Query 046899
Match_columns 407
No_of_seqs 430 out of 3991
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 09:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xyi_A Probable histone-bindin 100.0 1E-45 3.5E-50 347.3 26.4 329 7-384 16-414 (430)
2 1vyh_C Platelet-activating fac 100.0 4.6E-42 1.6E-46 320.2 26.3 274 76-378 101-409 (410)
3 3ow8_A WD repeat-containing pr 100.0 2.8E-41 9.4E-46 304.5 29.0 284 34-379 30-320 (321)
4 2ynn_A Coatomer subunit beta'; 100.0 5.6E-42 1.9E-46 306.8 21.3 270 78-407 8-280 (304)
5 3ow8_A WD repeat-containing pr 100.0 3.5E-42 1.2E-46 310.4 18.3 267 80-407 29-300 (321)
6 4gqb_B Methylosome protein 50; 100.0 6.1E-41 2.1E-45 304.7 25.5 286 39-380 33-331 (344)
7 4g56_B MGC81050 protein; prote 100.0 2.4E-41 8.2E-46 309.5 22.9 274 80-379 39-342 (357)
8 1got_B GT-beta; complex (GTP-b 100.0 9E-41 3.1E-45 303.8 26.4 271 76-377 48-340 (340)
9 2pbi_B Guanine nucleotide-bind 100.0 1.1E-39 3.7E-44 298.2 28.8 273 76-377 57-354 (354)
10 3iz6_a 40S ribosomal protein R 100.0 1E-39 3.6E-44 301.3 28.2 276 76-379 59-374 (380)
11 1nr0_A Actin interacting prote 100.0 5.5E-40 1.9E-44 321.7 24.9 350 38-407 20-501 (611)
12 2ymu_A WD-40 repeat protein; u 100.0 1.1E-39 3.7E-44 317.7 26.7 339 15-407 203-559 (577)
13 4gqb_B Methylosome protein 50; 100.0 1.1E-40 3.7E-45 303.0 18.0 276 81-407 28-309 (344)
14 1nr0_A Actin interacting prote 100.0 7.9E-40 2.7E-44 320.5 23.3 327 36-407 147-591 (611)
15 4ery_A WD repeat-containing pr 100.0 3.1E-38 1.1E-42 283.5 25.5 274 75-407 15-289 (312)
16 2ymu_A WD-40 repeat protein; u 100.0 2.5E-37 8.6E-42 301.0 30.0 318 13-377 242-577 (577)
17 2ynn_A Coatomer subunit beta'; 100.0 4.4E-37 1.5E-41 275.0 28.5 283 36-379 13-301 (304)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-38 2.3E-42 285.3 23.4 290 38-379 18-334 (345)
19 1erj_A Transcriptional repress 100.0 6.9E-38 2.4E-42 290.5 22.7 287 76-407 57-362 (393)
20 1vyh_C Platelet-activating fac 100.0 2.8E-37 9.6E-42 287.9 26.2 267 34-319 106-410 (410)
21 2pm9_A Protein WEB1, protein t 100.0 3.6E-38 1.2E-42 294.3 20.0 296 52-379 42-413 (416)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.7E-38 3E-42 284.6 20.4 279 77-407 9-313 (345)
23 3frx_A Guanine nucleotide-bind 100.0 9.8E-37 3.4E-41 274.6 26.9 285 34-379 15-316 (319)
24 2xzm_R RACK1; ribosome, transl 100.0 2.1E-37 7.1E-42 282.0 22.3 284 76-407 14-319 (343)
25 3frx_A Guanine nucleotide-bind 100.0 2.6E-37 8.8E-42 278.4 21.5 275 76-407 10-296 (319)
26 2pm7_B Protein transport prote 100.0 1.7E-36 5.8E-41 270.2 25.3 251 79-379 5-284 (297)
27 2hes_X YDR267CP; beta-propelle 100.0 8.9E-37 3E-41 276.2 22.6 291 35-379 13-327 (330)
28 4aow_A Guanine nucleotide-bind 100.0 4.7E-36 1.6E-40 272.2 25.8 272 78-379 33-336 (340)
29 1erj_A Transcriptional repress 100.0 5.9E-36 2E-40 277.5 26.4 317 14-379 40-388 (393)
30 4ery_A WD repeat-containing pr 100.0 1.5E-35 5.1E-40 266.0 27.6 282 34-379 21-311 (312)
31 1got_B GT-beta; complex (GTP-b 100.0 1.3E-35 4.5E-40 269.7 27.4 264 34-317 53-340 (340)
32 2hes_X YDR267CP; beta-propelle 100.0 1.7E-36 5.9E-41 274.3 20.7 270 77-407 8-305 (330)
33 1r5m_A SIR4-interacting protei 100.0 1.2E-35 4.1E-40 277.5 25.6 317 30-379 39-424 (425)
34 2xzm_R RACK1; ribosome, transl 100.0 2.5E-35 8.4E-40 268.3 26.8 284 35-379 20-339 (343)
35 2j04_B YDR362CP, TAU91; beta p 100.0 9.2E-36 3.1E-40 284.0 23.3 303 48-407 176-493 (524)
36 3iz6_a 40S ribosomal protein R 100.0 7.1E-35 2.4E-39 269.0 28.3 269 34-322 64-377 (380)
37 1gxr_A ESG1, transducin-like e 100.0 9.5E-35 3.2E-39 263.0 26.3 272 74-379 42-336 (337)
38 2oaj_A Protein SNI1; WD40 repe 100.0 7.8E-36 2.7E-40 303.0 21.2 339 29-407 10-585 (902)
39 1r5m_A SIR4-interacting protei 100.0 4.8E-36 1.6E-40 280.2 17.4 295 75-407 37-404 (425)
40 4aez_A CDC20, WD repeat-contai 100.0 2.2E-34 7.6E-39 267.7 27.9 289 36-394 93-388 (401)
41 3bg1_A Protein SEC13 homolog; 100.0 8.2E-36 2.8E-40 268.2 17.0 251 79-379 9-292 (316)
42 3k26_A Polycomb protein EED; W 100.0 1.7E-35 5.7E-40 271.1 19.3 305 23-379 3-365 (366)
43 2pm9_A Protein WEB1, protein t 100.0 6.9E-36 2.3E-40 278.8 17.0 274 82-382 11-339 (416)
44 1sq9_A Antiviral protein SKI8; 100.0 8.3E-35 2.8E-39 269.9 24.0 301 34-379 14-394 (397)
45 3i2n_A WD repeat-containing pr 100.0 1.5E-34 5E-39 264.0 25.1 301 23-379 6-352 (357)
46 2pbi_B Guanine nucleotide-bind 100.0 3.6E-34 1.2E-38 261.6 27.1 264 34-317 62-354 (354)
47 3zwl_B Eukaryotic translation 100.0 1.4E-34 4.6E-39 265.2 24.4 279 71-379 20-345 (369)
48 4gga_A P55CDC, cell division c 100.0 4E-34 1.4E-38 267.6 27.9 279 41-380 110-395 (420)
49 4h5i_A Guanine nucleotide-exch 100.0 1.5E-34 5.2E-39 265.1 24.4 290 82-397 13-362 (365)
50 4e54_B DNA damage-binding prot 100.0 5.4E-35 1.8E-39 274.7 21.9 275 78-379 114-429 (435)
51 4g56_B MGC81050 protein; prote 100.0 4.7E-34 1.6E-38 261.1 27.0 273 36-325 42-348 (357)
52 2oaj_A Protein SNI1; WD40 repe 100.0 3.5E-35 1.2E-39 298.2 21.4 354 14-406 39-631 (902)
53 3dm0_A Maltose-binding peripla 100.0 4.3E-34 1.5E-38 284.2 27.7 285 35-379 381-692 (694)
54 3v7d_B Cell division control p 100.0 6.2E-34 2.1E-38 269.7 27.2 315 16-406 102-442 (464)
55 3odt_A Protein DOA1; ubiquitin 100.0 2.2E-34 7.5E-39 257.9 22.2 266 75-380 10-296 (313)
56 3ei3_B DNA damage-binding prot 100.0 4.5E-34 1.5E-38 263.9 24.6 273 76-379 66-381 (383)
57 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-34 8E-39 303.9 25.5 348 15-407 638-1137(1249)
58 3vl1_A 26S proteasome regulato 100.0 3.8E-35 1.3E-39 274.3 16.8 301 41-407 61-395 (420)
59 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-34 3.6E-39 306.5 20.4 353 15-407 724-1188(1249)
60 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-33 8.3E-38 264.3 27.4 315 16-379 100-441 (445)
61 1k8k_C P40, ARP2/3 complex 41 100.0 3.8E-34 1.3E-38 262.9 20.5 269 81-379 6-360 (372)
62 3dm0_A Maltose-binding peripla 100.0 4.5E-34 1.6E-38 284.0 22.2 249 77-380 376-632 (694)
63 1sq9_A Antiviral protein SKI8; 100.0 7.7E-35 2.7E-39 270.1 15.5 267 79-407 12-364 (397)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7E-34 2.4E-38 268.0 21.4 283 77-407 112-417 (445)
65 3k26_A Polycomb protein EED; W 100.0 5.6E-34 1.9E-38 260.9 19.7 274 81-407 16-345 (366)
66 1pgu_A Actin interacting prote 100.0 9.7E-34 3.3E-38 277.5 22.4 337 14-407 183-594 (615)
67 3i2n_A WD repeat-containing pr 100.0 6.1E-34 2.1E-38 259.9 18.5 285 71-407 6-331 (357)
68 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-33 8.1E-38 260.8 22.7 281 28-407 26-323 (402)
69 4ggc_A P55CDC, cell division c 100.0 2.4E-32 8.3E-37 245.3 27.8 279 41-380 30-315 (318)
70 3jrp_A Fusion protein of prote 100.0 3.9E-33 1.3E-37 256.5 22.1 252 79-379 7-286 (379)
71 4aow_A Guanine nucleotide-bind 100.0 1.5E-32 5.3E-37 249.0 25.5 272 34-322 36-339 (340)
72 3dwl_C Actin-related protein 2 100.0 6.8E-34 2.3E-38 262.0 16.1 249 81-379 9-280 (377)
73 4a11_B DNA excision repair pro 100.0 9.3E-33 3.2E-37 256.6 23.8 282 80-394 40-373 (408)
74 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-32 9.2E-37 256.4 26.7 288 16-379 113-413 (435)
75 3dwl_C Actin-related protein 2 100.0 2.6E-33 9E-38 258.0 19.3 239 37-319 12-280 (377)
76 2j04_B YDR362CP, TAU91; beta p 100.0 5E-34 1.7E-38 272.1 13.6 266 76-379 126-427 (524)
77 3mkq_A Coatomer beta'-subunit; 100.0 1.9E-33 6.6E-38 284.5 18.6 271 77-407 7-280 (814)
78 3f3f_A Nucleoporin SEH1; struc 100.0 1E-32 3.5E-37 250.3 21.2 251 79-379 7-336 (351)
79 3vl1_A 26S proteasome regulato 100.0 2.9E-34 9.9E-39 268.3 11.2 259 85-406 58-344 (420)
80 1gxr_A ESG1, transducin-like e 100.0 4.6E-33 1.6E-37 251.9 17.8 288 81-407 7-316 (337)
81 3gre_A Serine/threonine-protei 100.0 5.3E-33 1.8E-37 261.3 18.5 284 18-380 47-359 (437)
82 3dw8_B Serine/threonine-protei 100.0 4.2E-33 1.4E-37 262.5 17.2 254 81-379 26-372 (447)
83 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-31 4.6E-36 271.0 25.8 269 36-323 13-305 (814)
84 1pgu_A Actin interacting prote 100.0 3.8E-32 1.3E-36 266.2 20.5 289 81-405 16-347 (615)
85 4aez_A CDC20, WD repeat-contai 100.0 2.2E-32 7.4E-37 254.2 15.7 263 81-407 89-359 (401)
86 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-31 4.4E-36 251.7 21.1 254 81-406 131-394 (435)
87 1yfq_A Cell cycle arrest prote 100.0 4.7E-31 1.6E-35 239.5 22.5 258 35-404 10-301 (342)
88 4gq1_A NUP37; propeller, trans 100.0 1.1E-31 3.7E-36 248.7 18.2 300 35-407 14-369 (393)
89 3jro_A Fusion protein of prote 100.0 7.8E-32 2.7E-36 269.7 18.4 252 79-379 5-284 (753)
90 2pm7_B Protein transport prote 100.0 1.1E-31 3.7E-36 239.1 17.2 232 154-407 11-264 (297)
91 3odt_A Protein DOA1; ubiquitin 100.0 6.9E-30 2.3E-34 228.6 26.8 267 35-327 17-303 (313)
92 3mmy_A MRNA export factor; mRN 100.0 5.6E-31 1.9E-35 241.0 20.0 236 71-407 27-325 (368)
93 3zwl_B Eukaryotic translation 100.0 6.1E-30 2.1E-34 234.2 26.8 272 33-326 29-352 (369)
94 4e54_B DNA damage-binding prot 100.0 1.8E-30 6.2E-35 243.9 23.6 268 38-323 121-433 (435)
95 2w18_A PALB2, fancn, partner a 100.0 1.8E-30 6.3E-35 228.1 21.1 217 82-378 110-355 (356)
96 3bg1_A Protein SEC13 homolog; 100.0 1.3E-30 4.4E-35 234.3 20.6 252 35-320 12-293 (316)
97 4gga_A P55CDC, cell division c 100.0 1.3E-30 4.3E-35 243.8 20.7 265 84-407 106-374 (420)
98 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-30 4.8E-35 236.8 20.1 224 95-379 47-291 (343)
99 3dw8_B Serine/threonine-protei 100.0 4.4E-30 1.5E-34 241.9 23.8 276 36-324 28-377 (447)
100 3gre_A Serine/threonine-protei 100.0 3.5E-31 1.2E-35 248.8 16.2 220 80-397 60-303 (437)
101 1k8k_C P40, ARP2/3 complex 41 100.0 3.1E-30 1.1E-34 236.8 21.4 277 35-324 7-365 (372)
102 3v7d_B Cell division control p 100.0 2.4E-29 8.4E-34 238.1 28.0 294 14-340 142-442 (464)
103 2j04_A TAU60, YPL007P, hypothe 100.0 5.5E-31 1.9E-35 245.9 15.4 256 82-379 14-296 (588)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-30 4E-35 246.3 17.7 288 83-407 4-364 (450)
105 4h5i_A Guanine nucleotide-exch 100.0 5.9E-30 2E-34 234.6 20.6 273 32-320 10-343 (365)
106 3ei3_B DNA damage-binding prot 100.0 3E-29 1E-33 231.5 25.0 278 19-320 58-382 (383)
107 4a11_B DNA excision repair pro 100.0 4.8E-29 1.6E-33 231.5 25.7 331 13-379 22-404 (408)
108 3vu4_A KMHSV2; beta-propeller 100.0 6.8E-30 2.3E-34 233.3 19.4 281 80-379 16-335 (355)
109 3f3f_A Nucleoporin SEH1; struc 100.0 5.2E-29 1.8E-33 225.9 24.0 270 35-327 10-344 (351)
110 4ggc_A P55CDC, cell division c 100.0 1.3E-29 4.4E-34 227.5 19.6 264 85-407 27-294 (318)
111 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-29 7.6E-34 228.9 20.4 269 47-379 50-332 (343)
112 3mmy_A MRNA export factor; mRN 100.0 6.4E-29 2.2E-33 227.3 22.2 286 35-379 38-345 (368)
113 2xyi_A Probable histone-bindin 100.0 5.8E-28 2E-32 226.4 28.0 266 33-321 125-411 (430)
114 4gq1_A NUP37; propeller, trans 100.0 1.6E-29 5.6E-34 234.1 16.6 237 47-379 103-388 (393)
115 3jrp_A Fusion protein of prote 100.0 4.2E-28 1.4E-32 222.9 23.7 253 35-323 10-290 (379)
116 2aq5_A Coronin-1A; WD40 repeat 100.0 7.3E-29 2.5E-33 230.5 18.0 227 84-407 35-277 (402)
117 1yfq_A Cell cycle arrest prote 100.0 1.2E-28 4.2E-33 223.5 17.2 233 81-407 9-261 (342)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-27 4.7E-32 225.3 22.6 224 81-342 100-365 (450)
119 3vu4_A KMHSV2; beta-propeller 100.0 5.8E-27 2E-31 213.9 23.0 264 35-323 18-339 (355)
120 3jro_A Fusion protein of prote 100.0 4.3E-27 1.5E-31 235.4 22.8 255 34-324 7-289 (753)
121 1l0q_A Surface layer protein; 99.9 3.8E-26 1.3E-30 211.2 25.1 265 48-334 5-289 (391)
122 3bws_A Protein LP49; two-domai 99.9 3.1E-27 1.1E-31 221.6 17.1 279 75-407 114-410 (433)
123 3bws_A Protein LP49; two-domai 99.9 8.8E-26 3E-30 211.6 19.9 277 40-379 126-431 (433)
124 2j04_A TAU60, YPL007P, hypothe 99.9 2E-25 6.8E-30 208.6 17.1 190 175-407 65-277 (588)
125 1l0q_A Surface layer protein; 99.9 1.7E-25 5.9E-30 206.8 15.9 248 96-407 2-253 (391)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-23 3.9E-28 196.1 25.1 223 76-407 171-407 (415)
127 2w18_A PALB2, fancn, partner a 99.9 1.4E-24 4.9E-29 190.8 17.0 262 13-318 62-355 (356)
128 1nir_A Nitrite reductase; hemo 99.9 8.1E-23 2.8E-27 196.2 19.4 300 48-407 152-488 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.2E-23 3.1E-27 189.9 18.2 270 82-407 61-363 (415)
130 2ojh_A Uncharacterized protein 99.9 1.3E-20 4.4E-25 166.5 25.5 246 50-342 17-282 (297)
131 2oit_A Nucleoporin 214KDA; NH2 99.9 1.3E-21 4.5E-26 182.8 16.3 127 192-327 90-229 (434)
132 2oit_A Nucleoporin 214KDA; NH2 99.9 1.6E-20 5.6E-25 175.4 18.6 177 78-322 87-280 (434)
133 1ri6_A Putative isomerase YBHE 99.9 7.7E-20 2.6E-24 165.3 22.0 273 50-379 10-307 (343)
134 3vgz_A Uncharacterized protein 99.8 2.8E-20 9.5E-25 169.1 18.4 264 81-407 38-323 (353)
135 1nir_A Nitrite reductase; hemo 99.8 1E-20 3.5E-25 181.6 15.8 262 91-407 145-430 (543)
136 3u4y_A Uncharacterized protein 99.8 5.2E-19 1.8E-23 159.4 25.4 270 48-380 13-304 (331)
137 1xfd_A DIP, dipeptidyl aminope 99.8 3.1E-20 1E-24 185.4 19.0 303 38-407 18-419 (723)
138 2ecf_A Dipeptidyl peptidase IV 99.8 8E-21 2.7E-25 190.2 14.0 286 83-407 36-434 (741)
139 2ojh_A Uncharacterized protein 99.8 1.5E-20 5.2E-25 166.0 11.3 203 172-407 60-281 (297)
140 1k32_A Tricorn protease; prote 99.8 9.9E-20 3.4E-24 188.7 19.0 195 172-407 263-481 (1045)
141 2ecf_A Dipeptidyl peptidase IV 99.8 6.4E-19 2.2E-23 176.4 21.0 260 85-379 110-458 (741)
142 3u4y_A Uncharacterized protein 99.8 5.5E-19 1.9E-23 159.2 17.5 234 90-379 4-251 (331)
143 3hfq_A Uncharacterized protein 99.8 1.4E-18 4.7E-23 157.8 19.8 255 74-379 30-316 (347)
144 3scy_A Hypothetical bacterial 99.8 9.2E-19 3.2E-23 159.9 18.4 276 75-406 42-360 (361)
145 1pby_B Quinohemoprotein amine 99.8 3.6E-19 1.2E-23 160.5 12.8 265 48-379 4-309 (337)
146 3vgz_A Uncharacterized protein 99.8 6.3E-18 2.2E-22 153.5 21.1 238 76-342 81-324 (353)
147 3o4h_A Acylamino-acid-releasin 99.8 5.5E-19 1.9E-23 171.9 13.3 255 82-379 20-314 (582)
148 2z3z_A Dipeptidyl aminopeptida 99.8 3.9E-18 1.3E-22 169.8 18.2 263 84-379 82-434 (706)
149 1k32_A Tricorn protease; prote 99.8 1.3E-17 4.5E-22 172.9 21.7 262 78-378 198-500 (1045)
150 1jmx_B Amine dehydrogenase; ox 99.8 5.3E-19 1.8E-23 160.3 9.3 232 89-379 5-324 (349)
151 1xfd_A DIP, dipeptidyl aminope 99.8 9.7E-19 3.3E-23 174.6 11.6 221 84-342 17-316 (723)
152 2z3z_A Dipeptidyl aminopeptida 99.8 7.8E-19 2.7E-23 174.8 9.3 278 86-407 28-410 (706)
153 1ri6_A Putative isomerase YBHE 99.7 1.8E-16 6.2E-21 143.1 20.7 245 38-319 39-307 (343)
154 1jof_A Carboxy-CIS,CIS-muconat 99.7 6.7E-16 2.3E-20 141.1 24.0 257 82-379 38-340 (365)
155 1z68_A Fibroblast activation p 99.7 3.3E-18 1.1E-22 170.6 8.5 300 40-407 19-419 (719)
156 1z68_A Fibroblast activation p 99.7 4.1E-17 1.4E-21 162.7 8.8 215 88-342 20-322 (719)
157 1pby_B Quinohemoprotein amine 99.7 1.8E-15 6.1E-20 136.1 18.0 241 39-331 36-321 (337)
158 3fvz_A Peptidyl-glycine alpha- 99.7 5.1E-15 1.7E-19 133.2 18.6 263 83-379 23-321 (329)
159 3hfq_A Uncharacterized protein 99.7 2.3E-14 7.8E-19 129.8 22.7 218 80-319 82-316 (347)
160 4a5s_A Dipeptidyl peptidase 4 99.6 2.6E-15 9E-20 150.0 16.7 147 83-308 16-189 (740)
161 1jmx_B Amine dehydrogenase; ox 99.6 2.1E-14 7.3E-19 129.8 21.1 236 48-330 14-335 (349)
162 3pe7_A Oligogalacturonate lyas 99.6 5.5E-15 1.9E-19 136.0 16.2 264 81-407 28-360 (388)
163 1q7f_A NHL, brain tumor CG1071 99.6 3.4E-14 1.2E-18 125.0 20.5 244 81-379 27-279 (286)
164 3azo_A Aminopeptidase; POP fam 99.6 9.4E-15 3.2E-19 144.3 17.7 276 80-403 20-341 (662)
165 3o4h_A Acylamino-acid-releasin 99.6 2E-15 7E-20 146.7 12.6 229 97-378 24-274 (582)
166 3scy_A Hypothetical bacterial 99.6 4.8E-13 1.6E-17 121.8 24.3 216 82-319 98-336 (361)
167 3pe7_A Oligogalacturonate lyas 99.6 1.2E-13 4.2E-18 126.9 19.1 256 81-379 78-381 (388)
168 4a5s_A Dipeptidyl peptidase 4 99.5 4.3E-13 1.5E-17 134.1 19.8 162 192-379 109-352 (740)
169 2oiz_A Aromatic amine dehydrog 99.5 2E-13 6.9E-18 124.3 14.5 263 88-407 54-357 (361)
170 1rwi_B Serine/threonine-protei 99.5 3.4E-12 1.1E-16 111.1 19.7 238 85-379 25-263 (270)
171 2dg1_A DRP35, lactonase; beta 99.5 2.6E-12 8.9E-17 115.5 19.2 162 79-320 40-213 (333)
172 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.7E-13 9.1E-18 123.8 12.7 177 175-379 61-290 (365)
173 3e5z_A Putative gluconolactona 99.5 1.8E-12 6.3E-17 114.5 16.9 214 81-406 25-264 (296)
174 3fvz_A Peptidyl-glycine alpha- 99.5 8E-13 2.7E-17 118.8 14.0 209 172-407 67-301 (329)
175 1q7f_A NHL, brain tumor CG1071 99.4 3.1E-11 1.1E-15 106.0 23.6 199 82-321 75-281 (286)
176 2bkl_A Prolyl endopeptidase; m 99.4 4.6E-12 1.6E-16 125.7 20.0 249 81-379 118-396 (695)
177 2xdw_A Prolyl endopeptidase; a 99.4 1.7E-12 5.7E-17 129.2 16.1 183 197-407 173-389 (710)
178 3c5m_A Oligogalacturonate lyas 99.4 1E-11 3.6E-16 114.1 19.6 248 88-378 85-380 (396)
179 3c5m_A Oligogalacturonate lyas 99.4 1.9E-13 6.5E-18 125.8 7.2 202 84-323 36-276 (396)
180 2oiz_A Aromatic amine dehydrog 99.4 6.4E-12 2.2E-16 114.3 15.8 128 203-342 208-358 (361)
181 2gop_A Trilobed protease; beta 99.4 1E-11 3.5E-16 112.2 17.1 163 197-407 106-311 (347)
182 3azo_A Aminopeptidase; POP fam 99.4 4.9E-12 1.7E-16 124.8 15.6 128 194-332 187-336 (662)
183 3e5z_A Putative gluconolactona 99.4 4.1E-11 1.4E-15 105.8 19.9 181 81-342 66-267 (296)
184 1qks_A Cytochrome CD1 nitrite 99.4 1.3E-10 4.6E-15 111.3 22.7 274 49-381 171-478 (567)
185 3dsm_A Uncharacterized protein 99.3 7.1E-11 2.4E-15 105.9 18.6 219 76-331 76-312 (328)
186 1xip_A Nucleoporin NUP159; bet 99.3 1.9E-11 6.6E-16 110.7 13.3 128 192-342 86-224 (388)
187 3dsm_A Uncharacterized protein 99.3 1.3E-10 4.4E-15 104.2 17.9 235 84-379 44-301 (328)
188 2xdw_A Prolyl endopeptidase; a 99.3 2.6E-10 9E-15 113.3 20.5 158 193-379 231-413 (710)
189 1xip_A Nucleoporin NUP159; bet 99.3 6.6E-12 2.3E-16 113.7 7.8 165 196-407 39-223 (388)
190 2z2n_A Virginiamycin B lyase; 99.2 2.5E-09 8.7E-14 94.0 23.6 223 81-319 12-254 (299)
191 1rwi_B Serine/threonine-protei 99.2 3.6E-10 1.2E-14 98.0 17.3 203 82-323 65-267 (270)
192 3g4e_A Regucalcin; six bladed 99.2 1.6E-10 5.3E-15 102.2 15.2 220 83-406 12-249 (297)
193 2dg1_A DRP35, lactonase; beta 99.2 6.4E-10 2.2E-14 99.8 17.5 178 169-379 22-212 (333)
194 3no2_A Uncharacterized protein 99.2 5.3E-10 1.8E-14 97.4 16.1 193 95-329 4-204 (276)
195 3no2_A Uncharacterized protein 99.2 1E-10 3.4E-15 102.1 10.9 150 165-330 6-164 (276)
196 1yr2_A Prolyl oligopeptidase; 99.2 4.9E-10 1.7E-14 111.9 16.4 254 82-379 161-440 (741)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 5.1E-09 1.7E-13 92.9 21.3 231 81-321 15-300 (314)
198 2qc5_A Streptogramin B lactona 99.1 2.2E-08 7.4E-13 88.0 24.1 223 82-319 18-259 (300)
199 2bkl_A Prolyl endopeptidase; m 99.1 1.6E-10 5.4E-15 114.6 10.7 199 170-406 143-371 (695)
200 1qks_A Cytochrome CD1 nitrite 99.1 2.6E-09 8.7E-14 102.4 17.5 200 95-329 166-382 (567)
201 2gop_A Trilobed protease; beta 99.1 9.7E-11 3.3E-15 105.7 6.7 100 195-310 59-190 (347)
202 3hrp_A Uncharacterized protein 99.1 6.3E-09 2.2E-13 96.1 18.4 203 84-328 131-361 (409)
203 3iuj_A Prolyl endopeptidase; h 99.0 8.7E-09 3E-13 102.0 18.8 253 82-379 127-404 (693)
204 3g4e_A Regucalcin; six bladed 99.0 5.3E-08 1.8E-12 85.8 21.5 112 192-310 146-263 (297)
205 2ghs_A AGR_C_1268P; regucalcin 99.0 4.9E-08 1.7E-12 87.2 20.0 217 86-342 51-282 (326)
206 2mad_H Methylamine dehydrogena 99.0 3.5E-07 1.2E-11 83.1 24.7 226 88-327 70-357 (373)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 3.9E-09 1.3E-13 93.7 10.6 200 170-407 42-277 (314)
208 2z2n_A Virginiamycin B lyase; 98.9 3E-07 1E-11 80.5 22.6 222 82-321 55-296 (299)
209 3sjl_D Methylamine dehydrogena 98.9 1.6E-08 5.6E-13 91.2 13.9 232 88-332 82-375 (386)
210 2mad_H Methylamine dehydrogena 98.9 1.3E-07 4.4E-12 86.1 20.0 187 172-392 95-356 (373)
211 3dr2_A Exported gluconolactona 98.9 8.6E-08 2.9E-12 84.8 17.1 160 79-321 40-225 (305)
212 2iwa_A Glutamine cyclotransfer 98.8 2.2E-07 7.5E-12 79.4 16.8 207 74-321 9-238 (266)
213 2ghs_A AGR_C_1268P; regucalcin 98.8 1.9E-06 6.5E-11 76.8 23.4 112 192-311 176-294 (326)
214 1yr2_A Prolyl oligopeptidase; 98.8 1.5E-08 5E-13 101.3 9.6 121 193-321 161-304 (741)
215 2hz6_A Endoplasmic reticulum t 98.8 2.9E-10 1E-14 103.6 -2.7 179 166-379 11-191 (369)
216 3hrp_A Uncharacterized protein 98.8 3.3E-08 1.1E-12 91.2 10.7 142 166-320 144-298 (409)
217 1mda_H Methylamine dehydrogena 98.8 2.8E-07 9.6E-12 83.1 16.4 227 88-333 69-359 (368)
218 2qc5_A Streptogramin B lactona 98.8 2.2E-06 7.4E-11 75.0 21.8 220 82-319 60-299 (300)
219 2qe8_A Uncharacterized protein 98.7 8E-07 2.7E-11 79.9 19.0 117 193-318 65-224 (343)
220 3c75_H MADH, methylamine dehyd 98.7 2.2E-07 7.4E-12 85.3 14.4 228 88-327 122-409 (426)
221 3dr2_A Exported gluconolactona 98.7 6E-07 2.1E-11 79.3 16.6 130 196-342 132-287 (305)
222 1kb0_A Quinohemoprotein alcoho 98.7 8E-08 2.8E-12 94.5 11.5 187 173-394 189-515 (677)
223 1yiq_A Quinohemoprotein alcoho 98.7 1.8E-07 6.3E-12 92.1 13.8 174 98-282 72-343 (689)
224 2hz6_A Endoplasmic reticulum t 98.7 3.2E-08 1.1E-12 90.1 7.5 208 95-322 8-238 (369)
225 2qe8_A Uncharacterized protein 98.7 2.1E-07 7E-12 83.8 12.2 123 195-321 120-279 (343)
226 3q7m_A Lipoprotein YFGL, BAMB; 98.6 2.8E-06 9.5E-11 77.3 19.5 245 97-377 104-375 (376)
227 2ece_A 462AA long hypothetical 98.6 1.7E-06 5.9E-11 78.8 17.2 142 171-320 161-352 (462)
228 3nol_A Glutamine cyclotransfer 98.6 1.6E-06 5.6E-11 73.1 15.7 193 74-308 31-244 (262)
229 1npe_A Nidogen, entactin; glyc 98.6 7.5E-06 2.6E-10 70.6 20.6 116 196-321 80-199 (267)
230 3hxj_A Pyrrolo-quinoline quino 98.5 7E-07 2.4E-11 79.5 12.3 143 165-327 108-250 (330)
231 3iuj_A Prolyl endopeptidase; h 98.5 2.8E-07 9.7E-12 91.2 9.7 178 172-379 153-358 (693)
232 3nok_A Glutaminyl cyclase; bet 98.5 7.2E-06 2.5E-10 69.2 16.4 191 75-308 44-254 (268)
233 3sjl_D Methylamine dehydrogena 98.5 2E-06 6.9E-11 77.6 13.6 132 173-320 58-208 (386)
234 1fwx_A Nitrous oxide reductase 98.5 1.6E-06 5.6E-11 81.7 13.3 181 170-379 108-360 (595)
235 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.4E-05 4.8E-10 72.6 19.1 248 97-379 54-336 (376)
236 3mbr_X Glutamine cyclotransfer 98.4 2.7E-05 9.2E-10 65.2 18.4 194 74-309 9-224 (243)
237 1mda_H Methylamine dehydrogena 98.4 2E-07 6.7E-12 84.1 5.8 192 175-397 47-357 (368)
238 3c75_H MADH, methylamine dehyd 98.4 2.5E-06 8.6E-11 78.3 12.3 136 174-324 99-252 (426)
239 3v65_B Low-density lipoprotein 98.3 0.00056 1.9E-08 62.3 26.6 207 81-328 113-326 (386)
240 3hxj_A Pyrrolo-quinoline quino 98.3 5.3E-06 1.8E-10 73.8 12.9 175 166-379 149-323 (330)
241 1kb0_A Quinohemoprotein alcoho 98.3 2.4E-05 8.1E-10 76.9 17.9 145 175-330 284-517 (677)
242 2ece_A 462AA long hypothetical 98.3 1.2E-05 4E-10 73.4 13.8 143 167-320 99-289 (462)
243 3v64_C Agrin; beta propeller, 98.3 0.0013 4.3E-08 59.0 26.5 207 81-328 70-283 (349)
244 1npe_A Nidogen, entactin; glyc 98.2 0.00034 1.2E-08 60.1 21.5 135 196-342 123-261 (267)
245 1fwx_A Nitrous oxide reductase 98.2 1E-05 3.6E-10 76.3 12.5 165 171-342 172-398 (595)
246 1kv9_A Type II quinohemoprotei 98.2 1.4E-05 4.7E-10 78.5 13.0 101 173-283 177-339 (668)
247 1ijq_A LDL receptor, low-densi 98.1 0.0031 1.1E-07 55.6 26.3 213 80-327 26-245 (316)
248 2p4o_A Hypothetical protein; p 98.1 0.00047 1.6E-08 60.6 20.4 114 196-320 73-198 (306)
249 2fp8_A Strictosidine synthase; 98.1 0.00047 1.6E-08 61.0 19.8 121 196-328 127-276 (322)
250 1yiq_A Quinohemoprotein alcoho 98.1 4.2E-05 1.4E-09 75.3 13.6 83 216-308 454-537 (689)
251 2iwa_A Glutamine cyclotransfer 98.0 2.6E-05 9E-10 66.5 9.8 176 173-380 43-237 (266)
252 3nok_A Glutaminyl cyclase; bet 98.0 5.9E-05 2E-09 63.7 11.8 145 167-328 68-218 (268)
253 3nol_A Glutamine cyclotransfer 98.0 3.6E-05 1.2E-09 65.0 10.0 140 174-329 65-210 (262)
254 3v64_C Agrin; beta propeller, 98.0 0.0009 3.1E-08 60.0 19.7 138 174-320 53-191 (349)
255 3p5b_L Low density lipoprotein 97.9 0.0056 1.9E-07 55.9 24.7 207 80-327 108-327 (400)
256 2ad6_A Methanol dehydrogenase 97.9 0.00056 1.9E-08 65.7 17.8 58 218-285 273-343 (571)
257 3sov_A LRP-6, low-density lipo 97.9 0.0054 1.9E-07 54.0 22.5 203 84-327 35-245 (318)
258 3v65_B Low-density lipoprotein 97.9 0.00059 2E-08 62.2 16.7 140 173-321 95-235 (386)
259 1n7d_A LDL receptor, low-densi 97.8 0.0003 1E-08 69.3 14.8 211 83-329 405-623 (699)
260 1ijq_A LDL receptor, low-densi 97.8 0.0011 3.9E-08 58.4 17.2 138 174-320 10-152 (316)
261 3qqz_A Putative uncharacterize 97.8 0.0033 1.1E-07 53.2 18.6 114 194-318 120-251 (255)
262 3mbr_X Glutamine cyclotransfer 97.8 0.00033 1.1E-08 58.5 12.2 139 174-328 43-187 (243)
263 3m0c_C LDL receptor, low-densi 97.8 0.013 4.4E-07 58.3 25.2 215 79-327 419-639 (791)
264 2p9w_A MAL S 1 allergenic prot 97.7 0.0032 1.1E-07 55.0 17.8 114 197-320 65-215 (334)
265 4a2l_A BT_4663, two-component 97.7 0.023 7.9E-07 56.9 26.9 138 168-321 324-481 (795)
266 2xe4_A Oligopeptidase B; hydro 97.7 0.0016 5.6E-08 64.8 18.1 116 198-320 224-354 (751)
267 1flg_A Protein (quinoprotein e 97.7 0.0022 7.6E-08 61.6 17.9 59 217-285 291-363 (582)
268 1w6s_A Methanol dehydrogenase 97.6 0.0019 6.6E-08 62.1 16.1 75 200-285 246-350 (599)
269 3tc9_A Hypothetical hydrolase; 97.5 0.0069 2.4E-07 55.9 18.3 118 194-320 178-301 (430)
270 3p5b_L Low density lipoprotein 97.5 0.0056 1.9E-07 55.9 17.4 145 170-321 88-235 (400)
271 2ad6_A Methanol dehydrogenase 97.5 0.0056 1.9E-07 58.7 18.0 61 261-329 443-503 (571)
272 1kv9_A Type II quinohemoprotei 97.5 0.0026 9E-08 62.3 15.7 144 176-330 272-498 (668)
273 1n7d_A LDL receptor, low-densi 97.4 0.0003 1E-08 69.3 7.6 115 197-320 455-571 (699)
274 2p4o_A Hypothetical protein; p 97.3 0.024 8.3E-07 49.5 18.2 102 197-309 171-278 (306)
275 3sov_A LRP-6, low-density lipo 97.3 0.0055 1.9E-07 54.0 13.8 118 195-320 35-154 (318)
276 1k3i_A Galactose oxidase precu 97.3 0.011 3.7E-07 57.9 17.2 104 198-309 402-530 (656)
277 2fp8_A Strictosidine synthase; 97.2 0.024 8.1E-07 49.9 18.0 114 196-320 186-313 (322)
278 2xe4_A Oligopeptidase B; hydro 97.2 0.0028 9.7E-08 63.1 13.0 116 196-321 175-305 (751)
279 3m0c_C LDL receptor, low-densi 97.2 0.014 4.9E-07 58.0 17.0 140 174-321 404-547 (791)
280 3tc9_A Hypothetical hydrolase; 97.1 0.0034 1.2E-07 58.0 11.6 136 196-342 138-280 (430)
281 3amr_A 3-phytase; beta-propell 97.1 0.034 1.2E-06 49.0 16.7 131 195-328 128-272 (355)
282 4a0p_A LRP6, LRP-6, low-densit 97.1 0.17 5.9E-06 49.0 23.2 200 83-325 36-242 (628)
283 4a2l_A BT_4663, two-component 97.0 0.33 1.1E-05 48.5 27.1 139 167-322 370-528 (795)
284 4hw6_A Hypothetical protein, I 97.0 0.054 1.9E-06 49.9 18.2 116 195-319 182-303 (433)
285 3s94_A LRP-6, low-density lipo 97.0 0.11 3.9E-06 50.1 20.9 117 196-321 85-203 (619)
286 2p9w_A MAL S 1 allergenic prot 96.9 0.024 8.1E-07 49.6 13.8 156 196-379 14-214 (334)
287 3qqz_A Putative uncharacterize 96.8 0.052 1.8E-06 45.8 14.7 120 191-317 23-150 (255)
288 3kya_A Putative phosphatase; s 96.7 0.092 3.1E-06 48.9 17.2 122 196-319 187-340 (496)
289 4hw6_A Hypothetical protein, I 96.6 0.02 7E-07 52.7 11.8 117 196-323 140-262 (433)
290 3kya_A Putative phosphatase; s 96.5 0.017 5.9E-07 53.8 10.9 117 196-319 140-277 (496)
291 3v9f_A Two-component system se 96.5 0.82 2.8E-05 45.5 25.0 137 169-321 378-525 (781)
292 3ei3_A DNA damage-binding prot 96.5 0.34 1.2E-05 50.4 21.1 43 76-118 546-594 (1158)
293 3amr_A 3-phytase; beta-propell 96.4 0.058 2E-06 47.5 12.7 147 167-319 43-209 (355)
294 3s94_A LRP-6, low-density lipo 96.3 0.81 2.8E-05 44.2 22.7 117 196-321 393-511 (619)
295 1k3i_A Galactose oxidase precu 96.3 0.094 3.2E-06 51.2 15.7 116 199-322 190-325 (656)
296 1flg_A Protein (quinoprotein e 96.3 0.068 2.3E-06 51.3 14.0 82 216-307 465-547 (582)
297 1w6s_A Methanol dehydrogenase 96.0 0.29 9.8E-06 47.1 16.5 147 167-326 124-348 (599)
298 4a0p_A LRP6, LRP-6, low-densit 95.7 1.6 5.6E-05 42.1 22.9 117 195-320 389-508 (628)
299 3v9f_A Two-component system se 95.5 2.2 7.5E-05 42.4 25.8 139 169-322 422-570 (781)
300 3pbp_A Nucleoporin NUP82; beta 95.5 0.49 1.7E-05 42.8 14.9 114 196-316 67-208 (452)
301 2xbg_A YCF48-like protein; pho 95.3 1.4 4.7E-05 38.6 20.2 118 193-322 161-280 (327)
302 3sre_A PON1, serum paraoxonase 95.2 1.3 4.4E-05 39.3 16.8 113 195-319 165-297 (355)
303 3pbp_A Nucleoporin NUP82; beta 95.2 1 3.6E-05 40.7 16.0 101 216-320 40-158 (452)
304 1xi4_A Clathrin heavy chain; a 95.0 2.1 7.1E-05 45.1 19.4 198 172-394 84-297 (1630)
305 2ism_A Putative oxidoreductase 94.5 1.1 3.7E-05 39.8 14.7 108 194-308 30-153 (352)
306 2vpj_A Kelch-like protein 12; 94.3 2.3 7.8E-05 36.4 16.0 104 208-321 161-279 (301)
307 2xzh_A Clathrin heavy chain 1; 94.1 2.7 9.4E-05 36.6 21.0 142 174-324 180-336 (365)
308 1tl2_A L10, protein (tachylect 94.0 0.17 5.7E-06 41.3 7.3 104 196-314 42-157 (236)
309 2xzh_A Clathrin heavy chain 1; 93.7 3.3 0.00011 36.1 21.2 234 92-379 75-331 (365)
310 3sre_A PON1, serum paraoxonase 93.0 1.5 5.1E-05 38.9 12.4 115 196-320 113-252 (355)
311 2xn4_A Kelch-like protein 2; s 92.9 2.2 7.5E-05 36.6 13.4 104 208-321 157-277 (302)
312 1bpo_A Protein (clathrin); cla 92.1 6.8 0.00023 35.6 22.3 142 174-324 179-335 (494)
313 3ii7_A Kelch-like protein 7; p 92.0 4.2 0.00014 34.8 14.1 104 208-321 151-273 (306)
314 3das_A Putative oxidoreductase 92.0 3.7 0.00013 36.2 13.5 119 188-308 25-158 (347)
315 1cru_A Protein (soluble quinop 91.9 4.4 0.00015 37.3 14.7 112 194-308 26-162 (454)
316 1zgk_A Kelch-like ECH-associat 91.7 4.9 0.00017 34.5 14.2 104 208-321 170-288 (308)
317 2vpj_A Kelch-like protein 12; 91.6 1.9 6.5E-05 36.9 11.4 105 208-322 114-233 (301)
318 2xn4_A Kelch-like protein 2; s 90.0 1.4 4.9E-05 37.8 9.0 104 208-321 110-230 (302)
319 1xi4_A Clathrin heavy chain; a 89.5 17 0.00057 38.6 17.1 206 92-333 74-302 (1630)
320 1cru_A Protein (soluble quinop 89.3 13 0.00045 34.1 19.4 31 83-114 26-56 (454)
321 1bpo_A Protein (clathrin); cla 89.1 13 0.00044 33.9 25.2 129 195-328 151-297 (494)
322 3a9g_A Putative uncharacterize 88.9 4.3 0.00015 35.9 11.4 110 194-308 28-153 (354)
323 3sbq_A Nitrous-oxide reductase 88.9 2.6 8.8E-05 39.6 9.9 129 175-304 299-450 (638)
324 2g8s_A Glucose/sorbosone dehyd 88.3 8.8 0.0003 33.8 13.1 112 194-308 17-148 (353)
325 3a9g_A Putative uncharacterize 87.8 14 0.00047 32.6 17.5 28 83-112 28-55 (354)
326 1zgk_A Kelch-like ECH-associat 87.6 3.8 0.00013 35.2 10.1 104 208-321 123-241 (308)
327 3ei3_A DNA damage-binding prot 86.9 11 0.00036 39.4 14.3 133 175-319 493-635 (1158)
328 4asc_A Kelch repeat and BTB do 86.5 9.5 0.00032 32.7 12.1 104 208-321 100-222 (315)
329 2ism_A Putative oxidoreductase 84.9 8.9 0.0003 33.8 11.2 73 240-320 31-114 (352)
330 3das_A Putative oxidoreductase 84.5 21 0.0007 31.4 19.9 33 82-115 30-62 (347)
331 4asc_A Kelch repeat and BTB do 82.4 4.3 0.00015 35.0 7.9 104 208-321 150-278 (315)
332 2xbg_A YCF48-like protein; pho 80.3 28 0.00096 30.0 24.8 107 195-317 122-231 (327)
333 2g8s_A Glucose/sorbosone dehyd 79.6 31 0.0011 30.2 16.7 28 84-113 18-46 (353)
334 3sbq_A Nitrous-oxide reductase 79.4 14 0.00047 34.9 10.1 78 241-321 324-409 (638)
335 3ii7_A Kelch-like protein 7; p 79.1 16 0.00055 31.0 10.5 104 208-321 13-128 (306)
336 1tl2_A L10, protein (tachylect 78.2 12 0.0004 30.6 8.3 99 208-320 5-116 (236)
337 2be1_A Serine/threonine-protei 77.9 10 0.00035 33.2 8.7 112 208-329 11-139 (339)
338 2zwa_A Leucine carboxyl methyl 72.4 14 0.00049 36.0 9.1 111 205-322 451-579 (695)
339 2wg3_C Hedgehog-interacting pr 70.1 67 0.0023 29.5 15.5 114 195-309 14-158 (463)
340 2uvk_A YJHT; unknown function, 69.1 21 0.00071 31.2 8.8 51 217-269 168-224 (357)
341 3ott_A Two-component system se 68.3 75 0.0026 31.1 13.5 110 195-321 146-261 (758)
342 2woz_A Kelch repeat and BTB do 67.4 21 0.00073 30.5 8.4 105 208-322 111-233 (318)
343 4gq2_M Nucleoporin NUP120; bet 65.1 21 0.00072 36.3 8.8 37 290-327 237-273 (950)
344 2woz_A Kelch repeat and BTB do 65.1 64 0.0022 27.4 13.1 105 208-322 58-186 (318)
345 3b7f_A Glycosyl hydrolase, BNR 64.3 76 0.0026 28.0 11.9 27 241-267 116-143 (394)
346 3b7f_A Glycosyl hydrolase, BNR 61.2 87 0.003 27.6 19.0 28 240-267 177-204 (394)
347 3s25_A Hypothetical 7-bladed b 60.2 33 0.0011 29.4 8.0 87 217-322 88-178 (302)
348 4gq2_M Nucleoporin NUP120; bet 58.2 18 0.00062 36.8 6.8 37 85-122 237-273 (950)
349 3qhy_B Beta-lactamase inhibito 57.6 85 0.0029 26.4 12.0 109 196-324 64-172 (282)
350 2be1_A Serine/threonine-protei 56.4 17 0.00057 31.9 5.5 67 252-324 10-80 (339)
351 2zwa_A Leucine carboxyl methyl 55.6 63 0.0021 31.5 10.0 115 205-322 500-637 (695)
352 2uvk_A YJHT; unknown function, 55.4 27 0.00094 30.4 6.9 57 263-326 286-348 (357)
353 3qhy_B Beta-lactamase inhibito 54.5 96 0.0033 26.0 13.9 110 195-324 102-211 (282)
354 3ott_A Two-component system se 52.9 1.7E+02 0.0059 28.5 16.0 111 196-322 473-588 (758)
355 3s25_A Hypothetical 7-bladed b 50.4 1.2E+02 0.004 25.8 10.1 103 201-321 110-217 (302)
356 3q6k_A 43.2 kDa salivary prote 49.9 1.4E+02 0.0047 26.5 13.4 141 175-320 124-306 (381)
357 1sqj_A OXG-RCBH, oligoxylogluc 43.4 2.5E+02 0.0086 27.7 16.3 29 83-111 14-42 (789)
358 3zwu_A Alkaline phosphatase PH 40.8 89 0.003 29.7 8.1 58 242-306 478-548 (592)
359 4fhn_B Nucleoporin NUP120; pro 38.6 14 0.00047 38.6 2.4 37 290-327 239-275 (1139)
360 3f7f_A Nucleoporin NUP120; nuc 37.5 30 0.001 33.6 4.3 38 289-329 222-259 (729)
361 4a9v_A PHOX; hydrolase, beta-p 36.1 1.5E+02 0.0052 28.0 8.6 64 241-311 477-553 (592)
362 4fhn_B Nucleoporin NUP120; pro 35.6 75 0.0026 33.1 7.3 36 242-284 240-275 (1139)
363 3zwu_A Alkaline phosphatase PH 34.1 1.4E+02 0.0048 28.4 8.3 58 197-258 478-548 (592)
364 1sqj_A OXG-RCBH, oligoxylogluc 32.6 2.3E+02 0.0078 28.0 10.0 63 194-259 14-83 (789)
365 4a9v_A PHOX; hydrolase, beta-p 30.1 2.6E+02 0.0088 26.5 9.1 59 196-258 477-548 (592)
366 3f7f_A Nucleoporin NUP120; nuc 29.1 74 0.0025 31.0 5.5 36 241-285 223-258 (729)
367 2wg3_C Hedgehog-interacting pr 25.0 3E+02 0.01 25.1 8.7 65 240-308 14-91 (463)
368 1ukf_A Avirulence protein AVRP 21.5 79 0.0027 24.6 3.3 36 287-322 117-152 (188)
No 1
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1e-45 Score=347.25 Aligned_cols=329 Identities=29% Similarity=0.510 Sum_probs=255.0
Q ss_pred cccCcchhhhhhhhccCceEEEeeeecccCCCeeEEEEeecccccCc--cceEEEEeecc--------------c-----
Q 046899 7 GMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATY--KNRQRLYLSEQ--------------F----- 65 (407)
Q Consensus 7 ~~~~~~~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~~~~~~~--~~~~~i~~~~~--------------~----- 65 (407)
.+++.++++|++||+|+|++|++++.+.++||+++++|+|+...... ....++++++. +
T Consensus 16 ~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~ 95 (430)
T 2xyi_A 16 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDA 95 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC----
T ss_pred hhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcc
Confidence 45678899999999999999999999999999999999997532111 11466677661 0
Q ss_pred -------Ccc--------cCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC----------Ccc
Q 046899 66 -------NEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP----------NRH 120 (407)
Q Consensus 66 -------~~~--------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~----------~~~ 120 (407)
+++ ...+.+......+|.+.|++++|+|+++++||+|+.||.|++||+.+.. ...
