-~~~~~~ 354 (429)
T PRK01742 285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASG-----GGASLV-GGRG--YSAQISADGKTLV-MINGDN 354 (429)
T ss_pred EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCC-----CCeEEe-cCCC--CCccCCCCCCEEE-EEcCCC
Confidence 44556667788999999 78866654 457888999876521 222223 3433 4678999999774 555555
Q ss_pred eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHH
Q 046899 312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA 391 (407)
Q Consensus 312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~ 391 (407)
+.+||+.+++....... .....+.|+|| +..|+.++.++.+++|.+.+ .++..+.
T Consensus 355 -i~~~Dl~~g~~~~lt~~--~~~~~~~~sPd------------------G~~i~~~s~~g~~~~l~~~~----~~G~~~~ 409 (429)
T PRK01742 355 -VVKQDLTSGSTEVLSST--FLDESPSISPN------------------GIMIIYSSTQGLGKVLQLVS----ADGRFKA 409 (429)
T ss_pred -EEEEECCCCCeEEecCC--CCCCCceECCC------------------CCEEEEEEcCCCceEEEEEE----CCCCceE
Confidence 55699988654322222 12346778888 88899998999888887641 1477888
Q ss_pred HHhhcccceeEeeccC
Q 046899 392 ELDKFKSHIFGCDKSC 407 (407)
Q Consensus 392 ~~~~h~~~v~~~~~s~ 407 (407)
.+.+|.+.+...+|||
T Consensus 410 ~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 410 RLPGSDGQVKFPAWSP 425 (429)
T ss_pred EccCCCCCCCCcccCC
Confidence 8889999999999986
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=2e-16 Score=137.82 Aligned_cols=232 Identities=13% Similarity=0.141 Sum_probs=175.3
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
.....+.|.. +|+.|+.|+..|.|..+|..+.....++...... .|+ .+..
T Consensus 130 FGPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv----------~Dv--------------~~LH---- 180 (545)
T KOG1272|consen 130 FGPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETV----------RDV--------------TFLH---- 180 (545)
T ss_pred cCCeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhh----------hhh--------------hhhc----
Confidence 3456677777 9999999999999999999998766554322111 000 0000
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH 243 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 243 (407)
+..+++......+.++|- .|..+..++.| ..|..+.|.|.. .+|++++..|.++--|+.+++ .+..+..-.+.+.
T Consensus 181 neq~~AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gk--lVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 181 NEQFFAVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGK--LVASIRTGAGRTD 255 (545)
T ss_pred chHHHHhhhhceEEEecC-CCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhh--hhHHHHccCCccc
Confidence 001222333334444442 34455555544 468999999998 899999999999999999999 6777777778888
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
.++-+| -...+-+|...|+|.+|.... .+++..+..|.++|.+|++.++|.|+ ||.+.|..++|||+++...
T Consensus 256 vm~qNP-~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 256 VMKQNP-YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred hhhcCC-ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcceEEECCCCcEE-eecccccceeEeeeccccc
Confidence 899999 667899999999999999998 89999999999999999999999986 7999999999999999998
Q ss_pred ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
+.++.. ..+...+++|.. .+++.+....|.||.=
T Consensus 328 l~t~~t-p~~a~~ls~Sqk--------------------glLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 328 LHTYRT-PHPASNLSLSQK--------------------GLLALSYGDHVQIWKD 361 (545)
T ss_pred cceeec-CCCccccccccc--------------------cceeeecCCeeeeehh
Confidence 887776 666777888654 2445555568888853
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=2.1e-15 Score=125.82 Aligned_cols=208 Identities=14% Similarity=0.182 Sum_probs=158.7
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG 162 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 162 (407)
..+|+|.+|++ +...+|.+-....|.||.......
T Consensus 10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred cCceeeeeecC-CCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 57899999999 888999999988999998764421
Q ss_pred CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC-CCCCCceeeecccCcc
Q 046899 163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR-SGSTPAVKVEKAHNAD 241 (407)
Q Consensus 163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~ 241 (407)
.+...+++.|...|++|+|.|.. +.+++|+.|..-++|... .+.......+..++..
T Consensus 45 ---------------------w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA 102 (361)
T KOG1523|consen 45 ---------------------WEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA 102 (361)
T ss_pred ---------------------ceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccc
Confidence 13456777899999999999998 789999999999999994 3443345566678999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK- 320 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~- 320 (407)
++++.|+| .++.||+|+.-..|.||-.+....- +-....-+.+...|++++|+|++- |+|+|+.|+..||+..--
T Consensus 103 At~V~WsP-~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 103 ATCVKWSP-KENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred eeeEeecC-cCceEEeccCccEEEEEEEecccce--ehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeee
Confidence 99999999 8999999999999999877652210 111223345778999999999998 668999999999997531
Q ss_pred -----------------CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 321 -----------------IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 321 -----------------~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
++.+..+....+.+.++.|||. ++.|+-.+.|+++.+=|-.
T Consensus 179 ~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s------------------G~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 179 GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS------------------GNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC------------------CCEeeEecCCCceEEeecC
Confidence 1112223334455666666665 7888888888888888775
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=2e-14 Score=122.28 Aligned_cols=176 Identities=11% Similarity=0.253 Sum_probs=137.0
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcceEEEEecCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADIHCVDWNPH 250 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~~~~ 250 (407)
..+++.+.++...+..+. ...+|.++.++.+. |+++-++ .|.|||+++.+ .+.++. .+...+.+++.++
T Consensus 68 r~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~R---LvV~Lee-~IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~- 139 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIF-FPTSILAVRMNRKR---LVVCLEE-SIYIYDIKDMK--LLHTIETTPPNPKGLCALSPNN- 139 (391)
T ss_pred ceEEEEEcccCceEEEEe-cCCceEEEEEccce---EEEEEcc-cEEEEecccce--eehhhhccCCCccceEeeccCC-
Confidence 345666666666665554 45689999998743 5555554 49999999887 444443 3555677777777
Q ss_pred CCCEEEEEe--CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe-EEEEeCCCCCccccc
Q 046899 251 DVNLILTGS--ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI-LNIWDHEKIGEKQDY 327 (407)
Q Consensus 251 ~~~~l~tg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~ 327 (407)
.+.++|--+ ..|.|.+||..+ .+++..+.+|++++.+++|+++|. +|||+|+.|+ |||+.+..++.+..|
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~n------l~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTIN------LQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred CCceEEecCCCCCceEEEEEccc------ceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeee
Confidence 666776533 358999999999 899999999999999999999999 5699999887 799999999999888
Q ss_pred ccCCCc--ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc
Q 046899 328 GELKYP--IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI 382 (407)
Q Consensus 328 ~~~~~~--v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~ 382 (407)
.....+ |.+++|++| +.+|.+.+..++|+|+.+.+..
T Consensus 213 RRG~~~~~IySL~Fs~d------------------s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPD------------------SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eCCceeeEEEEEEECCC------------------CCeEEEecCCCeEEEEEecccc
Confidence 765444 678899998 7788899999999999997533
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=1.6e-15 Score=134.51 Aligned_cols=168 Identities=17% Similarity=0.267 Sum_probs=130.7
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA 159 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
..|.+.|.+-+|+| +|.=|+|++.||.|++|.-... ..
T Consensus 101 ~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGM-LR---------------------------------------- 138 (737)
T KOG1524|consen 101 SAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGM-LR---------------------------------------- 138 (737)
T ss_pred hhhhhhhhhcccCC-CCceeeeecCCceEEEEeccch-HH----------------------------------------
Confidence 36999999999999 8888999999999999985432 11
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
.++-....+|.|++|.|+..+.+.+.+ +.+.|=-+.... ......+|.
T Consensus 139 ----------------------------Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~--k~i~WkAHD 186 (737)
T KOG1524|consen 139 ----------------------------STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS--KIIRWRAHD 186 (737)
T ss_pred ----------------------------HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc--ceeEEeccC
Confidence 112234568999999999866666654 567766666555 456778999
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
+-|.+++|++ ..+++++|+.|-..++||.. +.++.+-..|+.+|++++|.|+. +++.+| -++.|+=..
T Consensus 187 GiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~ITSva~npd~--~~~v~S-~nt~R~~~p- 254 (737)
T KOG1524|consen 187 GLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEYAITSVAFNPEK--DYLLWS-YNTARFSSP- 254 (737)
T ss_pred cEEEEeecCc-cccceeecCCceeEEeeccc-------CcccccCChhccceeeeeecccc--ceeeee-eeeeeecCC-
Confidence 9999999999 78999999999999999987 68898888999999999999994 555666 456662111
Q ss_pred CCCcccccccCCCcccCCCCcCcc
Q 046899 320 KIGEKQDYGELKYPIIHPAYSSDM 343 (407)
Q Consensus 320 ~~~~~~~~~~~~~~v~~~~~s~d~ 343 (407)
..+.|..++||+|.
T Consensus 255 ----------~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 255 ----------RVGSIFNLSWSADG 268 (737)
T ss_pred ----------CccceEEEEEcCCC
Confidence 23456778898883
No 196
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=2.6e-13 Score=127.01 Aligned_cols=289 Identities=22% Similarity=0.387 Sum_probs=196.5
Q ss_pred CccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCcccccCcCCCCC
Q 046899 52 TYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVLGAADSHP 130 (407)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~ 130 (407)
..++.+++|... .+.........|...|..+.|+| ++..+++++. |+.+++|+.........+.+|...+.
T Consensus 131 ~~d~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 131 SLDGTVKLWDLS-------TPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred CCCccEEEEEec-------CCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence 336678888211 12345566668999999999999 6768888875 99999999987555444443322111
Q ss_pred ---------------CCCCcEEEEeccccccc---cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc-eeeEe
Q 046899 131 ---------------DLDQSVVLWSIQDHVSA---LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-RGKYL 191 (407)
Q Consensus 131 ---------------~~d~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~ 191 (407)
..|+.+.+|+....... +..+.... ..........+++++.++.+++|+...... ...+.
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 22888999987744322 22333332 112222224566899999999999987665 44556
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEE-eCCCcEEEEe
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTG-SADNSIHMFD 268 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd 268 (407)
.|...|.++.|+|++ ..+++++.|+.+++||.++.. ..... ..|...+..+.+ +.++..++.+ ..|+.+.+|+
T Consensus 282 ~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 282 GHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK--LLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred cCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc--eEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeee
Confidence 788999999999977 567778889999999988776 33333 377778999999 5243555555 6789999999
Q ss_pred CCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccc
Q 046899 269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIET 348 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~ 348 (407)
+.. ........... .+..+.+.+ ....+..+..++.+.+|+................+....++++
T Consensus 358 ~~~------~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 423 (466)
T COG2319 358 LRT------GKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD------ 423 (466)
T ss_pred cCC------CceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCC------
Confidence 988 44333333222 289999999 6434323788999999999987666555543333333333333
Q ss_pred cceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..+++++.+..+++|+..
T Consensus 424 ------------~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 424 ------------GKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ------------CcEEEEecCCCcEEEEecc
Confidence 5667778888899999987
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-14 Score=140.88 Aligned_cols=272 Identities=14% Similarity=0.164 Sum_probs=175.0
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
...+..|...|..++.++..+.+++||+.||+|++||..+..... .. -+....|+..+. ..
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s----~rS~ltys~~~s---------r~ 1101 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------GS----ARSELTYSPEGS---------RV 1101 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------ce----eeeeEEEeccCC---------ce
Confidence 345556999999999998777999999999999999987542210 00 123334443221 11
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCc--Cce-----eeEeec-ccCE-EEEEECCCCCc-EEEEEeCCCcEEEEEcC
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSI--GAR-----GKYLGH-EDTV-EDVQFCPSSAQ-EFCSVGDDSCLILWDAR 225 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~-----~~~~~~-~~~v-~~l~~~~~~~~-~l~s~~~dg~i~iwd~~ 225 (407)
...........++.++.||.+++.++... +.. .....+ .+.+ ..-+|...... .++.+...+.|..||++
T Consensus 1102 ~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1102 EKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 12222333455777889999988776552 111 111111 2233 33344433223 78888889999999999
Q ss_pred CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CCCCEEEEEEcCCCC---
Q 046899 226 SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HSAAVLCVQWSPDKS--- 301 (407)
Q Consensus 226 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~--- 301 (407)
+.............+.|++++.+| .++++++|+..|.+.+||+|- +.++..+.- +..+++.+..+|-.+
T Consensus 1182 ~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF------~~~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF------RVPILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred hhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec------CceeecccCcccCCcceEEeeccCCCCc
Confidence 876322223334457899999999 899999999999999999998 788877753 557888888877543
Q ss_pred CEEEEee-CCCeEEEEeCCCCCcccccccC-CCcccC--CCC----cCcchhccccceeee-eEeeCccceeeeEEEeee
Q 046899 302 SVFGSSA-EDGILNIWDHEKIGEKQDYGEL-KYPIIH--PAY----SSDMLDIETKLLTSI-GMHLIHGRLLVCLTMVKV 372 (407)
Q Consensus 302 ~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~-~~~v~~--~~~----s~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~d~~ 372 (407)
..+++++ ..+.|.+|++.++.+-..+... +.+... ++- +|+ ....+ .....-+..+++|+.|..
T Consensus 1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~-------~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPD-------SLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCC-------cccceeeecccCCceeeecCCccc
Confidence 4444444 5788999999998766666554 222111 111 122 11111 222223567889999999
Q ss_pred EEEeeccc
Q 046899 373 LEIWRMID 380 (407)
Q Consensus 373 i~iwd~~~ 380 (407)
||.||...
T Consensus 1328 IR~wD~~~ 1335 (1431)
T KOG1240|consen 1328 IRKWDPTR 1335 (1431)
T ss_pred eeeccCCC
Confidence 99999974
No 198
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.6e-14 Score=129.42 Aligned_cols=280 Identities=13% Similarity=0.188 Sum_probs=188.4
Q ss_pred ceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCC-CC---------------CCcE
Q 046899 73 FVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHP-DL---------------DQSV 136 (407)
Q Consensus 73 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~---------------d~~i 136 (407)
.+..++.++|....+.|..+|+...++|||.+.-.|++||+...... +.-|...-+ .. |++|
T Consensus 41 rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 41 RIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred HHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCcee
Confidence 34556667899999999999965667889999999999999865322 111111100 00 3333
Q ss_pred EEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC
Q 046899 137 VLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD 216 (407)
Q Consensus 137 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d 216 (407)
.+..-.+....... |.....+........+..++....+.-+++..|..+..+....+.++++..++.. .+|++|+.+
T Consensus 119 efHak~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~ 196 (703)
T KOG2321|consen 119 EFHAKYGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTED 196 (703)
T ss_pred eehhhcCeeeeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEecccC
Confidence 33221111111111 1111222333444556677778888888999999999998888999999999988 799999999
Q ss_pred CcEEEEEcCCCCCCce----eeecccCc-----ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-C
Q 046899 217 SCLILWDARSGSTPAV----KVEKAHNA-----DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-G 286 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~----~~~~~~~~-----~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 286 (407)
|.|..||.+..+.... .....|.+ .|+++.|+. +|-.+++|+.+|.|.|||+|. .+++..-. +
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa------~~pl~~kdh~ 269 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRA------SKPLLVKDHG 269 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEccc------CCceeecccC
Confidence 9999999998762111 11222333 499999998 799999999999999999999 55554432 3
Q ss_pred CCCCEEEEEEcCCCCC-EEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceee
Q 046899 287 HSAAVLCVQWSPDKSS-VFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV 365 (407)
Q Consensus 287 h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~ 365 (407)
..-+|..+.|.+.+.. .++|. ....++|||-.+++....++.... +..+++-|+ ++.++
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~------------------sGm~f 329 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD-LNDFCFVPG------------------SGMFF 329 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCC-cCceeeecC------------------CceEE
Confidence 4568999999776322 33343 467899999999888777664333 555555444 77777
Q ss_pred eEEEeeeEEEeecccccc
Q 046899 366 CLTMVKVLEIWRMIDLIY 383 (407)
Q Consensus 366 ~~~~d~~i~iwd~~~~~~ 383 (407)
.+..++.+..|=+..+..
T Consensus 330 ~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSLGP 347 (703)
T ss_pred EecCCCcceeEEccccCC
Confidence 887887777665554333
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=3e-13 Score=122.77 Aligned_cols=277 Identities=8% Similarity=0.114 Sum_probs=160.2
Q ss_pred ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEe-eCCCcEEEEeCcCCCCcccccCcCCC
Q 046899 50 QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATH-TDSPDVLIWDVEAQPNRHAVLGAADS 128 (407)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~ 128 (407)
+...++.+.+| ++.. . ......+.+.+.+....++++| ++++|+++ ..++.|.+|++...............
T Consensus 7 ~~~~~~~I~~~---~~~~--~-g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 7 ASPESQQIHVW---NLNH--E-GALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred EcCCCCCEEEE---EECC--C-CceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC
Confidence 34567778888 3321 1 2334455556667788999999 77776555 45789999999732111111000000
Q ss_pred CCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC----ceeeEeecccCEEEEEECC
Q 046899 129 HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG----ARGKYLGHEDTVEDVQFCP 204 (407)
Q Consensus 129 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~ 204 (407)
..+..+.+.+.++. .+++...++.+.+|++.... .+..+ .+.....+++++|
T Consensus 80 ---------------------~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p 135 (330)
T PRK11028 80 ---------------------GSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDP 135 (330)
T ss_pred ---------------------CCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCC
Confidence 00111111112211 12222335666777664321 22222 2234467789999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCc-----eeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCC
Q 046899 205 SSAQEFCSVGDDSCLILWDARSGSTPA-----VKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVG 278 (407)
Q Consensus 205 ~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~ 278 (407)
++..++++...++.|.+||+++..... .... ........+.|+| +++++++++. ++.|.+||++... +..
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~--~~~ 211 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPH--GEI 211 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCC--CCE
Confidence 995555666678999999998633100 0111 1234467899999 8888887776 8999999997411 002
Q ss_pred CceeeecCC------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC---CCcccCCCCcCcchhcccc
Q 046899 279 SPIHKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL---KYPIIHPAYSSDMLDIETK 349 (407)
Q Consensus 279 ~~~~~~~~h------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~d~~~~~~~ 349 (407)
+.+.++..+ ......+.++|++++++++...++.|.+|++........+.++ ......+.++||
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d------- 284 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS------- 284 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC-------
Confidence 233333221 1233468999999998866566899999999654322222211 123345667666
Q ss_pred ceeeeeEeeCccceeeeEEE-eeeEEEeecc
Q 046899 350 LLTSIGMHLIHGRLLVCLTM-VKVLEIWRMI 379 (407)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~ 379 (407)
+.+|+++.. +++|.||++.
T Consensus 285 -----------g~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 285 -----------GKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred -----------CCEEEEEEccCCcEEEEEEc
Confidence 777776554 7899999885
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=1.3e-14 Score=132.02 Aligned_cols=262 Identities=12% Similarity=0.140 Sum_probs=186.9
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecccccccccc
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSALAA 150 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~~~ 150 (407)
.|+.++|-| +|..|+.+.. ..+.+||.+.+....++.+|.+.+.+. |..+.+|...-....-..
T Consensus 14 ci~d~afkP-DGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKP-DGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS 91 (1081)
T ss_pred chheeEECC-CCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec
Confidence 899999999 5554444433 389999999999999999988765443 888999986544333334
Q ss_pred CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
+.+.+.++.+++....+++.+ -...-+|....... ...+ ....|.+.+|..+| .+|+.|-.||+|.+-+-......
T Consensus 92 H~D~IQCMsFNP~~h~LasCs-LsdFglWS~~qK~V-~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCS-LSDFGLWSPEQKSV-SKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcc-hhhccccChhhhhH-Hhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcce
Confidence 555555666666555555433 33345565443222 2221 34578899999999 89999999999999875443322
Q ss_pred ceeeecccCcceEEEEecCCCC----CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899 231 AVKVEKAHNADIHCVDWNPHDV----NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~~~----~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s 306 (407)
.+...-+..++|.+++|+|..+ ..+++.....++.++.+. ++.+..-+.-.-...|+.+.++|.+++ .
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~r~L~FdP~CisYf~NGEy~L-i 239 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKDRALNFDPCCISYFTNGEYIL-L 239 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeecccccCCCCchhheeccCCcEEE-E
Confidence 2233345778999999999432 467888888888888776 344443333334457899999999986 7
Q ss_pred eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 307 SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 307 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
|+.|+.+++|- +.+-.+.+....+..|+.++..|+ +..++.|+.||+|--|++.
T Consensus 240 GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN------------------sQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 240 GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN------------------SQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC------------------CceEEEEEccCeeehhhhH
Confidence 88899999995 556667777777888888777776 8899999999999999885
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.7e-14 Score=122.04 Aligned_cols=175 Identities=20% Similarity=0.226 Sum_probs=134.5
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899 198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV 277 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~ 277 (407)
.+++|+.+| ..+++|+.||++|+|+..+.. .+.....|...|.++.|+| |+.+|++-+.| ..+||+.++
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~------ 216 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNT------ 216 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEecc------
Confidence 789999998 799999999999999977666 4667778999999999999 99999999999 899999999
Q ss_pred CCceeeecC--CCCCEEEEEEcCCC---C-CEEEEeeCCCeEEEEeCCCCCc-----ccccccCCCcccCCCCcCcchhc
Q 046899 278 GSPIHKFEG--HSAAVLCVQWSPDK---S-SVFGSSAEDGILNIWDHEKIGE-----KQDYGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 278 ~~~~~~~~~--h~~~v~~v~~~~~~---~-~ll~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~s~d~~~~ 346 (407)
+.++..... .......+.|+.++ . ++++....-+.|+.||+..... ..........|++++.|+|
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d---- 292 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD---- 292 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC----
Confidence 666665542 33456667787666 2 2444555567777777664332 2222333446777888777
Q ss_pred cccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHH-HhhcccceeEeeccC
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAE-LDKFKSHIFGCDKSC 407 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~ 407 (407)
+.+++-|+.||.|-|++.. +-++++. -+.|...|+.|.|||
T Consensus 293 --------------Gkf~AlGT~dGsVai~~~~------~lq~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 293 --------------GKFLALGTMDGSVAIYDAK------SLQRLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred --------------CcEEEEeccCCcEEEEEec------eeeeeEeehhhheeeeeeEEEcC
Confidence 9999999999999999997 4444443 347999999999997
No 202
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=8.6e-14 Score=119.24 Aligned_cols=176 Identities=20% Similarity=0.309 Sum_probs=136.3
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCC--CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDS--PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
.-...+..|.-++....++|+||.. ..++|||+... .++|...+-.
T Consensus 146 a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-------------------~qiw~aKNvp------------- 193 (412)
T KOG3881|consen 146 ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-------------------KQIWSAKNVP------------- 193 (412)
T ss_pred ecCCceeeeccCCCCCceEecCchhcccceeeeecccc-------------------eeeeeccCCC-------------
Confidence 3446788888888888899999998 88999999754 2344332100
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
... . .+. -.-.++++.|.+. . +.|++++.-+.+++||.+.++.| +..+.
T Consensus 194 -nD~-----------------------L--~Lr-VPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRP-V~~fd 244 (412)
T KOG3881|consen 194 -NDR-----------------------L--GLR-VPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRP-VAQFD 244 (412)
T ss_pred -Ccc-----------------------c--cce-eeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcc-eeEec
Confidence 000 0 000 1124566777765 4 78999999999999999988765 56666
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
....+++++...| +++++++|..-|.+..||++. ++.+.. +++..+.|++|..+|.+++ +|++|-|..+||
T Consensus 245 ~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~tGsirsih~hp~~~~-las~GLDRyvRI 316 (412)
T KOG3881|consen 245 FLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGITGSIRSIHCHPTHPV-LASCGLDRYVRI 316 (412)
T ss_pred cccCcceeeeecC-CCcEEEEecccchhheecccC------ceeeccccCCccCCcceEEEcCCCce-EEeeccceeEEE
Confidence 6788899999999 999999999999999999998 666655 8889999999999999995 589999999999
Q ss_pred EeCCCCCccc
Q 046899 316 WDHEKIGEKQ 325 (407)
Q Consensus 316 wd~~~~~~~~ 325 (407)
+|+.+.+.+.
T Consensus 317 hD~ktrkll~ 326 (412)
T KOG3881|consen 317 HDIKTRKLLH 326 (412)
T ss_pred eecccchhhh
Confidence 9999955543
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=5.8e-16 Score=143.95 Aligned_cols=201 Identities=19% Similarity=0.317 Sum_probs=147.2
Q ss_pred cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899 184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS 263 (407)
Q Consensus 184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~ 263 (407)
.+.+..+.+|...|+|..|...| .++++|+.|..++||...+.. +.....+|.+.|+.++.+. +..++++++.|..
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--CLASCRGHSGDITDLAVSS-NNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchh--hhccCCCCccccchhccch-hhhhhhhcccCce
Confidence 34456677899999999999999 899999999999999998888 7889999999999999998 7789999999999
Q ss_pred EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-----CCCcccC--
Q 046899 264 IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-----LKYPIIH-- 336 (407)
Q Consensus 264 i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~-- 336 (407)
|++|.+.. +.++..+.+|++.|++++|+|- ++.+.||++++||.+- ..+...+. .+..+-.
T Consensus 256 IrvWrl~~------~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 256 IRVWRLPD------GAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred EEEEecCC------CchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccc-cccccCCCCCCcccccceeeee
Confidence 99999999 9999999999999999999995 3778899999999881 11111100 0000000
Q ss_pred -----CCCcC---c-------chhccccceeeeeEeeC--ccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccc
Q 046899 337 -----PAYSS---D-------MLDIETKLLTSIGMHLI--HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSH 399 (407)
Q Consensus 337 -----~~~s~---d-------~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 399 (407)
..|.. | +........--+|+... -...+++.-.+-.+++|++. +|++++.+.+|.+.
T Consensus 324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~------~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 324 FENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY------TGQLLHNLMGHSDE 397 (1113)
T ss_pred ccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc------cchhhhhhcccccc
Confidence 11100 0 00000000101111111 01233445556689999999 89999999999999
Q ss_pred eeEeecc
Q 046899 400 IFGCDKS 406 (407)
Q Consensus 400 v~~~~~s 406 (407)
++-+.|-
T Consensus 398 ~yvLd~H 404 (1113)
T KOG0644|consen 398 VYVLDVH 404 (1113)
T ss_pred eeeeeec
Confidence 9888764
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=2.3e-13 Score=113.74 Aligned_cols=230 Identities=14% Similarity=0.234 Sum_probs=165.3
Q ss_pred CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
.-|...-.|.++ ++.....+.+.|+ ......+....-.+..|...|++|.|.| ..+.|+|++.|..-.||.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy-----~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIY-----SMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEE-----EecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 346666688774 6666666667777 2233333444455557999999999999 777899999999999998
Q ss_pred CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee
Q 046899 113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG 192 (407)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 192 (407)
..++. +-++...+..
T Consensus 84 ~~~~~-----------------------------------------------------------------~WkptlvLlR 98 (361)
T KOG1523|consen 84 QPSGG-----------------------------------------------------------------TWKPTLVLLR 98 (361)
T ss_pred cCCCC-----------------------------------------------------------------eeccceeEEE
Confidence 74321 1123345556
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
+...++++.|+|.+ +.||+|+....|.+|-++.... .....-..+.+.|++++|+| ++-++++|+.|+.+|+|..-
T Consensus 99 iNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 99 INRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred eccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEe
Confidence 88899999999998 8999999999999998876541 11223345678899999999 88899999999999999742
Q ss_pred C-----CC---CCCC----CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCC
Q 046899 271 K-----LT---SDGV----GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHP 337 (407)
Q Consensus 271 ~-----~~---~~~~----~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~ 337 (407)
- .. .-+. ++++.++....+.|..+.|+|+|..| +-.+.|.++.+=|..... .++.......|..++
T Consensus 177 IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l-awv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~ 255 (361)
T KOG1523|consen 177 IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL-AWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSV 255 (361)
T ss_pred eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe-eEecCCCceEEeecCCCchhccchhhccCCceee
Confidence 1 00 0000 34445555567899999999999965 788999999999988764 345544444665555
Q ss_pred CC
Q 046899 338 AY 339 (407)
Q Consensus 338 ~~ 339 (407)
.|
T Consensus 256 ~~ 257 (361)
T KOG1523|consen 256 SW 257 (361)
T ss_pred Ee
Confidence 54
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.8e-13 Score=125.04 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=115.7
Q ss_pred EEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEE--eCCCC
Q 046899 198 EDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMF--DRRKL 272 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vw--d~~~~ 272 (407)
...+|+|+|..++++.+.+| .|.+||+.++. ...+..+...+....|+| +++.|+..+. ++...+| |+..
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~- 320 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING- 320 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC-
Confidence 35799999944444445555 48889998776 333344455678899999 8887776665 4555555 5544
Q ss_pred CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc
Q 046899 273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL 350 (407)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 350 (407)
+ ....+..+........|+|+|++|+.++..+ ..|.+||+.+++. ..+.. ......+.||||
T Consensus 321 -----g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpD-------- 384 (429)
T PRK03629 321 -----G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPN-------- 384 (429)
T ss_pred -----C-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCC--------
Confidence 3 2334444444567889999999875444433 3588899987643 33322 122346778888
Q ss_pred eeeeeEeeCccceeeeEEEee---eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 351 LTSIGMHLIHGRLLVCLTMVK---VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..|+..+.++ .+.++++. +.....+.+|.+.+...+|||
T Consensus 385 ----------G~~i~~~s~~~~~~~l~~~~~~-------G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 385 ----------GTMVIYSSSQGMGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----------CCEEEEEEcCCCceEEEEEECC-------CCCeEECccCCCCcCCcccCC
Confidence 88888877776 47777774 666677888999999999986
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.6e-13 Score=127.54 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=168.6
Q ss_pred EEeeCCCceEEEEEeCCCC--eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 78 KTIIHPGEVNRIRELPQNS--KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~--~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
.+-+|..++..+.+.|... .++.+++.||.|++||...+...+++..+... ..+.-. ..+.... .
T Consensus 52 ~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v----------~~~~~~-~~~a~~s--~ 118 (792)
T KOG1963|consen 52 SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV----------HALVYK-PAQADIS--A 118 (792)
T ss_pred hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce----------eEEEec-hhHhCcc--c
Confidence 4447999999999988655 57889999999999999988776655332111 111000 0000000 0
Q ss_pred cccccCCCCCcccc--ccCCCCCCCCCCCC--cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--
Q 046899 156 KSTASGGANSKNAS--KSGGNGDKPLESPS--IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-- 229 (407)
Q Consensus 156 ~~~~~~~~~~~~~~--~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-- 229 (407)
........-..+.. ....+.++-+.+.+ ......+.+|.. -.+|.+++.+ . +...-.+..+.+|+..+...
T Consensus 119 ~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~g-e-~~~i~~~~~~~~~~v~~~~~~~ 195 (792)
T KOG1963|consen 119 NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSG-E-FKGIVHMCKIHIYFVPKHTKHT 195 (792)
T ss_pred eeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCc-e-EEEEEEeeeEEEEEecccceee
Confidence 00000000000000 00001111011110 011111122322 3578888887 4 45555678899999887431
Q ss_pred CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
.....-..|...+++.+++| +++++|+|..||.|.+|.--....+ ......+..|...|++++|+++|.+|+ |||.
T Consensus 196 ~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~--~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~ 271 (792)
T KOG1963|consen 196 SSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDD--SETCTLLHWHHDEVNSLSFSSDGAYLL-SGGR 271 (792)
T ss_pred ccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccc--cccceEEEecccccceeEEecCCceEe-eccc
Confidence 11122235677789999999 9999999999999999964331110 345567788999999999999999986 9999
Q ss_pred CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 310 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+.+-+|.+.+++ .+-++....+|..+.+||| ++..+....|..|++-...
T Consensus 272 E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~d------------------s~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 272 EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPD------------------SDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred ceEEEEEeecCCC-cccccccCCeeEEEEEcCC------------------CCeEEEEecCceEEEEecc
Confidence 9999999999977 7777888999999999998 6667777778888888876
No 207
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.8e-13 Score=123.42 Aligned_cols=213 Identities=16% Similarity=0.181 Sum_probs=165.6
Q ss_pred CCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccC
Q 046899 93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSG 172 (407)
Q Consensus 93 ~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (407)
|+...++|....||.+|+||...++....+....... ..++-..|.+............... .........++.|..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s--~t~~~~~w~L~~~~s~~k~~~~~~~-~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS--GTCTYTKWGLSADYSPMKWLSLEKA-KKASLDTSMLVLGTP 78 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhcc--CcceeEEEEEEeccchHHHHhHHHH-hhccCCceEEEeecC
Confidence 4467899999999999999999887766654432221 1456677775543221111100000 001111245677889
Q ss_pred CCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899 173 GNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~ 250 (407)
.|.+.+++...++....+. .|.+.|+++.++.+- ..|.+++.|+.+..|+..... ........+..+.+++.+|
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~is~- 154 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLCISP- 154 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccce--eeeeeccCCCccceEEEcC-
Confidence 9999999999999888776 589999999998876 689999999999999999887 6777778888899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC-----CCCEEEEeeCCCeEEEEeCCC
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD-----KSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~ll~s~~~d~~i~vwd~~~ 320 (407)
|+..+++++ +.|++||+++ .+.+.+|.+|.++|++++|.-+ |.++|.+...+.-|.+|-+..
T Consensus 155 D~~~l~~as--~~ik~~~~~~------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIET------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccC------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 899999887 7899999999 8999999999999999999887 888988888888899998775
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.3e-12 Score=122.57 Aligned_cols=173 Identities=16% Similarity=0.099 Sum_probs=112.3
Q ss_pred EEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCc--EEEEeCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNS--IHMFDRRK 271 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~--i~vwd~~~ 271 (407)
..+.+|+|+|..++++.+.+| .|.+||+.+++ ...+..+.......+|+| +++.|+..+. +|. |.++|+..
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 346799999955555666665 59999998776 334445555556789999 8887776653 455 55566654
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccc
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETK 349 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~ 349 (407)
++ ...+..+.......+|+|+|++|+.+...++ .|.+||+.+++.. .+.. ......+.|+||
T Consensus 326 ------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spd------- 389 (433)
T PRK04922 326 ------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPN------- 389 (433)
T ss_pred ------CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCC-------
Confidence 33 3333323344557899999998754444333 6999999875543 3322 223456788888
Q ss_pred ceeeeeEeeCccceeeeEEEe---eeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 350 LLTSIGMHLIHGRLLVCLTMV---KVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..|+..+.+ +.|.+++.. +.....+..+.+.+...+||+
T Consensus 390 -----------G~~i~~~s~~~g~~~L~~~~~~-------g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 390 -----------GSMVLYATREGGRGVLAAVSTD-------GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -----------CCEEEEEEecCCceEEEEEECC-------CCceEEcccCCCCCCCCccCC
Confidence 6666655553 367777775 444556666677788888886
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=3.6e-13 Score=111.28 Aligned_cols=151 Identities=23% Similarity=0.411 Sum_probs=108.4
Q ss_pred EEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE--EeCCCcEEE
Q 046899 198 EDVQFCPSSAQEFCSVGD---------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT--GSADNSIHM 266 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t--g~~dg~i~v 266 (407)
..+.|+|+|..+++.... -+...+|.++....+.........++|.+++|+| +++.||+ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 367899998555555441 2456777776554333333233455799999999 7777654 446789999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC---CCeEEEEeCCCCCcccccccCCCcccCCCCcCcc
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDM 343 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 343 (407)
||++ .+++..+. ...++.+.|+|+|++|+ +++. .|.|.+||+++.+.+...... .++.++||||
T Consensus 88 yd~~-------~~~i~~~~--~~~~n~i~wsP~G~~l~-~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPd- 154 (194)
T PF08662_consen 88 YDVK-------GKKIFSFG--TQPRNTISWSPDGRFLV-LAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPD- 154 (194)
T ss_pred EcCc-------ccEeEeec--CCCceEEEECCCCCEEE-EEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCC-
Confidence 9997 47777775 46788999999999775 5543 467999999987777666533 3678899999
Q ss_pred hhccccceeeeeEeeCccceeeeEEE------eeeEEEeecc
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTM------VKVLEIWRMI 379 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~------d~~i~iwd~~ 379 (407)
+.++++++. |..++||++.
T Consensus 155 -----------------Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 155 -----------------GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -----------------CCEEEEEEeccceeccccEEEEEec
Confidence 777776654 6699999986
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.2e-14 Score=127.82 Aligned_cols=184 Identities=20% Similarity=0.331 Sum_probs=138.6
Q ss_pred ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC-CCCEEEEEeCCCcE
Q 046899 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLILTGSADNSI 264 (407)
Q Consensus 186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i 264 (407)
..+.+.+|++.|+|+.|+.+| .+|++|+.|-.+.|||.-..+. ....-.+|...|.++.|-|. +.+++++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~Kl-lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKL-LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcce-eeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 456788999999999999999 8999999999999999986552 44556799999999999884 34678899999999
Q ss_pred EEEeCCCCCCCCC----CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCc
Q 046899 265 HMFDRRKLTSDGV----GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYS 340 (407)
Q Consensus 265 ~vwd~~~~~~~~~----~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 340 (407)
++||+...+..++ .+....+..|...|..++-.|++++.|-+++.||+|+-+|++....... ..+-++..+.+.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p--~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP--DEDCPSILVNYN 197 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc--cccccHHHHHhc
Confidence 9999986443221 4566677789999999999999988889999999999999996433221 112222233333
Q ss_pred CcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 341 SDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
+++.. ...+-.......+++.|+.|.-.++||.
T Consensus 198 ~~lie-----lk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 198 PQLIE-----LKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hhhhe-----eeeeeecCCCCceEEecCCCchhhhhhh
Confidence 33211 1222333344568889999999999995
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=2.1e-14 Score=127.62 Aligned_cols=167 Identities=18% Similarity=0.244 Sum_probs=129.1
Q ss_pred cccccCCCCCCCCCCCCcCceeeEe----ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---CC---------
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYL----GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS---TP--------- 230 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~--------- 230 (407)
++.+-..|.+.+.|....+....+. -....|+|++|-|.+..+|+.+-.+|.+.+||..... .+
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 4445555666655554422111111 1246899999999887899999999999999874211 00
Q ss_pred --------------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEE
Q 046899 231 --------------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQW 296 (407)
Q Consensus 231 --------------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 296 (407)
.+.....-.+.|+.++|+| |+.+||+.+.||.+||||..+ .+++..++..-+...|++|
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt------~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDT------QELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccH------HHHHHHHHhhccceEEEEE
Confidence 0111111234788999999 999999999999999999998 7788888888889999999
Q ss_pred cCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899 297 SPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSS 341 (407)
Q Consensus 297 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 341 (407)
+|||+|| ++|++|.-|.||.+...+.+..=.+|..+|..++|.|
T Consensus 341 SPDGKyI-vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYI-VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEE-EecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999987 6999999999999999999999999999999999975
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.2e-13 Score=115.80 Aligned_cols=278 Identities=10% Similarity=0.111 Sum_probs=178.5
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD 127 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~ 127 (407)
+++|+.|...++|-..+.-. .+.|....+..-.|...|.|++|.. ....|.+|+.+++|.+.|+.+.+.+..+....
T Consensus 71 L~SGGDD~~~~~W~~de~~~-~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~- 147 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMV-RKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENN- 147 (609)
T ss_pred EeecCCcceeeeechHHHHh-hcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccC-
Confidence 78899999999993321111 1222222333334778999999988 77899999999999999999876544322111
Q ss_pred CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-ceee--EeecccCEEEEEECC
Q 046899 128 SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-ARGK--YLGHEDTVEDVQFCP 204 (407)
Q Consensus 128 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~--~~~~~~~v~~l~~~~ 204 (407)
..-.+|.+ .....+..+++.+.++.+.+||..... ++.. +.........+.|+|
T Consensus 148 ------~~~~VY~m-----------------~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 148 ------NRGDVYHM-----------------DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred ------cccceeec-----------------ccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 11112222 123335567777788888888876544 2222 223445678899999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCceee--ecccCc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 046899 205 SSAQEFCSVGDDSCLILWDARSGSTPAVKV--EKAHNA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGS 279 (407)
Q Consensus 205 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~ 279 (407)
..+.+|++.+..+-+-+||.+....+.++. +.+... .-.++.|+| +|+.|++--....-.+||+-.. .-
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~-----R~ 278 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQ-----RC 278 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecc-----cc
Confidence 999999999999999999999876543321 112222 236789999 7888877665566678888762 12
Q ss_pred ceeeecCCC-------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-----------------------ccccc
Q 046899 280 PIHKFEGHS-------AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-----------------------QDYGE 329 (407)
Q Consensus 280 ~~~~~~~h~-------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-----------------------~~~~~ 329 (407)
++..+. |. ..+.+++|..+.. ++||+.+=.|.+|.+.....- ..+.+
T Consensus 279 ~V~k~D-~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 279 FVLKSD-HNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred eeEecc-CCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 333332 32 2577788876655 479999999999988642111 12234
Q ss_pred CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 330 LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 330 ~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
|..-+..+.|+ .|...|++.+....++||.-
T Consensus 356 HRSv~NQVRF~------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 356 HRSVPNQVRFS------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccccceeec------------------CCcceEeccchhhheecccc
Confidence 44444444443 34777888788889999954
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.53 E-value=3.4e-13 Score=123.00 Aligned_cols=230 Identities=15% Similarity=0.153 Sum_probs=158.5
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-------------CCcEEEEecc
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------DQSVVLWSIQ 142 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------d~~i~~w~~~ 142 (407)
...+.+|.+-|++++|+. +|+.+|+|+.|+.|.+|+-.-...++ ..|.+.+.+. =....+|...
T Consensus 46 lqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~ 122 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE 122 (1081)
T ss_pred ccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence 334458999999999998 99999999999999999865432211 1122221111 2334455544
Q ss_pred ccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCC----cEEEEEeCC
Q 046899 143 DHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSA----QEFCSVGDD 216 (407)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~----~~l~s~~~d 216 (407)
.....-.....-+...+-.....+++.|-.+|+|.+-+....+.+..-+ +...+|.+++|+|... ..+++....
T Consensus 123 qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 123 QKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred hhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc
Confidence 3321111111112223334445668889999999887543333322222 4678999999999642 468888888
Q ss_pred CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEE
Q 046899 217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQW 296 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 296 (407)
.++.++.+.-.. +.......-...|+.+.+ +|.+++.|+.|+.+.+|-.. +-.+.++.....+|+.++.
T Consensus 203 qTLSFy~LsG~~---Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~-------GvrLGTvg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 203 QTLSFYQLSGKQ---IGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRD-------GVRLGTVGEQDSWIWTVQA 271 (1081)
T ss_pred ceeEEEEeccee---ecccccCCCCchhheecc-CCcEEEEccCCCceEEEeec-------CeEEeeccccceeEEEEEE
Confidence 888888876332 322333445567899999 89999999999999999654 6778888778899999999
Q ss_pred cCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 297 SPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 297 ~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+|+++++ +.|+.||+|-.|++-.
T Consensus 272 ~PNsQ~v-~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 272 KPNSQYV-VVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCceE-EEEEccCeeehhhhHH
Confidence 9999986 7999999999999754
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.1e-12 Score=110.91 Aligned_cols=258 Identities=10% Similarity=0.084 Sum_probs=172.6
Q ss_pred EeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 79 TIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
.......|..+.|.-+ ..+.|...+.|-.+..+.+....+...+ |++..- . -....+
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~----------------~~~~~~----~--l~~~~I 108 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL----------------DDAKTV----S--LGTKSI 108 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCcccccc----------------cccccc----c--cccccc
Confidence 3345667888887642 3345555546667777777765544332 111110 0 000000
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcC----ceeeEeecccCEEEEEECCCCCcEEEEEeCC--CcEEEEEcCCCCCCc
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIG----ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD--SCLILWDARSGSTPA 231 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~ 231 (407)
......+..++++.++|.+.+|..+.+. +...+. -...+..+.-++..+.++++|+.. ..+.+||+.+.+ .
T Consensus 109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--q 185 (412)
T KOG3881|consen 109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--Q 185 (412)
T ss_pred cchhhcCCEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccce--e
Confidence 0011122335556677777777665322 222332 235677777788887889999998 889999998874 2
Q ss_pred eeeeccc---------CcceEEEEecCCC--CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC
Q 046899 232 VKVEKAH---------NADIHCVDWNPHD--VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK 300 (407)
Q Consensus 232 ~~~~~~~---------~~~v~~l~~~~~~--~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 300 (407)
+..-..- .-.++.+.|-+ + ...||+++.-+.+++||.+.. ..|+.+|..-+.+|+++...|++
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q-----RRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ-----RRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc-----CcceeEeccccCcceeeeecCCC
Confidence 3222111 22456788877 5 789999999999999999964 58999998889999999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCcccc-cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 301 SSVFGSSAEDGILNIWDHEKIGEKQD-YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
..|+ +|..-+.+..+|++.++.+.. +.+..+.++++...|. ...+++++.|..|||+|+.
T Consensus 260 n~Iy-~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~------------------~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 260 NFIY-TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT------------------HPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cEEE-EecccchhheecccCceeeccccCCccCCcceEEEcCC------------------CceEEeeccceeEEEeecc
Confidence 9775 898999999999999887765 6665665544433332 5689999999999999998
Q ss_pred ccccCChHHHHHH
Q 046899 380 DLIYRPEEEVLAE 392 (407)
Q Consensus 380 ~~~~~~~~~~~~~ 392 (407)
+..++..
T Consensus 321 ------trkll~k 327 (412)
T KOG3881|consen 321 ------TRKLLHK 327 (412)
T ss_pred ------cchhhhh
Confidence 5555544
No 215
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=2.9e-12 Score=105.81 Aligned_cols=116 Identities=24% Similarity=0.452 Sum_probs=88.4
Q ss_pred ccCEEEEEECCCCCcEEEE--EeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---CcEEEEe
Q 046899 194 EDTVEDVQFCPSSAQEFCS--VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---NSIHMFD 268 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd 268 (407)
.++|.+++|+|++ +.|++ |..++.|.+||++ .+ .+..+ ....++.+.|+| +|++|++|+.+ |.|.+||
T Consensus 59 ~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~-~~--~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 59 EGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVK-GK--KIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCceEEEEECcCC-CEEEEEEccCCcccEEEcCc-cc--EeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEE
Confidence 4579999999999 55544 3457899999997 33 34444 356788999999 89999998754 6799999
Q ss_pred CCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC-----CCeEEEEeCCCCCccc
Q 046899 269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGILNIWDHEKIGEKQ 325 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~-----d~~i~vwd~~~~~~~~ 325 (407)
+++ .+.+.+.. |. .++.++|+|+|++++.+.+. |+.++||++. ++.+.
T Consensus 132 ~~~------~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 132 VRK------KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred CCC------CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 998 77877775 33 47899999999988644443 8999999986 34443
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=2.2e-14 Score=125.32 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=174.3
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
...+.-...|.++.|.. +.+++|.+-. .-+.|||-..-+ +..+..+.. + ....
T Consensus 164 ~~Ei~v~Etv~Dv~~LH-neq~~AVAQK-~y~yvYD~~GtE-lHClk~~~~----------v--------------~rLe 216 (545)
T KOG1272|consen 164 HFEINVMETVRDVTFLH-NEQFFAVAQK-KYVYVYDNNGTE-LHCLKRHIR----------V--------------ARLE 216 (545)
T ss_pred eeeeehhhhhhhhhhhc-chHHHHhhhh-ceEEEecCCCcE-EeehhhcCc----------h--------------hhhc
Confidence 33344556788888886 7778877765 578888866432 111111110 0 0011
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
|.+.. -.+++++..|.++..|+.+|+.+..+....+.+..++-+|-. ..+-+|...|+|.+|...... .+..+.
T Consensus 217 FLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~ske--PLvKiL 290 (545)
T KOG1272|consen 217 FLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKE--PLVKIL 290 (545)
T ss_pred ccchh---heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcc--hHHHHH
Confidence 12222 236778888999999999999999988888899999999988 789999999999999998777 566677
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
.|.++|.+|++++ +|++++|.+.|..++|||+|+ ...+.++.. ..+...+++|..| +| ..+....|.+|
T Consensus 291 cH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~------~~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw 359 (545)
T KOG1272|consen 291 CHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRN------FYQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIW 359 (545)
T ss_pred hcCCCcceEEECC-CCcEEeecccccceeEeeecc------ccccceeec-CCCcccccccccc--ce-eeecCCeeeee
Confidence 9999999999999 999999999999999999999 666666654 4567889999877 45 44556679999
Q ss_pred e-CCCC--Cccccccc--CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899 317 D-HEKI--GEKQDYGE--LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW 376 (407)
Q Consensus 317 d-~~~~--~~~~~~~~--~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw 376 (407)
- .-.+ ....-+.. ..++|.++.|.|- .| +-.|....|-.+.|+.|+.+...=-|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~-ED-----vLGIGH~~G~tsilVPGsGePN~Ds~ 418 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPY-ED-----VLGIGHAGGITSILVPGSGEPNYDSL 418 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccH-HH-----eeeccccCCceeEeccCCCCCCcchh
Confidence 4 2221 12222222 3458888988762 11 22334444556677888777644333
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=4.8e-12 Score=123.01 Aligned_cols=250 Identities=12% Similarity=0.084 Sum_probs=156.8
Q ss_pred ecccccCccceEEEEeecccCcccCCcceeeEEEe-eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC
Q 046899 46 PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTI-IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG 124 (407)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~ 124 (407)
+.+++++.||++|+|.......+. ......... ...+.+.++...+ +++.+|.|+.||.|++.+++.... .....
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~v~~~~id~~~~-~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGSVRVLRIDHYNV-SKRVA 1137 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCeEEEEEcccccc-cccee
Confidence 568999999999999555222111 222222222 3678899999888 889999999999999999986311 11111
Q ss_pred cCCCCCCC--CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEE
Q 046899 125 AADSHPDL--DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDV 200 (407)
Q Consensus 125 ~~~~~~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l 200 (407)
.....++. +|. +-++.. .........++.+...+.+..||........+++ ...+.|+++
T Consensus 1138 ~~~ri~n~~~~g~--vv~m~a--------------~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGV--VVSMHA--------------FTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred eeeecccccCCCc--eEEeec--------------ccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 11111111 111 111110 0011111256777888889999988776655544 245789999
Q ss_pred EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC--CEEEEEe--CCCcEEEEeCCCCCCCC
Q 046899 201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV--NLILTGS--ADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 201 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~l~tg~--~dg~i~vwd~~~~~~~~ 276 (407)
+.+|.+ +.++.|+..|.+.+||+|=+... ..-...+..+++.+..+|..+ ...++++ ..+.|.+|++.+
T Consensus 1202 ~idp~~-~WlviGts~G~l~lWDLRF~~~i-~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~----- 1274 (1431)
T KOG1240|consen 1202 VIDPWC-NWLVIGTSRGQLVLWDLRFRVPI-LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET----- 1274 (1431)
T ss_pred EecCCc-eEEEEecCCceEEEEEeecCcee-ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-----
Confidence 999998 89999999999999999966532 222234557888888887444 4444444 467899999988
Q ss_pred CCCceeeecCC-------------------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 277 VGSPIHKFEGH-------------------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 277 ~~~~~~~~~~h-------------------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
+.....+... .-......+...+. ++.+|+.|..||.||.......
T Consensus 1275 -g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1275 -GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred -CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcccc
Confidence 4444433321 11111222222333 4569999999999998875444
No 218
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=4.5e-12 Score=108.11 Aligned_cols=136 Identities=16% Similarity=0.263 Sum_probs=109.6
Q ss_pred CCCCCCCCcCceeeEee---cccCEEEEEECCCCCcEEEEEe--CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899 176 DKPLESPSIGARGKYLG---HEDTVEDVQFCPSSAQEFCSVG--DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~ 250 (407)
|.|+|+..++.+.++.. +...+.++++++.+ .+++--+ ..|.|.+||+.+-+ ....+..|.+.+-+++|++
T Consensus 108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~- 183 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSP- 183 (391)
T ss_pred EEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccce--eeeEEEecCCceeEEEECC-
Confidence 66777777777766643 44556777777766 5666432 36899999999888 6778889999999999999
Q ss_pred CCCEEEEEeCCCc-EEEEeCCCCCCCCCCCceeeecCC--CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 251 DVNLILTGSADNS-IHMFDRRKLTSDGVGSPIHKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 251 ~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
+|.+|||++..|+ ||||.+.. ++.+.+|+.. -..|.+++|+|++++| ++.|..++|++|.++...