T Consensus 96 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~ 175 (430)
T 2xyi_A 96 QFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL 175 (430)
T ss_dssp ----------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE
T ss_pred ccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE
Confidence 000 1233455677789999999999999658899999999999999998632 222
Q ss_pred cccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC-ccccccCCCCCCCCCCCCcCc-------eeeEee
Q 046899 121 AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS-KNASKSGGNGDKPLESPSIGA-------RGKYLG 192 (407)
Q Consensus 121 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~-------~~~~~~ 192 (407)
.+.+|.. .+..+....... .+++++.+|.+++|++..... ...+.+
T Consensus 176 ~~~~h~~--------------------------~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (430)
T 2xyi_A 176 RLRGHQK--------------------------EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229 (430)
T ss_dssp EEECCSS--------------------------CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC
T ss_pred EecCCCC--------------------------CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC
Confidence 2222221 122222222223 578889999999999987432 455668
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS-TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
|...|.+++|+|.+..+|++++.||.|++||+++.. ......+..|...|++++|+|.+..++++|+.||.|++||++.
T Consensus 230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 999999999999665899999999999999999873 1145566789999999999994445899999999999999997
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC--------------CcccccccCCCcccCC
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI--------------GEKQDYGELKYPIIHP 337 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~--------------~~~~~~~~~~~~v~~~ 337 (407)
. ..++..+..|...|++++|+|+++++|++++.|+.|++||+... +.+..+.+|..+|+++
T Consensus 310 ~-----~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 384 (430)
T 2xyi_A 310 L-----KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 384 (430)
T ss_dssp T-----TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE
T ss_pred C-----CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE
Confidence 4 36788999999999999999999888899999999999999873 4445566788888899
Q ss_pred CCcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeeccccccC
Q 046899 338 AYSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRMIDLIYR 384 (407)
Q Consensus 338 ~~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~~~~~~ 384 (407)
+|+|+ +. .|++++.|+.|+||++....+.
T Consensus 385 ~~~p~------------------~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 385 SWNPN------------------EPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EECSS------------------STTEEEEEETTSEEEEEEECHHHHC
T ss_pred EECCC------------------CCCEEEEEECCCCEEEeEccccccc
Confidence 88887 66 7899999999999999854443
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-42 Score=320.23 Aligned_cols=274 Identities=19% Similarity=0.314 Sum_probs=242.7
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEec
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSI 141 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~ 141 (407)
...+.+|.++|++++|+| ++.+|++|+.||+|+|||+.+++....+.+|...+.++ |++|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 345568999999999999 88899999999999999999998888888877654322 899999999
Q ss_pred ccccc--ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcE
Q 046899 142 QDHVS--ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCL 219 (407)
Q Consensus 142 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i 219 (407)
.+... .+..+...+..+........+++++.|+.+++||+.++.++..+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v 258 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTV 258 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeE
Confidence 87643 344555555555555556678999999999999999999999999999999999999999 899999999999
Q ss_pred EEEEcCCCCCCceeeecccCcceEEEEecCCC-------------------CCEEEEEeCCCcEEEEeCCCCCCCCCCCc
Q 046899 220 ILWDARSGSTPAVKVEKAHNADIHCVDWNPHD-------------------VNLILTGSADNSIHMFDRRKLTSDGVGSP 280 (407)
Q Consensus 220 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~-------------------~~~l~tg~~dg~i~vwd~~~~~~~~~~~~ 280 (407)
++||++++. ....+..|...|.+++|+|.. +.+|++|+.||.|++||+++ +.+
T Consensus 259 ~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~------~~~ 330 (410)
T 1vyh_C 259 RVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST------GMC 330 (410)
T ss_dssp EEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT------TEE
T ss_pred EEEECCCCc--eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC------Cce
Confidence 999999887 677888999999999999931 67899999999999999998 889
Q ss_pred eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCc
Q 046899 281 IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH 360 (407)
Q Consensus 281 ~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~ 360 (407)
+.++.+|...|++++|+|++++| ++|+.|++|++||+.+++.+..+.+|..+|++++|+|+
T Consensus 331 ~~~~~~h~~~v~~v~~~~~g~~l-~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~------------------ 391 (410)
T 1vyh_C 331 LMTLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT------------------ 391 (410)
T ss_dssp EEEEECCSSCEEEEEECSSSSCE-EEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS------------------
T ss_pred EEEEECCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCC------------------
Confidence 99999999999999999999976 69999999999999999999999999999999999998
Q ss_pred cceeeeEEEeeeEEEeec
Q 046899 361 GRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 361 ~~~i~~~~~d~~i~iwd~ 378 (407)
+..|++|+.|++|+||++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 889999999999999986
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=304.46 Aligned_cols=284 Identities=15% Similarity=0.214 Sum_probs=241.1
Q ss_pred ccCCCeeEEEEee-------cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC
Q 046899 34 NLVWPSLSCRWGP-------QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP 106 (407)
Q Consensus 34 ~~~~p~~s~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg 106 (407)
.+.-+..++.|.| .+++++.|+.+++|... . ........+.+|...|.+++|++ ++.++++|+.|+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~---~---~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~ 102 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR---D---ERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDA 102 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE---T---TEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTS
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC---C---CCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCC
Confidence 4556788889976 38899999999999221 1 11122334568999999999999 888999999999
Q ss_pred cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc
Q 046899 107 DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA 186 (407)
Q Consensus 107 ~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 186 (407)
+|++||+.+++....+..+...+ ..+........+++++.++.+++|+...++.
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~--------------------------~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDA--------------------------WTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCC--------------------------CCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred cEEEEECCCCCEEEEEeCCCccE--------------------------EEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 99999998876555544332211 1111122234578889999999999999999
Q ss_pred eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 187 ~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
...+..|...|.+++|+|++ ++|++|+.||.|++||+++++ ....+.+|..+|.+++|+| ++++|++|+.||.|++
T Consensus 157 ~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~i 232 (321)
T 3ow8_A 157 EYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKI 232 (321)
T ss_dssp EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEE
T ss_pred eEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEE
Confidence 99999999999999999999 899999999999999999887 6778889999999999999 9999999999999999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 346 (407)
||++. ++.+.++.+|...|.+++|+|++.+| ++++.|++|++||+++++.+..+.+|..+|++++|+|+
T Consensus 233 wd~~~------~~~~~~~~~h~~~v~~~~~sp~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~---- 301 (321)
T 3ow8_A 233 YDVQH------ANLAGTLSGHASWVLNVAFCPDDTHF-VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN---- 301 (321)
T ss_dssp EETTT------CCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT----
T ss_pred EECCC------cceeEEEcCCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC----
Confidence 99998 78899999999999999999999965 79999999999999999999999999999999999998
Q ss_pred cccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++++.|++|+|||..
T Consensus 302 --------------g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 --------------GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp --------------SSEEEEEETTCCEEEEECC
T ss_pred --------------CCEEEEEeCCCeEEEEeCC
Confidence 8899999999999999973
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-42 Score=306.78 Aligned_cols=270 Identities=17% Similarity=0.206 Sum_probs=230.2
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
.+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.....+..|...+ .. ..+
T Consensus 8 ~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v-------~~----------------~~~ 63 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPV-------RA----------------GKF 63 (304)
T ss_dssp EEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-------EE----------------EEE
T ss_pred eecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcE-------EE----------------EEE
Confidence 3458999999999999 88999999999999999999876665555443321 10 111
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA 237 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 237 (407)
.+. ...+++++.|+.+++||..+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++.. ....+.+
T Consensus 64 ~~~---~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~-~~~~~~~ 138 (304)
T 2ynn_A 64 IAR---KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA-LEQTFEG 138 (304)
T ss_dssp EGG---GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTE-EEEEECC
T ss_pred eCC---CCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcc-hhhhhcc
Confidence 112 2357889999999999999999999999999999999999999 7999999999999999987752 4567789
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcC--CCCCEEEEeeCCCeEE
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSP--DKSSVFGSSAEDGILN 314 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~--~~~~ll~s~~~d~~i~ 314 (407)
|...|.+++|+|.++.+|++|+.||.|++||++. ..+...+. .|...|..++|+| ++. +|++|+.|++|+
T Consensus 139 h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~ 211 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIK 211 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC------SSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEE
T ss_pred cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC------CCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEE
Confidence 9999999999996789999999999999999987 55555554 5668899999987 556 457999999999
Q ss_pred EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
+||+++++.+..+.+|..+|+.++|+|+ +..|++++.|++|+|||+. +++++..+.
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~------------------~~~l~s~s~Dg~i~iWd~~------~~~~~~~~~ 267 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPT------------------LPIIISGSEDGTLKIWNSS------TYKVEKTLN 267 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSS------------------SSEEEEEETTSCEEEEETT------TCCEEEEEC
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCC------------------CCEEEEEcCCCeEEEEECC------CCceeeecc
Confidence 9999999999999999999999999998 7889999999999999998 677888889
Q ss_pred hcccceeEeeccC
Q 046899 395 KFKSHIFGCDKSC 407 (407)
Q Consensus 395 ~h~~~v~~~~~s~ 407 (407)
+|...|++++|++
T Consensus 268 ~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 268 VGLERSWCIATHP 280 (304)
T ss_dssp CSSSSEEEEEECT
T ss_pred CCCccEEEEEECC
Confidence 9999999999864
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=310.35 Aligned_cols=267 Identities=16% Similarity=0.214 Sum_probs=230.8
Q ss_pred eeCCCceEEEEEeCC---CCeEEEEeeCCCcEEEEeCcCCCCc--ccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899 80 IIHPGEVNRIRELPQ---NSKIVATHTDSPDVLIWDVEAQPNR--HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~---~~~~l~tg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
.+|.+.|++++|+|. ++++|+||+.|++|+|||+...... ..+.+|.. .
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~--------------------------~ 82 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL--------------------------G 82 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--------------------------C
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC--------------------------C
Confidence 479999999999873 4679999999999999998765321 12233322 1
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
+..+........+++++.|+.+++||+.+++.+..+..|...+.+++|+|++ .+|++|+.||.|++||++++. ....
T Consensus 83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~--~~~~ 159 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGK--KEYS 159 (321)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCS--EEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCc--eeEE
Confidence 1222222333457889999999999999999999999999999999999999 899999999999999999887 5677
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
+..|...|.+++|+| ++++|++|+.||.|++||+++ ++++.++.+|..+|++++|+|++++| ++|+.|++|+
T Consensus 160 ~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~spd~~~l-~s~s~dg~i~ 231 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT------GKLLHTLEGHAMPIRSLTFSPDSQLL-VTASDDGYIK 231 (321)
T ss_dssp EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCCSSCCCEEEECTTSCEE-EEECTTSCEE
T ss_pred ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEcccCCceeEEEEcCCCCEE-EEEcCCCeEE
Confidence 778899999999999 999999999999999999998 88999999999999999999999955 7999999999
Q ss_pred EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
+||++..+....+.+|..+|++++|+|+ +..|++++.|++|+|||+. +++++..+.
T Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~------------------~~~l~s~s~D~~v~iwd~~------~~~~~~~~~ 287 (321)
T 3ow8_A 232 IYDVQHANLAGTLSGHASWVLNVAFCPD------------------DTHFVSSSSDKSVKVWDVG------TRTCVHTFF 287 (321)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTT------------------SSEEEEEETTSCEEEEETT------TTEEEEEEC
T ss_pred EEECCCcceeEEEcCCCCceEEEEECCC------------------CCEEEEEeCCCcEEEEeCC------CCEEEEEEc
Confidence 9999998888999999999999999998 8899999999999999998 788888899
Q ss_pred hcccceeEeeccC
Q 046899 395 KFKSHIFGCDKSC 407 (407)
Q Consensus 395 ~h~~~v~~~~~s~ 407 (407)
+|.+.|++++|++
T Consensus 288 ~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 288 DHQDQVWGVKYNG 300 (321)
T ss_dssp CCSSCEEEEEECT
T ss_pred CCCCcEEEEEECC
Confidence 9999999999985
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.1e-41 Score=304.66 Aligned_cols=286 Identities=16% Similarity=0.171 Sum_probs=223.8
Q ss_pred eeEEEEeec---ccccCccceEEEEeec--ccCcccCC-cceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 39 SLSCRWGPQ---LEQATYKNRQRLYLSE--QFNEEARS-PFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 39 ~~s~~~~~~---~~~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
..++.|.|+ +++++ +.+.|+|.+. .+...... ..........|...|++++|+| ++ .|++|+.||+|+|||
T Consensus 33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-ER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEe
Confidence 456788885 44444 6677888544 12222211 1223344556889999999999 54 678999999999999
Q ss_pred CcCCCCccccc----CcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee
Q 046899 113 VEAQPNRHAVL----GAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG 188 (407)
Q Consensus 113 ~~~~~~~~~~~----~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 188 (407)
+.+++...... +|.. .+..+........+++++.|+.+++||+.+++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~H~~--------------------------~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 110 LDENETLIVSKFCKYEHDD--------------------------IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS 163 (344)
T ss_dssp ECTTSSCEEEEEEEECCSS--------------------------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCceeEeeccccCCCC--------------------------CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99876554321 2322 11122222333568889999999999999999999
Q ss_pred eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
.+.+|...|++++|+|++..+|++++.|++|++||+++++ ....+ ..+...+.+++|+|.++++|++|+.||.|++
T Consensus 164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred EEcCcCCceEEEEecCCCCCceeeeccccccccccccccc--eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence 9999999999999999987789999999999999999888 34433 4566679999999977889999999999999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 346 (407)
||+++ ++++.++.+|...|++++|+|++..+||+|+.|++|+|||+++++ +..+.+|...|++++|+|+
T Consensus 242 wd~~~------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~---- 310 (344)
T 4gqb_B 242 VDTKS------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPL---- 310 (344)
T ss_dssp EESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSS----
T ss_pred EECCC------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCC----
Confidence 99998 899999999999999999999987667899999999999999865 4567889999999999998
Q ss_pred cccceeeeeEeeCccc-eeeeEEEeeeEEEeeccc
Q 046899 347 ETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~~ 380 (407)
+. .+++++.|++|++|++..
T Consensus 311 --------------~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 311 --------------NHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp --------------STTEEEEEETTSCEEEEECCC
T ss_pred --------------CCeEEEEEcCCCeEEEEECCC
Confidence 54 567899999999999973
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-41 Score=309.46 Aligned_cols=274 Identities=15% Similarity=0.192 Sum_probs=221.2
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeC------CCcEEEEeCcCCCCcccc----cCcCCCCC------CC-------CCcE
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTD------SPDVLIWDVEAQPNRHAV----LGAADSHP------DL-------DQSV 136 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~------dg~i~vwd~~~~~~~~~~----~~~~~~~~------~~-------d~~i 136 (407)
..|++.|++++|+| +|++||+|+. |+.|++|+..++.....+ ..|...+. +. |++|
T Consensus 39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 36999999999999 9999999997 778999998776544332 22322221 11 8999
Q ss_pred EEEeccccccc------cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEE
Q 046899 137 VLWSIQDHVSA------LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEF 210 (407)
Q Consensus 137 ~~w~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 210 (407)
++||+.++... ...+...+..+........+++++.++.+++||..+++.+..+.+|...|++++|+|++..+|
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 99999876332 123444455555555566789999999999999999999999999999999999999986789
Q ss_pred EEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC
Q 046899 211 CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA 290 (407)
Q Consensus 211 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~ 290 (407)
++++.|+.|++||+++++.........+...+.+++|+|.++.+|++|+.|+.|++||+++ ++++.++.+|...
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~------~~~~~~~~~~~~~ 271 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN------PDSAQTSAVHSQN 271 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC------GGGCEEECCCSSC
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC------CcEeEEEecccee
Confidence 9999999999999998874333445567788999999996678999999999999999998 8899999999999
Q ss_pred EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcC-cchhccccceeeeeEeeCccceeeeEEE
Q 046899 291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSS-DMLDIETKLLTSIGMHLIHGRLLVCLTM 369 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 369 (407)
|++++|+|++..+||+|+.|++|+|||+++++.+.. .+|..+|++++||| | +..|++++.
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d------------------~~~l~s~s~ 332 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLD------------------HSKFTTVGW 332 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSS------------------TTEEEEEET
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCC------------------CCEEEEEcC
Confidence 999999999876778999999999999998766554 47999999999998 5 778999999
Q ss_pred eeeEEEeecc
Q 046899 370 VKVLEIWRMI 379 (407)
Q Consensus 370 d~~i~iwd~~ 379 (407)
|++|++|++.
T Consensus 333 Dg~v~iW~~~ 342 (357)
T 4g56_B 333 DHKVLHHHLP 342 (357)
T ss_dssp TSCEEEEECC
T ss_pred CCeEEEEECC
Confidence 9999999997
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9e-41 Score=303.81 Aligned_cols=271 Identities=18% Similarity=0.277 Sum_probs=229.3
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CCC--------CCcEEEEec
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PDL--------DQSVVLWSI 141 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~--------d~~i~~w~~ 141 (407)
...+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.....+..+...+ ++. |+.+++|++
T Consensus 48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 445568999999999999 88999999999999999999887766665554432 111 899999999
Q ss_pred ccccc------ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC
Q 046899 142 QDHVS------ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD 215 (407)
Q Consensus 142 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~ 215 (407)
..... .+..+...+....... +..+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++|+.
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~ 204 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGAC 204 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred ccCCCcceeEEEecCCCccEEEEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeC
Confidence 76421 2333443333222211 2347889999999999999999999999999999999999998 89999999
Q ss_pred CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEE
Q 046899 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLC 293 (407)
Q Consensus 216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~ 293 (407)
|+.|++||++++. ....+.+|...|++++|+| ++++|++|+.||.|++||++. .+.+..+.. +...|++
T Consensus 205 d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 205 DASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNIICGITS 275 (340)
T ss_dssp TSCEEEEETTTCS--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTCCSCEEE
T ss_pred CCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC------CcEEEEEccCCcccceEE
Confidence 9999999999887 6788889999999999999 899999999999999999998 667766653 3357999
Q ss_pred EEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899 294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL 373 (407)
Q Consensus 294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i 373 (407)
++|+|+++++ ++|+.|+.|++||+.+.+.+..+.+|..+|++++|+|| +..|++|+.|++|
T Consensus 276 ~~~s~~g~~l-~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d------------------g~~l~s~s~D~~i 336 (340)
T 1got_B 276 VSFSKSGRLL-LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD------------------GMAVATGSWDSFL 336 (340)
T ss_dssp EEECTTSSEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT------------------SSCEEEEETTSCE
T ss_pred EEECCCCCEE-EEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC------------------CCEEEEEcCCccE
Confidence 9999999965 79999999999999999988999999999999999998 8899999999999
Q ss_pred EEee
Q 046899 374 EIWR 377 (407)
Q Consensus 374 ~iwd 377 (407)
+|||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9997
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=298.17 Aligned_cols=273 Identities=18% Similarity=0.243 Sum_probs=230.8
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCC------C--------CCcEEEEec
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPD------L--------DQSVVLWSI 141 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------~--------d~~i~~w~~ 141 (407)
...+.+|.+.|++++|+| ++++|+||+.||+|++||..+......+..+...+.. . |+.+.+|++
T Consensus 57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 345568999999999999 8899999999999999999887766555544333221 1 899999998
Q ss_pred ccc--------ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC-CcEEEE
Q 046899 142 QDH--------VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS-AQEFCS 212 (407)
Q Consensus 142 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s 212 (407)
... ...+..+...+...........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|.. .++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 643 12333455555555555555678999999999999999999999999999999999998852 279999
Q ss_pred EeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--CCC
Q 046899 213 VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--SAA 290 (407)
Q Consensus 213 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~~~ 290 (407)
|+.||.|++||+++++ +...+..|...|++++|+| ++++|++|+.|+.|++||++. ...+..+..+ ...
T Consensus 216 gs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~------~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRA------DREVAIYSKESIIFG 286 (354)
T ss_dssp EETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTCCSC
T ss_pred EeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCCcccc
Confidence 9999999999999988 6788889999999999999 899999999999999999998 6666666543 457
Q ss_pred EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe
Q 046899 291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV 370 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d 370 (407)
+.+++|+|++.+| ++|+.|++|++||+.+++.+..+.+|..+|++++|+|| +..|++++.|
T Consensus 287 ~~~~~~s~~g~~l-~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd------------------g~~l~sgs~D 347 (354)
T 2pbi_B 287 ASSVDFSLSGRLL-FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD------------------GTAFCSGSWD 347 (354)
T ss_dssp EEEEEECTTSSEE-EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT------------------SSCEEEEETT
T ss_pred eeEEEEeCCCCEE-EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC------------------CCEEEEEcCC
Confidence 9999999999955 79999999999999999988899999999999999999 8899999999
Q ss_pred eeEEEee
Q 046899 371 KVLEIWR 377 (407)
Q Consensus 371 ~~i~iwd 377 (407)
++|+||+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999996
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-39 Score=301.32 Aligned_cols=276 Identities=21% Similarity=0.276 Sum_probs=228.0
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEec
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSI 141 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~ 141 (407)
...+.+|.+.|++++|+| ++++|+||+.||+|+|||+.+++....+..|...+... |+.+++|++
T Consensus 59 ~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred eecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 345568999999999999 88999999999999999999887777777666554433 899999998
Q ss_pred cccc---------cccccCCCCCcccccCCC-CCccccccCCCCCCCCCCCCcCceeeE-----eecccCEEEEEECCCC
Q 046899 142 QDHV---------SALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESPSIGARGKY-----LGHEDTVEDVQFCPSS 206 (407)
Q Consensus 142 ~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~v~~l~~~~~~ 206 (407)
.... ..+..+...+........ ...+++++.|+.+++||+.+++.+..+ .+|...|.+++|+|.+
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 7531 123333333333222222 345889999999999999999988777 5789999999998854
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899 207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286 (407)
Q Consensus 207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 286 (407)
+++|++|+.|++|++||++.... ....+.+|...|++++|+| ++++|++|+.||.|++||+++ +.++..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~------~~~~~~~~~ 289 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRT------GHQLQVYNR 289 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTT------TEEEEEECC
T ss_pred CCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCC------CcEEEEecc
Confidence 48999999999999999985432 5677889999999999999 999999999999999999998 777777765
Q ss_pred CC-------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc----ccCCCcccCCCCcCcchhccccceeeee
Q 046899 287 HS-------AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY----GELKYPIIHPAYSSDMLDIETKLLTSIG 355 (407)
Q Consensus 287 h~-------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~----~~~~~~v~~~~~s~d~~~~~~~~~~~~~ 355 (407)
+. ..|++++|+|+|++| ++|+.||.|++||+...+....+ .+|...|++++|+||
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------------- 355 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLL-FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD------------- 355 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEE-EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS-------------
T ss_pred cccccccccCceEEEEECCCCCEE-EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC-------------
Confidence 43 348999999999965 69999999999999987776655 578899999999999
Q ss_pred EeeCccceeeeEEEeeeEEEeecc
Q 046899 356 MHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 356 ~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++|+.|++|+||++.
T Consensus 356 -----g~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 356 -----GSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -----SSEEEEECTTSCEEEEECC
T ss_pred -----CCEEEEeeCCCCEEEEecC
Confidence 8899999999999999987
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.5e-40 Score=321.66 Aligned_cols=350 Identities=16% Similarity=0.202 Sum_probs=255.2
Q ss_pred CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
....+.|.|+ ++++. ++.+++|. ... ......+.+|.+.|++++|+| ++++||+|+.||+|+|||+.
T Consensus 20 ~~~~~~~spdg~~l~~~~-~~~v~l~~---~~~-----~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~ 89 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-GTSVYTVP---VGS-----LTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTT 89 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEE---TTC-----SSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESS
T ss_pred ceeEEeeCCCCCEEEeCC-CCEEEEec---CCC-----cccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECC
Confidence 4455677774 55655 55788992 111 122334558999999999999 89999999999999999997
Q ss_pred CCCC--cccccCcCCCCCCC------------------CCcEEEEeccccccccccCCCCCcccccCCCCC-ccccccCC
Q 046899 115 AQPN--RHAVLGAADSHPDL------------------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANS-KNASKSGG 173 (407)
Q Consensus 115 ~~~~--~~~~~~~~~~~~~~------------------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 173 (407)
+++. ...+.+|...+.++ .+.+.+||.......+..+...+..+...+... .+++++.|
T Consensus 90 ~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 90 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred CCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCC
Confidence 5443 23344444332211 246888886655555666666655555555544 48899999
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec-------ccCcceEEEE
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-------AHNADIHCVD 246 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~l~ 246 (407)
+.+++||...++....+.+|...|.+++|+|++ .+|++|+.|++|++||+.+++ ....+. +|...|.+++
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~ 246 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLT 246 (611)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEE
T ss_pred CeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEE
Confidence 999999999998889999999999999999999 899999999999999999887 455542 7999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCCCCCCC-------------------------------------CCCCceeeecCCCC
Q 046899 247 WNPHDVNLILTGSADNSIHMFDRRKLTSD-------------------------------------GVGSPIHKFEGHSA 289 (407)
Q Consensus 247 ~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-------------------------------------~~~~~~~~~~~h~~ 289 (407)
|+| ++++|++|+.|++|++||+++.... ..+.+...+.+|..
T Consensus 247 ~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~ 325 (611)
T 1nr0_A 247 WSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK 325 (611)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred ECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC
Confidence 999 9999999999999999999862100 00112345568999
Q ss_pred CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-ccCCCcccCCCCcCc-------------chhcccc------
Q 046899 290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-GELKYPIIHPAYSSD-------------MLDIETK------ 349 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d-------------~~~~~~~------ 349 (407)
.|++++|+|++++| ++++.|++|++||+.+++....+ ..|...|.+++|+++ +|+...+
T Consensus 326 ~v~~l~~spdg~~l-~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~ 404 (611)
T 1nr0_A 326 AITALSSSADGKTL-FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK 404 (611)
T ss_dssp CEEEEEECTTSSEE-EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTS
T ss_pred CEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccc
Confidence 99999999999965 69999999999999987766554 456666666666543 1111100
Q ss_pred --------------------------------------------ceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC
Q 046899 350 --------------------------------------------LLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385 (407)
Q Consensus 350 --------------------------------------------~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~ 385 (407)
.......+.+.+..|++|+.|++|+|||+.....
T Consensus 405 ~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-- 482 (611)
T 1nr0_A 405 AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-- 482 (611)
T ss_dssp CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--
T ss_pred eeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce--
Confidence 0001233445577899999999999999972110
Q ss_pred hHHHHHHHhhcccceeEeeccC
Q 046899 386 EEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 386 ~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
..+.. .+|...|++|+|||
T Consensus 483 --~~~~~-~~h~~~v~~v~fsp 501 (611)
T 1nr0_A 483 --SEVKT-IVHPAEITSVAFSN 501 (611)
T ss_dssp --EEEEE-EECSSCEEEEEECT
T ss_pred --eeeec-cCCCCceEEEEECC
Confidence 01122 57999999999996
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-39 Score=317.74 Aligned_cols=339 Identities=22% Similarity=0.338 Sum_probs=273.7
Q ss_pred hhhhhhccCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE
Q 046899 15 RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE 91 (407)
Q Consensus 15 ~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 91 (407)
.+.+|+.+...+. .+. ...-+..++.|.|+ +++++.++.+++|. ..........+|...|++++|
T Consensus 203 ~v~~w~~~~~~~~-~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~---------~~~~~~~~~~~~~~~v~~v~~ 270 (577)
T 2ymu_A 203 TVKLWNRNGQLLQ-TLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN---------RNGQLLQTLTGHSSSVNGVAF 270 (577)
T ss_dssp EEEEECTTSCEEE-EEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC---------TTSCEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCcEEE-EEe--cCCCCEEEEEECCCCCEEEEEeCCCEEEEEe---------CCCCEEEEEecCCCCEEEEEE
Confidence 4567776554332 222 23445667788774 78889999999992 112233455689999999999
Q ss_pred eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCC------CC--------CCcEEEEecccccc-ccccCCCCCc
Q 046899 92 LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHP------DL--------DQSVVLWSIQDHVS-ALAAEPGSAK 156 (407)
Q Consensus 92 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~--------d~~i~~w~~~~~~~-~~~~~~~~~~ 156 (407)
+| ++++|++++.|+.|++||... +....+.+|...+. +. |+.+++|++..... .+..+...+.
T Consensus 271 ~~-d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~ 348 (577)
T 2ymu_A 271 RP-DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348 (577)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE
T ss_pred cC-CCCEEEEEeCCCEEEEEeCCC-cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE
Confidence 99 889999999999999999753 44444555543321 11 89999999876532 3334444444
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
.+........+++++.++.+++|+. +++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||.. ++ ....+.
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~--~~~~~~ 423 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLT 423 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CC--EEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CC--EEEEec
Confidence 4444555567888999999999995 567788899999999999999999 789999999999999954 44 577788
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
+|...|++++|+| ++++|++++.|+.|++||.. ++.+..+.+|...|++++|+|++++| ++++.|++|++|
T Consensus 424 ~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~v~~~~~spd~~~l-as~~~d~~i~iw 494 (577)
T 2ymu_A 424 GHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLW 494 (577)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-------SCEEEEEECCSSCEEEEEECTTSCEE-EEEETTSEEEEE
T ss_pred CCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC-------CCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEE
Confidence 9999999999999 89999999999999999964 57889999999999999999999955 799999999999
Q ss_pred eCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhc
Q 046899 317 DHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKF 396 (407)
Q Consensus 317 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h 396 (407)
|. +++.++.+.+|..+|++++|+|| +.+|++++.|++|+|||.. ++++..+.+|
T Consensus 495 ~~-~~~~~~~~~~h~~~v~~l~~s~d------------------g~~l~s~~~dg~v~lwd~~-------~~~~~~~~~h 548 (577)
T 2ymu_A 495 NR-NGQLLQTLTGHSSSVRGVAFSPD------------------GQTIASASDDKTVKLWNRN-------GQLLQTLTGH 548 (577)
T ss_dssp ET-TSCEEEEEECCSSCEEEEEECTT------------------SSCEEEEETTSEEEEECTT-------SCEEEEEECC
T ss_pred cC-CCCEEEEEeCCCCCEEEEEEcCC------------------CCEEEEEECcCEEEEEeCC-------CCEEEEEcCC
Confidence 95 56788899999999999999999 8899999999999999964 6778889999
Q ss_pred ccceeEeeccC
Q 046899 397 KSHIFGCDKSC 407 (407)
Q Consensus 397 ~~~v~~~~~s~ 407 (407)
.+.|++++||+
T Consensus 549 ~~~v~~~~fs~ 559 (577)
T 2ymu_A 549 SSSVWGVAFSP 559 (577)
T ss_dssp SSCEEEEEECT
T ss_pred CCCEEEEEEcC
Confidence 99999999986
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=302.98 Aligned_cols=276 Identities=16% Similarity=0.178 Sum_probs=213.4
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
.|...|.+++|+| +|++|++++ |+++|+||............+... ........ ...+..+..
T Consensus 28 ~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~-----~~~~~~~~----------~~~v~~~~~ 90 (344)
T 4gqb_B 28 CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEG-----FCSAGVQT----------EAGVADLTW 90 (344)
T ss_dssp SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGG-----GCSEEEEE----------SSCEEEEEE
T ss_pred cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcc-----eeeeeecc----------CCCEEEEEE
Confidence 4788899999999 899998887 678999974321100000000000 00000000 111111111
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeE----eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKY----LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
.. +..+++++.||.|++||+.+++.+..+ .+|...|++++|+|++ ++|++|+.|++|++||+++++ ....+.
T Consensus 91 s~-d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~--~~~~~~ 166 (344)
T 4gqb_B 91 VG-ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQV--VLSSYR 166 (344)
T ss_dssp ET-TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEEC
T ss_pred eC-CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEc
Confidence 11 134778999999999999988766543 4799999999999999 899999999999999999988 788889
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--CCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
+|...|++++|+|.+..+|++|+.||.|++||+++ ++++..+. .|...+.+++|+|++..+|++|+.|++|+
T Consensus 167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC------PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS------SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred CcCCceEEEEecCCCCCceeeeccccccccccccc------cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 99999999999995557899999999999999998 78887775 35668999999998877889999999999
Q ss_pred EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
+||+++++.+..+.+|..+|++++|+|+. ..+|++++.|++|+|||+. +++++ .+.
T Consensus 241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g-----------------~~~lasgs~D~~i~vwd~~------~~~~~-~~~ 296 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHS-----------------VPFLASLSEDCSLAVLDSS------LSELF-RSQ 296 (344)
T ss_dssp EEESCC--CCEEEECCSSCEEEEEECSSS-----------------SCCEEEEETTSCEEEECTT------CCEEE-EEC
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCC-----------------CeEEEEEeCCCeEEEEECC------CCcEE-EEc
Confidence 99999999999999999999999999981 3578899999999999998 45443 468
Q ss_pred hcccceeEeeccC
Q 046899 395 KFKSHIFGCDKSC 407 (407)
Q Consensus 395 ~h~~~v~~~~~s~ 407 (407)
+|.+.|++|+|||
T Consensus 297 ~H~~~V~~v~~sp 309 (344)
T 4gqb_B 297 AHRDFVRDATWSP 309 (344)
T ss_dssp CCSSCEEEEEECS
T ss_pred CCCCCEEEEEEeC
Confidence 9999999999986
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.9e-40 Score=320.54 Aligned_cols=327 Identities=13% Similarity=0.149 Sum_probs=251.2
Q ss_pred CCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 36 VWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 36 ~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
.-+..++.|.|+ +++++.|+.+++|.. .+......+.+|.+.|++++|+| ++++||+|+.|++|++|
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~--------~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lw 217 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEG--------PPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLY 217 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEET--------TTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEEC--------CCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEE
Confidence 446678889874 789999999999921 11222334557999999999999 89999999999999999
Q ss_pred eCcCCCCccccc-------CcCCCCC------CC--------CCcEEEEeccccccccccCCCC-C--cccccCCCCCcc
Q 046899 112 DVEAQPNRHAVL-------GAADSHP------DL--------DQSVVLWSIQDHVSALAAEPGS-A--KSTASGGANSKN 167 (407)
Q Consensus 112 d~~~~~~~~~~~-------~~~~~~~------~~--------d~~i~~w~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 167 (407)
|+.+++....+. +|...+. +. |++|++||+.++.......... . ...........+
T Consensus 218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred ECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 998877655542 4443322 22 9999999998764322211110 0 000000123567
Q ss_pred ccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee------------
Q 046899 168 ASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE------------ 235 (407)
Q Consensus 168 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------ 235 (407)
++++.++.+++|+...++....+.+|...|++++|+|++ .+|++++.|++|++||+.++.. ...+
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~--~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGIS--NRVFPDVHATMITGIK 374 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE--EECSSCSCSSCEEEEE
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCce--eeecccCCcceEEEEE
Confidence 889999999999999888888888999999999999999 8999999999999999986541 1100
Q ss_pred ----------------------------------------------------------------------cccCcceEEE
Q 046899 236 ----------------------------------------------------------------------KAHNADIHCV 245 (407)
Q Consensus 236 ----------------------------------------------------------------------~~~~~~v~~l 245 (407)
..|...+.++
T Consensus 375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v 454 (611)
T 1nr0_A 375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV 454 (611)
T ss_dssp ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence 0123457889
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCc--eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-CC
Q 046899 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP--IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-IG 322 (407)
Q Consensus 246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-~~ 322 (407)
+|+| ++++|++|+.|+.|++||+.. ... +.. .+|...|++++|+|+|++| ++++.|++|++||+.+ ++
T Consensus 455 a~sp-dg~~lasgs~D~~v~lwd~~~------~~~~~~~~-~~h~~~v~~v~fspdg~~l-as~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 455 ALSN-DKQFVAVGGQDSKVHVYKLSG------ASVSEVKT-IVHPAEITSVAFSNNGAFL-VATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp EECT-TSCEEEEEETTSEEEEEEEET------TEEEEEEE-EECSSCEEEEEECTTSSEE-EEEETTSCEEEEEGGGTTE
T ss_pred EEeC-CCCEEEEeCCCCeEEEEEccC------Cceeeeec-cCCCCceEEEEECCCCCEE-EEEcCCCCEEEEEcCCCCc
Confidence 9999 999999999999999999986 332 334 5799999999999999965 7999999999999987 44
Q ss_pred cccc--cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH-HH-HHHhhc-c
Q 046899 323 EKQD--YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE-VL-AELDKF-K 397 (407)
Q Consensus 323 ~~~~--~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~-~~-~~~~~h-~ 397 (407)
.... +..|..+|++++|||| +..|++++.|++|+|||+. .++ ++ ..+.+| .