T Consensus 184 ~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~~~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTYPVSIYSLSFSPDSQFL-AASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCceeeEEEEEEECCCCCeE-EEecCCCeEEEEEecccc
Confidence 9999999999985 79999988 9999999753 3468999999999966 677778999999998643
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=7.8e-12 Score=117.05 Aligned_cols=178 Identities=12% Similarity=0.066 Sum_probs=109.0
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTS 274 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~ 274 (407)
.+.+.+|+|+|..++++.+.+|...+|.+..... ....+..+........|+| +++.|+..+. +|...+|.+....
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~- 317 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASG- 317 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCC-CcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCC-
Confidence 3457899999954555677888877776543221 1334444555566788999 8887775554 5667777654311
Q ss_pred CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccccee
Q 046899 275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLT 352 (407)
Q Consensus 275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 352 (407)
+. ...+..+.......+|+|+|++|+.++..++ .|.+||+.+++... +... .....+.|+||
T Consensus 318 ---g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spd---------- 381 (427)
T PRK02889 318 ---GA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPN---------- 381 (427)
T ss_pred ---Cc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCC----------
Confidence 22 2222222334456889999998754433332 69999998765433 3222 23457788888
Q ss_pred eeeEeeCccceeeeEEEee---eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 353 SIGMHLIHGRLLVCLTMVK---VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 353 ~~~~~~~~~~~i~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..|+..+.++ .+.+-++. +.....+..+.+.+...+|||
T Consensus 382 --------g~~l~~~~~~~g~~~l~~~~~~-------g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 382 --------GRYILYATQQGGRSVLAAVSSD-------GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred --------CCEEEEEEecCCCEEEEEEECC-------CCceEEeecCCCCCCCCccCC
Confidence 66666655544 34444443 455555666777888888886
No 220
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.4e-12 Score=107.91 Aligned_cols=140 Identities=15% Similarity=0.178 Sum_probs=112.5
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~ 276 (407)
..++.|++.+ ..++++-.+|.+.+-+.........+..+.|.-+++...|+..+++++++|+.|+.+..||+|.+
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p---- 198 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP---- 198 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC----
Confidence 4578898888 66888888999997666555532345788999999999999888999999999999999999964
Q ss_pred CCCceee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 277 VGSPIHK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 277 ~~~~~~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.+.+.. .+.|...|.+|.-+|..++.++||+.|..|++||.++..+...-....+.|+.+..+|-
T Consensus 199 -~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 199 -KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred -cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence 344444 56699999999999887777789999999999999987766655555677777777665
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=1.6e-11 Score=102.92 Aligned_cols=178 Identities=12% Similarity=0.158 Sum_probs=132.5
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--ccCcceEEEEecCCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AHNADIHCVDWNPHD 251 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~ 251 (407)
..+.|||-...+++.++. -..+|.++.+.++. +++. ..++|.+|...+.-+ ....+. ..+..+.+++-.. +
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~-~ 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTS-N 147 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCC-C
Confidence 456788877777777774 67899999998854 4444 368999999874321 233332 2233444444333 3
Q ss_pred CCEEEE-EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe-EEEEeCCCCCccccccc
Q 046899 252 VNLILT-GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI-LNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 252 ~~~l~t-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~ 329 (407)
..+||. |-.-|.|+|-|+.... ..+...+.+|...|.|++.+.+|. ++||+|..|+ |||||..+++.++.+..
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~----~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTK----PNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcC----cCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 344443 4456899999998733 224578899999999999999999 5699999988 89999999999988764
Q ss_pred --CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899 330 --LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL 381 (407)
Q Consensus 330 --~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~ 381 (407)
....|++++|||| ..++++.|.-|+|+|+.+.+.
T Consensus 223 G~d~A~iy~iaFSp~------------------~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPN------------------SSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCchheEEEEEeCCC------------------ccEEEEEcCCCeEEEEEeecC
Confidence 3556999999999 889999999999999999753
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.2e-11 Score=105.29 Aligned_cols=208 Identities=15% Similarity=0.262 Sum_probs=138.7
Q ss_pred EEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC
Q 046899 41 SCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP 117 (407)
Q Consensus 41 s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 117 (407)
-+.|.+. ++.+..|..+|+| +...+.|.+. ...-+..|.||+|-|-.+..|+.|+. +-|.+|......
T Consensus 103 ~~aWhqH~~~fava~nddvVriy-----~ksst~pt~L---ks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIY-----DKSSTCPTKL---KSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEe-----ccCCCCCcee---cchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 3577775 6678888899999 2222222221 11346789999999988888999887 468999876432
Q ss_pred CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCE
Q 046899 118 NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTV 197 (407)
Q Consensus 118 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v 197 (407)
........ .+ .....+....+| .+|
T Consensus 174 n~~r~~~~---------------------------------------------~s---------~~~~qvl~~pgh-~pV 198 (445)
T KOG2139|consen 174 NANRNIRM---------------------------------------------MS---------THHLQVLQDPGH-NPV 198 (445)
T ss_pred cccccccc---------------------------------------------cc---------ccchhheeCCCC-cee
Confidence 11110000 00 000112233355 689
Q ss_pred EEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899 198 EDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~ 276 (407)
++++|+++| ..+++++. |..|.|||..++....+. ..-.+.+.-+.|+| |+.+|+++.-|+..++|+....
T Consensus 199 tsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~---- 270 (445)
T KOG2139|consen 199 TSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS---- 270 (445)
T ss_pred eEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehhccc----
Confidence 999999999 66777664 778999999998843222 33456788899999 9999999999999999965542
Q ss_pred CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
.....-.- ..+.|....|+|.|++||.+++.. =++|.+.-.++.
T Consensus 271 -wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~ 314 (445)
T KOG2139|consen 271 -WTKERWIL-GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGED 314 (445)
T ss_pred -ceecceec-cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCC
Confidence 33332222 355899999999999998777644 455665543333
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.3e-11 Score=114.38 Aligned_cols=221 Identities=14% Similarity=0.122 Sum_probs=138.2
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeC---CCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTD---SPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
....|.+.+...+|+| +++.|+..+. +..|.+||+.++...
T Consensus 196 ~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~----------------------------------- 239 (435)
T PRK05137 196 YLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE----------------------------------- 239 (435)
T ss_pred EEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-----------------------------------
Confidence 3446888999999999 7777777653 356777777654211
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCc--EEEEEcCCCCCCce
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC--LILWDARSGSTPAV 232 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~ 232 (407)
.+..+.+.+...+|+|+|..++++.+.++. |.+||+.++. .
T Consensus 240 ----------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~ 282 (435)
T PRK05137 240 ----------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---T 282 (435)
T ss_pred ----------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---e
Confidence 112233455678999999555566666665 6677887765 3
Q ss_pred eeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 233 KVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
..+..+........|+| +++.|+..+. +| .|+++|+.. .....+..+...+....|+|+|++|+.+...
T Consensus 283 ~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g-------~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 283 TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG-------SNPRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC-------CCeEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 44555666667899999 8888776653 33 577778765 3334444445567778999999987544432
Q ss_pred C--CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe------eeEEEeecccc
Q 046899 310 D--GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV------KVLEIWRMIDL 381 (407)
Q Consensus 310 d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d------~~i~iwd~~~~ 381 (407)
. ..|.+||+..... ..+.. ...+..+.|||| +..|+..+.+ ..|.+.|+.
T Consensus 355 ~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spD------------------G~~i~~~~~~~~~~~~~~L~~~dl~-- 412 (435)
T PRK05137 355 GGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPN------------------GRVIMFFRQTPGSGGAPKLYTVDLT-- 412 (435)
T ss_pred CCceEEEEEECCCCce-EeccC-CCCCCCCeECCC------------------CCEEEEEEccCCCCCcceEEEEECC--
Confidence 2 3688899865432 22322 224567888888 6666544332 256677765
Q ss_pred ccCChHHHHHHHhhcccceeEeeccC
Q 046899 382 IYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.+ ....+. ..+.+...+||+
T Consensus 413 ----g~-~~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 413 ----GR-NEREVP-TPGDASDPAWSP 432 (435)
T ss_pred ----CC-ceEEcc-CCCCccCcccCC
Confidence 22 223333 233466667764
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.3e-11 Score=116.41 Aligned_cols=255 Identities=15% Similarity=0.172 Sum_probs=169.1
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
.|.-.+++.+++| +++++|+|..||.|.+|.--..+.... ..++.-|. .+.+.....
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~-----------t~t~lHWH-----------~~~V~~L~f 259 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSE-----------TCTLLHWH-----------HDEVNSLSF 259 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccc-----------cceEEEec-----------ccccceeEE
Confidence 4777899999999 999999999999999997543211000 11222232 222333333
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-ceee-----
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-AVKV----- 234 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~----- 234 (407)
......+.+|+.++.+.+|.+.+++ .+-+.--..+|..+.++|++ .+.+....|+.|.+-...+.... .+..
T Consensus 260 S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~ 337 (792)
T KOG1963|consen 260 SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT 337 (792)
T ss_pred ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence 3344568999999999999999888 44455567899999999999 78888888999999877543300 0100
Q ss_pred ---ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC------------CCC----------------------
Q 046899 235 ---EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS------------DGV---------------------- 277 (407)
Q Consensus 235 ---~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~------------~~~---------------------- 277 (407)
.....+-.+.++++| ..+.++-.+..|.|.+||+.+... ++.
T Consensus 338 ~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred ccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 111234467788888 777788888889999998755331 000
Q ss_pred ---------------------------CCceee-ecCCCCCEEEEEEcCCCCC-EEEEeeCCCeEEEEeCCCCCccccc-
Q 046899 278 ---------------------------GSPIHK-FEGHSAAVLCVQWSPDKSS-VFGSSAEDGILNIWDHEKIGEKQDY- 327 (407)
Q Consensus 278 ---------------------------~~~~~~-~~~h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~- 327 (407)
..+... ...|...+...++.+..+. .++|++.||.+++|-+...+.....
T Consensus 417 E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~ 496 (792)
T KOG1963|consen 417 EARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS 496 (792)
T ss_pred eeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc
Confidence 000001 1135555555555443322 4579999999999998543333221
Q ss_pred ---------ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 328 ---------GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 328 ---------~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
..|..+++.++||.| | .+++.+.+++|.|||..+
T Consensus 497 s~W~c~~i~sy~k~~i~a~~fs~d------------------G-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 497 SNWTCKAIGSYHKTPITALCFSQD------------------G-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cceEEeeeeccccCcccchhhcCC------------------C-cEEEEecCCEEEEecCCC
Confidence 136778889999887 4 677888999999999974
No 225
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.5e-12 Score=122.09 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=117.4
Q ss_pred CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---CcEEEEEcCCCCCCceeeecccCcceEEEEecC
Q 046899 173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~ 249 (407)
+..+.+||..... .+.+..|...+...+|+|+| +.|+.++.+ ..|.+||+.++....+....++ ...++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC
Confidence 4678888876554 45566778889999999999 667666543 4699999988763223333333 34689999
Q ss_pred CCCCEEEEEe-CCCcEEEE--eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899 250 HDVNLILTGS-ADNSIHMF--DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD 326 (407)
Q Consensus 250 ~~~~~l~tg~-~dg~i~vw--d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 326 (407)
+++.|+.+. .+|.+.|| |+.. ..+..+..+...+....|+|+|++|+.++..++...||++........
T Consensus 258 -DG~~La~~~~~~g~~~Iy~~d~~~-------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 258 -DGSRLAFASSKDGVLNIYVMGANG-------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred -CCCEEEEEEecCCcEEEEEEECCC-------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 888777654 68876665 5544 345566667777889999999998766666788888998754322212
Q ss_pred cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
...+.. ..+.|||| +..|+..+.+ .+.+||+.
T Consensus 330 ~l~~~~--~~~~~SpD------------------G~~ia~~~~~-~i~~~Dl~ 361 (429)
T PRK01742 330 LVGGRG--YSAQISAD------------------GKTLVMINGD-NVVKQDLT 361 (429)
T ss_pred EecCCC--CCccCCCC------------------CCEEEEEcCC-CEEEEECC
Confidence 212222 45778888 6777666555 45568886
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=4e-12 Score=107.42 Aligned_cols=277 Identities=14% Similarity=0.177 Sum_probs=162.7
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC-----cccccCcCCCCCC-------------------------
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN-----RHAVLGAADSHPD------------------------- 131 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~------------------------- 131 (407)
..+-|.++.|.- .|++||||..+|.|.++.-..... ...++.|...---
T Consensus 24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 456788999887 999999999999999997554321 1122222211000
Q ss_pred ---CCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC------cCceeeEe-ecccCEEEEE
Q 046899 132 ---LDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS------IGARGKYL-GHEDTVEDVQ 201 (407)
Q Consensus 132 ---~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~------~~~~~~~~-~~~~~v~~l~ 201 (407)
.|.++++|.+........... ....+. .+.-..+++--... ..+.+.+. +|.--|++|.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~----~~~~~~-------~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYN----LPEEGP-------PGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred EecCCcceeeeeeecccccccccc----ccccCC-------CCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 088999998876533221110 000000 00001111100000 11222222 5888999999
Q ss_pred ECCCCCcEEEEEeCCCcEEEEEcCCCCCCc-eeeecc-----cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC-
Q 046899 202 FCPSSAQEFCSVGDDSCLILWDARSGSTPA-VKVEKA-----HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS- 274 (407)
Q Consensus 202 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~-----~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~- 274 (407)
++.++ ..++++ .|-.|.+|++.-..... +.-... ...-|++..|+|...++|+-.+..|+|++-|+|...-
T Consensus 172 ~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 172 VNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred ecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 99998 556554 68999999987544211 112222 2356889999998888999999999999999994210
Q ss_pred CC---------CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-CCcccccccCCCcccCCCCcCcch
Q 046899 275 DG---------VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-IGEKQDYGELKYPIIHPAYSSDML 344 (407)
Q Consensus 275 ~~---------~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~ 344 (407)
+. .+....-|.+--..|.++.|+++|+|++ +-. =-+|++||+.. .+.+.++..|..--..++- +
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~---l- 323 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCS---L- 323 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHhHHHHHHH---H-
Confidence 00 0001111122235799999999999876 432 37999999954 4455666555432111110 0
Q ss_pred hccccceee--eeEeeCccceeeeEEEeeeEEEeecc
Q 046899 345 DIETKLLTS--IGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 345 ~~~~~~~~~--~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.....+.. -..+.|.+..+.+|+...-+++++..
T Consensus 324 -YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 324 -YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred -hhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 00111212 24666777899999999999999964
No 227
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=1.1e-11 Score=102.77 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=102.6
Q ss_pred ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
.++.+++|+.++...+|+...++++.+|+.|+.+..||+|.+..-.....+-|...|.+|.-+|..+.+++||++|..|+
T Consensus 157 ~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~ 236 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIR 236 (339)
T ss_pred ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccccee
Confidence 44577889999999999999889999999999999999995542223336678999999999987899999999999999
Q ss_pred EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
+||.|++ ++|+..-.. .+.|+.+.++|.-...+..++.-+-.+|-+.+..
T Consensus 237 ~~DtRnm-----~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 237 VLDTRNM-----GKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eeehhcc-----cCccccCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 9999976 567765543 4789999999965433334444455777777653
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=1.4e-10 Score=97.27 Aligned_cols=165 Identities=12% Similarity=0.218 Sum_probs=113.1
Q ss_pred eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC-CcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899 75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP-NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG 153 (407)
Q Consensus 75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~ 153 (407)
.+...+.-..+|.+|.+.+ + .|+..- .+.|.||.+.... .+..+.....+ .| +....
T Consensus 86 ~~i~el~f~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP----kG-lC~~~------------- 143 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP----KG-LCSLC------------- 143 (346)
T ss_pred cEEEEEEeccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhheeeeecccCC----Cc-eEeec-------------
Confidence 3555556788999999765 3 455554 4699999998542 22222221111 11 11111
Q ss_pred CCcccccCCCCCcccc-ccCCCCCCCCCCCCcCc--eeeEeecccCEEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCC
Q 046899 154 SAKSTASGGANSKNAS-KSGGNGDKPLESPSIGA--RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC-LILWDARSGST 229 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~ 229 (407)
.......++. |..-|.++|.|+...+. .....+|...|.|++.+.+| .++||+|..|+ |||||..++.
T Consensus 144 ------~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~- 215 (346)
T KOG2111|consen 144 ------PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGT- 215 (346)
T ss_pred ------CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCc-
Confidence 0000111111 44557777777655444 46778999999999999999 89999999998 7999999998
Q ss_pred Cceeeec--ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 230 PAVKVEK--AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 230 ~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
.+..+. .....|.+|+|+| +..+||++++.|++.||.++.
T Consensus 216 -~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 216 -LLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -EeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 444443 3356899999999 999999999999999999876
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=1.8e-11 Score=103.53 Aligned_cols=262 Identities=12% Similarity=0.188 Sum_probs=167.7
Q ss_pred EEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC----CC
Q 046899 43 RWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ----PN 118 (407)
Q Consensus 43 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~----~~ 118 (407)
.-.|.+.+.+.|.++|+|... +.....|.+... -..+++++.+.+ +...|+.|-..|++.-+.+... ..
T Consensus 34 ~~e~gv~~~s~drtvrv~lkr--ds~q~wpsI~~~----mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~ 106 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKR--DSGQYWPSIYHY----MPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTF 106 (404)
T ss_pred cCCCCeEEccccceeeeEEec--cccccCchhhhh----CCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcch
Confidence 334567788999999999654 223333333222 357899999988 7788999999999999876543 23
Q ss_pred cccccCcCCCCCCCCCcEEEEeccccc-------cccccC--C-C---CCc-ccc----cCCCCCccccccCCCCCCCC-
Q 046899 119 RHAVLGAADSHPDLDQSVVLWSIQDHV-------SALAAE--P-G---SAK-STA----SGGANSKNASKSGGNGDKPL- 179 (407)
Q Consensus 119 ~~~~~~~~~~~~~~d~~i~~w~~~~~~-------~~~~~~--~-~---~~~-~~~----~~~~~~~~~~~~~~~~i~i~- 179 (407)
.+....|...+. ..++++...- ..+..+ . + +.. +.. ...+......|...+.+...
T Consensus 107 ~r~~~~h~~~v~-----~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr 181 (404)
T KOG1409|consen 107 LKDYLAHQARVS-----AIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLK 181 (404)
T ss_pred hhhhhhhhccee-----eEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEE
Confidence 333334443321 1222222110 000000 0 0 000 000 00000122234455555443
Q ss_pred -CCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899 180 -ESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 180 -d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
.......+.++.+|.+.+.+++|.|.. .+|.+|..|..+.+||+--..- ......+|...|..+..-+ -.+.+.++
T Consensus 182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~-~t~~l~S~ 258 (404)
T KOG1409|consen 182 LEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ-HTRQLISC 258 (404)
T ss_pred EeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh-hheeeeec
Confidence 335566788889999999999999987 7999999999999999975542 4567789999999998887 67889999
Q ss_pred eCCCcEEEEeCCCCCCCCC-------------------------------------------------------------
Q 046899 259 SADNSIHMFDRRKLTSDGV------------------------------------------------------------- 277 (407)
Q Consensus 259 ~~dg~i~vwd~~~~~~~~~------------------------------------------------------------- 277 (407)
+.||.|.+||++....+..
T Consensus 259 ~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~ 338 (404)
T KOG1409|consen 259 GEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFS 338 (404)
T ss_pred cCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeE
Confidence 9999999999764331000
Q ss_pred ---------------CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 278 ---------------GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 278 ---------------~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
..++..+..-...|+.+.+...-. +|+|+|.|..|+|||++.
T Consensus 339 vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlg-lLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 339 VRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLG-LLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEecccchhhhcCCCCccccccccccceeEEEhhhhcc-ceeecCCceEEEEEechh
Confidence 122333333344688888887766 457999999999999986
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5e-12 Score=107.55 Aligned_cols=184 Identities=16% Similarity=0.250 Sum_probs=129.3
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
+..+..++|++.- ..|+++..|-.|++||-.... + ..........|+|++|-|..+..|+.|+..| |.+|......
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~ksst~-p-t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSSTC-P-TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCCCC-C-ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence 3467789999965 679999999999999987733 2 2222345678999999998888888888655 8899865422
Q ss_pred CCCC--------CCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcch
Q 046899 274 SDGV--------GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDML 344 (407)
Q Consensus 274 ~~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 344 (407)
.... ...+..-.+| .+|++++|.+||..+ ++++ .|..|+|||+.++....-..-.-+.++-+.||||
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l-~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd-- 249 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTIL-VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD-- 249 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEE-eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC--
Confidence 1100 1122233445 689999999999966 4665 5788999999997766555455566777889999
Q ss_pred hccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 345 DIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
++++.+.+.|+..++|+... ...+..-.- -.+.|....||+
T Consensus 250 ----------------gd~lfaAt~davfrlw~e~q-----~wt~erw~l-gsgrvqtacWsp 290 (445)
T KOG2139|consen 250 ----------------GDVLFAATCDAVFRLWQENQ-----SWTKERWIL-GSGRVQTACWSP 290 (445)
T ss_pred ----------------CCEEEEecccceeeeehhcc-----cceecceec-cCCceeeeeecC
Confidence 89999999999999996652 222222222 233666666654
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=1.4e-10 Score=109.02 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=108.8
Q ss_pred cCEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDR 269 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~ 269 (407)
..+.+++|+|++..++++.+.++ .|.+||+.++. ...+..+........|+| +++.|+..+. ++ .|.++|+
T Consensus 234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 34556889999954555555554 58888988765 333344544555778999 8887766554 33 5777777
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC---eEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG---ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 346 (407)
.. ++ ...+..+...+..+.|+|+|++++ .++.++ .|.+||+.+.. .+.+... .....+.|+||
T Consensus 310 ~~------~~-~~~l~~~~~~~~~~~~spdg~~i~-~~~~~~~~~~i~~~d~~~~~-~~~l~~~-~~~~~p~~spd---- 375 (417)
T TIGR02800 310 DG------GE-VRRLTFRGGYNASPSWSPDGDLIA-FVHREGGGFNIAVMDLDGGG-ERVLTDT-GLDESPSFAPN---- 375 (417)
T ss_pred CC------CC-EEEeecCCCCccCeEECCCCCEEE-EEEccCCceEEEEEeCCCCC-eEEccCC-CCCCCceECCC----
Confidence 65 33 344444556678899999999775 555554 78999988743 3333322 22345678887
Q ss_pred cccceeeeeEeeCccceeeeEEEee---eEEEeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
+..|+..+.++ .+.+.+.. +.....+..+.+.+...+||
T Consensus 376 --------------g~~l~~~~~~~~~~~l~~~~~~-------g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 376 --------------GRMILYATTRGGRGVLGLVSTD-------GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred --------------CCEEEEEEeCCCcEEEEEEECC-------CceeeECCCCCCCcCCCCCC
Confidence 66666666554 45555543 44445555556667777775
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=8.5e-12 Score=119.54 Aligned_cols=184 Identities=20% Similarity=0.171 Sum_probs=139.9
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeeccc----CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHED----TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
+..++.+..+..+.+||............... ...-+.++++. -++++|+--+.|.+|+......+ . .+.+|.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p-~-~l~GHe 175 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKP-I-RLKGHE 175 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCc-c-eecccC
Confidence 34566677788888888777666555543221 11123345555 78999999999999999855433 2 567999
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
+.+.++.++. +++++++.++|.++|+|++.+ .+... +.-+|.+.|..+.|+|+ ++ +|++.|.+.++|+.
T Consensus 176 G~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s------~~~~~~~~fgHsaRvw~~~~~~n--~i-~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 176 GSIFSIVTSL-DGRYIASVSDDRSIRLWPIDS------REVLGCTGFGHSARVWACCFLPN--RI-ITVGEDCTCRVWGV 245 (967)
T ss_pred CceEEEEEcc-CCcEEEEEecCcceeeeeccc------ccccCcccccccceeEEEEeccc--ee-EEeccceEEEEEec
Confidence 9999999999 999999999999999999998 44443 66679999999999999 35 69999999999976
Q ss_pred CCCCcccccccCCC-cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 319 EKIGEKQDYGELKY-PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 319 ~~~~~~~~~~~~~~-~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.- ..+..+.+|.. .++.++..++ ...++++..||++++|++.
T Consensus 246 ~~-~~l~~y~~h~g~~iw~~~~~~~------------------~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 246 NG-TQLEVYDEHSGKGIWKIAVPIG------------------VIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cc-ceehhhhhhhhcceeEEEEcCC------------------ceEEEeeccCcchhhhhhh
Confidence 54 55667777654 3555555444 5678899999999999985
No 233
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.37 E-value=5.9e-11 Score=107.77 Aligned_cols=185 Identities=9% Similarity=0.114 Sum_probs=120.7
Q ss_pred cccCCCCCCCCCCCC-cC--ceeeEeecccCEEEEEECCCCCcEEE-EEeCCCcEEEEEcCC-CCCCceeeecccCcceE
Q 046899 169 SKSGGNGDKPLESPS-IG--ARGKYLGHEDTVEDVQFCPSSAQEFC-SVGDDSCLILWDARS-GSTPAVKVEKAHNADIH 243 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~-~~--~~~~~~~~~~~v~~l~~~~~~~~~l~-s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~ 243 (407)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++ ++|+ ++..++.|.+|++.. +........ .......
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 345667788887753 22 334443 34567789999999 5554 445689999999973 331111111 2334567
Q ss_pred EEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 244 CVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
.++++| +++++++++. ++.|.+|++..... ..+.+..+. +.....+++++|++++++++...++.|.+||+.+.+
T Consensus 84 ~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 84 HISTDH-QGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred EEEECC-CCCEEEEEEcCCCeEEEEEECCCCC--CCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 899999 8887777664 88999999974210 012333333 234567889999999998888888999999998744
Q ss_pred cccc-------cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE-eeeEEEeecc
Q 046899 323 EKQD-------YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMI 379 (407)
Q Consensus 323 ~~~~-------~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~ 379 (407)
.+.. ... .....++.|+|| +.++++... +++|.+|++.
T Consensus 160 ~l~~~~~~~~~~~~-g~~p~~~~~~pd------------------g~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 160 HLVAQEPAEVTTVE-GAGPRHMVFHPN------------------QQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred cccccCCCceecCC-CCCCceEEECCC------------------CCEEEEEecCCCEEEEEEEe
Confidence 3321 111 222345667666 777766655 7899999996
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=1.4e-11 Score=118.05 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=142.1
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN 174 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (407)
+...++.+..+..+.+||........++.+..... --...+|- .+...-.+++++.-+
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~---l~~~~~~g-------------------~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT---LYSSLIIG-------------------DSAEELYIASGSVFG 155 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEE---EEeEEEEe-------------------ccCcEEEEEeccccc
Confidence 44566677777788888877665554443321110 00111111 111122356677888
Q ss_pred CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCE
Q 046899 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNL 254 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 254 (407)
.+.+|+...-+.-..+.+|.+.|..+.|+.+| .++++.|+|.++++|++.+.+... -...+|+..|..+++.| . .
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~-n--~ 230 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLP-N--R 230 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC-cccccccceeEEEEecc-c--e
Confidence 88888876433333578999999999999999 899999999999999999988432 35569999999999998 4 9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 255 ILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 255 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
++|++.|.+.++|+.. ++.+..+.+|. ..+..++..++.. +.+|++.|+.+++||+....
T Consensus 231 i~t~gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eEEeccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence 9999999999999766 46677888875 4699999988777 55799999999999987643
No 235
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=1.2e-11 Score=114.45 Aligned_cols=271 Identities=17% Similarity=0.234 Sum_probs=177.2
Q ss_pred ceEEEeeeecccCCCeeEEEEeeccc-----ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeE
Q 046899 24 PVLYDWLANHNLVWPSLSCRWGPQLE-----QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKI 98 (407)
Q Consensus 24 ~~~y~~l~~~~~~~p~~s~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 98 (407)
|+-....++|-.+|..-..||.|.-+ ...+....-+| +..........+.+.+|...|+.+.|.|+....
T Consensus 55 p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw-----nlA~ss~~aIef~lhghsraitd~n~~~q~pdV 129 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW-----NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDV 129 (1081)
T ss_pred CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhh-----hhhcCCccceEEEEecCccceeccccCCCCCcc
Confidence 44444557788899999999988532 11112222244 333334445567778999999999999999999
Q ss_pred EEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCC
Q 046899 99 VATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKP 178 (407)
Q Consensus 99 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 178 (407)
|||++.|-.|..||+.+.. ..+..|+.
T Consensus 130 latcsvdt~vh~wd~rSp~----------------~p~ys~~~------------------------------------- 156 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPH----------------RPFYSTSS------------------------------------- 156 (1081)
T ss_pred eeeccccccceeeeccCCC----------------cceeeeec-------------------------------------
Confidence 9999999999999998652 12222221
Q ss_pred CCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899 179 LESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 179 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
-......++|+-..++.+|+ +..+-|.+||++.+..| ...+++|...|+.++|+......+.+.
T Consensus 157 --------------w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p-l~s~K~~vs~vn~~~fnr~~~s~~~s~ 220 (1081)
T KOG0309|consen 157 --------------WRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP-LCSLKGHVSSVNSIDFNRFKYSEIMSS 220 (1081)
T ss_pred --------------ccccCceeeecccCcchhhh-ccCCceEEEeccCCCcc-eEEecccceeeehHHHhhhhhhhhccc
Confidence 12234568888877666655 56788999999999875 556678999999999988777789999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE-EeeCCCeEEEEeCCC----------CCccccc
Q 046899 259 SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG-SSAEDGILNIWDHEK----------IGEKQDY 327 (407)
Q Consensus 259 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~-s~~~d~~i~vwd~~~----------~~~~~~~ 327 (407)
+.||+|++||..... .+.-++.. ...+|..-++.|-|...+. ---.+..+.+.+-++ .+.+.+|
T Consensus 221 ~~d~tvkfw~y~kSt----~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKST----TESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred CCCCceeeecccccc----cccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 999999999988743 22333332 4567888888886543211 111133444444332 2445667
Q ss_pred ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899 328 GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL 381 (407)
Q Consensus 328 ~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~ 381 (407)
.+|+..|...-| -.+..- .+-.....-.+++||-|.++|+|-+.+.
T Consensus 296 ~GH~D~V~eFlW-----R~r~e~---~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 296 VGHDDVVLEFLW-----RKRKEC---DGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cCcchHHHHHhh-----hhcccc---cCCCCccceeEEEeecCCceEeeeccHH
Confidence 777766544322 111110 0222222447999999999999998643
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.6e-10 Score=105.18 Aligned_cols=173 Identities=14% Similarity=0.079 Sum_probs=104.6
Q ss_pred EEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRRK 271 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~~ 271 (407)
+....|+|+|..++++.+.+| .|.++|+.++. ...+..+........|+| +++.++..+. +| .|.++|+..
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 345789999944444555555 58888998776 333444555566789999 7776665543 44 466677765
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccc
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETK 349 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~ 349 (407)
++. ..+...........|+|+|++|+.+...++ .|.++|+.+++. ..+.. ......+.||||
T Consensus 321 ------g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spd------- 384 (430)
T PRK00178 321 ------GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPN------- 384 (430)
T ss_pred ------CCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCC-------
Confidence 432 222222233446789999998765554444 588899987543 22222 122235678887
Q ss_pred ceeeeeEeeCccceeeeEEEe-e--eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 350 LLTSIGMHLIHGRLLVCLTMV-K--VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..|+..+.+ + .|.+.++. +.....+..+.+.+...+||+
T Consensus 385 -----------g~~i~~~~~~~g~~~l~~~~~~-------g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 385 -----------GTMLIYATRQQGRGVLMLVSIN-------GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -----------CCEEEEEEecCCceEEEEEECC-------CCceEECcCCCCCcCCCccCC
Confidence 6666654443 2 56666764 333344555566677778875
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3e-10 Score=106.79 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=104.9
Q ss_pred EEEECCCCCcEEEEEeCCCc--EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCCCCC
Q 046899 199 DVQFCPSSAQEFCSVGDDSC--LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRRKLT 273 (407)
Q Consensus 199 ~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~~~~ 273 (407)
..+|+|+|..++++.+.+|. |.++|+.+++ ...+..+.......+|+| +++.|+..+. ++ .|.++|+..
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~-- 339 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLAS-- 339 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC--
Confidence 57899999555556666775 7777887665 334444555667789999 7777765543 44 456667665
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccce
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLL 351 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~ 351 (407)
++. ..+..........+|+|+|++|+.+...++ .|.++|+.+++. ..+... .......|+||
T Consensus 340 ----g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spd--------- 403 (448)
T PRK04792 340 ----GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPN--------- 403 (448)
T ss_pred ----CCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCC---------
Confidence 333 333222223445789999998866655555 455577776543 222221 12234578887
Q ss_pred eeeeEeeCccceeeeEEEe-e--eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 352 TSIGMHLIHGRLLVCLTMV-K--VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 352 ~~~~~~~~~~~~i~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..|+..+.+ + .|.+++.. +.....+..+.+.+...+|||
T Consensus 404 ---------G~~I~~~~~~~g~~~l~~~~~~-------G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 404 ---------GTMVIYSTTYQGKQVLAAVSID-------GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---------CCEEEEEEecCCceEEEEEECC-------CCceEECcCCCCCcCCCccCC
Confidence 5655544433 3 46677764 555666666777788888886
No 238
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=4.4e-11 Score=105.64 Aligned_cols=243 Identities=17% Similarity=0.259 Sum_probs=163.9
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD 127 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~ 127 (407)
+++.+.|+.+|+-. .. ...-......+..|.++|+.++.-|....-|.|++.|+.+.-.|+........+.....
T Consensus 202 i~~~s~dgqvr~s~---i~--~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSE---IL--ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred ceeccccCceeeee---ec--cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 55666666665541 11 11112224455579999999999998899999999999999999987654443332111
Q ss_pred CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce------eeEee------ccc
Q 046899 128 SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR------GKYLG------HED 195 (407)
Q Consensus 128 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~------~~~~~------~~~ 195 (407)
.. ...|.++++.-. -.....+++++.+...+++|....... ..+.. ..-
T Consensus 277 ~~---~~~v~L~~Ia~~----------------P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v 337 (559)
T KOG1334|consen 277 DE---KERVGLYTIAVD----------------PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV 337 (559)
T ss_pred CC---ccceeeeeEecC----------------CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence 00 112445443311 111235677888888999887543322 22221 234
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC----------Ccee-eecccCc--ceEEEEe-cCCCCCEEEEEeCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST----------PAVK-VEKAHNA--DIHCVDW-NPHDVNLILTGSAD 261 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~-~~~~~~~--~v~~l~~-~~~~~~~l~tg~~d 261 (407)
.|+|++|+.++..+|+ +-.|-.|.+|.-..+.- +... .+++|.. .|.++-| .| ...++++|+.=
T Consensus 338 ~ITgl~Ysh~~sElLa-SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDC 415 (559)
T KOG1334|consen 338 NITGLVYSHDGSELLA-SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDC 415 (559)
T ss_pred cceeEEecCCccceee-eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCcc
Confidence 7899999977745554 45678899995433221 1122 2567743 4666665 67 78999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 262 NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 262 g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
|.|.||+-.+ ++.+.-+.+-..-|+||.=||.-+ +|||++-|..|+||-....+.
T Consensus 416 GhIFiW~K~t------~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 416 GHIFIWDKKT------GEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred ceEEEEecch------hHHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence 9999999998 899999988777999999999999 679999999999998754433
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5e-11 Score=111.67 Aligned_cols=175 Identities=17% Similarity=0.202 Sum_probs=112.3
Q ss_pred CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
.+.++|.. +.....+..+...+.+.+|+|+| +.|+..+. ...|.+||+.+++. ..+....+.+.+..|+| +
T Consensus 177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~---~~l~~~~g~~~~~~~SP-D 250 (427)
T PRK02889 177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRR---RVVANFKGSNSAPAWSP-D 250 (427)
T ss_pred EEEEECCC-CCCceEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCE---EEeecCCCCccceEECC-C
Confidence 45556653 33334455677889999999999 66666553 24599999988772 22333445567899999 7
Q ss_pred CCEEE-EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC--CCCcccccc
Q 046899 252 VNLIL-TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE--KIGEKQDYG 328 (407)
Q Consensus 252 ~~~l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~--~~~~~~~~~ 328 (407)
++.|+ +.+.+|...+|.+... ......+..+...+....|+|||++|+.++..++...+|.+. .+. ...+.
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt 324 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNAD-----GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVT 324 (427)
T ss_pred CCEEEEEEccCCCceEEEEECC-----CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEe
Confidence 87765 5677887677665431 233555655666667889999999876555445666677553 332 22222
Q ss_pred cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecc
Q 046899 329 ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMI 379 (407)
Q Consensus 329 ~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~ 379 (407)
........+.|||| +..|+..+.++ .|.+||+.
T Consensus 325 ~~g~~~~~~~~SpD------------------G~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 325 FTGSYNTSPRISPD------------------GKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred cCCCCcCceEECCC------------------CCEEEEEEccCCcEEEEEEECC
Confidence 12222345678887 77777655543 79999987
No 240
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=4.8e-11 Score=120.18 Aligned_cols=199 Identities=15% Similarity=0.301 Sum_probs=145.3
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
|-..|.++.-+| ...+.+||+.||.|++|....+..+ ..|+.....+ +.-..+.
T Consensus 2207 ~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v-----------------~~~rt~g~s~--------vtr~~f~ 2260 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQV-----------------VCFRTAGNSR--------VTRSRFN 2260 (2439)
T ss_pred ccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeE-----------------EEeeccCcch--------hhhhhhc
Confidence 446788888778 4557789999999999998876433 3333322210 0111122
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe---CCCcEEEEEcCCCCCCceeeeccc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG---DDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
.....+..+..||.+.+|.+. .++....+.|......+.|-. ..+++++ .++.+.+||........... ..|
T Consensus 2261 ~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H 2335 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCH 2335 (2439)
T ss_pred ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eec
Confidence 222345667778888888876 566777788999899999876 3466654 47889999986544222333 789
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
.+.++++++-| ...+|++|+.+|.|++||++. .+.+++++. ++ ... .|++|+..|.|+||++
T Consensus 2336 ~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq------rql~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2336 DGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA---------LD-TRE-YFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred CCCceEEEEcC-cceEEEecCCcCcEEEeehHH------HHHHHHhhh---------hh-hhh-eeeccCcccceEEEEc
Confidence 99999999999 889999999999999999998 777777765 44 333 4679999999999999
Q ss_pred CCCCccccccc
Q 046899 319 EKIGEKQDYGE 329 (407)
Q Consensus 319 ~~~~~~~~~~~ 329 (407)
.....+.+++.
T Consensus 2398 s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2398 SEFGLLHTFPS 2408 (2439)
T ss_pred cccchhhcCch
Confidence 99888877764
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=105.78 Aligned_cols=166 Identities=11% Similarity=0.123 Sum_probs=131.9
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEeec---ccCEEEEEEC------C-------------CCCcEEEEEeCCCcEEEEE
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLGH---EDTVEDVQFC------P-------------SSAQEFCSVGDDSCLILWD 223 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~------~-------------~~~~~l~s~~~dg~i~iwd 223 (407)
+++....+|.+++|+...++..+.+... ++...+.+|. | .+...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 3566677788888887777766665431 2333444442 2 1225788899999999999
Q ss_pred cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCE
Q 046899 224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV 303 (407)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 303 (407)
+..++-.....-..|.+.|+++.++. +-..|.+++.|+.+..|+... ...++.+++....+.+++.+|||..
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~------~~~~~~~~~~~~~~~sl~is~D~~~- 158 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE------KVIIRIWKEQKPLVSSLCISPDGKI- 158 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc------ceeeeeeccCCCccceEEEcCCCCE-
Confidence 99988322233357999999999988 788999999999999999998 8899999998999999999999984
Q ss_pred EEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899 304 FGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSS 341 (407)
Q Consensus 304 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 341 (407)
+++++ ++|++||+++.+.+..|.+|.++|..++|-.
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT 194 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence 45775 7999999999999999999999999999843
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.27 E-value=4.6e-10 Score=102.13 Aligned_cols=275 Identities=10% Similarity=0.091 Sum_probs=158.6
Q ss_pred ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceE-EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCC
Q 046899 50 QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVN-RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS 128 (407)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~ 128 (407)
+...++.+.++ +....+....+...+.+. .+.|+| +++++.+++.||.|.++|+.+.+.+.++......
T Consensus 11 ~~~~~~~v~vi---------D~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~ 80 (369)
T PF02239_consen 11 VERGSGSVAVI---------DGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP 80 (369)
T ss_dssp EEGGGTEEEEE---------ETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE
T ss_pred EecCCCEEEEE---------ECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc
Confidence 34455667776 223344555555545554 456677 8888989999999999999998866655432211
Q ss_pred CCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-------ccCEEEEE
Q 046899 129 HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-------EDTVEDVQ 201 (407)
Q Consensus 129 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------~~~v~~l~ 201 (407)
.++.+.++|+. .+++....+.+.++|..+.+.++.+... ...+..|.
T Consensus 81 ------------------------~~i~~s~DG~~--~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv 134 (369)
T PF02239_consen 81 ------------------------RGIAVSPDGKY--VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV 134 (369)
T ss_dssp ------------------------EEEEE--TTTE--EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE
T ss_pred ------------------------ceEEEcCCCCE--EEEEecCCCceeEeccccccceeecccccccccccCCCceeEE
Confidence 11111222221 1233446778888999999888877542 34678888
Q ss_pred ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCCC------
Q 046899 202 FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLTS------ 274 (407)
Q Consensus 202 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~------ 274 (407)
.+|.++.++++--+.+.|.+-|...... ................|+| ++++++++ ..+..|-++|.++...
T Consensus 135 ~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 135 ASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp E-SSSSEEEEEETTTTEEEEEETTTSSC-EEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ecCCCCEEEEEEccCCeEEEEEeccccc-cceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeec
Confidence 8888844444555558888889877653 2333334455677889999 88877654 4566777887655320
Q ss_pred -------------------------------------------CCCCCceeeecCCCCCEEEEEEcCCCCCEEEE---ee
Q 046899 275 -------------------------------------------DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS---SA 308 (407)
Q Consensus 275 -------------------------------------------~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s---~~ 308 (407)
...++.+.++.....+ ..++-||+++++.+. +.
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~ 291 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP 291 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCC
Confidence 0013445555554445 777889999999866 46
Q ss_pred CCCeEEEEeCCCCCccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 309 EDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 309 ~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
..++|.++|.++.+....+.. ....+.++.|++| |..-++..+..++.|.|||-.
T Consensus 292 ~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d----------------G~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 292 DADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD----------------GKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp SHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT----------------SSEEEEEEE--TTEEEEEETT
T ss_pred CCceEEEEECcCcceeEEEeccCCCcEeccEECCC----------------CCEEEEEEecCCCEEEEEECC
Confidence 678999999999877766653 3335778888888 223355566666689999987
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2e-10 Score=108.15 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=116.7
Q ss_pred CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
.+.++|.... ..+.+..+...+.+.+|+|+| +.|+..+. +..|.+||+.+++ ...+..+.+.+.+.+|+| +
T Consensus 183 ~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~---~~~l~~~~g~~~~~~~SP-D 256 (435)
T PRK05137 183 RLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQ---RELVGNFPGMTFAPRFSP-D 256 (435)
T ss_pred EEEEECCCCC-CcEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCc---EEEeecCCCcccCcEECC-C
Confidence 5666776443 445566788899999999999 56665543 4689999998876 233445566778899999 7
Q ss_pred CCEEE-EEeCCCc--EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccc
Q 046899 252 VNLIL-TGSADNS--IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQD 326 (407)
Q Consensus 252 ~~~l~-tg~~dg~--i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~ 326 (407)
++.|+ +.+.++. |.+||+.. + .+..+..+........|+|||++|+.+...++ .|.++|+...+ .+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~------~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~ 328 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRS------G-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRR 328 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCC------C-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEE
Confidence 77664 5565665 77778876 3 34556666666778999999998754443333 68888877643 333
Q ss_pred cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe---eeEEEeecc
Q 046899 327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV---KVLEIWRMI 379 (407)
Q Consensus 327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~i~iwd~~ 379 (407)
+......+..+.|||| +..|+..+.+ ..|.+||+.
T Consensus 329 lt~~~~~~~~~~~Spd------------------G~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 329 ISFGGGRYSTPVWSPR------------------GDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred eecCCCcccCeEECCC------------------CCEEEEEEcCCCceEEEEEECC
Confidence 3333444556778888 6666654433 367788874
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2e-10 Score=107.93 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=114.5
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~ 250 (407)
..+.+||..... .+.+..+...+.+.+|+|++ +.|+.++. +..|.+||+.+++. ..+....+...+..|+|
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~---~~l~~~~g~~~~~~~Sp- 257 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQR---ELVASFRGINGAPSFSP- 257 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCE---EEeccCCCCccCceECC-
Confidence 357778875443 44555677789999999999 66666653 34699999987762 22333444556789999
Q ss_pred CCCEEE-EEeCCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCCCCccc
Q 046899 251 DVNLIL-TGSADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEKIGEKQ 325 (407)
Q Consensus 251 ~~~~l~-tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~ 325 (407)
+++.++ +.+.+| .|++||+.+ ++ +..+..+.......+|+|+|++|+.++..++. |.++|+..++. +
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~------g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~ 329 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGS------RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-E 329 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCC------CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-E
Confidence 777664 555555 599999986 43 45565565566788999999987655444554 66667766443 2
Q ss_pred ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecc
Q 046899 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMI 379 (407)
Q Consensus 326 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~ 379 (407)
.+.........++|||| +..|+..+.++ .|.+||+.
T Consensus 330 ~lt~~g~~~~~~~~SpD------------------G~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 330 RLTFQGNYNARASVSPD------------------GKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred EeecCCCCccCEEECCC------------------CCEEEEEECCCCceeEEEEECC
Confidence 22222233446788888 66666544332 79999986
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=3.8e-11 Score=120.87 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=159.8
Q ss_pred CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEE
Q 046899 133 DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFC 211 (407)
Q Consensus 133 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~ 211 (407)
++...-|..+.....+......+..+.........++|+.||.+++|....++.+..++. ....|+.+.|+-+| +.+.
T Consensus 2189 ~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~ 2267 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFG 2267 (2439)
T ss_pred CccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-Ccee
Confidence 455555555555555555555556666666777889999999999999888888777652 34789999999999 7899
Q ss_pred EEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe---CCCcEEEEeCCCCCCCCCCCceeeecCCC
Q 046899 212 SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMFDRRKLTSDGVGSPIHKFEGHS 288 (407)
Q Consensus 212 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vwd~~~~~~~~~~~~~~~~~~h~ 288 (407)
.+-.||.+.+|.+. .+ .....+.|......+.|-. ..+++++ .++.+.+||...+.. ...+. ..|.
T Consensus 2268 i~d~dg~l~l~q~~-pk--~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~---~s~v~--~~H~ 2336 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQAS-PK--PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM---NSLVH--TCHD 2336 (2439)
T ss_pred eeccCCceeecccC-Cc--ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc---cceee--eecC
Confidence 99999999999987 33 5777788988888888853 5566654 467999999876431 22333 7899
Q ss_pred CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE
Q 046899 289 AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT 368 (407)
Q Consensus 289 ~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 368 (407)
+.++++++.|... +|.|||.+|.|++||++..+.+..+..-+ -..++++|+
T Consensus 2337 ~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrql~h~~~~~~----------------------------~~~~f~~~s 2387 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQLRHTFQALD----------------------------TREYFVTGS 2387 (2439)
T ss_pred CCceEEEEcCcce-EEEecCCcCcEEEeehHHHHHHHHhhhhh----------------------------hhheeeccC
Confidence 9999999999988 55699999999999999987777765411 166788999
Q ss_pred EeeeEEEeeccc
Q 046899 369 MVKVLEIWRMID 380 (407)
Q Consensus 369 ~d~~i~iwd~~~ 380 (407)
.-|.|+||+++.
T Consensus 2388 s~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSE 2399 (2439)
T ss_pred cccceEEEEccc
Confidence 999999999984
No 246
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=4.2e-11 Score=110.82 Aligned_cols=284 Identities=18% Similarity=0.248 Sum_probs=174.0
Q ss_pred eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899 74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG 153 (407)
Q Consensus 74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~ 153 (407)
+-..-.+.-.+.++++..+| .|+-+|+++.-| +.+-|+...-.......|... |.+.. .....++.
T Consensus 15 f~kslsl~v~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp----------w~vad--~qws~h~a 80 (1081)
T KOG0309|consen 15 FGKSLSLKVDGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP----------WQVAD--VQWSPHPA 80 (1081)
T ss_pred cCceeEEEecCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCc----------chhcc--eecccCCC
Confidence 33334445678899999999 777788887754 556666543222222111111 11000 00000000
Q ss_pred CCcccccCCCCCccccccCCCCCCCCCCCC---cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 154 SAKSTASGGANSKNASKSGGNGDKPLESPS---IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
..+-+...+...-.+|++.. ......+.+|...|+.+.|+|+.+..+++++-|-.++.||+++...+
T Consensus 81 ----------~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 81 ----------KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred ----------CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence 01112223333444555432 22334566899999999999999999999999999999999998876
Q ss_pred ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
..... .-......+.|+-.+++.+|+ +....|.+||.+.. ..++..+++|...|+.++|...-...+.+++.|
T Consensus 151 ~ys~~-~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~g-----s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 151 FYSTS-SWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKG-----STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred eeeee-cccccCceeeecccCcchhhh-ccCCceEEEeccCC-----CcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 44444 334456789999866666655 55678999999984 578999999999999999986544345699999
Q ss_pred CeEEEEeCCCCCcc-cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccccc----CC
Q 046899 311 GILNIWDHEKIGEK-QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY----RP 385 (407)
Q Consensus 311 ~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~----~~ 385 (407)
++|+.||..+.... ........|++...|-|- |.+..+..-..+..+.+++....-. ..
T Consensus 224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf----------------g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~ 287 (1081)
T KOG0309|consen 224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF----------------GEGYCIMPMVGGNMVPQLRCENSDLEWNVFD 287 (1081)
T ss_pred CceeeecccccccccceeccccCcceecccccc----------------CceeEeccccCCeeeeeccccchhhhhcccc
Confidence 99999999865433 223334566666555442 2222222222222444443321100 11
Q ss_pred hHHHHHHHhhcccceeEee
Q 046899 386 EEEVLAELDKFKSHIFGCD 404 (407)
Q Consensus 386 ~~~~~~~~~~h~~~v~~~~ 404 (407)
..+++..+.||.+.|...-
T Consensus 288 ~~~pVh~F~GH~D~V~eFl 306 (1081)
T KOG0309|consen 288 LNTPVHTFVGHDDVVLEFL 306 (1081)
T ss_pred CCcceeeecCcchHHHHHh
Confidence 3467888999988876543
No 247
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.21 E-value=4.6e-09 Score=86.32 Aligned_cols=211 Identities=11% Similarity=0.049 Sum_probs=131.6
Q ss_pred EEEEEeC----CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899 87 NRIRELP----QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG 162 (407)
Q Consensus 87 ~~l~~~~----~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 162 (407)
..|.|.| ....+||.|+.-|...+|...+.+....+ -|......++... ...
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~----------------cd~snn~v~~~~r--------~cd 126 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ----------------CDVSNNDVTLVKR--------YCD 126 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceee----------------ecccccchhhhhh--------hcc
Confidence 4455555 13458999999999999999876432211 1111100000000 000
Q ss_pred CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-eecccCcc
Q 046899 163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-VEKAHNAD 241 (407)
Q Consensus 163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 241 (407)
....+..++.|.++++.++..+..........-.++++++++++ .++++.+....|-.|.+......... ........