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspd------------------g~~lasgs~D~~v~lW~~~------~~~~~~~~~~~~h~~ 581 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPD------------------NVRLATGSLDNSVIVWNMN------KPSDHPIIIKGAHAM 581 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTT------------------SSEEEEEETTSCEEEEETT------CTTSCCEEETTSSTT
T ss_pred eeeeeeeeecccceeEEEECCC------------------CCEEEEEECCCcEEEEECC------CcccccchhhccCcc
Confidence 4443 3448999999999999 8999999999999999997 332 23 457789 8
Q ss_pred cceeEeeccC
Q 046899 398 SHIFGCDKSC 407 (407)
Q Consensus 398 ~~v~~~~~s~ 407 (407)
+.|++++|++
T Consensus 582 ~~v~~v~fs~ 591 (611)
T 1nr0_A 582 SSVNSVIWLN 591 (611)
T ss_dssp SCEEEEEEEE
T ss_pred cCeeEEEEcC
Confidence 9999999984
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-38 Score=283.51 Aligned_cols=274 Identities=20% Similarity=0.267 Sum_probs=229.2
Q ss_pred eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899 75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
......+|.+.|++++|+| ++++|++|+.||.|++|++.+++....+.+|...+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v------------------------- 68 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------------------------- 68 (312)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-------------------------
T ss_pred eEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCce-------------------------
Confidence 3455568999999999999 88999999999999999998877666555543321
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
..+........+++++.++.+++||+.+++.+..+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++ ....
T Consensus 69 -~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~--~~~~ 144 (312)
T 4ery_A 69 -SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK--CLKT 144 (312)
T ss_dssp -EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC--EEEE
T ss_pred -EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCE--EEEE
Confidence 111122223457889999999999999999999999999999999999998 899999999999999999887 6778
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
+..|..+|.+++|+| ++++|++|+.||.|++||+++ ++.+..+. .+..++..++|+|+++++ ++++.|+.|
T Consensus 145 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i 216 (312)
T 4ery_A 145 LPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS------GQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTL 216 (312)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCSSCCCEEEEEECTTSSEE-EEEETTTEE
T ss_pred ecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CceeeEEeccCCCceEEEEECCCCCEE-EEEcCCCeE
Confidence 889999999999999 899999999999999999998 77777664 466789999999999965 699999999
Q ss_pred EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899 314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL 393 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 393 (407)
++||+++++.+..+.++......+.. ......+..|++++.|+.|++||+. +++++..+
T Consensus 217 ~iwd~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~sg~~dg~i~vwd~~------~~~~~~~~ 275 (312)
T 4ery_A 217 KLWDYSKGKCLKTYTGHKNEKYCIFA---------------NFSVTGGKWIVSGSEDNLVYIWNLQ------TKEIVQKL 275 (312)
T ss_dssp EEEETTTTEEEEEECSSCCSSSCCCE---------------EEECSSSCEEEECCTTSCEEEEETT------TCCEEEEE
T ss_pred EEEECCCCcEEEEEEecCCceEEEEE---------------EEEeCCCcEEEEECCCCEEEEEECC------Cchhhhhh
Confidence 99999998888888877665444322 1111236789999999999999998 67788889
Q ss_pred hhcccceeEeeccC
Q 046899 394 DKFKSHIFGCDKSC 407 (407)
Q Consensus 394 ~~h~~~v~~~~~s~ 407 (407)
.+|.+.|.+++|++
T Consensus 276 ~~h~~~v~~~~~~p 289 (312)
T 4ery_A 276 QGHTDVVISTACHP 289 (312)
T ss_dssp CCCSSCEEEEEECS
T ss_pred hccCCcEEEEeecC
Confidence 99999999999985
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-37 Score=301.02 Aligned_cols=318 Identities=22% Similarity=0.372 Sum_probs=254.7
Q ss_pred hhhhhhhhccCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEE
Q 046899 13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRI 89 (407)
Q Consensus 13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 89 (407)
+..+++|+.+...+.. +. ...-+...+.|.|+ +++++.++.+++|. ..........+|.+.|.++
T Consensus 242 d~~i~~w~~~~~~~~~-~~--~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~---------~~~~~~~~~~~h~~~v~~~ 309 (577)
T 2ymu_A 242 DKTVKLWNRNGQLLQT-LT--GHSSSVNGVAFRPDGQTIASASDDKTVKLWN---------RNGQLLQTLTGHSSSVWGV 309 (577)
T ss_dssp TSCEEEECTTSCEEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEE---------TTSCEEEEECCCSSCEEEE
T ss_pred CCEEEEEeCCCCEEEE-Ee--cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe---------CCCcEEEEEecCCCCeEEE
Confidence 3456778776554432 22 23445667788774 77888999999992 1112234455899999999
Q ss_pred EEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CCC--------CCcEEEEeccccc-cccccCCCC
Q 046899 90 RELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PDL--------DQSVVLWSIQDHV-SALAAEPGS 154 (407)
Q Consensus 90 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~--------d~~i~~w~~~~~~-~~~~~~~~~ 154 (407)
+|+| ++++|++++.||+|++||..... ...+.+|...+ ++. ++.+++|+..... ..+..+...
T Consensus 310 ~~~~-~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~ 387 (577)
T 2ymu_A 310 AFSP-DGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 387 (577)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSC
T ss_pred EECC-CCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCC
Confidence 9999 88999999999999999987543 33333433322 221 8999999976542 233444555
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
+..+........+++++.++.+++||. +++.+..+.+|...|++++|+|++ .+|++++.|+.|++||.. ++ ....
T Consensus 388 v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~-~~--~~~~ 462 (577)
T 2ymu_A 388 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRN-GQ--LLQT 462 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT-SC--EEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECC-CC--EEEE
Confidence 444445555567889999999999995 567788899999999999999999 899999999999999964 44 5777
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
+.+|...|.+++|+| ++++|++++.|+.|++||.. ++++.++.+|...|++++|+|++++| |+++.|+.|+
T Consensus 463 ~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~ 533 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVK 533 (577)
T ss_dssp EECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETT-------SCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEE
T ss_pred EcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCC-------CCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEE
Confidence 889999999999999 99999999999999999964 68899999999999999999999976 6999999999
Q ss_pred EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899 315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR 377 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd 377 (407)
+||. +++.+..+.+|..+|++++|+|| +.+|++++.|++|++||
T Consensus 534 lwd~-~~~~~~~~~~h~~~v~~~~fs~d------------------g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 534 LWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------GQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECT-TSCEEEEEECCSSCEEEEEECTT------------------SSCEEEEETTSCEEEEC
T ss_pred EEeC-CCCEEEEEcCCCCCEEEEEEcCC------------------CCEEEEEeCCCEEEEeC
Confidence 9996 56788899999999999999999 88999999999999997
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.4e-37 Score=275.00 Aligned_cols=283 Identities=17% Similarity=0.184 Sum_probs=226.2
Q ss_pred CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
.-+...+.|.|+ +++++.|+.+++| ++.. .........|..+|.+++|+| ++++|++|+.|++|++||
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lW---d~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELW---NYET-----QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEE---ETTT-----TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEE---ECCC-----CceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 345677888874 8899999999999 2211 122334457999999999999 889999999999999999
Q ss_pred CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-ceeeEe
Q 046899 113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-ARGKYL 191 (407)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~ 191 (407)
+.+++....+.+|...+ ..+...+....+++++.|+.+++||+..+. ....+.
T Consensus 84 ~~~~~~~~~~~~h~~~v--------------------------~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYI--------------------------RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp TTTCCEEEEEECCSSCE--------------------------EEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCcE--------------------------EEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 99888777666664431 111122223457889999999999998764 456788
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC-CCCEEEEEeCCCcEEEEeCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~ 270 (407)
+|...|.+++|+|.++.+|++|+.|++|++||+++... .......|...+..++|+|. ++.+|++|+.|+.|++||++
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 99999999999996548999999999999999987763 23334466788999999762 56799999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc
Q 046899 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL 350 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 350 (407)
+ ++++.++.+|...|.+++|+|+++. |++|+.||+|++||+++++.+..+..+...+++++|+|+.
T Consensus 217 ~------~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 282 (304)
T 2ynn_A 217 T------KSCVATLEGHMSNVSFAVFHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG------- 282 (304)
T ss_dssp T------TEEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC-------
T ss_pred C------CccceeeCCCCCCEEEEEECCCCCE-EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC-------
Confidence 8 8899999999999999999999995 5799999999999999999999998888888888887761
Q ss_pred eeeeeEeeCccc-eeeeEEEeeeEEEeecc
Q 046899 351 LTSIGMHLIHGR-LLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 351 ~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~ 379 (407)
+. .+++|+ +..+.+|++.
T Consensus 283 ----------~~~~~asg~-~~g~~~~~~~ 301 (304)
T 2ynn_A 283 ----------RKNYIASGF-DNGFTVLSLG 301 (304)
T ss_dssp ----------GGGCEEEEE-TTEEEEEECC
T ss_pred ----------CceEEEEec-CCceEEEEec
Confidence 23 455655 4457788876
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-38 Score=285.35 Aligned_cols=290 Identities=15% Similarity=0.206 Sum_probs=222.0
Q ss_pred CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
+...+.|.|+ +++++.|+.+++|-.. ............+|.+.|++++|+| ++++||+|+.|++|++||+.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~-----~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTE-----GDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEE-----TTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcC-----CCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEcc
Confidence 5667899884 8899999999999221 1111111222247999999999999 88999999999999999987
Q ss_pred CCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC---ceee
Q 046899 115 AQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG---ARGK 189 (407)
Q Consensus 115 ~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~ 189 (407)
... +...+.+|... +..+........+++++.|+.+++||+.... .+..
T Consensus 92 ~~~~~~~~~~~~h~~~--------------------------v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 92 QDDFECVTTLEGHENE--------------------------VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp CC-EEEEEEECCCSSC--------------------------EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEEccCCCCC--------------------------ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 653 23334444322 1111222233468889999999999987654 3556
Q ss_pred EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
+.+|...|.+++|+|++ .+|++|+.|+.|++||++++...+...+.+|...|++++|+| ++++|++|+.||.|++||.
T Consensus 146 ~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred ecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEecc
Confidence 77899999999999999 799999999999999998876334567889999999999999 9999999999999999997
Q ss_pred CCCCCCC---------CCCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc---------cccccC
Q 046899 270 RKLTSDG---------VGSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK---------QDYGEL 330 (407)
Q Consensus 270 ~~~~~~~---------~~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~---------~~~~~~ 330 (407)
....... ...++.++.+ |...|.+++|+|++..| ++++.|+.|++|+....... ....+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL-ATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCE-EEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEE-EEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 5422110 0123445555 88999999999999965 79999999999998764322 123578
Q ss_pred CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 331 KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 331 ~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
...|++++|+|+. ...|++++.|++|+||++.
T Consensus 303 ~~~V~~v~~~p~~-----------------~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 303 SQDVNCVAWNPKE-----------------PGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp SSCEEEEEECSSS-----------------TTEEEEEETTSCEEEEEEC
T ss_pred cCcEeEeEEeCCC-----------------ceEEEEcCCCCcEEEEEec
Confidence 8899999999981 3589999999999999998
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.9e-38 Score=290.48 Aligned_cols=287 Identities=16% Similarity=0.219 Sum_probs=222.4
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
.....+|.+.|++++|+| ++++||+|+ ++.+++|++.+++....+..+.....+. ..+.. .........+
T Consensus 57 ~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~-~~~~~-------~~~~~~~~~v 126 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNT-------SSSPSSDLYI 126 (393)
T ss_dssp EEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------CCCCBE
T ss_pred eEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc-ccccc-------cccCCCceeE
Confidence 345567999999999999 889999987 6899999999887666554432211000 00000 0000000011
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 235 (407)
..+........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++ ....+
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~ 203 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL 203 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe--eEEEE
Confidence 122233334568889999999999999999999999999999999999999 799999999999999999877 44444
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-------cCCCCCEEEEEEcCCCCCEEEEee
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-------EGHSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
.+...+.+++|+|.++++|++|+.||.|++||+++ +..+..+ .+|...|.+++|+|++.+| ++|+
T Consensus 204 -~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s 275 (393)
T 1erj_A 204 -SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-VSGS 275 (393)
T ss_dssp -ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT------CCEEEEEC------CCCSSCEEEEEECTTSSEE-EEEE
T ss_pred -EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC------CcEEEeecccccCCCCCCCCEEEEEECCCCCEE-EEEe
Confidence 46678999999997889999999999999999998 6777666 5799999999999999965 7999
Q ss_pred CCCeEEEEeCCCCC------------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899 309 EDGILNIWDHEKIG------------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW 376 (407)
Q Consensus 309 ~d~~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw 376 (407)
.|++|++||+++.. ....+.+|...|.+++|+++ +.+|++++.|++|++|
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------~~~l~sgs~D~~v~iw 337 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------------------DEYILSGSKDRGVLFW 337 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG------------------GCEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC------------------CCEEEEEeCCCeEEEE
Confidence 99999999998643 23455677778888888777 7899999999999999
Q ss_pred eccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 377 RMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 377 d~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
|+. +++++..+.+|.+.|.+++|++
T Consensus 338 d~~------~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 338 DKK------SGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp ETT------TCCEEEEEECCSSCEEEEEECS
T ss_pred ECC------CCeEEEEECCCCCCEEEEEecC
Confidence 998 6777888999999999999863
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-37 Score=287.88 Aligned_cols=267 Identities=14% Similarity=0.256 Sum_probs=224.2
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
.+.-|..++.|.|. +++++.|+.+++| ++.... ......+|.+.|++++|+| ++++|++|+.|++|++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vw---d~~~~~-----~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVW---DYETGD-----FERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKL 176 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEE---ETTTCC-----CCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEE---ECCCCc-----EEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEE
Confidence 34557778899874 8899999999999 222111 1234457999999999999 8889999999999999
Q ss_pred EeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecccccc--ccccCCCCCcccccCCCCCccccccCCC
Q 046899 111 WDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVS--ALAAEPGSAKSTASGGANSKNASKSGGN 174 (407)
Q Consensus 111 wd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (407)
||+.+.++...+.+|...+... |++|++||+.++.. .+..+...+...........+++++.|+
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 9999888877777776543322 99999999987743 3444555555555555566789999999
Q ss_pred CCCCCCCCCcCceeeEeecccCEEEEEECCCC-------------------CcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSS-------------------AQEFCSVGDDSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 235 (407)
.+++||+.+++....+.+|...|.+++|+|++ ..+|++|+.|+.|++||++++. +...+
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~ 334 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTL 334 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEE
T ss_pred eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEE
Confidence 99999999999999999999999999999962 2589999999999999999888 67888
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
.+|...|.+++|+| ++++|++|+.||.|++||+++ ++++.++.+|...|++++|+|++.+| ++|+.|++|++
T Consensus 335 ~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~v 406 (410)
T 1vyh_C 335 VGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN------KRCMKTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKV 406 (410)
T ss_dssp ECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTT------SCCCEEEECCSSCEEEEEECSSSSCE-EEEETTSEEEE
T ss_pred ECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC------CceEEEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEE
Confidence 89999999999999 999999999999999999998 88999999999999999999999976 79999999999
Q ss_pred EeCC
Q 046899 316 WDHE 319 (407)
Q Consensus 316 wd~~ 319 (407)
|+++
T Consensus 407 W~~r 410 (410)
T 1vyh_C 407 WECR 410 (410)
T ss_dssp EC--
T ss_pred EeCC
Confidence 9964
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-38 Score=294.29 Aligned_cols=296 Identities=14% Similarity=0.238 Sum_probs=236.0
Q ss_pred CccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC----CCCcccccCcCC
Q 046899 52 TYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA----QPNRHAVLGAAD 127 (407)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~----~~~~~~~~~~~~ 127 (407)
+.|+.+++|. ....... .......|.+.|++++|+| ++++|++|+.||.|++||+.+ ......+.+|..
T Consensus 42 ~~d~~v~iw~---~~~~~~~---~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~ 114 (416)
T 2pm9_A 42 STDSSLELWS---LLAADSE---KPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS 114 (416)
T ss_dssp CCCCCCEEEE---SSSGGGC---SCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS
T ss_pred CCCCeEEEEE---ccCCCCC---cEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCcc
Confidence 7888999992 2222111 2333446999999999999 888999999999999999987 334455555554
Q ss_pred CCCCC---------------CCcEEEEeccccc------ccc-----ccCCCCCcccccCCC-CCccccccCCCCCCCCC
Q 046899 128 SHPDL---------------DQSVVLWSIQDHV------SAL-----AAEPGSAKSTASGGA-NSKNASKSGGNGDKPLE 180 (407)
Q Consensus 128 ~~~~~---------------d~~i~~w~~~~~~------~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d 180 (407)
.+..+ |+.|++||+.... ... ..+...+..+..... ...+++++.++.+++||
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 43221 8999999998765 222 223344444444444 45688899999999999
Q ss_pred CCCcCceeeEeec------ccCEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCCCceeeec-ccCcceEEEEecCC
Q 046899 181 SPSIGARGKYLGH------EDTVEDVQFCPSSAQEFCSVGDDS---CLILWDARSGSTPAVKVEK-AHNADIHCVDWNPH 250 (407)
Q Consensus 181 ~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~ 250 (407)
+.+++.+..+..+ ...|.+++|+|++..+|++++.|+ .|++||++++.. ....+. +|...|.+++|+|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~ 273 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQ 273 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSS
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCC
Confidence 9999988888776 789999999999867999999999 999999998743 355666 89999999999997
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE- 329 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~- 329 (407)
++++|++++.||.|++||+++ ++++..+..|...|++++|+|+++.+|++++.|+.|++||+...........
T Consensus 274 ~~~~l~s~~~dg~v~~wd~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 347 (416)
T 2pm9_A 274 DEHLLLSSGRDNTVLLWNPES------AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET 347 (416)
T ss_dssp CSSCEEEEESSSEEEEECSSS------CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---
T ss_pred CCCeEEEEeCCCCEEEeeCCC------CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccc
Confidence 789999999999999999998 8999999999999999999999955778999999999999998765543322
Q ss_pred ----------------------------------CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEE
Q 046899 330 ----------------------------------LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEI 375 (407)
Q Consensus 330 ----------------------------------~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~i 375 (407)
+..++++++|||| +..|++++.|++|+|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------------------g~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG------------------GKLVQITPDGKGVSI 409 (416)
T ss_dssp -------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT------------------TEEECBCTTSSCBCC
T ss_pred cccccCCcccccccccccccccccccccccCCccccCCccceEEeeC------------------CeEEEEeCCCCeEEE
Confidence 4556667777777 889999999999999
Q ss_pred eecc
Q 046899 376 WRMI 379 (407)
Q Consensus 376 wd~~ 379 (407)
|++.
T Consensus 410 w~~~ 413 (416)
T 2pm9_A 410 TNPK 413 (416)
T ss_dssp BCCC
T ss_pred EEec
Confidence 9997
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=284.64 Aligned_cols=279 Identities=16% Similarity=0.222 Sum_probs=213.0
Q ss_pred EEEeeCCC-ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc---ccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899 77 FKTIIHPG-EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA---VLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152 (407)
Q Consensus 77 ~~~~~h~~-~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~ 152 (407)
..+.+|.+ .|++++|+| ++++||+|+.|++|+|||+.++..... ..+|..
T Consensus 9 ~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~------------------------- 62 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR------------------------- 62 (345)
T ss_dssp EEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS-------------------------
T ss_pred eeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC-------------------------
Confidence 34457987 999999999 899999999999999999986532211 112221
Q ss_pred CCCcccccCCCCCccccccCCCCCCCCCCCCc--CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-
Q 046899 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSI--GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST- 229 (407)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 229 (407)
.+..+........+++++.|+.+++|+.... +.+..+.+|...|.+++|+|++ ++|++|+.|+.|++||+++...
T Consensus 63 -~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~ 140 (345)
T 3fm0_A 63 -TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEY 140 (345)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCE
T ss_pred -cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCe
Confidence 1112222223356888999999999988765 4567888999999999999999 8999999999999999987652
Q ss_pred CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
.....+..|...|.+++|+| ++.+|++|+.|+.|++||.+... ..+..++.+|...|++++|+|++.+| ++++.
T Consensus 141 ~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~l-~s~s~ 214 (345)
T 3fm0_A 141 ECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQRL-ASCSD 214 (345)
T ss_dssp EEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSEE-EEEET
T ss_pred EEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCEE-EEEeC
Confidence 23456778999999999999 89999999999999999998721 23567889999999999999999965 79999
Q ss_pred CCeEEEEeCCCCCccc---------------cccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899 310 DGILNIWDHEKIGEKQ---------------DYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL 373 (407)
Q Consensus 310 d~~i~vwd~~~~~~~~---------------~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i 373 (407)
|++|++||........ .+.+ |...|++++|+++ +..+++++.|++|
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------------------~~~l~s~~~d~~i 276 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL------------------TGALATACGDDAI 276 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT------------------TCCEEEEETTSCE
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC------------------CCEEEEEeCCCeE
Confidence 9999999975432221 2222 5666777777776 7889999999999
Q ss_pred EEeeccccccC--ChH-HHHHHHhhcccceeEeeccC
Q 046899 374 EIWRMIDLIYR--PEE-EVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 374 ~iwd~~~~~~~--~~~-~~~~~~~~h~~~v~~~~~s~ 407 (407)
++|+....... +.. .......+|.+.|++|+|+|
T Consensus 277 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp EEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred EEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 99998632110 000 01122468999999999986
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.8e-37 Score=274.60 Aligned_cols=285 Identities=16% Similarity=0.165 Sum_probs=226.0
Q ss_pred ccCCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899 34 NLVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL 109 (407)
Q Consensus 34 ~~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~ 109 (407)
.+.-+..++.|.| .+++++.|+.+++|... ..............+|...|++++|+| ++++|++|+.|++|+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~---~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT---GDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLR 90 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEE---EETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCC---CCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEE
Confidence 3455677788876 37899999999999322 111111122344568999999999999 899999999999999
Q ss_pred EEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee
Q 046899 110 IWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK 189 (407)
Q Consensus 110 vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 189 (407)
+||+.+++....+.+|...+ .- +........+++++.|+.+++||+. ++.+..
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v-------~~-------------------~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDV-------MS-------------------VDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp EEETTTTEEEEEEECCSSCE-------EE-------------------EEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred EEECCCCCeeEEEccCCCcE-------EE-------------------EEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 99999887776666664331 11 1112223457889999999999986 467778
Q ss_pred EeecccCEEEEEECCCC-----CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899 190 YLGHEDTVEDVQFCPSS-----AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i 264 (407)
+.+|...|.+++|+|.. ...+++++.|+.|++||+++.+ ....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i 220 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASP-DGTLIASAGKDGEI 220 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECT-TSSEEEEEETTCEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeE
Confidence 88999999999999853 1489999999999999999877 6777889999999999999 99999999999999
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc--------cCCCcccC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG--------ELKYPIIH 336 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~--------~~~~~v~~ 336 (407)
++||++. ++++.++.. ...|.+++|+|++.++ ++++ ++.+++|++........+. .+...+.+
T Consensus 221 ~iwd~~~------~~~~~~~~~-~~~v~~~~~sp~~~~l-a~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 221 MLWNLAA------KKAMYTLSA-QDEVFSLAFSPNRYWL-AAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp EEEETTT------TEEEEEEEC-CSCEEEEEECSSSSEE-EEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred EEEECCC------CcEEEEecC-CCcEEEEEEcCCCCEE-EEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 9999998 788888875 4689999999999854 5665 5669999998765444332 23456777
Q ss_pred CCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 337 PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 337 ~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
++|||| +..|++|+.|++|+|||+.
T Consensus 292 ~~~spd------------------g~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 292 LAWSAD------------------GQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEECTT------------------SSEEEEEETTSCEEEEEEE
T ss_pred EEECCC------------------CCEEEEeecCceEEEEEEe
Confidence 888888 8999999999999999997
No 24
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-37 Score=281.96 Aligned_cols=284 Identities=15% Similarity=0.188 Sum_probs=209.8
Q ss_pred eEEEeeCCCceEEEEE-----eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899 76 KFKTIIHPGEVNRIRE-----LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAA 150 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~-----~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~ 150 (407)
...+.+|.+.|++++| ++.++++|+||+.|++|++||+.+.+..... + .. ...+..
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-----------~-~~-------~~~l~~ 74 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-----------G-IP-------HKALTG 74 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-----------E-EE-------EEEECC
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-----------c-cc-------cchhcc
Confidence 3345689999999999 6658899999999999999999765321100 0 00 001111
Q ss_pred CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
+...+..+........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||++.....
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~ 153 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF 153 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee
Confidence 22222222233334557889999999999999999999999999999999999999 89999999999999999843211
Q ss_pred ceeeecccCcceEEEEecCCCC----------CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC
Q 046899 231 AVKVEKAHNADIHCVDWNPHDV----------NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK 300 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~~~----------~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 300 (407)
.......|...|.+++|+| ++ .+|++++.||.|++||.+ ......+.+|...|.+++|+|++
T Consensus 154 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN-------FQIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp ECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT-------TEEEEEEECCSSCEEEEEECTTS
T ss_pred eeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC-------CceeEEEcCccccceEEEECCCC
Confidence 1111237889999999999 54 799999999999999954 47788899999999999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 301 SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
++| ++|+.|+.|++||+...........+...|.+++|+|+ +..+ +++.|+.|+|||+..
T Consensus 226 ~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~------------------~~~l-a~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 226 KYI-ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK------------------LQWV-AVGTDQGVKIFNLMT 285 (343)
T ss_dssp SEE-EEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSS------------------SCEE-EEEESSCEEEEESSS
T ss_pred CEE-EEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCC------------------CCEE-EEECCCCEEEEEeCC
Confidence 965 79999999999999654444333345567888888887 5444 456788999999873
Q ss_pred cccCC-------hHHHHHHHhhcccceeEeeccC
Q 046899 381 LIYRP-------EEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 381 ~~~~~-------~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
..... .........+|...|.+++|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 286 QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred CCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 21110 0000111237889999999986
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-37 Score=278.40 Aligned_cols=275 Identities=14% Similarity=0.199 Sum_probs=216.8
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC-----cccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN-----RHAVLGAADSHPDLDQSVVLWSIQDHVSALAA 150 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~ 150 (407)
...+.+|.+.|++++|+|.++++|+||+.|++|++||+..... ...+.+|.
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~------------------------ 65 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------------------------ 65 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS------------------------
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc------------------------
Confidence 3455689999999999996678999999999999999875432 12222222
Q ss_pred CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
..+...........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++. .
T Consensus 66 --~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-~-- 139 (319)
T 3frx_A 66 --HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-Q-- 139 (319)
T ss_dssp --SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-C--
T ss_pred --ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-C--
Confidence 222222233334568899999999999999999999999999999999999998 8999999999999999974 3
Q ss_pred ceeeecccCcceEEEEecCC-----CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE
Q 046899 231 AVKVEKAHNADIHCVDWNPH-----DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~-----~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~ 305 (407)
....+.+|...|.++.|.|. ++..+++|+.|+.|++||++. .+....+.+|...|.+++|+|++.+| +
T Consensus 140 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~~~h~~~v~~~~~sp~g~~l-~ 212 (319)
T 3frx_A 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADFIGHNSNINTLTASPDGTLI-A 212 (319)
T ss_dssp EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEECCCCSCEEEEEECTTSSEE-E
T ss_pred eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheeecCCCCcEEEEEEcCCCCEE-E
Confidence 46777899999999999983 244899999999999999998 78888999999999999999999955 7
Q ss_pred EeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC
Q 046899 306 SSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385 (407)
Q Consensus 306 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~ 385 (407)
+|+.|++|++||+.+.+.+..+.. ..+|.+++|+|+ +..+++++ +..+++|++.......
T Consensus 213 s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~------------------~~~la~~~-~~~i~v~~~~~~~~~~ 272 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN------------------RYWLAAAT-ATGIKVFSLDPQYLVD 272 (319)
T ss_dssp EEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSS------------------SSEEEEEE-TTEEEEEEETTEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCC------------------CCEEEEEc-CCCcEEEEeCcCeeee
Confidence 999999999999999887777765 457889999888 66666665 4569999986311100
Q ss_pred h--HHHHHHHhhcccceeEeeccC
Q 046899 386 E--EEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 386 ~--~~~~~~~~~h~~~v~~~~~s~ 407 (407)
. .+.......|...|.+++||+
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~sp 296 (319)
T 3frx_A 273 DLRPEFAGYSKAAEPHAVSLAWSA 296 (319)
T ss_dssp EECCCCTTCCGGGCCCEEEEEECT
T ss_pred ccCccccccccCcCcceeEEEECC
Confidence 0 001111235677899999986
No 26
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-36 Score=270.24 Aligned_cols=251 Identities=19% Similarity=0.248 Sum_probs=200.1
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC--CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ--PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
..+|.+.|++++|+| ++++||||+.|++|+|||+... +....+.+|... ++.+.
T Consensus 5 ~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~---------V~~v~-------------- 60 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP---------VWRVD-------------- 60 (297)
T ss_dssp CCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC---------EEEEE--------------
T ss_pred ccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC---------eEEEE--------------
Confidence 347999999999999 8999999999999999999753 444555555433 11111
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTPAV 232 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~ 232 (407)
+.+. .....+++++.|+.+++||..+++ .+..+.+|...|.+++|+|+ + .+|++++.|+.|++||+++......
T Consensus 61 ~s~~-~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 61 WAHP-KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp ECCG-GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred ecCC-CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceee
Confidence 0000 012457889999999999998764 55667789999999999997 5 7999999999999999987642224
Q ss_pred eeecccCcceEEEEecCCC------------CCEEEEEeCCCcEEEEeCCCCCCCCCCC----ceeeecCCCCCEEEEEE
Q 046899 233 KVEKAHNADIHCVDWNPHD------------VNLILTGSADNSIHMFDRRKLTSDGVGS----PIHKFEGHSAAVLCVQW 296 (407)
Q Consensus 233 ~~~~~~~~~v~~l~~~~~~------------~~~l~tg~~dg~i~vwd~~~~~~~~~~~----~~~~~~~h~~~v~~v~~ 296 (407)
..+.+|...|.+++|+|.. +++|++|+.|+.|++||++. .. ...++.+|...|.+++|
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~------~~~~~~~~~~l~~H~~~V~~v~~ 212 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS------DAQTYVLESTLEGHSDWVRDVAW 212 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET------TTTEEEEEEEECCCSSCEEEEEE
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC------CCceEEEEEEecCCCCceEEEEE
Confidence 5667899999999999931 57999999999999999987 44 56788999999999999
Q ss_pred cCCC--CCEEEEeeCCCeEEEEeCCCCCc---cccc--ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE
Q 046899 297 SPDK--SSVFGSSAEDGILNIWDHEKIGE---KQDY--GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM 369 (407)
Q Consensus 297 ~~~~--~~ll~s~~~d~~i~vwd~~~~~~---~~~~--~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 369 (407)
+|++ ..+||+++.|++|++||++.... ...+ ..+...|.+++|+|+ +..|++++.
T Consensus 213 sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------g~~las~~~ 274 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------------------GNVLALSGG 274 (297)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS------------------SCCEEEEET
T ss_pred CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC------------------CCEEEEEcC
Confidence 9996 33568999999999999987431 1122 456778888999998 889999999
Q ss_pred eeeEEEeecc
Q 046899 370 VKVLEIWRMI 379 (407)
Q Consensus 370 d~~i~iwd~~ 379 (407)
|++|+||+..
T Consensus 275 D~~v~lw~~~ 284 (297)
T 2pm7_B 275 DNKVTLWKEN 284 (297)
T ss_dssp TSCEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 9999999986
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-37 Score=276.23 Aligned_cols=291 Identities=15% Similarity=0.158 Sum_probs=210.9
Q ss_pred cCCCeeEEEEeec-ccccCccceEEEEeecccCcccCCcceeeEEE--ee-CCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 35 LVWPSLSCRWGPQ-LEQATYKNRQRLYLSEQFNEEARSPFVKKFKT--II-HPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 35 ~~~p~~s~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~-h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
+.-+..++.|.|. +++++.|+.+++|. .... ....... .+ |.+.|++++|+| ++++||+|+.|++|+|
T Consensus 13 h~~~v~~~~~s~~~las~~~D~~i~lw~---~~~~----~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~i 84 (330)
T 2hes_X 13 YKEKIWSFDFSQGILATGSTDRKIKLVS---VKYD----DFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSI 84 (330)
T ss_dssp CSSCEEEEEEETTEEEEEESSSCEEEEE---CSSS----CCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred CCCceeeeccCCCEEEEEcCCCEEEEEE---ecCC----CeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEE
Confidence 4456777888874 78999999999992 2211 1112222 23 999999999999 8899999999999999
Q ss_pred EeCcCCCC-------cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899 111 WDVEAQPN-------RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS 183 (407)
Q Consensus 111 wd~~~~~~-------~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 183 (407)
||+..... ...+.+| ...+..+........+++++.|+.+++||+..
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h--------------------------~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGH--------------------------ENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp EEC-------CCCEEEEEEC------------------------------CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred EEcccCcCccccceeEEEEcCC--------------------------CCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 99864321 1111222 22222222333345688899999999999843
Q ss_pred ----cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC--CCEEEE
Q 046899 184 ----IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD--VNLILT 257 (407)
Q Consensus 184 ----~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~t 257 (407)
.+.+..+.+|...|.+++|+|++ .+|++|+.|++|++||.+++...+...+.+|...|.+++|+| + +.+|++
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s 216 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCS 216 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEE
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEE
Confidence 24566788999999999999998 899999999999999998764235677889999999999999 6 678999
Q ss_pred EeCCCcEEEEeCCCCCCCCC--CCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC--ccc-ccccCC
Q 046899 258 GSADNSIHMFDRRKLTSDGV--GSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG--EKQ-DYGELK 331 (407)
Q Consensus 258 g~~dg~i~vwd~~~~~~~~~--~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~--~~~-~~~~~~ 331 (407)
|+.|+.|++||++....... ..+...+.. |...|.+++|++++ +|++++.||+|++||+..++ ... ...+|.
T Consensus 217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence 99999999999875211000 033445555 89999999999766 35799999999999987653 222 234566
Q ss_pred C-cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 332 Y-PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 332 ~-~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
. .|.+++|+|. ..+..|++++.|++|+|||+.
T Consensus 295 ~~~v~~v~~~~~----------------~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 295 VYEINVVKWLEL----------------NGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp TSCEEEEEEC---------------------CCEEEEETTSEEEEEEC-
T ss_pred cceEEEEEEecC----------------CCceEEEEecCCCcEEEEEec
Confidence 5 7888888772 016789999999999999986
No 28
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.7e-36 Score=272.17 Aligned_cols=272 Identities=19% Similarity=0.303 Sum_probs=217.7
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-----ccccCcCCCCCCC--------------CCcEEE
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-----HAVLGAADSHPDL--------------DQSVVL 138 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~--------------d~~i~~ 138 (407)
.+.||.+.|++|+|+|+++++||||+.||+|+|||+.+.+.. ..+.+|...+.+. |+.+++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 456899999999999976899999999999999999876532 3344554433222 899999
Q ss_pred Eeccccccccc--cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc-eeeEeecccCEEEEEECCCCC-cEEEEEe
Q 046899 139 WSIQDHVSALA--AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-RGKYLGHEDTVEDVQFCPSSA-QEFCSVG 214 (407)
Q Consensus 139 w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~-~~l~s~~ 214 (407)
|+......... .................+++++.|+.+++||...... .....+|...+.+++|++++. .++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 99887644322 2222333333444456788899999999999876544 334557899999999988753 4688999
Q ss_pred CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEE
Q 046899 215 DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCV 294 (407)
Q Consensus 215 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v 294 (407)
.|+.|++||+++++ ....+.+|...|++++|+| ++++|++|+.||.|++||++. .+++..+.. ...|.++
T Consensus 193 ~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~------~~~~~~~~~-~~~v~~~ 262 (340)
T 4aow_A 193 WDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE------GKHLYTLDG-GDIINAL 262 (340)
T ss_dssp TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEEEEC-SSCEEEE
T ss_pred CCCEEEEEECCCCc--eeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc------CceeeeecC-CceEEee
Confidence 99999999999887 6778889999999999999 999999999999999999998 788888875 4689999
Q ss_pred EEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc---------ccCCCcccCCCCcCcchhccccceeeeeEeeCccceee
Q 046899 295 QWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY---------GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV 365 (407)
Q Consensus 295 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~---------~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~ 365 (407)
+|+|++. ++ +++.|+.|++||++....+..+ ..|...|++++|+|| +..|+
T Consensus 263 ~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------------------g~~l~ 322 (340)
T 4aow_A 263 CFSPNRY-WL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD------------------GQTLF 322 (340)
T ss_dssp EECSSSS-EE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT------------------SSEEE
T ss_pred ecCCCCc-ee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC------------------CCEEE
Confidence 9999876 54 7778999999999876554433 356778888999888 88999
Q ss_pred eEEEeeeEEEeecc
Q 046899 366 CLTMVKVLEIWRMI 379 (407)
Q Consensus 366 ~~~~d~~i~iwd~~ 379 (407)
+|+.|++|+|||+.
T Consensus 323 sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 323 AGYTDNLVRVWQVT 336 (340)
T ss_dssp EEETTSCEEEEEEE
T ss_pred EEeCCCEEEEEeCC
Confidence 99999999999998
No 29
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-36 Score=277.46 Aligned_cols=317 Identities=16% Similarity=0.190 Sum_probs=233.0
Q ss_pred hhhhhhhccCceEEEee--eecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCC-------------ccee
Q 046899 14 DRYTQWKSLVPVLYDWL--ANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARS-------------PFVK 75 (407)
Q Consensus 14 ~~~~~w~~~~~~~y~~l--~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~ 75 (407)
+.+-.|.+..|...+.. ...++.-+...+.|.|+ +++++ ++.+++|... ..... ....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~---~g~~~~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 40 DYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS---DGSLVARLSDDSAANKDPENLN 115 (393)
T ss_dssp SCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETT---TCCEEEEECC------------
T ss_pred ceEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEec---CCCEEEEecCcccccccccccc
Confidence 34446666666544332 22345556778899885 66665 5678899332 11000 0000
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
......+...|++++|+| ++++|++|+.|++|++||+.+++....+.+|...+ +
T Consensus 116 ~~~~~~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v---------~---------------- 169 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI---------Y---------------- 169 (393)
T ss_dssp -----CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE---------E----------------
T ss_pred ccccCCCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCE---------E----------------
Confidence 001112344599999999 88999999999999999999877666665554321 1
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
.+........+++++.|+.+++||+.+++....+. +...+.+++|+| ++ .+|++|+.|+.|++||++++. ....
T Consensus 170 -~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~--~~~~ 244 (393)
T 1erj_A 170 -SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGF--LVER 244 (393)
T ss_dssp -EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCC--EEEE
T ss_pred -EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCc--EEEe
Confidence 11111223457889999999999999988877765 667899999999 55 899999999999999999877 3433
Q ss_pred e-------cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC------CCCCceeeecCCCCCEEEEEEcCCCC
Q 046899 235 E-------KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD------GVGSPIHKFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 235 ~-------~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~~~~~ 301 (407)
+ .+|...|.+++|+| ++++|++|+.||.|++||++..... ..+.+...+.+|...|.+++|+|++.
T Consensus 245 ~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 323 (393)
T 1erj_A 245 LDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323 (393)
T ss_dssp EC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred ecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC
Confidence 3 57899999999999 9999999999999999999763210 00345667889999999999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+| ++|+.|+.|++||+++++.+..+.+|..+|.+++|+++ ..+...+..+++|+.|++|+||++.
T Consensus 324 ~l-~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~------------~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 324 YI-LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG------------SSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EE-EEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC------------cCcCCCCCEEEEECCCCcEEECccc
Confidence 65 69999999999999999999999999999999888764 2222336789999999999999986
No 30
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-35 Score=266.04 Aligned_cols=282 Identities=18% Similarity=0.280 Sum_probs=229.3
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
.+.-+..++.|.|+ +++++.|+.+++|-. .. . .......+|...|.+++|+| ++++|++|+.||.|++
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~---~~---~--~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA---YD---G--KFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEET---TT---C--CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeC---CC---c--ccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEE
Confidence 44557788899884 889999999999921 11 1 12334457999999999999 8899999999999999
Q ss_pred EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899 111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY 190 (407)
Q Consensus 111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 190 (407)
||+.+++....+.+|... +.. .........+++++.++.+++||+.+++.+..+
T Consensus 92 wd~~~~~~~~~~~~~~~~-------v~~-------------------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNY-------VFC-------------------CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp EETTTCCEEEEEECCSSC-------EEE-------------------EEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EECCCCcEEEEEcCCCCC-------EEE-------------------EEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 999988766666555332 111 111222345788999999999999999999999
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
..|...|.+++|+|++ .+|++++.||.|++||+++++ .... ...+...+.+++|+| ++++|++++.||.|++||+
T Consensus 146 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred cCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence 9999999999999998 799999999999999999887 3443 345677899999999 8999999999999999999
Q ss_pred CCCCCCCCCCceeeecCCCCCEEE--EEEc-CCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLC--VQWS-PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~--v~~~-~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 346 (407)
++ ++++..+.+|...+.+ ..++ +++. ++++|+.||.|++||+++.+.+..+.+|..+|.+++|+|+
T Consensus 222 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~---- 290 (312)
T 4ery_A 222 SK------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT---- 290 (312)
T ss_dssp TT------TEEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS----
T ss_pred CC------CcEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc----
Confidence 98 8888999888765332 3444 5555 5579999999999999999999999999999999999988
Q ss_pred cccceeeeeEeeCccceeeeEE--EeeeEEEeecc
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLT--MVKVLEIWRMI 379 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~--~d~~i~iwd~~ 379 (407)
+..+++++ .|++|++|+..
T Consensus 291 --------------~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 291 --------------ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --------------SSEEEEEECTTTCCEEEEECC
T ss_pred --------------CCceEEEEccCCccEEEecCC
Confidence 78888887 58999999864
No 31
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-35 Score=269.68 Aligned_cols=264 Identities=19% Similarity=0.273 Sum_probs=214.3
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
.+.-+...+.|.|+ +++++.|+.+++|- .. . . ........|...|.+++|+| ++++|++|+.|+.|++
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd---~~--~-~--~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWD---SY--T-T--NKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSI 123 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEE---TT--T-C--CEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEE---CC--C-C--CcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 34557778899884 88999999999992 11 1 1 12333457999999999999 8899999999999999
Q ss_pred EeCcCCCC----cccccCcCCCCCC-------------CCCcEEEEecccccc--ccccCCCCCcccccCCCCCcccccc
Q 046899 111 WDVEAQPN----RHAVLGAADSHPD-------------LDQSVVLWSIQDHVS--ALAAEPGSAKSTASGGANSKNASKS 171 (407)
Q Consensus 111 wd~~~~~~----~~~~~~~~~~~~~-------------~d~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (407)
||+.+... ...+.+|...+.. .|++|++||+.++.. .+..+...+..+........+++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 99987542 2233444433221 189999999987644 3444555555555555556789999
Q ss_pred CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--ccCcceEEEEecC
Q 046899 172 GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AHNADIHCVDWNP 249 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~~~ 249 (407)
.|+.+++||+.+++.+..+.+|...|++++|+|++ ++|++|+.||+|++||+++++ ....+. .+...|.+++|+|
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECT
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECC
Confidence 99999999999999999999999999999999999 899999999999999999876 333332 3345799999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 250 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
++++|++|+.||.|++||++. ++.+..+.+|..+|.+++|+|++.+| +||+.|++|++||
T Consensus 281 -~g~~l~~g~~d~~i~vwd~~~------~~~~~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd 340 (340)
T 1got_B 281 -SGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340 (340)
T ss_dssp -TSSEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred -CCCEEEEECCCCeEEEEEccc------CcEeeEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence 999999999999999999998 88899999999999999999999966 7999999999997
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=274.33 Aligned_cols=270 Identities=14% Similarity=0.171 Sum_probs=201.9
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC--cccc-cC-cCCCCCCCCCcEEEEeccccccccccCC
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN--RHAV-LG-AADSHPDLDQSVVLWSIQDHVSALAAEP 152 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--~~~~-~~-~~~~~~~~d~~i~~w~~~~~~~~~~~~~ 152 (407)
..+.+|.++|++++|+| + +||+|+.|++|++||+..+.. ...+ .+ |..
T Consensus 8 ~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~------------------------- 59 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK------------------------- 59 (330)
T ss_dssp EEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCS-------------------------
T ss_pred eeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccC-------------------------
Confidence 34458999999999998 4 999999999999999986432 1111 11 211
Q ss_pred CCCcccccCCCCCccccccCCCCCCCCCCCC-------cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899 153 GSAKSTASGGANSKNASKSGGNGDKPLESPS-------IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR 225 (407)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 225 (407)
.+..+...+....+++++.|+.+++|+... .+.+..+.+|...|.+++|+|++ ++|++|+.|++|++||++
T Consensus 60 -~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 60 -AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETD 137 (330)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECC
T ss_pred -CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEecc
Confidence 111122222334578899999999998843 34566788999999999999998 899999999999999995
Q ss_pred CCC--CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC--CC
Q 046899 226 SGS--TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD--KS 301 (407)
Q Consensus 226 ~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~ 301 (407)
... ......+.+|...|.+++|+| ++.+|++|+.|+.|++||.+... .+++..+.+|...|.+++|+|+ +.
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred CCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCee
Confidence 432 124566789999999999999 89999999999999999987621 2678899999999999999998 44
Q ss_pred CEEEEeeCCCeEEEEeCCCCC--------ccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899 302 SVFGSSAEDGILNIWDHEKIG--------EKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV 372 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~~--------~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 372 (407)
.|++|+.|++|++||++... ....+.. |..+|++++|++ +..|++++.|++
T Consensus 213 -~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------------~~~l~s~~~dg~ 272 (330)
T 2hes_X 213 -RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-------------------NGLIASVGADGV 272 (330)
T ss_dssp -EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-------------------TSCEEEEETTSC
T ss_pred -EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-------------------CCEEEEEeCCCE
Confidence 45799999999999997642 2333444 777788877764 347999999999
Q ss_pred EEEeeccccccCChHH--HH-HHHhhccc-ceeEeeccC
Q 046899 373 LEIWRMIDLIYRPEEE--VL-AELDKFKS-HIFGCDKSC 407 (407)
Q Consensus 373 i~iwd~~~~~~~~~~~--~~-~~~~~h~~-~v~~~~~s~ 407 (407)
|+|||.. +++ ++ ..+.+|.. .|.+++|++
T Consensus 273 v~iw~~~------~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 273 LAVYEEV------DGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp EEEEEEE------TTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred EEEEEcC------CCceEEEeccccccccceEEEEEEec
Confidence 9999986 331 11 12357887 899999975
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=277.51 Aligned_cols=317 Identities=13% Similarity=0.175 Sum_probs=245.2
Q ss_pred eeecccCCCeeEEEEeec----ccccCccceEEEEeeccc-CcccCCcce-eeEEEe----------eCCCceEEEEEeC
Q 046899 30 LANHNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQF-NEEARSPFV-KKFKTI----------IHPGEVNRIRELP 93 (407)
Q Consensus 30 l~~~~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~-~~~~~~~~~-~~~~~~----------~h~~~v~~l~~~~ 93 (407)
+..+...-+..++.|.|+ +++++.++.+++|..... ......-.. ...... +|.+.|++++|+|
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 344444457778899874 778999999999933100 111100000 111111 2688999999999
Q ss_pred CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecccccccccc--CCCC---
Q 046899 94 QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSALAA--EPGS--- 154 (407)
Q Consensus 94 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~~~--~~~~--- 154 (407)
++++|++|+.||.|++|| .++.....+..|...+... |+.+++|++.++...... ....
T Consensus 119 -~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 119 -DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp -TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred -CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 889999999999999999 4455555555554433221 899999999876432221 1111
Q ss_pred ------------CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899 155 ------------AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW 222 (407)
Q Consensus 155 ------------~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 222 (407)
+..+.... +..+++++.++.+++||...++.+..+..|...|.+++|+|++ .+|++++.|+.|++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVD-DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIW 274 (425)
T ss_dssp ---------CCCBSCCEEEE-TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred eeeccccCCcceeeEEEEcC-CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEE
Confidence 11111111 2457889999999999999999999999999999999999998 799999999999999
Q ss_pred EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 302 (407)
|+++++ ....+..|...|.+++|+| ++ ++++++.||.|++||+++ ++++..+..|...|.+++|+|++.+
T Consensus 275 d~~~~~--~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~s~~~~~ 344 (425)
T 1r5m_A 275 HGGNGN--SQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ------NTLLALSIVDGVPIFAGRISQDGQK 344 (425)
T ss_dssp CSSSBS--CSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTT------TEEEEEEECTTCCEEEEEECTTSSE
T ss_pred ECCCCc--cceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCC------CcEeEecccCCccEEEEEEcCCCCE
Confidence 999887 5677778999999999999 77 999999999999999998 8899999999999999999999995
Q ss_pred EEEEeeCCCeEEEEeCCCCC--------------------cccccccCCC--cccCCCCcCcchhccccceeeeeEeeCc
Q 046899 303 VFGSSAEDGILNIWDHEKIG--------------------EKQDYGELKY--PIIHPAYSSDMLDIETKLLTSIGMHLIH 360 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~~~~--------------------~~~~~~~~~~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~ 360 (407)
| ++++.||.|++||+++.+ .+..+..+.. +|++++|+|+
T Consensus 345 l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------ 405 (425)
T 1r5m_A 345 Y-AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA------------------ 405 (425)
T ss_dssp E-EEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT------------------
T ss_pred E-EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC------------------
Confidence 5 799999999999999877 6777888866 8999999888
Q ss_pred cceeeeEEEeeeEEEeecc
Q 046899 361 GRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 361 ~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++++.|+.|+|||+.
T Consensus 406 ~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp SSEEEEEESSSCCEEEECC
T ss_pred CceEEEEecCceEEEEeec
Confidence 7899999999999999985
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-35 Score=268.27 Aligned_cols=284 Identities=16% Similarity=0.141 Sum_probs=214.5
Q ss_pred cCCCeeEEEE-----ee----cccccCccceEEEEeecccCcccCC--cceeeEEEeeCCCceEEEEEeCCCCeEEEEee
Q 046899 35 LVWPSLSCRW-----GP----QLEQATYKNRQRLYLSEQFNEEARS--PFVKKFKTIIHPGEVNRIRELPQNSKIVATHT 103 (407)
Q Consensus 35 ~~~p~~s~~~-----~~----~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~ 103 (407)
+.-+..++.| .| .+++++.|+.+++|-. ...... .......+.+|...|++++|+| ++.+|++|+
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~---~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s 95 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL---YEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSS 95 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEE---CSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEE
T ss_pred chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEEC---CcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEc
Confidence 3445666666 33 4889999999999932 211111 1122344568999999999999 888999999
Q ss_pred CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899 104 DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS 183 (407)
Q Consensus 104 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 183 (407)
.|++|++||+.+++....+.+|...+ ..+........+++++.|+.+++||+..
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v--------------------------~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEV--------------------------YSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCE--------------------------EEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcE--------------------------EEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 99999999999887766666654331 1111222234578888999999999873
Q ss_pred cCceeeEe---ecccCEEEEEECCCCC---------cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899 184 IGARGKYL---GHEDTVEDVQFCPSSA---------QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 184 ~~~~~~~~---~~~~~v~~l~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
. ...... +|...|.+++|+|++. .+|++++.|+.|++||.+ .. ....+..|...|.+++|+| +
T Consensus 150 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~~v~~~~~s~-~ 224 (343)
T 2xzm_R 150 E-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHESNVNHLSISP-N 224 (343)
T ss_dssp C-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSSCEEEEEECT-T
T ss_pred C-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCccccceEEEECC-C
Confidence 3 222222 6888999999999862 589999999999999943 33 4667789999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc--ccc-
Q 046899 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ--DYG- 328 (407)
Q Consensus 252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~--~~~- 328 (407)
+++|++|+.||.|++||++.. ..+...+. +...|.+++|+|++. ++ +++.|+.|++||+.+.+... .+.
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~-----~~~~~~~~-~~~~v~~v~~sp~~~-~l-a~~~d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNL-----TYPQREFD-AGSTINQIAFNPKLQ-WV-AVGTDQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCC-----SSCSEEEE-CSSCEEEEEECSSSC-EE-EEEESSCEEEEESSSCCSCSEEECCC
T ss_pred CCEEEEEcCCCeEEEEECCCC-----cccceeec-CCCcEEEEEECCCCC-EE-EEECCCCEEEEEeCCCCCCceEEeec
Confidence 999999999999999999542 34444553 456799999999987 44 45568899999998765443 332
Q ss_pred ----------cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 329 ----------ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 329 ----------~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+|...+++++|+|+ +..|++|+.||+|++|++.
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~------------------g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNAL------------------GKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSS------------------SCCEEEEETTSEEEEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCC------------------CCeEEEecCCceEEEEEEE
Confidence 56677888888888 8899999999999999986
No 35
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-36 Score=284.04 Aligned_cols=303 Identities=10% Similarity=0.058 Sum_probs=199.7
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-----CCeEEEEeeCCCcEEEEeCcCCCCcccc
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-----NSKIVATHTDSPDVLIWDVEAQPNRHAV 122 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~~l~tg~~dg~i~vwd~~~~~~~~~~ 122 (407)
+++++.|+.++||- +.... ..........+|.+.|++|+|+|. ++.+||+|+.||+|++||+.++......
T Consensus 176 laS~s~D~tI~iWd---~~~~~-~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~ 251 (524)
T 2j04_B 176 FDKEKHSSCIQIFK---MNTST-LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV 251 (524)
T ss_dssp ------CEEEEEEE---EETTT-CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred hccCCCCceEEEEE---ccCCC-CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence 35677889999993 22111 111112234467899999999994 2579999999999999999866432100
Q ss_pred cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-ceeeEeecccCEEEE-
Q 046899 123 LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-ARGKYLGHEDTVEDV- 200 (407)
Q Consensus 123 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~v~~l- 200 (407)
. ..+......+..+...+..+.... ...+++++.||+|++||+.++. +...+.+|...|.+|
T Consensus 252 ~---------------~~~~~p~~~l~~h~~~v~sv~~s~-~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 252 F---------------KMCEKPSLTLSLADSLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp E---------------ECCCSCSEEECCTTTCEEEEEESS-SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred c---------------eeecCceEEEEcCCCCEEEEEecC-CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 0 000000001111112221111111 1358899999999999998764 455688999999999
Q ss_pred -EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899 201 -QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV 277 (407)
Q Consensus 201 -~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~ 277 (407)
+|+|++..+|++|+.|++|++||+++++ ....+.+|.. .|.+++|+| ++..+++++.|+.|++||++.
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~------ 386 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA------ 386 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC------
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCC--cccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc------
Confidence 5677654689999999999999999876 4445556643 588999999 888999999999999999998
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC-----CCcccCCCCcCcchhcccccee
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL-----KYPIIHPAYSSDMLDIETKLLT 352 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~~~~~~~~ 352 (407)
+.++.++.+|...|++|+|+|+++.| ++|+.|++|++||+... .+...... ...++.++|||+
T Consensus 387 ~~~~~~l~gH~~~V~sva~Sp~g~~l-~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~---------- 454 (524)
T 2j04_B 387 AFAVHPLVSRETTITAIGVSRLHPMV-LAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIK---------- 454 (524)
T ss_dssp TTCCEEEEECSSCEEEEECCSSCCBC-EEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSS----------
T ss_pred cccceeeecCCCceEEEEeCCCCCeE-EEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCC----------
Confidence 78888899999999999999999966 69999999999998753 33332211 124668888887
Q ss_pred eeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 353 SIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 353 ~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..+ ..+..+++|+.. ..+.++..+.+|...|++|+|||
T Consensus 455 --------g~~~---~~~~~~~~~~~~-----~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 455 --------DDKY---RIDSSYEVYPLT-----VNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp --------SCEE---EECCCCCCCC------------------CCCSCCCEEECC
T ss_pred --------CCeE---EccCCceecccc-----cCCcceeeecCCCceEEEEECCC
Confidence 3322 122233344331 14788999999999999999996
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.1e-35 Score=268.97 Aligned_cols=269 Identities=20% Similarity=0.264 Sum_probs=210.5
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
.+.-+..++.|.|+ +++++.|+.+++|-. . .........+|...|.+++|+| ++++|++|+.|+.|++
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~---~-----~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA---L-----TSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSI 134 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEET---T-----TTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEE
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEEC---C-----CCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEE
Confidence 34557888899884 889999999999921 1 1122344457999999999999 8999999999999999
Q ss_pred EeCcCCC-------CcccccCcCCCCCCC---------------CCcEEEEeccccccccc-------cCCCCCcccccC
Q 046899 111 WDVEAQP-------NRHAVLGAADSHPDL---------------DQSVVLWSIQDHVSALA-------AEPGSAKSTASG 161 (407)
Q Consensus 111 wd~~~~~-------~~~~~~~~~~~~~~~---------------d~~i~~w~~~~~~~~~~-------~~~~~~~~~~~~ 161 (407)
||+.+.. ....+.+|...+... |+++++||+.++..... .+...+......
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997532 223344554433211 89999999987754322 222223333332
Q ss_pred C-CCCccccccCCCCCCCCCCC-CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-
Q 046899 162 G-ANSKNASKSGGNGDKPLESP-SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH- 238 (407)
Q Consensus 162 ~-~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~- 238 (407)
. ....+++++.|+.+++||+. ..+.+..+.+|...|++++|+|++ .+|++|+.||+|++||++++. ....+..+
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH--QLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE--EEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc--EEEEecccc
Confidence 2 34568889999999999997 557788899999999999999999 899999999999999999887 34444332
Q ss_pred ------CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee----cCCCCCEEEEEEcCCCCCEEEEee
Q 046899 239 ------NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF----EGHSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 239 ------~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
...|.+++|+| ++++|++|+.||.|++||+.. ++.+..+ .+|...|++++|+|+|.+| +||+
T Consensus 292 ~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~------~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs 363 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLL------AEMVLNLGTLQNSHEGRISCLGLSSDGSAL-CTGS 363 (380)
T ss_dssp SSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTT------CCEEEEECCSCSSCCCCCCEEEECSSSSEE-EEEC
T ss_pred cccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCC------CceEEEEecccCCCCCceEEEEECCCCCEE-EEee
Confidence 23489999999 999999999999999999988 7777766 6799999999999999965 7999
Q ss_pred CCCeEEEEeCCCCC
Q 046899 309 EDGILNIWDHEKIG 322 (407)
Q Consensus 309 ~d~~i~vwd~~~~~ 322 (407)
.|++|++|++...+
T Consensus 364 ~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 364 WDKNLKIWAFSGHR 377 (380)
T ss_dssp TTSCEEEEECCSSS
T ss_pred CCCCEEEEecCCCc
Confidence 99999999998654
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.5e-35 Score=262.97 Aligned_cols=272 Identities=15% Similarity=0.232 Sum_probs=221.4
Q ss_pred eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccccc-----CcCCCC------CCC--------CC
Q 046899 74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL-----GAADSH------PDL--------DQ 134 (407)
Q Consensus 74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-----~~~~~~------~~~--------d~ 134 (407)
.......+|.+.|++++|+| ++++|++++ ||.|++||+.++.....+. .+...+ ++. ++
T Consensus 42 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 119 (337)
T 1gxr_A 42 ARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp EEEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred cccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 44556668999999999999 889999999 9999999998765433322 222211 111 89
Q ss_pred cEEEEecccccc----ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEE
Q 046899 135 SVVLWSIQDHVS----ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEF 210 (407)
Q Consensus 135 ~i~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 210 (407)
.+.+|++.+... .+..+...+..+........+++++.++.+++||+.+++.+..+..|...|.+++|+|++ .+|
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 198 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG-TKL 198 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEE
T ss_pred cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC-CEE
Confidence 999999987642 233344444444444455678889999999999999999999999999999999999998 899
Q ss_pred EEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC
Q 046899 211 CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA 290 (407)
Q Consensus 211 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~ 290 (407)
++++.||.|++||+++++ ..... .+...+.+++|+| +++++++++.||.|++||++. .+ ...+..|...
T Consensus 199 ~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~------~~-~~~~~~~~~~ 267 (337)
T 1gxr_A 199 WTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK------PD-KYQLHLHESC 267 (337)
T ss_dssp EEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS------SC-EEEECCCSSC
T ss_pred EEEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC------CC-eEEEcCCccc
Confidence 999999999999999877 34443 5788999999999 899999999999999999997 43 4577889999
Q ss_pred EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe
Q 046899 291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV 370 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d 370 (407)
|.+++|+|+++++ ++++.||.|++||+.+++.+.. ..+..++++++|+|+ +..|++++.|
T Consensus 268 v~~~~~~~~~~~l-~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~------------------~~~l~~~~~d 327 (337)
T 1gxr_A 268 VLSLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVD------------------DKYIVTGSGD 327 (337)
T ss_dssp EEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTT------------------SCEEEEEETT
T ss_pred eeEEEECCCCCEE-EEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCC------------------CCEEEEecCC
Confidence 9999999999965 6999999999999998776633 456778888999888 8899999999
Q ss_pred eeEEEeecc
Q 046899 371 KVLEIWRMI 379 (407)
Q Consensus 371 ~~i~iwd~~ 379 (407)
+.|++|++.
T Consensus 328 g~i~iw~~~ 336 (337)
T 1gxr_A 328 KKATVYEVI 336 (337)
T ss_dssp SCEEEEEEE
T ss_pred CeEEEEEEe
Confidence 999999974
No 38
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-36 Score=302.96 Aligned_cols=339 Identities=13% Similarity=0.131 Sum_probs=237.5
Q ss_pred eeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCC
Q 046899 29 WLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDS 105 (407)
Q Consensus 29 ~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d 105 (407)
....+.+.-+..++.|.|+ +++++.|+.+++| +...........|...|++|+|+| +++|++++.|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw---------~~~~~~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D 78 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIY---------GQQQVEVVIKLEDRSAIKEMRFVK--GIYLVVINAK 78 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEE---------CSTTCEEEEECSSCCCEEEEEEET--TTEEEEEETT
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEE---------eCCCcEEEEEcCCCCCEEEEEEcC--CCEEEEEECc
Confidence 3444566778888899884 8899999999999 222233444557899999999999 5599999999
Q ss_pred CcEEEEeCcCCCCcccccCcC-----CCCCCC--------CCcEEEEeccccccc-------------cccCCCCCcccc
Q 046899 106 PDVLIWDVEAQPNRHAVLGAA-----DSHPDL--------DQSVVLWSIQDHVSA-------------LAAEPGSAKSTA 159 (407)
Q Consensus 106 g~i~vwd~~~~~~~~~~~~~~-----~~~~~~--------d~~i~~w~~~~~~~~-------------~~~~~~~~~~~~ 159 (407)
++|++||+.+++....+..+. ...++. |++|++||+.+.... ...+...+..+.
T Consensus 79 ~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158 (902)
T ss_dssp CEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred CeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence 999999999887665543211 111222 899999999876431 122333443343
Q ss_pred cCCC-CCccccccCCCCCCCCCCCCcCceeeEeec------------------ccCEEEEEECCCCCcEEEEEeCCCcEE
Q 046899 160 SGGA-NSKNASKSGGNGDKPLESPSIGARGKYLGH------------------EDTVEDVQFCPSSAQEFCSVGDDSCLI 220 (407)
Q Consensus 160 ~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~~l~s~~~dg~i~ 220 (407)
.... ...+++++.++.+ +||+.+++.+..+..| ...|++++|+|++ .+|++|+.||.|+
T Consensus 159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLV 236 (902)
T ss_dssp EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEE
T ss_pred EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEE
Confidence 3332 2467889999999 9999999888877655 5789999999998 8999999999999
Q ss_pred EEEcCCCCCCcee--ee---c-------------ccCcceEEEEecCC---C-CCEEEEEeCC-----CcEEEEe-----
Q 046899 221 LWDARSGSTPAVK--VE---K-------------AHNADIHCVDWNPH---D-VNLILTGSAD-----NSIHMFD----- 268 (407)
Q Consensus 221 iwd~~~~~~~~~~--~~---~-------------~~~~~v~~l~~~~~---~-~~~l~tg~~d-----g~i~vwd----- 268 (407)
+||+++++ .+. .+ . .|...|++++|++. + +.++++|+.| ..+.+|+
T Consensus 237 lWd~~~g~--~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~ 314 (902)
T 2oaj_A 237 FWDANSGH--MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314 (902)
T ss_dssp EEETTTCC--EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred EEECCCCc--EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence 99999876 332 12 1 13457889999531 2 2456666544 2455555
Q ss_pred ------------------------------------------------------------------CCCCCCCCCCCcee
Q 046899 269 ------------------------------------------------------------------RRKLTSDGVGSPIH 282 (407)
Q Consensus 269 ------------------------------------------------------------------~~~~~~~~~~~~~~ 282 (407)
+.+ +.+..
T Consensus 315 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~------g~~~~ 388 (902)
T 2oaj_A 315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS------GIFTD 388 (902)
T ss_dssp CGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT------CCEEC
T ss_pred CccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC------CCccc
Confidence 321 11110
Q ss_pred -----------------------------------------eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 283 -----------------------------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 283 -----------------------------------------~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
.+.+|...+.+++|+|+++ +|+||+.|++|++||+..+
T Consensus 389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g 467 (902)
T 2oaj_A 389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHG 467 (902)
T ss_dssp CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCC
T ss_pred ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCc
Confidence 1223333444455678888 4589999999999999886
Q ss_pred Cccc--cc---------ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC-----
Q 046899 322 GEKQ--DY---------GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP----- 385 (407)
Q Consensus 322 ~~~~--~~---------~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~----- 385 (407)
.... .+ .+|...|++++|||| +..|++|+.|++|+|||+.......
T Consensus 468 ~~~~~~~~~~~l~~~~~~~h~~~V~svafspd------------------g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 468 DIQDNASFEVNLSRTLNKAKELAVDKISFAAE------------------TLELAVSIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT------------------TTEEEEEETTSCEEEEEEEECCC-------
T ss_pred cccCCceEEeechhhcCCCCCCceeEEEecCC------------------CCeEEEEecCcEEEEEEecCccccCccccC
Confidence 4221 11 167889999999999 8999999999999999997431100
Q ss_pred --h--------------------------------HHHHHHHhhcccceeEeeccC
Q 046899 386 --E--------------------------------EEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 386 --~--------------------------------~~~~~~~~~h~~~v~~~~~s~ 407 (407)
. .+++..+.+|.+.|++|+||+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp 585 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN 585 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB
T ss_pred CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC
Confidence 0 023556788999999999996
No 39
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-36 Score=280.21 Aligned_cols=295 Identities=16% Similarity=0.204 Sum_probs=240.6
Q ss_pred eeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeC----cCCCC------cccccC----------cCCCC----
Q 046899 75 KKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDV----EAQPN------RHAVLG----------AADSH---- 129 (407)
Q Consensus 75 ~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~----~~~~~------~~~~~~----------~~~~~---- 129 (407)
.......|.+.|++++|+| +++ +||+|+.||.|++||+ .++.. ...+.. |...+
T Consensus 37 ~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp EECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred hheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence 3445557889999999999 777 9999999999999999 76662 222211 12111
Q ss_pred --CCC--------CCcEEEEeccccc-cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC--
Q 046899 130 --PDL--------DQSVVLWSIQDHV-SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT-- 196 (407)
Q Consensus 130 --~~~--------d~~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-- 196 (407)
++. |+.+.+|+..... ..+..+...+..+........+++++.++.+++||+.+++.+..+..+...
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 111 8999999954432 234445555555555555667889999999999999999998888877776
Q ss_pred -------------EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899 197 -------------VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS 263 (407)
Q Consensus 197 -------------v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~ 263 (407)
+.+++|+|++ .+++++.||.|++||+++++ ....+..|...|.+++|+| ++++|++++.||.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFND-TNKLLLSASDDGT 270 (425)
T ss_dssp ----------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred ceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECC-CCCEEEEEcCCCE
Confidence 9999999976 68899999999999999887 5667778999999999999 8899999999999
Q ss_pred EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcc
Q 046899 264 IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDM 343 (407)
Q Consensus 264 i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 343 (407)
|++||++. ++++..+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+..+..++++++|+|+
T Consensus 271 i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~- 341 (425)
T 1r5m_A 271 LRIWHGGN------GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD- 341 (425)
T ss_dssp EEEECSSS------BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT-
T ss_pred EEEEECCC------CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC-
Confidence 99999998 78899999999999999999999 4579999999999999999888888889999999999988
Q ss_pred hhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH--------------------HHHHHhhccc--cee
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE--------------------VLAELDKFKS--HIF 401 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~~~h~~--~v~ 401 (407)
+..|++++.|+.|+|||+. .++ ++..+.+|.. .|+
T Consensus 342 -----------------~~~l~~~~~dg~i~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 398 (425)
T 1r5m_A 342 -----------------GQKYAVAFMDGQVNVYDLK------KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIF 398 (425)
T ss_dssp -----------------SSEEEEEETTSCEEEEECH------HHHC--------------CEECCEEEEECCTTCCCCEE
T ss_pred -----------------CCEEEEEECCCeEEEEECC------CCccceeeeecccccccCcccchhhhhhcCcccCCceE
Confidence 8899999999999999998 666 6778889977 999
Q ss_pred EeeccC
Q 046899 402 GCDKSC 407 (407)
Q Consensus 402 ~~~~s~ 407 (407)
+++|++
T Consensus 399 ~~~~s~ 404 (425)
T 1r5m_A 399 DLSWNC 404 (425)
T ss_dssp EEEECT
T ss_pred EEEccC
Confidence 999985
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-34 Score=267.66 Aligned_cols=289 Identities=20% Similarity=0.316 Sum_probs=227.5
Q ss_pred CCCeeEEEEeec-ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 36 VWPSLSCRWGPQ-LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 36 ~~p~~s~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
+.....++|.+. +++++.++.+++|- .. ...........|.+.|++++|+| ++++|++|+.||.|++||+.
T Consensus 93 ~~~~~~~~~s~~~l~~~~~d~~v~lw~---~~----~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 93 DYYLNLLDWSNLNVVAVALERNVYVWN---AD----SGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCBCEEECTTSEEEEEETTEEEEEE---TT----TCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred CceEEEEeecCCCEEEEECCCeEEEee---CC----CCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECc
Confidence 344556788764 77888899999992 21 11222333345899999999999 88999999999999999999
Q ss_pred CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC-CcCceeeEeec
Q 046899 115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP-SIGARGKYLGH 193 (407)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~ 193 (407)
+++....+.+|...+ .-.... ...+++++.++.+++||+. ....+..+.+|
T Consensus 165 ~~~~~~~~~~~~~~v-------~~~~~~---------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 165 SQTKLRTMAGHQARV-------GCLSWN---------------------RHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp TCCEEEEECCCSSCE-------EEEEEE---------------------TTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CCeEEEEecCCCCce-------EEEEEC---------------------CCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 887776666554331 111111 1357788899999999998 56667888899
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe--CCCcEEEEeCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS--ADNSIHMFDRRK 271 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~--~dg~i~vwd~~~ 271 (407)
...|.+++|+|++ .+|++|+.|+.|++||++++. ....+..|...|.+++|+|.+..++++|+ .|+.|++||+++
T Consensus 217 ~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 217 SSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred CCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 9999999999988 899999999999999999877 67777889999999999996667888866 799999999998
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE-eeCCCeEEEEeCCCCCccc--ccccCCCcccCCCCcCcchhccc
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS-SAEDGILNIWDHEKIGEKQ--DYGELKYPIIHPAYSSDMLDIET 348 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~~~~ 348 (407)
++++..+. +...|.+++|+|++++++++ |+.||.|++||+.+.+... .+.+|..+|++++|+||
T Consensus 294 ------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d------ 360 (401)
T 4aez_A 294 ------GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD------ 360 (401)
T ss_dssp ------CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT------
T ss_pred ------CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC------
Confidence 88888886 66789999999999976533 4489999999999854443 46688999999999998
Q ss_pred cceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
+..|++++.|+.|+|||+. +++++....
T Consensus 361 ------------g~~l~s~~~dg~i~iw~~~------~~~~~~~~~ 388 (401)
T 4aez_A 361 ------------GRILSTAASDENLKFWRVY------DGDHVKRPI 388 (401)
T ss_dssp ------------SSEEEEECTTSEEEEEECC------C--------
T ss_pred ------------CCEEEEEeCCCcEEEEECC------CCccccccc
Confidence 8899999999999999998 666665543
No 41
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.2e-36 Score=268.22 Aligned_cols=251 Identities=19% Similarity=0.265 Sum_probs=195.3
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
..+|.+.|++++|+| ++++||||+.|++|+|||+.++. ....+.+|... ++.
T Consensus 9 ~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~---------V~~---------------- 62 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP---------VWQ---------------- 62 (316)
T ss_dssp -----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSC---------EEE----------------
T ss_pred cccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCcc---------EEE----------------
Confidence 347999999999999 88999999999999999998653 23334444332 111
Q ss_pred ccccCC--CCCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCC-
Q 046899 157 STASGG--ANSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGST- 229 (407)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~- 229 (407)
+.... ....+++++.|+.+++||..+++ ....+.+|...|.+++|+|+ + .+|++|+.|+.|++||++....
T Consensus 63 -v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 63 -VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp -EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE
T ss_pred -EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc
Confidence 11110 12458889999999999998764 55667789999999999998 5 7899999999999999987641
Q ss_pred CceeeecccCcceEEEEecCCC-----------------CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE
Q 046899 230 PAVKVEKAHNADIHCVDWNPHD-----------------VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL 292 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~-----------------~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~ 292 (407)
.....+.+|...|.+++|+| + +.+|++|+.|+.|++||++.... .+++.++.+|...|+
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l~~h~~~V~ 216 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKLEAHSDWVR 216 (316)
T ss_dssp EECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECCBCCSSCEE
T ss_pred ceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc---cceeeecccCCCceE
Confidence 12345568999999999999 4 46899999999999999975110 146778899999999
Q ss_pred EEEEcCCC---CCEEEEeeCCCeEEEEeCCCCC----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceee
Q 046899 293 CVQWSPDK---SSVFGSSAEDGILNIWDHEKIG----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV 365 (407)
Q Consensus 293 ~v~~~~~~---~~ll~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~ 365 (407)
+++|+|++ ..+||+++.|++|++||+.... ....+..+..+|++++|+|+ +..|+
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~------------------g~~la 278 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT------------------ANILA 278 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT------------------TCCEE
T ss_pred EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC------------------CCEEE
Confidence 99999986 2356899999999999998632 12334567888999999998 88999
Q ss_pred eEEEeeeEEEeecc
Q 046899 366 CLTMVKVLEIWRMI 379 (407)
Q Consensus 366 ~~~~d~~i~iwd~~ 379 (407)
+++.|++|+||+..
T Consensus 279 s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 279 VSGGDNKVTLWKES 292 (316)
T ss_dssp EEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEEC
Confidence 99999999999986
No 42
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-35 Score=271.06 Aligned_cols=305 Identities=15% Similarity=0.189 Sum_probs=227.8
Q ss_pred CceEEEe--eeecccCCCeeEEEEeec-------ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC
Q 046899 23 VPVLYDW--LANHNLVWPSLSCRWGPQ-------LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP 93 (407)
Q Consensus 23 ~~~~y~~--l~~~~~~~p~~s~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 93 (407)
.|+-|.. .....+.-|...+.|.|. ++.++.++.+++|. .................|.+.|++++|+|
T Consensus 3 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 3 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYE---CHSQGEIRLLQSYVDADADENFYTCAWTY 79 (366)
T ss_dssp --CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEE---ECGGGCEEEEEEEECSCTTCCEEEEEEEE
T ss_pred ceeEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEE---cCCCcEEEeeeeccccCCCCcEEEEEecc
Confidence 4555554 233345668888999873 56666677899993 22222211222222223789999999999
Q ss_pred CC---CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC-CCCcccc
Q 046899 94 QN---SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG-ANSKNAS 169 (407)
Q Consensus 94 ~~---~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 169 (407)
.. +++|++|+.||.|++||+.+++....+.+|...+ . .+.... ....+++
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i-------~-------------------~~~~~~~~~~~l~s 133 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI-------N-------------------ELKFHPRDPNLLLS 133 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCE-------E-------------------EEEECSSCTTEEEE
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcE-------E-------------------EEEECCCCCCEEEE
Confidence 32 6799999999999999999887666655543321 1 111111 2345788
Q ss_pred ccCCCCCCCCCCCCcCceeeE---eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC----------------
Q 046899 170 KSGGNGDKPLESPSIGARGKY---LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP---------------- 230 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------- 230 (407)
++.++.+++||+.+++.+..+ .+|...|.+++|+|++ .+|++++.||.|++||+++++..
T Consensus 134 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 134 VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp EETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred EeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 889999999999999888888 6799999999999998 89999999999999999876410
Q ss_pred ----------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC--------CCCCCceeeecCCCCCEE
Q 046899 231 ----------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS--------DGVGSPIHKFEGHSAAVL 292 (407)
Q Consensus 231 ----------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~h~~~v~ 292 (407)
.......|...|.+++|+ ++++++++.||.|++||++.... ......+..+..|...|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 289 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW 289 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS
T ss_pred cccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEE
Confidence 111223389999999998 46999999999999999987321 000133778888999999
Q ss_pred EEEEcCC--CCCEEEEeeCCCeEEEEeCCCCCccc----ccccC--CCcccCCCCcCcchhccccceeeeeEeeCcccee
Q 046899 293 CVQWSPD--KSSVFGSSAEDGILNIWDHEKIGEKQ----DYGEL--KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL 364 (407)
Q Consensus 293 ~v~~~~~--~~~ll~s~~~d~~i~vwd~~~~~~~~----~~~~~--~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i 364 (407)
+++|+|+ +.+ |++|+.||.|++||+.+++... .+..| ..+|++++|+|+ +..|
T Consensus 290 ~~~~s~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~l 350 (366)
T 3k26_A 290 YMRFSMDFWQKM-LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD------------------SSIL 350 (366)
T ss_dssp CCCCEECTTSSE-EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT------------------SSEE
T ss_pred EEEEcCCCCCcE-EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC------------------CCeE
Confidence 9999999 885 5799999999999999876544 56666 688999999998 8899
Q ss_pred eeEEEeeeEEEeecc
Q 046899 365 VCLTMVKVLEIWRMI 379 (407)
Q Consensus 365 ~~~~~d~~i~iwd~~ 379 (407)
++++.|+.|+|||+.
T Consensus 351 ~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 351 IAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEeCCCEEEEEEec
Confidence 999999999999985
No 43
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-36 Score=278.81 Aligned_cols=274 Identities=15% Similarity=0.296 Sum_probs=220.4
Q ss_pred CCCceEEEEEeCCCCeEEEEe----------eCCCcEEEEeCcCCCC---cccccCcCCCC------CCC--------CC
Q 046899 82 HPGEVNRIRELPQNSKIVATH----------TDSPDVLIWDVEAQPN---RHAVLGAADSH------PDL--------DQ 134 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg----------~~dg~i~vwd~~~~~~---~~~~~~~~~~~------~~~--------d~ 134 (407)
+...|.+++|+|+...+|++| +.|+.|++||+.++.. ...+ .+...+ ++. |+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 455789999999434599999 8999999999987642 2222 222211 111 89
Q ss_pred cEEEEeccc------cccccccCCCCCcccccCCC-CCccccccCCCCCCCCCCCCcC------ceee---EeecccCEE
Q 046899 135 SVVLWSIQD------HVSALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESPSIG------ARGK---YLGHEDTVE 198 (407)
Q Consensus 135 ~i~~w~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~------~~~~---~~~~~~~v~ 198 (407)
.+++|++.. ....+..+...+..+..... ...+++++.++.+++||+.+.+ .... +..|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 12344455555555555554 5678899999999999998876 3322 357899999
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc------CcceEEEEecCCCCCEEEEEeCCC---cEEEEeC
Q 046899 199 DVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH------NADIHCVDWNPHDVNLILTGSADN---SIHMFDR 269 (407)
Q Consensus 199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~tg~~dg---~i~vwd~ 269 (407)
+++|+|++..+|++++.|+.|++||+++++ ....+..+ ...|.+++|+|.+..++++++.|+ .|++||+
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999955899999999999999999877 45555555 788999999994457999999999 9999999
Q ss_pred CCCCCCCCCCceeeec-CCCCCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcc
Q 046899 270 RKLTSDGVGSPIHKFE-GHSAAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIE 347 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~ 347 (407)
+.. ..++..+. +|...|++++|+| ++.+ |++++.|+.|++||+++++.+..+..|..+|++++|+|+
T Consensus 248 ~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~----- 316 (416)
T 2pm9_A 248 RNA-----NTPLQTLNQGHQKGILSLDWCHQDEHL-LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPE----- 316 (416)
T ss_dssp TST-----TSCSBCCCSCCSSCEEEEEECSSCSSC-EEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTT-----
T ss_pred CCC-----CCCcEEeecCccCceeEEEeCCCCCCe-EEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCC-----
Confidence 982 26777888 8999999999999 7775 479999999999999999999999999999999999998
Q ss_pred ccceeeeeEeeCcc-ceeeeEEEeeeEEEeeccccc
Q 046899 348 TKLLTSIGMHLIHG-RLLVCLTMVKVLEIWRMIDLI 382 (407)
Q Consensus 348 ~~~~~~~~~~~~~~-~~i~~~~~d~~i~iwd~~~~~ 382 (407)
+ ..+++++.|++|+|||+....
T Consensus 317 -------------~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 317 -------------APDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp -------------CTTEEEECCSSSEEEEEESCCCC
T ss_pred -------------CCCEEEEEecCCcEEEEEccCCC
Confidence 5 789999999999999997543
No 44
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.3e-35 Score=269.85 Aligned_cols=301 Identities=12% Similarity=0.112 Sum_probs=232.3
Q ss_pred ccCCCeeEEEEee-cccccCccceEEEEeecccCccc-CCcceeeEEEeeCCCceEEEEEeCCC----C---eEEEEeeC
Q 046899 34 NLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEA-RSPFVKKFKTIIHPGEVNRIRELPQN----S---KIVATHTD 104 (407)
Q Consensus 34 ~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~----~---~~l~tg~~ 104 (407)
.+.-+..++.|.| .+++++.|+.+++|-. .... ..+........+|...|++++|+| + + ++|++|+.
T Consensus 14 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 14 AHDADIFSVSACNSFTVSCSGDGYLKVWDN---KLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSF 89 (397)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEES---BCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEET
T ss_pred hhhcCeEEEEecCCeEEEEcCCCEEEEEEC---CCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcC
Confidence 3455778888887 4778999999999932 2221 112223455558999999999999 6 8 99999999
Q ss_pred CCcEEEEeCcCCCC-----cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC----CCCCc-cccccCCC
Q 046899 105 SPDVLIWDVEAQPN-----RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG----GANSK-NASKSGGN 174 (407)
Q Consensus 105 dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~ 174 (407)
||.|++||+.++.. ...+..+..... ...+..+... ..... +++++.++
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~~~~l~~~~~dg 148 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMK---------------------KHSFWALKWGASNDRLLSHRLVATDVKG 148 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGG---------------------GSCEEEEEEECCC----CEEEEEEETTS
T ss_pred CCCEEEEEccCCcccccccceeecccccccC---------------------CCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence 99999999998765 444433321000 0011111111 22345 77888999
Q ss_pred CCCCCCCCC------cCcee-----eEee-------cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 175 GDKPLESPS------IGARG-----KYLG-------HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 175 ~i~i~d~~~------~~~~~-----~~~~-------~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
.+++||+.. ++.+. .+.+ |...|.+++|+|++ +|++++.||.|++||+++++ ....+.