T Consensus 127 ~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 127 LKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred cccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 01123334455555555443332222221111237899999998 89999999999999999765532333 22233444
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee----eecCCCCCEEEEEEcCCCCC-EEEEeeCCCeEEEE
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH----KFEGHSAAVLCVQWSPDKSS-VFGSSAEDGILNIW 316 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~----~~~~h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vw 316 (407)
-.+..|+. ....+|++..||++.|||+|.+. .+.. +-..|.+.++.+.|++.|.. ||.-.-.-+.+.+-
T Consensus 206 gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~-----tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 206 GFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMA-----TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred ceeeeecc-CcceEEEEecCCcEEEEEecccc-----cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 56889988 77899999999999999999853 3333 23358999999999986642 23344556889999
Q ss_pred eCCCCCcccccc
Q 046899 317 DHEKIGEKQDYG 328 (407)
Q Consensus 317 d~~~~~~~~~~~ 328 (407)
|++++...+.+.
T Consensus 280 D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 280 DTRNYVNHQVIV 291 (344)
T ss_pred EcccCceeeEEe
Confidence 999987766543
No 248
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=8.1e-09 Score=96.76 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=85.5
Q ss_pred CEEEEEECCCCCcEEEEEeC-CCcEEEE--EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---CcEEEEeC
Q 046899 196 TVEDVQFCPSSAQEFCSVGD-DSCLILW--DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---NSIHMFDR 269 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~ 269 (407)
.+....|+|+| +.|+.++. ++...+| |+.++. ...+...........|+| +++.++..+.+ ..|.+||+
T Consensus 288 ~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 288 NNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEEC
Confidence 45678999999 55555544 4555555 665554 223333444556789999 88888765543 35888998
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe---EEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI---LNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~---i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.+ ++ ...+... .......|+|||++|+ .++.++. +.++++. ++..+.+..+.+.+..++|||-
T Consensus 363 ~~------g~-~~~Lt~~-~~~~~p~~SpDG~~i~-~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 363 AT------GG-VQVLTDT-FLDETPSIAPNGTMVI-YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CC------CC-eEEeCCC-CCCCCceECCCCCEEE-EEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence 76 43 3334321 2345678999999875 5555543 6777774 4556677777788888999873
No 249
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=2.1e-10 Score=96.63 Aligned_cols=264 Identities=14% Similarity=0.204 Sum_probs=152.0
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCC------CCCC---------CCcEEEEecccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS------HPDL---------DQSVVLWSIQDHVS 146 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~---------d~~i~~w~~~~~~~ 146 (407)
.-+.|.-+.|..+...+|.....|+.|.+|++...+-...+...... .|+. +-.|.+|.+.+...
T Consensus 47 cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 47 CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 34677888888856666667788999999999877655444433222 2222 77889999988755
Q ss_pred ccccCCC----CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899 147 ALAAEPG----SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW 222 (407)
Q Consensus 147 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 222 (407)
....++. +..+.++|.+...+.-..-...+.|.....-..+..+.-.+-..+.|.|+|+| +.++ +|
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vw 196 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VW 196 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cEEE---------Ee
Confidence 4333332 33455555543222222111222222222223344444455667889999988 5554 45
Q ss_pred EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC----------------------------
Q 046899 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS---------------------------- 274 (407)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~---------------------------- 274 (407)
|---.- .+. ...-+-.+..++|+| .+++++.|+.|+.+|+.+--+.+.
T Consensus 197 d~~Ley--kv~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql 272 (447)
T KOG4497|consen 197 DNVLEY--KVY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQL 272 (447)
T ss_pred cchhhh--eee-eeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhh
Confidence 532111 011 112235678899999 889999999999988865211110
Q ss_pred -------------CCC-------------------CCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCC
Q 046899 275 -------------DGV-------------------GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEK 320 (407)
Q Consensus 275 -------------~~~-------------------~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~ 320 (407)
.+. .++...+....-.+--++|++|..++ ||-.+ -+.+-+||+++
T Consensus 273 ~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~-aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 273 LHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYA-ATRNDKYPNALWLWDLQN 351 (447)
T ss_pred cccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEE-eeecCCCCceEEEEechh
Confidence 000 01111111223467889999999865 56542 26789999998
Q ss_pred CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 321 IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 321 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+. ...-....||....|.|. ...++.....+.+++|-..
T Consensus 352 l~l-~avLiQk~piraf~WdP~------------------~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 352 LKL-HAVLIQKHPIRAFEWDPG------------------RPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred hhh-hhhhhhccceeEEEeCCC------------------CceEEEEcCCceEEEEcCC
Confidence 544 444445667766666664 3444444444567777664
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=3.8e-10 Score=95.69 Aligned_cols=269 Identities=15% Similarity=0.197 Sum_probs=156.9
Q ss_pred eecccccCccceEEEEeecccCc---------ccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEEEeCc
Q 046899 45 GPQLEQATYKNRQRLYLSEQFNE---------EARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~ 114 (407)
+..+++|+-+|++.++--++... ....|.+.-.+.+.-...|+.++|.++ +...++..+.|.+|++|.+.
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~ 116 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR 116 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence 34689999999887773221100 000122222233345578999999974 44567777889999999987
Q ss_pred CCCCcccc-cCcCCCCCCCCCcEEEEeccccccccccCC---------CCCcccccCCCCCccccccCCCCCCCCCCCCc
Q 046899 115 AQPNRHAV-LGAADSHPDLDQSVVLWSIQDHVSALAAEP---------GSAKSTASGGANSKNASKSGGNGDKPLESPSI 184 (407)
Q Consensus 115 ~~~~~~~~-~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 184 (407)
.......- .......+..-.++++--+......+...+ ..+..+..... ......+.|=.|.+|++..-
T Consensus 117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-~Et~lSADdLRINLWnlei~ 195 (433)
T KOG1354|consen 117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-KETFLSADDLRINLWNLEII 195 (433)
T ss_pred ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-cceEeeccceeeeecccccc
Confidence 65433210 000000000011222221111111111111 11111111111 22333556667888887543
Q ss_pred Cce---eeEee-----cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC----Ccee----------eecccCcce
Q 046899 185 GAR---GKYLG-----HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST----PAVK----------VEKAHNADI 242 (407)
Q Consensus 185 ~~~---~~~~~-----~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~----------~~~~~~~~v 242 (407)
..- ...+. -+.-|++..|+|...+.|+-.+..|+|++-|+|.... .... .+.+--..|
T Consensus 196 d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 196 DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence 221 11222 2457889999999888999999999999999995421 0011 111223467
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC------------C---EEEEEEcCCCCCEEEEe
Q 046899 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA------------A---VLCVQWSPDKSSVFGSS 307 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~------------~---v~~v~~~~~~~~ll~s~ 307 (407)
..+.|++ +|+++++-+. -+|++||+... .+++.+++-|.. . -..++|+.++.++ +||
T Consensus 276 SDvKFs~-sGryilsRDy-ltvk~wD~nme-----~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v-~TG 347 (433)
T KOG1354|consen 276 SDVKFSH-SGRYILSRDY-LTVKLWDLNME-----AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV-MTG 347 (433)
T ss_pred hceEEcc-CCcEEEEecc-ceeEEEecccc-----CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE-ecc
Confidence 8899999 9999998653 58999999653 577877776632 2 3456889888877 499
Q ss_pred eCCCeEEEEeCCCCC
Q 046899 308 AEDGILNIWDHEKIG 322 (407)
Q Consensus 308 ~~d~~i~vwd~~~~~ 322 (407)
+..+.++++++..+.
T Consensus 348 sy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 348 SYNNVFRVFNLARGS 362 (433)
T ss_pred cccceEEEecCCCCc
Confidence 999999999976543
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.4e-08 Score=90.11 Aligned_cols=306 Identities=16% Similarity=0.219 Sum_probs=171.9
Q ss_pred cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC-------
Q 046899 35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD------- 104 (407)
Q Consensus 35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~------- 104 (407)
..|...-++|.|. +.|-.--| +.+| ..+.....+...|.+ |.-+.|+| +.++|+|=+.
T Consensus 209 enWTetyv~wSP~GTYL~t~Hk~G-I~lW---------GG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 209 ENWTETYVRWSPKGTYLVTFHKQG-IALW---------GGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEE 276 (698)
T ss_pred hcceeeeEEecCCceEEEEEeccc-eeee---------cCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCc
Confidence 4566667888874 44544444 6688 333344555566875 88999999 8899998764
Q ss_pred ----CCcEEEEeCcCCCCcccccCcCCCCCCC----------------CCcEEEEeccccccccc---cCCCCCcccccC
Q 046899 105 ----SPDVLIWDVEAQPNRHAVLGAADSHPDL----------------DQSVVLWSIQDHVSALA---AEPGSAKSTASG 161 (407)
Q Consensus 105 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~----------------d~~i~~w~~~~~~~~~~---~~~~~~~~~~~~ 161 (407)
...++|||+.++.....+.........- ..+|.+++...-. .+. ....++.-....
T Consensus 277 ~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~-lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 277 DDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFM-LLDKKSLKISGIRDFSWS 355 (698)
T ss_pred ccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCcee-eecccccCCccccCcccC
Confidence 2569999999998777665522111100 3344555433210 000 000111100011
Q ss_pred CCCCcccccc-----CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE----------eCCCcEEEEEcCC
Q 046899 162 GANSKNASKS-----GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV----------GDDSCLILWDARS 226 (407)
Q Consensus 162 ~~~~~~~~~~-----~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~----------~~dg~i~iwd~~~ 226 (407)
+....++.-. .-..+.+..+++++.+++-.-+.-.=..+.|-.+| .+|+.- +.-..+.|+.++.
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeec
Confidence 1111122111 11123344555555555443333222345566666 555542 2223477888887
Q ss_pred CCCCceeeecccCcceEEEEecCCCCCEEEEEe-C--CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCE
Q 046899 227 GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-A--DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV 303 (407)
Q Consensus 227 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~--dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 303 (407)
..-| .........|...+|.| .|+.+++-+ . ..++.+|-+++.. .....+..+.. ...+.+.|+|.|+++
T Consensus 435 KdIp--ve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk--~~~N~vfwsPkG~fv 507 (698)
T KOG2314|consen 435 KDIP--VEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELDK--KFANTVFWSPKGRFV 507 (698)
T ss_pred cCCC--ceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhcc--cccceEEEcCCCcEE
Confidence 7743 22235678899999999 666555433 2 3578899888411 11445555553 567899999999987
Q ss_pred EEEe--eCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee------eEEE
Q 046899 304 FGSS--AEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK------VLEI 375 (407)
Q Consensus 304 l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~------~i~i 375 (407)
++.+ |..|.+.++|+.-......-.......+.+.|.|. |.++++++.-. .-+|
T Consensus 508 vva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPt------------------GRYvvT~ss~wrhk~d~GYri 569 (698)
T KOG2314|consen 508 VVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPT------------------GRYVVTSSSSWRHKVDNGYRI 569 (698)
T ss_pred EEEEecccccceEEEecchhhhhhccCccccccccceECCC------------------CCEEEEeeehhhhccccceEE
Confidence 5433 45789999998852222222222333455666665 77888776643 6788
Q ss_pred eecc
Q 046899 376 WRMI 379 (407)
Q Consensus 376 wd~~ 379 (407)
|++.
T Consensus 570 ~tfq 573 (698)
T KOG2314|consen 570 FTFQ 573 (698)
T ss_pred EEee
Confidence 8886
No 252
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.13 E-value=1.1e-09 Score=89.50 Aligned_cols=150 Identities=21% Similarity=0.300 Sum_probs=102.9
Q ss_pred CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEE
Q 046899 217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQW 296 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 296 (407)
+..+.|+++..+. ..........|.+++-+|...+++++|+.||.+-+||.|+. ..+...++.|+.+++.+-|
T Consensus 159 d~~~a~~~~p~~t--~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~eV~F 231 (319)
T KOG4714|consen 159 DNFYANTLDPIKT--LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIWEVHF 231 (319)
T ss_pred cceeeeccccccc--ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhhheec
Confidence 4566777765442 11111223349999999977888999999999999999985 3677788899999999999
Q ss_pred cCCC-CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc-------chhccccceeeeeEeeCccceeeeEE
Q 046899 297 SPDK-SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD-------MLDIETKLLTSIGMHLIHGRLLVCLT 368 (407)
Q Consensus 297 ~~~~-~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d-------~~~~~~~~~~~~~~~~~~~~~i~~~~ 368 (407)
||.. .+|| +++.||.+-.||..+ ..+. ..... .+-..-.|.| +..+......++-.+.-|+..+++|+
T Consensus 232 Hpk~p~~Lf-t~sedGslw~wdas~-~~l~-i~~~~-s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgt 307 (319)
T KOG4714|consen 232 HPKNPEHLF-TCSEDGSLWHWDAST-TFLS-ISNQA-SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGT 307 (319)
T ss_pred cCCCchhee-EecCCCcEEEEcCCC-ceEE-ecCcc-ccccccccCCcccceEeeeccccccceeeeeeeccCceEEecc
Confidence 9965 4565 999999999999874 2221 11111 1111111111 23333444556677888899999999
Q ss_pred EeeeEEEee
Q 046899 369 MVKVLEIWR 377 (407)
Q Consensus 369 ~d~~i~iwd 377 (407)
..+.|++++
T Consensus 308 d~eaIyl~~ 316 (319)
T KOG4714|consen 308 DAEAIYLTR 316 (319)
T ss_pred ccceEEEec
Confidence 999998875
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.3e-08 Score=90.39 Aligned_cols=112 Identities=18% Similarity=0.379 Sum_probs=86.9
Q ss_pred cCcceEEEEecCCCCCEEEE--EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeE
Q 046899 238 HNADIHCVDWNPHDVNLILT--GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGIL 313 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~t--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i 313 (407)
-.++|.++.|+| +++.|++ |-.=..+.|||++ +.++..+. .++=+++-|+|.|++|+.+|-. -|.|
T Consensus 269 k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr-------~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 269 KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR-------GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred CCCCceEEEECC-CCCEEEEEEecccceEEEEcCC-------CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCce
Confidence 367999999999 7776655 3445689999999 58888885 5778899999999977655433 4889
Q ss_pred EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE------eeeEEEeecc
Q 046899 314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM------VKVLEIWRMI 379 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~------d~~i~iwd~~ 379 (407)
-|||+.+.+++..+...... -..|+|| +.++++++. |..++||++.
T Consensus 339 EvwDv~n~K~i~~~~a~~tt--~~eW~Pd------------------Ge~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANTT--VFEWSPD------------------GEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEEeccchhhccccccCCce--EEEEcCC------------------CcEEEEEeccccEEecCCeEEEEec
Confidence 99999998888888765542 3567777 888886655 5689999995
No 254
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.09 E-value=8.4e-11 Score=79.70 Aligned_cols=51 Identities=39% Similarity=0.726 Sum_probs=38.4
Q ss_pred hhhhhhhhccCceEEEeeeecccCCCeeEEEEeecccccCc---cceEEEEeec
Q 046899 13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATY---KNRQRLYLSE 63 (407)
Q Consensus 13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~~~~~~~---~~~~~i~~~~ 63 (407)
+|++++||+|.|++|++++.+.++||+++|+|+|+...+.. -..+++.+|+
T Consensus 1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT 54 (74)
T PF12265_consen 1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGT 54 (74)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE-
T ss_pred CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEE
Confidence 58999999999999999999999999999999998763222 3477888777
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.08 E-value=4.6e-09 Score=89.28 Aligned_cols=248 Identities=17% Similarity=0.217 Sum_probs=154.1
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc-CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE-AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
.+..||.+.|+.....| ..+-+.+.+.|.++|||--. .++.-..+. |..+.+ -+..-+..+..
T Consensus 18 ~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~---~~~~~y~~e~~----------- 81 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSP---CSAMEYVSESR----------- 81 (404)
T ss_pred hhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhh-hhCCCC---ceEeeeeccce-----------
Confidence 34458999999988888 45568899999999999543 332222111 111111 11111111111
Q ss_pred cccccCCCCCccccccCCCCCCC----CCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899 156 KSTASGGANSKNASKSGGNGDKP----LESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA 231 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i----~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 231 (407)
.+..+-..|++.- -|.++....+.+..|...|..+-|+-.. ..+++.+.|..+.---.+.+...-
T Consensus 82 ----------~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg 150 (404)
T KOG1409|consen 82 ----------RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG 150 (404)
T ss_pred ----------EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc
Confidence 1111111111111 1335556667777899999999998776 788888888776544444443110
Q ss_pred eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
-..+ .....++.+.- .+...|...|.|.+-.+.... ..++.++.+|.+.+++++|.|....| .+|..|.
T Consensus 151 ~Y~~---~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~----~~~i~~~~~h~~~~~~l~Wd~~~~~L-fSg~~d~ 219 (404)
T KOG1409|consen 151 GYNF---ETPASALQFDA---LYAFVGDHSGQITMLKLEQNG----CQLITTFNGHTGEVTCLKWDPGQRLL-FSGASDH 219 (404)
T ss_pred ceEe---eccCCCCceee---EEEEecccccceEEEEEeecC----CceEEEEcCcccceEEEEEcCCCcEE-EeccccC
Confidence 0111 11112233322 256677777777666554422 67899999999999999999988855 5999999
Q ss_pred eEEEEeCCCCCcc-cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 312 ILNIWDHEKIGEK-QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 312 ~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
.+.+||+.-.+-. ....+|...|..+.. -.|...+.+...||.|.+|+.+-
T Consensus 220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~------------------~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYELQGHNDKVQALSY------------------AQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ceEEEeccCCcceeeeeccchhhhhhhhh------------------hhhheeeeeccCCCeEEEEeccc
Confidence 9999999865443 344566666666555 23477888999999999999863
No 256
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.08 E-value=1e-09 Score=92.60 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=117.4
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC-CEEEEEeCCCcEEEEeCCCCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV-NLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~ 273 (407)
+.|.-|.|..+...++.....|+.|.+|++.+.+ -.-.+..-...+.+++|+| +| .+|.+..-|-+|.+|.+.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t-- 123 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNT-- 123 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEecc--
Confidence 3466678887776677788889999999999887 4556667788899999999 77 4556677788999999998
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe---EEEEeCCCCCcccccccCCCcccCCCCcCc-----chh
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI---LNIWDHEKIGEKQDYGELKYPIIHPAYSSD-----MLD 345 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~---i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~ 345 (407)
+...-++.-+..+..++|+|+|++. |.++.-.. +.+..-.....+..+.-.....+++.|||| +|+
T Consensus 124 -----~~~~~~~~pK~~~kg~~f~~dg~f~-ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 124 -----QKGYLLPHPKTNVKGYAFHPDGQFC-AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred -----ceeEEecccccCceeEEECCCCcee-eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence 3444444445567899999999965 44443211 222222223334455555667788999998 233
Q ss_pred cccc---------ceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899 346 IETK---------LLTSIGMHLIHGRLLVCLTMVKVLEIWR 377 (407)
Q Consensus 346 ~~~~---------~~~~~~~~~~~~~~i~~~~~d~~i~iwd 377 (407)
..-. .-......++.+..|+.|+.|+.+||-+
T Consensus 198 ~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 198 NVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred chhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 3211 1112234556688899999999888754
No 257
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=3.5e-09 Score=91.81 Aligned_cols=105 Identities=22% Similarity=0.238 Sum_probs=83.5
Q ss_pred EEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCC
Q 046899 212 SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAA 290 (407)
Q Consensus 212 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~ 290 (407)
..+....+.+|....+. .....+|-+.++.++|+| |+++++++..|..|++-.... ...+..|- +|+.-
T Consensus 127 kagD~~~~di~s~~~~~---~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa------~f~IesfclGH~eF 196 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGR---CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA------TFVIESFCLGHKEF 196 (390)
T ss_pred ecCCceeeeeecccccC---cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCc------ccchhhhccccHhh
Confidence 34445556666655533 445569999999999999 889999999999999987766 44555554 59999
Q ss_pred EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
|..++.-++.. | +|+|.|+++++||+.+++++.+++
T Consensus 197 VS~isl~~~~~-L-lS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 197 VSTISLTDNYL-L-LSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeeeeccCce-e-eecCCCCcEEEEecccCCcccccc
Confidence 99999987765 4 599999999999999999987665
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.4e-08 Score=93.35 Aligned_cols=181 Identities=12% Similarity=0.058 Sum_probs=101.8
Q ss_pred EEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCC-CceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDS----CLILWDARSGST-PAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRR 270 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~ 270 (407)
....+|+|+|..++++...+| .+.+|++..+.. ................+|+| |++.|+..+ .+|...+|.+.
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEE
Confidence 345799999944444433223 345577765321 11222222223446789999 888776554 46765566443
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccc
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIET 348 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~ 348 (407)
.... +.....+..+...+....|+|||++|+.++..+ ..|.+||+.+++.. .+......+..+.|+||
T Consensus 312 ~~~~---g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpD------ 381 (428)
T PRK01029 312 IDPE---GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAID------ 381 (428)
T ss_pred Cccc---ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCC------
Confidence 2100 223444544555678899999999875454433 47999999886543 33333344566788887
Q ss_pred cceeeeeEeeCccceeeeEEE---eeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 349 KLLTSIGMHLIHGRLLVCLTM---VKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..|+.... ...|.++|+. .++. ..+....+.+...+||+
T Consensus 382 ------------G~~L~f~~~~~g~~~L~~vdl~------~g~~-~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 382 ------------SLHLVYSAGNSNESELYLISLI------TKKT-RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred ------------CCEEEEEECCCCCceEEEEECC------CCCE-EEeecCCCcccCceecC
Confidence 555553222 2478888886 3322 22222334455666664
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=2.1e-08 Score=90.79 Aligned_cols=180 Identities=12% Similarity=0.209 Sum_probs=129.4
Q ss_pred CcEEEEecccccc--ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee------ccc-----CEEEE
Q 046899 134 QSVVLWSIQDHVS--ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG------HED-----TVEDV 200 (407)
Q Consensus 134 ~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~------~~~-----~v~~l 200 (407)
..|.-++++.+.. .+......+..+........+++|+.+|.+..||......+..+.. |.+ .|+++
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 3445555555533 2333334445555555666788899999999999887776665542 222 49999
Q ss_pred EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC-CCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 046899 201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD-VNLILTGSADNSIHMFDRRKLTSDGVGS 279 (407)
Q Consensus 201 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~tg~~dg~i~vwd~~~~~~~~~~~ 279 (407)
+|+.+| -.+++|+.+|.+.|||+++.++ ....-....-+|..+.|.+.+ ++.+++ .....++|||-.+ ++
T Consensus 235 ~F~d~g-L~~aVGts~G~v~iyDLRa~~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~------Gk 305 (703)
T KOG2321|consen 235 KFRDDG-LHVAVGTSTGSVLIYDLRASKP-LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECT------GK 305 (703)
T ss_pred EecCCc-eeEEeeccCCcEEEEEcccCCc-eeecccCCccceeeecccccCCCceEEe-cchHHhhhccccc------CC
Confidence 999988 7899999999999999999883 233333445688999997743 344444 4457899999999 88
Q ss_pred ceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 280 PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 280 ~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
+...+.. ...++.+++-|++..+ .++-.+..+..|=+......
T Consensus 306 ~~asiEp-t~~lND~C~~p~sGm~-f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 306 PMASIEP-TSDLNDFCFVPGSGMF-FTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred ceeeccc-cCCcCceeeecCCceE-EEecCCCcceeEEccccCCC
Confidence 8888875 4559999999998855 48888888888877765443
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.05 E-value=1.3e-08 Score=95.73 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=114.0
Q ss_pred CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---CcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
.+.++|..... ...+..+...+...+|+|++ +.|+.+..+ ..|++||+.++. ...+..+...+.+++|+| +
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~---~~~~~~~~~~~~~~~~sp-D 244 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQ---REKVASFPGMNGAPAFSP-D 244 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCC---EEEeecCCCCccceEECC-C
Confidence 45556654333 44555566778999999999 666665543 479999998876 223334555667799999 7
Q ss_pred CCEEE-EEeCCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccc
Q 046899 252 VNLIL-TGSADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQD 326 (407)
Q Consensus 252 ~~~l~-tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~ 326 (407)
++.|+ +.+.++ .|++||+.+ + ....+..+.......+|+|+|++|+.++..++ .|.++|+...+ ...
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~------~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~ 316 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDG------K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRR 316 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCC------C-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEE
Confidence 77665 445444 588888876 3 34445555555667899999998764544443 57788887644 333
Q ss_pred cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecc
Q 046899 327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMI 379 (407)
Q Consensus 327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~ 379 (407)
+.........+.|+|| +..|+..+.++ .|.+||+.
T Consensus 317 l~~~~~~~~~~~~spd------------------g~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 317 LTFRGGYNASPSWSPD------------------GDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred eecCCCCccCeEECCC------------------CCEEEEEEccCCceEEEEEeCC
Confidence 3334445566777777 66677666655 78888876
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=8.9e-10 Score=99.13 Aligned_cols=187 Identities=16% Similarity=0.307 Sum_probs=130.8
Q ss_pred CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899 71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAA 150 (407)
Q Consensus 71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~ 150 (407)
...+......||+..|..+.-.. +.+-+++++.|++|++|.+...-..
T Consensus 723 ~~~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~------------------------------- 770 (1034)
T KOG4190|consen 723 FDHIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDE------------------------------- 770 (1034)
T ss_pred cceeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCc-------------------------------
Confidence 33445556678999999998665 7788999999999999998753100
Q ss_pred CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
..+..+..++..|+.+|..+.|..+- +.+++ .||.|++||.--++..
T Consensus 771 ------------------------------~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 771 ------------------------------IGTSACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLL 817 (1034)
T ss_pred ------------------------------cccceeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccccchh
Confidence 12233567788999999999998876 56655 4899999998766621
Q ss_pred ceeeec---ccCcceEEEEecCCCCCEEEE-EeCCCcEEEEeCCCCCCCCCCCceeeec-----CCCCCEEEEEEcCCCC
Q 046899 231 AVKVEK---AHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGSPIHKFE-----GHSAAVLCVQWSPDKS 301 (407)
Q Consensus 231 ~~~~~~---~~~~~v~~l~~~~~~~~~l~t-g~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~ 301 (407)
...... +..+.|.|+.-- +..++.. ++...+|+++|.|. ++-..+++ +.++.+++++..+.|.
T Consensus 818 aq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRs------ce~~~E~kVcna~~Pna~~R~iaVa~~GN 889 (1034)
T KOG4190|consen 818 AQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARS------CEWTCELKVCNAPGPNALTRAIAVADKGN 889 (1034)
T ss_pred HhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeeccc------ccceeeEEeccCCCCchheeEEEeccCcc
Confidence 111111 122334443221 3344444 47789999999998 55555554 3456799999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCCCcccccccCC
Q 046899 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELK 331 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~ 331 (407)
++ |.+-..|.|.+-|.++++.+-.+....
T Consensus 890 ~l-Aa~LSnGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 890 KL-AAALSNGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred hh-hHHhcCCcEEEEecCCCceeccCCccc
Confidence 86 688889999999999988776655433
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=6.1e-08 Score=87.69 Aligned_cols=213 Identities=20% Similarity=0.261 Sum_probs=134.6
Q ss_pred eCCCceEEEEEeCC-CCeEEEE-----eeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899 81 IHPGEVNRIRELPQ-NSKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 81 ~h~~~v~~l~~~~~-~~~~l~t-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
-|...|+.+.++|. ....+|+ +|.-+.||||.+........+.....+.. |.....|+-.....
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka--dkvqm~WN~~gt~L-------- 232 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA--DKVQMKWNKLGTAL-------- 232 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc--ceeEEEeccCCceE--------
Confidence 37888999999984 3344543 35567899999874332222211111111 56667777443211
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE--eCCCcEEEEEcCCCCCCce
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV--GDDSCLILWDARSGSTPAV 232 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~ 232 (407)
-.++....+....+--++.++.+++++.......+ ...++|.++.|+|++ ..|+++ -.=.++.|||++- . .+
T Consensus 233 -LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~-~--~v 306 (566)
T KOG2315|consen 233 -LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRG-K--PV 306 (566)
T ss_pred -EEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCC-C--Ee
Confidence 11111222222333334555555555522222222 347899999999999 555554 3456899999873 3 24
Q ss_pred eeecccCcceEEEEecCCCCCEEEEEeC---CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 233 KVEKAHNADIHCVDWNPHDVNLILTGSA---DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
..+ -.++=+++-|+| .|++++.++- -|.|-|||+.+ .+++..+..-.. +-..|+|||++++.+...
T Consensus 307 ~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n------~K~i~~~~a~~t--t~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 307 FDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN------RKLIAKFKAANT--TVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccc------hhhccccccCCc--eEEEEcCCCcEEEEEecc
Confidence 333 345668899999 8888887765 47899999999 788988886544 457899999998633333
Q ss_pred -----CCeEEEEeCCC
Q 046899 310 -----DGILNIWDHEK 320 (407)
Q Consensus 310 -----d~~i~vwd~~~ 320 (407)
|+.++||+..-
T Consensus 376 PRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccEEecCCeEEEEecC
Confidence 78999999874
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=2.2e-09 Score=89.95 Aligned_cols=218 Identities=15% Similarity=0.281 Sum_probs=137.6
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC-Cc----ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP-NR----HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~-~~----~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
....|+++.|.- .|.+|+||...|.|.++.-.... +. ..+++|...
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E---------------------------- 75 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE---------------------------- 75 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccc----------------------------
Confidence 567799999876 88999999999999999865432 11 112222111
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCC------
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGST------ 229 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~------ 229 (407)
..-+..+ .-...|..|.|..+ +.+.|...+.|.+|++|-+.....
T Consensus 76 ---------------------------FDYLkSl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~n 127 (460)
T COG5170 76 ---------------------------FDYLKSL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAEN 127 (460)
T ss_pred ---------------------------hhhhhhc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcc
Confidence 0001111 13456778887654 445677778899999998875410
Q ss_pred -----------------------------------CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899 230 -----------------------------------PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 230 -----------------------------------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~ 274 (407)
|+......|..-+++++++. +...++++ .|-.|.+|++..+..
T Consensus 128 nls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~ 205 (460)
T COG5170 128 NLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDG 205 (460)
T ss_pred ccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCC
Confidence 01111135667788999998 77777665 477899999987431
Q ss_pred CCCCCceeeecCCC-----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc----cc------------cCCCc
Q 046899 275 DGVGSPIHKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD----YG------------ELKYP 333 (407)
Q Consensus 275 ~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~----~~------------~~~~~ 333 (407)
.--+-.++.|. .-|++..|||....+|.-++..|.|++-|++....... ++ +.-..
T Consensus 206 ---sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsS 282 (460)
T COG5170 206 ---SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSS 282 (460)
T ss_pred ---ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhh
Confidence 11223344443 36899999998777777788899999999995322211 11 11122
Q ss_pred ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 334 IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 334 v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
|..+.|+++ +.+|++-..- +|+|||++.
T Consensus 283 ISD~kFs~n------------------gryIlsRdyl-tvkiwDvnm 310 (460)
T COG5170 283 ISDFKFSDN------------------GRYILSRDYL-TVKIWDVNM 310 (460)
T ss_pred hcceEEcCC------------------CcEEEEeccc-eEEEEeccc
Confidence 333444443 6777766555 899999974
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.1e-07 Score=88.87 Aligned_cols=136 Identities=13% Similarity=0.148 Sum_probs=84.3
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEc--CCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---CcEEEEeCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDA--RSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---NSIHMFDRRK 271 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~ 271 (407)
....+|+|+|..++++...+|...+|.+ ..... ....+..+...+....|+| +++.|+..+.+ ..|.+||+..
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence 3567999999434444445676566644 32111 1333334445667899999 88887765443 3689999987
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
++. ..+......+....|+|||++|+.++.. ...|.++|+..++.. .+....+.+..++|||-
T Consensus 361 ------g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 361 ------GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ------CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCcccCceecCC
Confidence 443 3443333457789999999987655543 356888898875543 33333444556667653
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.01 E-value=7.7e-08 Score=86.10 Aligned_cols=298 Identities=18% Similarity=0.209 Sum_probs=176.7
Q ss_pred cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC-----
Q 046899 35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP----- 106 (407)
Q Consensus 35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg----- 106 (407)
-.||....+|.|. ++.....+ +.+|-+ |.........|. .|..+.|+| ++++|.|-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g---------~~~~~l~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGG---------PSKAKLVRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPE 98 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccc---------cchhheeeeecC-CceecccCc-ccceeeeeccCCccChh
Confidence 5789999999884 44444443 677722 222233334455 599999999 999999986544
Q ss_pred ----------cEEEEeCcCCCCcccccCcCCC--CC--------CC------CCcEEEEeccccccccccC---CCCC-c
Q 046899 107 ----------DVLIWDVEAQPNRHAVLGAADS--HP--------DL------DQSVVLWSIQDHVSALAAE---PGSA-K 156 (407)
Q Consensus 107 ----------~i~vwd~~~~~~~~~~~~~~~~--~~--------~~------d~~i~~w~~~~~~~~~~~~---~~~~-~ 156 (407)
.+.+||+.++..+..+...... .- +. ...+.++++........+. +.++ .
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceee
Confidence 4999999999877665543322 00 00 5667777753221111110 1111 1
Q ss_pred c--cccCCCCCcccc-----ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe----------CCCcE
Q 046899 157 S--TASGGANSKNAS-----KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG----------DDSCL 219 (407)
Q Consensus 157 ~--~~~~~~~~~~~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~----------~dg~i 219 (407)
| .+.+ ....++. ......+++|.+.....+.+-.-....=..+.|++.|..+++-.- ....+
T Consensus 179 FsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 179 FSISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred EEecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 1 1111 1111122 455667777777766555443322233356889998843333221 12568
Q ss_pred EEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE--eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899 220 ILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG--SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297 (407)
Q Consensus 220 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 297 (407)
.|++++.... .......++|...+|.| .++.+++. -.+-.+.++|++. .....+. ...=+.+-|+
T Consensus 258 yl~~~~e~~i---~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~-------Nl~~~~P--e~~rNT~~fs 324 (561)
T COG5354 258 YLLRITERSI---PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRG-------NLRFYFP--EQKRNTIFFS 324 (561)
T ss_pred EEEeeccccc---ceeccccccceeeeecc-cCCceeEEecccccceeeccccc-------ceEEecC--Cccccccccc
Confidence 8888886552 22226688999999999 66655544 4678999999996 5554444 3445678899
Q ss_pred CCCCCEEEEeeC---CCeEEEEeCCCCCccc-ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee------E
Q 046899 298 PDKSSVFGSSAE---DGILNIWDHEKIGEKQ-DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC------L 367 (407)
Q Consensus 298 ~~~~~ll~s~~~---d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~------~ 367 (407)
|.++++| .++- .|.|-+||....-.+. .+.+... +-..||||. .++.+ -
T Consensus 325 p~~r~il-~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~------------------qF~~~~~ts~k~ 383 (561)
T COG5354 325 PHERYIL-FAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDG------------------QFYDTDTTSEKL 383 (561)
T ss_pred CcccEEE-EecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCc------------------eEEEecCCCccc
Confidence 9999987 4443 4789999987644333 4544332 234577772 22221 1
Q ss_pred EEeeeEEEeecc
Q 046899 368 TMVKVLEIWRMI 379 (407)
Q Consensus 368 ~~d~~i~iwd~~ 379 (407)
-.|..|+|||+.
T Consensus 384 ~~Dn~i~l~~v~ 395 (561)
T COG5354 384 RVDNSIKLWDVY 395 (561)
T ss_pred ccCcceEEEEec
Confidence 346699999996
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.1e-08 Score=91.91 Aligned_cols=172 Identities=14% Similarity=0.157 Sum_probs=107.4
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 252 (407)
+.++|...... +.+..+...+...+|+|+| +.|+..+.+ ..|.+||+.+++. ..+....+.+....|+| ++
T Consensus 181 l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~---~~l~~~~g~~~~~~~Sp-DG 254 (430)
T PRK00178 181 LQRSDYDGARA-VTLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRR---EQITNFEGLNGAPAWSP-DG 254 (430)
T ss_pred EEEECCCCCCc-eEEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCE---EEccCCCCCcCCeEECC-CC
Confidence 55556654443 4455567788999999999 556554432 3689999988762 22333334455789999 78
Q ss_pred CEEE-EEeCCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCccccc
Q 046899 253 NLIL-TGSADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDY 327 (407)
Q Consensus 253 ~~l~-tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~ 327 (407)
+.|+ +.+.+| .|.++|+.+ ++ ...+..+........|+|+|+.|+.++..++ .|.++|+..++.. .+
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~------~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~l 326 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLAS------RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RV 326 (430)
T ss_pred CEEEEEEccCCCceEEEEECCC------CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee
Confidence 7766 455555 588889886 33 4445555556677899999998765554444 5777787765432 22
Q ss_pred ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe-e--eEEEeecc
Q 046899 328 GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV-K--VLEIWRMI 379 (407)
Q Consensus 328 ~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~--~i~iwd~~ 379 (407)
.........+.|||| +..|+..+.. + .|.+||+.
T Consensus 327 t~~~~~~~~~~~Spd------------------g~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 327 TFVGNYNARPRLSAD------------------GKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred ecCCCCccceEECCC------------------CCEEEEEEccCCceEEEEEECC
Confidence 211222234567777 5555544332 2 57788876
No 267
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.95 E-value=2.1e-07 Score=84.85 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=102.3
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce--ee-ecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV--KV-EKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRR 270 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~-~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~ 270 (407)
....++.++|++..++++.-....|.+|++........ .. ..........+.|+| +++++++. -.++.|.+|++.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeec
Confidence 45678999999944454444566899999987652111 11 123455678999999 77766554 557889999988
Q ss_pred CCCCCCCCCceeeecC------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-CCcc---cccccCCCcccCCCCc
Q 046899 271 KLTSDGVGSPIHKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-IGEK---QDYGELKYPIIHPAYS 340 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-~~~~---~~~~~~~~~v~~~~~s 340 (407)
... +..+.+..+.. .......|+++|+|++|+++...+++|.+|++.. ...+ ..+.......+.++++
T Consensus 223 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 223 PSD--GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp TTT--TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred ccC--CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 311 00122222221 1226889999999999999998899999999943 2222 2333323334556666
Q ss_pred CcchhccccceeeeeEeeCccceeeeEEEee-eEEEeecc
Q 046899 341 SDMLDIETKLLTSIGMHLIHGRLLVCLTMVK-VLEIWRMI 379 (407)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~i~iwd~~ 379 (407)
|+ +++|+.+..++ .|.+|++.
T Consensus 301 ~~------------------g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 301 PD------------------GRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TT------------------SSEEEEEETTTTEEEEEEEE
T ss_pred CC------------------CCEEEEEecCCCeEEEEEEe
Confidence 66 77777766544 89999885
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=2.3e-06 Score=73.89 Aligned_cols=161 Identities=12% Similarity=0.159 Sum_probs=106.3
Q ss_pred EEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCcee-eecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVK-VEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLT 273 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~ 273 (407)
+....+.|++ +++++... --+|.+|++..+...... ....-...-..|.|+| ++++....+. +++|-+|......
T Consensus 147 ~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 147 VHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred cceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCC
Confidence 7788999999 67766643 347999999977622111 1113345668999999 8888776654 7899999988631
Q ss_pred CCCCCCceeee---cC---CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc----cCCCcccCCCCcCcc
Q 046899 274 SDGVGSPIHKF---EG---HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG----ELKYPIIHPAYSSDM 343 (407)
Q Consensus 274 ~~~~~~~~~~~---~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~d~ 343 (407)
+..+.++.+ .. .......|..+++|++|.|+--....|-++.+........+. .+......
T Consensus 225 --g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~------- 295 (346)
T COG2706 225 --GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD------- 295 (346)
T ss_pred --ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc-------
Confidence 001222222 11 245678899999999998777777889999888654433332 22222233
Q ss_pred hhccccceeeeeEeeCccceeeeEEEee-eEEEeecc
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTMVK-VLEIWRMI 379 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~i~iwd~~ 379 (407)
|.+..+++.|++...++ .|.||.+.
T Consensus 296 -----------F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 296 -----------FNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred -----------ceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 33444478888777777 89999886
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=4.8e-07 Score=85.31 Aligned_cols=133 Identities=13% Similarity=0.060 Sum_probs=78.8
Q ss_pred CEEEEEECCCCCcEEEEEeCCCc--EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSC--LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRR 270 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~ 270 (407)
.....+|+|++..++++...++. |.++|+.+++. ..+..........+|+| ++++++..+. ++ .|.++|+.
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECC
Confidence 34567899999444444444444 56667766652 22222222334578999 7877766554 44 45556776
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEKIGEKQDYGELKYPIIHPAYSS 341 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 341 (407)
. ++. ..+... .......|+|+|++|+.+...++. +.++++. ++..+.+....+.+..++|||
T Consensus 383 ~------g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 383 T------GAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred C------CCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 5 332 333322 122345799999988766665554 6677764 455566655556677788876
No 270
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.90 E-value=7e-08 Score=87.98 Aligned_cols=145 Identities=12% Similarity=0.192 Sum_probs=102.0
Q ss_pred cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec
Q 046899 169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~ 248 (407)
+-..++.+.++|..+.+.+..+......-..+.|+|++ +++++++.||.|.++|+.+.+ .+..... .....+++++
T Consensus 11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~--~v~~i~~-G~~~~~i~~s 86 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGK--VVATIKV-GGNPRGIAVS 86 (369)
T ss_dssp EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSS--EEEEEE--SSEEEEEEE-
T ss_pred EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCccc--EEEEEec-CCCcceEEEc
Confidence 45567888889999999999887654444557899999 778888899999999999988 5666543 4456889999
Q ss_pred CCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCceeeecCC-------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 249 PHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIHKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 249 ~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+ +++++++++ ..+.+.++|.++ .+++..+... ...+..+..+|..+..+++--.-+.|-+-|...
T Consensus 87 ~-DG~~~~v~n~~~~~v~v~D~~t------le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 87 P-DGKYVYVANYEPGTVSVIDAET------LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred C-CCCEEEEEecCCCceeEecccc------ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9 899888776 578999999999 7888887643 346788888888885444555558888889887
Q ss_pred CCcc
Q 046899 321 IGEK 324 (407)
Q Consensus 321 ~~~~ 324 (407)
.+.+
T Consensus 160 ~~~~ 163 (369)
T PF02239_consen 160 PKNL 163 (369)
T ss_dssp SSCE
T ss_pred cccc
Confidence 6444
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=7.2e-09 Score=88.18 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=117.6
Q ss_pred ccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEE
Q 046899 168 ASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCV 245 (407)
Q Consensus 168 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l 245 (407)
++.+.+..+-+.+..++-. +.+. ....|.++.|...+ +++..|..+|.|...|+|.+.+. .......|.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 3344445555555555432 2232 56788999999888 79999999999999999986311 122334689999998
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEE--cCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQW--SPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
..-..++.+|++.+.+|.|++||+|..+. ++.+.++.+|-..-.-+-+ .+....+ ++++.|...|+|.++.+..
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~---~~~V~qYeGHvN~~a~l~~~v~~eeg~I-~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKC---KKSVMQYEGHVNLSAYLPAHVKEEEGSI-FSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhc---ccceeeeecccccccccccccccccceE-EEccCeeEEEEEecccCce
Confidence 87665778999999999999999998433 3348888888654333333 4455545 5899999999999999888
Q ss_pred ccccccC----CCcccCCCCcCc
Q 046899 324 KQDYGEL----KYPIIHPAYSSD 342 (407)
Q Consensus 324 ~~~~~~~----~~~v~~~~~s~d 342 (407)
+.+++-. +..+..++|...
T Consensus 381 l~tipf~~s~~e~d~~sv~~~sr 403 (425)
T KOG2695|consen 381 LCTIPFPYSASEVDIPSVAFDSR 403 (425)
T ss_pred eeccCCCCccccccccceehhcc
Confidence 8776542 223455666443
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=2.5e-08 Score=86.66 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=101.0
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCCCCEEEEEeCCC---cEEEEeCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADN---SIHMFDRRK 271 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg---~i~vwd~~~ 271 (407)
...+..++.+ .++|.+..+....+++++.... ..... ..-...-+++.+.. +......+..-| .+.+|....
T Consensus 65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeE-eecccCcceeeeee-ccceEEEEeecCCceeeeeecccc
Confidence 3445567777 8899988888888888876552 11111 11122234444544 333444443334 444444443
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccc
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKL 350 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~ 350 (407)
.+...+-+|-..+++|+|+||+++|+ |+..|..||+-.....-.+..+. +|..-|..++.-+
T Consensus 142 -------~~~~~~lGhvSml~dVavS~D~~~Ii-taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--------- 204 (390)
T KOG3914|consen 142 -------GRCEPILGHVSMLLDVAVSPDDQFII-TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--------- 204 (390)
T ss_pred -------cCcchhhhhhhhhheeeecCCCCEEE-EecCCceEEEEecCcccchhhhccccHhheeeeeecc---------
Confidence 23344557999999999999999775 99999999998888766666554 5777666665522
Q ss_pred eeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 351 LTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++++.|++|++||+.
T Consensus 205 ----------~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 205 ----------NYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred ----------CceeeecCCCCcEEEEecc
Confidence 3458999999999999998
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.84 E-value=3e-06 Score=75.80 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=82.4
Q ss_pred ECC-CCCcEEEEEeCCCcEEEEEcCCCCCC---ceeeec-------ccCcceEEEEecCCCCCEEEEEe----------C
Q 046899 202 FCP-SSAQEFCSVGDDSCLILWDARSGSTP---AVKVEK-------AHNADIHCVDWNPHDVNLILTGS----------A 260 (407)
Q Consensus 202 ~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~-------~~~~~v~~l~~~~~~~~~l~tg~----------~ 260 (407)
|.+ ++ .++....+ |.|.+-|+...... ....+. -..+...-++++| +++.+++.. .
T Consensus 201 ~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 201 YSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred eEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 345 66 55555555 99999997544311 111111 1223344599999 666666632 2
Q ss_pred CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC-CEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
.+.|.++|..+ ++.+..+.. ...+..++++||++ .|+++...++.|.+.|+.+++.+.++.
T Consensus 278 ~~~V~ViD~~t------~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 278 SRFLFVVDAKT------GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCEEEEEECCC------CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 25799999999 888888874 45789999999999 777677678999999999998888873
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.80 E-value=1.7e-06 Score=89.40 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=98.9
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc---------------cCcceEEEEecCCCCC-EEEEEeCC
Q 046899 198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---------------HNADIHCVDWNPHDVN-LILTGSAD 261 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~v~~l~~~~~~~~-~l~tg~~d 261 (407)
..++++|++..++++.+.++.|++||..++. ...+.+ .-.....|+++| ++. ++++-..+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n 761 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSES 761 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCC
Confidence 5789999554788888889999999987764 111111 112356799999 666 55566667
Q ss_pred CcEEEEeCCCCCCCCCCCce-------------eeecCC--------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 262 NSIHMFDRRKLTSDGVGSPI-------------HKFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 262 g~i~vwd~~~~~~~~~~~~~-------------~~~~~h--------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+.|++||+.+ +... ..+..+ -.....++++++|. ++++-+.++.|++||..+
T Consensus 762 ~~Irv~D~~t------g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 762 SSIRALDLKT------GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred CeEEEEECCC------CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC
Confidence 8999999886 2211 011000 11246899999998 677888899999999987
Q ss_pred CCcccccccCCC------cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 321 IGEKQDYGELKY------PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 321 ~~~~~~~~~~~~------~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+... ++.+... ......|+ .+. . ......+..+++-+.+++|++||+..
T Consensus 835 g~v~-tiaG~G~~G~~dG~~~~a~l~-----~P~----G-Iavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 835 KRVT-TLAGTGKAGFKDGKALKAQLS-----EPA----G-LALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CeEE-EEeccCCcCCCCCcccccccC-----Cce----E-EEEeCCCCEEEEECCCCEEEEEECCC
Confidence 5433 2222111 00001110 001 1 12222255666777788999999974
No 275
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=2.7e-06 Score=71.30 Aligned_cols=214 Identities=11% Similarity=0.114 Sum_probs=107.5
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN 164 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (407)
.=+.++|+| ++.+||.+...|+|+++|+.... +..+........+....|.- +.+.... ......
T Consensus 45 QWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiag---------l~Fl~~~----~s~~ws 109 (282)
T PF15492_consen 45 QWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAG---------LIFLEYK----KSAQWS 109 (282)
T ss_pred hheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceee---------eEeeccc----cccccc
Confidence 356799999 88999999999999999998643 22332221111111111110 0000000 011112
Q ss_pred CccccccCCCCCCCCCC-----CCcCceeeEe--e-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 165 SKNASKSGGNGDKPLES-----PSIGARGKYL--G-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~-----~~~~~~~~~~--~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
..++.....|.++-+-+ +..+....+. . +...|+++.++|.. ++|+.||.... +.+. ..
T Consensus 110 ~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~------s~ 176 (282)
T PF15492_consen 110 YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM------SK 176 (282)
T ss_pred eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc------cc
Confidence 22333333333332221 1222223332 2 35689999999998 66666654221 0000 01
Q ss_pred ccCcceEEEEecCCCCCEEE-EEeCCCc------EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 237 AHNADIHCVDWNPHDVNLIL-TGSADNS------IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~-tg~~dg~------i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
+....+++-..-...+.+.. +...|+. -.+|.+-+ .........-...|..|..||||. +||+...
T Consensus 177 a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~------~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~ 249 (282)
T PF15492_consen 177 ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS------FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHF 249 (282)
T ss_pred ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc------eeeeeccccCCCceEEEEECCCCC-EEEEEEc
Confidence 11222222222111111211 1111221 12222221 111111122457899999999999 5589999
Q ss_pred CCeEEEEeCCCCCcccccccCCCc
Q 046899 310 DGILNIWDHEKIGEKQDYGELKYP 333 (407)
Q Consensus 310 d~~i~vwd~~~~~~~~~~~~~~~~ 333 (407)
+|.|.+|++.+.+..+.....+.|
T Consensus 250 sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 250 SGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred CCeEEEEecCcchhhcccchhhCC
Confidence 999999999998888877665554
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=6.4e-08 Score=90.02 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=128.1
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
+.....+|++|+. +..++|+|+.||.++|-.+.+........+-..
T Consensus 12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa--------------------------------- 57 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA--------------------------------- 57 (1189)
T ss_pred CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCccccccccc---------------------------------
Confidence 4567789999998 677999999999999999887543322211100
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
..+...-+++.+|...|..+.|+... +.|.++..+|.|.+|=+-.++.-....-...++
T Consensus 58 --------------------~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKS 116 (1189)
T KOG2041|consen 58 --------------------ASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKS 116 (1189)
T ss_pred --------------------ccccchhhhhccCcceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCcc
Confidence 01122346788999999999999887 779999999999999999887422333334567
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
-|.+++|+. +|..++..-.||.|.+=.+.. ..+..-.-.......+.|++|.+.+| -+-..|.+.++|-.
T Consensus 117 vV~SmsWn~-dG~kIcIvYeDGavIVGsvdG-------NRIwgKeLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnq 186 (1189)
T KOG2041|consen 117 VVVSMSWNL-DGTKICIVYEDGAVIVGSVDG-------NRIWGKELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQ 186 (1189)
T ss_pred EEEEEEEcC-CCcEEEEEEccCCEEEEeecc-------ceecchhcchheccceeecccHHHHH-hhhcCCcEEEeccc
Confidence 789999999 999999999999988876653 33321111123345789999998765 67778999999865
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=1.8e-08 Score=59.53 Aligned_cols=38 Identities=34% Similarity=0.842 Sum_probs=34.9
Q ss_pred CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 279 SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 279 ~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
+++.++.+|..+|++++|+|++.++ ++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~-~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFL-ASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEE-EEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccc-eeeCCCCEEEEEC
Confidence 5788999999999999999998855 7999999999997
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=1.7e-08 Score=85.93 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=115.2
Q ss_pred EEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC
Q 046899 211 CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA 290 (407)
Q Consensus 211 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~ 290 (407)
++.+.+-.|-+-|+.++. ...+. ..+.|.++.|.- .++++..|...|.|..+|+|.... +.+.+...+. |...