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~ 224 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFE 224 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEE
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEe
Confidence 999999988 77776 7744 88999999999988 89999999999999999877 667777
Q ss_pred c---c---CcceEEEEecCCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCCceeeecC-------------CCCCEEEE
Q 046899 237 A---H---NADIHCVDWNPHDVNLILTGSAD---NSIHMFDRRKLTSDGVGSPIHKFEG-------------HSAAVLCV 294 (407)
Q Consensus 237 ~---~---~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~v 294 (407)
. | ...|.+++|+| ++++|++++.| |.|++||+++ ++++..+.. |...|.++
T Consensus 225 ~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp CCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTT------CCEEEEECBC--------CCBSBSSCEEEE
T ss_pred ccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCC------CcccceeccCcccccccccccccCCcEEEE
Confidence 7 8 99999999999 89999999999 9999999998 889999988 99999999
Q ss_pred EEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc------cC---------------CCcccCCCCcCcchhccccceee
Q 046899 295 QWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG------EL---------------KYPIIHPAYSSDMLDIETKLLTS 353 (407)
Q Consensus 295 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~d~~~~~~~~~~~ 353 (407)
+|+|++++| ++++.|+.|++||+++++.+..+. .| ..+|++++|+|+..-+..+
T Consensus 298 ~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~---- 372 (397)
T 1sq9_A 298 SFNDSGETL-CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG---- 372 (397)
T ss_dssp EECSSSSEE-EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT----
T ss_pred EECCCCCEE-EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc----
Confidence 999999965 799999999999999998888888 77 8888888888871000000
Q ss_pred eeEeeCccceeeeEEEeeeEEEeecc
Q 046899 354 IGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 354 ~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
......|++++.|+.|+|||+.
T Consensus 373 ----~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 373 ----ADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp ----CTTSCEEEEEETTTEEEEEEEE
T ss_pred ----ccccceEEEecCCCcEEEEEcC
Confidence 0001689999999999999997
No 45
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=264.01 Aligned_cols=301 Identities=17% Similarity=0.251 Sum_probs=228.7
Q ss_pred CceEEEeeeecccCCCeeEEEEeec----ccccCc---cceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCC
Q 046899 23 VPVLYDWLANHNLVWPSLSCRWGPQ----LEQATY---KNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQN 95 (407)
Q Consensus 23 ~~~~y~~l~~~~~~~p~~s~~~~~~----~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 95 (407)
.|-+...+. ..+.-+..++.|.|+ +++++. |+.+++|-. . ..........+|.+.|++++|+|..
T Consensus 6 ~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~---~----~~~~~~~~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 6 KPQIIAHIQ-KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI---Q----HGDLKLLREIEKAKPIKCGTFGATS 77 (357)
T ss_dssp CCCEEEEEE-EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE---C----SSSEEEEEEEEESSCEEEEECTTCC
T ss_pred hhHHhhhhc-cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeC---C----CCcccceeeecccCcEEEEEEcCCC
Confidence 344433333 235668888999883 456665 889999922 1 2223445555899999999999943
Q ss_pred --CeEEEEeeCCCcEEEEeCcCCC-CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccC
Q 046899 96 --SKIVATHTDSPDVLIWDVEAQP-NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSG 172 (407)
Q Consensus 96 --~~~l~tg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (407)
+++|++|+.||.|++||+.++. ....+.+|...+ .--.... . .........+++++.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-------~~~~~~~----------~---~~~s~~~~~l~~~~~ 137 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEII-------NAIDGIG----------G---LGIGEGAPEIVTGSR 137 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCE-------EEEEEES----------G---GGCC-CCCEEEEEET
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccce-------EEEeecc----------c---cccCCCccEEEEEeC
Confidence 7999999999999999999876 555555554331 1110000 0 011222345788999
Q ss_pred CCCCCCCCCCCcC-ceeeEeeccc----CEEEEE----ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899 173 GNGDKPLESPSIG-ARGKYLGHED----TVEDVQ----FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH 243 (407)
Q Consensus 173 ~~~i~i~d~~~~~-~~~~~~~~~~----~v~~l~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 243 (407)
++.+++||+..++ .+..+..|.+ .+.+++ |+|++ .+|++++.||.|++||+++++ . .....|...|.
T Consensus 138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~~v~ 213 (357)
T 3i2n_A 138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA--L-RWETNIKNGVC 213 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE--E-EEEEECSSCEE
T ss_pred CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc--e-eeecCCCCceE
Confidence 9999999999887 6777766554 899998 77888 899999999999999999877 3 44467889999
Q ss_pred EEEecCC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-----CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899 244 CVDWNPH--DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316 (407)
Q Consensus 244 ~l~~~~~--~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw 316 (407)
+++|+|. ++.+|++|+.||.|++||++. ++++..+. +|...|++++|+|+++.+|++++.||.|++|
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRT------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTTEEEEEEEEE------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred EEEcCCCCCCCCEEEEECCCCeEEEEeCcC------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 9999985 578999999999999999988 55555544 8999999999999998666899999999999
Q ss_pred eCCCCC-------------------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEe
Q 046899 317 DHEKIG-------------------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIW 376 (407)
Q Consensus 317 d~~~~~-------------------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iw 376 (407)
|++... .+..+..|..+|++++|+|+ +..++ +++.|+.|+||
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD------------------KRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS------------------STTEEEEEETTSEEEEE
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC------------------CCeEEEEecCCCcEEEE
Confidence 998643 34556678888999999888 77787 89999999999
Q ss_pred ecc
Q 046899 377 RMI 379 (407)
Q Consensus 377 d~~ 379 (407)
|+.
T Consensus 350 ~~~ 352 (357)
T 3i2n_A 350 IVT 352 (357)
T ss_dssp EEC
T ss_pred ECC
Confidence 997
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.6e-34 Score=261.56 Aligned_cols=264 Identities=18% Similarity=0.222 Sum_probs=209.9
Q ss_pred ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
.+.-+..++.|.|+ +++++.|+.+++|-.. ..........|...|.+++|+| ++.+|++|+.|+.+++
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~--------~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF--------TTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--------TCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC--------CCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEE
Confidence 35557888899874 8899999999999211 1122333446889999999999 8999999999999999
Q ss_pred EeCcCCCC------cccccCcCCCCC------CC--------CCcEEEEecccccc--ccccCCCCCcccccCC--CCCc
Q 046899 111 WDVEAQPN------RHAVLGAADSHP------DL--------DQSVVLWSIQDHVS--ALAAEPGSAKSTASGG--ANSK 166 (407)
Q Consensus 111 wd~~~~~~------~~~~~~~~~~~~------~~--------d~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~--~~~~ 166 (407)
|++..... ...+..|...+. +. |++|++||++++.. .+..+...+....... ....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 99875421 122223332221 11 89999999987754 3444444443333322 2357
Q ss_pred cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--ccCcceEE
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AHNADIHC 244 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~ 244 (407)
+++++.|+.+++||+.+++++..+.+|...|++++|+|++ .+|++|+.|++|++||++... ....+. .+...+.+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR--EVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeE
Confidence 8899999999999999999999999999999999999999 899999999999999999876 333333 33457899
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
++|+| ++.+|++|+.|+.|++||+++ ++.+..+.+|...|++++|+|++.+| ++|+.|++|++|+
T Consensus 290 ~~~s~-~g~~l~~g~~d~~i~vwd~~~------~~~~~~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSL-SGRLLFAGYNDYTINVWDVLK------GSRVSILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA 354 (354)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTT------CSEEEEECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred EEEeC-CCCEEEEEECCCcEEEEECCC------CceEEEEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence 99999 999999999999999999988 88899999999999999999999976 7999999999996
No 47
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=265.19 Aligned_cols=279 Identities=13% Similarity=0.117 Sum_probs=232.2
Q ss_pred CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcE
Q 046899 71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSV 136 (407)
Q Consensus 71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i 136 (407)
........+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.+|...+.+. |+.|
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred ccccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 44455667779999999999999 88999999999999999999988877777666543322 8999
Q ss_pred EEEecccccccccc-CCCCCcccccCCCCCccccccCC-----CCCCCCCCCCcC-----------ceeeEeeccc--CE
Q 046899 137 VLWSIQDHVSALAA-EPGSAKSTASGGANSKNASKSGG-----NGDKPLESPSIG-----------ARGKYLGHED--TV 197 (407)
Q Consensus 137 ~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~-----------~~~~~~~~~~--~v 197 (407)
++||+.+....... ....+..+........+++++.+ +.+.+||..... .+..+..|.. .+
T Consensus 99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999876443222 33333444444455567777777 999999987654 3344455555 99
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899 198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV 277 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~ 277 (407)
.+++|+|++ .+|++++.||.|++||+++... ....+..|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 179 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~------ 249 (369)
T 3zwl_B 179 TVAGWSTKG-KYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST------ 249 (369)
T ss_dssp EEEEECGGG-CEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------
T ss_pred eEEEEcCCC-CEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCC------
Confidence 999999998 7999999999999999998432 5677788999999999999 899999999999999999998
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--------------eEEEEeCCCCCcccccccCCCcccCCCCcCcc
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDM 343 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--------------~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 343 (407)
++.+..+. +...+.+++|+|+++++ ++++.++ .+++||+.+.+.+..+.+|..+|++++|+|+
T Consensus 250 ~~~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~- 326 (369)
T 3zwl_B 250 LQVLKKYE-TDCPLNTAVITPLKEFI-ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQ- 326 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECSSSSEE-EEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTT-
T ss_pred Cceeeeec-CCCCceeEEecCCCceE-EEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCC-
Confidence 78888887 78899999999999976 5777777 8999999999999999999999999999998
Q ss_pred hhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++++.|+.|+||++.
T Consensus 327 -----------------~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 327 -----------------GTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp -----------------SSEEEEEETTSEEEEEEEC
T ss_pred -----------------CCEEEEEcCCCeEEEEECc
Confidence 8899999999999999998
No 48
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4e-34 Score=267.57 Aligned_cols=279 Identities=17% Similarity=0.324 Sum_probs=223.8
Q ss_pred EEEEeec-ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc
Q 046899 41 SCRWGPQ-LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR 119 (407)
Q Consensus 41 s~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~ 119 (407)
.++|.+. +...+.|++++||-. . ...........+|.+.|++|+|+| ++++||+|+.||+|+|||+.+++.+
T Consensus 110 ~l~wS~~n~lAvgld~tV~lWd~-----~-tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 110 LVDWSSGNVLAVALDNSVYLWSA-----S-SGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp CEEECTTSEEEEEETTEEEEEET-----T-TCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred eEEECCCCEEEEEeCCEEEEEEC-----C-CCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEE
Confidence 3678663 333445889999921 1 122233344456889999999999 8999999999999999999998877
Q ss_pred ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCc-CceeeEeecccCEE
Q 046899 120 HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSI-GARGKYLGHEDTVE 198 (407)
Q Consensus 120 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~ 198 (407)
..+.+|...+ .....+ ...+++++.++.+++||.... ..+..+.+|...+.
T Consensus 183 ~~~~~h~~~v-------~~~s~~---------------------~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 183 RNMTSHSARV-------GSLSWN---------------------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234 (420)
T ss_dssp EEECCCSSCE-------EEEEEE---------------------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEEeCCCCce-------EEEeeC---------------------CCEEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence 7776664431 111111 124677888999999987764 45577889999999
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCCCCEEEEE--eCCCcEEEEeCCCCCC
Q 046899 199 DVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTG--SADNSIHMFDRRKLTS 274 (407)
Q Consensus 199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~tg--~~dg~i~vwd~~~~~~ 274 (407)
.+.|+|++ .++++++.|+.|++||..+++. ........|...|.+++|+|.+..+++++ +.|+.|++||+++
T Consensus 235 ~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t--- 310 (420)
T 4gga_A 235 GLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--- 310 (420)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---
T ss_pred eeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---
Confidence 99999999 8999999999999999987652 13456678999999999999777787764 5799999999999
Q ss_pred CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe-eCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceee
Q 046899 275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS-AEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS 353 (407)
Q Consensus 275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 353 (407)
++++..+..| ..+.++.|+|++..+++++ +.|+.|+|||+.+++.+..+.+|..+|++++||||
T Consensus 311 ---~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd----------- 375 (420)
T 4gga_A 311 ---GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD----------- 375 (420)
T ss_dssp ---TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------
T ss_pred ---cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-----------
Confidence 8888888755 5789999999999876433 37999999999999999999999999999999999
Q ss_pred eeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 354 IGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 354 ~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+..|++++.|++|+|||+.+
T Consensus 376 -------g~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 376 -------GATVASAAADETLRLWRCFE 395 (420)
T ss_dssp -------SSCEEEEETTTEEEEECCSC
T ss_pred -------CCEEEEEecCCeEEEEECCC
Confidence 88999999999999999974
No 49
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-34 Score=265.09 Aligned_cols=290 Identities=10% Similarity=0.106 Sum_probs=206.1
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCC-------cEEEEeCcCCCCcc----------cccCcCCCCCCC------------
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSP-------DVLIWDVEAQPNRH----------AVLGAADSHPDL------------ 132 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg-------~i~vwd~~~~~~~~----------~~~~~~~~~~~~------------ 132 (407)
-.-+|.+++|+| ++++|++|+.|. .|++|++....... .+.++...+...
T Consensus 13 ~g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~ 91 (365)
T 4h5i_A 13 VGYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCN 91 (365)
T ss_dssp CSSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECC
T ss_pred CCCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEEC
Confidence 456899999999 899999998654 49999987654321 122232222111
Q ss_pred -----------CCcEEEEeccccccccc------c-----CCCCCcccccCCCCCccc--cccCCCCCCCCCCCCcCcee
Q 046899 133 -----------DQSVVLWSIQDHVSALA------A-----EPGSAKSTASGGANSKNA--SKSGGNGDKPLESPSIGARG 188 (407)
Q Consensus 133 -----------d~~i~~w~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~--~~~~~~~i~i~d~~~~~~~~ 188 (407)
|+.+++|++......+. . ....+..++..+....++ +++.|+.+++||..+++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 78899999865422111 0 111122222333333443 45578999999999999888
Q ss_pred eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC----cE
Q 046899 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN----SI 264 (407)
Q Consensus 189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg----~i 264 (407)
.+. |...|.+++|+|++ .++++++ ++.+++|+..++..........|...|.+++|+| ++.++++++.|+ .+
T Consensus 172 ~~~-~~~~V~~v~fspdg-~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDG-KVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEE-CSSCCCEEEECTTS-SEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEE
T ss_pred EeC-CCCceEEEEEccCC-ceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEE
Confidence 875 78889999999999 7888887 5567778877776433345567889999999999 999999999887 68
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-ccCCCcccCCCCcCcc
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-GELKYPIIHPAYSSDM 343 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~ 343 (407)
++||+...... ......+.+|..+|++++|+|+|++ ||+|+.|++|+|||+++++.+..+ .+|..+|++++||||
T Consensus 248 ~~~~~~~~~~~--~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd- 323 (365)
T 4h5i_A 248 TKISIKSGNTS--VLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD- 323 (365)
T ss_dssp EEEEEETTEEE--EEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT-
T ss_pred eecccccceec--ceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC-
Confidence 88998762100 1124567789999999999999995 589999999999999999888774 689999999999999
Q ss_pred hhccccceeeeeEeeCccceeeeEEEeeeEEEeecccccc--CChHHHHHHHhhcc
Q 046899 344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY--RPEEEVLAELDKFK 397 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~h~ 397 (407)
+.+|+++|.|++|||||+..... ....+.+.+++.|.
T Consensus 324 -----------------g~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~kl~~~~ 362 (365)
T 4h5i_A 324 -----------------STYVASVSAANTIHIIKLPLNYANYTSMKQKISKLEHHH 362 (365)
T ss_dssp -----------------SCEEEEEETTSEEEEEECCTTTTC---------------
T ss_pred -----------------CCEEEEEeCCCeEEEEEcCCCCcCccCccccceeeeccc
Confidence 89999999999999999964322 22345555666543
No 50
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.4e-35 Score=274.74 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=209.9
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCCCCC---------------CCcEEEEe
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSHPDL---------------DQSVVLWS 140 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~---------------d~~i~~w~ 140 (407)
...+|...|++|+|+|.++++||+|+.||+|+|||+.++.... .+.+|...+.++ |++|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 4457999999999999888899999999999999998775433 334565544322 99999999
Q ss_pred ccccccccccCCC----CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC
Q 046899 141 IQDHVSALAAEPG----SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD 216 (407)
Q Consensus 141 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d 216 (407)
+++.......... ....+........+++++.++.+++||+. ++.+..+.+|...|++++|+|++..+|++|+.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 9876432222111 12222333344568889999999999986 456778889999999999999987789999999
Q ss_pred CcEEEEEcCCCCCC-ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC------
Q 046899 217 SCLILWDARSGSTP-AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA------ 289 (407)
Q Consensus 217 g~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~------ 289 (407)
+.|++||+++.... ......+|...|++++|+| ++++|++|+.||.|++||++. +.....+..|..
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~------~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ------WDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSS------SSSEEEECCCCCCCCSSS
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCC------CccceEEecccccccccc
Confidence 99999999987632 2234457999999999999 999999999999999999998 677776665542
Q ss_pred CEEEEEEcCCCCCEEEE-----------eeCCCeEEEEeCCCCCcccccc-cCCCcccCC-CCcCcchhccccceeeeeE
Q 046899 290 AVLCVQWSPDKSSVFGS-----------SAEDGILNIWDHEKIGEKQDYG-ELKYPIIHP-AYSSDMLDIETKLLTSIGM 356 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~s-----------~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~-~~s~d~~~~~~~~~~~~~~ 356 (407)
.+....|+|++..+++. +..++.|++||..+++.+..+. .|...|.++ +|+||
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd-------------- 411 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM-------------- 411 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT--------------
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC--------------
Confidence 23345666666644322 2244689999999988876654 577778887 58888
Q ss_pred eeCccceeeeEEEeeeEEEeecc
Q 046899 357 HLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 357 ~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++|+ |++|+||++.
T Consensus 412 ----g~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 412 ----GDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp ----SSCEEEEC-SSEEEECCCC
T ss_pred ----CCEEEEEc-CCcEEEEECC
Confidence 77888776 8899999998
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.7e-34 Score=261.10 Aligned_cols=273 Identities=14% Similarity=0.170 Sum_probs=197.8
Q ss_pred CCCeeEEEEeec---ccccCc------cceEEEEeecccCcccCC-cceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCC
Q 046899 36 VWPSLSCRWGPQ---LEQATY------KNRQRLYLSEQFNEEARS-PFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDS 105 (407)
Q Consensus 36 ~~p~~s~~~~~~---~~~~~~------~~~~~i~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d 105 (407)
+-+..++.|.|+ +++++. |+.+++| +..... .........+|...|++++|+| ++. +++++.|
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~-----~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~d 114 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVF-----KDPEGAPNESLCTAGVQTEAGVTDVAWVS-EKG-ILVASDS 114 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEE-----SSCC---CGGGCSEEEECSSCEEEEEEET-TTE-EEEEETT
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEE-----ECCCCCcceeEecccCCCCCCEEEEEEcC-CCC-EEEEECC
Confidence 445567899885 777765 5566666 222111 1223445568999999999999 665 5567789
Q ss_pred CcEEEEeCcCCCCccc----ccCcCCCCC------CC--------CCcEEEEecccccc--ccccCCCCCcccccCCCC-
Q 046899 106 PDVLIWDVEAQPNRHA----VLGAADSHP------DL--------DQSVVLWSIQDHVS--ALAAEPGSAKSTASGGAN- 164 (407)
Q Consensus 106 g~i~vwd~~~~~~~~~----~~~~~~~~~------~~--------d~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~- 164 (407)
|+|+|||+.+++.... ..+|...+. +. |++|++||+.++.. .+..+...+..+......
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 9999999988764332 223433322 21 99999999988754 334444444444443333
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI 242 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 242 (407)
..+++++.|+.+++||+.+++....+. .|...+.+++|+|++..+|++|+.|+.|++||+++++ ....+..|...|
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~~~~~~v 272 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSAVHSQNI 272 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEECCCSSCE
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--EeEEEeccceeE
Confidence 457889999999999999988776654 4677899999999876899999999999999999887 677888999999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCC
Q 046899 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
++++|+|.++++|++|+.||.|+|||+++ ++++..+ +|...|++|+|+| ++. +|+|++.|++|++||+.+.
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~------~~~~~~~-~H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADF------SEVFRDL-SHRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTS------CEEEEEC-CCSSCEEEEEECSSSTT-EEEEEETTSCEEEEECC--
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCC------CcEeEEC-CCCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCC
Confidence 99999995557899999999999999998 6666554 7999999999999 566 5689999999999999875
Q ss_pred Cccc
Q 046899 322 GEKQ 325 (407)
Q Consensus 322 ~~~~ 325 (407)
....
T Consensus 345 ~~~~ 348 (357)
T 4g56_B 345 GRTE 348 (357)
T ss_dssp ----
T ss_pred Cccc
Confidence 4443
No 52
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-35 Score=298.16 Aligned_cols=354 Identities=10% Similarity=0.000 Sum_probs=237.9
Q ss_pred hhhhhhhccCceEEEeeeecccCCCeeEEEEeec--ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE
Q 046899 14 DRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ--LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE 91 (407)
Q Consensus 14 ~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 91 (407)
-.+++|.....-. +..+...-+...+.|.|. +++++.|+.+++| +.. .......+.|.+.|++++|
T Consensus 39 g~I~lw~~~~~~~---~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lW---d~~------~~~~~~~~~~~~~V~~v~~ 106 (902)
T 2oaj_A 39 GEVHIYGQQQVEV---VIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVL---SLY------SQKVLTTVFVPGKITSIDT 106 (902)
T ss_dssp SEEEEECSTTCEE---EEECSSCCCEEEEEEETTTEEEEEETTCEEEEE---ETT------TCSEEEEEECSSCEEEEEC
T ss_pred CEEEEEeCCCcEE---EEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEE---ECC------CCcEEEEEcCCCCEEEEEE
Confidence 3567787654432 222334557778888773 8899999999999 221 1223444468899999999
Q ss_pred eCCCCeEEEEeeCCCcEEEEeCcCCCCc-----------ccccCcCCCCCCC---------------CCcEEEEeccccc
Q 046899 92 LPQNSKIVATHTDSPDVLIWDVEAQPNR-----------HAVLGAADSHPDL---------------DQSVVLWSIQDHV 145 (407)
Q Consensus 92 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~~---------------d~~i~~w~~~~~~ 145 (407)
+| ++++|++|+.||+|++||+.+.... ....+|...+.++ |+.+ +||+.+..
T Consensus 107 sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 107 DA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE 184 (902)
T ss_dssp CT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred CC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence 99 8899999999999999999876542 1223333333221 8899 99998764
Q ss_pred cc--cccC------------------CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee--E---ee--------
Q 046899 146 SA--LAAE------------------PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK--Y---LG-------- 192 (407)
Q Consensus 146 ~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~---~~-------- 192 (407)
.. +..+ ...+..+........+++++.|+.+++||..+++++.. + ..
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~ 264 (902)
T 2oaj_A 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYI 264 (902)
T ss_dssp EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCC
T ss_pred eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCC
Confidence 32 2211 12233344444456799999999999999998877643 2 11
Q ss_pred -----cccCEEEEEEC----CCCCcEEEEEeCC-----------------------------------------------
Q 046899 193 -----HEDTVEDVQFC----PSSAQEFCSVGDD----------------------------------------------- 216 (407)
Q Consensus 193 -----~~~~v~~l~~~----~~~~~~l~s~~~d----------------------------------------------- 216 (407)
|...|++++|+ |++..+|++|+.|
T Consensus 265 ~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 344 (902)
T 2oaj_A 265 RDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP 344 (902)
T ss_dssp CCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred CCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence 34578999994 4432456666443
Q ss_pred -----------------------------CcEEEEEcCCCCCCcee------e---------------------------
Q 046899 217 -----------------------------SCLILWDARSGSTPAVK------V--------------------------- 234 (407)
Q Consensus 217 -----------------------------g~i~iwd~~~~~~~~~~------~--------------------------- 234 (407)
|.|++||+.++.. ... .
T Consensus 345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~-~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~ 423 (902)
T 2oaj_A 345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF-TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSA 423 (902)
T ss_dssp EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE-ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHT
T ss_pred eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc-ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhc
Confidence 3344444433210 000 0
Q ss_pred -------ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee--ec-----CCCCCEEEEEEcCCC
Q 046899 235 -------EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK--FE-----GHSAAVLCVQWSPDK 300 (407)
Q Consensus 235 -------~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~--~~-----~h~~~v~~v~~~~~~ 300 (407)
+.+|...+.+++|+| ++++|++|+.|++|++||+...... ...... +. +|...|++|+|+|++
T Consensus 424 ~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~--~~~~~~~~l~~~~~~~h~~~V~svafspdg 500 (902)
T 2oaj_A 424 AQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQ--DNASFEVNLSRTLNKAKELAVDKISFAAET 500 (902)
T ss_dssp TBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTT--TTBCEEEEHHHHTTCSSSCCEEEEEEETTT
T ss_pred ccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCcccc--CCceEEeechhhcCCCCCCceeEEEecCCC
Confidence 112223333445578 8899999999999999999872100 001111 11 789999999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCCC---------------------------------------------cccccccCCCccc
Q 046899 301 SSVFGSSAEDGILNIWDHEKIG---------------------------------------------EKQDYGELKYPII 335 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~~~~---------------------------------------------~~~~~~~~~~~v~ 335 (407)
++ ||+|+.||+|+|||+.+++ ++..+.+|..+|+
T Consensus 501 ~~-LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~ 579 (902)
T 2oaj_A 501 LE-LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS 579 (902)
T ss_dssp TE-EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred Ce-EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence 95 5899999999999998653 2455677899999
Q ss_pred CCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh-hcccceeEeecc
Q 046899 336 HPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD-KFKSHIFGCDKS 406 (407)
Q Consensus 336 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s 406 (407)
+++|||| + .|++|+.|++|+|||+........+.+ ..+. +|.+.|++|+||
T Consensus 580 svafSpd------------------G-~lAsgs~D~tv~lwd~~~~~~~~~~~~-~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 580 AINNSNI------------------G-FVGIAYAAGSLMLIDRRGPAIIYMENI-REISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEECBT------------------S-EEEEEETTSEEEEEETTTTEEEEEEEG-GGTCSSCCCCEEEEEEE
T ss_pred EEEecCC------------------c-EEEEEeCCCcEEEEECCCCeEEEEeeh-hHhccccccceEEEEEE
Confidence 9999998 8 999999999999999873211100112 4565 999999999998
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.3e-34 Score=284.23 Aligned_cols=285 Identities=17% Similarity=0.195 Sum_probs=219.5
Q ss_pred cCCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899 35 LVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110 (407)
Q Consensus 35 ~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v 110 (407)
+.-+...+.|.| .+++++.|+.+++| ++.............+.+|.+.|++++|+| ++++|+||+.||+|+|
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W---~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILW---KLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRL 456 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEE---ECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEE---EccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEE
Confidence 444566777765 37899999999999 333222222233455668999999999999 8899999999999999
Q ss_pred EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899 111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY 190 (407)
Q Consensus 111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 190 (407)
||+.++.....+.+|...+ ..+........+++++.|+.+++||..........
T Consensus 457 wd~~~~~~~~~~~~h~~~v--------------------------~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 457 WDLAAGVSTRRFVGHTKDV--------------------------LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp EETTTTEEEEEEECCSSCE--------------------------EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred EECCCCcceeEEeCCCCCE--------------------------EEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence 9999887666666654331 11112222345888999999999997654332222
Q ss_pred ---eecccCEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 191 ---LGHEDTVEDVQFCPSSA-QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 191 ---~~~~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
.+|...|.+++|+|++. ..|++++.|++|++||+++.+ ....+.+|...|++++|+| ++++|++|+.||.|++
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~i 587 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLL 587 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEE
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEE
Confidence 36888999999999862 479999999999999999887 6778889999999999999 9999999999999999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC--------------
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY-------------- 332 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------------- 332 (407)
||+++ ++++..+.. ...|.+++|+|++. ++++ +.|+.|++||+++.+.+..+..+..
T Consensus 588 wd~~~------~~~~~~~~~-~~~v~~~~~sp~~~-~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 588 WDLAE------GKKLYSLEA-NSVIHALCFSPNRY-WLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp EETTT------TEEEECCBC-SSCEEEEEECSSSS-EEEE-EETTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred EECCC------CceEEEecC-CCcEEEEEEcCCCc-EEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence 99998 788888764 56899999999987 4444 4577899999998776655543211
Q ss_pred -----cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 333 -----PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 333 -----~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+++++|||| +..|++|+.||+|+||++.
T Consensus 659 ~~~~~~~~~l~~spd------------------g~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSAD------------------GSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECTT------------------SSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcCC------------------CCEEEEEcCCCeEEEEecc
Confidence 1344555555 8899999999999999985
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.2e-34 Score=269.74 Aligned_cols=315 Identities=17% Similarity=0.200 Sum_probs=231.5
Q ss_pred hhhhhccCceE-EEeeeecccCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC
Q 046899 16 YTQWKSLVPVL-YDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP 93 (407)
Q Consensus 16 ~~~w~~~~~~~-y~~l~~~~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 93 (407)
.++|+...+.. ...+..|... ....+.+.+ .+++++.|+.+++|- ... ........+|.+.|++++|+|
T Consensus 102 ~~~w~~~~~~~~~~~l~~h~~~-v~~~~~~~~~~l~sgs~dg~i~vwd---~~~-----~~~~~~~~~h~~~V~~l~~~~ 172 (464)
T 3v7d_B 102 LKNWYNPKFVPQRTTLRGHMTS-VITCLQFEDNYVITGADDKMIRVYD---SIN-----KKFLLQLSGHDGGVWALKYAH 172 (464)
T ss_dssp HHHHHCTTCCCEEEEEECCSSS-CEEEEEEETTEEEEEETTSCEEEEE---TTT-----TEEEEEECCCSSCEEEEEECS
T ss_pred HhhhcCCCcCcceEEEcCCCCC-cEEEEEECCCEEEEEcCCCcEEEEE---CCC-----CcEEEEEeCCCcCEEEEEEcC
Confidence 46776655421 2223333222 122344444 588999999999992 111 122334457999999999998
Q ss_pred CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCC
Q 046899 94 QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGG 173 (407)
Q Consensus 94 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (407)
++ +|++|+.||+|++||+.+++....+.+|...+.. ..+. .......+++++.+
T Consensus 173 -~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~-------l~~~-----------------~~~~~~~l~s~s~d 226 (464)
T 3v7d_B 173 -GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC-------LDIV-----------------EYKNIKYIVTGSRD 226 (464)
T ss_dssp -TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-------EEEE-----------------ESSSCEEEEEEETT
T ss_pred -CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEE-------EEEe-----------------cCCCCCEEEEEcCC
Confidence 55 8999999999999999988777666665443211 1100 00011235555666
Q ss_pred CCCCCCCCCCcC-----------------------ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 174 NGDKPLESPSIG-----------------------ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 174 ~~i~i~d~~~~~-----------------------~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
+.+++||+.... .+..+.+|...|.++. +++ .++++|+.||.|++||+++++
T Consensus 227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~-- 301 (464)
T 3v7d_B 227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMK-- 301 (464)
T ss_dssp SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTE--
T ss_pred CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCc--
Confidence 666666665443 2456678889998885 555 789999999999999999887
Q ss_pred ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
....+.+|...|.+++|+| +++++++|+.||.|++||+++ ++++.++.+|...|.+++|++ . .+++++.|
T Consensus 302 ~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~d 371 (464)
T 3v7d_B 302 CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYTLQGHTALVGLLRLSD--K-FLVSAAAD 371 (464)
T ss_dssp EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEEEEEECS--S-EEEEEETT
T ss_pred EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCC
Confidence 6778889999999999999 899999999999999999998 899999999999999999984 4 45799999
Q ss_pred CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899 311 GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL 390 (407)
Q Consensus 311 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~ 390 (407)
|.|++||+++........ +...+..++|+++ +..+++++ |+.|+|||+. +++++
T Consensus 372 g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~l~~~~-dg~i~iwd~~------~g~~~ 425 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVS------------------DNILVSGS-ENQFNIYNLR------SGKLV 425 (464)
T ss_dssp SEEEEEETTTCCEEEEEE-CTTCCCEEEEEEC------------------SSEEEEEE-TTEEEEEETT------TCCEE
T ss_pred CcEEEEECCCCceeeeec-CCCCccEEEEEeC------------------CCEEEEec-CCeEEEEECC------CCcEE
Confidence 999999999876554442 3444444555554 77888887 9999999998 67777
Q ss_pred HH-HhhcccceeEeecc
Q 046899 391 AE-LDKFKSHIFGCDKS 406 (407)
Q Consensus 391 ~~-~~~h~~~v~~~~~s 406 (407)
.. +.+|.+.|.+++|+
T Consensus 426 ~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 426 HANILKDADQIWSVNFK 442 (464)
T ss_dssp ESCTTTTCSEEEEEEEE
T ss_pred ehhhccCCCcEEEEEec
Confidence 65 77899999999986
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=257.92 Aligned_cols=266 Identities=19% Similarity=0.227 Sum_probs=218.5
Q ss_pred eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEe
Q 046899 75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWS 140 (407)
Q Consensus 75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~ 140 (407)
....+.+|.+.|++++| | ++++|++|+.||.|++||+.+......+..|...+... |+.+.+|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 34455689999999999 7 78899999999999999998876665555554433222 89999999
Q ss_pred ccccc-----cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEe
Q 046899 141 IQDHV-----SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVG 214 (407)
Q Consensus 141 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~ 214 (407)
+.... ..+..+...+..+.. ....+++++.++.+++|| ..+.+..+..|...+.+++|.| ++ .++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~ 162 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE-NKFLTAS 162 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT-TEEEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC-CEEEEEE
Confidence 87642 223333333333333 345788899999999999 6677788889999999999998 55 8999999
Q ss_pred CCCcEEEEEcCCCCCCceeeecc-cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEE
Q 046899 215 DDSCLILWDARSGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLC 293 (407)
Q Consensus 215 ~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~ 293 (407)
.||.|++||.. . ....+.. |...+.+++|+| ++. +++++.||.|++||+++ ++++..+..|...|++
T Consensus 163 ~d~~i~i~d~~--~--~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 163 ADKTIKLWQND--K--VIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHT------GDVLRTYEGHESFVYC 230 (313)
T ss_dssp TTSCEEEEETT--E--EEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTT------CCEEEEEECCSSCEEE
T ss_pred CCCCEEEEecC--c--eEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCc------hhhhhhhhcCCceEEE
Confidence 99999999933 2 3444555 899999999999 766 99999999999999998 8999999999999999
Q ss_pred EEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899 294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL 373 (407)
Q Consensus 294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i 373 (407)
++|+|++. + ++++.||.|++||+++++....+..+..+|++++|+|+ +. +++++.|+.|
T Consensus 231 ~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~------------------~~-~~~~~~dg~i 289 (313)
T 3odt_A 231 IKLLPNGD-I-VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN------------------GD-IIVGSSDNLV 289 (313)
T ss_dssp EEECTTSC-E-EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT------------------SC-EEEEETTSCE
T ss_pred EEEecCCC-E-EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC------------------CC-EEEEeCCCcE
Confidence 99999994 5 69999999999999999999999999999999999887 54 6789999999
Q ss_pred EEeeccc
Q 046899 374 EIWRMID 380 (407)
Q Consensus 374 ~iwd~~~ 380 (407)
++||+..
T Consensus 290 ~iw~~~~ 296 (313)
T 3odt_A 290 RIFSQEK 296 (313)
T ss_dssp EEEESCG
T ss_pred EEEeCCC
Confidence 9999984
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.5e-34 Score=263.90 Aligned_cols=273 Identities=17% Similarity=0.179 Sum_probs=213.0
Q ss_pred eEEEeeCCCceEEEEEeCCCC-eEEEEeeCCCcEEEEeCcCCCCccccc--CcCCCCCCC---------------CCcEE
Q 046899 76 KFKTIIHPGEVNRIRELPQNS-KIVATHTDSPDVLIWDVEAQPNRHAVL--GAADSHPDL---------------DQSVV 137 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~---------------d~~i~ 137 (407)
.....+|.+.|++++|+| ++ ++|++|+.||.|++||+.++.....+. +|...+.++ |+.++
T Consensus 66 ~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEECCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred EEeccCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 345568999999999999 55 899999999999999999877665443 343322211 89999
Q ss_pred EEeccccccc-cccCC---CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE
Q 046899 138 LWSIQDHVSA-LAAEP---GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV 213 (407)
Q Consensus 138 ~w~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~ 213 (407)
+||+.+.... +.... ..+..+........+++++.++.+++||+ .++.+..+.+|...|.+++|+|++..+|+++
T Consensus 145 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 145 LRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred EEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence 9999865322 22111 22334444445567899999999999998 5778889999999999999999994499999
Q ss_pred eCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC---
Q 046899 214 GDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS--- 288 (407)
Q Consensus 214 ~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~--- 288 (407)
+.|+.|++||+++... .....+ .|...|.+++|+|.++.+|++++.|+.|++||+++ ++.+..+..|.
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD------WSKPDQIIIHPHRQ 296 (383)
T ss_dssp ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB------TTSCSEEEECCBCC
T ss_pred eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC------Cccccccccccccc
Confidence 9999999999998431 134444 79999999999996789999999999999999998 56655555432
Q ss_pred --------------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc--CCCcccCCCCcCcchhcccccee
Q 046899 289 --------------AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE--LKYPIIHPAYSSDMLDIETKLLT 352 (407)
Q Consensus 289 --------------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~~~~~~~~ 352 (407)
..+..++|+|++.+ +++.|+.|++||+.+++.+..+.+ +...+..++|+|+
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~---------- 363 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT---------- 363 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTT----------
T ss_pred cccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecC----------
Confidence 34555777777764 778999999999999998888876 3455666688888
Q ss_pred eeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 353 SIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 353 ~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++++ |++|+|||+.
T Consensus 364 --------g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 364 --------GDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp --------SSEEEEEE-TTEEEEEECC
T ss_pred --------ccEEEEec-CCcEEEEecC
Confidence 88899996 9999999986
No 57
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-34 Score=303.94 Aligned_cols=348 Identities=15% Similarity=0.197 Sum_probs=274.8
Q ss_pred hhhhhhccCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE
Q 046899 15 RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE 91 (407)
Q Consensus 15 ~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 91 (407)
.+++|+.........+. ...-+..++.|.|+ +++++.|+.+++|. .. .. .......+|.+.|.+++|
T Consensus 638 ~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd---~~--~~---~~~~~~~~~~~~v~~~~~ 707 (1249)
T 3sfz_A 638 TLQVFKAETGEKLLDIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWD---SA--TG---KLVHTYDEHSEQVNCCHF 707 (1249)
T ss_dssp CEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE---TT--TC---CEEEEEECCSSCEEEEEE
T ss_pred eEEEEECCCCCEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEE---CC--CC---ceEEEEcCCCCcEEEEEE
Confidence 46677765554433333 34456778889874 88899999999992 21 11 223344579999999999
Q ss_pred eCC-CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecccccccc--------
Q 046899 92 LPQ-NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSAL-------- 148 (407)
Q Consensus 92 ~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~-------- 148 (407)
+|. ++.++++|+.||.|++||+.++.....+.+|...+... |+.+++||+.+.....
T Consensus 708 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp CSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred ecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence 984 45689999999999999999988877777766544322 8999999987652210
Q ss_pred -----------------cc--------------------------------CCCCCcccccCCCCCccccccCCCCCCCC
Q 046899 149 -----------------AA--------------------------------EPGSAKSTASGGANSKNASKSGGNGDKPL 179 (407)
Q Consensus 149 -----------------~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 179 (407)
.. +...+...........+++++.++.+++|
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 867 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 01 11111222223334567788999999999
Q ss_pred CCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC--------------------------------
Q 046899 180 ESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG-------------------------------- 227 (407)
Q Consensus 180 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------------------- 227 (407)
+..++..+..+.+|...|.+++|+|++ ..|++++.||.|++||+.+.
T Consensus 868 d~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 868 NIDSRLKVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EcCCCceeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 999999999999999999999999998 78999999999999986421
Q ss_pred ---------------------------------------------CCCceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899 228 ---------------------------------------------STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN 262 (407)
Q Consensus 228 ---------------------------------------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg 262 (407)
.......+.+|...|.+++|+| +++++++++.||
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg 1025 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDS 1025 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSS
T ss_pred EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCC
Confidence 0012334457888999999999 899999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
.|++||+.+ ++.. .+..|...|.+++|+|++. + ++++.|+.|++||+.+++....+.+|..+|++++|+||
T Consensus 1026 ~i~vwd~~~------~~~~-~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A 1026 VIQVWNWQT------GDYV-FLQAHQETVKDFRLLQDSR-L-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp BEEEEETTT------TEEE-CCBCCSSCEEEEEECSSSE-E-EEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS
T ss_pred EEEEEECCC------CceE-EEecCCCcEEEEEEcCCCc-E-EEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCC
Confidence 999999998 5544 4567999999999999875 4 58999999999999999999999999999999999998
Q ss_pred chhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 343 MLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..+++++.|++|++||+. +++++..+.+|.+.|++++||+
T Consensus 1097 ------------------~~~l~s~s~d~~v~iwd~~------~~~~~~~l~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A 1097 ------------------ATKFSSTSADKTAKIWSFD------LLSPLHELKGHNGCVRCSAFSL 1137 (1249)
T ss_dssp ------------------SSSCEEECCSSCCCEECSS------SSSCSBCCCCCSSCEEEEEECS
T ss_pred ------------------CCEEEEEcCCCcEEEEECC------CcceeeeeccCCCcEEEEEECC
Confidence 8899999999999999998 6778888999999999999986
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.8e-35 Score=274.27 Aligned_cols=301 Identities=12% Similarity=0.102 Sum_probs=220.9
Q ss_pred EEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEE-EEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899 41 SCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRI-RELPQNSKIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 41 s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~tg~~dg~i~vwd~~~~ 116 (407)
.+.|.| .+++++.++.+++|- ...... ....... .+.++ .|+| ++++|++|+.||.|++||+.++
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d---~~~~~~------~~~~~~~-~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFN---TIIRDG------SKMLKRA-DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEE---CCSEET------TTTSCSC-CEEEEEEECS-SSCEEEEEETTSCEEEECTTSC
T ss_pred ceeeeecCCeEEEEEcCCcEEEEE---ecccce------eeEEecC-CceEEEEEec-CCCEEEEEECCCCEEEEeCCCc
Confidence 345655 488999999999992 221111 1111122 44444 5555 8899999999999999999877
Q ss_pred CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC
Q 046899 117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT 196 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 196 (407)
.....+.+|...+ ..+........+++++.|+.+++||+.+++.+..+.+|...
T Consensus 130 ~~~~~~~~h~~~v--------------------------~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 183 (420)
T 3vl1_A 130 LQREIDQAHVSEI--------------------------TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 183 (420)
T ss_dssp EEEEETTSSSSCE--------------------------EEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC
T ss_pred ceeeecccccCcc--------------------------EEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc
Confidence 6555544443321 11112222345788999999999999999999999999999
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc---cC---------------------cceEEEEecCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---HN---------------------ADIHCVDWNPHDV 252 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~---------------------~~v~~l~~~~~~~ 252 (407)
|.+++|+|++ .+|++++.|+.|++||+++++ ....+.. +. ..+.+++|+| ++
T Consensus 184 v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 259 (420)
T 3vl1_A 184 VTDIAIIDRG-RNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YG 259 (420)
T ss_dssp EEEEEEETTT-TEEEEEETTSCEEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TT
T ss_pred EEEEEEcCCC-CEEEEEcCCCcEEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CC
Confidence 9999999998 899999999999999999887 4555543 33 3444555678 88
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc-cccccc-
Q 046899 253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE-KQDYGE- 329 (407)
Q Consensus 253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~-~~~~~~- 329 (407)
++|++|+.||.|++||+++ ++.+..+. .|...|++++|+|++..+|++|+.||.|++||+++++. +..+..