T Consensus 228 fs~G~sqqv~L~nvetg~---~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnq-G~~~~a~rly-h~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH---QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQ-GNGWCAQRLY-HDSS 300 (425)
T ss_pred ecccccceeEEEEeeccc---ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeeccc-CCCcceEEEE-cCcc
Confidence 556667889999999886 33443 678899999987 789999999999999999997321 1245556665 8999
Q ss_pred EEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899 291 VLCVQWSP-DKSSVFGSSAEDGILNIWDHEKIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC 366 (407)
Q Consensus 291 v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~ 366 (407)
|++++.-. ++++|+ +.+.+|+|++||++..++ ++.+++|-..-.-+.+. ...-+..|++
T Consensus 301 vtslq~Lq~s~q~Lm-aS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~----------------v~~eeg~I~s 363 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLM-ASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH----------------VKEEEGSIFS 363 (425)
T ss_pred hhhhhhhccccceEe-eccCcCceeEeeehhhhcccceeeeecccccccccccc----------------cccccceEEE
Confidence 99998877 667665 778899999999998887 78888876543222221 1122557888
Q ss_pred EEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 367 LTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 367 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
++.|=..|||.+. .+.++.++.
T Consensus 364 ~GdDcytRiWsl~------~ghLl~tip 385 (425)
T KOG2695|consen 364 VGDDCYTRIWSLD------SGHLLCTIP 385 (425)
T ss_pred ccCeeEEEEEecc------cCceeeccC
Confidence 8899999999998 566666554
No 279
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.74 E-value=3e-08 Score=58.60 Aligned_cols=38 Identities=18% Similarity=0.515 Sum_probs=35.7
Q ss_pred CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 046899 185 GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD 223 (407)
Q Consensus 185 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 223 (407)
+++..+.+|...|++|+|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 5678899999999999999998 8999999999999997
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.6e-06 Score=71.72 Aligned_cols=167 Identities=10% Similarity=-0.026 Sum_probs=110.3
Q ss_pred CccccccCCCCCCCCCCCCcCc-eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--c
Q 046899 165 SKNASKSGGNGDKPLESPSIGA-RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--D 241 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~ 241 (407)
..++.|+..|...+|...+.+. .+....|...|+-+.-.-+...-+..++.|.++++.++.-+..... .|.. .
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~----~h~~~~~ 160 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA----VHNQNLT 160 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce----eeccccc
Confidence 3466678888999998875543 3333334443322211111112355677889999998876552112 2322 3
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+.++.+++ ++.++++.+....|-.|.+.... ...+. .....++.-.+..|+.... .||++..||++.|||++.
T Consensus 161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s----ey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES----EYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcC-CCceEEEecCCCcceEEEeCCcc----ceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecc
Confidence 78999999 99999999999999999987643 23333 2333455667889998777 679999999999999997
Q ss_pred CCccccc-----ccCCCcccCCCCcC
Q 046899 321 IGEKQDY-----GELKYPIIHPAYSS 341 (407)
Q Consensus 321 ~~~~~~~-----~~~~~~v~~~~~s~ 341 (407)
...+... +.|.+.+..+.||+
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecC
Confidence 6554332 34666666666664
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.69 E-value=1e-05 Score=82.25 Aligned_cols=248 Identities=14% Similarity=0.174 Sum_probs=134.0
Q ss_pred CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
..++++++++ +..+..+|.+-++ .++.+......+.... -...|.+++|+| |+++||..+.+++|.+-+-.
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~---~~~~~~~~~~~E~VG~--vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILV---REDPDPDEDEIEIVGS--VDSGILAASWSP-DEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEE---EccCCCCCceeEEEEE--EcCcEEEEEECC-CcCEEEEEeCCCEEEEEecc
Confidence 3557777775 2233334434333 2233334444555553 478999999999 88899999989999887533
Q ss_pred CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeec
Q 046899 115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGH 193 (407)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~ 193 (407)
- ..+.+..-+... -|.-+.-++.-+.++..++....+.++. ..-+... ......+. +
T Consensus 151 f-d~i~E~~l~~~~----~~~~~~VsVGWGkKeTQF~Gs~gK~aa~----------------~~~~p~~~~~d~~~~s-~ 208 (928)
T PF04762_consen 151 F-DPISEVPLDSDD----FGESKHVSVGWGKKETQFHGSAGKAAAR----------------QLRDPTVPKVDEGKLS-W 208 (928)
T ss_pred c-eEEEEeecCccc----cCCCceeeeccCcccCccCcchhhhhhh----------------hccCCCCCccccCccc-c
Confidence 2 222111111110 0111111222222222222111111000 0000000 00112222 4
Q ss_pred ccCEEEEEECCCCCcEEEEEeC---C---CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC---CCcE
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGD---D---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA---DNSI 264 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i 264 (407)
...-..|+|-.|| .+||+.+- . ..+++|+-+ +. .......-.+--.+++|-| .|+++|+... ...|
T Consensus 209 dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 209 DDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDV 283 (928)
T ss_pred CCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEE
Confidence 4456789999999 78888774 2 579999854 55 3333333333345789999 8999998764 3467
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
.+|..+-... ++-...+......|..++|++++. +||..-.|. |.+|-..+..-
T Consensus 284 vFfErNGLrh---geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 284 VFFERNGLRH---GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred EEEecCCcEe---eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEE
Confidence 7776553211 111111223456899999999999 666766554 99999888653
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=8.3e-08 Score=80.73 Aligned_cols=174 Identities=15% Similarity=0.187 Sum_probs=107.7
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc-eeeeccc-----CcceEEEEecCCCCCEEEEEeCCCcE
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA-VKVEKAH-----NADIHCVDWNPHDVNLILTGSADNSI 264 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~-----~~~v~~l~~~~~~~~~l~tg~~dg~i 264 (407)
..|.-.|++|.|+.+. ..+++ +.|-+|.+|++.-..... +.....| ..-|++..|+|...+.+.-.+..|.|
T Consensus 169 NaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 169 NAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccceeEeeeeeecCch-heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 3588889999999987 45555 468899999987654211 2222333 34578999999878888888999999
Q ss_pred EEEeCCCCCC-CCCCCcee----------eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-cccccCCC
Q 046899 265 HMFDRRKLTS-DGVGSPIH----------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-QDYGELKY 332 (407)
Q Consensus 265 ~vwd~~~~~~-~~~~~~~~----------~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-~~~~~~~~ 332 (407)
++-|+|...- +. ...+. -+.+-...|..+.|+++|++++ +- .-.+|++||++..+.. .+++-|..
T Consensus 247 kl~DlRq~alcdn-~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sR-dyltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 247 KLNDLRQSALCDN-SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SR-DYLTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred EehhhhhhhhccC-chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Ee-ccceEEEEecccccCCceeechHHH
Confidence 9999994210 00 11111 1122345799999999999774 44 3578999999975543 44433221
Q ss_pred c---ccCCCCcCcchhccccceee--eeEeeCccceeeeEEEeeeEEEee
Q 046899 333 P---IIHPAYSSDMLDIETKLLTS--IGMHLIHGRLLVCLTMVKVLEIWR 377 (407)
Q Consensus 333 ~---v~~~~~s~d~~~~~~~~~~~--~~~~~~~~~~i~~~~~d~~i~iwd 377 (407)
- +..+- ....+.. -..++|....+++|+......||-
T Consensus 324 l~~~l~d~Y--------EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 324 LMDELNDVY--------ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHhhh--------hccceeeeEEEEecCCcccccccccccceeeec
Confidence 1 00000 0111211 134555566777777766555554
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.68 E-value=1.1e-06 Score=81.37 Aligned_cols=260 Identities=16% Similarity=0.098 Sum_probs=144.8
Q ss_pred CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCC--CC----------CCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS--HP----------DLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~--~~----------~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
+..+.+++.+|.|..+|..+++.+-........ .+ ..++.+..+|..++................-..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~ 144 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVA 144 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEE
Confidence 346777777888888888877654322211110 01 116777777776654432222211111100011
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecccCEE-----EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVE-----DVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~-----~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
+..+..+..++.+..+|..+++.+-.+......+. +.... + ..++.+..++.+..+|.++++ ........
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~--~~W~~~~~ 219 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQ--PLWEQRVA 219 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCC--Eeeeeccc
Confidence 23455567788899999988887665543222111 11111 2 357778888999999999887 23221110
Q ss_pred -Cc---c---eEEEEecC-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 239 -NA---D---IHCVDWNP-HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 239 -~~---~---v~~l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
.. . +..+.-+| ..+..+++++.+|.++.||.++ ++.+..... . ....... .+.+++ .++.|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G~~~W~~~~-~-~~~~p~~--~~~~vy-v~~~~ 288 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------GRVLWKRDA-S-SYQGPAV--DDNRLY-VTDAD 288 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------CcEEEeecc-C-CccCceE--eCCEEE-EECCC
Confidence 00 0 00011111 0235677788899999999988 777665542 1 1122222 344465 66789
Q ss_pred CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899 311 GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL 390 (407)
Q Consensus 311 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~ 390 (407)
|.+..+|..+++.+-........ ..-+|- . .++.|+.++.+|.|+++|.. +++.+
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~---~~ssp~-------------i---~g~~l~~~~~~G~l~~~d~~------tG~~~ 343 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYR---QLTAPA-------------V---VGGYLVVGDFEGYLHWLSRE------DGSFV 343 (377)
T ss_pred CeEEEEECCCCcEEEccccccCC---ccccCE-------------E---ECCEEEEEeCCCEEEEEECC------CCCEE
Confidence 99999999987765443221111 111111 1 15688889999999999987 56665
Q ss_pred HHHhhc
Q 046899 391 AELDKF 396 (407)
Q Consensus 391 ~~~~~h 396 (407)
.++..+
T Consensus 344 ~~~~~~ 349 (377)
T TIGR03300 344 ARLKTD 349 (377)
T ss_pred EEEEcC
Confidence 554433
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=1.2e-05 Score=74.93 Aligned_cols=133 Identities=15% Similarity=0.011 Sum_probs=78.9
Q ss_pred cCEEEEEECCCCCcEEEEEeCC--CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCC--cEEEEeC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDD--SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADN--SIHMFDR 269 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg--~i~vwd~ 269 (407)
+......|+|+|..++++.+.+ ..|.++|+..+. ...+..+........|+| |++.|+..+ ..| .|.+.|+
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 3445667999996565565544 457777887665 233333333334568999 777665554 334 5777777
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--------CeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GILNIWDHEKIGEKQDYGELKYPIIHPAYSS 341 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 341 (407)
.. ++..+ +...... ...|+|+|++|+.+.... ..|.+.|+..+.. +.+... .....+.|||
T Consensus 309 ~~------g~~~r-lt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SP 377 (419)
T PRK04043 309 NS------GSVEQ-VVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSS 377 (419)
T ss_pred CC------CCeEe-CccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECC
Confidence 65 33322 2211111 248999999886665543 3688889877543 333332 2233577888
Q ss_pred c
Q 046899 342 D 342 (407)
Q Consensus 342 d 342 (407)
|
T Consensus 378 D 378 (419)
T PRK04043 378 D 378 (419)
T ss_pred C
Confidence 8
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=1.2e-07 Score=77.80 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=96.9
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEe-----CCCcEEEEeCCCCCCCCCCCce
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGS-----ADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~-----~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
+-++++..||.+.+++.+.-.. ...... .|.+ -.+.+... .++.+.++. .-+..+.|+++..+ ..+
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~~~-~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~-----t~~ 173 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLA-LMSRIPSIHSG-SASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIK-----TLI 173 (319)
T ss_pred CceEecCCCceEEEEechHHHh-hhhhccccccc-ccccceee-cccEEecCCcceEeeccceeeecccccc-----ccc
Confidence 5689999999999999876321 111111 1211 11222333 344444432 22344556655421 111
Q ss_pred eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-cccccCCCcccCCCCcCcchhccccceeeeeEeeCc
Q 046899 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH 360 (407)
Q Consensus 282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~ 360 (407)
...+. ...|++++-+|...+++++|+.||.+.+||.++...+ ..+..|+.+++.+-|.|..
T Consensus 174 ~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~----------------- 235 (319)
T KOG4714|consen 174 PSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN----------------- 235 (319)
T ss_pred ccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC-----------------
Confidence 11122 2349999999999999999999999999999987555 3456799999999998873
Q ss_pred cceeeeEEEeeeEEEeecc
Q 046899 361 GRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 361 ~~~i~~~~~d~~i~iwd~~ 379 (407)
.+.+++.+.||.+--||-+
T Consensus 236 p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred chheeEecCCCcEEEEcCC
Confidence 7789999999999999987
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.67 E-value=5.6e-06 Score=85.61 Aligned_cols=119 Identities=11% Similarity=0.136 Sum_probs=84.9
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-----------eecc--------cCcceEEEEecCCCCCEEE
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-----------VEKA--------HNADIHCVDWNPHDVNLIL 256 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~--------~~~~v~~l~~~~~~~~~l~ 256 (407)
....|+++|++..++++-+.++.|++||+.++...... .+-. .-....++++++ ++++++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEE
Confidence 35679999998557778888899999999875411000 0000 011235889999 888888
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCceeeecC--------------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEG--------------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 257 tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
+-..++.|++||..+ +... ++.+ .-.....|+++++|+ ++++-+.++.|++||+.+.+
T Consensus 820 ADs~N~rIrviD~~t------g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 820 ADSYNHKIKKLDPAT------KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EECCCCEEEEEECCC------CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence 888899999999976 3332 2221 123568899999997 77788899999999998865
Q ss_pred c
Q 046899 323 E 323 (407)
Q Consensus 323 ~ 323 (407)
.
T Consensus 892 ~ 892 (1057)
T PLN02919 892 A 892 (1057)
T ss_pred c
Confidence 4
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.64 E-value=3.8e-06 Score=77.85 Aligned_cols=245 Identities=16% Similarity=0.044 Sum_probs=138.2
Q ss_pred CeEEEEeeCCCcEEEEeCcCCCCcccccCcC--CCCC----------CCCCcEEEEeccccccccccCCCCCcc-----c
Q 046899 96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAA--DSHP----------DLDQSVVLWSIQDHVSALAAEPGSAKS-----T 158 (407)
Q Consensus 96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~----------~~d~~i~~w~~~~~~~~~~~~~~~~~~-----~ 158 (407)
+..++.++.+|.+..+|..+++.+-...... ...+ ..++.+..+|..++............. .
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~ 184 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA 184 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC
Confidence 4567777888999999998876543222111 0111 117788888887664432221111000 0
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc----C---EEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED----T---VEDVQFCP--SSAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~---v~~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
.....+..+..+..++.+..+|..+++.+-....... . ...+.-.| .+ ..++.++.+|.+..+|.++++
T Consensus 185 sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~- 262 (377)
T TIGR03300 185 SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGR- 262 (377)
T ss_pred CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCc-
Confidence 0000112345566777888888877765433221000 0 00011111 13 467777889999999999887
Q ss_pred CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCCEEEEee
Q 046899 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ll~s~~ 308 (407)
...... ... ...... .+..+++++.+|.+..+|..+ ++.+...... .....+... .+..+ .+++
T Consensus 263 -~~W~~~-~~~-~~~p~~---~~~~vyv~~~~G~l~~~d~~t------G~~~W~~~~~~~~~~ssp~i--~g~~l-~~~~ 327 (377)
T TIGR03300 263 -VLWKRD-ASS-YQGPAV---DDNRLYVTDADGVVVALDRRS------GSELWKNDELKYRQLTAPAV--VGGYL-VVGD 327 (377)
T ss_pred -EEEeec-cCC-ccCceE---eCCEEEEECCCCeEEEEECCC------CcEEEccccccCCccccCEE--ECCEE-EEEe
Confidence 333332 111 112222 346777888899999999988 7776555321 112222222 24445 4888
Q ss_pred CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899 309 EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW 376 (407)
Q Consensus 309 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw 376 (407)
.+|.|.++|..+++.+.++..+..++..... + . ++.|+.++.||.|+.+
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~---~-------------~---~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPV---V-------------V---GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCE---E-------------E---CCEEEEEeCCceEEEe
Confidence 9999999999998888777655443222211 1 1 4568888889988765
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.7e-06 Score=81.49 Aligned_cols=316 Identities=13% Similarity=0.104 Sum_probs=170.2
Q ss_pred eCCCceEEEEEeCC-----------CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-----------------
Q 046899 81 IHPGEVNRIRELPQ-----------NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----------------- 132 (407)
Q Consensus 81 ~h~~~v~~l~~~~~-----------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----------------- 132 (407)
.|+..|+.++|.|. ..-+||++.-.|.|.+||+..+..+..+..+...+.+.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh 132 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH 132 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec
Confidence 48899999999872 12378888889999999999887776666666555444
Q ss_pred -CCcEEEEeccccccccccCCCCC--cccccCCCCCc-cccccCCCCCCCCCC-------CCcCceeeEeeccc------
Q 046899 133 -DQSVVLWSIQDHVSALAAEPGSA--KSTASGGANSK-NASKSGGNGDKPLES-------PSIGARGKYLGHED------ 195 (407)
Q Consensus 133 -d~~i~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~i~d~-------~~~~~~~~~~~~~~------ 195 (407)
..++.+|+..++........... .......++.. +...+..|.+.+-+. -.++..+.-..|.+
T Consensus 133 ~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 133 GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence 56889998888765444333222 22222333322 222222222222111 01112222112211
Q ss_pred -------------------CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC-CCCEE
Q 046899 196 -------------------TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLI 255 (407)
Q Consensus 196 -------------------~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l 255 (407)
....++|+|.-.+.+... ....+.++|++-.. +.....--.+.+.-+.|-|. ....|
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~--~l~vvpier~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYEC--CLAVVPIERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhc--eeEEEEeccCCcceeEeccCCCcceE
Confidence 011356788764544443 46789999998766 34433333445556777661 34578
Q ss_pred EEEeCCCcEEEEeCCCCCCCCC----------CCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 256 LTGSADNSIHMFDRRKLTSDGV----------GSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 256 ~tg~~dg~i~vwd~~~~~~~~~----------~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
+++..||.+.+|-.+.....-. +.....+.. .+-.+......|..+..++.--.+|...+|.+++++..
T Consensus 290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 8999999999997655211000 011111111 01122233344553333344445788999999975544
Q ss_pred cccccC-CCcccCCCCcCcchhcccccee-----------------------eeeEeeCcc-------ceeeeEEEeeeE
Q 046899 325 QDYGEL-KYPIIHPAYSSDMLDIETKLLT-----------------------SIGMHLIHG-------RLLVCLTMVKVL 373 (407)
Q Consensus 325 ~~~~~~-~~~v~~~~~s~d~~~~~~~~~~-----------------------~~~~~~~~~-------~~i~~~~~d~~i 373 (407)
...... ..-+..+.|.-+-..+-...+. ++....+-+ ..++.|...|+|
T Consensus 370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred cccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 332211 1111111221110000000000 000011111 135588889999
Q ss_pred EEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899 374 EIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 405 (407)
.|+|+. ++..-+.+..|...|.++.|
T Consensus 450 ~vvdvs------t~~v~~~fsvht~~VkgleW 475 (1062)
T KOG1912|consen 450 DVVDVS------TNAVAASFSVHTSLVKGLEW 475 (1062)
T ss_pred EEEEec------chhhhhhhcccccceeeeee
Confidence 999999 89999999999999999877
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.63 E-value=1e-05 Score=72.29 Aligned_cols=138 Identities=14% Similarity=0.174 Sum_probs=104.4
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCC-cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDS-CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
++.+.|.-..+.-+. .-++.|..|| .+-++|.++++ .+.+...-+.|.++..+| +|..++.+.....+-+.|+.
T Consensus 357 ~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEec
Confidence 455567777776666 4688899998 99999999887 455566778899999999 99999999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC----CeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED----GILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
+ +.+...-+...+-|+.++|||+++++ |-+--+ ..|+++|+..++....- ....--.+.+|.||
T Consensus 432 n------gnv~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d 499 (668)
T COG4946 432 N------GNVRLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPD 499 (668)
T ss_pred C------CCeeEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCC
Confidence 8 66655555567889999999999975 555444 57999999986554322 22222236777777
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.1e-06 Score=76.76 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=79.3
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI 255 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 255 (407)
++.++..+.+..+.+..+...|..++|+|...-++..++.+.+|+|.|+++.. ....+..+ ..+++++|+.++.+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCccee
Confidence 44445555566666777888999999999874589999999999999999887 56666666 8899999999788999
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 046899 256 LTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 256 ~tg~~dg~i~vwd~~~~~ 273 (407)
+.|...|.|.|||+|.+.
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999999865
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.2e-06 Score=82.59 Aligned_cols=263 Identities=15% Similarity=0.100 Sum_probs=177.1
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
|...-+++.|+| .| +||-|+. ..|.|-|..+-+.++.+..|...+ +..-|-.......+.. ..
T Consensus 14 ~~sN~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V-----~~VrWap~~~p~~llS---------~~ 76 (1062)
T KOG1912|consen 14 SRSNRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAV-----TSVRWAPAPSPRDLLS---------PS 76 (1062)
T ss_pred CcccccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccce-----eEEEeccCCCchhccC---------cc
Confidence 444467888888 55 7888876 489999999888888887776532 3333433221111100 01
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC---CCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS---SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
..+-.++++...|.|.+||...+..+..+..|..++..++|-+. ....|++-.....|.+|+..+|+ ........
T Consensus 77 ~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys 154 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYS 154 (1062)
T ss_pred ccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--eeeccccC
Confidence 23345677888899999999999988899999999999999763 22567777778899999999999 56666666
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC-CCCCCceeeecCCCC-------------------------CEE
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS-DGVGSPIHKFEGHSA-------------------------AVL 292 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~h~~-------------------------~v~ 292 (407)
.....|+.++|.+.+.+..-+..|.+.+-+.-..++ ++.++..+.-..|.+ ...
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 677888999999999998888899888877644332 111222222222222 122
Q ss_pred EEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899 293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV 372 (407)
Q Consensus 293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 372 (407)
.++|+|.-+.++ -...-..+.++|++-...+....-..+.+.=+.+-|| +..+.+.++-.+|.
T Consensus 235 ~faf~p~~rn~l-fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~----------------~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 235 QFAFSPHWRNIL-FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD----------------PRRDALFCLHSNGR 297 (1062)
T ss_pred hhhcChhhhceE-EEEeccceEEEcchhhceeEEEEeccCCcceeEeccC----------------CCcceEEEEecCCe
Confidence 356788766554 3344678999999987777666554443222333333 33667888889999
Q ss_pred EEEeeccc
Q 046899 373 LEIWRMID 380 (407)
Q Consensus 373 i~iwd~~~ 380 (407)
+.||--.+
T Consensus 298 ltirvrk~ 305 (1062)
T KOG1912|consen 298 LTIRVRKE 305 (1062)
T ss_pred EEEEEeec
Confidence 99997653
No 292
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.59 E-value=7.3e-06 Score=74.72 Aligned_cols=219 Identities=12% Similarity=0.148 Sum_probs=122.7
Q ss_pred CCCceEEEEEeCCCCeEEEEee-CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccc----ccccccCCCCCc
Q 046899 82 HPGEVNRIRELPQNSKIVATHT-DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDH----VSALAAEPGSAK 156 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~----~~~~~~~~~~~~ 156 (407)
.......++++| ++++|+++. .+|.|.++++.....+... ..++..... .+....++..+.
T Consensus 85 ~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~-------------~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 85 GGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEV-------------VQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp SSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEE-------------EEEEESEEEESSTTTTSSTCEEEEE
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCccccee-------------eeecccCCCCCcccccccccceeEE
Confidence 445566788888 666666665 5899999999874222111 001111000 001111222222
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcC--c--eeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CCCC
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIG--A--RGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--SGST 229 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~--~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~ 229 (407)
+.+.++. .++.......|.+++..... . ...+. .....-..+.|+|++...+++.-.++.|.++++. ++..
T Consensus 151 ~~pdg~~--v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 151 FSPDGRF--VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp E-TTSSE--EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred ECCCCCE--EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 2222221 12222233445555554433 2 11222 2345678999999995566666778999999998 3321
Q ss_pred Cceeeecc----c--CcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899 230 PAVKVEKA----H--NADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 230 ~~~~~~~~----~--~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 302 (407)
........ . ......|.++| ++++|+++. ..+.|.+|++.... +..+.+..+.......+.++++|+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred eEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 11111111 1 12567899999 888877765 46789999995421 002334444434455899999999999
Q ss_pred EEEEeeCCCeEEEEeCC
Q 046899 303 VFGSSAEDGILNIWDHE 319 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~ 319 (407)
|+++...++.|.+|++.
T Consensus 306 l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 306 LYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCeEEEEEEe
Confidence 98888888999999875
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=6.8e-07 Score=85.63 Aligned_cols=180 Identities=13% Similarity=0.111 Sum_probs=132.5
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV 245 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l 245 (407)
.++.|+....+..+|..+.+..+...-....|.-++.+ + +++.+|...|+|.+-|.++.+ .+.++.+|.+.|..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDF 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCc--eeeeeeccccceeee
Confidence 34556666677778888877776665545456666654 3 689999999999999999888 788999999999877
Q ss_pred EecCCCCCEEEEEeC---------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 246 DWNPHDVNLILTGSA---------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 246 ~~~~~~~~~l~tg~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
+. .|+.|+++|. |..|+|||+|+ .+.+.-+.-+.++ .-++|+|.-...+|.++..|...+-
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRm------mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRM------MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhh------hhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 76 5688888875 44589999999 5666666655555 6788999876667888889999999
Q ss_pred eCCCCCcc----cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 317 DHEKIGEK----QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 317 d~~~~~~~----~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
|....... ..+...+..+..+++|++ ++.++-|..+|.|.+|.-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn------------------~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSN------------------GDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCC------------------CceEEEecccCcEeeecC
Confidence 94433322 112222333555666665 888999999999999973
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=7.3e-07 Score=78.81 Aligned_cols=218 Identities=13% Similarity=0.102 Sum_probs=146.8
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA 159 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
.-|.+.|+.+... -.+++.+++.||.++.|.-....-
T Consensus 6 ymhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isG----------------------------------------- 42 (558)
T KOG0882|consen 6 YMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISG----------------------------------------- 42 (558)
T ss_pred hcccceeeeEeee--hhheEEeeecchhhhhcCCCCccc-----------------------------------------
Confidence 3588888887533 567999999999999997542110
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCceeeeccc
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
-+.+..+..|...|.+++.+-++ .+++|.+. |..++++|+.+-.......+..-
T Consensus 43 ------------------------vEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 43 ------------------------VEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred ------------------------eeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 01223345688888999999988 88999787 99999999987663222222233
Q ss_pred CcceEEEEecCCCCC-EEEEE-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 239 NADIHCVDWNPHDVN-LILTG-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~-~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
++.+. ...++.+.. .++.+ -.+|.+.++|-+... .+....-.-|..+|.++.+.+-+... ++....|.|.-|
T Consensus 98 Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds~-vSiD~~gmVEyW 171 (558)
T KOG0882|consen 98 PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDF----CQDGYFKKLHFSPVKKIRYNQAGDSA-VSIDISGMVEYW 171 (558)
T ss_pred CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCc----CccceecccccCceEEEEeeccccce-eeccccceeEee
Confidence 33322 222331221 33333 457899999988732 24444555699999999999999865 588888999999
Q ss_pred eCCC-CCcccc--------------cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899 317 DHEK-IGEKQD--------------YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL 381 (407)
Q Consensus 317 d~~~-~~~~~~--------------~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~ 381 (407)
.... .+.+.. +.......+++.|||+ +..+.+.+.|-+||++++.
T Consensus 172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~------------------g~qistl~~DrkVR~F~~K-- 231 (558)
T KOG0882|consen 172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD------------------GAQISTLNPDRKVRGFVFK-- 231 (558)
T ss_pred cCCCcccCccccccccccccchhhcccccccCccceEEccc------------------cCcccccCcccEEEEEEec--
Confidence 9873 222221 1122333455556555 8889988899999999998
Q ss_pred ccCChHHHHHHHhh
Q 046899 382 IYRPEEEVLAELDK 395 (407)
Q Consensus 382 ~~~~~~~~~~~~~~ 395 (407)
++.+++.+..
T Consensus 232 ----tGklvqeiDE 241 (558)
T KOG0882|consen 232 ----TGKLVQEIDE 241 (558)
T ss_pred ----cchhhhhhhc
Confidence 7777776653
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.50 E-value=4.4e-05 Score=66.12 Aligned_cols=214 Identities=10% Similarity=0.031 Sum_probs=123.6
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc
Q 046899 88 RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN 167 (407)
Q Consensus 88 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (407)
++.|.+.++.++++--..+.|..|+..++... ++.+... .+..+. ..+..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------------------~~~~~~~--------~G~~~~---~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE------------------VIDLPGP--------NGMAFD---RPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE------------------EEESSSE--------EEEEEE---CTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE------------------EEecCCC--------ceEEEE---ccCCEE
Confidence 56788778888888888899999998765322 2222110 000000 000111
Q ss_pred ccccCCCCCCCCCCCCcCceeeEee-----cccCEEEEEECCCCCcEEEEEeCC--------CcEEEEEcCCCCCCceee
Q 046899 168 ASKSGGNGDKPLESPSIGARGKYLG-----HEDTVEDVQFCPSSAQEFCSVGDD--------SCLILWDARSGSTPAVKV 234 (407)
Q Consensus 168 ~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~ 234 (407)
..+ ..+.+.++|..+++....... .....+.+++.|+| ++.++.... |.|..++.. ++ ...
T Consensus 55 ~v~-~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~ 128 (246)
T PF08450_consen 55 YVA-DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTV 128 (246)
T ss_dssp EEE-ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEE
T ss_pred EEE-EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce---EEE
Confidence 111 223334446555544333332 34577899999999 677766543 456677766 33 223
Q ss_pred ecccCcceEEEEecCCCCCEEE-EEeCCCcEEEEeCCCCCC-CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899 235 EKAHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLTS-DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~ 312 (407)
....-...+.|+|+| +++.|+ +-+..+.|..|++..... ....+....+....+..-.+++..+|. |+++....+.
T Consensus 129 ~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~ 206 (246)
T PF08450_consen 129 VADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGR 206 (246)
T ss_dssp EEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTE
T ss_pred EecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCE
Confidence 333345578999999 777665 566778999999875220 000011222333233478999999998 6667777899
Q ss_pred EEEEeCCCCCcccccccCCCcccCCCC
Q 046899 313 LNIWDHEKIGEKQDYGELKYPIIHPAY 339 (407)
Q Consensus 313 i~vwd~~~~~~~~~~~~~~~~v~~~~~ 339 (407)
|.++|.+ ++.+..+.-....+++++|
T Consensus 207 I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 207 IVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred EEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 9999988 6766666544345556665
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=2.2e-06 Score=77.83 Aligned_cols=200 Identities=16% Similarity=0.167 Sum_probs=130.1
Q ss_pred cccccCccceEEEEeecccCcccCCcce-eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFV-KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA 125 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 125 (407)
.+.+++.|.++++|.... +.+..... -....-.|+.+|+++.|.. +-++++++ ||-|.+||.--+..+.....
T Consensus 749 SFiSASkDKTVKLWSik~--EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlWDPFigr~Laq~~d- 822 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKP--EGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLWDPFIGRLLAQMED- 822 (1034)
T ss_pred ceeeccCCceEEEEEecc--ccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceeecccccchhHhhhc-
Confidence 477889999999995441 11111111 1233346999999999988 66677766 78899999765543332110
Q ss_pred CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC
Q 046899 126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS 205 (407)
Q Consensus 126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~ 205 (407)
+.. .+-.+.|.|+.- -+
T Consensus 823 --------------apk------------------------------------------------~~a~~~ikcl~n-v~ 839 (1034)
T KOG4190|consen 823 --------------APK------------------------------------------------EGAGGNIKCLEN-VD 839 (1034)
T ss_pred --------------Ccc------------------------------------------------cCCCceeEeccc-Cc
Confidence 000 011223334321 12
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899 206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
..-+++.++...+|+++|.|.....+....- +...-+.+++..+ .|+.++.|-..|.|.+.|.|+ ++.+.
T Consensus 840 ~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~------G~vIN 912 (1034)
T KOG4190|consen 840 RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN------GKVIN 912 (1034)
T ss_pred chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC------Cceec
Confidence 3234444478899999999988743333322 3345688999999 999999999999999999999 88888
Q ss_pred eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE-EeCCCCCcc
Q 046899 283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI-WDHEKIGEK 324 (407)
Q Consensus 283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v-wd~~~~~~~ 324 (407)
.++..+-....++- |..+.+ +....|.++.+ |....+...
T Consensus 913 swrpmecdllqlaa-psdq~L-~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 913 SWRPMECDLLQLAA-PSDQAL-AQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred cCCcccchhhhhcC-chhHHH-HhhcccceeEeeehhcCCeee
Confidence 88765555555543 444434 67778999998 876654433
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=6.3e-06 Score=78.24 Aligned_cols=149 Identities=9% Similarity=0.162 Sum_probs=102.7
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV 245 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l 245 (407)
.++.|+..|.+.+.+.+..- .+...|... .-+| .++++|+.||+|.|..+-+.+. ... .....++.++
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~--~~~-~df~rpiksi 118 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE--ITQ-YDFKRPIKSI 118 (846)
T ss_pred eeeeccccceEEEEecCCcc--ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc--cee-EecCCcceeE
Confidence 35667777777776654322 222233332 4456 8999999999999999988772 222 3457889999
Q ss_pred EecCC----CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 246 DWNPH----DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 246 ~~~~~----~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
+++|+ ..+.+++|+.-| +.++.-+-... ...+ .+..-.++|.++.|. |. ++|-++.+| |+|||+...
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---k~~v-~l~~~eG~I~~i~W~--g~-lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---KDSV-VLSEGEGPIHSIKWR--GN-LIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcC---ccce-eeecCccceEEEEec--Cc-EEEEecCCC-cEEEecccc
Confidence 99993 257899999999 77877655321 1222 455568899999995 44 567777666 999999998
Q ss_pred CcccccccCCCccc
Q 046899 322 GEKQDYGELKYPII 335 (407)
Q Consensus 322 ~~~~~~~~~~~~v~ 335 (407)
+.+..++.....+.
T Consensus 190 ~~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 190 QRLTNIPPPSQSVR 203 (846)
T ss_pred ceeeccCCCCCCCC
Confidence 88877766554433
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=3.6e-07 Score=87.18 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=132.7
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC----CCcEEEEeccccccccccCCCCCc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----DQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
.|...-+|++|+. +.+.|+.|+..|.|+++++.++.....+.+|...+..+ ||...+-.-
T Consensus 1099 d~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltss--------------- 1162 (1516)
T KOG1832|consen 1099 DETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSS--------------- 1162 (1516)
T ss_pred ccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeec---------------
Confidence 5788899999998 88899999999999999999999888888887665433 444333211
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV- 234 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 234 (407)
..+.--..+|++.. +...+.+. .-.++.|+..- ..-+.|.......+||+++... ..+
T Consensus 1163 -------------s~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~--l~ty 1222 (1516)
T KOG1832|consen 1163 -------------SSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSP--LQTY 1222 (1516)
T ss_pred -------------cccCchHHHhccccccCcccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcH--HHHh
Confidence 11111234666643 33444443 34578888764 4445555667899999999873 222
Q ss_pred ec---ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 235 EK---AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 235 ~~---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
+. +....-++..|+| +..+++ .|| .+||+|. .+.++.|...+..+ .-.|||+|..++ .-+
T Consensus 1223 lt~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~------~~aIh~FD~ft~~~-~G~FHP~g~eVI-INS--- 1285 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRI------PEAIHRFDQFTDYG-GGGFHPSGNEVI-INS--- 1285 (1516)
T ss_pred cCcchhhhhhccccccCC-CcceEe---eCc--eeeeecc------HHHHhhhhhheecc-cccccCCCceEE-eec---
Confidence 21 2222337889999 666665 466 5899998 66777776544322 335999999775 433
Q ss_pred eEEEEeCCCCCcccccccCCC
Q 046899 312 ILNIWDHEKIGEKQDYGELKY 332 (407)
Q Consensus 312 ~i~vwd~~~~~~~~~~~~~~~ 332 (407)
.|||+++.+.+...+.-+.
T Consensus 1286 --EIwD~RTF~lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1286 --EIWDMRTFKLLHSVPSLDQ 1304 (1516)
T ss_pred --hhhhhHHHHHHhcCccccc
Confidence 3899999998887765443
No 299
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=4.1e-05 Score=66.40 Aligned_cols=166 Identities=9% Similarity=0.141 Sum_probs=109.8
Q ss_pred ecccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCC--CCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-CcEE
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARS--GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-NSIH 265 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-g~i~ 265 (407)
...+..+-|+|+|++ +.|.++.. +|.|.-|.+.. +....+-.......+.+.+++++ ++++++++... |.|.
T Consensus 37 ~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEE
Confidence 355677889999998 66777655 47788887765 44212222222334447899999 88999888764 7999
Q ss_pred EEeCCCCCCCCCCCceeeecCCCCC----------EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc---cCCC
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHSAA----------VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG---ELKY 332 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~~~----------v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~---~~~~ 332 (407)
++-++.... ...+.....|.+. +....+.|++++|+++.=.-..|.+|++..++....-. ..+.
T Consensus 115 v~p~~~dG~---l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 115 VYPLQADGS---LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred EEEcccCCc---cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 999977422 2222222235444 88999999999887555455679999999654432211 2334
Q ss_pred cccCCCCcCcchhccccceeeeeEeeCccce-eeeEEEeeeEEEeeccc
Q 046899 333 PIIHPAYSSDMLDIETKLLTSIGMHLIHGRL-LVCLTMVKVLEIWRMID 380 (407)
Q Consensus 333 ~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~i~iwd~~~ 380 (407)
.-..+.|.|+ +.. .+..-++++|-+|..+.
T Consensus 192 GPRHi~FHpn------------------~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 192 GPRHIVFHPN------------------GKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred CcceEEEcCC------------------CcEEEEEeccCCEEEEEEEcC
Confidence 4567778777 443 33667888999999874
No 300
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.44 E-value=1.1e-07 Score=87.53 Aligned_cols=195 Identities=13% Similarity=0.175 Sum_probs=125.0
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEee----CCCcEEEEeCcCCCCcccc
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHT----DSPDVLIWDVEAQPNRHAV 122 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~----~dg~i~vwd~~~~~~~~~~ 122 (407)
.++.|..+|.+-+..-. ...+. ......+|...+++++|++-+.+.||.|- .|..+.|||+.++-....
T Consensus 72 IlavG~atG~I~l~s~r---~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk- 144 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVR---HPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK- 144 (783)
T ss_pred hhhhccccCceEEeecC---Ccccc---cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc-
Confidence 46666777766665222 11111 12334468899999999998888888883 245566777665421100
Q ss_pred cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEE
Q 046899 123 LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQF 202 (407)
Q Consensus 123 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 202 (407)
.. ...++ +-.....+++|
T Consensus 145 ------------------------------e~-----------~~fs~---------------------~~l~gqns~cw 162 (783)
T KOG1008|consen 145 ------------------------------ES-----------PLFSS---------------------STLDGQNSVCW 162 (783)
T ss_pred ------------------------------cc-----------ccccc---------------------ccccCcccccc
Confidence 00 00000 01223347888
Q ss_pred CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEe-CCCCCCCCCCCce
Q 046899 203 CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD-RRKLTSDGVGSPI 281 (407)
Q Consensus 203 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd-~~~~~~~~~~~~~ 281 (407)
..+. .++.+|.....++++|+|... .....-.+..+..+..+|..++++++-. ||.|.+|| .++. ..++
T Consensus 163 lrd~-klvlaGm~sr~~~ifdlRqs~---~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni-----enpl 232 (783)
T KOG1008|consen 163 LRDT-KLVLAGMTSRSVHIFDLRQSL---DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI-----ENPL 232 (783)
T ss_pred ccCc-chhhcccccchhhhhhhhhhh---hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh-----ccHH
Confidence 8776 789999999999999999544 2222233445667788887788887765 99999999 5442 2444
Q ss_pred eeecCCCC----CEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCC
Q 046899 282 HKFEGHSA----AVLCVQWSPDKSSVFGSSAED-GILNIWDHEK 320 (407)
Q Consensus 282 ~~~~~h~~----~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~ 320 (407)
..+...+. .+..++|.|....++++...| ++|+++|+..
T Consensus 233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 44443222 499999999877777787765 7899999874
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.44 E-value=2.1e-06 Score=82.37 Aligned_cols=145 Identities=11% Similarity=0.179 Sum_probs=110.3
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCCCceeee
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---------DSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~ 235 (407)
..+.+|...|++.+-|.++.+.+.++..|++.|..+... | ++|+++|. |..|++||+|..+ .+..+
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr--al~PI 262 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR--ALSPI 262 (1118)
T ss_pred cEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhh--ccCCc
Confidence 457889999999999999999999999999999877654 5 78888875 6678999999877 34444
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
.-+.++ .-+.|.|.-...+++.+..|...+-|..+.... ..-+..+..-...+..+.+++++.. +|-|..+|.|.+
T Consensus 263 ~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd~~g~v~~ 338 (1118)
T KOG1275|consen 263 QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNGDA-LAFGDHEGHVNL 338 (1118)
T ss_pred ccccCc-hhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecCCCce-EEEecccCcEee
Confidence 334333 567888866778899999999999994433210 1222333333456999999999995 589999999999
Q ss_pred EeC
Q 046899 316 WDH 318 (407)
Q Consensus 316 wd~ 318 (407)
|--
T Consensus 339 wa~ 341 (1118)
T KOG1275|consen 339 WAD 341 (1118)
T ss_pred ecC
Confidence 973
No 302
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.40 E-value=2.6e-05 Score=69.77 Aligned_cols=124 Identities=16% Similarity=0.229 Sum_probs=89.8
Q ss_pred cccCCC-CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEe
Q 046899 169 SKSGGN-GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDW 247 (407)
Q Consensus 169 ~~~~~~-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 247 (407)
.+..|| .+-++|...++ +..+.+.-+.|.+++.+|+| ..++.+.....|.+.|+.++. ....-+...+-|+.++|
T Consensus 376 igt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn--v~~idkS~~~lItdf~~ 451 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN--VRLIDKSEYGLITDFDW 451 (668)
T ss_pred EeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC--eeEecccccceeEEEEE
Confidence 344444 45555555544 34445567889999999999 788888888899999999998 44444555678999999
Q ss_pred cCCCCCEEEEEeCCC----cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899 248 NPHDVNLILTGSADN----SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF 304 (407)
Q Consensus 248 ~~~~~~~l~tg~~dg----~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll 304 (407)
+| +++++|-+--+| .|+++|+.. ++. .......+.=.+-+|.|++++|.
T Consensus 452 ~~-nsr~iAYafP~gy~tq~Iklydm~~------~Ki-y~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 452 HP-NSRWIAYAFPEGYYTQSIKLYDMDG------GKI-YDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred cC-CceeEEEecCcceeeeeEEEEecCC------CeE-EEecCCcccccCcccCCCCcEEE
Confidence 99 999999887666 689999987 443 33333333445667889998874
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2e-05 Score=69.09 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=63.3
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
..+|...|..|+|+|.+.-++..++-+..|+|.|+.+..+..
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs-------------------------------------- 230 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS-------------------------------------- 230 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeee--------------------------------------
Confidence 345788999999999666689999999999999998764332
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS 228 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 228 (407)
.+..+ ..+++++|.-+..+++..|-..|.|.+||+|..+
T Consensus 231 ------------------------------sy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 231 ------------------------------SYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ------------------------------heecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 22334 5678888888777788888888888888888765
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=4.9e-06 Score=77.89 Aligned_cols=265 Identities=13% Similarity=0.186 Sum_probs=163.6
Q ss_pred EEEee---cccccCccceEEEEeec-ccCccc------CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 42 CRWGP---QLEQATYKNRQRLYLSE-QFNEEA------RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 42 ~~~~~---~~~~~~~~~~~~i~~~~-~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
..|.. .++.|+.|+..++.-.. +-.+.+ .......+.+-||.+.|.-+.|+. +.+.|.|...+|.|.||
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVW 98 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCCceEEEE
Confidence 46654 47888888877776322 111111 111222345568999999999998 66778899999999999
Q ss_pred eCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe
Q 046899 112 DVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL 191 (407)
Q Consensus 112 d~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 191 (407)
=+-.+.-...... .
T Consensus 99 mlykgsW~EEMiN------------------------------------------------------------------n 112 (1189)
T KOG2041|consen 99 MLYKGSWCEEMIN------------------------------------------------------------------N 112 (1189)
T ss_pred eeecccHHHHHhh------------------------------------------------------------------C
Confidence 8876643322110 0
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
-...-|.+++|+.+| ..++..-.||.|.+=.+.-.+ +.-..--......+.|++ |...++.+-..|.+.+||.+.
T Consensus 113 RnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 113 RNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred cCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce---ecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccc
Confidence 123567899999999 778888889998887776433 211111122344789999 888888888899999999764
Q ss_pred CCCCCC-CCceee----ecCCCCCEEEEEEc--------CCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899 272 LTSDGV-GSPIHK----FEGHSAAVLCVQWS--------PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPA 338 (407)
Q Consensus 272 ~~~~~~-~~~~~~----~~~h~~~v~~v~~~--------~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 338 (407)
...-.. ..+.-. +......|..+.|. |+.+. ||.+-..|.+.+-.-.+...+..+.. +..+.+..
T Consensus 188 nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~-lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgak 265 (1189)
T KOG2041|consen 188 NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR-LAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAK 265 (1189)
T ss_pred cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-EEEEEcCceehhhhhcCCCCCeEEec-ccEeecce
Confidence 210000 011001 11111224455553 46664 57888888888765544333333332 35677778
Q ss_pred CcCcchhccccceeeeeEeeCccceeeeEEEee---------eEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899 339 YSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---------VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 339 ~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 405 (407)
|+++ +..++.++.+. .|++|.. -|..+..++..-..|++++|
T Consensus 266 Wnh~------------------G~vLAvcG~~~da~~~~d~n~v~Fysp-------~G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 266 WNHN------------------GAVLAVCGNDSDADEPTDSNKVHFYSP-------YGHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred ecCC------------------CcEEEEccCcccccCccccceEEEecc-------chhheEEEecCCceeeeeEE
Confidence 8777 55555444443 6677665 47777777777777777776
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=5.5e-05 Score=72.59 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=90.0
Q ss_pred EEEEEECCCCCcEEEEEeCCCc-----EEEEEcCCCC--C-C-ce--eeecc-----cCcceEEEEecCCCCCEEEEEeC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSC-----LILWDARSGS--T-P-AV--KVEKA-----HNADIHCVDWNPHDVNLILTGSA 260 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~--~-~-~~--~~~~~-----~~~~v~~l~~~~~~~~~l~tg~~ 260 (407)
|..+....+. ++|++.++|+. |++||++... . | +. ..... ...++.+++.+. +-..+|+|-.
T Consensus 68 v~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~ 145 (933)
T KOG2114|consen 68 VQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFT 145 (933)
T ss_pred hhHhhcccCc-eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEec
Confidence 3333333333 67777777654 8999997542 1 2 22 11222 346788899988 7889999999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC-EEEEeeCCCeEEEEeCCCCCc-ccccccCCCcccCCC
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGILNIWDHEKIGE-KQDYGELKYPIIHPA 338 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~ 338 (407)
+|.|..+.-.-.... +....-......+|+.+++..++.. +||+. -..|.+|.+..... ...+..++.++.+..
T Consensus 146 nG~V~~~~GDi~RDr--gsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss 221 (933)
T KOG2114|consen 146 NGLVICYKGDILRDR--GSRQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSS 221 (933)
T ss_pred CcEEEEEcCcchhcc--ccceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeee
Confidence 999999865432221 1111112224679999999999886 44333 46799999995442 344677888888888
Q ss_pred CcCc
Q 046899 339 YSSD 342 (407)
Q Consensus 339 ~s~d 342 (407)
|++.
T Consensus 222 ~~~~ 225 (933)
T KOG2114|consen 222 FSDG 225 (933)
T ss_pred cCCC
Confidence 8665
No 306
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.29 E-value=0.00011 Score=65.96 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=78.1
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-------CCCCEEEEEEcCCCCCEEEEe-e--------CCC
Q 046899 248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-------HSAAVLCVQWSPDKSSVFGSS-A--------EDG 311 (407)
Q Consensus 248 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~ll~s~-~--------~d~ 311 (407)
.+.++.++.+... |.|.+.|+....... .++...+.. ..+.+.-++++|+++++++.. + ..+
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCccee-cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 3435666666554 999999965421100 223332221 223445599999999988643 1 226
Q ss_pred eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc-eeeeEE-EeeeEEEeeccccccCChHHH
Q 046899 312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR-LLVCLT-MVKVLEIWRMIDLIYRPEEEV 389 (407)
Q Consensus 312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~-~d~~i~iwd~~~~~~~~~~~~ 389 (407)
.|.++|+.+.+.+..+.. ...+.++++|+| +. .+++.+ .++.|.|.|.. +++.
T Consensus 280 ~V~ViD~~t~kvi~~i~v-G~~~~~iavS~D------------------gkp~lyvtn~~s~~VsViD~~------t~k~ 334 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIEL-GHEIDSINVSQD------------------AKPLLYALSTGDKTLYIFDAE------TGKE 334 (352)
T ss_pred EEEEEECCCCeEEEEEeC-CCceeeEEECCC------------------CCeEEEEeCCCCCcEEEEECc------CCeE
Confidence 899999999888887765 446778999998 55 555554 57789999998 5666
Q ss_pred HHHH
Q 046899 390 LAEL 393 (407)
Q Consensus 390 ~~~~ 393 (407)
++.+
T Consensus 335 i~~i 338 (352)
T TIGR02658 335 LSSV 338 (352)
T ss_pred Eeee
Confidence 6555
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.29 E-value=5.5e-05 Score=63.66 Aligned_cols=184 Identities=11% Similarity=0.113 Sum_probs=105.3
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee------cccCcceEEEEecCCC-----CCEEEEEeCCCcE
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE------KAHNADIHCVDWNPHD-----VNLILTGSADNSI 264 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~v~~l~~~~~~-----~~~l~tg~~dg~i 264 (407)
.=..++|+|++ .+||.+...|+|++||+.... +.... ..-...|..+.|-+.. ...|++-..+|.+
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~--lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE--LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccce--eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 44679999999 899999999999999997543 11111 1123466677775422 2356677788888
Q ss_pred EEEeCCCCCCCCCCCceeeec--C-CCCCEEEEEEcCCCCCEEEEeeCCCe----------EEEEeCCCCCcccc-cccC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFE--G-HSAAVLCVQWSPDKSSVFGSSAEDGI----------LNIWDHEKIGEKQD-YGEL 330 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~--~-h~~~v~~v~~~~~~~~ll~s~~~d~~----------i~vwd~~~~~~~~~-~~~~ 330 (407)
+=|-+.... +...+...++. . +...|.++.++|..+.|++.|..... +..|-+-+....-. ....
T Consensus 122 ~Sy~vs~gt-~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~ 200 (282)
T PF15492_consen 122 RSYLVSVGT-NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSS 200 (282)
T ss_pred eeEEEEccc-CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcccc
Confidence 877753210 00033334433 2 46689999999998877766655433 45565544322211 1111
Q ss_pred CCcccCCCCcCcchhccc----------cceeeeeEeeCccceeeeEEEeeeEEEeecccccc
Q 046899 331 KYPIIHPAYSSDMLDIET----------KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY 383 (407)
Q Consensus 331 ~~~v~~~~~s~d~~~~~~----------~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~ 383 (407)
...+....-...++.+.+ ....-.+.+++.+..+++...+|.|.+|++.....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 111111100000111110 00111345666688999999999999999985443
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.00013 Score=67.54 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=69.7
Q ss_pred CcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccc
Q 046899 66 NEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHV 145 (407)
Q Consensus 66 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~ 145 (407)
+...+......+..+.....|.+.+++| +.+.|+.|+.||+|.+||...+...
T Consensus 242 E~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~-------------------------- 294 (545)
T PF11768_consen 242 ECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL-------------------------- 294 (545)
T ss_pred EeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee--------------------------
Confidence 3333344455667778999999999999 7788999999999999998754211
Q ss_pred cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899 146 SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR 225 (407)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 225 (407)
+....-..+.++|||+| .+|++|+..|.+.+||+.
T Consensus 295 --------------------------------------------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 295 --------------------------------------------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred --------------------------------------------eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence 11122346789999999 899999999999999997
Q ss_pred CCC
Q 046899 226 SGS 228 (407)
Q Consensus 226 ~~~ 228 (407)
-..
T Consensus 330 Lsp 332 (545)
T PF11768_consen 330 LSP 332 (545)
T ss_pred cCc
Confidence 554
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=3.3e-05 Score=71.35 Aligned_cols=115 Identities=17% Similarity=0.337 Sum_probs=82.9
Q ss_pred CEEEEEECCCCCcEEEEEe----CCCc----EEEEEcCCCCCC-ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 196 TVEDVQFCPSSAQEFCSVG----DDSC----LILWDARSGSTP-AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~----~dg~----i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
...++.|+-..++.+.+.. .+|. -++|++...+.. ...+....+..|.+.+++| +...++.|+.||+|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 3467788775556666543 2343 356777654421 1223336778999999999 8899999999999999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
||... + +..+....-..+.++|||+|. ++++|+..|.+.+||+.-
T Consensus 286 yD~~~------~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTTR------G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCC------C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeec
Confidence 99986 3 223333456689999999999 557999999999999864
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00017 Score=67.20 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=82.9
Q ss_pred CEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE-EEeCC--CcEEEEeC
Q 046899 196 TVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSAD--NSIHMFDR 269 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-tg~~d--g~i~vwd~ 269 (407)
.+..-.|+|+|..+++..+. +..|.++|+.+++. ..+....+......|+| |++.++ +.+.+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---EKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---EEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEEC
Confidence 67789999999443443333 35699999988772 22223455566788999 776554 44434 46777787
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.. ++ ...+..+........|+|||+.|+.+....+ .|.+.|+..++..+.... .. ....||||
T Consensus 265 ~~------g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPD 329 (419)
T PRK04043 265 NT------KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTY 329 (419)
T ss_pred CC------Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCC
Confidence 65 33 4445444433445689999998866654444 688888877655332221 11 13478888
No 311
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.20 E-value=0.00036 Score=63.27 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=133.8
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc----CCCCCCC-----------------------CC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA----ADSHPDL-----------------------DQ 134 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~-----------------------d~ 134 (407)
..-++..++|+| .|.+|++.... .|.+|.......+..+... ....|.. +.
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecC-cchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 456788999999 89999887764 6888887654322111100 0000000 45
Q ss_pred cEEEEeccccccccccCCCCCc-----ccccCCCCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCC-
Q 046899 135 SVVLWSIQDHVSALAAEPGSAK-----STASGGANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSA- 207 (407)
Q Consensus 135 ~i~~w~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~- 207 (407)
.+.+||..++.....+..-... +......+. +++.-....+.++++...-....+.. ....|....|+|.+.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~-y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK-YVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecch-hhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence 7999999887543332221111 111222222 22222445566666411111111111 125678888998742
Q ss_pred cEEEE-----EeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-----------CCCcEEEEeCCC
Q 046899 208 QEFCS-----VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-----------ADNSIHMFDRRK 271 (407)
Q Consensus 208 ~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-----------~dg~i~vwd~~~ 271 (407)
..|+. .+..+++++|.+..........+. ...-..+.|++ .+++++.-- ....+++++++.
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 22333 356788999999865522222222 22234688888 566554321 124577888775
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCE-EEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV-FGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
..+.....-.++|...+|.|.++.. +++|-.+..+.++|++.. ....+ ..++-..+.|||.
T Consensus 265 -------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~ 326 (561)
T COG5354 265 -------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPH 326 (561)
T ss_pred -------cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCc
Confidence 2222222557899999999988754 234457899999999975 22222 2333345666665
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=5.2e-06 Score=79.59 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=109.9
Q ss_pred cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC-
Q 046899 184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN- 262 (407)
Q Consensus 184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg- 262 (407)
.+....+..|+...+|++|+-.. +.|+.|+..|.|++|++.++. .......|+++|+-+.-+. ++..+++.+.-.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--ccccccccccccccccccC-CcceeeeeccccC
Confidence 34556677788999999999987 899999999999999999998 5667789999999999988 777766655443
Q ss_pred -cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc----CCCcccCC
Q 046899 263 -SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE----LKYPIIHP 337 (407)
Q Consensus 263 -~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~ 337 (407)
...+|++... +.+.++|.+ -.++.|+.....- +.|.......+||+.++..++++.. ....-..+
T Consensus 1167 PlsaLW~~~s~-----~~~~Hsf~e----d~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1167 PLSALWDASST-----GGPRHSFDE----DKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred chHHHhccccc-----cCccccccc----cceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 4679998863 567777764 3568888764433 2444456788999999988887432 23334567
Q ss_pred CCcCc
Q 046899 338 AYSSD 342 (407)
Q Consensus 338 ~~s~d 342 (407)
.|||+
T Consensus 1237 ~FsP~ 1241 (1516)
T KOG1832|consen 1237 HFSPC 1241 (1516)
T ss_pred ccCCC
Confidence 89887
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.2e-05 Score=71.37 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=134.7
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCcccccCc
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVLGA 125 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~ 125 (407)
.+.+++.|+..++|-.+ ........+ ....|-+.|.+++.+- ++-++.|++. |..++++|+..-....-
T Consensus 22 fiiqASlDGh~KFWkKs---~isGvEfVK--hFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~Dminm---- 91 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKS---RISGVEFVK--HFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINM---- 91 (558)
T ss_pred eEEeeecchhhhhcCCC---Cccceeehh--hhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhh----
Confidence 36688899999999111 001111111 1224778888888655 8989999777 99999999875422110
Q ss_pred CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC
Q 046899 126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS 205 (407)
Q Consensus 126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~ 205 (407)
+++.++. +.+ ++-.+|.
T Consensus 92 ----------iKL~~lP----------------------------------------------------g~a-~wv~skG 108 (558)
T KOG0882|consen 92 ----------IKLVDLP----------------------------------------------------GFA-EWVTSKG 108 (558)
T ss_pred ----------cccccCC----------------------------------------------------Cce-EEecCCC
Confidence 0111110 111 1111221
Q ss_pred CC--cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCc---
Q 046899 206 SA--QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP--- 280 (407)
Q Consensus 206 ~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~--- 280 (407)
.. .+-++.-.++.+.++|-+....+......-|..+|.++.+++ -+..+++....|.|..|....+-.-...+.
T Consensus 109 d~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~ 187 (558)
T KOG0882|consen 109 DKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE 187 (558)
T ss_pred CeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCcccccccc
Confidence 11 122333457899999988766555556678999999999999 888899999999999998873110000111
Q ss_pred ------eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 281 ------IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 281 ------~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
+..+........++.|+|++..+ ++-+.|..|+++++++++.++.++.
T Consensus 188 ~K~eTdLy~f~K~Kt~pts~Efsp~g~qi-stl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 188 LKHETDLYGFPKAKTEPTSFEFSPDGAQI-STLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccchhhcccccccCccceEEccccCcc-cccCcccEEEEEEeccchhhhhhhc
Confidence 12222245678999999999976 7888999999999999988887654
No 314
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.15 E-value=0.00028 Score=65.79 Aligned_cols=245 Identities=11% Similarity=0.007 Sum_probs=131.9
Q ss_pred eEEEEeeCCCcEEEEeCcCCCCcccccCcCC--CCC----------CCCCcEEEEeccccccccccCCCCCc------cc
Q 046899 97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAAD--SHP----------DLDQSVVLWSIQDHVSALAAEPGSAK------ST 158 (407)
Q Consensus 97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~--~~~----------~~d~~i~~w~~~~~~~~~~~~~~~~~------~~ 158 (407)
..++.++.+|.+..+|..+++.+-....... ..| ..++.+..+|..++............ ..
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~s 200 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESA 200 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCC
Confidence 3556677889999999998876543322111 111 11566777777666443322211100 00
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc-------CEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED-------TVEDVQFCP--SSAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-------~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
+. .....+..+..++.+..+|..+++.+-....... ....+.-+| .+ ..++.++.+|.+..+|..+++
T Consensus 201 P~-v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~- 277 (394)
T PRK11138 201 PA-TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQ- 277 (394)
T ss_pred CE-EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCC-
Confidence 00 0011234455666666666666665433221000 011111122 13 356667789999999999987
Q ss_pred CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-CCEEEEEEcCCCCCEEEEee
Q 046899 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~ll~s~~ 308 (407)
....... .. ...+.. .+..++.++.+|.+..+|..+ ++.+.....-. ....+.... ++ ++ ..++
T Consensus 278 -~~W~~~~-~~-~~~~~~---~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~~~~~~~~sp~v~-~g-~l-~v~~ 342 (394)
T PRK11138 278 -IVWKREY-GS-VNDFAV---DGGRIYLVDQNDRVYALDTRG------GVELWSQSDLLHRLLTAPVLY-NG-YL-VVGD 342 (394)
T ss_pred -EEEeecC-CC-ccCcEE---ECCEEEEEcCCCeEEEEECCC------CcEEEcccccCCCcccCCEEE-CC-EE-EEEe
Confidence 3333211 11 112222 345677778899999999988 66654432111 111222222 33 35 4788
Q ss_pred CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 309 EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 309 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
.||.+.+.|..+++.+-...-....+.. +| .. .++.|+.++.||.|+.++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s---~P-------------~~---~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLS---EP-------------VV---ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccee---CC-------------EE---ECCEEEEEeCCceEEEEeC
Confidence 8999999999998776555432222211 11 11 1557888899998887764
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=2.8e-06 Score=78.62 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=118.5
Q ss_pred ccCEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe----CCCcEEEEe
Q 046899 194 EDTVEDVQFCPSS-AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS----ADNSIHMFD 268 (407)
Q Consensus 194 ~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~----~dg~i~vwd 268 (407)
...+.|+++.-.. ..+++.|..+|.|-+-.++...-........+..+.++++|++.|.+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4456777765433 25899999999999999987664333445678889999999998888898884 356899999
Q ss_pred CCCCCCCCCCCcee--eecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchh
Q 046899 269 RRKLTSDGVGSPIH--KFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLD 345 (407)
Q Consensus 269 ~~~~~~~~~~~~~~--~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 345 (407)
+.+.-. .|.. .|.+ ......+++|..+.+.+ .+|.....++++|++.. ..+...-....+.++..+|-
T Consensus 136 i~s~lt----vPke~~~fs~~~l~gqns~cwlrd~klv-laGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~--- 206 (783)
T KOG1008|consen 136 INSLLT----VPKESPLFSSSTLDGQNSVCWLRDTKLV-LAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPF--- 206 (783)
T ss_pred cccccC----CCccccccccccccCccccccccCcchh-hcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCC---
Confidence 987311 1111 1221 33456688999777754 58888889999999942 22222222222333333331
Q ss_pred ccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccc----eeEeeccC
Q 046899 346 IETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSH----IFGCDKSC 407 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~~~~s~ 407 (407)
..+++++- .||.|-+||.. +.-..++..+..-.+. +..++|+|
T Consensus 207 --------------~~nY~cs~-~dg~iAiwD~~----rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 207 --------------SPNYFCSN-SDGDIAIWDTY----RNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred --------------CCCceecc-ccCceeeccch----hhhccHHHHHhhCCCCcccceeeEEecc
Confidence 13344444 49999999942 1134555555544443 88888875
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.07 E-value=0.0013 Score=66.02 Aligned_cols=117 Identities=16% Similarity=0.350 Sum_probs=77.1
Q ss_pred EEEEECCCCCcEEEEEe----CC-CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE---eCCCcEEEEeC
Q 046899 198 EDVQFCPSSAQEFCSVG----DD-SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG---SADNSIHMFDR 269 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg---~~dg~i~vwd~ 269 (407)
..|.|--+| .+||+.. .+ ..|++||-+ +. ....-....+.-.+++|-| .|..+++- +.|+.|.+|..
T Consensus 199 ~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 199 TSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred ceEEEccCC-cEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEec
Confidence 468999988 7888732 24 799999976 44 2222222233346799999 88888875 34567999986
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE---eeCCCeEEEEeCCCCCc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGILNIWDHEKIGE 323 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s---~~~d~~i~vwd~~~~~~ 323 (407)
+-... +.-...+......|..++|+.++. +||. ......|++|-+.+..-
T Consensus 274 NGL~h---g~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 274 NGLRH---GEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CCccc---cccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEE
Confidence 64322 222223333344599999999998 5565 45555699999987543
No 317
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.06 E-value=0.00036 Score=71.20 Aligned_cols=156 Identities=15% Similarity=0.253 Sum_probs=96.5
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC----C---------CC-CC-------ceeeec----------------
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR----S---------GS-TP-------AVKVEK---------------- 236 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~---------~~-~~-------~~~~~~---------------- 236 (407)
...|.+++|+||+ .+|+..+.+++|.+.+-. . +. .+ ....+.
T Consensus 120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 4579999999999 678888778887765321 0 00 00 000000
Q ss_pred --------ccCcceEEEEecCCCCCEEEEEeC---C---CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899 237 --------AHNADIHCVDWNPHDVNLILTGSA---D---NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 237 --------~~~~~v~~l~~~~~~~~~l~tg~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 302 (407)
.+...-..|+|-. ||.+||+.+. . ..+|||+.+ +....+-..-.+--.+++|.|.|.
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-------G~L~stSE~v~gLe~~l~WrPsG~- 269 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-------GELQSTSEPVDGLEGALSWRPSGN- 269 (928)
T ss_pred CccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-------ceEEeccccCCCccCCccCCCCCC-
Confidence 0223445789988 9999998875 2 479999876 444444443344456789999999
Q ss_pred EEEEeeC---CCeEEEEeCCCCCccccc----ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEE
Q 046899 303 VFGSSAE---DGILNIWDHEKIGEKQDY----GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEI 375 (407)
Q Consensus 303 ll~s~~~---d~~i~vwd~~~~~~~~~~----~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~i 375 (407)
++|+.-. ...|.+|.-+ +-+...| ......|..+.|++| +..++....| .|++
T Consensus 270 lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~d------------------s~iLAv~~~~-~vqL 329 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSD------------------SEILAVWLED-RVQL 329 (928)
T ss_pred EEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCC------------------CCEEEEEecC-CceE
Confidence 5566653 3567777633 3222222 234566788888887 5556655544 4888
Q ss_pred eecc
Q 046899 376 WRMI 379 (407)
Q Consensus 376 wd~~ 379 (407)
|-..
T Consensus 330 Wt~~ 333 (928)
T PF04762_consen 330 WTRS 333 (928)
T ss_pred EEee
Confidence 8764
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=1.3e-05 Score=76.13 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=107.3
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
...+.|++++. ..|+-|+.+|.|++++..- . . .+...|... +- +|.++++|+.||+|.|..+-+
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~--~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~-- 102 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-N--P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFT-- 102 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCC-c--c-ccccccccc------cc-CCceEEEecCCCcEEEeeccC--
Confidence 35667777764 6799999999999999763 3 1 233344433 44 899999999999999999888
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCC-----CCCEEEEeeCCCeEEEEeCCCCCcccc--cccCCCcccCCCCcCcchhc
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPD-----KSSVFGSSAEDGILNIWDHEKIGEKQD--YGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~ll~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~~ 346 (407)
.+...++. ...++.+|+++|+ .++ +++||.-| +.++.-+-.+.... .....++|.++.|
T Consensus 103 ----~~~~~~~d-f~rpiksial~Pd~~~~~sk~-fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W------- 168 (846)
T KOG2066|consen 103 ----DDEITQYD-FKRPIKSIALHPDFSRQQSKQ-FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW------- 168 (846)
T ss_pred ----CccceeEe-cCCcceeEEeccchhhhhhhh-eeecCcce-EEEehhhhhcCccceeeecCccceEEEEe-------
Confidence 44444444 3468999999998 333 56999888 87887554444332 3455677777776
Q ss_pred cccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhh
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK 395 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 395 (407)
.+.+++|..|-.|+|||.. +++.+..++.
T Consensus 169 --------------~g~lIAWand~Gv~vyd~~------~~~~l~~i~~ 197 (846)
T KOG2066|consen 169 --------------RGNLIAWANDDGVKVYDTP------TRQRLTNIPP 197 (846)
T ss_pred --------------cCcEEEEecCCCcEEEecc------ccceeeccCC
Confidence 3446778888899999998 5555554443
No 319
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.00 E-value=0.00015 Score=71.33 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=98.6
Q ss_pred cCCCCCCCCCCCCcCceeeEeecccC-EEEEEECCC----CCcEEEEEeCCCcEEEEEcCCCCCCceee---ecccCcce
Q 046899 171 SGGNGDKPLESPSIGARGKYLGHEDT-VEDVQFCPS----SAQEFCSVGDDSCLILWDARSGSTPAVKV---EKAHNADI 242 (407)
Q Consensus 171 ~~~~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v 242 (407)
.....+.-.|+..++.+..+..+... |..++-... .+..-+.|-.+..+..||.|-....++.. ........
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 35567777899999999999877654 666653211 11335567778999999999754222211 11234456
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
.|++-+. ..+||+|+.+|.||+||--. ......|.+-..+|..|..+.||++||||| +..+.|+++.
T Consensus 581 s~~aTt~--~G~iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTE--DGYIAVGSNKGDIRLYDRLG------KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred eEEEecC--CceEEEEeCCCcEEeecccc------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 7777664 45899999999999999432 234445667789999999999999998777 6789999864
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.00 E-value=0.003 Score=54.70 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=77.9
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc--ee---eecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA--VK---VEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~---~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
..-...+.|+|+|++..++++-+..+.|..+++....... .. .+....+..-.++++. ++++.++....+.|.+
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVV 209 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEE
T ss_pred cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEE
Confidence 3445678999999995556677888999999997544201 11 1112223477899999 8898888888899999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEE-cCCCCCEEEEee
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQW-SPDKSSVFGSSA 308 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~ll~s~~ 308 (407)
+|.+ ++.+..+......+++++| -++...|++|.+
T Consensus 210 ~~p~-------G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 210 FDPD-------GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EETT-------SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ECCC-------ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 9987 5778877766568999999 477777887764
No 321
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.001 Score=61.14 Aligned_cols=261 Identities=15% Similarity=0.227 Sum_probs=141.9
Q ss_pred EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC----cCCCCCCC-------------------CCcEEEEeccc
Q 046899 87 NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG----AADSHPDL-------------------DQSVVLWSIQD 143 (407)
Q Consensus 87 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~-------------------d~~i~~w~~~~ 143 (407)
+-+.|+| -|.+|+|-..- -|.+|--.+-...+.+.. .....|+. ...+.|||+.+
T Consensus 214 tyv~wSP-~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQ-GIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecC-CceEEEEEecc-ceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 4578999 89999998775 488896544322211110 00111111 36799999998
Q ss_pred cccccccCC--CCCccccc--CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---
Q 046899 144 HVSALAAEP--GSAKSTAS--GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD--- 216 (407)
Q Consensus 144 ~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d--- 216 (407)
+...-.++. .....-+. =+.+....+.-...+|.|++.++...+..-.-.-..|....|+|.+ ++||--+..
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~ 370 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNN 370 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCc-ceEEEEcccccC
Confidence 854322222 11111000 0112223333344677788777655443332344678889999987 677654321
Q ss_pred --CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE----------EeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899 217 --SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT----------GSADNSIHMFDRRKLTSDGVGSPIHKF 284 (407)
Q Consensus 217 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t----------g~~dg~i~vwd~~~~~~~~~~~~~~~~ 284 (407)
..+.+-.+-+.+ .+++..-+.-.=..+-|-. +|.+|+. ++.-..+.|+.++.- .-++...
T Consensus 371 ~parvtL~evPs~~--~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK-----dIpve~v 442 (698)
T KOG2314|consen 371 IPARVTLMEVPSKR--EIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK-----DIPVEVV 442 (698)
T ss_pred CcceEEEEecCccc--eeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeecc-----CCCceee
Confidence 234454444443 2322222222222355555 5555543 233335667777762 2344444
Q ss_pred cCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCC-CCc---ccccccCCCcccCCCCcCcchhccccceeeeeEee
Q 046899 285 EGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEK-IGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHL 358 (407)
Q Consensus 285 ~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~-~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~ 358 (407)
. -...|...+|-|.|....+..+. -.++.+|.+++ ... +..++. ...+.+.|||.
T Consensus 443 e-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk---------------- 503 (698)
T KOG2314|consen 443 E-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK---------------- 503 (698)
T ss_pred e-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC----------------
Confidence 4 46789999999999865333332 35788998883 222 222322 33456667665
Q ss_pred CccceeeeEEE---eeeEEEeecc
Q 046899 359 IHGRLLVCLTM---VKVLEIWRMI 379 (407)
Q Consensus 359 ~~~~~i~~~~~---d~~i~iwd~~ 379 (407)
|..++.+.. .|.+.++|..
T Consensus 504 --G~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 504 --GRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred --CcEEEEEEecccccceEEEecc
Confidence 777775544 5699999987
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.96 E-value=0.005 Score=53.66 Aligned_cols=207 Identities=14% Similarity=0.192 Sum_probs=124.8
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCc-EEEEeCcCCCCccccc--------CcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 85 EVNRIRELPQNSKIVATHTDSPD-VLIWDVEAQPNRHAVL--------GAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~--------~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
....++.+|..+..++.+-.-|+ ..+||..+++....+. +|..+.++ |. .+|-.+
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d--G~-~LytTE------------- 69 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD--GR-LLYTTE------------- 69 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC--CC-EEEEec-------------
Confidence 34556677767777777776664 6788988876554432 23222221 11 111111
Q ss_pred cccccCCCCCccccccCCCCCCCCCCC-CcCceeeEeecccCEEEEEECCCCCcEEEEEeC------------------C
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESP-SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD------------------D 216 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~------------------d 216 (407)
.-.....|.|-+||.. ..+.+.++..|.-.-..+.+.|++ ..|+.+.. +
T Consensus 70 -----------nd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 70 -----------NDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred -----------cccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcC
Confidence 1113455666777776 566677777666566678888988 44554421 2
Q ss_pred CcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEEeCCCc-------EEEEeCCCCCCCCCCCceeeec--
Q 046899 217 SCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTGSADNS-------IHMFDRRKLTSDGVGSPIHKFE-- 285 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg~~dg~-------i~vwd~~~~~~~~~~~~~~~~~-- 285 (407)
..+..-|.++++......+ ..|.-.+..+++++ ++..++..-..|. |-+++... .+..+.
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~--------~~~~~~~p 208 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG--------ALRLLPAP 208 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC--------cceeccCC
Confidence 3344455556652112223 34667888999988 7766666544442 33333222 222222
Q ss_pred -----CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 286 -----GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 286 -----~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
.-...+-+|++++++..+.+|+-..+.+.+||..+++.+....
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 2356899999999999888888889999999999987766554
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.95 E-value=0.00045 Score=65.65 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=71.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc------
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK------ 324 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~------ 324 (407)
++++... .++.|.+.|.++....+ .+.+..+.. ......++++|||+++++++..+.+|.|.|+.+.+..
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~-~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAG-SALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCC-cceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 5666555 36789999988611000 244555553 4456899999999999999999999999999986642
Q ss_pred ------cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 325 ------QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 325 ------~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+.+-..+| ...+| .+.+....+.-.|+.|-.|++.
T Consensus 363 ~~~~vvaevevGlGP-LHTaF------------------Dg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 363 PRDAVVAEPELGLGP-LHTAF------------------DGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ccceEEEeeccCCCc-ceEEE------------------CCCCCEEEeEeecceeEEEehH
Confidence 111111111 12233 3336778899999999999996
No 324
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.94 E-value=0.0002 Score=61.59 Aligned_cols=177 Identities=13% Similarity=0.090 Sum_probs=104.4
Q ss_pred cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee-cccC---cce
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE-KAHN---ADI 242 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~---~~v 242 (407)
+..+..++.+..+|..+++.+-.... ...+....... + ..++.++.++.|..+|..+++ ..... .... ...
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD-G-GRVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGVR 113 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE-T-TEEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCSTB
T ss_pred EEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec-c-cccccccceeeeEecccCCcc--eeeeeccccccccccc
Confidence 44446788888888888887766653 22111111222 2 356666688899999999998 44442 2221 111
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC----------EEEEEEcCCCCCEEEEeeCCCe
Q 046899 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA----------VLCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~----------v~~v~~~~~~~~ll~s~~~d~~ 312 (407)
....... .+..++.+..++.|..+|+++ ++.+......... +..-....++ .++ .++.++.
T Consensus 114 ~~~~~~~-~~~~~~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~g~ 184 (238)
T PF13360_consen 114 SSSSPAV-DGDRLYVGTSSGKLVALDPKT------GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVY-VSSGDGR 184 (238)
T ss_dssp --SEEEE-ETTEEEEEETCSEEEEEETTT------TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEE-EECCTSS
T ss_pred cccCceE-ecCEEEEEeccCcEEEEecCC------CcEEEEeecCCCCCCcceeeecccccceEEECC-EEE-EEcCCCe
Confidence 1222222 367788888899999999999 8888877664322 1222222344 465 4555664
Q ss_pred -EEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 313 -LNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 313 -i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+.+ |+.+++.+-... ... .. .....+++.|+..+.++.|..||+.
T Consensus 185 ~~~~-d~~tg~~~w~~~-~~~-~~-------------------~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 185 VVAV-DLATGEKLWSKP-ISG-IY-------------------SLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEE-ETTTTEEEEEEC-SS--EC-------------------ECEECCCTEEEEEETTTEEEEEETT
T ss_pred EEEE-ECCCCCEEEEec-CCC-cc-------------------CCceeeCCEEEEEeCCCEEEEEECC
Confidence 666 999977442111 111 00 1122346777777788999999998
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.003 Score=61.25 Aligned_cols=129 Identities=9% Similarity=0.161 Sum_probs=87.4
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
..++.+++.+.+- ..+|.|-.||.|.++.-. ..+-........-.++|+.+.+.. ++..++-...-..|.+|.+..
T Consensus 125 ~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 125 PSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred CCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecC
Confidence 4578888998886 789999999999988532 111111222233467999999977 666533333356799999985
Q ss_pred CCCCCCCCc-eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-cCCC
Q 046899 272 LTSDGVGSP-IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKY 332 (407)
Q Consensus 272 ~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~ 332 (407)
..| +..+..|..+++|..+++....++ +++ +.-+.+||....+..-+++ ++..
T Consensus 203 ------r~p~~~~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 203 ------RTPSLKVLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred ------CCcceeeeccCCccceeeecCCCCccEE-Eec-CceEEEEcCCCcceeeeecCCCeE
Confidence 333 445777888999999997766565 333 5679999988766555555 4433
No 326
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.81 E-value=0.00095 Score=57.38 Aligned_cols=140 Identities=12% Similarity=0.077 Sum_probs=82.7
Q ss_pred cccccCCCCCCCCCCCCcCceeeE-eecc---cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc-
Q 046899 167 NASKSGGNGDKPLESPSIGARGKY-LGHE---DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD- 241 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~-~~~~---~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 241 (407)
+..+..++.+..+|..+++.+-.. .... ...........+ ..++.+..++.|..+|+++++ ...........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~--~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGK--LLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTE--EEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCc--EEEEeecCCCCC
Confidence 344446667888888888887763 3221 111122222224 567888889999999999998 44444332211
Q ss_pred ---------e-EEEEecCCCCCEEEEEeCCCc-EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 242 ---------I-HCVDWNPHDVNLILTGSADNS-IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 242 ---------v-~~l~~~~~~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
+ ..+.+. ++ .++.++.++. +.+ |+.+ ++.+.... ...+..+ ....+..|+ .++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~t------g~~~w~~~--~~~~~~~-~~~~~~~l~-~~~~~ 221 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLAT------GEKLWSKP--ISGIYSL-PSVDGGTLY-VTSSD 221 (238)
T ss_dssp S--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTT------TEEEEEEC--SS-ECEC-EECCCTEEE-EEETT
T ss_pred CcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCC------CCEEEEec--CCCccCC-ceeeCCEEE-EEeCC
Confidence 1 233333 34 6666677775 555 9998 66554333 2223332 334566565 55589
Q ss_pred CeEEEEeCCCCCc
Q 046899 311 GILNIWDHEKIGE 323 (407)
Q Consensus 311 ~~i~vwd~~~~~~ 323 (407)
+.|..||+++++.
T Consensus 222 ~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 222 GRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEETTTTEE
T ss_pred CEEEEEECCCCCE
Confidence 9999999999765
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0014 Score=62.09 Aligned_cols=118 Identities=6% Similarity=0.077 Sum_probs=79.6
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee----cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE----KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
+.+..+..++.. .++|.|+..|.|.++-++...++..... ..|+..|++++|++ ++..+++|...|.|..-.+.
T Consensus 77 ~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 77 GITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEec
Confidence 445566778877 8899999999999999988654322222 23678999999999 99999999999999888776
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
... -. ......+-.-.+.|-.+... ++ +||++... ...+++++.
T Consensus 155 s~~-~~-~~~~q~il~~ds~IVQlD~~-q~-~LLVStl~--r~~Lc~tE~ 198 (726)
T KOG3621|consen 155 SRQ-AF-LSKSQEILSEDSEIVQLDYL-QS-YLLVSTLT--RCILCQTEA 198 (726)
T ss_pred hhh-hh-ccccceeeccCcceEEeecc-cc-eehHhhhh--hhheeecch
Confidence 510 00 12233333446778777765 33 35544442 234666654
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.71 E-value=0.0046 Score=57.67 Aligned_cols=214 Identities=11% Similarity=-0.001 Sum_probs=112.9
Q ss_pred CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEE-EEECC--CCCcE
Q 046899 133 DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED-VQFCP--SSAQE 209 (407)
Q Consensus 133 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~-l~~~~--~~~~~ 209 (407)
++.+..+|..++.................-.+..+..+..++.+..+|..+++.+-.+......+.. ..-+| .+ ..
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~ 207 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GG 207 (394)
T ss_pred CCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CE
Confidence 5677777777665433322221111100011223445667788888888888876555422111000 00011 12 24
Q ss_pred EEEEeCCCcEEEEEcCCCCCCceeeecc-cC---c---ceEEEEecCC-CCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899 210 FCSVGDDSCLILWDARSGSTPAVKVEKA-HN---A---DIHCVDWNPH-DVNLILTGSADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 210 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~---~---~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
++.++.+|.+...|..+++. ...... .. . ....+..+|. .+..++.++.+|.+..+|..+ ++.+
T Consensus 208 v~~~~~~g~v~a~d~~~G~~--~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t------G~~~ 279 (394)
T PRK11138 208 AIVGGDNGRVSAVLMEQGQL--IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS------GQIV 279 (394)
T ss_pred EEEEcCCCEEEEEEccCChh--hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC------CCEE
Confidence 66677889999999988873 222110 00 0 0011111220 234566777899999999998 7766
Q ss_pred eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc
Q 046899 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG 361 (407)
Q Consensus 282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~ 361 (407)
.+.... ....+.. .+..++ .++.++.+..+|..+++.+-......... .-+| .. .+
T Consensus 280 W~~~~~--~~~~~~~--~~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~sp-------------~v---~~ 335 (394)
T PRK11138 280 WKREYG--SVNDFAV--DGGRIY-LVDQNDRVYALDTRGGVELWSQSDLLHRL---LTAP-------------VL---YN 335 (394)
T ss_pred EeecCC--CccCcEE--ECCEEE-EEcCCCeEEEEECCCCcEEEcccccCCCc---ccCC-------------EE---EC
Confidence 554321 1112222 344465 66779999999999876543222111110 0011 11 15
Q ss_pred ceeeeEEEeeeEEEeecc
Q 046899 362 RLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 362 ~~i~~~~~d~~i~iwd~~ 379 (407)
+.|+.++.+|.|++.|..
T Consensus 336 g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 336 GYLVVGDSEGYLHWINRE 353 (394)
T ss_pred CEEEEEeCCCEEEEEECC
Confidence 677788888888888876
No 329
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00028 Score=65.76 Aligned_cols=94 Identities=19% Similarity=0.362 Sum_probs=76.6
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE-EEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
....+..+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+ ++|.|-.||+|++-
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLH 89 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEec-------cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEE
Confidence 355678899999 88999999999999999887 478888887777777 999999999 66899999999999
Q ss_pred eCCCCCcccccc-cCCCcccCCCCc
Q 046899 317 DHEKIGEKQDYG-ELKYPIIHPAYS 340 (407)
Q Consensus 317 d~~~~~~~~~~~-~~~~~v~~~~~s 340 (407)
|++++..+..+. ....+|..+-|+
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EccCCCceeccccccccchheeecc
Confidence 999988877632 234455555554
No 330
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00029 Score=65.62 Aligned_cols=94 Identities=15% Similarity=0.290 Sum_probs=78.0
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE-EEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH-CVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
...+.-+.|+|.. .++|.+..+|.|.+..++ .+ .+.++..++..++ +++|.| ||+++|.|-.||+|++-|+.+
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~q--Rlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~- 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQ--RLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK- 93 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEec-cc--eeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC-
Confidence 3467789999988 799999999999999988 44 4777777888887 999999 999999999999999999999
Q ss_pred CCCCCCCceeee-cCCCCCEEEEEEcC
Q 046899 273 TSDGVGSPIHKF-EGHSAAVLCVQWSP 298 (407)
Q Consensus 273 ~~~~~~~~~~~~-~~h~~~v~~v~~~~ 298 (407)
+..+..+ ..-...|.++-|.+
T Consensus 94 -----~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 -----GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred -----CCceeccccccccchheeeccc
Confidence 6666553 22466788888874
No 331
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00064 Score=62.18 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=100.5
Q ss_pred cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC------cEEEEEeCCCcEEEEEcCCCCCCceeeeccc--
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA------QEFCSVGDDSCLILWDARSGSTPAVKVEKAH-- 238 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-- 238 (407)
+..+.....+.-.|+..|+.+...+-+.. |+-+.+.|+.. ..-+.|-.|..|.-||.|-.....+...+.|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455667777889999999999887666 77777777641 1123456688999999986543112222233
Q ss_pred --CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 239 --NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 239 --~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
.....|.+-. ...++++|+.+|.||+||.-. ......+.+-..+|..|..+.+|++||+|| +..+.+.
T Consensus 428 ~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi 497 (644)
T KOG2395|consen 428 STKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIG------RRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLI 497 (644)
T ss_pred ccccccceeeec--CCceEEEeecCCcEEeehhhh------hhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEE
Confidence 2234455544 456899999999999999843 344456777889999999999999998666 6888888
Q ss_pred eCC
Q 046899 317 DHE 319 (407)
Q Consensus 317 d~~ 319 (407)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 875
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.63 E-value=0.0022 Score=59.08 Aligned_cols=245 Identities=12% Similarity=0.101 Sum_probs=118.1
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCC----CCCCCcEEEEeccccccccccCCCCCccc
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSH----PDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~----~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
.|+.+.|.+..+ .|+.|...|.|.||.+...+... ......... ...++.-.+-|+.....
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~------------ 69 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP------------ 69 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--------------
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC------------
Confidence 588999999444 68888899999999987654332 000000000 00011112222221000
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee--ec
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV--EK 236 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~ 236 (407)
. .+ .+...+...+....++|++++.+.-| ++|.|.++|.+.+.|+|... .+.. +.
T Consensus 70 --~-------------~~----~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--vI~~~~i~ 126 (395)
T PF08596_consen 70 --P-------------SL----KEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--VIYNENIR 126 (395)
T ss_dssp --T-------------T-----SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--EEEEEEGG
T ss_pred --c-------------cc----ccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--EEeecccc
Confidence 0 00 01123444555568999999999877 89999999999999998765 2222 22
Q ss_pred c------cCcceEEEEecC----CCC---CEEEEEeCCCcEEEEeCCCCCCCCCC--CceeeecCCCCCEEEEE-EcCC-
Q 046899 237 A------HNADIHCVDWNP----HDV---NLILTGSADNSIHMFDRRKLTSDGVG--SPIHKFEGHSAAVLCVQ-WSPD- 299 (407)
Q Consensus 237 ~------~~~~v~~l~~~~----~~~---~~l~tg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~h~~~v~~v~-~~~~- 299 (407)
. ....++++.|.- +|+ -.+++|...|.+.+|.+..... +.. +.......+.++|..+. +..+
T Consensus 127 ~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~-g~f~v~~~~~~~~~~~~i~~I~~i~~~~ 205 (395)
T PF08596_consen 127 ESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN-GRFSVQFAGATTNHDSPILSIIPINADT 205 (395)
T ss_dssp G--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG-G-EEEEEEEEE--SS----EEEEEETTT
T ss_pred ccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC-CceEEEEeeccccCCCceEEEEEEECCC
Confidence 2 234677888862 122 5788999999999998852111 001 11112224566666665 3211
Q ss_pred C-------------------CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCc
Q 046899 300 K-------------------SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH 360 (407)
Q Consensus 300 ~-------------------~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~ 360 (407)
| +.+++.+ .+..+|++.+.+.+..............+.+-+ ......
T Consensus 206 G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~-------------~~~~~~ 271 (395)
T PF08596_consen 206 GESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVP-------------TISRNG 271 (395)
T ss_dssp --B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEE-------------EE-EEE
T ss_pred CCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEe-------------ecccCC
Confidence 0 1133333 478899999888665443331111111111100 000234
Q ss_pred cceeeeEEEeeeEEEeeccc
Q 046899 361 GRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 361 ~~~i~~~~~d~~i~iwd~~~ 380 (407)
+..|++...+|.|+++.+.+
T Consensus 272 ~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEEEEEETTSEEEEEETTT
T ss_pred ceEEEEEECCCcEEEEECCC
Confidence 56788888999999998864
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.63 E-value=0.005 Score=44.75 Aligned_cols=103 Identities=11% Similarity=0.130 Sum_probs=69.0
Q ss_pred EEEEEE---CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 197 VEDVQF---CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 197 v~~l~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
|++|++ ..+|.+.|++|+.|..|++|+-.. .+..+ .-.+.|.+++-.. +..|+.+..+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei-~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEI-TETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEE-ecccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence 455554 446668899999999999998542 34444 3345677777665 47799999999999998653
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcC---CCCCEEEEeeCCCeEEE
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGILNI 315 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~~ll~s~~~d~~i~v 315 (407)
.+...+.. ..+.++++.. +|..-|++|-.+|.|-+
T Consensus 73 ------RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 ------RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ------eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 44455543 3366665543 33333469988998753
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00049 Score=64.93 Aligned_cols=120 Identities=12% Similarity=0.171 Sum_probs=87.2
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
...|.--++...+ .+++.|+.-|.+.+|+-..+... .....+-.+.+..++.++ +..++|.|+..|.|.++-+....
T Consensus 33 ~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 33 PARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred cceEEEEEeecCC-ceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence 3344444555556 78999999999999997766631 222233455666777888 78899999999999999887722
Q ss_pred CCCCCCce--eee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 274 SDGVGSPI--HKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 274 ~~~~~~~~--~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
. .... ..+ +.|...|++++|++++..++ +|...|+|.+-.+..
T Consensus 110 p---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 P---RDLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred C---CcceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 1 1111 111 23778999999999999886 999999999988876
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.60 E-value=0.00018 Score=41.17 Aligned_cols=38 Identities=32% Similarity=0.570 Sum_probs=33.3
Q ss_pred CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 046899 185 GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD 223 (407)
Q Consensus 185 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 223 (407)
+++..+..|...|.++.|++.+ ..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3456677889999999999988 7899999999999996
No 336
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.55 E-value=0.00022 Score=40.82 Aligned_cols=39 Identities=33% Similarity=0.789 Sum_probs=33.4
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
.++...+..|...|.+++|++++.. +++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKY-LASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCE-EEEecCCCeEEEcC
Confidence 4567778889999999999998874 57999999999996
No 337
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.49 E-value=0.0074 Score=52.59 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=74.5
Q ss_pred CCCCCCCcCceeeEeecccCE--EEEEECCCCCcEEEEEeC-----CCcEEEEEcCCCCCCceeeecccCcceEEEEecC
Q 046899 177 KPLESPSIGARGKYLGHEDTV--EDVQFCPSSAQEFCSVGD-----DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249 (407)
Q Consensus 177 ~i~d~~~~~~~~~~~~~~~~v--~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~ 249 (407)
.++|..+++..+.+....+.- -.-.|+++| .+|++.-. .|.|-+||...+- ..+..+..|.-.-..+.+.|
T Consensus 31 ~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~-~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAARGY-RRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECcCCc-EEEeEecCCCcChhhEEEcC
Confidence 345555555555554332222 135799999 66666533 5889999999332 24667777776677888999
Q ss_pred CCCCEEEEEe------------------CCCcEEEEeCCCCCCCCCCCceee--e--cCCCCCEEEEEEcCCCC
Q 046899 250 HDVNLILTGS------------------ADNSIHMFDRRKLTSDGVGSPIHK--F--EGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 250 ~~~~~l~tg~------------------~dg~i~vwd~~~~~~~~~~~~~~~--~--~~h~~~v~~v~~~~~~~ 301 (407)
|+..|+++. .+-++.+.|.++ ++.+.. + ..|..+|+.+++.++|.
T Consensus 109 -DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 109 -DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS------GALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred -CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC------CceeeeeecCccccccceeeEEecCCCc
Confidence 887777653 122334444454 666665 4 23778899999999987
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.46 E-value=0.015 Score=49.80 Aligned_cols=114 Identities=13% Similarity=0.290 Sum_probs=64.1
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCCCc-eeee------cccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GSTPA-VKVE------KAHNADIHCVDWNPHDVNLILTGSADNS 263 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~-~~~~------~~~~~~v~~l~~~~~~~~~l~tg~~dg~ 263 (407)
+...+..++|+|.+ +.|+.+-+..-..+|.++. ..... .... ......+.++.++|..+.+++....+..
T Consensus 116 ~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 116 GNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp -SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred CCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 45568999999987 4455556666677777764 11101 1111 1233457899999988888888888899
Q ss_pred EEEEeCCCCCCCCCCCceeeecCCC---------CCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 264 IHMFDRRKLTSDGVGSPIHKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 264 i~vwd~~~~~~~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
|..+|.. ++++..+.-.. ..--.|+|.++|. |+ ..+.-+...++
T Consensus 195 l~~~d~~-------G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 195 LLELDRQ-------GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LY-IVSEPNLFYRF 247 (248)
T ss_dssp EEEE-TT---------EEEEEE-STTGGG-SS---SEEEEEE-TT---EE-EEETTTEEEEE
T ss_pred EEEECCC-------CCEEEEEEeCCcccCcccccCCccEEEECCCCC-EE-EEcCCceEEEe
Confidence 9999954 67666554322 3578999999997 65 44555555443
No 339
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.00045 Score=56.45 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=69.4
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH 287 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h 287 (407)
..++.|+.+|.|.+|....... .......-...|-++--.-.++.+..+++.||.|+.|++.. .+.+.....|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p------~k~~g~~g~h 143 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP------NKVLGYVGQH 143 (238)
T ss_pred ceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeecccc------Cceeeeeccc
Confidence 5789999999999999873321 11111111223333322222566889999999999999987 6667666667
Q ss_pred C-CCEEEEEEcCCCCCEEEEe--eCCCeEEEEeCCCCC
Q 046899 288 S-AAVLCVQWSPDKSSVFGSS--AEDGILNIWDHEKIG 322 (407)
Q Consensus 288 ~-~~v~~v~~~~~~~~ll~s~--~~d~~i~vwd~~~~~ 322 (407)
+ .++..+..+..++.+ +.+ |.|..++.|++....
T Consensus 144 ~~~~~e~~ivv~sd~~i-~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFL-KIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cCCCcceeEEecCCceE-Eeeccccchhhhhcchhhhh
Confidence 7 566666555555533 566 777778888777543
No 340
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.37 E-value=0.02 Score=41.73 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=42.3
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC---CCEEEEEeCCCcEE
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD---VNLILTGSADNSIH 265 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~~l~tg~~dg~i~ 265 (407)
...|.+++-...+ .|+.+..+|+|-+|+-.... .... .+..+.++.+...+ ...|++|-.+|.|-
T Consensus 42 ~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~Rl----WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 42 TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQRL----WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccceEEEEEcCCC--EEEEEecCCEEEEEeCccee----eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3567777766654 69999999999999864433 2222 23335666654312 34788998888774
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.00051 Score=66.17 Aligned_cols=114 Identities=17% Similarity=0.302 Sum_probs=84.4
Q ss_pred EEEECCCCCcEEEEEe----CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899 199 DVQFCPSSAQEFCSVG----DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 199 ~l~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~ 274 (407)
-+.|+|.. .+|++++ ..|.|.||- .++++..-.+. +-.+++++|+| ..-.|+.|-.-|.+.+|....
T Consensus 20 i~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~--- 90 (1416)
T KOG3617|consen 20 ISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNT--- 90 (1416)
T ss_pred ccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCccccc---ceehhhhccCh-HHHHHhhccccceeEEEecCC---
Confidence 35789988 5777765 368888884 44552222222 23356799999 778888998899999999887
Q ss_pred CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899 275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325 (407)
Q Consensus 275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~ 325 (407)
.+.-.....|..+|..+.||++|..+ +|+..-|.+.+|.....++++
T Consensus 91 ---~e~htv~~th~a~i~~l~wS~~G~~l-~t~d~~g~v~lwr~d~~g~~q 137 (1416)
T KOG3617|consen 91 ---TETHTVVETHPAPIQGLDWSHDGTVL-MTLDNPGSVHLWRYDVIGEIQ 137 (1416)
T ss_pred ---ceeeeeccCCCCCceeEEecCCCCeE-EEcCCCceeEEEEeeeccccc
Confidence 44444445699999999999999966 599999999999887554444
No 342
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.34 E-value=0.033 Score=56.49 Aligned_cols=91 Identities=13% Similarity=0.242 Sum_probs=56.2
Q ss_pred EEEEecCCCCCEEEE-----EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe---eCCCeEE
Q 046899 243 HCVDWNPHDVNLILT-----GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS---AEDGILN 314 (407)
Q Consensus 243 ~~l~~~~~~~~~l~t-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~---~~d~~i~ 314 (407)
++|+|-- ||.++|+ ......|+|||.+. ..-.+-..-...=.+++|-|.|..+ |+- +.|+.|.
T Consensus 199 ~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg-------~Lns~se~~~~l~~~LsWkPsgs~i-A~iq~~~sd~~Iv 269 (1265)
T KOG1920|consen 199 TSISWRG-DGEYFAVSFVESETGTRKIRVYDREG-------ALNSTSEPVEGLQHSLSWKPSGSLI-AAIQCKTSDSDIV 269 (1265)
T ss_pred ceEEEcc-CCcEEEEEEEeccCCceeEEEecccc-------hhhcccCcccccccceeecCCCCeE-eeeeecCCCCcEE
Confidence 3588977 8999988 33337999999872 1111111122334578999999844 554 3466799
Q ss_pred EEeCCCC---CcccccccCCCcccCCCCcCc
Q 046899 315 IWDHEKI---GEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 315 vwd~~~~---~~~~~~~~~~~~v~~~~~s~d 342 (407)
++.-+.. .-...++....++..++|+.+
T Consensus 270 ffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 270 FFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEecCCccccccccCCcccccchheeeecCC
Confidence 9974432 222234444555888888776
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.27 E-value=0.0069 Score=59.99 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=86.3
Q ss_pred cEEEEE-eCCCcEEEEEcCCCCCCceeeecccCcc-eEEEEecC----CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899 208 QEFCSV-GDDSCLILWDARSGSTPAVKVEKAHNAD-IHCVDWNP----HDVNLILTGSADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 208 ~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~~~----~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
++|+.. .....|+-.|+..++ .+.....+... |..++-.. .+...-+.|-.+..+..||+|... .+++
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----~k~v 567 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGK--VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----NKLV 567 (794)
T ss_pred ceEeecCCCCCceEEEecCCCc--EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC----Ccee
Confidence 444433 456789999999998 67777666543 55443321 123445677788999999999732 1222
Q ss_pred e-eec--CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 282 H-KFE--GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 282 ~-~~~--~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
. ..+ ......+|++-+.+|. ||.|+.+|.||+||--..+....+++-+.||.++..+.|
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~D 629 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTAD 629 (794)
T ss_pred eccccccccCCCceEEEecCCce--EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCC
Confidence 1 111 2345688888888886 479999999999995433334567788999999999988
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.13 E-value=0.00058 Score=55.84 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=83.9
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC
Q 046899 209 EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS 288 (407)
Q Consensus 209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~ 288 (407)
.+...+.||.|+-++++..... .+....+.....-+. .+.-++.|+.+|.|.+|..... +........-.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s-~rse~~~~e~~~v~~----~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKES-CRSERFIDEGQRVVT----ASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGE 101 (238)
T ss_pred hhccccCCcccccchhhhhhhh-hhhhhhhhcceeecc----cCceEEeecccceEEEecCCcc-----chHHHhhhccc
Confidence 3445567888888888765422 122222332211122 4567899999999999988742 22222222223
Q ss_pred CCEEEEE-EcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899 289 AAVLCVQ-WSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL 367 (407)
Q Consensus 289 ~~v~~v~-~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~ 367 (407)
.+|.++- -..++. +..+++.||.|+.|++...+.+.....|.. .++. . +...+....|..+
T Consensus 102 e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~----~~~e----------~---~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKPNKVLGYVGQHNF----ESGE----------E---LIVVGSDEFLKIA 163 (238)
T ss_pred ccceeccccccccc-eeEEeccCCceeeeccccCceeeeeccccC----CCcc----------e---eEEecCCceEEee
Confidence 3343332 222333 557899999999999998777766555542 1110 0 2223335556666
Q ss_pred --EEeeeEEEeeccc
Q 046899 368 --TMVKVLEIWRMID 380 (407)
Q Consensus 368 --~~d~~i~iwd~~~ 380 (407)
|.|..++.|++..
T Consensus 164 ~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 164 DTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccchhhhhcchhh
Confidence 8888999998863
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.01 Score=55.25 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=80.1
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCc--EEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC--LILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
..+.++++.+++...... ..+.-..-+|+|+|..++++...||. |.+.|+..++.+. +....+.-..=.|+| +
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~sp-d 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSP-D 292 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCC-C
Confidence 345666776665544433 23333456899999777777777876 4555766665222 222222223567899 7
Q ss_pred CCEEEEE-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCCCCc
Q 046899 252 VNLILTG-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEKIGE 323 (407)
Q Consensus 252 ~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~ 323 (407)
|+.++-. +..|.-.||-+... +..+..+......-..-.|+|+|++++.....+|. |.+.|+.+...
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~-----g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLE-----GSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCC-----CCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 7766554 44565555544332 23333333332322377899999987655544455 66777666553
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.94 E-value=0.35 Score=45.23 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=46.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL 330 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 330 (407)
+....+....++.+.+.+... .+. +. ..+++..++.||+|+++ |.-..+|.+.+....-.+....+...