T Consensus 260 ~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNVFS------KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp EEEEEEETTSCEEEEETTT------CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred CEEEEEcCCCeEEEEECCC------CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence 9999999999999999998 67666664 48899999999999995668999999999999998755 555655
Q ss_pred CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC---hHHHHHHHhhcccceeEeecc
Q 046899 330 LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP---EEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 330 ~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s 406 (407)
+..+++.+.+ ++ +..+++++.|++|+||++....... .......+.+|.+.|.+++|+
T Consensus 334 ~~~~v~~~~~-~~------------------~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 394 (420)
T 3vl1_A 334 EGTPINNVYF-AA------------------GALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYV 394 (420)
T ss_dssp TTSCEEEEEE-ET------------------TEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEE
T ss_pred CCCCceEEEe-CC------------------CCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEc
Confidence 4555544432 22 6689999999999999997421100 011122356788999999998
Q ss_pred C
Q 046899 407 C 407 (407)
Q Consensus 407 ~ 407 (407)
+
T Consensus 395 ~ 395 (420)
T 3vl1_A 395 S 395 (420)
T ss_dssp C
T ss_pred c
Confidence 5
No 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-34 Score=306.54 Aligned_cols=353 Identities=16% Similarity=0.213 Sum_probs=274.7
Q ss_pred hhhhhhccCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcc-----------------------
Q 046899 15 RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEE----------------------- 68 (407)
Q Consensus 15 ~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~----------------------- 68 (407)
.+.+|+.........+. ...-+...+.|.|+ +++++.|+.+++|........
T Consensus 724 ~v~vwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801 (1249)
T ss_dssp CEEEEETTSSSEEEEEC--CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred eEEEEECCCcchhheec--CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence 45667655544333332 33446677888884 889999999999954300000
Q ss_pred ------------------------cCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC
Q 046899 69 ------------------------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG 124 (407)
Q Consensus 69 ------------------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~ 124 (407)
............+|.+.|.+++|+| +++++++|+.||.|++||+.++.....+.+
T Consensus 802 ~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 880 (1249)
T 3sfz_A 802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRG 880 (1249)
T ss_dssp CCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCC
Confidence 0000011112237999999999999 889999999999999999998877777666
Q ss_pred cCCCCCCC--------------CCcEEEEeccccccc---------------------------------------cccC
Q 046899 125 AADSHPDL--------------DQSVVLWSIQDHVSA---------------------------------------LAAE 151 (407)
Q Consensus 125 ~~~~~~~~--------------d~~i~~w~~~~~~~~---------------------------------------~~~~ 151 (407)
|...+... |+.+++|++...... ....
T Consensus 881 h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1249)
T 3sfz_A 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 960 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC
T ss_pred CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc
Confidence 65543222 899999997642110 0001
Q ss_pred CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899 152 PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA 231 (407)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 231 (407)
...+...........+++++.+|.+.+|+..+++....+.+|...|.+++|+|++ .+|++++.||.|++||+.++.
T Consensus 961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~--- 1036 (1249)
T 3sfz_A 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGD--- 1036 (1249)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTE---
T ss_pred cCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc---
Confidence 1122223334445568889999999999999999999999999999999999999 789999999999999999877
Q ss_pred eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
......|...|.++.|+| ++ .+++++.||.|++||+.+ ++.+..+.+|...|++++|+|+++++ ++++.|+
T Consensus 1037 ~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~s~d~ 1107 (1249)
T 3sfz_A 1037 YVFLQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVIT------GRIERDFTCHQGTVLSCAISSDATKF-SSTSADK 1107 (1249)
T ss_dssp EECCBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTT------TCCCEEEECCSSCCCCEEECSSSSSC-EEECCSS
T ss_pred eEEEecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCC------CceeEEEcccCCcEEEEEECCCCCEE-EEEcCCC
Confidence 335568999999999999 54 678899999999999998 88999999999999999999999976 6999999
Q ss_pred eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHH
Q 046899 312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA 391 (407)
Q Consensus 312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~ 391 (407)
+|++||+.+++....+.+|..+|++++|||| +..|++++.||+|+|||+. +++++.
T Consensus 1108 ~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d------------------g~~lat~~~dg~i~vwd~~------~~~~~~ 1163 (1249)
T 3sfz_A 1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLD------------------GILLATGDDNGEIRIWNVS------DGQLLH 1163 (1249)
T ss_dssp CCCEECSSSSSCSBCCCCCSSCEEEEEECSS------------------SSEEEEEETTSCCCEEESS------SSCCCC
T ss_pred cEEEEECCCcceeeeeccCCCcEEEEEECCC------------------CCEEEEEeCCCEEEEEECC------CCceEE
Confidence 9999999999999999999999999999999 8899999999999999998 444443
Q ss_pred H---------HhhcccceeEeeccC
Q 046899 392 E---------LDKFKSHIFGCDKSC 407 (407)
Q Consensus 392 ~---------~~~h~~~v~~~~~s~ 407 (407)
. ..+|.+.|++++||+
T Consensus 1164 ~~~~~~~~~~~~~~~~~v~~l~fs~ 1188 (1249)
T 3sfz_A 1164 SCAPISVEEGTATHGGWVTDVCFSP 1188 (1249)
T ss_dssp CCCCCC-------CCSCCCEEEECT
T ss_pred EeccccccccccccCceEEEEEECC
Confidence 3 478999999999986
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-33 Score=264.28 Aligned_cols=315 Identities=16% Similarity=0.249 Sum_probs=250.7
Q ss_pred hhhhhccCceEEEeeeecccCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC
Q 046899 16 YTQWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ 94 (407)
Q Consensus 16 ~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 94 (407)
..+|+...+.....+..|.-. ....+.+.+ .+++++.|+.+++|- ... . .......+|.+.|.++.|+
T Consensus 100 ~~~w~~~~~~~~~~l~~h~~~-v~~~~~~~g~~l~sg~~dg~i~vwd---~~~---~--~~~~~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 100 DTNWRRGELKSPKVLKGHDDH-VITCLQFCGNRIVSGSDDNTLKVWS---AVT---G--KCLRTLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp HHHHHHSCCCCCEEEECSTTS-CEEEEEEETTEEEEEETTSCEEEEE---TTT---C--CEEEECCCCSSCEEEEEEE--
T ss_pred hhcccCCCcceeEEecccCCC-cEEEEEEcCCEEEEEECCCcEEEEE---CCC---C--cEEEEEcCCCCCEEEEEec--
Confidence 467887766544555444432 122344433 588999999999992 211 1 1223344799999999987
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------------CCcEEEEecccccc--ccccCCCCCccccc
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------------DQSVVLWSIQDHVS--ALAAEPGSAKSTAS 160 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------d~~i~~w~~~~~~~--~~~~~~~~~~~~~~ 160 (407)
+++|++|+.||+|++||+.+++....+.+|...+.+. |+++++||+.++.. .+..+...+..+..
T Consensus 169 -~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 169 -DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp -TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred -CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 4589999999999999999988777777766554332 99999999987643 33334444433333
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
....+++++.++.+++||..+++.+..+.+|...|.+++| ++ .++++++.||.|++||+++++ ....+..|..
T Consensus 248 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~ 320 (445)
T 2ovr_B 248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQS 320 (445)
T ss_dssp --CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC--EEEEECCCCS
T ss_pred --CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCC--EEEEEcCCcc
Confidence 3466888999999999999999999999999999999999 45 789999999999999999988 6778889999
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
.+.++.++ ++++++|+.||.|++||+++ ++++..+.. |...|++++|++ . ++++|+.||.|++||
T Consensus 321 ~v~~~~~~---~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 321 LTSGMELK---DNILVSGNADSTVKIWDIKT------GQCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWD 388 (445)
T ss_dssp CEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEE
T ss_pred cEEEEEEe---CCEEEEEeCCCeEEEEECCC------CcEEEEEccCCCCCCCEEEEEECC--C-EEEEEeCCCeEEEEE
Confidence 99998885 46999999999999999998 888888886 888999999964 4 457999999999999
Q ss_pred CCCCCccccc-----ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee----EEEeecc
Q 046899 318 HEKIGEKQDY-----GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV----LEIWRMI 379 (407)
Q Consensus 318 ~~~~~~~~~~-----~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~----i~iwd~~ 379 (407)
+.+++.+..+ ..+..+|++++|+|+ +..+++++.||+ |.|||+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 389 LKTGEFIRNLVTLESGGSGGVVWRIRASNT------------------KLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp TTTCCEEEEEEECTTGGGTCEEEEEEECSS------------------EEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCCceeeeeeccccCCCCceEEEEEecCC------------------EEEEEEcccCCCCccEEEEEECC
Confidence 9998888777 467788999999888 888999999997 9999997
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.8e-34 Score=262.86 Aligned_cols=269 Identities=12% Similarity=0.091 Sum_probs=213.7
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCCCCCCC--------------CCcEEEEecccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAADSHPDL--------------DQSVVLWSIQDH 144 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~ 144 (407)
.|.++|++++|+| ++++|++|+.|+.|++||+.+++ ....+.+|...+... |+.+++|++.+.
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 4999999999999 88999999999999999999876 566666665443222 899999999876
Q ss_pred cc----ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc---eee-EeecccCEEEEEECCCCCcEEEEEeCC
Q 046899 145 VS----ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA---RGK-YLGHEDTVEDVQFCPSSAQEFCSVGDD 216 (407)
Q Consensus 145 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~d 216 (407)
.. .+..+...+..+........+++++.++.+++||....+. ... ..+|...|.+++|+|++ .+|++++.|
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 163 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCD 163 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETT
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCC
Confidence 42 1233444444455555566789999999999999988763 222 34688999999999998 899999999
Q ss_pred CcEEEEEcC------------------CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 046899 217 SCLILWDAR------------------SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG 278 (407)
Q Consensus 217 g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~ 278 (407)
|.|++||++ .+. ....+..|...|.+++|+| ++++|++++.||.|++||+++ +
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~ 234 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGE--LMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK------K 234 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTC--EEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG------T
T ss_pred CCEEEEEcccccccccccccccccccchhh--heEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC------C
Confidence 999999965 333 5667778999999999999 899999999999999999998 8
Q ss_pred CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC--CC--cc------------------------------
Q 046899 279 SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK--IG--EK------------------------------ 324 (407)
Q Consensus 279 ~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~--~~--~~------------------------------ 324 (407)
+++..+..|..+|.+++|+|++. ++++| .|+.|++||++. ++ ..
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred ceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 89999999999999999999998 44566 899999999987 31 11
Q ss_pred ------ccc-ccCCCcccCCCCcCcchhccccceeeeeEeeCcc---ceeeeEEEeeeEEEeecc
Q 046899 325 ------QDY-GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG---RLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 325 ------~~~-~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~---~~i~~~~~d~~i~iwd~~ 379 (407)
..+ .+|..+|++++|++ ..+ ..|++++.||+|+|||+.
T Consensus 313 ~~~~~~~~~~~~h~~~v~~~~~~~-----------------~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNSVSQISVLS-----------------GGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp ------CCCSSSSSSCEEEEEEEE-----------------STTTSCSEEEEEETTSEEEEEEHH
T ss_pred cCccccccccccccCCcceeEEec-----------------CCCcceeeEEEecCCCceEEEEec
Confidence 112 25555555555432 225 899999999999999997
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.5e-34 Score=284.04 Aligned_cols=249 Identities=17% Similarity=0.287 Sum_probs=200.0
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-----ccccCcCCCCCCCCCcEEEEeccccccccccC
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-----HAVLGAADSHPDLDQSVVLWSIQDHVSALAAE 151 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~ 151 (407)
..+.+|.+.|++|+|+|+++++|+||+.|++|++||+.+.... ..+.+|.
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~------------------------- 430 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS------------------------- 430 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-------------------------
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC-------------------------
Confidence 3456899999999999977889999999999999999864321 1222232
Q ss_pred CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899 152 PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA 231 (407)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 231 (407)
..+..+........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.......
T Consensus 431 -~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 431 -HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEE
T ss_pred -CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCccee
Confidence 222222223334568889999999999999999999999999999999999999 789999999999999986543100
Q ss_pred -eeeecccCcceEEEEecCCCC--CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee
Q 046899 232 -VKVEKAHNADIHCVDWNPHDV--NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 232 -~~~~~~~~~~v~~l~~~~~~~--~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
.....+|...|.+++|+| ++ ..+++|+.|+.|++||++. .++...+.+|...|++++|+|++.+ |++|+
T Consensus 509 ~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~-l~sg~ 580 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSN------CKLRSTLAGHTGYVSTVAVSPDGSL-CASGG 580 (694)
T ss_dssp ECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSSE-EEEEE
T ss_pred eccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCC------CcEEEEEcCCCCCEEEEEEeCCCCE-EEEEe
Confidence 111246888999999999 54 6899999999999999998 7889999999999999999999995 47999
Q ss_pred CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 309 EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 309 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
.|++|++||+++++.+..+.. ...+.+++|+|+ +..++ ++.++.|+|||+..
T Consensus 581 ~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~------------------~~~l~-~~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN------------------RYWLC-AATEHGIKIWDLES 632 (694)
T ss_dssp TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS------------------SSEEE-EEETTEEEEEETTT
T ss_pred CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC------------------CcEEE-EEcCCCEEEEECCC
Confidence 999999999999887776654 456777888776 44444 45567799999974
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.7e-35 Score=270.06 Aligned_cols=267 Identities=12% Similarity=0.128 Sum_probs=218.2
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC------CcccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP------NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~ 152 (407)
+.+|.+.|++++|+| ++|++|+.||.|++||+.+.+ ....+.+|...+ . .
T Consensus 12 ~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v-------~---------~----- 67 (397)
T 1sq9_A 12 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL-------H---------H----- 67 (397)
T ss_dssp SSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCE-------E---------E-----
T ss_pred hhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcE-------E---------E-----
Confidence 347999999999987 699999999999999999876 333333332211 0 0
Q ss_pred CCCccccc-CCCC---CccccccCCCCCCCCCCCCcCc-----eeeEeec-----ccCEEEEEEC----CCCCcE-EEEE
Q 046899 153 GSAKSTAS-GGAN---SKNASKSGGNGDKPLESPSIGA-----RGKYLGH-----EDTVEDVQFC----PSSAQE-FCSV 213 (407)
Q Consensus 153 ~~~~~~~~-~~~~---~~~~~~~~~~~i~i~d~~~~~~-----~~~~~~~-----~~~v~~l~~~----~~~~~~-l~s~ 213 (407)
+.+.+. .... ..+++++.++.+++|++..++. +..+..| ...|.+++|+ |++ .+ |+++
T Consensus 68 --~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~ 144 (397)
T 1sq9_A 68 --VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVAT 144 (397)
T ss_dssp --EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEE
T ss_pred --EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEE
Confidence 011111 0002 3577888999999999998887 8888888 5899999999 988 77 9999
Q ss_pred eCCCcEEEEEcCC------CCCCcee-----ee-------cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 046899 214 GDDSCLILWDARS------GSTPAVK-----VE-------KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD 275 (407)
Q Consensus 214 ~~dg~i~iwd~~~------~~~~~~~-----~~-------~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~ 275 (407)
+.||.|++||+++ +.. .. .+ ..|...|.+++|+| ++ +|++|+.||.|++||++.
T Consensus 145 ~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~---- 216 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADESNSLT--LNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELST---- 216 (397)
T ss_dssp ETTSCEEEEEEESSSSHHHHTT--TCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTT----
T ss_pred eCCCcEEEEeCCccccccccce--eeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCC----
Confidence 9999999999998 552 32 44 45889999999999 77 999999999999999998
Q ss_pred CCCCceeeecC---C---CCCEEEEEEcCCCCCEEEEeeCC---CeEEEEeCCCCCccccccc-------------CCCc
Q 046899 276 GVGSPIHKFEG---H---SAAVLCVQWSPDKSSVFGSSAED---GILNIWDHEKIGEKQDYGE-------------LKYP 333 (407)
Q Consensus 276 ~~~~~~~~~~~---h---~~~v~~v~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~~~~~~~-------------~~~~ 333 (407)
++++..+.. | ...|.+++|+|++.+| ++++.| +.|++||+++.+.+..+.. |..+
T Consensus 217 --~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l-~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 217 --LRPLYNFESQHSMINNSNSIRSVKFSPQGSLL-AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp --TEEEEEEECCC---CCCCCEEEEEECSSTTEE-EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred --CceeEEEeccccccccCCccceEEECCCCCEE-EEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence 789999998 9 9999999999999965 699999 9999999999988888888 8899
Q ss_pred ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh------hc-----------
Q 046899 334 IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD------KF----------- 396 (407)
Q Consensus 334 v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~h----------- 396 (407)
|++++|+|+ +..|++++.|+.|+|||+. +++++..+. +|
T Consensus 294 v~~~~~~~~------------------~~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 294 VMSLSFNDS------------------GETLCSAGWDGKLRFWDVK------TKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEEEECSS------------------SSEEEEEETTSEEEEEETT------TTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred EEEEEECCC------------------CCEEEEEeCCCeEEEEEcC------CCceeEEEecccCcccchhhhhcccccc
Confidence 999999888 8899999999999999998 677777788 77
Q ss_pred ----ccceeEeeccC
Q 046899 397 ----KSHIFGCDKSC 407 (407)
Q Consensus 397 ----~~~v~~~~~s~ 407 (407)
...|++++|++
T Consensus 350 ~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 350 DSLAEPGVFDVKFLK 364 (397)
T ss_dssp CBCSSCCEEEEEEEC
T ss_pred ccccCCceeEEEecc
Confidence 99999999985
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7e-34 Score=268.00 Aligned_cols=283 Identities=15% Similarity=0.246 Sum_probs=232.8
Q ss_pred EEEeeCCCce-EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------------CCcEEEEeccc
Q 046899 77 FKTIIHPGEV-NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------------DQSVVLWSIQD 143 (407)
Q Consensus 77 ~~~~~h~~~v-~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------d~~i~~w~~~~ 143 (407)
..+.+|.+.| .++. + ++++|++|+.||+|++||+.+++....+.+|...+... |++|++||+.+
T Consensus 112 ~~l~~h~~~v~~~~~--~-~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQ--F-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp EEEECSTTSCEEEEE--E-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred EEecccCCCcEEEEE--E-cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCc
Confidence 3455899875 5554 4 57899999999999999999998888777776554332 99999999987
Q ss_pred cccc--cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEE
Q 046899 144 HVSA--LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLIL 221 (407)
Q Consensus 144 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~i 221 (407)
+... +..+...+..+.. ....+++++.++.+++||..+++.+..+.+|...|.+++| ++ .++++|+.||.|++
T Consensus 189 ~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKV 263 (445)
T ss_dssp TEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEE
T ss_pred CcEEEEECCCCCcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEE
Confidence 7443 3334433333332 2356888999999999999999999999999999999999 44 68999999999999
Q ss_pred EEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC
Q 046899 222 WDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 222 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 301 (407)
||+++++ ....+..|...|.+++| ++.++++|+.||.|++||+++ ++++..+.+|...+.++.++ +.
T Consensus 264 wd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~v~~~~~~--~~ 330 (445)
T 2ovr_B 264 WDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQSLTSGMELK--DN 330 (445)
T ss_dssp EEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEEECCCCSCEEEEEEE--TT
T ss_pred EECCCCc--EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCC------CCEEEEEcCCcccEEEEEEe--CC
Confidence 9999887 67788899999999999 568999999999999999999 89999999999999999885 44
Q ss_pred CEEEEeeCCCeEEEEeCCCCCccccccc---CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 302 SVFGSSAEDGILNIWDHEKIGEKQDYGE---LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
++++|+.||.|++||+++++.+..+.. |..+|++++|+ +..+++++.||.|+|||+
T Consensus 331 -~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 331 -ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--------------------KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp -EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--------------------SSEEEEEETTSEEEEEET
T ss_pred -EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--------------------CCEEEEEeCCCeEEEEEC
Confidence 457999999999999999888877765 56666555552 567999999999999999
Q ss_pred cccccCChHHHHHHH-----hhcccceeEeeccC
Q 046899 379 IDLIYRPEEEVLAEL-----DKFKSHIFGCDKSC 407 (407)
Q Consensus 379 ~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~ 407 (407)
. +++.+..+ .+|.+.|++++||+
T Consensus 390 ~------~~~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 390 K------TGEFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp T------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred C------CCceeeeeeccccCCCCceEEEEEecC
Confidence 8 66666666 58899999999985
No 65
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.6e-34 Score=260.93 Aligned_cols=274 Identities=16% Similarity=0.247 Sum_probs=213.8
Q ss_pred eCCCceEEEEEeCC---CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 81 IHPGEVNRIRELPQ---NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 81 ~h~~~v~~l~~~~~---~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
+|.++|++++|+|. ...++++++.++.|++||+.++.....+..+..... ++.+.- ..+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~--~~~v~~----------------~~~ 77 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA--DENFYT----------------CAW 77 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCT--TCCEEE----------------EEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCC--CCcEEE----------------EEe
Confidence 69999999999983 344555666667999999997766555443322100 111110 111
Q ss_pred cccCCC-CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899 158 TASGGA-NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 158 ~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 235 (407)
.+.+.. ...+++++.++.+++||..+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++||+++++ ....+
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~ 154 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDT--LVAIF 154 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTE--EEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCe--EEEEe
Confidence 112111 23578899999999999999999999999999999999999 66 899999999999999999887 45555
Q ss_pred ---cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee----------------------------e
Q 046899 236 ---KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK----------------------------F 284 (407)
Q Consensus 236 ---~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~----------------------------~ 284 (407)
..|...|.+++|+| ++++|++++.||.|++||++. ++.+.. .
T Consensus 155 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS------KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp CSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCS------HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred cccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCC------CccccccceeEEecCCCCcccccceeeccCccccc
Confidence 68999999999999 899999999999999999987 443333 3
Q ss_pred cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc--------------ccccccCCCcccCCCCcCcchhccccc
Q 046899 285 EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE--------------KQDYGELKYPIIHPAYSSDMLDIETKL 350 (407)
Q Consensus 285 ~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--------------~~~~~~~~~~v~~~~~s~d~~~~~~~~ 350 (407)
..|...|.+++|+ +. ++++++.|+.|++||+++... +..+..|..+|++++|+|+.
T Consensus 228 ~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------- 297 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF------- 297 (366)
T ss_dssp SSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT-------
T ss_pred cCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC-------
Confidence 3499999999998 55 457999999999999988755 55667788889999998761
Q ss_pred eeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHH----HHhhc--ccceeEeeccC
Q 046899 351 LTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA----ELDKF--KSHIFGCDKSC 407 (407)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~h--~~~v~~~~~s~ 407 (407)
.+..|++++.|+.|+|||+. .++++. .+.+| ...|++++||+
T Consensus 298 ---------~~~~l~~~~~dg~i~vwd~~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 298 ---------WQKMLALGNQVGKLYVWDLE------VEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp ---------TSSEEEEECTTSCEEEEECC------SSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred ---------CCcEEEEEecCCcEEEEECC------CCCCccccceEEcccccCCceEEEEeCC
Confidence 26689999999999999998 455444 67777 79999999985
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.7e-34 Score=277.52 Aligned_cols=337 Identities=12% Similarity=0.082 Sum_probs=259.5
Q ss_pred hhhhhhhccCceEEEeeeeccc-CCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEe-----eCC
Q 046899 14 DRYTQWKSLVPVLYDWLANHNL-VWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTI-----IHP 83 (407)
Q Consensus 14 ~~~~~w~~~~~~~y~~l~~~~~-~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~h~ 83 (407)
..+.+|+.........+..+.. .-+..++.|.|+ +++++.++.+++|- .........+ +|.
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd---------~~~~~~~~~~~~~~~~~~ 253 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD---------GKSGEFLKYIEDDQEPVQ 253 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE---------TTTCCEEEECCBTTBCCC
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE---------CCCCCEeEEecccccccC
Confidence 3456676555444333332222 115667889876 77889999999992 1222334444 799
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCC-----------------CCCCcEEEEecccccc
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHP-----------------DLDQSVVLWSIQDHVS 146 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~d~~i~~w~~~~~~~ 146 (407)
+.|.+++|+ ++++|++++.||.|++||+.+++....+..+..... ..++.+.+|++.....
T Consensus 254 ~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 254 GGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp SCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred CceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 999999998 788999999999999999998876655544421111 0189999999987533
Q ss_pred --ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 046899 147 --ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDA 224 (407)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 224 (407)
.+..+...+..+.. .. +++++.++.+++|+.. .+. .+|...|.+++| +.+ ..|++++.|+.|++||+
T Consensus 332 ~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~---~~~--~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~ 400 (615)
T 1pgu_A 332 LKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS---SMH--QDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGI 400 (615)
T ss_dssp EEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT---EEE--CCCCSCEEEEEC-CST-TCCEEEETTTEEEETTE
T ss_pred EEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch---hhc--CcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEc
Confidence 33344444444444 32 8899999999999998 333 689999999999 445 57999999999999998
Q ss_pred CCCCC--------------------------------CceeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCC
Q 046899 225 RSGST--------------------------------PAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRK 271 (407)
Q Consensus 225 ~~~~~--------------------------------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~ 271 (407)
++... .....+ .+...+.+++|+ +.++++++. ||.|++||+..
T Consensus 401 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~ 476 (615)
T 1pgu_A 401 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSD 476 (615)
T ss_dssp EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTE
T ss_pred ccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc---CCEEEEeecCCCeEEEEECCC
Confidence 64220 022222 477889999998 679999999 99999999997
Q ss_pred CCCCCCCCce-eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcC--------
Q 046899 272 LTSDGVGSPI-HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSS-------- 341 (407)
Q Consensus 272 ~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~-------- 341 (407)
++.. ..+..|...|++++|+|++++| ++++.|+.|++||+.+++.+..+.+ |..+|++++|+|
T Consensus 477 ------~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 477 ------LEVSFDLKTPLRAKPSYISISPSETYI-AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549 (615)
T ss_dssp ------EEEEEECSSCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred ------ccccccccCCccCceEEEEECCCCCEE-EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence 4444 6778899999999999999965 7999999999999999999888888 999999999999
Q ss_pred --cchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChH-HHHHHHhhcccceeEeeccC
Q 046899 342 --DMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEE-EVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 342 --d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~ 407 (407)
+ +..|++++.|++|+|||+. ++ +++..+.+|...|++++||+
T Consensus 550 ~~~------------------~~~l~~~~~dg~i~iw~~~------~~~~~~~~~~~h~~~v~~l~~s~ 594 (615)
T 1pgu_A 550 EIE------------------EDLVATGSLDTNIFIYSVK------RPMKIIKALNAHKDGVNNLLWET 594 (615)
T ss_dssp CCS------------------CCEEEEEETTSCEEEEESS------CTTCCEEETTSSTTCEEEEEEEE
T ss_pred ccC------------------CCEEEEEcCCCcEEEEECC------CCceechhhhcCccceEEEEEcC
Confidence 6 8899999999999999998 44 67778999999999999984
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=259.88 Aligned_cols=285 Identities=14% Similarity=0.151 Sum_probs=216.8
Q ss_pred CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC---CCcEEEEeCcCCCCccccc-CcCCCCCCCCCcEEEEecccccc
Q 046899 71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD---SPDVLIWDVEAQPNRHAVL-GAADSHPDLDQSVVLWSIQDHVS 146 (407)
Q Consensus 71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~~~~~~~~-~~~~~~~~~d~~i~~w~~~~~~~ 146 (407)
.|.+......+|.+.|++++|+|++..++++|+. ||.|++||+.+++...... +|.. ...
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~----------------~v~ 69 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK----------------PIK 69 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS----------------CEE
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC----------------cEE
Confidence 3445555556799999999999955577788877 9999999998765432211 1111 111
Q ss_pred ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-ceeeEeecccCEEEEEE------CCCCCcEEEEEeCCCcE
Q 046899 147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-ARGKYLGHEDTVEDVQF------CPSSAQEFCSVGDDSCL 219 (407)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~v~~l~~------~~~~~~~l~s~~~dg~i 219 (407)
.+.+.+ .+.....+++++.++.+++||...++ .+..+.+|...|.+++| +|++ .+|++++.||.|
T Consensus 70 ~~~~~~-------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i 141 (357)
T 3i2n_A 70 CGTFGA-------TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTV 141 (357)
T ss_dssp EEECTT-------CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCE
T ss_pred EEEEcC-------CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeE
Confidence 111111 21113568889999999999999988 88899999999999954 6777 799999999999
Q ss_pred EEEEcCCCCCCceeeecccCc----ceEEEE----ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCE
Q 046899 220 ILWDARSGSTPAVKVEKAHNA----DIHCVD----WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV 291 (407)
Q Consensus 220 ~iwd~~~~~~~~~~~~~~~~~----~v~~l~----~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v 291 (407)
++||++++..+ ...+..|.. .+.+++ |+| ++++|++|+.||.|++||++. ++... ...|...|
T Consensus 142 ~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~~~-~~~~~~~v 212 (357)
T 3i2n_A 142 KVWDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRN------MALRW-ETNIKNGV 212 (357)
T ss_dssp EEECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTT------TEEEE-EEECSSCE
T ss_pred EEEeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECcc------Cceee-ecCCCCce
Confidence 99999987632 444444443 788998 778 899999999999999999998 55544 45688999
Q ss_pred EEEEEcC---CCCCEEEEeeCCCeEEEEeCCCCCcccccc-----cCCCcccCCCCcCcchhccccceeeeeEeeCccc-
Q 046899 292 LCVQWSP---DKSSVFGSSAEDGILNIWDHEKIGEKQDYG-----ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR- 362 (407)
Q Consensus 292 ~~v~~~~---~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~- 362 (407)
.+++|+| ++.++ ++++.||.|++||+++.+....+. +|..+|++++|+|+ +.
T Consensus 213 ~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~ 273 (357)
T 3i2n_A 213 CSLEFDRKDISMNKL-VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ------------------NRE 273 (357)
T ss_dssp EEEEESCSSSSCCEE-EEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT------------------EEE
T ss_pred EEEEcCCCCCCCCEE-EEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC------------------CCc
Confidence 9999999 88855 699999999999999877776665 88999999999888 55
Q ss_pred eeeeEEEeeeEEEeeccccccCC-------------hHHHHHHHhhcccceeEeeccC
Q 046899 363 LLVCLTMVKVLEIWRMIDLIYRP-------------EEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 363 ~i~~~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.+++++.|+.|+|||+....... ..+++..+.+|.+.|++++||+
T Consensus 274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP 331 (357)
T ss_dssp EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence 79999999999999997422110 1135667889999999999985
No 68
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.4e-33 Score=260.83 Aligned_cols=281 Identities=19% Similarity=0.303 Sum_probs=218.0
Q ss_pred EeeeecccCCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEee
Q 046899 28 DWLANHNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHT 103 (407)
Q Consensus 28 ~~l~~~~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~ 103 (407)
+-+......|..-.+.+.|. +++++.++.+++| ++....... .......+|.+.|++++|+|.++++|++|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~---~~~~~~~~~-~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s 101 (402)
T 2aq5_A 26 EDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVL---PLGKTGRVD-KNVPLVCGHTAPVLDIAWCPHNDNVIASGS 101 (402)
T ss_dssp ESCCBCCCCCSSCSEEECSSEEEEEBCCSSSCCEEEE---ETTCCEECC-TTCCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred ecceeecCccCCCcEEECCCeEEEEEEEcCCCEEEEE---ECccCCCCC-CCCceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence 33334455677666777774 4467889999999 332221110 112223479999999999997788999999
Q ss_pred CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899 104 DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS 183 (407)
Q Consensus 104 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 183 (407)
.||+|++||+.++..... .
T Consensus 102 ~dg~v~vw~~~~~~~~~~-------------------------------------------------------------~ 120 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLP-------------------------------------------------------------L 120 (402)
T ss_dssp TTSEEEEEECCTTCCSSC-------------------------------------------------------------B
T ss_pred CCCeEEEEEccCCCCccc-------------------------------------------------------------c
Confidence 999999999986532211 1
Q ss_pred cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEEeCC
Q 046899 184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTGSAD 261 (407)
Q Consensus 184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg~~d 261 (407)
.+++..+.+|...|.+++|+|++.++|++++.||.|++||+++++ ....+ ..|...|.+++|+| ++++|++++.|
T Consensus 121 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 197 (402)
T 2aq5_A 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRD 197 (402)
T ss_dssp CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECT-TSSCEEEEETT
T ss_pred CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECC-CCCEEEEEecC
Confidence 134567778999999999999986799999999999999999887 56666 78999999999999 99999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeee-cCCCCC-EEEEEEcCCCCCEEEEe---eCCCeEEEEeCCCCCccc-ccc-cCCCcc
Q 046899 262 NSIHMFDRRKLTSDGVGSPIHKF-EGHSAA-VLCVQWSPDKSSVFGSS---AEDGILNIWDHEKIGEKQ-DYG-ELKYPI 334 (407)
Q Consensus 262 g~i~vwd~~~~~~~~~~~~~~~~-~~h~~~-v~~v~~~~~~~~ll~s~---~~d~~i~vwd~~~~~~~~-~~~-~~~~~v 334 (407)
|.|++||+++ ++.+..+ ..|.+. +.+++|+|++.+ |++| +.|+.|++||+++.+... ... .+...+
T Consensus 198 ~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 198 KRVRVIEPRK------GTVVAEKDRPHEGTRPVHAVFVSEGKI-LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp SEEEEEETTT------TEEEEEEECSSCSSSCCEEEECSTTEE-EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred CcEEEEeCCC------CceeeeeccCCCCCcceEEEEcCCCcE-EEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 9999999998 7888888 788776 999999999984 5688 789999999999876532 222 456667
Q ss_pred cCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeeccccccCChHHH-HHHHhhc--ccceeEeeccC
Q 046899 335 IHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMIDLIYRPEEEV-LAELDKF--KSHIFGCDKSC 407 (407)
Q Consensus 335 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~h--~~~v~~~~~s~ 407 (407)
..++|+|+ +..++ +++.|+.|++||+. +++. +..+.+| ...|.+++|++
T Consensus 271 ~~~~~s~~------------------~~~l~~~g~~dg~i~i~d~~------~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 271 LLPFFDPD------------------TNIVYLCGKGDSSIRYFEIT------SEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp EEEEEETT------------------TTEEEEEETTCSCEEEEEEC------SSTTCEEEEEEECCSSCCSEEEECC
T ss_pred eEEEEcCC------------------CCEEEEEEcCCCeEEEEEec------CCCcceEeecccccCCcccceEEec
Confidence 78888877 66665 56679999999998 4443 4455555 48899999985
No 69
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=245.30 Aligned_cols=279 Identities=16% Similarity=0.308 Sum_probs=218.1
Q ss_pred EEEEeec-ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc
Q 046899 41 SCRWGPQ-LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR 119 (407)
Q Consensus 41 s~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~ 119 (407)
.++|.+. +...+.|++++||- . + ...........+|...|++++|+| ++++||+|+.||+|++||+.+++..
T Consensus 30 ~l~WS~~~~lAvg~D~tV~iWd---~--~-tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 30 LVDWSSGNVLAVALDNSVYLWS---A--S-SGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CEEECTTSEEEEEETTEEEEEE---T--T-TCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCEEEEEeCCEEEEEE---C--C-CCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeE
Confidence 3678763 33445689999992 1 1 122233444457889999999999 8899999999999999999998877
Q ss_pred ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCc-CceeeEeecccCEE
Q 046899 120 HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSI-GARGKYLGHEDTVE 198 (407)
Q Consensus 120 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~ 198 (407)
..+.+|... +..+... ...+++++.++.+++|+.... ..+..+.+|...+.
T Consensus 103 ~~~~~h~~~-------~~~~~~~---------------------~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 103 RNMTSHSAR-------VGSLSWN---------------------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp EEEECCSSC-------EEEEEEE---------------------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEecCccce-------EEEeecC---------------------CCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence 776665432 1111111 123666778888888877654 45567788999999
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecCCCCCEE--EEEeCCCcEEEEeCCCCCC
Q 046899 199 DVQFCPSSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNPHDVNLI--LTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l--~tg~~dg~i~vwd~~~~~~ 274 (407)
++.+++++ .+|++++.|+.|++||+++++.. .......+...|.++.++|.+...+ ++++.++.|++||.+.
T Consensus 155 ~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~--- 230 (318)
T 4ggc_A 155 GLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--- 230 (318)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT---
T ss_pred EEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc---
Confidence 99999999 89999999999999999986521 2345567788999999999666655 4667889999999988
Q ss_pred CCCCCceeeecCCCCCEEEEEEcCCCCCEEEE-eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceee
Q 046899 275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS-SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS 353 (407)
Q Consensus 275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 353 (407)
....... .+...+..+.|+|++..++++ |+.|+.|++||+++++.+..+.+|..+|++++|+||
T Consensus 231 ---~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd----------- 295 (318)
T 4ggc_A 231 ---GACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD----------- 295 (318)
T ss_dssp ---CCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------
T ss_pred ---ccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-----------
Confidence 5555444 467789999999999977533 347999999999999999999999999999999999
Q ss_pred eeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 354 IGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 354 ~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+..|++++.|++|+|||+.+
T Consensus 296 -------g~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 296 -------GATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -------SSCEEEEETTTEEEEECCSC
T ss_pred -------CCEEEEEecCCeEEEEECCC
Confidence 88999999999999999973
No 70
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-33 Score=256.53 Aligned_cols=252 Identities=18% Similarity=0.207 Sum_probs=203.1
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC--CCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA--QPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
+.+|.+.|++++|+| ++++||+|+.||.|++||+.. ......+.+|... | .
T Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-------v-------------------~ 59 (379)
T 3jrp_A 7 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP-------V-------------------W 59 (379)
T ss_dssp EEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------E-------------------E
T ss_pred ecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc-------E-------------------E
Confidence 348999999999999 889999999999999999973 3333344444322 1 1
Q ss_pred ccccCC--CCCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 157 STASGG--ANSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
.+.... ....+++++.|+.+++||+..++ .+..+..|...|.+++|+|+ + .+|++++.|+.|++||+++....
T Consensus 60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCC
T ss_pred EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCce
Confidence 111111 13457889999999999998886 67777889999999999998 7 89999999999999999988544
Q ss_pred ceeeecccCcceEEEEecCC------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899 231 AVKVEKAHNADIHCVDWNPH------------DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP 298 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~------------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 298 (407)
....+..|...|.+++|+|. ++.+|++|+.||.|++||++..... ..+...+.+|...|.+++|+|
T Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECC
T ss_pred eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECC
Confidence 55667789999999999995 4899999999999999999872210 124567888999999999999
Q ss_pred C---CCCEEEEeeCCCeEEEEeCCCCC-----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe
Q 046899 299 D---KSSVFGSSAEDGILNIWDHEKIG-----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV 370 (407)
Q Consensus 299 ~---~~~ll~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d 370 (407)
+ +. +|++++.||.|++||++... .......+..+|++++|+|+ +..|++++.|
T Consensus 217 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------g~~l~~~~~d 277 (379)
T 3jrp_A 217 TVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------------------GNVLALSGGD 277 (379)
T ss_dssp CCSSSE-EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS------------------SCCEEEEESS
T ss_pred CCCCCC-eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC------------------CCEEEEecCC
Confidence 9 66 55799999999999999864 23334457788899999988 8899999999
Q ss_pred eeEEEeecc
Q 046899 371 KVLEIWRMI 379 (407)
Q Consensus 371 ~~i~iwd~~ 379 (407)
+.|+||++.
T Consensus 278 g~i~iw~~~ 286 (379)
T 3jrp_A 278 NKVTLWKEN 286 (379)
T ss_dssp SSEEEEEEE
T ss_pred CcEEEEeCC
Confidence 999999987
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-32 Score=248.97 Aligned_cols=272 Identities=13% Similarity=0.185 Sum_probs=205.1
Q ss_pred ccCCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899 34 NLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL 109 (407)
Q Consensus 34 ~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~ 109 (407)
++.-+..++.|.|+ ++|++.|+.+++| ++.............+.+|.+.|.+++|+| ++++|++|+.|+.|+
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vW---d~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMW---KLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLR 111 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEE---EECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEE---ECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccce
Confidence 35567888899873 7899999999999 333332233333445568999999999999 899999999999999
Q ss_pred EEeCcCCCCcccccCcCCCC------C--------CCCCcEEEEecccccccc---ccCCCCCcccccC--CCCCccccc
Q 046899 110 IWDVEAQPNRHAVLGAADSH------P--------DLDQSVVLWSIQDHVSAL---AAEPGSAKSTASG--GANSKNASK 170 (407)
Q Consensus 110 vwd~~~~~~~~~~~~~~~~~------~--------~~d~~i~~w~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~ 170 (407)
+|+............+.... + ..|+.+++|++....... ..+...+...... .....++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence 99998765443332221111 0 118999999987653322 2222232222222 223456778
Q ss_pred cCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899 171 SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250 (407)
Q Consensus 171 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~ 250 (407)
+.++.+++||..+++.+..+.+|...|++++|+|++ .+|++|+.||.|++||+++.+ ....+ .+...+.++.|+|
T Consensus 192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~- 266 (340)
T 4aow_A 192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGK--HLYTL-DGGDIINALCFSP- 266 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE--EEEEE-ECSSCEEEEEECS-
T ss_pred cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCc--eeeee-cCCceEEeeecCC-
Confidence 899999999999999999999999999999999999 899999999999999999877 45554 4557899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee---------cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF---------EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
++. +++++.|+.|++||++. ...+..+ .+|...|++++|+|++++| ++|+.||.|+|||++++
T Consensus 267 ~~~-~~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 267 NRY-WLCAATGPSIKIWDLEG------KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp SSS-EEEEEETTEEEEEETTT------TEEEEEECCC-------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEEC-
T ss_pred CCc-eeeccCCCEEEEEECCC------CeEEEeccccceeeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCCCc
Confidence 665 45666799999999987 4444443 4688999999999999965 69999999999999987
Q ss_pred C
Q 046899 322 G 322 (407)
Q Consensus 322 ~ 322 (407)
+
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 5
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-34 Score=262.00 Aligned_cols=249 Identities=12% Similarity=0.119 Sum_probs=191.4
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC--CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ--PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
.|.++|++++|+| ++++||+|+.|+.|++||+.++ +....+.+|... | ..+
T Consensus 9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~-------v-------------------~~~ 61 (377)
T 3dwl_C 9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI-------V-------------------TCV 61 (377)
T ss_dssp ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC-------E-------------------EEE
T ss_pred cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce-------E-------------------EEE
Confidence 4778999999999 8899999999999999999976 455555554332 1 111
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcC---ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-Cceee
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIG---ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-PAVKV 234 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~ 234 (407)
........+++++.|+.+++||+..++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++. .....