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~------~~~---i~-~~~~i~~iavSpng~~i-Al~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENS------FKQ---ID-SDGPIIKIAVSPNGKFI-ALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred CcceEEEEecCCEEEEEEccc------ccc---cc-CCCCeEEEEECCCCCEE-EEEECCCCEEEEECcccceeEEeecC
Confidence 334444444555666555443 111 22 24689999999999965 77788899999886654444444433
Q ss_pred -CCcccCCCC
Q 046899 331 -KYPIIHPAY 339 (407)
Q Consensus 331 -~~~v~~~~~ 339 (407)
..+...+.|
T Consensus 258 ~~~~p~~~~W 267 (410)
T PF04841_consen 258 SKSPPKQMAW 267 (410)
T ss_pred cCCCCcEEEE
Confidence 223344444
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.16 Score=46.97 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=127.2
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN 164 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (407)
.-..++.++...+..++...+..|.+.|..+............ +....+.+.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~------------------------P~~~~~~~~~~-- 128 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG------------------------PVGLAVDPDGK-- 128 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccC------------------------CceEEECCCCC--
Confidence 3456677775566777777778999999666554433322111 00111111110
Q ss_pred Ccccccc--CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-e---eccc
Q 046899 165 SKNASKS--GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-V---EKAH 238 (407)
Q Consensus 165 ~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~ 238 (407)
...++.. .++.+.+.|..+.+..........+ ..+++.|++...+++-..++.|.+.|.+... ... . ...-
T Consensus 129 ~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~--v~~~~~~~~~~~ 205 (381)
T COG3391 129 YVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS--VVRGSVGSLVGV 205 (381)
T ss_pred EEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc--eecccccccccc
Confidence 0111111 4566777777777777775443344 8899999995466666689999999976654 221 0 1122
Q ss_pred CcceEEEEecCCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCCceee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 239 NADIHCVDWNPHDVNLILTGSAD---NSIHMFDRRKLTSDGVGSPIHK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
...-..+.++| ++..+...... +.+...|..+ ...... ...-......+..+|+|..+.+.-+..+.+.
T Consensus 206 ~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 206 GTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred CCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCC------ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEE
Confidence 23346788999 77755544433 5888898887 444443 2211114677899999998876656678999
Q ss_pred EEeCCCCCccccccc
Q 046899 315 IWDHEKIGEKQDYGE 329 (407)
Q Consensus 315 vwd~~~~~~~~~~~~ 329 (407)
+.|..+.........
T Consensus 279 vid~~~~~v~~~~~~ 293 (381)
T COG3391 279 VIDGATDRVVKTGPT 293 (381)
T ss_pred EEeCCCCceeeeecc
Confidence 999998776665544
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.0024 Score=63.40 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=65.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL 330 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 330 (407)
-+..++.|++.|.+..+|++.. -.+...-..-.++|++++|+.+|..+ +.|-.+|.|.+||+.+.+.++.+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg~~l-~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDGSLL-LAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCCcee-ccccCCCcEEEEEccCCcceeeeeec
Confidence 4567899999999999998862 12222222346799999999999955 68888999999999999999999999
Q ss_pred CCcccCCCC
Q 046899 331 KYPIIHPAY 339 (407)
Q Consensus 331 ~~~v~~~~~ 339 (407)
..|.+++-+
T Consensus 172 ~ap~t~vi~ 180 (1206)
T KOG2079|consen 172 GAPVTGVIF 180 (1206)
T ss_pred CCccceEEE
Confidence 988877655
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.90 E-value=0.072 Score=44.80 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=80.8
Q ss_pred CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899 203 CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 203 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
.++...+++.|+..+.+.--|..+++ .... ..-...+-+-+.- -+++++.|...|.+++.+.++ +....
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~--~~We-~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~t------Gs~~w 87 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGN--LIWE-AILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKT------GSQIW 87 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCc--EEee-hhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecc------hhhee
Confidence 34445789999999999999999988 3322 2223333332222 356799999999999999999 87777
Q ss_pred eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
.+..-+.-=......+++. ++-.|+.|++...-|.++...+-...
T Consensus 88 ~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 88 NFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence 7765333223344566777 55699999999999999877765543
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.86 E-value=0.13 Score=49.39 Aligned_cols=191 Identities=13% Similarity=0.093 Sum_probs=98.6
Q ss_pred CCCCCCCCCCCcCceeeEeeccc--------------------CE-EEEEECCCCCcEEEEEeCCC--------------
Q 046899 173 GNGDKPLESPSIGARGKYLGHED--------------------TV-EDVQFCPSSAQEFCSVGDDS-------------- 217 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~~~~~--------------------~v-~~l~~~~~~~~~l~s~~~dg-------------- 217 (407)
++.+..+|..+++.+=.+..... .| ...++.+.+ ..++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCC
Confidence 45666778777776655432111 01 123344444 4666676554
Q ss_pred ----cEEEEEcCCCCCCceeeec--ccCc----c---eEEEEecCCCCC---EEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899 218 ----CLILWDARSGSTPAVKVEK--AHNA----D---IHCVDWNPHDVN---LILTGSADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 218 ----~i~iwd~~~~~~~~~~~~~--~~~~----~---v~~l~~~~~~~~---~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
.|.-.|..+++ .....+ .+.. . ..-......++. .++.++.+|.+..+|.++ ++.+
T Consensus 253 ~~~~~l~Ald~~tG~--~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t------G~~~ 324 (488)
T cd00216 253 LYTDSIVALDADTGK--VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT------GKLI 324 (488)
T ss_pred CceeeEEEEcCCCCC--EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC------CcEe
Confidence 79999999988 343332 1210 0 000011111232 678888999999999999 8888
Q ss_pred eeecCCCCCEEEEEEcCCCCCEEEE-----------------eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcch
Q 046899 282 HKFEGHSAAVLCVQWSPDKSSVFGS-----------------SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDML 344 (407)
Q Consensus 282 ~~~~~h~~~v~~v~~~~~~~~ll~s-----------------~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 344 (407)
...... ...++.+| ..+++. ...+|.+.-.|+.+++.+=+....... . .+
T Consensus 325 W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~-----~---~~ 391 (488)
T cd00216 325 SARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR-----D---SW 391 (488)
T ss_pred eEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc-----c---cc
Confidence 765421 11233333 223321 123577888888877655333221000 0 00
Q ss_pred hccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899 345 DIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL 393 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 393 (407)
+.......+-... .++.|+.++.||.|+.+|.. +|+.+-++
T Consensus 392 ~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~------tG~~lW~~ 432 (488)
T cd00216 392 NIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDAT------TGKELWKF 432 (488)
T ss_pred ccCCcccCcceEe--cCCeEEEECCCCeEEEEECC------CCceeeEE
Confidence 0000000000011 24678888889999999987 66655443
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.83 E-value=0.024 Score=52.90 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=87.1
Q ss_pred cCceeeEeecccCEEEEEECCCCCcEEEEEeCC---CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE-EEEe
Q 046899 184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI-LTGS 259 (407)
Q Consensus 184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~tg~ 259 (407)
+...+.+......+..-+|+|++..+....-.. ..+.++|+.++..+.+..+.++. ..-+|+| |++.| ++..
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fsp-DG~~l~f~~~ 257 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSP-DGSKLAFSSS 257 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCC-CCCEEEEEEC
Confidence 334444444455677778999985544443332 35999999998865555554444 4568999 65555 5556
Q ss_pred CCCc--EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE--eCCCCCcccccccCCCccc
Q 046899 260 ADNS--IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW--DHEKIGEKQDYGELKYPII 335 (407)
Q Consensus 260 ~dg~--i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~ 335 (407)
.||. |.++|+.. .. +..+..-.+.-..=.|+|+|++|..+.+..|.-.|| |++.... +.+......-.
T Consensus 258 rdg~~~iy~~dl~~------~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 258 RDGSPDIYLMDLDG------KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred CCCCccEEEEcCCC------Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 6775 55566665 33 333443333333567999999998787777765555 5444332 22222222222
Q ss_pred CCCCcCc
Q 046899 336 HPAYSSD 342 (407)
Q Consensus 336 ~~~~s~d 342 (407)
...+|||
T Consensus 330 ~p~~Spd 336 (425)
T COG0823 330 NPVWSPD 336 (425)
T ss_pred CccCCCC
Confidence 6778887
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.26 Score=43.87 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=82.4
Q ss_pred cCEEEEEECCCCCcEEEEEeC------C---CcEEEEEcC-CCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCc
Q 046899 195 DTVEDVQFCPSSAQEFCSVGD------D---SCLILWDAR-SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNS 263 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~------d---g~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~ 263 (407)
...+.+...|+| .+.++... + ..-.+|-+. .+. .......+-..-+.|+|+| +++.|+.+.. .+.
T Consensus 111 ~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~--~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~ 186 (307)
T COG3386 111 NRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGG--VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANR 186 (307)
T ss_pred CCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCC--EEEeecCcEEecCceEECC-CCCEEEEEeCCCCe
Confidence 345677888888 44443332 0 111344444 344 3445555556668999999 8877776655 478
Q ss_pred EEEEeCCCCC-CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-eEEEEeCCCCCcccccccCCCcccCCCC
Q 046899 264 IHMFDRRKLT-SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-ILNIWDHEKIGEKQDYGELKYPIIHPAY 339 (407)
Q Consensus 264 i~vwd~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 339 (407)
|.-|++.... ..........+....+..-.++...+|. +.+++..+| .|.+|+.. ++.+..+.-....+++++|
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 8888776210 0000111222333456667788888888 443444443 89999988 7877777665566667666
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.0019 Score=62.44 Aligned_cols=109 Identities=20% Similarity=0.373 Sum_probs=84.2
Q ss_pred EEEEecCCCCCEEEEEe----CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 243 HCVDWNPHDVNLILTGS----ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~----~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
+-.+|+| ...+|++++ ..|+|.||-- + ++|-+.... .-.+++++|||..- +|+.|-.-|.+.+|..
T Consensus 19 ti~SWHP-sePlfAVA~fS~er~GSVtIfad-t------GEPqr~Vt~-P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 19 TISSWHP-SEPLFAVASFSPERGGSVTIFAD-T------GEPQRDVTY-PVHATSLCWHPEEF-VLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccCC-CCceeEEEEecCCCCceEEEEec-C------CCCCccccc-ceehhhhccChHHH-HHhhccccceeEEEec
Confidence 4467888 777887765 3578888843 3 454433321 22367799999876 6689999999999999
Q ss_pred CCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 319 EKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 319 ~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+.+.......|..+++.+.||++ +..++++-.-|.|.+|...
T Consensus 89 ~~~e~htv~~th~a~i~~l~wS~~------------------G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDWSHD------------------GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeeeeccCCCCCceeEEecCC------------------CCeEEEcCCCceeEEEEee
Confidence 987777777889999999999999 8888888888899999875
No 354
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.0097 Score=59.33 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=75.0
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH 287 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h 287 (407)
..++.|+..|.+...|++..-.+ ...-..-.++|++++|+. +|..++.|-.+|.|.+||+.. +++++.+..|
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~------~k~l~~i~e~ 171 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR------AKILKVITEH 171 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC------Ccceeeeeec
Confidence 46888888899999998764322 222234467999999998 999999999999999999998 7888888877
Q ss_pred CCCEEEEEE---cCCCCCEEEEeeCCCeEEEEeCC
Q 046899 288 SAAVLCVQW---SPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 288 ~~~v~~v~~---~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
..+++++-+ ..++. .+.++...|. +|.+.
T Consensus 172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 776655543 34455 3347766665 56653
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.16 Score=47.05 Aligned_cols=117 Identities=14% Similarity=0.230 Sum_probs=87.3
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC---CCcEEEEeCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA---DNSIHMFDRRKLT 273 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~~ 273 (407)
-..++.++.+.+.++....++.|.+.|..+.. ..... .-......++++| ++..+..+.. ++.+.+.|..+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~--~~~~~-~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t-- 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT--VLGSI-PVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAAT-- 149 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccc--eeeEe-eeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCC--
Confidence 35678888886677777778999999977665 22222 2223567899999 6666665555 68999999988
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
.+...+...-..+ ..+++.|+|..++++-..++.|.+.|.......
T Consensus 150 ----~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 150 ----NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred ----CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 6777776554455 899999999988888888999999997765444
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.45 Score=42.37 Aligned_cols=119 Identities=12% Similarity=0.101 Sum_probs=79.1
Q ss_pred cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CC---CCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899 184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GS---TPAVKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
+..+..+..+-..-+.|+|+|++..++++=+..+.|.-|++.. +. ...........+..-.++.+. ++++.+++
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a 230 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAA 230 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEec
Confidence 4444445455556688999999965566666678899988762 11 111222223445556677777 78877655
Q ss_pred eCCC-cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc-CCCCCEEEEeeCC
Q 046899 259 SADN-SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS-PDKSSVFGSSAED 310 (407)
Q Consensus 259 ~~dg-~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~ll~s~~~d 310 (407)
..+| .|.+|+.. ++++..+......+++++|- |+.+.|++|+...
T Consensus 231 ~~~g~~v~~~~pd-------G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 231 VWGGGRVVRFNPD-------GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ccCCceEEEECCC-------CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 5554 89999987 57888887766778888885 4567777776644
No 357
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.61 E-value=0.0092 Score=36.19 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=28.7
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
....|.+++|+| ..++||.|..+|.|.++.++
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 446799999999 88899999999999999984
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.25 Score=41.68 Aligned_cols=138 Identities=12% Similarity=0.006 Sum_probs=84.9
Q ss_pred cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEE
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD 246 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 246 (407)
+..++..+.+.-.|.++++.+-.-. -...|.+-+.- -| +.++.|...|.+.+-+..++. ....+..-..--....
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs--~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGS--QIWNFVILETVKVRAQ 100 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchh--heeeeeehhhhccceE
Confidence 4456666666666777766543221 12334333332 24 578999999999999999997 3444433222112234
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 247 WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 247 ~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
.++ ++.++..|+.|+..+..|.++ ..++...+...+.-.+-+..|-...|+++. ..|.+.--.
T Consensus 101 ~d~-~~glIycgshd~~~yalD~~~------~~cVykskcgG~~f~sP~i~~g~~sly~a~-t~G~vlavt 163 (354)
T KOG4649|consen 101 CDF-DGGLIYCGSHDGNFYALDPKT------YGCVYKSKCGGGTFVSPVIAPGDGSLYAAI-TAGAVLAVT 163 (354)
T ss_pred EcC-CCceEEEecCCCcEEEecccc------cceEEecccCCceeccceecCCCceEEEEe-ccceEEEEc
Confidence 456 889999999999999999999 788888775444333444556333355333 345443333
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.025 Score=52.25 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=86.6
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC-------CEEEEEeCCCcEEEEeCCCCCCCCCCCc
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV-------NLILTGSADNSIHMFDRRKLTSDGVGSP 280 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~~l~tg~~dg~i~vwd~~~~~~~~~~~~ 280 (407)
-+|.+++.-..|+--|++.++ .+.....+.. |+-+.+.| +. ..-+.|-.|..|.-||+|... ...
T Consensus 347 lil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----~~k 418 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----KNK 418 (644)
T ss_pred eEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccC----cce
Confidence 345566667788888999888 5666655555 77777777 32 223456778899999999643 112
Q ss_pred eeeecCC----CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 281 IHKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 281 ~~~~~~h----~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
+..-++| ...-.|.+-..+|. | |.||.+|.||+||--..+....+++.+.+|..+..+.|
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG~-I-vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtad 482 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESGY-I-VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTAD 482 (644)
T ss_pred eeeeeccccccccccceeeecCCce-E-EEeecCCcEEeehhhhhhhhhcccccCCceeeEEeecc
Confidence 3222322 23456677666775 4 79999999999997544445678899999999888777
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.44 E-value=0.19 Score=48.53 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=67.0
Q ss_pred CCCCCCCCCCC----cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC----------ceeeeccc
Q 046899 173 GNGDKPLESPS----IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP----------AVKVEKAH 238 (407)
Q Consensus 173 ~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~ 238 (407)
++.+.++|..+ +..+..+-.-......+.++|+|..+++++..+.+|.+.|+.+.... ..... .-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-ev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-EL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-cc
Confidence 34566777766 33344444455667889999999666667777999999999875410 11111 12
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
...-...+|++ +++...|-.-|..|..||+..
T Consensus 374 GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33345788988 788888888999999999875
No 361
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.37 E-value=0.015 Score=35.23 Aligned_cols=32 Identities=22% Similarity=0.656 Sum_probs=28.8
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
....|.+++|+| ...++|.|+.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 356799999999 89999999999999999984
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.30 E-value=0.12 Score=48.47 Aligned_cols=214 Identities=10% Similarity=0.094 Sum_probs=100.3
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC-CCCC-------CCCCcEEEE-eccccc-cccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA-DSHP-------DLDQSVVLW-SIQDHV-SALAAE 151 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~-------~~d~~i~~w-~~~~~~-~~~~~~ 151 (407)
..-....|.++| +++.++.++ ||.-.|+..........-.+.. .+.. +..++|.++ ++.... ..+...
T Consensus 31 ~~~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~ 108 (443)
T PF04053_consen 31 CEIYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP 108 (443)
T ss_dssp -SS--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S
T ss_pred CCcCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC
Confidence 555689999999 888887754 6788888743322211111100 0011 114556664 222211 011111
Q ss_pred CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC----
Q 046899 152 PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG---- 227 (407)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~---- 227 (407)
. ...-+..| .++....++.+.+||..+++.++.+... +|..+.|++++ .+++..+. ..+.+.+....
T Consensus 109 ~-~~~~If~G----~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g-~~val~t~-~~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 109 F-SVEKIFGG----NLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDG-ELVALVTK-DSIYILKYNLEAVAA 179 (443)
T ss_dssp S--EEEEE-S----SSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHH
T ss_pred c-ccceEEcC----cEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCC-CEEEEEeC-CeEEEEEecchhccc
Confidence 1 01111112 3444555557999999999999888632 48999999998 67777765 46777665433
Q ss_pred -----CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899 228 -----STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 228 -----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 302 (407)
-.........-...|.+..|.- + -++.| +.. .++.+ -. ....++..-..++.=+.+.|....
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~-d-~fiYt-T~~-~lkYl--~~-------Ge~~~i~~ld~~~yllgy~~~~~~ 246 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVE-D-CFIYT-TSN-HLKYL--VN-------GETGIIAHLDKPLYLLGYLPKENR 246 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEET-T-EEEEE--TT-EEEEE--ET-------TEEEEEEE-SS--EEEEEETTTTE
T ss_pred ccccCchhceEEEEEecceeEEEEEEc-C-EEEEE-cCC-eEEEE--Ec-------CCcceEEEcCCceEEEEEEccCCE
Confidence 0001233333367788999975 4 44444 333 67663 22 222233322456777778776665
Q ss_pred EEEEeeCCCeEEEEeCCC
Q 046899 303 VFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~~ 320 (407)
++ ....|+.|..+.+..
T Consensus 247 ly-~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 247 LY-LIDRDGNVISYELDL 263 (443)
T ss_dssp EE-EE-TT--EEEEE--H
T ss_pred EE-EEECCCCEEEEEECH
Confidence 64 677888888887764
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.02 E-value=0.65 Score=40.80 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=79.7
Q ss_pred cccccCCCCCCCCCCCCc-----CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc----
Q 046899 167 NASKSGGNGDKPLESPSI-----GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---- 237 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---- 237 (407)
.+.......+.++..... +..+.+. -...+.+++|.+ +.++.|.. ....+.|+.++....+.....
T Consensus 107 ~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~ 181 (275)
T PF00780_consen 107 RLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSS 181 (275)
T ss_pred EEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEEeC-CceEEEecCCCCceEEeCccCCcch
Confidence 334444446666554332 3334443 347788999984 45777764 458888998776322211111
Q ss_pred ------cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee--eecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 238 ------HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH--KFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 238 ------~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
...++..+... ++.+|++- |..-.+.|.. +++.+ .+... ..+.++++ ..+||++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~-------G~~~r~~~i~W~-~~p~~~~~--~~pyli~~~-- 245 (275)
T PF00780_consen 182 FKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKN-------GEPSRKSTIQWS-SAPQSVAY--SSPYLIAFS-- 245 (275)
T ss_pred hhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCC-------CCcCcccEEEcC-CchhEEEE--ECCEEEEEC--
Confidence 11234444443 34555542 4444455554 33333 44443 35567777 446776433
Q ss_pred CCeEEEEeCCCCCccccccc
Q 046899 310 DGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 310 d~~i~vwd~~~~~~~~~~~~ 329 (407)
++.|.||++.+++.++.+..
T Consensus 246 ~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 246 SNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCEEEEEECcCCcEEEEEEC
Confidence 46799999999988887764
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.97 E-value=0.72 Score=43.18 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=27.9
Q ss_pred ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR 225 (407)
Q Consensus 186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 225 (407)
.+..+.-..+.+-++.|..+. .|+....||.+++||+.
T Consensus 72 ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 72 LLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCC
Confidence 333333233789999998865 46677789999999986
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.87 E-value=1.3 Score=39.98 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=64.4
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~ 274 (407)
.+.++... + ++++.|.....+.++..+........ ........++++.+-+ +++.++.++.+|.+.++.......
T Consensus 131 ~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~ 206 (321)
T PF03178_consen 131 YITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIP 206 (321)
T ss_dssp SEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-S
T ss_pred EEEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCc
Confidence 56666655 3 57888888888888866542211111 2223355688888886 446999999999999998763221
Q ss_pred CCC-CC-c---eeeecCCCCCEEEE---EEcC--CCCC-----EEEEeeCCCeEEEE
Q 046899 275 DGV-GS-P---IHKFEGHSAAVLCV---QWSP--DKSS-----VFGSSAEDGILNIW 316 (407)
Q Consensus 275 ~~~-~~-~---~~~~~~h~~~v~~v---~~~~--~~~~-----ll~s~~~d~~i~vw 316 (407)
... +. . ...+. ....|+++ .+.| .+.. .++-++.+|.|-+.
T Consensus 207 ~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 207 NSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp STTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 111 22 2 22333 34568888 5555 2222 23467788988843
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.82 E-value=0.27 Score=48.09 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=59.6
Q ss_pred cCEEEEEECCCCCcEEEEEe-----CCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------
Q 046899 195 DTVEDVQFCPSSAQEFCSVG-----DDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------ 261 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------ 261 (407)
..+...+++|+|....++.. .|. .|.+++.. +. ......+ .....-.|+| ++..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~--~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GV--AVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Cc--ceeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence 46778899999944444432 244 45555542 22 1111222 2377889999 77767666432
Q ss_pred ------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 262 ------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 262 ------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
+.+.+.++.. ++... .....|..++|||||.++.+.. ++.|.+
T Consensus 424 ~~~~~~gql~~~~vd~------ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 424 IRDPATGQLARTPVDA------SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred eccCCCceEEEEeccC------chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 2232233332 22221 2345799999999999885544 477777
No 367
>PHA02713 hypothetical protein; Provisional
Probab=95.62 E-value=0.41 Score=46.83 Aligned_cols=96 Identities=8% Similarity=0.019 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC------cEEEEeCCC-CCCCCCCCceeeecCCCCC
Q 046899 218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN------SIHMFDRRK-LTSDGVGSPIHKFEGHSAA 290 (407)
Q Consensus 218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg------~i~vwd~~~-~~~~~~~~~~~~~~~h~~~ 290 (407)
.+..||.++.+......+....... +++.. ++.+.+.|+.++ .+..||.++ .. +..+..+......
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~ 505 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA 505 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc
Confidence 4778888877632222221111111 22222 567777777542 467899886 33 6666666544433
Q ss_pred EEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCc
Q 046899 291 VLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGE 323 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~ 323 (407)
...+.+ ++. |++.||.|+ ++..||+.+.+-
T Consensus 506 ~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 506 LHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ceeEEE--CCE-EEEEeeecceeehhhcCcccccc
Confidence 333333 444 888999888 677777776543
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.60 E-value=0.14 Score=48.01 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=75.4
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEE-eCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF-DRR 270 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw-d~~ 270 (407)
........+.++|.| +.++. ..||.-.++.....+ ... .+....++|.+ .+ .+|+-...+.|.++ +..
T Consensus 30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r---~k~----~G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR---NKA----FGSGLSFVWSS-RN-RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTE---EEE----EEE-SEEEE-T-SS-EEEEE-TTS-EEEEETTE
T ss_pred CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCc---ccc----cCceeEEEEec-Cc-cEEEEECCCeEEEEEcCc
Confidence 344557899999999 66666 457888888733222 111 23445688987 54 46776778899996 333
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL 350 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 350 (407)
. .....++. ...+..+-. |..| ...+ ++.|.+||..+.+.+.++.... |..+.||++
T Consensus 99 ~-------~~~k~i~~-~~~~~~If~---G~LL-~~~~-~~~i~~yDw~~~~~i~~i~v~~--vk~V~Ws~~-------- 155 (443)
T PF04053_consen 99 N-------EVVKSIKL-PFSVEKIFG---GNLL-GVKS-SDFICFYDWETGKLIRRIDVSA--VKYVIWSDD-------- 155 (443)
T ss_dssp E--------TT------SS-EEEEE----SSSE-EEEE-TTEEEEE-TTT--EEEEESS-E---EEEEE-TT--------
T ss_pred c-------ccceEEcC-CcccceEEc---CcEE-EEEC-CCCEEEEEhhHcceeeEEecCC--CcEEEEECC--------
Confidence 2 33334432 123444433 7744 3444 4589999999998888877542 566777666
Q ss_pred eeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 351 LTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|+-.+ +..+.|.+.+
T Consensus 156 ----------g~~val~t-~~~i~il~~~ 173 (443)
T PF04053_consen 156 ----------GELVALVT-KDSIYILKYN 173 (443)
T ss_dssp ----------SSEEEEE--S-SEEEEEE-
T ss_pred ----------CCEEEEEe-CCeEEEEEec
Confidence 55555555 4477787775
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.45 E-value=0.68 Score=43.53 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=68.8
Q ss_pred EEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC----------
Q 046899 197 VEDVQFCPSSAQEFCSVGDDS----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN---------- 262 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg---------- 262 (407)
+...+++|++..++++-+..| .|+++|+.+++ .+..... ......+.|.+ ++..|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d~i~-~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPDGIE-NPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEEEEE-EEESEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCCccc-ccccceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence 446788999944444444444 49999999986 2322111 11223499999 656554443222
Q ss_pred -cEEEEeCCCCCCCCCCCceeeecCCCC--CEEEEEEcCCCCCEEEEeeCCC---eEEEEeCCCC
Q 046899 263 -SIHMFDRRKLTSDGVGSPIHKFEGHSA--AVLCVQWSPDKSSVFGSSAEDG---ILNIWDHEKI 321 (407)
Q Consensus 263 -~i~vwd~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~ll~s~~~d~---~i~vwd~~~~ 321 (407)
.|+.|.+.+.. .+-...+..... ....+..++++++|+++..... .+.+.|+...
T Consensus 202 ~~v~~~~~gt~~----~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQ----SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-G----GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCCh----HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 37888887632 121233333222 2678899999999887665544 4778888764
No 370
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.43 E-value=0.067 Score=31.43 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=27.6
Q ss_pred cCEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCC
Q 046899 195 DTVEDVQFCPSSA--QEFCSVGDDSCLILWDARSG 227 (407)
Q Consensus 195 ~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~ 227 (407)
+.|.+++|+|... .+|+-+-.-|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998664 68888888899999999953
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.41 E-value=1.5 Score=39.13 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=67.8
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCceeeeccc----------CcceEEEEecCCCCCEEEEE--eCCC-------cEEEEeC
Q 046899 209 EFCSVGDDSCLILWDARSGSTPAVKVEKAH----------NADIHCVDWNPHDVNLILTG--SADN-------SIHMFDR 269 (407)
Q Consensus 209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~l~~~~~~~~~l~tg--~~dg-------~i~vwd~ 269 (407)
.++-.+.+|.|+--|+.............- .+.-.-+++++..+++++.- +.+| .|-++|+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 444467889998888876552222221110 11223467776333333322 1122 4777888
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE-EeeCCCeEEEEeCCCCCcccccccC
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG-SSAEDGILNIWDHEKIGEKQDYGEL 330 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~-s~~~d~~i~vwd~~~~~~~~~~~~~ 330 (407)
.+ .+.+..+.. ..++.+|+.+.+.+-+|. ....++.+.+||..+++.+.++++.
T Consensus 277 ~t------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 277 KT------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TT------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CC------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 88 888888874 356889999988765553 4456899999999999888887653
No 372
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.38 E-value=0.071 Score=31.30 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=28.5
Q ss_pred CceEEEEEeCCCC--eEEEEeeCCCcEEEEeCcCC
Q 046899 84 GEVNRIRELPQNS--KIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 84 ~~v~~l~~~~~~~--~~l~tg~~dg~i~vwd~~~~ 116 (407)
|.|.+++|+|.++ ++|+-+-.-|.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 5789999998666 79999988899999999853
No 373
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.28 E-value=0.42 Score=46.53 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=74.2
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec--CCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN--PHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
...-+.-+.-+ ..-++-+....+.|||.+.+.......+ ...+.|..++|. | +++.+++.|..+.|.+|--....
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchh
Confidence 33444444444 3333344456799999998773222222 457889999994 5 77888888889999998642111
Q ss_pred ---CCCCCCceeee--cCCC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 274 ---SDGVGSPIHKF--EGHS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 274 ---~~~~~~~~~~~--~~h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
......++.++ ..|+ .+|.+..|.++|..+ .|+ ++.+.|+|-.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv--V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV--VGS-GNQLFVFDKW 156 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEE--EEe-CCEEEEECCC
Confidence 11114555554 2344 689999999999733 343 5789999854
No 374
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.4 Score=44.53 Aligned_cols=137 Identities=14% Similarity=0.144 Sum_probs=88.4
Q ss_pred ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC-------CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce
Q 046899 170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS-------AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI 242 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 242 (407)
+.....+.-.|+..|+.+....-|..- -+.|.|.. ...| .|-.+..|.--|.|-.... +.. ......+
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNK-i~v-~esKdY~ 560 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNK-IKV-VESKDYK 560 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCc-eee-eeehhcc
Confidence 555556666788889988888877654 57777753 1233 3444555655566643321 111 1122222
Q ss_pred EEEEecC---CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 243 HCVDWNP---HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 243 ~~l~~~~---~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
+--.|+. ....++|+|+..|-|++||.-. -.....+.+-...|..+..+.+|.++|||| ...+.+-|++
T Consensus 561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig------~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIG------KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred ccccccccccccCceEEEecCCCceeeehhhc------chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 2222221 1456999999999999999654 233445666778899999999999999887 4788888876
No 375
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.10 E-value=0.62 Score=40.02 Aligned_cols=126 Identities=11% Similarity=0.186 Sum_probs=73.3
Q ss_pred EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-CcceEEEEecCCCCCEEEEEeCCCcEEEEe
Q 046899 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADIHCVDWNPHDVNLILTGSADNSIHMFD 268 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 268 (407)
+.+-...+..|+|+|+...++++....+.|.-.+.. ++ .+..+.-. .+..-.|++.. ++.++++--.++.+.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--VLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--EEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 334455799999999875788888888998888864 55 34443222 34567888876 666666655689999999
Q ss_pred CCCCCCCCCCCceeeec-----CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 269 RRKLTSDGVGSPIHKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+......-.......+. .++..+-.++|.|.+..+++ +-...-..++.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNG 148 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEES
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEcc
Confidence 85422100011112221 24567999999999887874 45555566776654
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.79 E-value=2.4 Score=36.52 Aligned_cols=193 Identities=8% Similarity=0.073 Sum_probs=103.4
Q ss_pred eeEEEeeCCCc--eEEEEEeCCCCeEEEEeeCCC--cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899 75 KKFKTIIHPGE--VNRIRELPQNSKIVATHTDSP--DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAA 150 (407)
Q Consensus 75 ~~~~~~~h~~~--v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~ 150 (407)
...+..+|+.. ...+.|.. ++.++-+.+.-| .|+.+|+.+++......-....-. .| +.+++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg--EG-it~~~---------- 99 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG--EG-ITILG---------- 99 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E--EE-EEEET----------
T ss_pred EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc--ee-EEEEC----------
Confidence 45566677744 55787765 777877777666 699999998875543221111000 00 11110
Q ss_pred CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
+......-.++...++|..+.+.+.++.- .+.=..++. ++ ..|+.+.....|+++|..+.+
T Consensus 100 -------------d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~-- 160 (264)
T PF05096_consen 100 -------------DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFK-- 160 (264)
T ss_dssp -------------TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-S--
T ss_pred -------------CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc--CC-CEEEEECCccceEEECCcccc--
Confidence 00011122334445556666666666642 344466773 34 345555556789999988765
Q ss_pred ceeeec--ccCc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---------------CCCC
Q 046899 231 AVKVEK--AHNA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---------------HSAA 290 (407)
Q Consensus 231 ~~~~~~--~~~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------h~~~ 290 (407)
....+. .... .++-+.|- +|.+.|=.-....|...|..+ ++.+..+.. ...-
T Consensus 161 ~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t------G~V~~~iDls~L~~~~~~~~~~~~~~dV 232 (264)
T PF05096_consen 161 EVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET------GKVVGWIDLSGLRPEVGRDKSRQPDDDV 232 (264)
T ss_dssp EEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-------BEEEEEE-HHHHHHHTSTTST--TTS-
T ss_pred eEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC------CeEEEEEEhhHhhhcccccccccccCCe
Confidence 233222 2222 34556665 455555555666777777777 666554421 1356
Q ss_pred EEEEEEcCCCCCEEEEee
Q 046899 291 VLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~ 308 (407)
.+.||+.|....+++||-
T Consensus 233 LNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 233 LNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEeEeEeCCCCEEEEEeC
Confidence 899999999988988884
No 377
>PHA02713 hypothetical protein; Provisional
Probab=94.43 E-value=0.31 Score=47.62 Aligned_cols=103 Identities=6% Similarity=0.024 Sum_probs=53.9
Q ss_pred cEEEEEeCCC-----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--------------------
Q 046899 208 QEFCSVGDDS-----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN-------------------- 262 (407)
Q Consensus 208 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg-------------------- 262 (407)
.+.+.||.++ .+..||..+.+......+.........+.. ++.+.+.||.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccccc
Confidence 6777887654 488899887653221121111111112222 567778887653
Q ss_pred ---cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC------CeEEEEeCCC
Q 046899 263 ---SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED------GILNIWDHEK 320 (407)
Q Consensus 263 ---~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d------~~i~vwd~~~ 320 (407)
.+..||.++.. +..+..+....... +++.. ++. |++.||.+ ..+..||..+
T Consensus 430 ~~~~ve~YDP~td~----W~~v~~m~~~r~~~-~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 430 SSNKVIRYDTVNNI----WETLPNFWTGTIRP-GVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ccceEEEECCCCCe----EeecCCCCcccccC-cEEEE-CCE-EEEEeCCCCCCccceeEEEecCCC
Confidence 47778887633 44444332211111 22222 344 67777754 2466788776
No 378
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.40 E-value=0.69 Score=42.87 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=72.6
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC--------------------C-----------------CCceee
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG--------------------V-----------------GSPIHK 283 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--------------------~-----------------~~~~~~ 283 (407)
.|+.+.|.+ +...|++|...|.|.+|.....+..+ . ..|..-
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 478899998 77889999999999998643321110 0 123333
Q ss_pred ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc--c------CCCcccCCCCcCcchhccccceeeee
Q 046899 284 FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG--E------LKYPIIHPAYSSDMLDIETKLLTSIG 355 (407)
Q Consensus 284 ~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~s~d~~~~~~~~~~~~~ 355 (407)
+....++|++++.|.-| .+|.|..+|.+.|.|++....+..-. . ....++.+.| +++
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF-------------~vm 146 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF-------------SVM 146 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE-------------EEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE-------------EEE
Confidence 34457899999998666 56899999999999998766554311 1 1122333434 233
Q ss_pred EeeCcc---ceeeeEEEeeeEEEeecc
Q 046899 356 MHLIHG---RLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 356 ~~~~~~---~~i~~~~~d~~i~iwd~~ 379 (407)
.+.+.+ -.+++|...|.+.+|.+.
T Consensus 147 ~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 147 TLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp E-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 443322 246677778888888774
No 379
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.38 E-value=0.2 Score=44.51 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=96.0
Q ss_pred CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee---ecccCcce-EEEEecCC
Q 046899 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV---EKAHNADI-HCVDWNPH 250 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v-~~l~~~~~ 250 (407)
++.+.|+...+.+.++.- .. |.-.-|.++.-|.+-+.||++.-..+....++.... +..-..++ ..-.+..
T Consensus 119 SVtVVDl~~~kvv~ei~~--PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~- 193 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDT--PG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR- 193 (342)
T ss_dssp EEEEEETTTTEEEEEEEG--TS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-
T ss_pred eEEEEECCCCceeeeecC--CC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-
Confidence 344556666666555532 12 222335444568888899999999998543221111 11112222 2223333
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC----------CCCEEEEEEcCCCCCEEEEee--C-----C--C
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH----------SAAVLCVQWSPDKSSVFGSSA--E-----D--G 311 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h----------~~~v~~v~~~~~~~~ll~s~~--~-----d--~ 311 (407)
.+..++--+.+|.|+-.|+.... .+....+..- .+.-.-+++++...+|++.-- . | .
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~----~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDS----AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSS----EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred CCCeEEEEecCCEEEEEeccCCc----ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 34445556889999998887622 1222222210 112234566665544443221 1 1 2
Q ss_pred eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE-eeeEEEeeccccccCChHHHH
Q 046899 312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMIDLIYRPEEEVL 390 (407)
Q Consensus 312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~~~~~~~~~~~~ 390 (407)
.|-++|+.+.+++.+++-. .++.++..|.| ....+++.+. ++.|.|||.. +++.+
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd-----------------~~P~L~~~~~~~~~l~v~D~~------tGk~~ 325 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQD-----------------DKPLLYALSAGDGTLDVYDAA------TGKLV 325 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESS-----------------SS-EEEEEETTTTEEEEEETT------T--EE
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccC-----------------CCcEEEEEcCCCCeEEEEeCc------CCcEE
Confidence 4777788888887776632 23444444444 2445555544 6799999998 67766
Q ss_pred HHHh
Q 046899 391 AELD 394 (407)
Q Consensus 391 ~~~~ 394 (407)
+++.
T Consensus 326 ~~~~ 329 (342)
T PF06433_consen 326 RSIE 329 (342)
T ss_dssp EEE-
T ss_pred eehh
Confidence 5554
No 380
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.27 E-value=1 Score=42.76 Aligned_cols=121 Identities=13% Similarity=0.260 Sum_probs=76.3
Q ss_pred ecccCEEEEEECCCC----CcEEEEEeCCCcEEEEEcCCCCC---Cceeeecc-cCc--c--eEEEEecCCCCCEEEEEe
Q 046899 192 GHEDTVEDVQFCPSS----AQEFCSVGDDSCLILWDARSGST---PAVKVEKA-HNA--D--IHCVDWNPHDVNLILTGS 259 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~-~~~--~--v~~l~~~~~~~~~l~tg~ 259 (407)
+.-+.|..+.|.|-+ +.+| +......|.+|.+..... ........ ... + -..+.|+| ....|++-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceE-EEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEe
Confidence 344568999999863 3444 455678999999863221 01111111 111 1 13578999 777777666
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 260 ~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
....-.+++++... ......++ -.+.|.|.+|.+||.+|++..+..=.-.+||=.
T Consensus 132 ~~dvSV~~sV~~d~----srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDS----SRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCC----ceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 65555577777632 23333454 467899999999999987776665566788844
No 381
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.24 E-value=4.7 Score=40.07 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=69.9
Q ss_pred cEEEEEeCCCcEEEEEcCCC-----------CC-------CceeeecccCcceEEEEec--CCCCCEEEEEeCCCcEEEE
Q 046899 208 QEFCSVGDDSCLILWDARSG-----------ST-------PAVKVEKAHNADIHCVDWN--PHDVNLILTGSADNSIHMF 267 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~-----------~~-------~~~~~~~~~~~~v~~l~~~--~~~~~~l~tg~~dg~i~vw 267 (407)
..|+.+..||.|.+|.+.+- .. .+...+ .-...+++++++ . ..++||+++....|.||
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceEEEEecCCceEEEE
Confidence 68999999999999976320 00 011111 234578999998 6 78899999988888888
Q ss_pred eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC-----CCEEEEeeCCCeEEEEeCC
Q 046899 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK-----SSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-----~~ll~s~~~d~~i~vwd~~ 319 (407)
-....... ....... .|..-|-+|.|-++. .-.+++++-.|.+.+|++.
T Consensus 193 af~l~~~r--~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDER--FYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEeccccc--ccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 66542110 1111111 256678899997654 1145678889999999883
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.20 E-value=0.42 Score=43.14 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=72.3
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
...++|++|+-. .+ . |+.+. ++.|.+|++...+.-...........+.++... +++++.|+....+.++..+.
T Consensus 86 ~~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 86 EVKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEET
T ss_pred eecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEc
Confidence 357889999866 34 4 44443 489999999877711122222233466666664 46999999988888875543
Q ss_pred CCCCCCCCceeeec--CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 272 LTSDGVGSPIHKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 272 ~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
. ...+..+. .....++++.|-+++. .++.+..+|.+.++....
T Consensus 159 ~-----~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 159 E-----NNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp T-----TE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred c-----CCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 1 22233222 2345689999986766 446899999999998863
No 383
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.20 E-value=3.6 Score=37.69 Aligned_cols=143 Identities=16% Similarity=0.216 Sum_probs=77.3
Q ss_pred ccCEEEEEECCCCCcEEEE-EeCC---CcEEEEEcCCCCCCceeeecccCcce---EEEEec-CCCCCEEEEEeCCCcEE
Q 046899 194 EDTVEDVQFCPSSAQEFCS-VGDD---SCLILWDARSGSTPAVKVEKAHNADI---HCVDWN-PHDVNLILTGSADNSIH 265 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v---~~l~~~-~~~~~~l~tg~~dg~i~ 265 (407)
...+..+.|.+++..+++. ...+ ..+.+.|..++....... ......| ....+. +.+..++.....+|.-+
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 4578899999988313333 2332 347778888776322222 2222222 244543 53566666666788655
Q ss_pred EEeCCCCCCCCCCCceeeecCCCCCEEE-EEEcCCCCCEEEEeeCCC----eEEEEeCCCCCcccccccCCCcccCCCCc
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG----ILNIWDHEKIGEKQDYGELKYPIIHPAYS 340 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~ll~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 340 (407)
+|-+... +.....+....-.|.. +.+++++..|+.++..++ .+..-++..+..+..+......-..+.||
T Consensus 262 ly~~~~~-----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 262 LYLYDLD-----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp EEEEETT-----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred EEEEccc-----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 5544432 2345566655666755 678888887877777633 55555666224444444333322467777
Q ss_pred Cc
Q 046899 341 SD 342 (407)
Q Consensus 341 ~d 342 (407)
|+
T Consensus 337 pd 338 (353)
T PF00930_consen 337 PD 338 (353)
T ss_dssp TT
T ss_pred CC
Confidence 77
No 384
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.09 E-value=5.1 Score=37.41 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=71.0
Q ss_pred CCCeEEEEeeCCCcEEEEeCcCCCCcc--cc------------cCcCCCCCCC---------CCcEEEEecccccc----
Q 046899 94 QNSKIVATHTDSPDVLIWDVEAQPNRH--AV------------LGAADSHPDL---------DQSVVLWSIQDHVS---- 146 (407)
Q Consensus 94 ~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~------------~~~~~~~~~~---------d~~i~~w~~~~~~~---- 146 (407)
++.+.|++|+..|.+||++........ .+ ... .+++.. -+.+.+|.+.....
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G-~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECG-KFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEec-cccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 356789999999999999986543111 00 001 111111 45666666632110
Q ss_pred ------------ccccCCCCCcccccCCCC--CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEE
Q 046899 147 ------------ALAAEPGSAKSTASGGAN--SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212 (407)
Q Consensus 147 ------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s 212 (407)
.+.........-++|... ..+...+-||.+.+++-+.......+.. ----..+.|.+.. ..|++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t-Dsfvt 191 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT-DSFVT 191 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC-CEEEE
Confidence 011111112222333333 4455677888888887665443333332 2222356777776 67899
Q ss_pred EeCCCcEEEEEcC
Q 046899 213 VGDDSCLILWDAR 225 (407)
Q Consensus 213 ~~~dg~i~iwd~~ 225 (407)
++.+..|..|...
T Consensus 192 ~sss~~l~~Yky~ 204 (418)
T PF14727_consen 192 ASSSWTLECYKYQ 204 (418)
T ss_pred ecCceeEEEecHH
Confidence 9988899988764
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.07 E-value=0.077 Score=52.34 Aligned_cols=120 Identities=23% Similarity=0.300 Sum_probs=74.5
Q ss_pred EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCC--C-ceeeecccCcceEEEEecCC--CCCEEEEEeCCC
Q 046899 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GST--P-AVKVEKAHNADIHCVDWNPH--DVNLILTGSADN 262 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~--~-~~~~~~~~~~~v~~l~~~~~--~~~~l~tg~~dg 262 (407)
.++..+.|..++|-......+. -.-|.+.+||+.. ++- . .+.........+.-+.|.|. +.-++..+..++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4456677777777322111111 2336778888764 221 0 12222333455566777663 345667777888
Q ss_pred cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEE-----------EcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQ-----------WSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~-----------~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
.|++..... ....-+++|...+..++ .+|||. +||+.+.||.+++|.+.
T Consensus 206 ~i~lL~~~r-------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 206 EIRLLNINR-------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeEeeech-------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence 999887765 33355666877776665 478998 66899999999988765
No 386
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.07 E-value=2.5 Score=37.58 Aligned_cols=124 Identities=14% Similarity=0.242 Sum_probs=63.8
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
-.+.+..+..+++| .++++++......-||--... -..........|..|.|.| ++.+.+++ ..|.|++=+....
T Consensus 143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTE
T ss_pred CcceeEeEEECCCC-cEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCC
Confidence 44678888889999 788887776666788865433 2334445578899999999 77766654 7888888772110
Q ss_pred CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899 273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325 (407)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~ 325 (407)
.+. =.+++..+..-.-.+.+++|.+++. ++|+|+ .|.+ +.....++.-+
T Consensus 218 ~~~-w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~ 266 (302)
T PF14870_consen 218 GET-WSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQ 266 (302)
T ss_dssp EEE-E---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-E
T ss_pred ccc-cccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccce
Confidence 000 0011111212233489999999877 666665 5544 44445544433
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.96 E-value=0.35 Score=44.40 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCCcCceeeEeec---ccCEEEEEECCCCCcEEEEEeC--------------------CCcEEEEEcCCCC
Q 046899 172 GGNGDKPLESPSIGARGKYLGH---EDTVEDVQFCPSSAQEFCSVGD--------------------DSCLILWDARSGS 228 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~ 228 (407)
..|.+.++|.++.+........ ...-..+-|.|.. +.++|+.. ..++++||+.+.+
T Consensus 155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 3444556666666666655432 2234567788877 77877643 4679999999888
Q ss_pred CCceeeeccc--CcceEEEEe--cCCCCCE-EEEEeCCCcEEEEeCCCCCCCCCCCceeeec-----------------C
Q 046899 229 TPAVKVEKAH--NADIHCVDW--NPHDVNL-ILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-----------------G 286 (407)
Q Consensus 229 ~~~~~~~~~~--~~~v~~l~~--~~~~~~~-l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------------~ 286 (407)
..+.+.-- ......|.| +| +..+ ++.+-..++|-.|-......-. .+.+-++. .
T Consensus 234 --~~Q~idLg~~g~~pLEvRflH~P-~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 234 --LLQTIDLGEEGQMPLEVRFLHDP-DANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp --EEEEEES-TTEEEEEEEEE-SST-T--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-E
T ss_pred --EeeEEecCCCCCceEEEEecCCC-CccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCccccccccccccc
Confidence 45544322 233556666 45 3333 3333334444444321100000 01122221 1
Q ss_pred CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 287 h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
-..-|++|..|.|.++|.+++-.+|.||.||+......
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 13468999999999999999999999999999975544
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.93 E-value=3.9 Score=35.56 Aligned_cols=77 Identities=8% Similarity=0.163 Sum_probs=53.0
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-eeccc-------CcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-VEKAH-------NADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~-------~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
......++|.|.+ ..|..+-+-.-+.||.+......... ....+ -..|.++.|++..+.+++-+..++.+.
T Consensus 180 N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~ 258 (316)
T COG3204 180 NKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLL 258 (316)
T ss_pred CcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEE
Confidence 4567789999998 56777777777888877643311111 11111 235678899987888888888889888
Q ss_pred EEeCCC
Q 046899 266 MFDRRK 271 (407)
Q Consensus 266 vwd~~~ 271 (407)
-.|..-
T Consensus 259 Evd~~G 264 (316)
T COG3204 259 EVDLSG 264 (316)
T ss_pred EEecCC
Confidence 888874
No 389
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.74 E-value=0.26 Score=45.25 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=58.0
Q ss_pred CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCC-------
Q 046899 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGH------- 287 (407)
Q Consensus 216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h------- 287 (407)
.+.+.++|+.+++ ...+......+....|+| +++.++-.. ++.|.+.+... +...+ +..+-
T Consensus 22 ~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~------~~~~~lT~dg~~~i~nG~ 90 (353)
T PF00930_consen 22 KGDYYIYDIETGE---ITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLAT------GQETQLTTDGEPGIYNGV 90 (353)
T ss_dssp EEEEEEEETTTTE---EEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTT------SEEEESES--TTTEEESB
T ss_pred ceeEEEEecCCCc---eEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCC------CCeEEeccccceeEEcCc
Confidence 4678999999876 333333356788899999 889888876 67899998765 21111 11110
Q ss_pred ---------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 288 ---------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 288 ---------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
-+.-..+-||||+++|+..--.+..|+.+.+.
T Consensus 91 ~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 91 PDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp --HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred cceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 11235688999999886566666667766554
No 390
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=1.1 Score=41.88 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=54.1
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC---CCceeeec-----------CCCCCEEEEEEcCCC---CCE
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV---GSPIHKFE-----------GHSAAVLCVQWSPDK---SSV 303 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~---~~~~~~~~-----------~h~~~v~~v~~~~~~---~~l 303 (407)
.|..+..++ .|..++..|.+|.+.++=.+....++. +++.-..+ ...-.+..++|||+. .+|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 567888899 888999889999887765444322111 22211111 112357788999986 445
Q ss_pred EEEeeCCCeEEEEeCCCCCcc
Q 046899 304 FGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 304 l~s~~~d~~i~vwd~~~~~~~ 324 (407)
..-+.|++||+||+...+.+
T Consensus 184 -~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 -VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred -EEEecCcEEEEEecCCcchh
Confidence 46677999999999976655
No 391
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.45 E-value=2.2 Score=41.15 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc--eEEEEecCC-CCCEEEEEe---------CCCcEEEEeCCCCCCC
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD--IHCVDWNPH-DVNLILTGS---------ADNSIHMFDRRKLTSD 275 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~l~~~~~-~~~~l~tg~---------~dg~i~vwd~~~~~~~ 275 (407)
..++.++.++.|.-+|.++++ ........... -..+.-+|. .+..++.++ .+|.+..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T---- 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET---- 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC----
Confidence 357777889999999999998 34333222110 001111110 123444443 367889999988
Q ss_pred CCCCceeeecCCCC--------------------CE-EEEEEcCCCCCEEEEeeCCC------------------eEEEE
Q 046899 276 GVGSPIHKFEGHSA--------------------AV-LCVQWSPDKSSVFGSSAEDG------------------ILNIW 316 (407)
Q Consensus 276 ~~~~~~~~~~~h~~--------------------~v-~~v~~~~~~~~ll~s~~~d~------------------~i~vw 316 (407)
++.+..+..... .| ...++.+.+..++ .++.++ .|.-.
T Consensus 185 --G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Al 261 (488)
T cd00216 185 --GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVAL 261 (488)
T ss_pred --CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEE
Confidence 777766643211 01 1234444445454 555454 78888
Q ss_pred eCCCCCcccccc
Q 046899 317 DHEKIGEKQDYG 328 (407)
Q Consensus 317 d~~~~~~~~~~~ 328 (407)
|..+++..=.+.
T Consensus 262 d~~tG~~~W~~~ 273 (488)
T cd00216 262 DADTGKVKWFYQ 273 (488)
T ss_pred cCCCCCEEEEee
Confidence 999887765443
No 392
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.39 E-value=3.4 Score=41.59 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=54.0
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC---CCc--e-eee--------cCCCCCEEEEEEcCCC---CC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV---GSP--I-HKF--------EGHSAAVLCVQWSPDK---SS 302 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~---~~~--~-~~~--------~~h~~~v~~v~~~~~~---~~ 302 (407)
-.|..|..+| +|.+++..|..|.+.+.=.+.....+. ++. . +++ ..+...|..+.|||.+ .+
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999 999999998877655544433221110 111 1 111 1245689999999974 66
Q ss_pred EEEEeeCCCeEEEEeCCCCCc
Q 046899 303 VFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~~~~~ 323 (407)
|+ .-..|+++|+||+.....
T Consensus 164 l~-vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LV-VLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EE-EEecCCEEEEEecCCCCC
Confidence 64 667799999999986443
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.39 E-value=4.7 Score=39.59 Aligned_cols=103 Identities=14% Similarity=0.205 Sum_probs=58.6
Q ss_pred cEEEEEeCC------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc-----EEEEeCCCCCCCC
Q 046899 208 QEFCSVGDD------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS-----IHMFDRRKLTSDG 276 (407)
Q Consensus 208 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~-----i~vwd~~~~~~~~ 276 (407)
.+.+.||.+ .++..||..+........+..-..... ++.- ++.+.+.||.|+. |..||.++..
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~--- 502 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ--- 502 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCc---
Confidence 678888854 457889988877432222221122222 3332 5788888888873 7778888743
Q ss_pred CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-----eEEEEeCCC
Q 046899 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----ILNIWDHEK 320 (407)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-----~i~vwd~~~ 320 (407)
+..+..+......+-.+. -+..+++.|+.|| +|..||..+
T Consensus 503 -W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 503 -WTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred -eeEcccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCC
Confidence 445544443333333333 2333778888775 455565554
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.39 E-value=2.2 Score=35.69 Aligned_cols=106 Identities=7% Similarity=0.097 Sum_probs=69.9
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEE--cCCCCCC---ceeeecc----cCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWD--ARSGSTP---AVKVEKA----HNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~~---~~~~~~~----~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
.-+.++|+.+...+.+.-+.+-.|.-|| ..++... .+..++. .....-.++.+- +|++.++.-..|+|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEE
Confidence 3467889877755666667788887777 4444311 1111111 011122345555 7888888888899999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC-CCCEEEEee
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD-KSSVFGSSA 308 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~ll~s~~ 308 (407)
+|..+ ++.+.+++-....|++.+|--. -..+.+|+.
T Consensus 238 ~dp~t------GK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 238 VDPTT------GKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ECCCC------CcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 99999 9999999988999999999643 233344443
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=0.9 Score=46.49 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=73.7
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~ 274 (407)
....++.|+|.=+...+.+..|+.|++.-+...... ... .......++++|+| .|..++.|-..|++.-|...-
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~-v~s-~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l--- 229 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN-VTS-FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL--- 229 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhh-hcc-cCcccceeeEEecc-ccceeeEecCCCeEEEeeccc---
Confidence 345678899976667888889999999887655421 222 24456789999999 999999999999999997653
Q ss_pred CCCCCceeeecC----CCCCEEEEEEcCCCCCEEEE
Q 046899 275 DGVGSPIHKFEG----HSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 275 ~~~~~~~~~~~~----h~~~v~~v~~~~~~~~ll~s 306 (407)
+....+.+ ....|.+|.|-....++++-
T Consensus 230 ----eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 230 ----EIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ----ceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 32333322 14679999998877766433
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.96 E-value=1.6 Score=37.57 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=68.8
Q ss_pred EEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-----CCcEEEEeCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSC-LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-----DNSIHMFDRR 270 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-----dg~i~vwd~~ 270 (407)
-..|+|+|.-+.-++.+-.-|+ ..+||....+.+.........-.--.=.|+| ++.+|+..-. -|.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 3457888877666666655554 6788988777443322111111111236889 8998876533 3789999998
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF 304 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll 304 (407)
.- .+.+.++..|.-.-..+.|.+||+.+.
T Consensus 149 ~~-----fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 149 EG-----FQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred cc-----cceecccccCCcCcceeEEecCCcEEE
Confidence 63 577888988988889999999999654
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.89 E-value=3.9 Score=35.23 Aligned_cols=119 Identities=13% Similarity=0.057 Sum_probs=74.0
Q ss_pred CEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
-...+.|..++ .++-+.+.-| .|+.+|+.+++. ..... ...----.++.. +..+...-=.++...+||..+
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~--~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t- 119 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKV--LQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSE--EEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT-
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcE--EEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc-
Confidence 44578886767 7788888766 699999999872 22211 111122234443 334555556688999999998
Q ss_pred CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
.+++.++.- .+.=+.++ .++..|+.|- ....+.++|..+.+....+..
T Consensus 120 -----l~~~~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 120 -----LKKIGTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp -----TEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-
T ss_pred -----ceEEEEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEE
Confidence 788888864 34557777 4667676444 467899999998877766543
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.75 E-value=1.4 Score=40.83 Aligned_cols=85 Identities=12% Similarity=0.196 Sum_probs=59.5
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC-EEEEEEcCC-----------------
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA-VLCVQWSPD----------------- 299 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~----------------- 299 (407)
....+.+++.+| ++++.|+...-|.|.++|+.. +..++.+++..+. +.=+.....
T Consensus 306 ~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~------~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 306 SKREGESICLSP-SGRLAAVTDSLGRVLLIDVAR------GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred CCceEEEEEECC-CCCEEEEEcCCCcEEEEECCC------ChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 345678999999 889999888889999999998 7888888775432 111111111
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 300 KSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 300 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
..+|++=.-.-|.|.||.++.+.++..+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 123444556689999999999887766543
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=0.39 Score=48.88 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=76.8
Q ss_pred CEEEEEECCCCCc-EEEEEeCCCcEEEEEcCCCCCCc---ee------eecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 196 TVEDVQFCPSSAQ-EFCSVGDDSCLILWDARSGSTPA---VK------VEKAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 196 ~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~---~~------~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
++..+...+++.. .++..+.+-.|..||+++-.... .. ..........++.|+|.=....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555555666522 23333344578999998754211 11 11122334578899995556677888899999
Q ss_pred EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+..+.... ..+..+. -...+++++|+|.|.++ +.|-..|++.-|-..-
T Consensus 182 V~~~~~~~-----~~v~s~p-~t~~~Tav~WSprGKQl-~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQLA-----QNVTSFP-VTNSQTAVLWSPRGKQL-FIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhh-----hhhcccC-cccceeeEEecccccee-eEecCCCeEEEeeccc
Confidence 99887632 2333443 35678999999999987 5899999999987653
No 400
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.52 E-value=4.5 Score=37.33 Aligned_cols=109 Identities=13% Similarity=0.208 Sum_probs=56.8
Q ss_pred cCEEEEEECCCCCcEEEEEe-----------CCC-cEEEEEcCCC--CCCceeeecccCcceEEEEecCCCCCEEEEEeC
Q 046899 195 DTVEDVQFCPSSAQEFCSVG-----------DDS-CLILWDARSG--STPAVKVEKAHNADIHCVDWNPHDVNLILTGSA 260 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~ 260 (407)
.....|+|.++| +++++-. ..+ .|.+++-..+ .......+.........+++.+ ++ +++ +..
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCC
Confidence 345688999999 6666642 223 7777765432 2111223322334557899988 76 444 444
Q ss_pred CCcEEEEeCCCCC-CCCCCCce-eeecC----CCCCEEEEEEcCCCCCEEEEee
Q 046899 261 DNSIHMFDRRKLT-SDGVGSPI-HKFEG----HSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 261 dg~i~vwd~~~~~-~~~~~~~~-~~~~~----h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
....++.|..... .++..+.+ ..+.. +......++|.|+|. |+++-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 4433344543211 00001222 22322 234578999999997 444444
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.39 E-value=4.8 Score=34.90 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=65.6
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEe-CCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD-RRKLTS 274 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd-~~~~~~ 274 (407)
.+...++++++..+.+....++.-.+|-...+.. ..... ....+..-.|++ ++...+....+...+++. .....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~--~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~- 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVL--TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT- 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeec--cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc-
Confidence 6788999999943433332333444444433331 12222 233678889999 677776666666666663 22211
Q ss_pred CCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEe--eCCCeEEEEeCC
Q 046899 275 DGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSS--AEDGILNIWDHE 319 (407)
Q Consensus 275 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~--~~d~~i~vwd~~ 319 (407)
...+..- ..-...|+.+++||||.++.+.. ..++.|.+=-+.
T Consensus 100 ---~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 100 ---GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ---ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 2222111 11112899999999999875544 235677766544
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.26 E-value=2.1 Score=42.04 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=63.6
Q ss_pred EEEEECCCCCcEEEEEeCC------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc-----EEE
Q 046899 198 EDVQFCPSSAQEFCSVGDD------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS-----IHM 266 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~-----i~v 266 (407)
.+++... + .++++||.| ..+..||.++.+......+....... +++.. ++.+.|+||.||. |-.
T Consensus 326 ~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 326 VGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred ccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEE
Confidence 4455544 3 688999988 35778898887742222222222221 22222 6788999999874 777
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC------eEEEEeCCCC
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG------ILNIWDHEKI 321 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~------~i~vwd~~~~ 321 (407)
||.++.. +..+..+.......-.+.+ +|. |.+.||.|+ ++..||..+.
T Consensus 401 YDp~~~~----W~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 401 YDPVTNK----WTPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred ecCCCCc----ccccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEcCCCC
Confidence 8887644 4555444332222222222 444 778888554 4567777664
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.21 E-value=1.3 Score=40.78 Aligned_cols=145 Identities=13% Similarity=0.030 Sum_probs=70.3
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecc--cCEEEEEE--CCCCCcEEEEEeCCCcEEEEEc-CCCCCCcee-
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHE--DTVEDVQF--CPSSAQEFCSVGDDSCLILWDA-RSGSTPAVK- 233 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~v~~l~~--~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~- 233 (407)
.|-....+..+.....+.+||..+.+.++++.-.. .....|.| .|+...-|+.+....+|..|-- ..++....+
T Consensus 208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 208 KGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp T---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred cCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence 33333334445567889999999999999887432 23556666 4555445666666666666544 333211111
Q ss_pred -ee-----------------cccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCceeeecC--------
Q 046899 234 -VE-----------------KAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIHKFEG-------- 286 (407)
Q Consensus 234 -~~-----------------~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~-------- 286 (407)
.+ ..-..-|+.|..|. |.++|...+ .+|.|+.||+..+.. .+.+.++.-
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~---Pkl~gqv~lGG~~~~~~ 363 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFN---PKLVGQVFLGGSIRKGD 363 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS----EEEEEEE-BTTTT-B-
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCC---CcEEeEEEECcEeccCC
Confidence 11 11134578899999 667776554 589999999987643 222222210
Q ss_pred --------CCCCEEEEEEcCCCCCEEEEee
Q 046899 287 --------HSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 287 --------h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
-.+...-|+.|-||++|.+|.|
T Consensus 364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS------S----EEE-TTSSEEEEE--
T ss_pred CccccccccCCCCCeEEEccCCeEEEEEee
Confidence 1123467888889998887766
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.18 E-value=7.5 Score=37.30 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=45.1
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCC
Q 046899 199 DVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRR 270 (407)
Q Consensus 199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~ 270 (407)
.+.|+|.. .+|+.-.....-.+++++..... ++.-....+-|.|.+|.+ ||+.|+.+ +..=.-++||-.
T Consensus 117 GCVWHPk~-~iL~VLT~~dvSV~~sV~~d~sr-VkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 117 GCVWHPKK-AILTVLTARDVSVLPSVHCDSSR-VKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cccccCCC-ceEEEEecCceeEeeeeeeCCce-EEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence 46799988 56666655555566777765532 333335667899999999 66665544 434456789854
No 405
>PHA03098 kelch-like protein; Provisional
Probab=91.79 E-value=9.1 Score=37.39 Aligned_cols=104 Identities=5% Similarity=0.094 Sum_probs=52.7
Q ss_pred cEEEEEeCC------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--------cEEEEeCCCCC
Q 046899 208 QEFCSVGDD------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--------SIHMFDRRKLT 273 (407)
Q Consensus 208 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--------~i~vwd~~~~~ 273 (407)
.+++.||.+ ..+..||..+.+............. .++... ++.+++.|+.++ .+.+||..+..
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 677777632 4588999887653222111111111 122222 456777776432 38889987632
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI 321 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 321 (407)
+..+..+.........+.+ ++. |++.||.+ +.|.+||+.+.
T Consensus 468 ----W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 468 ----WTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ----eeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCC
Confidence 3333322211111122222 444 66677654 46788887764
No 406
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.74 E-value=8.2 Score=33.51 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=109.1
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCc-EEEEeCcCCCCccccc--------CcCCCCCCCCCcEEEEeccccccccccC
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPD-VLIWDVEAQPNRHAVL--------GAADSHPDLDQSVVLWSIQDHVSALAAE 151 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~--------~~~~~~~~~d~~i~~w~~~~~~~~~~~~ 151 (407)
.-...-..|+|+|..+.-++-+-.-|+ ..++|.+.......+. +|.-+.++. .+. |-.+
T Consensus 65 ~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG--~~L-YATE--------- 132 (366)
T COG3490 65 ALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG--RLL-YATE--------- 132 (366)
T ss_pred ecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC--cEE-Eeec---------
Confidence 344556678888877777777766665 5678888776544332 232222221 110 0000
Q ss_pred CCCCcccccCCCCCccccccCCCCCCCCCCC-CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEE---------
Q 046899 152 PGSAKSTASGGANSKNASKSGGNGDKPLESP-SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLIL--------- 221 (407)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~i--------- 221 (407)
.-.-.+.|.|-+||.. ..+.+..+..|.-.-..+.+.++| ..++.+. |-|..
T Consensus 133 ---------------ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdfgR~~l 194 (366)
T COG3490 133 ---------------NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDFGRTEL 194 (366)
T ss_pred ---------------CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCC-cEEEEeC--CceecccccCcccc
Confidence 0001223334444443 234455666666666788888998 5555543 33333
Q ss_pred -----------EEcCCCCCCceeeec--ccCcceEEEEecCCCCCEEEEEeCCCcE-----EEEeCCCCCCCCCCCceee
Q 046899 222 -----------WDARSGSTPAVKVEK--AHNADIHCVDWNPHDVNLILTGSADNSI-----HMFDRRKLTSDGVGSPIHK 283 (407)
Q Consensus 222 -----------wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~dg~i-----~vwd~~~~~~~~~~~~~~~ 283 (407)
-|..+++.....++. .+.-.|..++..+ +++..+.+-..|-- .+=-.+. ++++.-
T Consensus 195 NldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~------g~~l~~ 267 (366)
T COG3490 195 NLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRK------GEPLEF 267 (366)
T ss_pred chhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccC------CCcCcc
Confidence 333333311111111 2334567777777 66655554433310 0000011 233333
Q ss_pred ecC-------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899 284 FEG-------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD 326 (407)
Q Consensus 284 ~~~-------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 326 (407)
+.. ....|-+|+.+.+...+.+|+-..+..-+||..++..+..
T Consensus 268 ~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 268 LDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 321 2346788888877776766777788889999999876543
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.50 E-value=0.11 Score=51.34 Aligned_cols=123 Identities=11% Similarity=0.164 Sum_probs=75.2
Q ss_pred CEEEEEECC---CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEE-----------ecCCCCCEEEEEeCC
Q 046899 196 TVEDVQFCP---SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD-----------WNPHDVNLILTGSAD 261 (407)
Q Consensus 196 ~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~-----------~~~~~~~~l~tg~~d 261 (407)
.+.-+.|.| .. .++..+-.++.|++-.+.... ...+.+|...+..++ .+| ||..|+.+..|
T Consensus 182 ~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~---~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~d 256 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRAL---RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISD 256 (1283)
T ss_pred Ccceeeeccccccc-ceeeeccCCCceeEeeechHH---HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecC
Confidence 345555655 33 466677778888887776544 233445665443332 578 99999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeeecCCC-CCEEEEEEcCCC---------CCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 262 NSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSPDK---------SSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 262 g~i~vwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~---------~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
|.+++|.+.-..... ..++...+.|+ .+-.|.-++.+. .++|-+......+++|.....+++
T Consensus 257 G~v~f~Qiyi~g~~~-~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIV-HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred Cccceeeeeeecccc-HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999888765422111 35666777776 444444454321 123323334566889988777766
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.25 E-value=1.9 Score=36.05 Aligned_cols=110 Identities=9% Similarity=0.039 Sum_probs=65.0
Q ss_pred EEEEEeCCCCeEEEEeeCCCcEEEEe--CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899 87 NRIRELPQNSKIVATHTDSPDVLIWD--VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN 164 (407)
Q Consensus 87 ~~l~~~~~~~~~l~tg~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (407)
+.++|..+...+..+-+.+-+|.-|| ..++... ..-.++|++.....-...|++...-..|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------------nr~~i~dlrk~~~~e~~~PDGm~ID~eG--- 223 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------------NRKVIFDLRKSQPFESLEPDGMTIDTEG--- 223 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCccccc--------------CcceeEEeccCCCcCCCCCCcceEccCC---
Confidence 45666654444555556666676676 3333211 1223455554322222333333332223
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV 213 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~ 213 (407)
...++.-+.+++..+|..+++.+.+++-....|+|++|--..-.+|++.
T Consensus 224 ~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 224 NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 3356677788888899999999999998899999999975432344444
No 409
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.22 E-value=2.2 Score=34.47 Aligned_cols=32 Identities=19% Similarity=0.490 Sum_probs=27.0
Q ss_pred CCEEEEEEcCC-----CCCEEEEeeCCCeEEEEeCCC
Q 046899 289 AAVLCVQWSPD-----KSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 289 ~~v~~v~~~~~-----~~~ll~s~~~d~~i~vwd~~~ 320 (407)
..|.+++|||. ++.+||....++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47999999984 456889999999999998764
No 410
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.77 E-value=11 Score=33.05 Aligned_cols=147 Identities=6% Similarity=0.031 Sum_probs=83.2
Q ss_pred CccccccCCCCCCCCCCC-CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee---------
Q 046899 165 SKNASKSGGNGDKPLESP-SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV--------- 234 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------- 234 (407)
..++.|+.+| +.+++.. ........ +...|..+...|+- +.|++-+ |+.+.++++..........
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 3456666666 7777762 22222222 33349999999977 4555543 5999999998765322110
Q ss_pred ---ecccCcceEEEE-ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-CceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 235 ---EKAHNADIHCVD-WNPHDVNLILTGSADNSIHMFDRRKLTSDGVG-SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 235 ---~~~~~~~v~~l~-~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
.......+...+ -....+...+.......|.+|........ . +..+++.- ...+.+++|.++ .+ +.|.
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~--f~~~~ke~~l-p~~~~~i~~~~~--~i-~v~~- 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS--FSKLLKEISL-PDPPSSIAFLGN--KI-CVGT- 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc--ccceeEEEEc-CCCcEEEEEeCC--EE-EEEe-
Confidence 112223344444 11213333444444568998887763110 3 45666654 477899999843 24 4555
Q ss_pred CCeEEEEeCCCCCc
Q 046899 310 DGILNIWDHEKIGE 323 (407)
Q Consensus 310 d~~i~vwd~~~~~~ 323 (407)
.+...+.|+.++..
T Consensus 156 ~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 156 SKGFYLIDLNTGSP 169 (275)
T ss_pred CCceEEEecCCCCc
Confidence 44588899886443
No 411
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.41 E-value=0.55 Score=27.37 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=26.3
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 298 PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 298 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
|++++|+++...+++|.++|+.+.+.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 57888988888899999999988777666654
No 412
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.83 E-value=0.066 Score=49.16 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=78.9
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
++....++|..+++..++.+-..+.+.+||+.+........--.|... -+.|++ ....++.|...|.+.+++.++
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgt-- 148 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGT-- 148 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHH--HHhhcc-CCccccccccccceEEEeccc--
Confidence 345567888888867777778889999999987652111111122222 278999 888999999999999999987
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
...+-..-.|...++++++.+.+.. +.++.|..+.+-
T Consensus 149 ----sR~iiv~Gkh~RRgtq~av~lEd~v--il~dcd~~L~v~ 185 (615)
T KOG2247|consen 149 ----SRRIIVMGKHQRRGTQIAVTLEDYV--ILCDCDNTLSVT 185 (615)
T ss_pred ----hhhhhhhcccccceeEEEeccccee--eecCcHHHHHHh
Confidence 3444444448889999999998863 366666655443
No 413
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.40 E-value=1.8 Score=24.72 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=22.4
Q ss_pred CCCCEEEEEEcCCCCCEEEEeeCC--CeEEEE
Q 046899 287 HSAAVLCVQWSPDKSSVFGSSAED--GILNIW 316 (407)
Q Consensus 287 h~~~v~~v~~~~~~~~ll~s~~~d--~~i~vw 316 (407)
....-....|+|||++|+-++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445678889999999987777777 766666
No 414
>PRK13616 lipoprotein LpqB; Provisional
Probab=89.29 E-value=5.1 Score=39.47 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=51.3
Q ss_pred cceEEEEecCCCCCEEEEEe------CCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--
Q 046899 240 ADIHCVDWNPHDVNLILTGS------ADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE-- 309 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~-- 309 (407)
..+...+++| +++.++... .|+ .+.+++.. +.......+ ...+.-.|+|+|..|. +.+.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-------g~~~~lt~g--~~~t~PsWspDG~~lw-~v~dg~ 418 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-------GVAVQVLEG--HSLTRPSWSLDADAVW-VVVDGN 418 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-------CcceeeecC--CCCCCceECCCCCceE-EEecCc
Confidence 4677889999 777665544 243 45555542 222222222 2377889999988664 4431
Q ss_pred ----------CCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 310 ----------DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 310 ----------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.+.+.+.++..+...+ ..+..|..+.+|||
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD 458 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRD 458 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC
Confidence 2334444554433222 33557999999999
No 415
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.25 E-value=7.8 Score=34.08 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=47.6
Q ss_pred cccCEEEEEECCCCCcEEEEEe------CCCcEEEEEcCCCCCCceee-e-cccCcceEEEEecCCCC-CEEEEEe-CC-
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVG------DDSCLILWDARSGSTPAVKV-E-KAHNADIHCVDWNPHDV-NLILTGS-AD- 261 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~-~-~~~~~~v~~l~~~~~~~-~~l~tg~-~d- 261 (407)
-.+.|+.|.|..+. .++++|. ....+..||+.+........ . ..-.++|..+.+...+. ++.+.|. .+
T Consensus 35 i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g 113 (281)
T PF12768_consen 35 ISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG 113 (281)
T ss_pred ceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence 45789999998655 6777764 35568899998776211111 0 12357888888854344 3444443 23
Q ss_pred -CcEEEEeCCC
Q 046899 262 -NSIHMFDRRK 271 (407)
Q Consensus 262 -g~i~vwd~~~ 271 (407)
..|..||-..
T Consensus 114 ~~~l~~~dGs~ 124 (281)
T PF12768_consen 114 STFLMKYDGSS 124 (281)
T ss_pred CceEEEEcCCc
Confidence 3577777665
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.19 E-value=19 Score=33.66 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=88.3
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecCC----CCCEEEEEeCCCcEEEEeCCCCCCC--
Q 046899 204 PSSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNPH----DVNLILTGSADNSIHMFDRRKLTSD-- 275 (407)
Q Consensus 204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~~----~~~~l~tg~~dg~i~vwd~~~~~~~-- 275 (407)
+++...+++|+..|.++||+....... .......-..+|..+...+. +...||+ -.-..+.+|.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 445578999999999999998654421 12222344678888886542 2334444 55677888888442210
Q ss_pred -CCCCceeeecCCCC--CEEEEEEcC----CCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccc
Q 046899 276 -GVGSPIHKFEGHSA--AVLCVQWSP----DKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIET 348 (407)
Q Consensus 276 -~~~~~~~~~~~h~~--~v~~v~~~~----~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~ 348 (407)
+..-.+..+..|.- ....+..-| .++..++.=+.||.+.+++-+...-...++.. +
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~------------l----- 175 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF------------L----- 175 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC------------C-----
Confidence 00112222333322 223333333 33456678899999999997764322333221 0
Q ss_pred cceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
++.-.++..+.+.+++.+.+-.|.-|+..
T Consensus 176 --lPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 176 --LPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred --CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 11114444457777777777777777764
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.63 E-value=3.8 Score=37.86 Aligned_cols=119 Identities=12% Similarity=0.203 Sum_probs=80.8
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
..++|.+|.|++|. +.+|.--.++.|.+++....+.. .....+.-...|....|.. + +-+|.-...| +-+|-+.
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEc
Confidence 45699999999999 88999999999999998533311 1122223345688999986 3 6666666555 6677665
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCC
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEK 320 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~ 320 (407)
.. ...++..+.|+..|.=-.|.++.+-++.+.+ ..+++.=+.+++
T Consensus 141 pe-----krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 141 PE-----KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hh-----hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 43 3556667778888888889988875554444 445555555554
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.46 E-value=3.3 Score=34.99 Aligned_cols=77 Identities=6% Similarity=0.083 Sum_probs=50.4
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee-ec-------CCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK-FE-------GHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~-~~-------~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
.++..+.. .+.++++-+.+|.+++||+.+.+..-....+.. +. .....|..+.++.+|.-+ ++-+ +|
T Consensus 13 s~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi-V~ls-ng 87 (219)
T PF07569_consen 13 SPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI-VTLS-NG 87 (219)
T ss_pred CceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE-EEEe-CC
Confidence 34444443 567899999999999999998332110101111 11 345679999999888855 4555 68
Q ss_pred eEEEEeCCCC
Q 046899 312 ILNIWDHEKI 321 (407)
Q Consensus 312 ~i~vwd~~~~ 321 (407)
....||....
T Consensus 88 ~~y~y~~~L~ 97 (219)
T PF07569_consen 88 DSYSYSPDLG 97 (219)
T ss_pred CEEEeccccc
Confidence 8999997764
No 419
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.29 E-value=18 Score=32.21 Aligned_cols=111 Identities=14% Similarity=0.252 Sum_probs=55.5
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CC-C-CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-GS-T-PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~-~-~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
-...|..|.|.|++ .+.+ ....|.|++=+... .. . ..........-.+..++|.+ +....++|+ .|.+ +...
T Consensus 185 ~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~ 259 (302)
T PF14870_consen 185 SSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVST 259 (302)
T ss_dssp SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEES
T ss_pred ccceehhceecCCC-CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeC
Confidence 35689999999998 5444 44889998877221 11 0 00111112233478999998 666666665 4544 3333
Q ss_pred CCCCCCCCCCceeee---cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 270 RKLTSDGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
.. ++.-... ..-...++.|.|.+..+ -| ..+.+|.|--|
T Consensus 260 Dg------GktW~~~~~~~~~~~n~~~i~f~~~~~-gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 260 DG------GKTWQKDRVGENVPSNLYRIVFVNPDK-GF-VLGQDGVLLRY 301 (302)
T ss_dssp ST------TSS-EE-GGGTTSSS---EEEEEETTE-EE-EE-STTEEEEE
T ss_pred CC------CccceECccccCCCCceEEEEEcCCCc-eE-EECCCcEEEEe
Confidence 33 3333322 23345688898876655 45 34568877554
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.01 E-value=29 Score=34.37 Aligned_cols=75 Identities=20% Similarity=0.387 Sum_probs=45.5
Q ss_pred cccCEEEEEEC--CCCCcEEEEEeCCCcEEEEEcC-----CCC--CCceee--ecccC-cceEEEEecCCCCCEEEEEeC
Q 046899 193 HEDTVEDVQFC--PSSAQEFCSVGDDSCLILWDAR-----SGS--TPAVKV--EKAHN-ADIHCVDWNPHDVNLILTGSA 260 (407)
Q Consensus 193 ~~~~v~~l~~~--~~~~~~l~s~~~dg~i~iwd~~-----~~~--~~~~~~--~~~~~-~~v~~l~~~~~~~~~l~tg~~ 260 (407)
..+.|.++.|. |++ +.+.+.|-.+.|.++--. ... ...+.. +..++ .+|....|.+ +|.+++..
T Consensus 71 ~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s-- 146 (631)
T PF12234_consen 71 EDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS-- 146 (631)
T ss_pred CCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--
Confidence 45678888874 567 556666667888887542 111 111221 23343 5788999998 77655543
Q ss_pred CCcEEEEeCCC
Q 046899 261 DNSIHMFDRRK 271 (407)
Q Consensus 261 dg~i~vwd~~~ 271 (407)
+..+.|+|-..
T Consensus 147 GNqlfv~dk~~ 157 (631)
T PF12234_consen 147 GNQLFVFDKWL 157 (631)
T ss_pred CCEEEEECCCc
Confidence 35688887544
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.90 E-value=0.12 Score=47.52 Aligned_cols=133 Identities=13% Similarity=0.146 Sum_probs=87.8
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
.......|-| .+.-++.++.+..+..||-.. +....+.. .+....++|.-++..+++.+-..+.+.+||+.
T Consensus 35 v~pi~~~w~~-e~~nlavaca~tiv~~YD~ag-------q~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 35 VGPIIHRWRP-EGHNLAVACANTIVIYYDKAG-------QVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cccceeeEec-CCCceehhhhhhHHHhhhhhc-------ceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 3344677888 444488888888999999764 44444442 44567888988888777777888999999998
Q ss_pred CCCccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccc
Q 046899 320 KIGEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKS 398 (407)
Q Consensus 320 ~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~ 398 (407)
+.. .+.++. ....-.-..|++- ...++.+...+.+.|++-. +...+..+..|..
T Consensus 106 ~ey-tqqLE~gg~~s~sll~wsKg------------------~~el~ig~~~gn~viynhg------tsR~iiv~Gkh~R 160 (615)
T KOG2247|consen 106 SEY-TQQLESGGTSSKSLLAWSKG------------------TPELVIGNNAGNIVIYNHG------TSRRIIVMGKHQR 160 (615)
T ss_pred hhh-HHHHhccCcchHHHHhhccC------------------CccccccccccceEEEecc------chhhhhhhccccc
Confidence 732 233322 1111111344432 3445555678889999887 6666667666888
Q ss_pred ceeEeecc
Q 046899 399 HIFGCDKS 406 (407)
Q Consensus 399 ~v~~~~~s 406 (407)
.++++++.
T Consensus 161 Rgtq~av~ 168 (615)
T KOG2247|consen 161 RGTQIAVT 168 (615)
T ss_pred ceeEEEec
Confidence 88887763
No 422
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.82 E-value=15 Score=30.64 Aligned_cols=106 Identities=11% Similarity=0.230 Sum_probs=64.7
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---C---cEEEE-eCCCCCCCCCCCc
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---N---SIHMF-DRRKLTSDGVGSP 280 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g---~i~vw-d~~~~~~~~~~~~ 280 (407)
.+|++ ...+.|.+|++.+...+....+. .-+.|..+.++. .|++++|--.+ . .+|+| +-+....+ ..+
T Consensus 30 ~Lfva-~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~--~~~ 104 (215)
T PF14761_consen 30 ALFVA-ASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE--NSP 104 (215)
T ss_pred eEEEE-cCCCEEEEEEcccCCCceeEEEc-chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc--CCc
Confidence 34444 56788999999955544455553 448899999999 89999985332 2 55664 22211000 111
Q ss_pred ee-----------------------eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 281 IH-----------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 281 ~~-----------------------~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
+. ++. -..++.+++-.|-...|+ .|+ ++++.+|.+...
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 11 112 144678888888655465 454 678999998753
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.26 E-value=10 Score=35.40 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=54.0
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce-EEEEecCCC----------------CC-
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI-HCVDWNPHD----------------VN- 253 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~l~~~~~~----------------~~- 253 (407)
.....+.+|+.+|.+ .+.++...-|+|.++|+.++. .++..++..+.= .-+...... ..
T Consensus 305 D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~--vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 305 DSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGI--VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred cCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCCh--hhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 345678899999998 777777677999999999886 454544433211 101110000 11
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286 (407)
Q Consensus 254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 286 (407)
+++-+-.-|.|.||.++. +..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~------g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQ------GPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCC------CCEEEEEEe
Confidence 223345678899999988 666666643
No 424
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.04 E-value=27 Score=32.78 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=59.6
Q ss_pred EEEEEECCCCCcEEEEEeCCC---cEEEEEcCCC---CCCceeeecccCcce-EEEEecCCCCCEEEEEe---CCCcEEE
Q 046899 197 VEDVQFCPSSAQEFCSVGDDS---CLILWDARSG---STPAVKVEKAHNADI-HCVDWNPHDVNLILTGS---ADNSIHM 266 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~---~~~~~~~~~~~~~~v-~~l~~~~~~~~~l~tg~---~dg~i~v 266 (407)
...+..++++..+++...... .+.+.|+... .. ....+......+ ..+... ++.+++... ..+.|.-
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~-~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~ 305 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA-KPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVA 305 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC-CcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEE
Confidence 567888999855555554433 4788888764 21 223333333333 334433 344444332 2357777
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCC
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHE 319 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~ 319 (407)
.++..+.. ..-...+..+...+.-..+...+.+|++..-.++ .|+++|+.
T Consensus 306 ~~l~~~~~---~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 306 VDLADPSP---AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EETTSTSG---GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred eccccccc---ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 78777321 0112255556654333333445566776776665 47888888
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.42 E-value=7.6 Score=38.66 Aligned_cols=114 Identities=10% Similarity=0.105 Sum_probs=69.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC-------C--C-----CCCCceeeecCCCCCEEEEEEc--CCCCCEEEEeeCCCeEE
Q 046899 251 DVNLILTGSADNSIHMFDRRKLT-------S--D-----GVGSPIHKFEGHSAAVLCVQWS--PDKSSVFGSSAEDGILN 314 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~-------~--~-----~~~~~~~~~~~h~~~v~~v~~~--~~~~~ll~s~~~d~~i~ 314 (407)
+...|+.+.+||.|.+|.++... . + ..-+|...+. -...+++++++ ...+ ++|.++....|.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-lIAVSsNs~~VT 190 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-LIAVSSNSQEVT 190 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-EEEEecCCceEE
Confidence 45688889999999999652110 0 0 0012334444 24588999998 5555 678888888888
Q ss_pred EEeCCCCCcc-cc--cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 315 IWDHEKIGEK-QD--YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 315 vwd~~~~~~~-~~--~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
||-+...... .. -..+...|.+++|-++- .-..|| ..|++.+..|.+-+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~-----------~d~~G~-v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDD-----------LDPNGH-VKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCC-----------CCCccc-eEEEEEeccCcEEEEEE
Confidence 8876652111 11 11245556677774431 111233 57889999998888777
No 426
>PHA03098 kelch-like protein; Provisional
Probab=86.33 E-value=7.4 Score=38.02 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=52.9
Q ss_pred cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------CcEEEEeCCCCCCCC
Q 046899 208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------NSIHMFDRRKLTSDG 276 (407)
Q Consensus 208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------g~i~vwd~~~~~~~~ 276 (407)
.+++.||.+ ..+..||..+.+......+. +...-.+++.. ++++.+.||.+ ..+..||..+..
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--- 417 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK--- 417 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe---
Confidence 677778765 34778888776632111111 11111122222 56777777732 357889987632
Q ss_pred CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--------CeEEEEeCCCCC
Q 046899 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GILNIWDHEKIG 322 (407)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--------~~i~vwd~~~~~ 322 (407)
+..+..+....... ++... ++. |++.||.+ ..+.+||+.+.+
T Consensus 418 -W~~~~~~p~~r~~~-~~~~~-~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 418 -WSKGSPLPISHYGG-CAIYH-DGK-IYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred -eeecCCCCccccCc-eEEEE-CCE-EEEECCccCCCCCcccceEEEecCCCCc
Confidence 33333322111111 22222 343 66677643 237888887643
No 427
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.28 E-value=21 Score=30.89 Aligned_cols=118 Identities=13% Similarity=0.093 Sum_probs=66.1
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEE-cCCCCCCcee-eecccCcceEEEEecCCCCCEEEEEe---CCCcEEEEeCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWD-ARSGSTPAVK-VEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMFDRR 270 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vwd~~ 270 (407)
.+..-.|++++ .+.+....+...+++. ..++...... ....-...|..+.++| |+..+|.-. .++.|.+--+.
T Consensus 67 ~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 67 SLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence 45566888887 5666655566666663 3333311111 1111122899999999 777766544 35677776554
Q ss_pred CCCCC---CCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 271 KLTSD---GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 271 ~~~~~---~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
..... ....++.........+++++|.+++..++++...+..+..
T Consensus 145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 32211 0012222332335689999999999855545455554444
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.16 E-value=6.6 Score=33.17 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=45.3
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee----e-ec-------ccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK----V-EK-------AHNADIHCVDWNPHDVNLILTGSADNS 263 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~-~~-------~~~~~v~~l~~~~~~~~~l~tg~~dg~ 263 (407)
++..+. ..+ .++++.+.+|.+++||+.+.+..... . +. .....|..+.++. +|.-+++-+ +|.
T Consensus 14 ~~~~l~--~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 14 PVSFLE--CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGD 88 (219)
T ss_pred ceEEEE--eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCC
Confidence 344444 344 67888889999999999987621000 0 11 2445677777776 666666544 577
Q ss_pred EEEEeCCC
Q 046899 264 IHMFDRRK 271 (407)
Q Consensus 264 i~vwd~~~ 271 (407)
.+.||...
T Consensus 89 ~y~y~~~L 96 (219)
T PF07569_consen 89 SYSYSPDL 96 (219)
T ss_pred EEEecccc
Confidence 78887764
No 429
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.04 E-value=23 Score=31.05 Aligned_cols=124 Identities=13% Similarity=0.290 Sum_probs=71.7
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-CcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
+-...+.++.|+|+. +.|++......-.++=..+++ .+..+.-. -...-.|.+.- ++++.++--.++.+.++.+.
T Consensus 83 g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~Gd--lirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 83 GETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGD--LIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccceeeCCCc-ceEEEecCCCceEEEEecCCc--eEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence 344569999999999 455555544554454444565 34333211 12234567765 56666665667888888766
Q ss_pred CCCCCCCCC----ceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 271 KLTSDGVGS----PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 271 ~~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.....-..+ ++......+.....++|.|..+.++ .+-+-+=++|+.+..
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~ 211 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQ 211 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEec
Confidence 521100000 1111111255688999999999887 455556688887764
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.02 E-value=24 Score=31.20 Aligned_cols=121 Identities=10% Similarity=0.121 Sum_probs=73.7
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-----CCCceeeecc-----cCcceEEEEecCCCC------------C
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSG-----STPAVKVEKA-----HNADIHCVDWNPHDV------------N 253 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~v~~l~~~~~~~------------~ 253 (407)
.-+.|+++|.+ .+.++...-+...+||.... ..++...+.. .....+.+.|+. .. .
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence 34689999988 67777777899999999711 1223333332 224567788875 22 2
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcC--CCCCEEEEeeCCCeEEEEeCC
Q 046899 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSP--DKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~--~~~~ll~s~~~d~~i~vwd~~ 319 (407)
.++.+++||+|.-|........ +-.....+.. ...--..+++.. .+.+|+++--..++|.|+|-.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~-~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTR-MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred eEEEEeCCceEEeecCcCCccc-ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 3677889999999986431100 0011122221 122334455553 367788888889999999854
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.80 E-value=13 Score=38.04 Aligned_cols=116 Identities=5% Similarity=0.082 Sum_probs=77.0
Q ss_pred CEEEEEECCCCCcEEEEEeC----------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 196 TVEDVQFCPSSAQEFCSVGD----------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
.|.+..|..+...++++|.. .|.|.+|.+...+.........-.+.+.++.-- +++++|. -...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEE
Confidence 44555687774467777753 588999988874321112222234555555443 5666664 456899
Q ss_pred EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
+|+..+ .+.++.-..|..++..+...-.|..+ +.|..-+.+.+-..+..+
T Consensus 852 Lye~t~------~~eLr~e~~~~~~~~aL~l~v~gdeI-~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 852 LYEWTT------ERELRIECNISNPIIALDLQVKGDEI-AVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEEccc------cceehhhhcccCCeEEEEEEecCcEE-EEeeccceEEEEEEeccC
Confidence 999988 55666666788889999888888866 588777888777666543
No 432
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.71 E-value=13 Score=32.78 Aligned_cols=100 Identities=13% Similarity=0.262 Sum_probs=62.9
Q ss_pred CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe------CCCcEEEEeCCCCCCCCCCCceeeecC----
Q 046899 217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS------ADNSIHMFDRRKLTSDGVGSPIHKFEG---- 286 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~------~dg~i~vwd~~~~~~~~~~~~~~~~~~---- 286 (407)
..|++||..+.+. ...-.+-.+.|++|.|.. +.++++.|. ....+..||... .....+..
T Consensus 16 ~~lC~yd~~~~qW--~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~-------~~w~~~~~~~s~ 85 (281)
T PF12768_consen 16 PGLCLYDTDNSQW--SSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKN-------QTWSSLGGGSSN 85 (281)
T ss_pred CEEEEEECCCCEe--ecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCC-------CeeeecCCcccc
Confidence 3599999988773 333334678899999986 666777764 456788999887 23333333
Q ss_pred -CCCCEEEEEEcC-CCCCEEEEee---CCCeEEEEeCCCCCcccc
Q 046899 287 -HSAAVLCVQWSP-DKSSVFGSSA---EDGILNIWDHEKIGEKQD 326 (407)
Q Consensus 287 -h~~~v~~v~~~~-~~~~ll~s~~---~d~~i~vwd~~~~~~~~~ 326 (407)
-.++|..+.+.. ++..+++.|. .+..|.-||=.+...+..
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 236788887743 3333554443 234577777665554433
No 433
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.47 E-value=2.4 Score=41.61 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=42.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-----------eec-----------CCCCCEEEEEEcC----CCCCEE
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-----------KFE-----------GHSAAVLCVQWSP----DKSSVF 304 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~-----------~h~~~v~~v~~~~----~~~~ll 304 (407)
++..++.+..||.+........... +.... .+. .-...+..++.++ +.. ++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~--~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 233 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSD--GSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT-FL 233 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----S--SS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT-EE
T ss_pred CCCEEEEEECCCCeEEEECCcccCC--CCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC-EE
Confidence 5567888888998888876642211 11110 000 1124566667766 455 44
Q ss_pred EEeeCCCeEEEEeCCCCCccccc
Q 046899 305 GSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 305 ~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
++.+.|+++|+||+.+++++.+.
T Consensus 234 ~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 234 FTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEETTSEEEEEETTTTCEEEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEe
Confidence 69999999999999998885543
No 434
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.90 E-value=40 Score=32.88 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC
Q 046899 217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH 287 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h 287 (407)
|.|.-+|+.+++ .............+.... .+.+++.++.+|.++.+|.++ ++++.+++..
T Consensus 441 g~l~AiD~~tGk--~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~T------Ge~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGK--IVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKT------GEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCc--eeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCC------CCEeEEEeCC
Confidence 456677777776 233222111111111111 345777788899999999999 9999888753
No 435
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.74 E-value=32 Score=31.62 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=64.3
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---CCc-EEEEEcCCCCCCceeeeccc--CcceEEEEecC
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---DSC-LILWDARSGSTPAVKVEKAH--NADIHCVDWNP 249 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~~~~~~~~--~~~v~~l~~~~ 249 (407)
|.-.|+.+++....+ .-...+..+.|+|..+.+++-|-+ +.. -|||-+++... ....+..+ ...+..=-|.|
T Consensus 170 i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 170 IFTIDLKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEETTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-T
T ss_pred EEEEECCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcccccccccC
Confidence 333466666654444 356678899999998888877765 222 36676654331 12222222 23344455788
Q ss_pred CCCCEEEE-E----eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-------------
Q 046899 250 HDVNLILT-G----SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG------------- 311 (407)
Q Consensus 250 ~~~~~l~t-g----~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~------------- 311 (407)
+|..|.- + +.+..|.-+|+.+ ++...... ..+...+--+++|. |+|-=+.|.
T Consensus 248 -DG~~i~y~~~~~~~~~~~i~~~d~~t------~~~~~~~~--~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~ 317 (386)
T PF14583_consen 248 -DGSTIWYDSYTPGGQDFWIAGYDPDT------GERRRLME--MPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIE 317 (386)
T ss_dssp -TSS-EEEEEEETTT--EEEEEE-TTT--------EEEEEE--E-SEEEEEE-TTSS-EEEEEE----------------
T ss_pred -CCCEEEEEeecCCCCceEEEeeCCCC------CCceEEEe--CCceeeeEEcCCCC-EEEecCCCCCccccccccceec
Confidence 6655433 2 2344677778877 33322111 12445566678888 543333332
Q ss_pred ---eEEEEeCCCCC
Q 046899 312 ---ILNIWDHEKIG 322 (407)
Q Consensus 312 ---~i~vwd~~~~~ 322 (407)
.|.+++++...
T Consensus 318 ~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 318 NDPWIYLFDVEAGR 331 (386)
T ss_dssp ---EEEEEETTTTE
T ss_pred CCcEEEEeccccCc
Confidence 56678887643
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=84.56 E-value=31 Score=31.32 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=62.2
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
...+.++.+.|++ .+++++ ..|.+..- .+.+...-......-...++++.+.+ +++.+++| ..|.+++=....-
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G- 245 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDL- 245 (334)
T ss_pred cceEEEEEECCCC-eEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCC-
Confidence 3568889999987 555444 45654431 11221111222223456788999999 77776665 4676643222220
Q ss_pred CCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 274 SDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 274 ~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
..++.+..- ..-...+.++.+.|++. ++ .++.+|.+. .....++.
T Consensus 246 --~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~-~S~d~G~t 291 (334)
T PRK13684 246 --ESWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL-VSKDGGKT 291 (334)
T ss_pred --CccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE-EeCCCCCC
Confidence 002221111 00123578899999877 55 455577664 33444333
No 437
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=31 Score=30.28 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=79.4
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
.+-+..+.++. ++...+-.+.-+++.|+.+...|....+....+.-.++.. .|++...+..|.-..+.|+..+.
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC
Confidence 45567777775 4566667788899999999987665555444455566666 57888888867677899998865
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
+ .............-..++.|-+ +-+ .+..|+-+.+-|+......
T Consensus 160 s---P~lagrya~~~~d~~~v~ISGn--~AY-vA~~d~GL~ivDVSnp~sP 204 (370)
T COG5276 160 S---PQLAGRYALPGGDTHDVAISGN--YAY-VAWRDGGLTIVDVSNPHSP 204 (370)
T ss_pred C---ceeeeeeccCCCCceeEEEecC--eEE-EEEeCCCeEEEEccCCCCC
Confidence 3 2333334333333466777544 344 4456788999999876554
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=82.72 E-value=11 Score=36.23 Aligned_cols=101 Identities=7% Similarity=-0.041 Sum_probs=52.6
Q ss_pred cEEEEEeCCC---cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899 208 QEFCSVGDDS---CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF 284 (407)
Q Consensus 208 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~ 284 (407)
.+.+.||.++ .+..||.++.+................+.+ ++.+.+.|+ .+.+||.++.. +..+..+
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~----W~~~~~m 433 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNT----WTLIDDP 433 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCc----EeEcCCC
Confidence 6777777553 477899887653211111111111122222 566667764 57789987633 5444444
Q ss_pred cCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899 285 EGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI 321 (407)
Q Consensus 285 ~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 321 (407)
.........+.+ +++ |++.||.+ .++..||..+.
T Consensus 434 ~~~r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 434 IYPRDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCCC
Confidence 322222222222 444 77788754 35667776653
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.29 E-value=20 Score=27.37 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=67.0
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-----CceeeecccCcceEEEEecCC----CCCEEEEEeCCCcEEEEeC
Q 046899 199 DVQFCPSSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKAHNADIHCVDWNPH----DVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~l~~~~~----~~~~l~tg~~dg~i~vwd~ 269 (407)
.-+|....+ .|+.++.-|+|.|++...... .....+..-...|++|+-.+. +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 346667674 678888889999998765431 011222345667888876542 355677766 557889999
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEc---CCCCCEEEEeeCCCeEEEEeCCC
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWS---PDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.. ..-+..-. -.+.|+++.+- .....++ ..+.+..|.-+|.+-
T Consensus 81 ~~------N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 81 EN------NSDLFYKE-VPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDYEG 126 (136)
T ss_pred cc------Cchhhhhh-CccceeEEEEEecCCCCCcEE-EECceEEEEEeCCCC
Confidence 87 33332222 34567777663 2222244 344467777777654
No 440
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.09 E-value=11 Score=39.80 Aligned_cols=146 Identities=10% Similarity=0.164 Sum_probs=80.0
Q ss_pred ccCCCCCCCCCCCCcCceeeEeecccCEEEEEEC--------CCCCcEEEEEeCCCcEEEEEcC----CCCCC-c--eee
Q 046899 170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC--------PSSAQEFCSVGDDSCLILWDAR----SGSTP-A--VKV 234 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~--------~~~~~~l~s~~~dg~i~iwd~~----~~~~~-~--~~~ 234 (407)
.+.|..+.+|+.++....+.+.+-...|..+..- |.=.++|+.++. -.|.++-+. ++... . ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 4556666666666655566665555555555432 221133444432 344444332 22210 0 011
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC------------------CCceeeec-CCCCCEEEEE
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV------------------GSPIHKFE-GHSAAVLCVQ 295 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~------------------~~~~~~~~-~h~~~v~~v~ 295 (407)
+...+..|+|+.... +|+.|++|-.+ .+|.+-....++= -..+..+. .+.++|..++
T Consensus 174 i~~dg~~V~~I~~t~-nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTE-NGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eecCCceEEEEEecc-CCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 223356788898666 88888876644 4554322111000 00112233 5678999999
Q ss_pred EcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 296 WSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 296 ~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
...... ++.+-+..++|.+||+...
T Consensus 250 ID~SR~-IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 250 IDNSRN-ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eccccc-eeeeeccCceEEEEEccCC
Confidence 986555 6678999999999999873
No 441
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.58 E-value=6.9 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.272 Sum_probs=18.6
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899 204 PSSAQEFCSVGDDSCLILWDARSGS 228 (407)
Q Consensus 204 ~~~~~~l~s~~~dg~i~iwd~~~~~ 228 (407)
|++..++++...++.|.++|..++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 4564566666678999999997766
No 442
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=81.15 E-value=7.8 Score=27.06 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=27.2
Q ss_pred CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.-+.|.++|++++|+++....+.|+++..+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4578999999999999999999999998754
No 443
>PRK10115 protease 2; Provisional
Probab=80.44 E-value=70 Score=32.46 Aligned_cols=113 Identities=10% Similarity=0.027 Sum_probs=62.1
Q ss_pred CEEEEEECCCCCcEEEEEe-CC----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-C-----CcE
Q 046899 196 TVEDVQFCPSSAQEFCSVG-DD----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-D-----NSI 264 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-d-----g~i 264 (407)
.+..+.++|++ ++|+-+. .+ -.|++-|+.++.. ....+. ... ..++|.+ +++.|+.... + ..|
T Consensus 128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~-~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNW-YPELLD-NVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCC-CCcccc-Ccc--eEEEEee-CCCEEEEEEecCCCCCCCEE
Confidence 46678899999 5555443 23 3588889987751 111111 111 4699999 6665544433 2 357
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEE-EEEEcCCCCCEEEEeeC--CCeEEEEeC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVL-CVQWSPDKSSVFGSSAE--DGILNIWDH 318 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~ll~s~~~--d~~i~vwd~ 318 (407)
..+++.+... +-...+........ .+..+.+++++++.+.. ++.+.+++.
T Consensus 202 ~~h~lgt~~~----~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 202 WRHTIGTPAS----QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEECCCChh----HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 7778877310 22223332223333 33445578877654443 357888884
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.41 E-value=74 Score=32.68 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=42.0
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE-------------EEEecCC-CCCEEEEEeC----------CCc
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH-------------CVDWNPH-DVNLILTGSA----------DNS 263 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-------------~l~~~~~-~~~~l~tg~~----------dg~ 263 (407)
..++.++.|+.|.-.|.++++ ....+. ..+.|. .+.-.|. .+..+++|+. +|.