T Consensus 62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp EECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeE
Confidence 122223458889999999999998877 667777899999999999998 7999999999999999998752 12455
Q ss_pred ecc-cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC------------CCCceeeecCCCCCEEEEEEcCCCC
Q 046899 235 EKA-HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG------------VGSPIHKFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 235 ~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~------------~~~~~~~~~~h~~~v~~v~~~~~~~ 301 (407)
+.. |...|.+++|+| ++++|++|+.||.|++||++...... .++++..+ .|...|++++|+|+++
T Consensus 141 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp ECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred eecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 556 999999999999 89999999999999999986321100 03456666 8999999999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCCCc----ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899 302 SVFGSSAEDGILNIWDHEKIGE----KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR 377 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd 377 (407)
+| ++++.|+.|++||+++++. +..+..|..+|++++|+|+ +..|++++.++.+ +|+
T Consensus 219 ~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 219 AL-AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE------------------SAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp CE-EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET------------------TEEEEEESSSSEE-EEC
T ss_pred EE-EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC------------------CCEEEEEcCCcEE-EEE
Confidence 65 6999999999999999888 7888899999999999888 7788888766555 666
Q ss_pred cc
Q 046899 378 MI 379 (407)
Q Consensus 378 ~~ 379 (407)
..
T Consensus 279 ~~ 280 (377)
T 3dwl_C 279 GN 280 (377)
T ss_dssp CC
T ss_pred eC
Confidence 64
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.3e-33 Score=256.61 Aligned_cols=282 Identities=15% Similarity=0.138 Sum_probs=213.6
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccccc-------------CcCCCC------C-CC-------
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL-------------GAADSH------P-DL------- 132 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-------------~~~~~~------~-~~------- 132 (407)
.+|.+.|++++|+|.++++|++|+.||.|++||+.+......+. +|...+ + +.
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 36999999999999778899999999999999999876554432 232221 1 11
Q ss_pred -CCcEEEEecccccccccc-CCCC---CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC
Q 046899 133 -DQSVVLWSIQDHVSALAA-EPGS---AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA 207 (407)
Q Consensus 133 -d~~i~~w~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~ 207 (407)
|+.+++||+.+....... .... ..+.+.+.....+++++.++.+++||+.+++.+..+.+|...|.+++|+|++.
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence 899999999876443222 2222 23333444445788899999999999999999999999999999999999995
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeee---------------cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVE---------------KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 272 (407)
.+|++++.||.|++||+++.... ...+ ..|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~- 276 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSN- 276 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-
T ss_pred cEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCC-
Confidence 57999999999999999876532 2222 57889999999999 999999999999999999998
Q ss_pred CCCCCCCceeeecCC-----CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcc
Q 046899 273 TSDGVGSPIHKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIE 347 (407)
Q Consensus 273 ~~~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~ 347 (407)
++....+..+ ...+........+..+ ++++.|+.|++||+.+++.+..+.+|..+|++++|+|+
T Consensus 277 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~----- 345 (408)
T 4a11_B 277 -----GENTLVNYGKVCNNSKKGLKFTVSCGCSSEF-VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN----- 345 (408)
T ss_dssp -----CCBCCCCCCCCCCCCSSCCCCEECCSSSSCE-EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT-----
T ss_pred -----CccceeccccccccccccceeEEecCCCceE-EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC-----
Confidence 5544443322 1122222222333434 57788999999999999999999999999999999998
Q ss_pred ccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 348 TKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 348 ~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
+..|++++.||.|+|||+. +++++....
T Consensus 346 -------------~~~l~s~~~dg~i~iw~~~------~~~~~~~~~ 373 (408)
T 4a11_B 346 -------------FQELYSGSRDCNILAWVPS------LYEPVPDDD 373 (408)
T ss_dssp -------------TTEEEEEETTSCEEEEEEC------C--------
T ss_pred -------------CCEEEEECCCCeEEEEeCC------CCCccCCCC
Confidence 8899999999999999998 555554443
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.7e-32 Score=256.40 Aligned_cols=288 Identities=19% Similarity=0.319 Sum_probs=224.9
Q ss_pred hhhhhccCceEEEeeeecccCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC
Q 046899 16 YTQWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ 94 (407)
Q Consensus 16 ~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 94 (407)
.++|+.....+..+.......-+...+++.. .+++++.|+.+++|.. . . ........+|.+.|.+++|
T Consensus 113 ~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~---~--~---~~~~~~~~~h~~~v~~l~~--- 181 (435)
T 1p22_A 113 ESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK---N--T---LECKRILTGHTGSVLCLQY--- 181 (435)
T ss_dssp HHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEES---S--S---CCEEEEECCCSSCEEEEEC---
T ss_pred HhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeC---C--C---CeEEEEEcCCCCcEEEEEE---
Confidence 4677766544333333333444555666644 4889999999999921 1 1 1123344579999999997
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN 174 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (407)
++++|++|+.||+|++||+.+++....+.+|... +.-.... ...+++++.++
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-------v~~l~~~---------------------~~~l~s~s~dg 233 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-------VLHLRFN---------------------NGMMVTCSKDR 233 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-------EEEEECC---------------------TTEEEEEETTS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc-------EEEEEEc---------------------CCEEEEeeCCC
Confidence 5679999999999999999988777666555332 1111110 13578889999
Q ss_pred CCCCCCCCCcCce---eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899 175 GDKPLESPSIGAR---GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 175 ~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
.+++||..+++.. ..+.+|...|.+++| ++ .++++|+.||.|++||+++++ ....+..|...|.++.++
T Consensus 234 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~--- 305 (435)
T 1p22_A 234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR--- 305 (435)
T ss_dssp CEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---
T ss_pred cEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeC---
Confidence 9999999887766 667789999999999 44 789999999999999999988 678888999999999995
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC---------
Q 046899 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG--------- 322 (407)
Q Consensus 252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~--------- 322 (407)
++++++|+.||.|++||+++ ++++.++.+|...|.+++| ++.+ +++|+.||.|++||+.+..
T Consensus 306 ~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~--~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 376 (435)
T 1p22_A 306 DRLVVSGSSDNTIRLWDIEC------GACLRVLEGHEELVRCIRF--DNKR-IVSGAYDGKIKVWDLVAALDPRAPAGTL 376 (435)
T ss_dssp TTEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEEEEEC--CSSE-EEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred CCEEEEEeCCCeEEEEECCC------CCEEEEEeCCcCcEEEEEe--cCCE-EEEEeCCCcEEEEECCCCCCccccccch
Confidence 47999999999999999999 8999999999999999999 5564 5799999999999998765
Q ss_pred cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 323 EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 323 ~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+..+.+|..+|++++| + +..|++++.||+|+|||+.
T Consensus 377 ~~~~~~~h~~~v~~l~~--~------------------~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 377 CLRTLVEHSGRVFRLQF--D------------------EFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEEEECCCSSCCCCEEE--C------------------SSCEEECCSSSEEEEEC--
T ss_pred heeeccCCCCCeEEEEe--C------------------CCEEEEEeCCCEEEEEECC
Confidence 56677788888887776 3 6679999999999999997
No 75
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-33 Score=258.04 Aligned_cols=239 Identities=12% Similarity=0.112 Sum_probs=175.5
Q ss_pred CCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC
Q 046899 37 WPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV 113 (407)
Q Consensus 37 ~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 113 (407)
-|..++.|.|+ +++++.++.+++|-.. . ..........+|.+.|++++|+| ++++|++|+.||+|++||+
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~-----~-~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQD-----G-NGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEE-----T-TEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC--
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEcc-----C-CceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEc
Confidence 36777888874 8889999999999322 1 10122333447999999999999 7899999999999999999
Q ss_pred cCCC---CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC---ce
Q 046899 114 EAQP---NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG---AR 187 (407)
Q Consensus 114 ~~~~---~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~ 187 (407)
.++. ....+..|... +..+........+++++.++.+++||+..++ ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~--------------------------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRA--------------------------ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp ----CCCCEEECCCCSSC--------------------------EEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred CCCCceeeeeEecccCCc--------------------------eEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence 8875 22222222211 1111122233468889999999999998877 46
Q ss_pred eeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC----------------CCceeeecccCcceEEEEecCC
Q 046899 188 GKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS----------------TPAVKVEKAHNADIHCVDWNPH 250 (407)
Q Consensus 188 ~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~l~~~~~ 250 (407)
..+.. |...|.+++|+|++ .+|++++.|+.|++||++... ......+ .|...|.+++|+|
T Consensus 139 ~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp- 215 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP- 215 (377)
T ss_dssp EEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-
T ss_pred eEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-
Confidence 77777 99999999999998 899999999999999996322 1133444 8999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCc----eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSP----IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~----~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
++++|++|+.||.|++||++. ++. +..+.+|..+|.+++|+|++++ |++|+.|+.+ +|+..
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSA------PEQPPRALITVKLSQLPLRSLLWANESAI-VAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECS------TTSCEEECCCEECSSSCEEEEEEEETTEE-EEEESSSSEE-EECCC
T ss_pred CCCEEEEEeCCCcEEEEECCC------CCCcceeeEeecCCCCceEEEEEcCCCCE-EEEEcCCcEE-EEEeC
Confidence 899999999999999999998 666 7888999999999999999985 4688766655 77665
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-34 Score=272.06 Aligned_cols=266 Identities=10% Similarity=-0.004 Sum_probs=192.9
Q ss_pred eEEEeeCCCceEEEEEeCCC-C-------eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccc
Q 046899 76 KFKTIIHPGEVNRIRELPQN-S-------KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSA 147 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~-~-------~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~ 147 (407)
....+.+.+.|.+|+|+|.. + ++||+|+.++.. +. .......+ .....|++|++|++......
T Consensus 126 ~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~---~~-~~~~~~~l-----aS~s~D~tI~iWd~~~~~~~ 196 (524)
T 2j04_B 126 RGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD---EP-LNEHLEMF-----DKEKHSSCIQIFKMNTSTLH 196 (524)
T ss_dssp CEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------CEEEEEEEEETTTCC
T ss_pred ceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC---Cc-cchhhhhh-----ccCCCCceEEEEEccCCCCC
Confidence 33455688999999999932 1 788887754321 00 00000000 00111566666665543211
Q ss_pred ------cccCCCCC---cccccCC---CCCccccccCCCCCCCCCCCCcCc-----------eeeEeecccCEEEEEECC
Q 046899 148 ------LAAEPGSA---KSTASGG---ANSKNASKSGGNGDKPLESPSIGA-----------RGKYLGHEDTVEDVQFCP 204 (407)
Q Consensus 148 ------~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~i~i~d~~~~~~-----------~~~~~~~~~~v~~l~~~~ 204 (407)
+..+...+ .+.+.+. ....+++++.|+.+++||+..+.. ...+.+|...|++++|+|
T Consensus 197 ~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~ 276 (524)
T 2j04_B 197 CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS 276 (524)
T ss_dssp EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS
T ss_pred ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC
Confidence 12222222 2333211 134688899999999999976542 236778999999999998
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE--EecCCCC-CEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899 205 SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV--DWNPHDV-NLILTGSADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 205 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l--~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
++ .|++|+.||+|++||++++.. ....+.+|...|++| .|+| ++ ++|++|+.|++|++||+++ ++++
T Consensus 277 ~~--~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~------~~~~ 346 (524)
T 2j04_B 277 PT--TVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKD------IATT 346 (524)
T ss_dssp SS--EEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGG------HHHH
T ss_pred CC--eEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCC------CCcc
Confidence 54 799999999999999997753 345677999999999 5677 76 8999999999999999998 6777
Q ss_pred eeecCCCC--CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeC
Q 046899 282 HKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI 359 (407)
Q Consensus 282 ~~~~~h~~--~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~ 359 (407)
.++.+|.. .|.+++|+|++.. |++++.|++|++||++++..+..+.+|..+|++++|||+
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~----------------- 408 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL----------------- 408 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS-----------------
T ss_pred cccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC-----------------
Confidence 77776653 5899999999985 579999999999999998888888899999999999998
Q ss_pred ccceeeeEEEeeeEEEeecc
Q 046899 360 HGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 360 ~~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++|+.|++|+|||+.
T Consensus 409 -g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 409 -HPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp -CCBCEEEETTTEEECCBSC
T ss_pred -CCeEEEEECCCEEEEEech
Confidence 8899999999999999986
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.9e-33 Score=284.51 Aligned_cols=271 Identities=16% Similarity=0.188 Sum_probs=231.9
Q ss_pred EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
....+|.+.|.+++|+| ++++||+|+.||.|+|||+.++.....+.+|...+ ....|.
T Consensus 7 ~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~s---------------- 64 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPV-----RAGKFI---------------- 64 (814)
T ss_dssp EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-----EEEEEE----------------
T ss_pred eeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcE-----EEEEEe----------------
Confidence 34458999999999999 88999999999999999998877666665553321 011111
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
+. ...+++++.++.+++||..+++.+..+.+|...|.+++|+|++ .+|++++.||.|++||++++.. ....+.
T Consensus 65 --~~---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~-~~~~~~ 137 (814)
T 3mkq_A 65 --AR---KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA-LEQTFE 137 (814)
T ss_dssp --GG---GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSE-EEEEEE
T ss_pred --CC---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCce-EEEEEc
Confidence 12 2357888899999999999999999999999999999999999 7899999999999999987642 466777
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-CCEEEEEEcC--CCCCEEEEeeCCCeE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSP--DKSSVFGSSAEDGIL 313 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~--~~~~ll~s~~~d~~i 313 (407)
.|...|.+++|+|.+++.|++++.||.|++||++. +.+...+..+. ..+.+++|+| ++.++ ++++.||.|
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i 210 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPDKPYM-ITASDDLTI 210 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------SSCSEEEECCCTTCCCEEEECCSTTCCEE-EEECTTSEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcceeEEecCCCCCEEEEEEEECCCCCEE-EEEeCCCEE
Confidence 89999999999996678999999999999999988 66777776654 8999999999 88855 699999999
Q ss_pred EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899 314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL 393 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 393 (407)
++||+++++.+..+.+|..+|++++|+|+ +..+++++.||.|++||+. +++++..+
T Consensus 211 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~l~~~~~dg~v~vwd~~------~~~~~~~~ 266 (814)
T 3mkq_A 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPT------------------LPIIISGSEDGTLKIWNSS------TYKVEKTL 266 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSS------------------SSEEEEEETTSCEEEEETT------TCSEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCC------------------CCEEEEEeCCCeEEEEECC------CCcEEEEe
Confidence 99999998888889999999999999998 7899999999999999998 67777788
Q ss_pred hhcccceeEeeccC
Q 046899 394 DKFKSHIFGCDKSC 407 (407)
Q Consensus 394 ~~h~~~v~~~~~s~ 407 (407)
..|...|.+++|++
T Consensus 267 ~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 267 NVGLERSWCIATHP 280 (814)
T ss_dssp CCSSSSEEEEEECT
T ss_pred ecCCCcEEEEEEcc
Confidence 88999999999875
No 78
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-32 Score=250.28 Aligned_cols=251 Identities=15% Similarity=0.203 Sum_probs=197.9
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc----ccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR----HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
+.+|.+.|++++|+| ++++||+|+.||.|++||+.+.... ..+.+|...
T Consensus 7 ~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-------------------------- 59 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS-------------------------- 59 (351)
T ss_dssp ECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC--------------------------
T ss_pred CcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc--------------------------
Confidence 358999999999999 8899999999999999999875322 222222221
Q ss_pred CcccccCC--CCCccccccCCCCCCCCCCCCc---------CceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEE
Q 046899 155 AKSTASGG--ANSKNASKSGGNGDKPLESPSI---------GARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLIL 221 (407)
Q Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~i 221 (407)
+..+.... ....+++++.|+.+++||+..+ +.+..+.+|...|.+++|+|+ + .+|++++.||.|++
T Consensus 60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~i 138 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRL 138 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEE
T ss_pred EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEE
Confidence 11111111 1345788899999999999876 446777889999999999998 7 89999999999999
Q ss_pred EEcCCCCCCceee-----------ecccCcceEEEEecCC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC
Q 046899 222 WDARSGSTPAVKV-----------EKAHNADIHCVDWNPH--DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS 288 (407)
Q Consensus 222 wd~~~~~~~~~~~-----------~~~~~~~v~~l~~~~~--~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~ 288 (407)
||+++++...... ...|...+.+++|+|. ++.++++++.|+.+.+|+..... ...+..+.+|.
T Consensus 139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~ 214 (351)
T 3f3f_A 139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHK 214 (351)
T ss_dssp EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCCCC
T ss_pred ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCCCC
Confidence 9999876321111 1257789999999993 38999999999999888877621 23477888999
Q ss_pred CCEEEEEEcCCCC---CEEEEeeCCCeEEEEeCCCC--------------------------------------------
Q 046899 289 AAVLCVQWSPDKS---SVFGSSAEDGILNIWDHEKI-------------------------------------------- 321 (407)
Q Consensus 289 ~~v~~v~~~~~~~---~ll~s~~~d~~i~vwd~~~~-------------------------------------------- 321 (407)
..|++++|+|++. .+|++|+.||.|++||++..
T Consensus 215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (351)
T 3f3f_A 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL 294 (351)
T ss_dssp SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSE
T ss_pred cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence 9999999999982 35689999999999999874
Q ss_pred --CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 322 --GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 322 --~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+.+..+.+|..+|++++|+|+ +..|++++.|+.|+|||+.
T Consensus 295 ~~~~~~~~~~h~~~v~~~~~s~~------------------~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 295 QVELLSEHDDHNGEVWSVSWNLT------------------GTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEEEEEEECTTSSCEEEEEECSS------------------SCCEEEEETTSCEEEEEEC
T ss_pred cccEEEEEecccccEEEEEEcCC------------------CCEEEEecCCCcEEEEecC
Confidence 344556678888888888887 8899999999999999998
No 79
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-34 Score=268.31 Aligned_cols=259 Identities=13% Similarity=0.099 Sum_probs=209.7
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN 164 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (407)
.+++++|+| ++++|++|+.||.|++||+.+......+..+.. ..+..|. ...
T Consensus 58 ~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~------~~~~~~~---------------------~~~ 109 (420)
T 3vl1_A 58 AGKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLKRADY------TAVDTAK---------------------LQM 109 (420)
T ss_dssp CCTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSCSCCE------EEEEEEC---------------------SSS
T ss_pred cccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEecCCc------eEEEEEe---------------------cCC
Confidence 345789999 888999999999999999987765544433210 0111111 122
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEE
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHC 244 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 244 (407)
..+++++.++.+++||...++....+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++ ....+.+|...|.+
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~ 186 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVTD 186 (420)
T ss_dssp CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--CCEEEECCSSCEEE
T ss_pred CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc--CceEEcCCCCcEEE
Confidence 457888999999999999988888888999999999999998 799999999999999999888 56777899999999
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEE---------------------EEEcCCC
Q 046899 245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLC---------------------VQWSPDK 300 (407)
Q Consensus 245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~---------------------v~~~~~~ 300 (407)
++|+| ++++|++|+.||.|++||+++ ++++..+.. |...|.+ ++|+|++
T Consensus 187 ~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 187 IAIID-RGRNVLSASLDGTIRLWECGT------GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp EEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred EEEcC-CCCEEEEEcCCCcEEEeECCC------CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 99999 899999999999999999998 788888764 3344444 4557888
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeec
Q 046899 301 SSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRM 378 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~ 378 (407)
.++ ++|+.||.|++||+++.+.+..+. .+..+|++++|+|+ +. .+++++.|+.|++||+
T Consensus 260 ~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 260 KYV-IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN------------------NANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp EEE-EEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS------------------CTTEEEEEETTSEEEEEET
T ss_pred CEE-EEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC------------------CCCEEEEEeCCCeEEEEEc
Confidence 855 799999999999999988776665 47788999999888 66 8999999999999999
Q ss_pred cccccCChH-HHHHHHhh-cccceeEeecc
Q 046899 379 IDLIYRPEE-EVLAELDK-FKSHIFGCDKS 406 (407)
Q Consensus 379 ~~~~~~~~~-~~~~~~~~-h~~~v~~~~~s 406 (407)
. ++ .++..+.+ |...|.++.|+
T Consensus 321 ~------~~~~~~~~~~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 321 R------SPECPVGEFLINEGTPINNVYFA 344 (420)
T ss_dssp T------CTTSCSEEEEESTTSCEEEEEEE
T ss_pred C------CCcCchhhhhccCCCCceEEEeC
Confidence 8 44 33566666 66778777664
No 80
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-33 Score=251.88 Aligned_cols=288 Identities=13% Similarity=0.201 Sum_probs=230.3
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-------------CCcEEEEeccccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------DQSVVLWSIQDHVSA 147 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------d~~i~~w~~~~~~~~ 147 (407)
.|.++|.+++|+| ++++++++..++.+.+|+...........+|...+... |+.+++|++......
T Consensus 7 ~~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 7 MGSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC
T ss_pred ccCCceeEEEECC-CCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce
Confidence 4678899999999 88999988887777676554433222223344333222 899999999865321
Q ss_pred --c---c--cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCCCCcEEEEEeCCCc
Q 046899 148 --L---A--AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC 218 (407)
Q Consensus 148 --~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~ 218 (407)
+ . .+...+..+........+++++.++.+++||...++ ....+..|...|.+++|+|++ .+|++++.||.
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~ 164 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGN 164 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCc
Confidence 1 1 233444444455555678889999999999998877 566777899999999999998 89999999999
Q ss_pred EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899 219 LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP 298 (407)
Q Consensus 219 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 298 (407)
|++||+++++ ....+..|...+.+++|+| ++++|++++.||.|++||++. ++.+..+. |...+.+++|+|
T Consensus 165 v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~-~~~~v~~~~~s~ 234 (337)
T 1gxr_A 165 IAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQHD-FTSQIFSLGYCP 234 (337)
T ss_dssp EEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEEE-CSSCEEEEEECT
T ss_pred EEEEeCCCCc--eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCC------CceEeeec-CCCceEEEEECC
Confidence 9999999887 6777888999999999999 899999999999999999998 77777765 778999999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 299 DKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 299 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
++.++ ++++.|+.|++||+++.+. ..+..|..++++++|+|+ +..+++++.|+.|++||+
T Consensus 235 ~~~~l-~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~------------------~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 235 TGEWL-AVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYC------------------GKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp TSSEE-EEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTT------------------SSEEEEEETTSEEEEEET
T ss_pred CCCEE-EEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCC------------------CCEEEEecCCCcEEEEEC
Confidence 99965 6999999999999998654 466778889999999988 888999999999999999
Q ss_pred cccccCChHHHHHHHhhcccceeEeeccC
Q 046899 379 IDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 379 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
. +++.+ ....|...|.+++|++
T Consensus 295 ~------~~~~~-~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 295 P------YGASI-FQSKESSSVLSCDISV 316 (337)
T ss_dssp T------TCCEE-EEEECSSCEEEEEECT
T ss_pred C------CCeEE-EEecCCCcEEEEEECC
Confidence 8 34433 2346888999999985
No 81
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=261.27 Aligned_cols=284 Identities=11% Similarity=0.146 Sum_probs=211.3
Q ss_pred hhhccCceEEEeeeecccCCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC
Q 046899 18 QWKSLVPVLYDWLANHNLVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP 93 (407)
Q Consensus 18 ~w~~~~~~~y~~l~~~~~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 93 (407)
.|+.....+..+.. .+.-+..++.|.| .+++++.|+.+++|-.. ..............+|.+.|++++|+|
T Consensus 47 ~w~~~g~~~~~~~~--~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~ 121 (437)
T 3gre_A 47 MGNLRGKLIATLME--NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK---EIIVGEVYSSSLTYDCSSTVTQITMIP 121 (437)
T ss_dssp GGGCCCCEEEEECT--TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH---HHHTTCCCSCSEEEECSSCEEEEEECT
T ss_pred cccccceEEeeecc--CCCCceEEEEECCCCCCEEEEecCCceEEEeECc---ccccCcccceeeeccCCCCEEEEEEeC
Confidence 46655544433222 2344677888888 48899999999999322 211111222334447999999999999
Q ss_pred CCCeEEEEeeCCCcEEEEeCc---CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccc
Q 046899 94 QNSKIVATHTDSPDVLIWDVE---AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASK 170 (407)
Q Consensus 94 ~~~~~l~tg~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (407)
++++|++|+.||+|++||+. +++.......+
T Consensus 122 -~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------------- 155 (437)
T 3gre_A 122 -NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--------------------------------------------- 155 (437)
T ss_dssp -TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---------------------------------------------
T ss_pred -CCCEEEEEeCCCEEEEEEeccccCCceeeccccc---------------------------------------------
Confidence 88999999999999999995 33322211110
Q ss_pred cCCCCCCCCCCCCcCceeeEe--e--cccCEEEEE--ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc--cCcce
Q 046899 171 SGGNGDKPLESPSIGARGKYL--G--HEDTVEDVQ--FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA--HNADI 242 (407)
Q Consensus 171 ~~~~~i~i~d~~~~~~~~~~~--~--~~~~v~~l~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v 242 (407)
.+..+. . +...+.++. +++++ .+|++|+.|+.|++||+++++ ....+.. |...|
T Consensus 156 ---------------~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v 217 (437)
T 3gre_A 156 ---------------CIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAV 217 (437)
T ss_dssp ---------------EEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCE
T ss_pred ---------------eeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCce
Confidence 011111 1 456777877 66888 899999999999999999988 5667766 88999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcC----CCCCEEEEeeCCCeEEEEe
Q 046899 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSP----DKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~----~~~~ll~s~~~d~~i~vwd 317 (407)
++++|+| ++++|++|+.||.|++||++. ++++.++. .|..+|++++|+| ++. +|++|+.|+.|++||
T Consensus 218 ~~~~~s~-~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 218 SSICIDE-ECCVLILGTTRGIIDIWDIRF------NVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWN 289 (437)
T ss_dssp EEEEECT-TSCEEEEEETTSCEEEEETTT------TEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEE
T ss_pred EEEEECC-CCCEEEEEcCCCeEEEEEcCC------ccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEE
Confidence 9999999 899999999999999999998 78888886 7888999996665 565 457999999999999
Q ss_pred CCCCCcccccccCCCcccCCCCcCcchhc---------cccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 318 HEKIGEKQDYGELKYPIIHPAYSSDMLDI---------ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~---------~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+++++.+..+.++...+..+.|+|+-..+ ..+.+..+... .+..|++++.|+.|++||+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTC
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCC
Confidence 99999999999998888888888762111 12223333333 357899999999999999973
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=262.51 Aligned_cols=254 Identities=11% Similarity=0.139 Sum_probs=184.3
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC-----------cccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN-----------RHAVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
.|.+.|++++|+| ++++||+|+.||.|+|||+.+... ...+.+|.... ..+.-.+.
T Consensus 26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~----~~~~~~~~-------- 92 (447)
T 3dw8_B 26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEF----DYLKSLEI-------- 92 (447)
T ss_dssp CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEE----EGGGTEEE--------
T ss_pred cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccc----cccccccc--------
Confidence 5789999999999 899999999999999999987652 22233332000 00000000
Q ss_pred cCCCCCcccccCCCC--CccccccCCCCCCCCCCCCcCce---------------------------------------e
Q 046899 150 AEPGSAKSTASGGAN--SKNASKSGGNGDKPLESPSIGAR---------------------------------------G 188 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~---------------------------------------~ 188 (407)
...+..+...... ..+++++.|+.+++||+..++.. .
T Consensus 93 --~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 93 --EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp --CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred --cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 0111111112221 34666677777777776543321 1
Q ss_pred e-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-------eecccCcceEEEEecCCCC-CEEEEEe
Q 046899 189 K-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-------VEKAHNADIHCVDWNPHDV-NLILTGS 259 (407)
Q Consensus 189 ~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~~-~~l~tg~ 259 (407)
. ..+|...|.+++|+|++ .+|++| .|+.|++||+++... ... .+..|...|++++|+| ++ ++|++|+
T Consensus 171 ~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~ 246 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSS 246 (447)
T ss_dssp EECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEE
T ss_pred EeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECC-CCCcEEEEEe
Confidence 2 25799999999999998 789998 799999999985432 222 3568999999999999 66 9999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCc----eeeecCCCC------------CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-CC
Q 046899 260 ADNSIHMFDRRKLTSDGVGSP----IHKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-IG 322 (407)
Q Consensus 260 ~dg~i~vwd~~~~~~~~~~~~----~~~~~~h~~------------~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-~~ 322 (407)
.||.|++||++. ++. +..+..|.. .|.+++|+|++++| ++++. +.|++||+++ .+
T Consensus 247 ~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~-~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 247 SKGTIRLCDMRA------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYM-MTRDY-LSVKVWDLNMENR 318 (447)
T ss_dssp TTSCEEEEETTT------CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEE-EEEES-SEEEEEETTCCSS
T ss_pred CCCeEEEEECcC------CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEE-EEeeC-CeEEEEeCCCCcc
Confidence 999999999998 555 788888876 89999999999965 68887 9999999997 77
Q ss_pred cccccccCCCccc---------------CCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 323 EKQDYGELKYPII---------------HPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 323 ~~~~~~~~~~~v~---------------~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+..+..|...+. .++|+|+ +..|++++.|+.|+|||+.
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~------------------~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 319 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS------------------DSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT------------------SSEEEEECSTTEEEEEETT
T ss_pred ccceeeccccccccccccccccccccceEEEECCC------------------CCEEEEeccCCEEEEEEcC
Confidence 7788877754332 2667666 8889999999999999997
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-31 Score=271.02 Aligned_cols=269 Identities=13% Similarity=0.169 Sum_probs=217.6
Q ss_pred CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
.-+...+.|.|+ +++++.++.+++|. +.. ........+|.++|++++|+| ++++|++|+.||.|++||
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd---~~~-----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWN---YET-----QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEE---TTT-----TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEE---CCC-----CceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence 445677888874 78888999999992 211 122334447999999999999 889999999999999999
Q ss_pred CcCCCCcccccCcCCCCCCC--------------CCcEEEEeccccc---cccccCCCCCcccccCC-CCCccccccCCC
Q 046899 113 VEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHV---SALAAEPGSAKSTASGG-ANSKNASKSGGN 174 (407)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 174 (407)
+.+++....+.+|...+... |+.+++|++.+.. ..+..+...+..+...+ ....+++++.++
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 99988877777665543322 8999999998762 23334444444444444 345688899999
Q ss_pred CCCCCCCCCcCceeeEeecc-cCEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899 175 GDKPLESPSIGARGKYLGHE-DTVEDVQFCP--SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
.+++||...++....+..+. ..+.+++|+| ++ .++++++.||.|++||+++++ ....+..|...|.+++|+| +
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-~ 239 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHP-T 239 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTE--EEEEEECCSSCEEEEEECS-S
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcC-C
Confidence 99999999888887777655 8999999999 77 799999999999999999887 6777888999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
++++++|+.||.|++||+.+ ++.+..+..|...+.+++|+|++..++++++.|+.+.+|++.....
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSST------YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp SSEEEEEETTSCEEEEETTT------CSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred CCEEEEEeCCCeEEEEECCC------CcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 99999999999999999998 8899999999999999999999986534555588899999876443
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.8e-32 Score=266.16 Aligned_cols=289 Identities=15% Similarity=0.250 Sum_probs=232.1
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC----CCcccccCcCCC-------CC--CC--------CCcEEEE
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ----PNRHAVLGAADS-------HP--DL--------DQSVVLW 139 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~----~~~~~~~~~~~~-------~~--~~--------d~~i~~w 139 (407)
.|.+.|++++|+| ++++|++++ ++.|++||+.++ +....+.+|... .+ +. |+.|++|
T Consensus 16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 5899999999999 888999998 789999999988 677667666554 23 33 8999999
Q ss_pred ecccc--------c--cccccCCCCCcccccCCCCCccccccCC----CCCCCCCCCCcCceeeEeecccCEEEEEECCC
Q 046899 140 SIQDH--------V--SALAAEPGSAKSTASGGANSKNASKSGG----NGDKPLESPSIGARGKYLGHEDTVEDVQFCPS 205 (407)
Q Consensus 140 ~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~ 205 (407)
++.++ . ..+..+...+..+........+++++.+ +.+.+|| .++.+..+.+|...|.+++|+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence 99643 1 2333345555555555555667777766 6888898 56678888899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc---ceEEEEecCCC-CCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899 206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA---DIHCVDWNPHD-VNLILTGSADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~l~~~~~~-~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
+..++++++.|+.|++||+++++ ....+..|.. .|.+++|+| + +++|++++.||.|++||+++ ++++
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~------~~~~ 242 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS------GEFL 242 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT------CCEE
T ss_pred CCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC------CCEe
Confidence 95589999999999999998877 6777888998 999999999 7 99999999999999999998 8889
Q ss_pred eee-c---CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEe
Q 046899 282 HKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMH 357 (407)
Q Consensus 282 ~~~-~---~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~ 357 (407)
..+ . .|...|.+++|+ ++.++ ++++.|+.|++||+++++.+..+..+..++.... ..+..
T Consensus 243 ~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-------------~~~~~- 306 (615)
T 1pgu_A 243 KYIEDDQEPVQGGIFALSWL-DSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ-------------VGVVA- 306 (615)
T ss_dssp EECCBTTBCCCSCEEEEEES-SSSEE-EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE-------------EEEEE-
T ss_pred EEecccccccCCceEEEEEc-CCCEE-EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce-------------eEEEe-
Confidence 888 6 899999999999 88855 7999999999999999888777766532221111 11111
Q ss_pred eCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899 358 LIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK 405 (407)
Q Consensus 358 ~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 405 (407)
. .+..+++++.|+.|++||+. +++++..+.+|.+.|.+++|
T Consensus 307 ~-~~~~l~~~~~~g~i~~~d~~------~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 307 T-GNGRIISLSLDGTLNFYELG------HDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp E-ETTEEEEEETTSCEEEEETT------EEEEEEEECCCSSCEEEEET
T ss_pred C-CCCeEEEEECCCCEEEEECC------CCcEEEEEeCCCCCEEEEEe
Confidence 1 47788999999999999988 56677778888888888887
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.2e-32 Score=254.24 Aligned_cols=263 Identities=14% Similarity=0.193 Sum_probs=210.8
Q ss_pred eCCCc--eEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 81 IHPGE--VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 81 ~h~~~--v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
+|... ++++.|++ ..+++++.||.|++||+.+++....+.... ...+..+
T Consensus 89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-------------------------~~~v~~v 140 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDE-------------------------STYVASV 140 (401)
T ss_dssp TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCT-------------------------TCCEEEE
T ss_pred CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCC-------------------------CCCEEEE
Confidence 56555 44566654 347778899999999998876544332210 0111111
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
........+++++.++.+++||..+++.+..+.+|...|.+++|++ .+|++|+.||.|++||++.... ....+..|
T Consensus 141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~ 216 (401)
T 4aez_A 141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH-QIGTLQGH 216 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC-EEEEEECC
T ss_pred EECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc-eeeEEcCC
Confidence 1222234578888999999999999999999999999999999953 6899999999999999995443 46777899
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee--CCCeEEEE
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGILNIW 316 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~--~d~~i~vw 316 (407)
...|.+++|+| ++++|++|+.||.|++||+++ ++++..+..|...|.+++|+|++..++++++ .|+.|++|
T Consensus 217 ~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 217 SSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTC------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred CCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 99999999999 999999999999999999998 8899999999999999999999988988876 79999999
Q ss_pred eCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee--EEEeeeEEEeeccccccCChHHH--HHH
Q 046899 317 DHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC--LTMVKVLEIWRMIDLIYRPEEEV--LAE 392 (407)
Q Consensus 317 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~i~iwd~~~~~~~~~~~~--~~~ 392 (407)
|+.+++.+..+. +..++.+++|+|+ +..+++ |+.|+.|+|||+. +++. +..
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~------------------~~~l~~~~g~~dg~i~v~~~~------~~~~~~~~~ 344 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPH------------------SKEIMSTHGFPDNNLSIWSYS------SSGLTKQVD 344 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSS------------------SSEEEEEECTTTCEEEEEEEE------TTEEEEEEE
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCC------------------CCeEEEEeecCCCcEEEEecC------CccceeEEE
Confidence 999988777764 5667888888887 777877 4489999999997 3322 234
Q ss_pred HhhcccceeEeeccC
Q 046899 393 LDKFKSHIFGCDKSC 407 (407)
Q Consensus 393 ~~~h~~~v~~~~~s~ 407 (407)
+.+|.+.|.+++|++
T Consensus 345 ~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 345 IPAHDTRVLYSALSP 359 (401)
T ss_dssp EECCSSCCCEEEECT
T ss_pred ecCCCCCEEEEEECC
Confidence 678999999999985
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=1.3e-31 Score=251.75 Aligned_cols=254 Identities=16% Similarity=0.277 Sum_probs=214.4
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
+|...|.++.+ ++++|++|+.||.|++||+.+++....+.+|... |.....
T Consensus 131 ~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-------v~~l~~------------------- 181 (435)
T 1p22_A 131 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS-------VLCLQY------------------- 181 (435)
T ss_dssp SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC-------EEEEEC-------------------
T ss_pred CCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCc-------EEEEEE-------------------
Confidence 57778999875 6789999999999999999988877776665433 111111
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-ceeeecccC
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-AVKVEKAHN 239 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~ 239 (407)
....+++++.||.+++||..+++.+..+.+|...|.+++|++ .++++|+.||.|++||++++... ....+.+|.
T Consensus 182 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 256 (435)
T 1p22_A 182 --DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256 (435)
T ss_dssp --CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred --CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC
Confidence 124578899999999999999999999999999999999974 58999999999999999987632 125677899
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
..|.+++| +++++++|+.||.|++||+++ ++++.++.+|...|.+++|+ +. ++++|+.||.|++||++
T Consensus 257 ~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 257 AAVNVVDF---DDKYIVSASGDRTIKVWNTST------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp SCEEEEEE---ETTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETT
T ss_pred CcEEEEEe---CCCEEEEEeCCCeEEEEECCc------CcEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECC
Confidence 99999999 458999999999999999999 89999999999999999995 45 45799999999999999
Q ss_pred CCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH---------HH
Q 046899 320 KIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE---------VL 390 (407)
Q Consensus 320 ~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~---------~~ 390 (407)
+++.+..+.+|..+|++++| + +..|++|+.||+|+|||+. .++ ++
T Consensus 325 ~~~~~~~~~~h~~~v~~~~~--~------------------~~~l~sg~~dg~i~vwd~~------~~~~~~~~~~~~~~ 378 (435)
T 1p22_A 325 CGACLRVLEGHEELVRCIRF--D------------------NKRIVSGAYDGKIKVWDLV------AALDPRAPAGTLCL 378 (435)
T ss_dssp TCCEEEEECCCSSCEEEEEC--C------------------SSEEEEEETTSCEEEEEHH------HHTSTTSCTTTTEE
T ss_pred CCCEEEEEeCCcCcEEEEEe--c------------------CCEEEEEeCCCcEEEEECC------CCCCccccccchhe
Confidence 99999999999988877776 3 6679999999999999997 444 66
Q ss_pred HHHhhcccceeEeecc
Q 046899 391 AELDKFKSHIFGCDKS 406 (407)
Q Consensus 391 ~~~~~h~~~v~~~~~s 406 (407)
..+.+|.+.|++++|.
T Consensus 379 ~~~~~h~~~v~~l~~~ 394 (435)
T 1p22_A 379 RTLVEHSGRVFRLQFD 394 (435)
T ss_dssp EEECCCSSCCCCEEEC
T ss_pred eeccCCCCCeEEEEeC
Confidence 7788999999999874
No 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=4.7e-31 Score=239.48 Aligned_cols=258 Identities=11% Similarity=0.123 Sum_probs=208.2
Q ss_pred cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEE
Q 046899 35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLI 110 (407)
Q Consensus 35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~v 110 (407)
+.-+..++.|.|+ +++++.++.+++|-. ....+........+|.+.|++++|+| +++ +|++|+.||.|++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKF-----DIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEE-----ETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEe-----CCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEE
Confidence 4446677889874 788999999999922 22222233455568999999999999 788 9999999999999
Q ss_pred EeC-cCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee
Q 046899 111 WDV-EAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK 189 (407)
Q Consensus 111 wd~-~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 189 (407)
||+ .++.. ..
T Consensus 84 wd~~~~~~~---------------------------------------------------------------------~~ 94 (342)
T 1yfq_A 84 VDLIGSPSF---------------------------------------------------------------------QA 94 (342)
T ss_dssp ECSSSSSSE---------------------------------------------------------------------EE
T ss_pred EEeccCCce---------------------------------------------------------------------Ee
Confidence 998 65421 22
Q ss_pred Eee--cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC---------CCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899 190 YLG--HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS---------GSTPAVKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 190 ~~~--~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
+.+ |...|.+++|+| + .+|++++.|+.|++||+++ .+ ....+. |...|.+++|+| ++ ++++
T Consensus 95 ~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~-~~--l~~~ 166 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK-VKNKIFTMDTNS-SR--LIVG 166 (342)
T ss_dssp CBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-SCCCEEEEEECS-SE--EEEE
T ss_pred ccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCC--eeeEEe-eCCceEEEEecC-Cc--EEEE
Confidence 335 888999999999 6 7999999999999999987 55 344443 889999999998 54 9999
Q ss_pred eCCCcEEEEeCCC-CCCCCCCCceeeecCCCCCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCC------CcccccccC
Q 046899 259 SADNSIHMFDRRK-LTSDGVGSPIHKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEKI------GEKQDYGEL 330 (407)
Q Consensus 259 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~------~~~~~~~~~ 330 (407)
+.|+.|++||++. .. .........|...|.+++|+| ++.++ ++++.||.|++||++.. +....+..+
T Consensus 167 ~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCED----DNGTIEESGLKYQIRDVALLPKEQEGY-ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp ESTTEEEEEESSCCTT----CCCEEEECSCSSCEEEEEECSGGGCEE-EEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred eCCCeEEEEECCcccc----ccceeeecCCCCceeEEEECCCCCCEE-EEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 9999999999987 32 223445556888999999999 98854 79999999999999886 556666666
Q ss_pred CC---------cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhc-ccce
Q 046899 331 KY---------PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKF-KSHI 400 (407)
Q Consensus 331 ~~---------~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v 400 (407)
.. +|++++|+|+ +..|++++.|+.|++||+. +++++..+.+| .+.|
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~------------------~~~l~~~~~dg~i~vwd~~------~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPR------------------HKFLYTAGSDGIISCWNLQ------TRKKIKNFAKFNEDSV 297 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTT------------------TCCEEEEETTSCEEEEETT------TTEEEEECCCCSSSEE
T ss_pred cccccccccceeEEEEEEcCC------------------CCEEEEecCCceEEEEcCc------cHhHhhhhhcccCCCc
Confidence 54 8888888887 8899999999999999998 67778889998 9999
Q ss_pred eEee
Q 046899 401 FGCD 404 (407)
Q Consensus 401 ~~~~ 404 (407)
++++
T Consensus 298 ~~~~ 301 (342)
T 1yfq_A 298 VKIA 301 (342)
T ss_dssp EEEE
T ss_pred eEec
Confidence 8876
No 88
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=1.1e-31 Score=248.70 Aligned_cols=300 Identities=14% Similarity=0.143 Sum_probs=191.8
Q ss_pred cCCCeeEEEEee------cccccCccceEEEEeeccc-CcccCCcceeeEEEeeCCCceEEEEEeC--------------
Q 046899 35 LVWPSLSCRWGP------QLEQATYKNRQRLYLSEQF-NEEARSPFVKKFKTIIHPGEVNRIRELP-------------- 93 (407)
Q Consensus 35 ~~~p~~s~~~~~------~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------- 93 (407)
++...+.+.|.. .++....++.+++|....- ................|...+..+.|.+
T Consensus 14 l~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 14 LNVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TTCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 334445566732 3444455667888844311 1111111222333444555555555543
Q ss_pred -----CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899 94 -----QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA 168 (407)
Q Consensus 94 -----~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (407)
.++.+||+|+.|++|+|||..++.....