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk--~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGK--LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CEEEEecCCCeEEEEECCCCC--EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 367778889999999999988 343331 111110 1111110 1235555643 688
Q ss_pred EEEEeCCCCCCCCCCCceeeec
Q 046899 264 IHMFDRRKLTSDGVGSPIHKFE 285 (407)
Q Consensus 264 i~vwd~~~~~~~~~~~~~~~~~ 285 (407)
|+-+|.++ ++.+-.+.
T Consensus 338 I~A~Da~T------Gkl~W~~~ 353 (764)
T TIGR03074 338 IRAFDVNT------GALVWAWD 353 (764)
T ss_pred EEEEECCC------CcEeeEEe
Confidence 99999999 77776664
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.39 E-value=22 Score=33.67 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=71.9
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC------CCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899 209 EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH------DVNLILTGSADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
++..|+.-..++--|+..++ .+.....|..- -+.|.|. ....-++|-.+..|.-.|.|.. +..+.
T Consensus 482 i~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~-----gNKi~ 552 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR-----GNKIK 552 (776)
T ss_pred EEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEeccccc-----CCcee
Confidence 44455566677778888777 56666555543 4677772 1122345556777777777763 22222
Q ss_pred --eecC--CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 283 --KFEG--HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 283 --~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
..+. ......+..-..+| |+ |.+|.-|.|++||--.-.....+++.+..|-.+..+.+
T Consensus 553 v~esKdY~tKn~Fss~~tTesG-yI-a~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESG-YI-AAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred eeeehhccccccccccccccCc-eE-EEecCCCceeeehhhcchhhhcCcccccceeeeEeecC
Confidence 2221 11222333333344 35 79999999999996654555667777776666665555
No 446
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=80.13 E-value=49 Score=30.50 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=49.9
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-----CCCce-eeecc----cCcceEEEEecCCCCCEEEEEeCC----
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSG-----STPAV-KVEKA----HNADIHCVDWNPHDVNLILTGSAD---- 261 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~-~~~~~----~~~~v~~l~~~~~~~~~l~tg~~d---- 261 (407)
....|++.+++ ++++ ......++.|.... +...+ ..+.. +......+.|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK 148 (367)
T ss_pred CccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence 45678888876 4443 33333334354321 11011 11211 123467899999 77765544421
Q ss_pred ---------------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899 262 ---------------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307 (407)
Q Consensus 262 ---------------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~ 307 (407)
|.|.-+|... ..+..+...-.....++|+|+|. ++++-
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg-------~~~e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDG-------GKLRVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred eccCCCccCcccccCceEEEEecCC-------CeEEEEecCcCCCccceECCCCC-EEEEc
Confidence 3344444443 22223322222347899999988 55443
No 447
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.29 E-value=10 Score=37.19 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=40.8
Q ss_pred cEEEEEeCCCcEEEEEcCC---CCCCceee-ec--------------------ccCcceEEEEecC---CCCCEEEEEeC
Q 046899 208 QEFCSVGDDSCLILWDARS---GSTPAVKV-EK--------------------AHNADIHCVDWNP---HDVNLILTGSA 260 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~---~~~~~~~~-~~--------------------~~~~~v~~l~~~~---~~~~~l~tg~~ 260 (407)
..|+.+..||.+....... ........ +. .....+..+++++ .+..++++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 5678888899988887765 11000000 00 0112334444443 25679999999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeee
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHKF 284 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~~ 284 (407)
|+.+|+||+.+ +.++.+.
T Consensus 239 D~~LRiW~l~t------~~~~~~~ 256 (547)
T PF11715_consen 239 DHTLRIWSLET------GQCLATI 256 (547)
T ss_dssp TSEEEEEETTT------TCEEEEE
T ss_pred CCeEEEEECCC------CeEEEEe
Confidence 99999999999 6665543
No 448
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.79 E-value=35 Score=31.89 Aligned_cols=56 Identities=7% Similarity=0.089 Sum_probs=37.9
Q ss_pred CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.|-+.=|-+..+.. .-++.--....++|.++.|++|.+ ++|.--.|++|.+++...
T Consensus 42 Sggatgvvvkgpnd---DVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~ 97 (657)
T KOG2377|consen 42 SGGATGVVVKGPND---DVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIP 97 (657)
T ss_pred cCCeeEEEEeCCCC---CCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCC
Confidence 34455555554332 223322223467999999999998 668999999999999843
No 449
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.13 E-value=71 Score=31.21 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=36.7
Q ss_pred cEEEEeCCCCCCCCCCCceeeecC--CCC-------CEEEEEEcCCCC--CEEEEeeCCCeEEEEeCCCCCcc
Q 046899 263 SIHMFDRRKLTSDGVGSPIHKFEG--HSA-------AVLCVQWSPDKS--SVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 263 ~i~vwd~~~~~~~~~~~~~~~~~~--h~~-------~v~~v~~~~~~~--~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
+|.-.|+++ ++..-.++. |.. ...=+....+|+ .+++.+..+|.+.+.|-++++.+
T Consensus 272 s~vAld~~T------G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDT------GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEcccc------CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 566677777 777776664 211 111122223555 46679999999999999998765
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.86 E-value=61 Score=30.29 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=58.3
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~ 276 (407)
...+..++++ .+++.+.....++-||-.... -..........+.++.+.+ ++.+++++ .+|.+.. ....
T Consensus 241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~----- 309 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPY--WQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGT----- 309 (398)
T ss_pred eeeEEEcCCC-CEEEEECCccEEEecCCCCcc--eEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCC-----
Confidence 4456667777 566665544333445432211 0112223355688999988 77777665 4566533 2222
Q ss_pred CCC-----ceeeecCC--CCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 277 VGS-----PIHKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 277 ~~~-----~~~~~~~h--~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
+. ........ ...+.++.|.+++. ++ .++.+|.+...
T Consensus 310 -G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s 353 (398)
T PLN00033 310 -GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRS 353 (398)
T ss_pred -CCcccccceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEe
Confidence 22 22332221 23589999998877 55 45567876655
No 451
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.25 E-value=18 Score=32.76 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=56.0
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-Cceeee----cccCcceEEEEecCC---CCCEEEEEeCC------
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-PAVKVE----KAHNADIHCVDWNPH---DVNLILTGSAD------ 261 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~----~~~~~~v~~l~~~~~---~~~~l~tg~~d------ 261 (407)
.-+.|+|.|++ .+|++ ...|.|++++ ..+.. ..+... .........++++|. ++.+.+..+..
T Consensus 3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTS-CEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCC-cEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 35789999998 66655 5699999999 33331 112121 223456789999992 23333333321
Q ss_pred --CcEEEEeCCCCCC--CCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899 262 --NSIHMFDRRKLTS--DGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 262 --g~i~vwd~~~~~~--~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~d~~ 312 (407)
..|.-|....... ......+..+.. ....-..|+|.|+|. |+++.+..+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCC
Confidence 1333343332100 000011222222 234567799999996 5556655443
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.54 E-value=56 Score=34.91 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=52.7
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC----CC---C---------------CCceeeec-ccCcceEEEEecC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR----SG---S---------------TPAVKVEK-AHNADIHCVDWNP 249 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~~---~---------------~~~~~~~~-~~~~~v~~l~~~~ 249 (407)
..-.|+|+....+| ++|.+|- || .+|.+. .+ + .|....+. .+.++|..+..+.
T Consensus 177 dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 177 DGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 45678999977778 7777665 55 555442 11 0 01122223 5677999999988
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 250 HDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 250 ~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
..+.+.+-+..|+|.+||+....
T Consensus 253 -SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 253 -SRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred -ccceeeeeccCceEEEEEccCCC
Confidence 77899999999999999997633
No 453
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.49 E-value=12 Score=21.24 Aligned_cols=30 Identities=3% Similarity=0.161 Sum_probs=20.5
Q ss_pred cccCEEEEEECCCCCcEEEEEeCC--CcEEEE
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDD--SCLILW 222 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~d--g~i~iw 222 (407)
....-....|+|+|..++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344667889999996666676666 666665
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.90 E-value=49 Score=31.63 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=50.1
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC---------CCCCCc--------eeeec-ccCcceEEEEecCCC--CC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR---------SGSTPA--------VKVEK-AHNADIHCVDWNPHD--VN 253 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~--------~~~~~-~~~~~v~~l~~~~~~--~~ 253 (407)
.-.|..+..++.| ..++-.|.+|.+.++=.+ .++... ...+. ...-.+..++|+|.. ..
T Consensus 103 ~feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 3467888899999 677777778876665321 121000 00011 112246788999954 56
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 046899 254 LILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 254 ~l~tg~~dg~i~vwd~~~~~ 273 (407)
.|..-+.|..||+||...+.
T Consensus 182 hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eEEEEecCcEEEEEecCCcc
Confidence 78888889999999987644
No 455
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.88 E-value=74 Score=30.27 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=37.9
Q ss_pred EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee-----cccCcceEEEEecC
Q 046899 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE-----KAHNADIHCVDWNP 249 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~l~~~~ 249 (407)
+...-..-+.|+|.|++ .+|++--..|.|++++...........+ .........|+++|
T Consensus 25 va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred EECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 33344567899999998 7776654469999998655432111111 11246678999998
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.62 E-value=45 Score=33.29 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 289 AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 289 ~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
..+..+..||+.++| |--..+|.|.+-+....+....+.
T Consensus 217 ~~~~ki~VS~n~~~l-aLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFL-ALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceE-EEEecCCcEEEEecchhhhhhccC
Confidence 467888899999876 677788999998888766666655
No 457
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=75.02 E-value=9.8 Score=19.88 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=20.6
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEe
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFD 268 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 268 (407)
..|.+++..+ .+++.+.+.+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 4577888755 6899999999999983
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.01 E-value=31 Score=32.25 Aligned_cols=150 Identities=13% Similarity=-0.014 Sum_probs=81.9
Q ss_pred eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc----ceE-EEEecCCCCCEEEEEeCC
Q 046899 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA----DIH-CVDWNPHDVNLILTGSAD 261 (407)
Q Consensus 187 ~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~-~l~~~~~~~~~l~tg~~d 261 (407)
+..+...-..|..+-..|+| +.+..-+. ..+.++++.+......+......+ .|+ ++..-. ++.-++.++.|
T Consensus 213 i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~d 289 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHED 289 (733)
T ss_pred hhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCC
Confidence 33344455677888899999 66665544 788999987765322222222122 122 122223 67778889999
Q ss_pred CcEEEE-eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCc
Q 046899 262 NSIHMF-DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYS 340 (407)
Q Consensus 262 g~i~vw-d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 340 (407)
|.|.-| |++.... .....++.++-...++..+.=..+ +.-|++-...|++.++.....+.+.. +..-..+..+++|
T Consensus 290 G~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~S 366 (733)
T COG4590 290 GLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMS 366 (733)
T ss_pred CceeeeeeeecCCC-CcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeC
Confidence 988766 6665321 001223333333344444433223 33567888889988887665433322 2222244566777
Q ss_pred Cc
Q 046899 341 SD 342 (407)
Q Consensus 341 ~d 342 (407)
|+
T Consensus 367 p~ 368 (733)
T COG4590 367 PN 368 (733)
T ss_pred cc
Confidence 76
No 459
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=74.74 E-value=1.3e+02 Score=32.53 Aligned_cols=24 Identities=4% Similarity=0.023 Sum_probs=15.8
Q ss_pred EeecccCEEEEEECCCCCcEEEEEe
Q 046899 190 YLGHEDTVEDVQFCPSSAQEFCSVG 214 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~~~~l~s~~ 214 (407)
-.+|-....+++.+|+| ...++-.
T Consensus 657 t~A~lnsp~alaVsPdg-~v~IAD~ 680 (1899)
T KOG4659|consen 657 TQAKLNSPYALAVSPDG-DVIIADS 680 (1899)
T ss_pred hccccCCcceEEECCCC-cEEEecC
Confidence 34566677888888888 5554433
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=74.74 E-value=42 Score=30.25 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=33.2
Q ss_pred cEEEEEeC-----CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc----EEEEeCCC
Q 046899 208 QEFCSVGD-----DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS----IHMFDRRK 271 (407)
Q Consensus 208 ~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~----i~vwd~~~ 271 (407)
.+++.|+. ...+..||+.+.+......+.... .....+... ++++.+.|+.++. +.+||.++
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCC
Confidence 56666664 246888998877632222121111 111111222 5677788876643 46788876
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.28 E-value=56 Score=28.08 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=63.8
Q ss_pred EEECCCCCcEEEEEeC-C--CcEEEEEcCCCCCCceeee----cccCcceEEEEecCCCCCEEEEEeCCC-cEEEEeCCC
Q 046899 200 VQFCPSSAQEFCSVGD-D--SCLILWDARSGSTPAVKVE----KAHNADIHCVDWNPHDVNLILTGSADN-SIHMFDRRK 271 (407)
Q Consensus 200 l~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~tg~~dg-~i~vwd~~~ 271 (407)
=.+.++| .++.+|+. + ..+++++.......+.... ......--++.--| ||+.|+.|+... ...+|..+.
T Consensus 72 g~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~-DG~vlIvGG~~~~t~E~~P~~~ 149 (243)
T PF07250_consen 72 GAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP-DGRVLIVGGSNNPTYEFWPPKG 149 (243)
T ss_pred cCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC-CCCEEEEeCcCCCcccccCCcc
Confidence 3567888 78888875 2 4588888654110011111 11122222333446 888998888774 344444422
Q ss_pred CCCCCCCCcee--eec-----CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC
Q 046899 272 LTSDGVGSPIH--KFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY 332 (407)
Q Consensus 272 ~~~~~~~~~~~--~~~-----~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 332 (407)
.. ..... -+. .....--.+...|+|+ ||+.+..+ -.|||..+.+.++.++...+
T Consensus 150 ~~----~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~--s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 150 PG----PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRG--SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred CC----CCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcCC--cEEEeCCCCeEEeeCCCCCC
Confidence 11 11111 111 0111223456679998 66566543 44679888766666665433
No 462
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=74.16 E-value=87 Score=32.31 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=74.2
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--C-CceeeecccC----------cceEEEEecCCCCCEEEEEeC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS--T-PAVKVEKAHN----------ADIHCVDWNPHDVNLILTGSA 260 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~-~~~~~~~~~~----------~~v~~l~~~~~~~~~l~tg~~ 260 (407)
..+...++|+|.....||.....|.-.+||+.... . ........+. +.-..+.|.+ +.+.|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~- 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN- 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-
Confidence 34677899999877899999999999999992111 0 0111111111 2234788987 667777765
Q ss_pred CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC-CCEEEEeeCCCeEEEEeCCC
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK-SSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~ll~s~~~d~~i~vwd~~~ 320 (407)
...+.++|++... ...+-........|.++.-+|.. .++|+-. ...|...|+..
T Consensus 223 r~~l~~~d~~~~~----~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 223 RSKLMLIDFESNW----QTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CCceEEEECCCCC----ccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 5578899998732 11111112245679999988872 2233332 26788888876
No 463
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.67 E-value=52 Score=27.42 Aligned_cols=22 Identities=5% Similarity=0.158 Sum_probs=17.5
Q ss_pred CCCCEEEEEEcCCCCCEEEEee
Q 046899 287 HSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 287 h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
|..-.+.+++.|++..+++||-
T Consensus 227 ~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 227 NDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccccccceeecCcCCeEEEecC
Confidence 5567889999999877777774
No 464
>PHA02790 Kelch-like protein; Provisional
Probab=72.22 E-value=31 Score=33.25 Aligned_cols=103 Identities=7% Similarity=-0.046 Sum_probs=52.3
Q ss_pred cEEEEEeCCC-----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC--CcEEEEeCCCCCCCCCCCc
Q 046899 208 QEFCSVGDDS-----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD--NSIHMFDRRKLTSDGVGSP 280 (407)
Q Consensus 208 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d--g~i~vwd~~~~~~~~~~~~ 280 (407)
.+++.||.++ .+..||.++........+.........+. - ++.+.+.||.+ ..+..||..... +..
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~----W~~ 345 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAA----WVN 345 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCe----EEE
Confidence 5677777543 47778888765211111111111122222 2 66788888864 357788876521 333
Q ss_pred eeeecCCCCCEEEEEEcCCCCCEEEEeeCCC---eEEEEeCCC
Q 046899 281 IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG---ILNIWDHEK 320 (407)
Q Consensus 281 ~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~---~i~vwd~~~ 320 (407)
+..+.........+.. +|. |++.||.++ .+..||.++
T Consensus 346 ~~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 346 MPSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCC
Confidence 3333221111122222 444 777887653 466788765
No 465
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.99 E-value=1.3e+02 Score=31.16 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
.+...++|+|.+...||.....|.-.||++........ ..|.+.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~---------------~~~~~~--------------------- 189 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKS---------------SNLRLS--------------------- 189 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCC---------------cceeec---------------------
Confidence 46778999998888999999999999999932221110 001000
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH 243 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 243 (407)
....|.+ +.|... + ..-..|.|.++. +.|+.++ -..+.++|+++...............|.
T Consensus 190 ------~~~~gsi-~~d~~e---------~-s~w~rI~W~~~~-~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~Il 250 (765)
T PF10214_consen 190 ------RNISGSI-IFDPEE---------L-SNWKRILWVSDS-NRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWIL 250 (765)
T ss_pred ------cCCCccc-cCCCcc---------c-CcceeeEecCCC-CEEEEEc-CCceEEEECCCCCccchhccCCChhhee
Confidence 0011111 111111 1 344578888776 4566655 4689999999876322222233456788
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
.+.-+|.+..+++.-. ...|...|+...
T Consensus 251 Dv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 251 DVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred eEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 8888884344444433 367878888763
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=71.68 E-value=52 Score=30.84 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=67.6
Q ss_pred cEEEEEeCCCcEEEE-EcCCCCCCceee---ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee
Q 046899 208 QEFCSVGDDSCLILW-DARSGSTPAVKV---EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK 283 (407)
Q Consensus 208 ~~l~s~~~dg~i~iw-d~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~ 283 (407)
.-+..+..||.|.-| |++....+.... +.-...++..+.-.. +.+-+++-+..|.+..+.... .+++.
T Consensus 281 ~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~------~~~lL- 352 (733)
T COG4590 281 FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTS------EKLLL- 352 (733)
T ss_pred eeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeeccc------Cccee-
Confidence 457777888888765 666554332222 222234444444333 456677778888888876554 23322
Q ss_pred ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 284 FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 284 ~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
+..--..+.-+++||++.+++ .-..|.|+++.+++.....++
T Consensus 353 ~~~~~~~~~~~~~Sp~~~~Ll--~e~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 353 FERAYQAPQLVAMSPNQAYLL--SEDQGKIRLAQLENRNPEISW 394 (733)
T ss_pred hhhhhcCcceeeeCcccchhe--eecCCceEEEEecCCCCCccH
Confidence 222223567789999999875 345688999999986555444
No 467
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=70.17 E-value=39 Score=31.85 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=25.0
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
.|.+++..+ ..+.+++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 489999999 679999999999999999975
No 468
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=69.86 E-value=1.2e+02 Score=30.28 Aligned_cols=124 Identities=12% Similarity=0.144 Sum_probs=68.0
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec-ccC------cceEEEEecCCCCCEEEEEeC-C---C
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-AHN------ADIHCVDWNPHDVNLILTGSA-D---N 262 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~------~~v~~l~~~~~~~~~l~tg~~-d---g 262 (407)
...|..|.|.+++ ..+++.-.+|.|.+||............. .+. .-|....... ...++++-+. + -
T Consensus 129 ~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~-~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 129 DDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN-GKDLLLTVSQLSNSKL 206 (670)
T ss_pred ccceEEEEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc-CCceEEEEEEcCCCcE
Confidence 5788999999888 78888899999999999433211111111 111 1222222112 2345544443 2 2
Q ss_pred cEEEEeCCCCCCCCCCCceeeec---CCCCCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 263 SIHMFDRRKLTSDGVGSPIHKFE---GHSAAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 263 ~i~vwd~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
..+++.+... ...+.++. .+.......+|.. +|. |. -- .+++|.+|++...+...++
T Consensus 207 ~ykL~~l~~~-----~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY-~l-~~~~i~~ysip~f~~~~tI 267 (670)
T PF10395_consen 207 SYKLISLSNE-----SSSIFELSSTILENFGLEDSKFCYQFGK-LY-QL-SKKTISSYSIPNFQIQKTI 267 (670)
T ss_pred EEEEEEeccC-----CcceEEeehheeccCCcccceEEEeCCE-EE-EE-eCCEEEEEEcCCceEEEEE
Confidence 5677887221 24444443 2222333333433 444 43 22 6889999999887665554
No 469
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.31 E-value=1.5e+02 Score=30.23 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=30.1
Q ss_pred cccCEEEEEECCCC--CcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 193 HEDTVEDVQFCPSS--AQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 193 ~~~~v~~l~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
+...|..+.|+|.+ ...|+.=..|+++++||+...+.|
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCC
Confidence 45688999999974 256777788999999999876643
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.69 E-value=1.1e+02 Score=28.55 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=60.6
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC---ceeeec--ccCcceEEEEecCCCCCEEEEEeCCCcEEEEe
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP---AVKVEK--AHNADIHCVDWNPHDVNLILTGSADNSIHMFD 268 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 268 (407)
...+..+.+.+++ .+++++ .+|.+.. ....+..- ...... .....+..+.+.+ ++..+++ +..|.+....
T Consensus 280 ~~~l~~v~~~~dg-~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~-G~~G~v~~s~ 354 (398)
T PLN00033 280 ARRIQNMGWRADG-GLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAA-GGSGILLRST 354 (398)
T ss_pred ccceeeeeEcCCC-CEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEE-ECCCcEEEeC
Confidence 4567899999888 555544 5566443 33333210 011111 1223588899987 6665555 5577665553
Q ss_pred CCCCCCCCCCCceeee---cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 269 RRKLTSDGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
-. ++.-... ..-....+.+.|.++++ .++ .+.+|.|.-|
T Consensus 355 D~-------G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~-~G~~G~il~~ 396 (398)
T PLN00033 355 DG-------GKSWKRDKGADNIAANLYSVKFFDDKK-GFV-LGNDGVLLRY 396 (398)
T ss_pred CC-------CcceeEccccCCCCcceeEEEEcCCCc-eEE-EeCCcEEEEe
Confidence 22 2332222 22345788999987766 453 4557877554
No 471
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=66.11 E-value=23 Score=28.57 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=24.5
Q ss_pred cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 333 PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 333 ~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+..++|||. ..-...+-.|++.+.++.|.||.-.
T Consensus 87 ~vv~~aWSP~------------Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPS------------GLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCC------------CCCCCCceEEEEEcCCCeEEEEecC
Confidence 5677888886 2222235578888889999999765
No 472
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.52 E-value=1.1e+02 Score=27.83 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
..+.|+|.| +++++++ ...|.|++.+
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe
Confidence 467899999 7887766 4589999999
No 473
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=64.98 E-value=1.1e+02 Score=31.37 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=62.7
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--------ceEEEEecC---------------CCCCEEEEEeCCCcE
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--------DIHCVDWNP---------------HDVNLILTGSADNSI 264 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~l~~~~---------------~~~~~l~tg~~dg~i 264 (407)
..++.++.++.|.-.|.++++ ....+..... ....+.+-. .++..++.++.|+.+
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk--~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGK--EKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CEEEEECCCCeEEEEECCCCc--EEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 356667777888888888877 3333321110 011222211 023477888899999
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEE-------------EEEEcC---CCCCEEEEeeC----------CCeEEEEeC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVL-------------CVQWSP---DKSSVFGSSAE----------DGILNIWDH 318 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~-------------~v~~~~---~~~~ll~s~~~----------d~~i~vwd~ 318 (407)
.-.|.++ ++.+..+.. .+.|. .+.-.| ++. ++ .|+. +|.|+-+|+
T Consensus 273 iALDA~T------Gk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~-VI-vG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 273 IALDADT------GKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTT-VV-IGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred EEEECCC------CCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCE-EE-EEecccccccccCCCcEEEEEEC
Confidence 9999998 888876642 11110 111111 333 43 4532 688999999
Q ss_pred CCCCcccc
Q 046899 319 EKIGEKQD 326 (407)
Q Consensus 319 ~~~~~~~~ 326 (407)
++++.+=.
T Consensus 344 ~TGkl~W~ 351 (764)
T TIGR03074 344 NTGALVWA 351 (764)
T ss_pred CCCcEeeE
Confidence 98877643
No 474
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=64.61 E-value=17 Score=19.40 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=19.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCceee
Q 046899 253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHK 283 (407)
Q Consensus 253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~ 283 (407)
..+++++.+|.+..+|.++ ++.+.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~------G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKT------GEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEccc------CcEEEE
Confidence 3677888899999999988 666544
No 475
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=64.14 E-value=52 Score=27.51 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=38.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
..|+.+...+.|.+|++.... .+++.+|..- +.|..+.++..|.||+ |--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~----~~~~~~F~Tv-~~V~~l~y~~~GDYlv-TlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE----CPLLCTFSTV-GRVLQLVYSEAGDYLV-TLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC----CceeEEEcch-hheeEEEeccccceEE-EEEe
Confidence 444444666789999998433 6788888754 7899999999999984 6543
No 476
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=63.82 E-value=1.2e+02 Score=31.33 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=46.9
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC----Ccee---eec------CCCCCEEEEEEcCCCCCEEEE
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG----SPIH---KFE------GHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~----~~~~---~~~------~h~~~v~~v~~~~~~~~ll~s 306 (407)
..|.++.... -+.+++..-.||+|.++|..+.+..... .... .+. .+-.++..++|||.+..+ +.
T Consensus 260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~-v~ 337 (753)
T PF11635_consen 260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSL-VQ 337 (753)
T ss_pred CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceE-EE
Confidence 4566777666 5678899999999999998884321101 1111 110 012245568999999855 57
Q ss_pred eeCCCeEE
Q 046899 307 SAEDGILN 314 (407)
Q Consensus 307 ~~~d~~i~ 314 (407)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 77788866
No 477
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=62.58 E-value=1.1e+02 Score=31.24 Aligned_cols=147 Identities=10% Similarity=0.029 Sum_probs=81.3
Q ss_pred cccccCCCCCCCCCCCCcCce----eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---CCceeeecccC
Q 046899 167 NASKSGGNGDKPLESPSIGAR----GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS---TPAVKVEKAHN 239 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~----~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~ 239 (407)
...++.++.+.++........ .........+.++.+++.. +..|.-||++-.+=-.-.. .+....+..-.
T Consensus 550 ic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S---lgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~ 626 (925)
T KOG3522|consen 550 ICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS---LGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGS 626 (925)
T ss_pred ccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc---cccCccCCccccccCCCCCCCCCCCccccccCC
Confidence 344556666655543311111 1112234567777777643 5555666666554211110 00112222334
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee---cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
.+|.+.++.. + ++-|+.+|.|.++...+ ......+ ..|...|+++....++-+ ++-.....++++
T Consensus 627 lPvrsla~~e-d---~~was~gG~V~vi~~tt------~~~~~~leahqee~~~Vthm~~~~~gVw--vafasG~~~rlf 694 (925)
T KOG3522|consen 627 LPVRSLAFQE-D---FVWASEGGCVHVIPSTT------FIRSWDLEAHQEEAHSVTHMLYLDNGVW--VAFASGDEERLF 694 (925)
T ss_pred ccccchhhhh-c---eeeeecCCceEEEechh------ccccchhHHHHhhcceEEEEEeeCCceE--EEEcCCCEEEEe
Confidence 5777777764 3 45567799999999887 3333333 335678999999877754 344444567777
Q ss_pred eCCCCCcccccc
Q 046899 317 DHEKIGEKQDYG 328 (407)
Q Consensus 317 d~~~~~~~~~~~ 328 (407)
+.++..-.+.+.
T Consensus 695 htetl~hlqd~n 706 (925)
T KOG3522|consen 695 HTETLWHLQDSN 706 (925)
T ss_pred cccccCCccccc
Confidence 877766665543
No 478
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=61.37 E-value=72 Score=29.45 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=44.1
Q ss_pred EECCCCCcEEEEEeCCCc--EEEEEcCCCCCCceeeecccC-cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899 201 QFCPSSAQEFCSVGDDSC--LILWDARSGSTPAVKVEKAHN-ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV 277 (407)
Q Consensus 201 ~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~ 277 (407)
+|.++|..+|.++..||. +.+-|+.+++ ...+.... .......++| +.+.++-......++-.|+++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T------ 111 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDT------ 111 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCc------
Confidence 567888666666666665 5566777766 33443332 2233456678 566665555567889999998
Q ss_pred CCceeeecCCCCCEEEEEEc
Q 046899 278 GSPIHKFEGHSAAVLCVQWS 297 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~ 297 (407)
.+....+......+-...|.
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v 131 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWV 131 (386)
T ss_dssp --EEEEEE--TTEEEEEEEE
T ss_pred CcEEEEEECCccccccccee
Confidence 44433344445556556664
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=57.71 E-value=25 Score=34.98 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=44.3
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
...++++.-+| ++.-++.+..||+|++|+..... ...+.+. ..|-..+.|...| | ++...|..+.-|-
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~----qski~~~---~~p~~nlv~tnhg--l-~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRR----QSKICEE---AKPKENLVFTNHG--L-VTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeecccc----hhhhhhh---cCCccceeeeccc--e-EEEeccchhheee
Confidence 34567888889 89999999999999999976511 1112222 2234456666555 3 3566677776664
No 480
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=57.55 E-value=65 Score=22.69 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=25.5
Q ss_pred eCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899 214 GDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 214 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
..+|.+.-||..+++ ...+..--...+.|+.++ ++.+++.+
T Consensus 34 ~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~-d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSP-DESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTE---EEEEEEEESSEEEEEE-T-TSSEEEEE
T ss_pred CCCcCEEEEECCCCe---EEEehhCCCccCeEEEcC-CCCEEEEE
Confidence 346889999998877 223223334568999999 77766554
No 481
>PLN02153 epithiospecifier protein
Probab=56.66 E-value=1.1e+02 Score=27.73 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=14.0
Q ss_pred cEEEEEeCC-----------CcEEEEEcCCCC
Q 046899 208 QEFCSVGDD-----------SCLILWDARSGS 228 (407)
Q Consensus 208 ~~l~s~~~d-----------g~i~iwd~~~~~ 228 (407)
.+++.|+.+ ..+.+||..+.+
T Consensus 139 ~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 139 HVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred EEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 566666653 247788988765
No 482
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=55.54 E-value=35 Score=24.00 Aligned_cols=50 Identities=16% Similarity=0.063 Sum_probs=29.6
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 258 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
+..+|.+.-||..+ + ....+..-=.--+.|++++|+.+++++=..-..|.
T Consensus 33 ~~~~GRll~ydp~t------~-~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ 82 (89)
T PF03088_consen 33 GRPTGRLLRYDPST------K-ETTVLLDGLYFPNGVALSPDESFVLVAETGRYRIL 82 (89)
T ss_dssp T---EEEEEEETTT------T-EEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred CCCCcCEEEEECCC------C-eEEEehhCCCccCeEEEcCCCCEEEEEeccCceEE
Confidence 34567888899887 3 33333222235689999999998876555444443
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=54.97 E-value=1.6e+02 Score=30.11 Aligned_cols=96 Identities=10% Similarity=0.324 Sum_probs=53.0
Q ss_pred EEEEECCCCCcEEEEEeCCC-----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 198 EDVQFCPSSAQEFCSVGDDS-----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
..+.|-|+| ..+++-+.|| .|.++.-+-.+......-.+....+..++|+- ....++. .....+.+|-..+.
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav-~~~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAV-AEGNLLKLWTTKNY 326 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHH-hhcceEEEEEccce
Confidence 348899999 7888877554 35555433222111111123344566778876 4444443 34568999987763
Q ss_pred CCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899 273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 302 (407)
. +-...++. -..+.-+.|+|....
T Consensus 327 h----WYLK~e~~--ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 H----WYLKVERQ--IPGISYVKWHPEEKN 350 (1243)
T ss_pred E----EEEEEeec--CCCcceeeeccccCc
Confidence 2 22222222 345666788886543
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=54.50 E-value=1.8e+02 Score=26.95 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=74.8
Q ss_pred CEEEEEE--CC-CCCcEEEEEeCCCcEEEEEcCCCCC-----CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899 196 TVEDVQF--CP-SSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267 (407)
Q Consensus 196 ~v~~l~~--~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 267 (407)
.+..+|+ +| ++..+.+....+|.+.-|-+..... ..++.+. -.+.+-.+..+. ....|+.|-.+.-|.-|
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y 234 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVVDD-ETGRLYVGEEDVGIWRY 234 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEEec-ccCCEEEecCccEEEEE
Confidence 4566665 44 3445677788899998888753221 1234442 345788888888 67788899988888888
Q ss_pred eCCCCCCCCCCCceeeecC--CCCCEEEEEEc--CCC-CCEEEEeeCCCeEEEEeCCC
Q 046899 268 DRRKLTSDGVGSPIHKFEG--HSAAVLCVQWS--PDK-SSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~--~~~-~~ll~s~~~d~~i~vwd~~~ 320 (407)
+.+..... .+..+....+ ...-|-.|+.- +++ .||++|.-.+++..|||.+.
T Consensus 235 ~Aep~~~~-~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 235 DAEPEGGN-DRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp ESSCCC-S---EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ecCCCCCC-cceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 87642211 0223333322 34567778774 333 47888888899999999875
No 485
>PRK10115 protease 2; Provisional
Probab=52.17 E-value=2.8e+02 Score=28.33 Aligned_cols=74 Identities=5% Similarity=-0.012 Sum_probs=39.7
Q ss_pred EEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC---CCcEEEEeC
Q 046899 198 EDVQFCPSSAQEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA---DNSIHMFDR 269 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~ 269 (407)
..++|.+++..++++...+ ..|..+++.++.......+........-..+.+.++.+++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 3589998885555554432 36788888877321233333322323322232326666554433 357888886
Q ss_pred CC
Q 046899 270 RK 271 (407)
Q Consensus 270 ~~ 271 (407)
..
T Consensus 255 ~~ 256 (686)
T PRK10115 255 EL 256 (686)
T ss_pred cC
Confidence 44
No 486
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=51.74 E-value=40 Score=18.96 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=21.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286 (407)
Q Consensus 254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 286 (407)
.+..++.+|.+.-.|.++ ++.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~T------G~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKT------GKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTT------TSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCC------CCEEEeeeC
Confidence 355668899999999999 888877764
No 487
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=51.14 E-value=1.9e+02 Score=26.54 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=56.8
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCceeeeccc--CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899 209 EFCSVGDDSCLILWDARSGSTPAVKVEKAH--NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286 (407)
Q Consensus 209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 286 (407)
.+..+..+|.|.-.|..++.. ......- ...+.+-.... +++ ++.++.+|.+..+|.++ ++.+.....
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~--~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~------G~~~W~~~~ 139 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLV--KWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDAST------GTLVWSRNV 139 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcE--EecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCC------CcEEEEEec
Confidence 455557788888888887772 2211111 11222222222 444 77888899889999976 788877766
Q ss_pred CC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 287 HS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 287 h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
.. ..+..-..-.++. ++ .++.++.+.-.|..+++.
T Consensus 140 ~~~~~~~~~~v~~~~~-v~-~~s~~g~~~al~~~tG~~ 175 (370)
T COG1520 140 GGSPYYASPPVVGDGT-VY-VGTDDGHLYALNADTGTL 175 (370)
T ss_pred CCCeEEecCcEEcCcE-EE-EecCCCeEEEEEccCCcE
Confidence 55 1122222222333 22 333566676666666554
No 488
>PLN02193 nitrile-specifier protein
Probab=51.01 E-value=2.1e+02 Score=27.50 Aligned_cols=156 Identities=6% Similarity=-0.078 Sum_probs=0.0
Q ss_pred CCcEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc-----EEEEeCCCCCCC
Q 046899 206 SAQEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS-----IHMFDRRKLTSD 275 (407)
Q Consensus 206 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~-----i~vwd~~~~~~~ 275 (407)
+..+++.|+.+ ..+..||+.+.+...+........+-...+....++++++.|+.++. +..||+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-- 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK-- 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE--
Q ss_pred CCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC----CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccce
Q 046899 276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED----GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLL 351 (407)
Q Consensus 276 ~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~ 351 (407)
+..+........+-......--+..+++.++.+ ..+.+||+.+.+-.+.-.....|...... .
T Consensus 306 --W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~---~-------- 372 (470)
T PLN02193 306 --WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF---A-------- 372 (470)
T ss_pred --EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee---E--------
Q ss_pred eeeeEeeCccceeeeEEEe-------------eeEEEeecc
Q 046899 352 TSIGMHLIHGRLLVCLTMV-------------KVLEIWRMI 379 (407)
Q Consensus 352 ~~~~~~~~~~~~i~~~~~d-------------~~i~iwd~~ 379 (407)
.+..+..-+|+-|..+ ..+.++|..
T Consensus 373 ---~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 373 ---SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred ---EEEECCEEEEECCccCCccccccCccceeccEEEEEcC
No 489
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=50.37 E-value=1.4e+02 Score=28.87 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=53.3
Q ss_pred cEEEEEeCCC------cEEEEEcCCCCCCceeeecc-cCcceEEEEecCCCCCEEEEEeCC------CcEEEEeCCCCCC
Q 046899 208 QEFCSVGDDS------CLILWDARSGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTGSAD------NSIHMFDRRKLTS 274 (407)
Q Consensus 208 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg~~d------g~i~vwd~~~~~~ 274 (407)
.+++-|+.+. .|..+|+.+.+......... -.......+... +..+++.|+.+ ..+.++|+.+..
T Consensus 124 ~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~~- 201 (482)
T KOG0379|consen 124 KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETST- 201 (482)
T ss_pred eEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcccceeeeeeecccccc-
Confidence 5777777775 78999999887432222211 011111122222 44566666543 357888888744
Q ss_pred CCCCCceeeecCCCCCE--EEEEEcCCCCCEEEEeeCC------CeEEEEeCCCCC
Q 046899 275 DGVGSPIHKFEGHSAAV--LCVQWSPDKSSVFGSSAED------GILNIWDHEKIG 322 (407)
Q Consensus 275 ~~~~~~~~~~~~h~~~v--~~v~~~~~~~~ll~s~~~d------~~i~vwd~~~~~ 322 (407)
+..+.+...-..+- ..++.. .++ +++.++.+ +.+.+.|+.+.+
T Consensus 202 ---W~~~~~~g~~P~pR~gH~~~~~-~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~ 252 (482)
T KOG0379|consen 202 ---WSELDTQGEAPSPRYGHAMVVV-GNK-LLVFGGGDDGDVYLNDVHILDLSTWE 252 (482)
T ss_pred ---ceecccCCCCCCCCCCceEEEE-CCe-EEEEeccccCCceecceEeeecccce
Confidence 43333332111111 111111 233 44566666 346677777643
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.03 E-value=32 Score=19.56 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 046899 251 DVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~ 271 (407)
.+..++.++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 345788889999999999763
No 491
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=49.77 E-value=3.5e+02 Score=28.77 Aligned_cols=273 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred eeecccCCCeeEEEE-eecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcE
Q 046899 30 LANHNLVWPSLSCRW-GPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDV 108 (407)
Q Consensus 30 l~~~~~~~p~~s~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i 108 (407)
+....++|++-.+.. .|........+..+++ .-.+.......+...+....+.+..+| ...+|+.+-.|...
T Consensus 725 Isy~~l~~as~~~S~qcpeGiv~i~~n~l~i~------~~~~~g~~~n~~~~~l~~tprkvv~h~-es~lLii~~td~~~ 797 (1205)
T KOG1898|consen 725 ISYSTLEHASPFCSEQCPEGIVAISKNTLRII------ALDKLGKVLNVDGFPLAYTPRKVVIHP-ESGLLIIGRTDHNA 797 (1205)
T ss_pred ccccchhccccccccCCCcchhhhhhhhhhee------eehhhcccccccccccccCcceEEEec-CCCeEEEEEecccc
Q ss_pred EEEeCcCCCCcccccCcCCCCCCC-----CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899 109 LIWDVEAQPNRHAVLGAADSHPDL-----DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS 183 (407)
Q Consensus 109 ~vwd~~~~~~~~~~~~~~~~~~~~-----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 183 (407)
.. .....+.+...+........ .+.+.+-..++ ..+.......-+..+--..|++.|..+
T Consensus 798 ~~--~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~-------------~~~~~v~~~p~a~~~w~s~I~~~d~~s 862 (1205)
T KOG1898|consen 798 TL--TKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREE-------------VLPENVYGSPRAGNGWVSSIRVFDPKS 862 (1205)
T ss_pred hh--hHHHhhhhhhcccccccccccchhhccchhhhcccc-------------ccccccccCcccccCccceEEEEcCCC
Q ss_pred cCceeeEeeccc----CEEEEEECCCCCc-EEEEEeC-----------CCcEEEEEcCCCCCCceeeecccCcceEEEEe
Q 046899 184 IGARGKYLGHED----TVEDVQFCPSSAQ-EFCSVGD-----------DSCLILWDARSGSTPAVKVEKAHNADIHCVDW 247 (407)
Q Consensus 184 ~~~~~~~~~~~~----~v~~l~~~~~~~~-~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 247 (407)
++.+..+.-..+ .+..+.|+..+.. ++++|.. +|.++.|++-.... ....+....-+-.-.+.
T Consensus 863 ~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~lellh~T~~~~~v~Ai 941 (1205)
T KOG1898|consen 863 GKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLELLHKTEIPGPVGAI 941 (1205)
T ss_pred CceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eeeeeeccCCCccceEE
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 248 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
.|..+.+++..+ ..+++||+-. .++++..+...-+..=....-.+.++++.-..++...+---+...++..+
T Consensus 942 ~~f~~~~LagvG--~~l~~YdlG~------K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~f 1013 (1205)
T KOG1898|consen 942 CPFQGRVLAGVG--RFLRLYDLGK------KKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVF 1013 (1205)
T ss_pred eccCCEEEEecc--cEEEEeeCCh------HHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEE
Q ss_pred ccCCCc
Q 046899 328 GELKYP 333 (407)
Q Consensus 328 ~~~~~~ 333 (407)
.....|
T Consensus 1014 adD~~p 1019 (1205)
T KOG1898|consen 1014 ADDPVP 1019 (1205)
T ss_pred eCCCcc
No 492
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=49.51 E-value=3.4e+02 Score=28.58 Aligned_cols=77 Identities=10% Similarity=0.058 Sum_probs=46.7
Q ss_pred ccCEEEEEECCC--CCc---EEEEEeCCCcEEEEEcCCCCCCceeee---cccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 194 EDTVEDVQFCPS--SAQ---EFCSVGDDSCLILWDARSGSTPAVKVE---KAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 194 ~~~v~~l~~~~~--~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
+..|.|+.++|. +++ +++.|.++..+.+--.-.......... ..-+..|.-..+-- +..+|.++..||.+.
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALL 608 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEE
Confidence 568999999975 444 888998877665543322221011111 11233444455544 578999999999988
Q ss_pred EEeCCC
Q 046899 266 MFDRRK 271 (407)
Q Consensus 266 vwd~~~ 271 (407)
.|-+..
T Consensus 609 ~fv~d~ 614 (1096)
T KOG1897|consen 609 YFVLDI 614 (1096)
T ss_pred EEEEEc
Confidence 776554
No 493
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=48.72 E-value=2.2e+02 Score=29.74 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE-EeCCC-----cEEEEeCCCCCCCCCCCceeeecCCCC
Q 046899 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT-GSADN-----SIHMFDRRKLTSDGVGSPIHKFEGHSA 289 (407)
Q Consensus 216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t-g~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~h~~ 289 (407)
.+.|.+-|..... .......+..+|.+-+|+| |++.|+- .+.++ .|++-|+++.. .-+-.+...+.
T Consensus 328 ~~~L~~~D~dG~n--~~~ve~~~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~-----~~~vkl~ve~a 399 (912)
T TIGR02171 328 TGNLAYIDYTKGA--SRAVEIEDTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASG-----SGLVKLPVENA 399 (912)
T ss_pred CCeEEEEecCCCC--ceEEEecCCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccC-----CCceEeecccc
Confidence 3578888877655 2223246688899999999 8888876 44444 48888888743 33445554566
Q ss_pred CEEEEEEcCCCCCEEE
Q 046899 290 AVLCVQWSPDKSSVFG 305 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~ 305 (407)
.|..-...++|...|+
T Consensus 400 aiprwrv~e~gdt~iv 415 (912)
T TIGR02171 400 AIPRWRVLENGDTVIV 415 (912)
T ss_pred cccceEecCCCCeEEE
Confidence 6766677777766543
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=47.62 E-value=1.8e+02 Score=25.00 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=46.1
Q ss_pred EEEEcCCCCCCceeeecc-cCcceEEEEecCCCCCEEEEEeC-C--CcEEEEeCCCCCCCCCCCce-eeecCCCCCEEEE
Q 046899 220 ILWDARSGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTGSA-D--NSIHMFDRRKLTSDGVGSPI-HKFEGHSAAVLCV 294 (407)
Q Consensus 220 ~iwd~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg~~-d--g~i~vwd~~~~~~~~~~~~~-~~~~~h~~~v~~v 294 (407)
.+||+.+.+ .+.+.. ......+=.+-+ +|+++.+|+. + ..+++|+.........+... ..+. ...+--++
T Consensus 49 ~~yD~~tn~---~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~ 123 (243)
T PF07250_consen 49 VEYDPNTNT---FRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTA 123 (243)
T ss_pred EEEecCCCc---EEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccc
Confidence 468888776 222221 122222334567 8999999876 3 35888886541100001100 1111 22344455
Q ss_pred EEcCCCCCEEEEeeCC-CeEEEEeC
Q 046899 295 QWSPDKSSVFGSSAED-GILNIWDH 318 (407)
Q Consensus 295 ~~~~~~~~ll~s~~~d-~~i~vwd~ 318 (407)
.--|||+.|+ .|+.+ .+..+|.-
T Consensus 124 ~~L~DG~vlI-vGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 124 TTLPDGRVLI-VGGSNNPTYEFWPP 147 (243)
T ss_pred eECCCCCEEE-EeCcCCCcccccCC
Confidence 5667999554 55544 34444443
No 495
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=47.04 E-value=1.6e+02 Score=27.55 Aligned_cols=32 Identities=6% Similarity=0.269 Sum_probs=24.1
Q ss_pred CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 288 SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 288 ~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
.+.+..++ ..|.+|+++-+.+..|.+|.+...
T Consensus 430 ~~~i~~ls--~gGdRlfv~rs~~~~v~vw~~~~~ 461 (465)
T KOG2714|consen 430 GGLIVRLS--SGGDRLFVVRSVESPVTVWEVLEC 461 (465)
T ss_pred CCcEEEEe--cCCeeEEEEEeccCceeEEEecCC
Confidence 44565554 477779999999999999987653
No 496
>PRK13684 Ycf48-like protein; Provisional
Probab=46.69 E-value=2.3e+02 Score=25.78 Aligned_cols=112 Identities=7% Similarity=0.085 Sum_probs=61.0
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-Cceeee-cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-PAVKVE-KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
...++++.+.+++ ..++. +..|.+.+=....+.. ...... ......+..+.+.| ++..+++ +.+|.+.. ....
T Consensus 214 ~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~v~~-S~d~ 288 (334)
T PRK13684 214 SRRLQSMGFQPDG-NLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGTLLV-SKDG 288 (334)
T ss_pred cccceeeeEcCCC-CEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEE-cCCCeEEE-eCCC
Confidence 4578899999988 55555 4567665322333321 001110 11223577889988 6666555 45675543 2332
Q ss_pred CCCCCCCCceeeec---CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 272 LTSDGVGSPIHKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 272 ~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
++.-.... .-....+.+.|..++. .++ .+..|.|--|+-
T Consensus 289 ------G~tW~~~~~~~~~~~~~~~~~~~~~~~-~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 289 ------GKTWEKDPVGEEVPSNFYKIVFLDPEK-GFV-LGQRGVLLRYVG 330 (334)
T ss_pred ------CCCCeECCcCCCCCcceEEEEEeCCCc-eEE-ECCCceEEEecC
Confidence 22222222 2224578888887766 454 455788877763
No 497
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=45.97 E-value=1.9e+02 Score=27.06 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=66.1
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEee----cccCEEEEEECCCCCcEEEEE-------eCCCcEEEEEcCCCCCCcee
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLG----HEDTVEDVQFCPSSAQEFCSV-------GDDSCLILWDARSGSTPAVK 233 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~ 233 (407)
..+...+..+.|-+|+..+.+....... ..+...-+.|.+.. ++++.. ..++.|++||.+....
T Consensus 236 ~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~-~~li~~~~fp~~~kdN~~i~~~d~Rd~n~---- 310 (465)
T KOG2714|consen 236 TQLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGS-NLLIDSQKFPLRMKDNDLIVTEDFRDRNT---- 310 (465)
T ss_pred hhhhhccccccccccchhhhceeeeeeccCccccCChhhhccccCc-eeEEEEeeccccccCCceEEEeeccCCCc----
Confidence 3445567788899999887743322221 12344456777655 443332 2467889999887651
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
+..|. .++.|+..+.+++-+.-............++..|..+.. ++-.+...+.+
T Consensus 311 ----------~~~W~-----~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~----------~idv~~~~~~~ 365 (465)
T KOG2714|consen 311 ----------SGNWI-----EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG----------LIDVCSDGGHV 365 (465)
T ss_pred ----------cceEE-----EecCCccccceEeeeccccccCCCCeEEEEEEecCCCcc----------eeehhhhCCcc
Confidence 12332 234445555666655443222111334455555555511 22233444557
Q ss_pred EEEeCCCC
Q 046899 314 NIWDHEKI 321 (407)
Q Consensus 314 ~vwd~~~~ 321 (407)
++|.+...
T Consensus 366 ~~~~~tr~ 373 (465)
T KOG2714|consen 366 RVWNSTRF 373 (465)
T ss_pred eEEeeccc
Confidence 77766543
No 498
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=45.82 E-value=44 Score=17.33 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=17.9
Q ss_pred eEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 86 VNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 86 v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
...|+..+ +|+++++=.....|+++
T Consensus 4 P~gvav~~-~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDS-DGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred CcEEEEeC-CCCEEEEECCCCEEEEC
Confidence 46677776 88888777777777664
No 499
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=45.35 E-value=1.4e+02 Score=22.95 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=43.8
Q ss_pred ccCEEEEEECC----CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC---CCCEEEEEeCCCcEEE
Q 046899 194 EDTVEDVQFCP----SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH---DVNLILTGSADNSIHM 266 (407)
Q Consensus 194 ~~~v~~l~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~tg~~dg~i~v 266 (407)
...|++|+--+ ++...|+.|+ ...|..||+.+.. ....+.-...|+++.+... ...++++| .+..|.-
T Consensus 47 n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~---d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~G 121 (136)
T PF14781_consen 47 NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS---DLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQG 121 (136)
T ss_pred CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc---hhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEE
Confidence 34555554332 2335677766 4689999998776 2233445577888777321 23444454 4677888
Q ss_pred EeCCC
Q 046899 267 FDRRK 271 (407)
Q Consensus 267 wd~~~ 271 (407)
||..-
T Consensus 122 fd~~G 126 (136)
T PF14781_consen 122 FDYEG 126 (136)
T ss_pred eCCCC
Confidence 88764
No 500
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=43.68 E-value=1.2e+02 Score=26.98 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=50.1
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-Ccc----eEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NAD----IHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~----v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
-+++|...++| ++|+|.-.-..|.+.|-++++ .+..+.+. .+. -...+|-. +.+++-.+..++.|.+||=.
T Consensus 145 HiNsV~~~~~G-~yLiS~R~~~~i~~I~~~tG~--I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDG-DYLISSRNTSTIYKIDPSTGK--IIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCc-cEEEEecccCEEEEEECCCCc--EEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcCC
Confidence 46777877888 899999888899999988887 55555443 111 11244444 66666666788999999974
Q ss_pred C
Q 046899 271 K 271 (407)
Q Consensus 271 ~ 271 (407)
.
T Consensus 221 ~ 221 (299)
T PF14269_consen 221 N 221 (299)
T ss_pred C
Confidence 3
Done!