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~----------------------------------------------- 126 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQ----------------------------------------------- 126 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEE-----------------------------------------------
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCcccee-----------------------------------------------
Confidence 3566899999999999999876532211
Q ss_pred cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC--------CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899 169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP--------SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 240 (407)
..+..+.+|.+.|++++|+| ++ ++|++|+.|++|++||++++. .......|..
T Consensus 127 ----------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~--~~~~~~~~~~ 187 (393)
T 4gq1_A 127 ----------------HVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG--PILAGYPLSS 187 (393)
T ss_dssp ----------------EEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE--EEEEEEECSS
T ss_pred ----------------eeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc--eeeeecCCCC
Confidence 12234558999999999997 56 899999999999999998877 5667778999
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-------------------CceeeecCCCCCEEEEEEc-CCC
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG-------------------SPIHKFEGHSAAVLCVQWS-PDK 300 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-------------------~~~~~~~~h~~~v~~v~~~-~~~ 300 (407)
.+.+++|+|.++++|++|+.||.|++||+++....... .......+|...|.+++|+ |++
T Consensus 188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg 267 (393)
T 4gq1_A 188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG 267 (393)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT
T ss_pred CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC
Confidence 99999999944568999999999999999873311000 0011224578889999987 788
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc--eeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 301 SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL--LTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~--~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
..| ++++.|+++++||+...+....+..+...+..+.++++........ ...++.....+.++++|+.|++|+|||+
T Consensus 268 ~~l-~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~ 346 (393)
T 4gq1_A 268 SGI-LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT 346 (393)
T ss_dssp CEE-EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred CEE-EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence 865 6999999999999999888888888888888888888743222111 1112222233446778899999999999
Q ss_pred cccccCChHHHHHHHhhcccceeEeeccC
Q 046899 379 IDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 379 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
. +++++..+.+|...|.+|+||+
T Consensus 347 ~------~~~~~~~~~~~~~~V~svafsp 369 (393)
T 4gq1_A 347 Y------EKDSNSIPIQLGMPIVDFCWHQ 369 (393)
T ss_dssp T------CTTCCEEEEECSSCEEEEEECT
T ss_pred C------CCcEEEEecCCCCcEEEEEEcC
Confidence 8 6777777889999999999996
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.8e-32 Score=269.75 Aligned_cols=252 Identities=18% Similarity=0.207 Sum_probs=203.3
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC--CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ--PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
..+|.+.|++++|+| ++++|++|+.||.|+|||+.+. .....+.+|... +.
T Consensus 5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~--------------------------V~ 57 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--------------------------VW 57 (753)
T ss_dssp ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSC--------------------------EE
T ss_pred cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCc--------------------------eE
Confidence 348999999999999 8889999999999999999833 333344444322 11
Q ss_pred ccccCCC--CCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 157 STASGGA--NSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 157 ~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
.+..... ...+++++.||.+++||..+++ .+..+.+|...|.+++|+|+ + .++++|+.||.|++||++++...
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCC
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCc
Confidence 1111111 3458889999999999998876 67777889999999999998 7 89999999999999999988544
Q ss_pred ceeeecccCcceEEEEecCC------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899 231 AVKVEKAHNADIHCVDWNPH------------DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP 298 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~------------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 298 (407)
.......|...|.+++|+|. ++.++++|+.||.|++||++..... ..+...+.+|..+|++++|+|
T Consensus 137 ~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSP 214 (753)
T ss_dssp CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECC
T ss_pred ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEecc
Confidence 55667789999999999994 4889999999999999999872110 155678889999999999999
Q ss_pred C---CCCEEEEeeCCCeEEEEeCCCCC-----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe
Q 046899 299 D---KSSVFGSSAEDGILNIWDHEKIG-----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV 370 (407)
Q Consensus 299 ~---~~~ll~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d 370 (407)
+ +. ++++|+.||.|++||+++.+ .......+..+|++++|+|+ +..+++++.|
T Consensus 215 ~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd------------------g~~l~s~s~D 275 (753)
T 3jro_A 215 TVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------------------GNVLALSGGD 275 (753)
T ss_dssp CCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT------------------TCCEEEECSS
T ss_pred CCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC------------------CCEEEEEcCC
Confidence 9 66 45799999999999999864 34445567888999999998 8899999999
Q ss_pred eeEEEeecc
Q 046899 371 KVLEIWRMI 379 (407)
Q Consensus 371 ~~i~iwd~~ 379 (407)
|.|+||++.
T Consensus 276 g~I~vwd~~ 284 (753)
T 3jro_A 276 NKVTLWKEN 284 (753)
T ss_dssp SCEECCBCC
T ss_pred CEEEEEecC
Confidence 999999987
No 90
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=1.1e-31 Score=239.11 Aligned_cols=232 Identities=17% Similarity=0.264 Sum_probs=181.9
Q ss_pred CCcccccCCCCCccccccCCCCCCCCCCCC--cCceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 154 SAKSTASGGANSKNASKSGGNGDKPLESPS--IGARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
.+..+........+++++.|+.+++||... .+.+..+.+|...|.+++|+|. + .+|++|+.|++|++||++++..
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCB
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCce
Confidence 333333444455689999999999999864 4678889999999999999864 5 7999999999999999998753
Q ss_pred CceeeecccCcceEEEEecCCC--CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC-------
Q 046899 230 PAVKVEKAHNADIHCVDWNPHD--VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK------- 300 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~--~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~------- 300 (407)
.....+..|...|.+++|+| + +.+|++|+.||.|++||++... ......+.+|...|.+++|+|++
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 164 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (297)
T ss_dssp CCCEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSS----CBCCEEEECCSSCEEEEEECCCC-------
T ss_pred EEEEEeecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCC----ceeeeeeecccCccceEeecCCcccccccC
Confidence 34566778999999999999 5 7899999999999999998721 12246778899999999999973
Q ss_pred -----CCEEEEeeCCCeEEEEeCCCCC----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee
Q 046899 301 -----SSVFGSSAEDGILNIWDHEKIG----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK 371 (407)
Q Consensus 301 -----~~ll~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 371 (407)
..+|++|+.|++|++||+++.+ ....+.+|..+|.+++|+|+. ..+..|++++.|+
T Consensus 165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~---------------~~~~~las~s~D~ 229 (297)
T 2pm7_B 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------------LLRSYMASVSQDR 229 (297)
T ss_dssp -----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------------SSSEEEEEEETTS
T ss_pred CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC---------------CCceEEEEEECCC
Confidence 2356899999999999998765 456788899999999999971 0136899999999
Q ss_pred eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 372 VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+|+|||+......... .+....+|...|++++||+
T Consensus 230 ~v~iWd~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~ 264 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWKK-TLLKEEKFPDVLWRASWSL 264 (297)
T ss_dssp CEEEEEESSTTSCCEE-EESSSSCCSSCEEEEEECS
T ss_pred cEEEEEeCCCCCccce-eeeecccCCCcEEEEEECC
Confidence 9999999731100000 0111257888999999985
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-30 Score=228.63 Aligned_cols=267 Identities=14% Similarity=0.165 Sum_probs=209.0
Q ss_pred cCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 35 LVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 35 ~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
+.-+...+.| | .+++++.|+.+++|-.. ..........|.+.|.+++|+| ++++|++|+.||.|++|
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~--------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD--------DQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGV 86 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEES--------SSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC--------CCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEE
Confidence 3445666677 5 48899999999999221 1122344557999999999999 88999999999999999
Q ss_pred eCcCCC---CcccccCcCCCCCCC------------CCcEEEEeccccccccccCCCCCcccccCC-CCCccccccCCCC
Q 046899 112 DVEAQP---NRHAVLGAADSHPDL------------DQSVVLWSIQDHVSALAAEPGSAKSTASGG-ANSKNASKSGGNG 175 (407)
Q Consensus 112 d~~~~~---~~~~~~~~~~~~~~~------------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 175 (407)
++.... ....+..|...+... |+.+++||.......+..+...+....... ....+++++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 166 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred EeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC
Confidence 987653 334444444433222 899999995444444555555443333322 3456888999999
Q ss_pred CCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCE
Q 046899 176 DKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNL 254 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 254 (407)
+++|| ..+....+.. |...|.+++|+|++ . +++++.||.|++||+++++ ....+..|...|.+++|+| ++ .
T Consensus 167 i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~-~ 238 (313)
T 3odt_A 167 IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKLLP-NG-D 238 (313)
T ss_dssp EEEEE--TTEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TS-C
T ss_pred EEEEe--cCceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh--hhhhhhcCCceEEEEEEec-CC-C
Confidence 99999 4455666666 89999999999998 5 9999999999999999888 6778889999999999999 76 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 255 ILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 255 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
|++++.||.|++||+++ ++++..+..|...|.+++|+|+++ + ++++.||.|++||+++.+.....
T Consensus 239 l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKEN------GSLKQVITLPAISIWSVDCMSNGD-I-IVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEETTSEEEEECTTT------CCEEEEEECSSSCEEEEEECTTSC-E-EEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEecCCEEEEEECCC------CceeEEEeccCceEEEEEEccCCC-E-EEEeCCCcEEEEeCCCCceeehh
Confidence 88999999999999999 889999999999999999999998 5 47899999999999986655433
No 92
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.6e-31 Score=241.02 Aligned_cols=236 Identities=17% Similarity=0.255 Sum_probs=189.3
Q ss_pred CcceeeEEEeeCCCceEEEEEeCCC--CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccc
Q 046899 71 SPFVKKFKTIIHPGEVNRIRELPQN--SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSAL 148 (407)
Q Consensus 71 ~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~ 148 (407)
.|........+|.+.|++++|+|+. +++|++|+.||.|++||+.+...
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~------------------------------ 76 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ------------------------------ 76 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC------------------------------
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc------------------------------
Confidence 3333344445899999999999944 79999999999999999975210
Q ss_pred ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899 149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS 228 (407)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 228 (407)
.....+.+|...|.+++|+|++ .+|++++.||.|++||+++++
T Consensus 77 ------------------------------------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~ 119 (368)
T 3mmy_A 77 ------------------------------------TIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQ 119 (368)
T ss_dssp ------------------------------------EEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred ------------------------------------eeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCC
Confidence 1124566799999999999998 899999999999999999877
Q ss_pred CCceeeecccCcceEEEEe--cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC------------------
Q 046899 229 TPAVKVEKAHNADIHCVDW--NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS------------------ 288 (407)
Q Consensus 229 ~~~~~~~~~~~~~v~~l~~--~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~------------------ 288 (407)
.. ....|...|.+++| +| ++++|++++.||.|++||+++ ++++..+..|.
T Consensus 120 --~~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 3mmy_A 120 --AI-QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRS------SNPMMVLQLPERCYCADVIYPMAVVATAE 189 (368)
T ss_dssp --EE-EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSC------SSCSEEEECSSCEEEEEEETTEEEEEEGG
T ss_pred --ce-eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCC------CcEEEEEecCCCceEEEecCCeeEEEeCC
Confidence 33 45689999999999 88 889999999999999999998 66666555432
Q ss_pred -----------------------CCEEEEEEcCCCCC---EEEEeeCCCeEEEEeCCCC---CcccccccCCC-------
Q 046899 289 -----------------------AAVLCVQWSPDKSS---VFGSSAEDGILNIWDHEKI---GEKQDYGELKY------- 332 (407)
Q Consensus 289 -----------------------~~v~~v~~~~~~~~---ll~s~~~d~~i~vwd~~~~---~~~~~~~~~~~------- 332 (407)
..+.++++.++... .+++++.|+.|++||++.. .....+..|..
T Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence 33445555544432 1479999999999999986 34455556554
Q ss_pred -----cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 333 -----PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 333 -----~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+|++++|+|+ +..|++++.|+.|+|||+. +++++..+.+|...|++++||+
T Consensus 270 ~~~~~~v~~~~~sp~------------------~~~l~s~~~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPV------------------HGTLATVGSDGRFSFWDKD------ARTKLKTSEQLDQPISACCFNH 325 (368)
T ss_dssp CEEECCEEEEEECTT------------------TCCEEEEETTSCEEEEETT------TTEEEEECCCCSSCEEEEEECT
T ss_pred cccccceEEEEEecC------------------CCEEEEEccCCeEEEEECC------CCcEEEEecCCCCCceEEEECC
Confidence 6888888887 8899999999999999998 7888888999999999999986
No 93
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-30 Score=234.18 Aligned_cols=272 Identities=15% Similarity=0.166 Sum_probs=214.2
Q ss_pred cccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899 33 HNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL 109 (407)
Q Consensus 33 ~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~ 109 (407)
..+.-+..++.|.|+ +++++.++.+++|. .. . ........+|.+.|.+++|+| ++++|++++.||.|+
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd---~~--~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWY---SL--N---GERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIK 99 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEE---TT--T---CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEe---CC--C---chhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEE
Confidence 345567778899874 88899999999992 11 1 112334447999999999999 889999999999999
Q ss_pred EEeCcCCCCcccccCcCCCC------CCC--------C-----CcEEEEeccccccc-------------cccCCC--CC
Q 046899 110 IWDVEAQPNRHAVLGAADSH------PDL--------D-----QSVVLWSIQDHVSA-------------LAAEPG--SA 155 (407)
Q Consensus 110 vwd~~~~~~~~~~~~~~~~~------~~~--------d-----~~i~~w~~~~~~~~-------------~~~~~~--~~ 155 (407)
+||+.+++....+. +...+ ++. + +.+.+|++...... +..+.. .+
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999887665554 22111 111 3 89999998865321 111111 22
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
..+........+++++.++.+++||+.+ .+.+..+..|...|.+++|+|++ .+|++++.|+.|++||+++++ ....
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~--~~~~ 255 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ--VLKK 255 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEE
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc--eeee
Confidence 2233333445688899999999999998 77888888999999999999998 899999999999999999887 4555
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCC--------------cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADN--------------SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK 300 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 300 (407)
+. +...+.+++|+| ++.++++++.++ .+++||... ++++..+.+|...|++++|+|++
T Consensus 256 ~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 256 YE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF------EEEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp EE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTT------CCEEEEEECCSSCEEEEEECTTS
T ss_pred ec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCC------CcchhheecccCcEEEEEECCCC
Confidence 43 788999999999 899999999988 899999998 89999999999999999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899 301 SSVFGSSAEDGILNIWDHEKIGEKQD 326 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~~~~~~~~ 326 (407)
++| ++++.||.|++|+++.......
T Consensus 328 ~~l-~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 328 TSY-ASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp SEE-EEEETTSEEEEEEECHHHHTCC
T ss_pred CEE-EEEcCCCeEEEEECccccchhH
Confidence 955 7999999999999997554433
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.8e-30 Score=243.88 Aligned_cols=268 Identities=16% Similarity=0.185 Sum_probs=190.9
Q ss_pred CeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC
Q 046899 38 PSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV 113 (407)
Q Consensus 38 p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 113 (407)
...++.|.| .+++|+.|+.++|| ++.... ........+|.+.|++|+|+|.++++|+||+.||+|++||+
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lW---d~~~~~---~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLW---NFGIKD---KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEE---CSSCCS---CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEE---ECCCCC---ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 456789987 38899999999999 322221 12233445899999999999978899999999999999999
Q ss_pred cCCCCcccccCcCC--CC------CC--------CCCcEEEEeccccc-cccccCCCCCcccccCCCCC-ccccccCCCC
Q 046899 114 EAQPNRHAVLGAAD--SH------PD--------LDQSVVLWSIQDHV-SALAAEPGSAKSTASGGANS-KNASKSGGNG 175 (407)
Q Consensus 114 ~~~~~~~~~~~~~~--~~------~~--------~d~~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 175 (407)
.+.........+.. .+ ++ .|+.|++||++... ..+..+...+..+....... .+++++.|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 86543222211111 11 11 18999999997653 23445555555444444433 5677899999
Q ss_pred CCCCCCCCcCceee---EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc------ceEEEE
Q 046899 176 DKPLESPSIGARGK---YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA------DIHCVD 246 (407)
Q Consensus 176 i~i~d~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~v~~l~ 246 (407)
+++||+...+.... ..+|...|++++|+|++ .+|++++.||.|++||++++. ....+..|.. .+....
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWD--CPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSS--SEEEECCCCCCCCSSSCCCBCE
T ss_pred eeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCc--cceEEecccccccccceeEEEE
Confidence 99999987665443 35799999999999999 899999999999999999887 3444434332 223455
Q ss_pred ecCCCCCEEEEEe------------CCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEE-EEcCCCCCEEEEeeCCCe
Q 046899 247 WNPHDVNLILTGS------------ADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCV-QWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 247 ~~~~~~~~l~tg~------------~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v-~~~~~~~~ll~s~~~d~~ 312 (407)
|+| ++.+++++. .++.|++||..+ ++.+..+. +|...|.++ +|+|+|.+| |+|+ |++
T Consensus 352 ~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~------g~~~~~l~~~~~~~v~s~~~fspdg~~l-asg~-d~~ 422 (435)
T 4e54_B 352 WHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS------GKMMCQLYDPESSGISSLNEFNPMGDTL-ASAM-GYH 422 (435)
T ss_dssp ECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS------CCEEEEECCSSCCCCCCEEEECTTSSCE-EEEC-SSE
T ss_pred EcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC------CcEEEEEeCCCCCcEEEEEEECCCCCEE-EEEc-CCc
Confidence 666 555555543 346799999998 88888765 588889888 699999965 6765 889
Q ss_pred EEEEeCCCCCc
Q 046899 313 LNIWDHEKIGE 323 (407)
Q Consensus 313 i~vwd~~~~~~ 323 (407)
|+|||++.++.
T Consensus 423 i~iW~~~~gk~ 433 (435)
T 4e54_B 423 ILIWSQQEART 433 (435)
T ss_dssp EEECCCC----
T ss_pred EEEEECCcCee
Confidence 99999998654
No 95
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.8e-30 Score=228.09 Aligned_cols=217 Identities=9% Similarity=0.072 Sum_probs=168.5
Q ss_pred CCCceEEEEEeCCC----CeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 82 HPGEVNRIRELPQN----SKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 82 h~~~v~~l~~~~~~----~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
|.+.|++|+|+| + ++++++++. .+++|++.+++.+.. ..+| |+.|++|++.
T Consensus 110 ~~~~v~sla~sp-d~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~-------d~~V~~~~~s-------------- 165 (356)
T 2w18_A 110 EIREIRALFCSS-DDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLS-------DQQVEVMTFA-------------- 165 (356)
T ss_dssp SEEEEEEECC-------CCEEEEEEEE--EEEEEEETTTEEEEEESSST-------TCEEEEEEEC--------------
T ss_pred cccceEEEEECC-CccccccEEEeCCC--eEEEEecCCCcEEEecccCC-------CCcEEEEEEC--------------
Confidence 567899999999 7 889999885 488999876554443 2223 6778888875
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC---CCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP---SSAQEFCSVGDDSCLILWDARSGSTPAVK 233 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 233 (407)
+.++.+..+..|...++.++|+| ++ .+|++|+.|++|++||+++++ ++.
T Consensus 166 -------------------------~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk--~l~ 217 (356)
T 2w18_A 166 -------------------------EDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ--LLK 217 (356)
T ss_dssp -------------------------TTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC--EEE
T ss_pred -------------------------CCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc--EEE
Confidence 33456677788999999999998 56 799999999999999999998 677
Q ss_pred eecccC---cceEEEEecCCCCCEE------------EEEeCCCcEEEEeCCCCCCCCCCCceeee-----cCCCCCEEE
Q 046899 234 VEKAHN---ADIHCVDWNPHDVNLI------------LTGSADNSIHMFDRRKLTSDGVGSPIHKF-----EGHSAAVLC 293 (407)
Q Consensus 234 ~~~~~~---~~v~~l~~~~~~~~~l------------~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~h~~~v~~ 293 (407)
++.+|. ..+.+++|+| ++.++ ++|+.|++|++||..+ ++.+..+ .+|...+.+
T Consensus 218 tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t------gk~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 218 KMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKT------TLSVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp EEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTT------TEEEEEEEECCCTTCCCCEEE
T ss_pred EEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCC------CEEEEEEEeeccCCCcceeEc
Confidence 776654 3677889999 88876 6688999999999998 7776655 367666655
Q ss_pred EEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccC-CCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899 294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIH-PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV 372 (407)
Q Consensus 294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 372 (407)
..++ +. ++|+++.|++|+|||+.+++.+.++.+|...+.. ++|||| +.+|++|+.|++
T Consensus 291 g~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD------------------G~~LaSGS~D~T 349 (356)
T 2w18_A 291 GDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT------------------DSHLLAGQKDGN 349 (356)
T ss_dssp EEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS------------------SSEEEEECTTSC
T ss_pred cccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC------------------CCEEEEEECCCc
Confidence 5554 55 5689999999999999999999999988877665 799999 899999999999
Q ss_pred EEEeec
Q 046899 373 LEIWRM 378 (407)
Q Consensus 373 i~iwd~ 378 (407)
|||||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999996
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.3e-30 Score=234.31 Aligned_cols=252 Identities=17% Similarity=0.214 Sum_probs=184.6
Q ss_pred cCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEE
Q 046899 35 LVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLI 110 (407)
Q Consensus 35 ~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~v 110 (407)
+.-+..++.|.| .+++++.|+.+++|-.. . ........+.+|.+.|++++|+|+ ++++|++|+.|++|++
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~-----~-~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-----N-GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEE-----T-TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEec-----C-CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 444677788877 48899999999999221 1 111223455689999999999863 4789999999999999
Q ss_pred EeCcCCCC--cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc--
Q 046899 111 WDVEAQPN--RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-- 186 (407)
Q Consensus 111 wd~~~~~~--~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-- 186 (407)
||+.++.. ...+.+|...+. .+.+.+ . .....+++++.|+.+++||......
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~----------------~v~~~p-------~-~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVN----------------SVCWAP-------H-DYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCC----------------EEEECC-------T-TTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred EECCCCcceEEEEccCCCCceE----------------EEEECC-------C-CCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 99987532 223333332211 111111 1 0124578899999999999876532
Q ss_pred -eeeEeecccCEEEEEECCCC----------------CcEEEEEeCCCcEEEEEcCCCCC-CceeeecccCcceEEEEec
Q 046899 187 -RGKYLGHEDTVEDVQFCPSS----------------AQEFCSVGDDSCLILWDARSGST-PAVKVEKAHNADIHCVDWN 248 (407)
Q Consensus 187 -~~~~~~~~~~v~~l~~~~~~----------------~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~~ 248 (407)
...+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.... .....+.+|...|.+++|+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence 34556799999999999973 15899999999999999975421 2456778999999999999
Q ss_pred CCCC----CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 249 PHDV----NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 249 ~~~~----~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
| ++ .+|++|+.||+|++||++..... ......+..|...|.+++|+|++.+| |+++.|++|++|+...
T Consensus 222 p-~~~~~~~~las~s~D~~v~iw~~~~~~~~--~~~~~~~~~~~~~v~~v~~sp~g~~l-as~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 222 P-SIGLPTSTIASCSQDGRVFIWTCDDASSN--TWSPKLLHKFNDVVWHVSWSITANIL-AVSGGDNKVTLWKESV 293 (316)
T ss_dssp C-CSSCSCCEEEEEETTCEEEEEECSSTTCC--CCBCCEEEECSSCEEEEEECTTTCCE-EEEESSSCEEEEEECT
T ss_pred C-CCCCCCceEEEEcCCCeEEEEEccCcccc--chhhhhhhcCCCcEEEEEEcCCCCEE-EEEcCCCeEEEEEECC
Confidence 9 54 89999999999999999762110 11233456688999999999999965 7999999999999764
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.3e-30 Score=243.84 Aligned_cols=265 Identities=16% Similarity=0.197 Sum_probs=210.9
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
-.++.|+|++ + ++||+|. |++|+|||..+++....+..+.. ...+..+.....
T Consensus 106 ~y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~------------------------~~~V~sv~fspd 158 (420)
T 4gga_A 106 YYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQP------------------------GEYISSVAWIKE 158 (420)
T ss_dssp TTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCST------------------------TCCEEEEEECTT
T ss_pred ccceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCC------------------------CCcEEEEEECCC
Confidence 3478899997 3 4888876 89999999998876554432211 111111222223
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH 243 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 243 (407)
...+++++.|+.+++||..+++.+..+.+|...+.++++++ .+|++|+.|+.+++||.+.... ....+.+|...+.
T Consensus 159 g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~-~~~~~~~h~~~~~ 234 (420)
T 4gga_A 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVC 234 (420)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEE
T ss_pred CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce-eeEEeccccccee
Confidence 35688899999999999999999999999999999999864 6899999999999999987664 4667789999999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe--eCCCeEEEEeCCCC
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGILNIWDHEKI 321 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~--~~d~~i~vwd~~~~ 321 (407)
.+.|+| ++.++++++.|+.+++||....... ...+.....|...|.+++|+|++..+++++ +.|++|++||+.++
T Consensus 235 ~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 235 GLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred eeeecC-CCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 999999 9999999999999999999873211 235677788999999999999998887764 47999999999998
Q ss_pred CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE--EeeeEEEeeccccccCChHHHHHHHhhcccc
Q 046899 322 GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT--MVKVLEIWRMIDLIYRPEEEVLAELDKFKSH 399 (407)
Q Consensus 322 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 399 (407)
+....+..+. .+..+.|+++ +..+++++ .|+.|+|||+. +++++..+.||.+.
T Consensus 312 ~~~~~~~~~~-~v~~~~~~~~------------------~~~lv~~sg~~d~~I~iwd~~------~~~~v~~l~gH~~~ 366 (420)
T 4gga_A 312 ACLSAVDAHS-QVCSILWSPH------------------YKELISGHGFAQNQLVIWKYP------TMAKVAELKGHTSR 366 (420)
T ss_dssp EEEEEEECSS-CEEEEEEETT------------------TTEEEEEECTTTCCEEEEETT------TCCEEEEECCCSSC
T ss_pred ccceeecccc-ceeeeeecCC------------------CCeEEEEEecCCCEEEEEECC------CCcEEEEEcCCCCC
Confidence 8777665543 4555555555 66666554 68999999998 78888999999999
Q ss_pred eeEeeccC
Q 046899 400 IFGCDKSC 407 (407)
Q Consensus 400 v~~~~~s~ 407 (407)
|++++||+
T Consensus 367 V~~l~~sp 374 (420)
T 4gga_A 367 VLSLTMSP 374 (420)
T ss_dssp EEEEEECT
T ss_pred EEEEEEcC
Confidence 99999986
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-30 Score=236.85 Aligned_cols=224 Identities=10% Similarity=0.058 Sum_probs=168.7
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN 174 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (407)
++++|++|+.||+|++||+.+++....+... . ...+..++ .+++++.|+
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~--~----------------v~~~~~~~-------------~~~s~s~D~ 95 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTP--N----------------PRTGGEHP-------------AIISRGPCN 95 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEEE--C----------------CCTTCCCC-------------SEEEECSTT
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEecC--C----------------ceeeeeCC-------------ceEEecCCC
Confidence 6789999999999999999987655443210 0 00000000 044555555
Q ss_pred CCCCCC---------CCCcCceeeEe-ecccCEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCCCceeee-cccCcc
Q 046899 175 GDKPLE---------SPSIGARGKYL-GHEDTVEDVQFCP--SSAQEFCSVGDDSCLILWDARSGSTPAVKVE-KAHNAD 241 (407)
Q Consensus 175 ~i~i~d---------~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 241 (407)
.+++|+ ..+++.+..+. +|...|.+++|+| ++ .+|++++.||.|++||+++++ ..... ..+...
T Consensus 96 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~~ 172 (343)
T 3lrv_A 96 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDS--QYIVHSAKSDVE 172 (343)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSC--EEEEECCCSSCC
T ss_pred eEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCc--EEEEEecCCCCc
Confidence 555554 34555444444 6778999999999 88 899999999999999999887 44433 345668
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce-eeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI-HKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
+.+++|+| ++.+|++|+.||.|++||+++ ++.+ ..+.. |..+|++++|+|++.+| ++++ |+.|++||++
T Consensus 173 i~~~~~~p-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~l~fs~~g~~l-~s~~-~~~v~iwd~~ 243 (343)
T 3lrv_A 173 YSSGVLHK-DSLLLALYSPDGILDVYNLSS------PDQASSRFPVDEEAKIKEVKFADNGYWM-VVEC-DQTVVCFDLR 243 (343)
T ss_dssp CCEEEECT-TSCEEEEECTTSCEEEEESSC------TTSCCEECCCCTTSCEEEEEECTTSSEE-EEEE-SSBEEEEETT
T ss_pred eEEEEECC-CCCEEEEEcCCCEEEEEECCC------CCCCccEEeccCCCCEEEEEEeCCCCEE-EEEe-CCeEEEEEcC
Confidence 99999999 999999999999999999998 6766 78888 99999999999999965 6888 5599999999
Q ss_pred CCCccccccc---CCCcccC--CCCcCcchhccccceeeeeEeeCccceeeeEEE-eeeEEEeecc
Q 046899 320 KIGEKQDYGE---LKYPIIH--PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMI 379 (407)
Q Consensus 320 ~~~~~~~~~~---~~~~v~~--~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~ 379 (407)
+.+....+.. +..++.. ++|+|+ +.++++++. |+.|+||++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 244 KDVGTLAYPTYTIPEFKTGTVTYDIDDS------------------GKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp SSTTCBSSCCCBC-----CCEEEEECTT------------------SSEEEEEETTTTEEEEEEEC
T ss_pred CCCcceeecccccccccccceEEEECCC------------------CCEEEEecCCCCcEEEEEEc
Confidence 9877666554 4444443 777776 889999998 9999999985
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.4e-30 Score=241.87 Aligned_cols=276 Identities=13% Similarity=0.156 Sum_probs=189.4
Q ss_pred CCCeeEEEEeec---ccccCccceEEEEeecccCccc------CCcceeeEEEeeCC------------CceEEEEEeCC
Q 046899 36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEA------RSPFVKKFKTIIHP------------GEVNRIRELPQ 94 (407)
Q Consensus 36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~h~------------~~v~~l~~~~~ 94 (407)
.-+..++.|.|+ +++++.|+.+++|-.. ... ..+........+|. +.|++++|+|
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~---~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~- 103 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQE---QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP- 103 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEEC---C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEec---CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-
Confidence 346678899884 8899999999999332 111 11122234455798 8899999999
Q ss_pred CC--eEEEEeeCCCcEEEEeCcCCCCccc---ccCcCC------CCCCC-CCcEE--EEecccc-c-cccccCCCCCccc
Q 046899 95 NS--KIVATHTDSPDVLIWDVEAQPNRHA---VLGAAD------SHPDL-DQSVV--LWSIQDH-V-SALAAEPGSAKST 158 (407)
Q Consensus 95 ~~--~~l~tg~~dg~i~vwd~~~~~~~~~---~~~~~~------~~~~~-d~~i~--~w~~~~~-~-~~~~~~~~~~~~~ 158 (407)
++ .+|++++.||+|++||+.++..... +..+.. ..... -..+. -|.+... . .....+...+..+
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 55 7899999999999999986433211 000000 00000 00000 0000000 0 0112334444444
Q ss_pred ccCCCCCccccccCCCCCCCCCCCC-cCcee-------eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPS-IGARG-------KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~-------~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
........++++ .|+.+++||+.. .+.+. .+.+|...|.+++|+|+++.+|++|+.||.|++||++++...
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 444444567777 799999999984 43433 245799999999999997679999999999999999987721
Q ss_pred --ceeeecccCc------------ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC------
Q 046899 231 --AVKVEKAHNA------------DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA------ 290 (407)
Q Consensus 231 --~~~~~~~~~~------------~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~------ 290 (407)
....+..|.. .|.+++|+| ++++|++++. +.|++||++.. ++++..+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNME-----NRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCC-----SSCSCCEESCGGGTTTHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCC-----ccccceeeccccccccccc
Confidence 1456667765 899999999 9999999998 99999999863 4678888887542
Q ss_pred ---------EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 291 ---------VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 291 ---------v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
+..++|+|++++| ++|+.||.|++||+.+++.+
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTCCEE
T ss_pred cccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCCcce
Confidence 3349999999976 79999999999999986654
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-31 Score=248.82 Aligned_cols=220 Identities=17% Similarity=0.245 Sum_probs=174.3
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA 159 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
.+|.+.|++++|+|.++++||+|+.||+|+|||+.+......
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-------------------------------------- 101 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-------------------------------------- 101 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC--------------------------------------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc--------------------------------------
Confidence 468999999999996788999999999999999875211000
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC---CCCCCceeeec
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR---SGSTPAVKVEK 236 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~ 236 (407)
.+....+ +|...|.+++|+|++ .+|++|+.||.|++||++ +++ ......
T Consensus 102 ------------------------~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~ 153 (437)
T 3gre_A 102 ------------------------YSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQES--EVKFLN 153 (437)
T ss_dssp ------------------------CSCSEEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETT--EEEEEE
T ss_pred ------------------------cceeeec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCc--eeeccc
Confidence 0111222 588999999999988 899999999999999995 443 222222
Q ss_pred c------------cCcceEEEE--ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcCCC
Q 046899 237 A------------HNADIHCVD--WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSPDK 300 (407)
Q Consensus 237 ~------------~~~~v~~l~--~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~ 300 (407)
. +...+.++. +++ ++.+|++|+.||.|++||+++ ++++..+.. |...|++++|+|++
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 154 CECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRT------LERLQIIENSPRHGAVSSICIDEEC 226 (437)
T ss_dssp EEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTT------CCEEEEEECCGGGCCEEEEEECTTS
T ss_pred cceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC------CeeeEEEccCCCCCceEEEEECCCC
Confidence 1 445566666 456 789999999999999999999 889999988 88999999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCC----CCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEE
Q 046899 301 SSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHP----AYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEI 375 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~----~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~i 375 (407)
.+| ++|+.||.|++||+++++.+..+. .+..+|+++ .|+++ +..|++++.|++|+|
T Consensus 227 ~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~------------------~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 227 CVL-ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN------------------SVIVVGGSSKTFLTI 287 (437)
T ss_dssp CEE-EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT------------------EEEEEEESTTEEEEE
T ss_pred CEE-EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC------------------ccEEEEEcCCCcEEE
Confidence 855 799999999999999988877765 677788888 55555 778999999999999
Q ss_pred eeccccccCChHHHHHHHhhcc
Q 046899 376 WRMIDLIYRPEEEVLAELDKFK 397 (407)
Q Consensus 376 wd~~~~~~~~~~~~~~~~~~h~ 397 (407)
||+. +++++..+.+|.
T Consensus 288 wd~~------~~~~~~~~~~~~ 303 (437)
T 3gre_A 288 WNFV------KGHCQYAFINSD 303 (437)
T ss_dssp EETT------TTEEEEEEESSS
T ss_pred EEcC------CCcEEEEEEcCC
Confidence 9998 455444444443
No 101
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3.1e-30 Score=236.76 Aligned_cols=277 Identities=17% Similarity=0.189 Sum_probs=207.0
Q ss_pred cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
..-|..++.|.|+ +++++.++.+++|-.. ...........+|.+.|++++|+| ++++|++|+.||.|++|
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~------~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS------GNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEE------TTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC------CCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEE
Confidence 3446778888875 7788899999999221 111113344457999999999999 88999999999999999
Q ss_pred eCcCCCCcccc--cCcCCCCC------CC--------CCcEEEEecccccc-----cc-ccCCCCCcccccCCCCCcccc
Q 046899 112 DVEAQPNRHAV--LGAADSHP------DL--------DQSVVLWSIQDHVS-----AL-AAEPGSAKSTASGGANSKNAS 169 (407)
Q Consensus 112 d~~~~~~~~~~--~~~~~~~~------~~--------d~~i~~w~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~ 169 (407)
|+.+++..... ..+...+. +. ++.+.+|++..... .+ ..+...+..+........+++
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 99877533222 22322211 11 89999999987642 11 223344444444455567889
Q ss_pred ccCCCCCCCCCC------------------CCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899 170 KSGGNGDKPLES------------------PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA 231 (407)
Q Consensus 170 ~~~~~~i~i~d~------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 231 (407)
++.++.+++||+ ..++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++ .
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~ 236 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM--A 236 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT--E
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc--e
Confidence 999999999994 4677888888999999999999998 799999999999999999888 6
Q ss_pred eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC----------------------------CCCCCce--
Q 046899 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS----------------------------DGVGSPI-- 281 (407)
Q Consensus 232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~----------------------------~~~~~~~-- 281 (407)
...+..|...|.+++|+| ++.++++| .|+.|++||++.... +..+...
T Consensus 237 ~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 1k8k_C 237 VATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 314 (372)
T ss_dssp EEEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred eEEEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence 778889999999999999 88888887 899999999976100 0001111
Q ss_pred ----eee-cCCCCCEEEEEEc-CCC---CCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 282 ----HKF-EGHSAAVLCVQWS-PDK---SSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 282 ----~~~-~~h~~~v~~v~~~-~~~---~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
..+ .+|..+|++++|+ ++| . +|+||+.||.|++||+++++.+
T Consensus 315 ~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 315 AAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp ----CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEEEHHHHHHH
T ss_pred ccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEEEEecChhHh
Confidence 333 4899999999977 554 6 5579999999999999875543
No 102
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=2.4e-29 Score=238.13 Aligned_cols=294 Identities=13% Similarity=0.147 Sum_probs=214.4
Q ss_pred hhhhhhhccCceEEEeeeecccCCCeeEEEEee--cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE
Q 046899 14 DRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGP--QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE 91 (407)
Q Consensus 14 ~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 91 (407)
-.+++|+....-....+. .+.-+...+.|.| .+++++.|+.+++| +.... .......+|.+.|.+++|
T Consensus 142 g~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~l~s~s~dg~i~vw---d~~~~-----~~~~~~~~h~~~v~~l~~ 211 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTVRVW---DIKKG-----CCTHVFEGHNSTVRCLDI 211 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTTEEEEEETTSCEEEE---ETTTT-----EEEEEECCCSSCEEEEEE
T ss_pred CcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCCEEEEEeCCCCEEEE---ECCCC-----cEEEEECCCCCccEEEEE
Confidence 346677755554433332 3455777888887 48899999999999 22111 123344479999999999
Q ss_pred eC-CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccc---cccccCCCCCcccccCCCCCcc
Q 046899 92 LP-QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHV---SALAAEPGSAKSTASGGANSKN 167 (407)
Q Consensus 92 ~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 167 (407)
++ .++++|++|+.||+|++||+.+............ ............ .....+...+... ......+
T Consensus 212 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l 283 (464)
T 3v7d_B 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD------YPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIV 283 (464)
T ss_dssp EESSSCEEEEEEETTSCEEEEECCCCCCC------CC------SSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEE
T ss_pred ecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC------cceEeeccCCCeEEEEEccCccceEEEE--cCCCCEE
Confidence 85 3778999999999999999987764432211100 001110000000 0111111111111 1223468
Q ss_pred ccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEe
Q 046899 168 ASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDW 247 (407)
Q Consensus 168 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 247 (407)
++++.++.+++||+.+++.+..+.+|...|.+++|+|++ .++++|+.||.|++||+++++ ....+.+|...|.+++|
T Consensus 284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRL 360 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEE
Confidence 889999999999999999999999999999999999998 799999999999999999988 68888899999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc-
Q 046899 248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD- 326 (407)
Q Consensus 248 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~- 326 (407)
++ .+|++|+.||.|++||+++ ........ |...+..++|+|++.. +++|+ |+.|++||+++++.+..
T Consensus 361 ~~---~~l~s~s~dg~v~vwd~~~------~~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~-dg~i~iwd~~~g~~~~~~ 428 (464)
T 3v7d_B 361 SD---KFLVSAAADGSIRGWDAND------YSRKFSYH-HTNLSAITTFYVSDNI-LVSGS-ENQFNIYNLRSGKLVHAN 428 (464)
T ss_dssp CS---SEEEEEETTSEEEEEETTT------CCEEEEEE-CTTCCCEEEEEECSSE-EEEEE-TTEEEEEETTTCCEEESC
T ss_pred cC---CEEEEEeCCCcEEEEECCC------Cceeeeec-CCCCccEEEEEeCCCE-EEEec-CCeEEEEECCCCcEEehh
Confidence 74 7999999999999999998 56665554 6777888999999985 46777 99999999999888875
Q ss_pred cccCCCcccCCCCc
Q 046899 327 YGELKYPIIHPAYS 340 (407)
Q Consensus 327 ~~~~~~~v~~~~~s 340 (407)
+..+..+|++++|+
T Consensus 429 ~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 429 ILKDADQIWSVNFK 442 (464)
T ss_dssp TTTTCSEEEEEEEE
T ss_pred hccCCCcEEEEEec
Confidence 56677777777663
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-31 Score=245.88 Aligned_cols=256 Identities=8% Similarity=-0.003 Sum_probs=192.2
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC----CCcEEEEeccccc--cccc-cCCCC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----DQSVVLWSIQDHV--SALA-AEPGS 154 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----d~~i~~w~~~~~~--~~~~-~~~~~ 154 (407)
-...|.+|+|+| ||+++||++.|++|+ |....+ .+.+|...+-.. +|.+..|++.... ..+. .+...
T Consensus 14 ~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T 2j04_A 14 FEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY 87 (588)
T ss_dssp CSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred hhccEEEEEECC-CCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence 467899999999 999999999999999 755443 334554433222 4555555555432 2222 22444
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc-----CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED-----TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
+..++..+.+..+++++.+|.+++||... .+..+. |.. .|.+++|+|+| ++|++|+.||+|++||+..+..
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTT
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCcc
Confidence 55566666777799999999999999654 555555 655 59999999999 8999999999999999998752
Q ss_pred --C---ceeee----cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC---ceeee-cCCCCCEEEEEE
Q 046899 230 --P---AVKVE----KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGS---PIHKF-EGHSAAVLCVQW 296 (407)
Q Consensus 230 --~---~~~~~----~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~---~~~~~-~~h~~~v~~v~~ 296 (407)
+ ....+ .+|...|.+++|+| ++ +++++.|+.|++||+.. .. ...++ .+|...|.+++|
T Consensus 164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~------~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 164 NTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSA------SSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp TCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCS------SSSCCCEEEEECCCSSCCCCEEE
T ss_pred ccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCC------CccccceeeecccccCcEEEEEE
Confidence 1 13444 66788999999999 77 88889999999999987 44 34567 478899999999
Q ss_pred cCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC--cCcchhccccceeeeeEeeCccceeeeEEEeeeEE
Q 046899 297 SPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY--SSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLE 374 (407)
Q Consensus 297 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~ 374 (407)
+ |. .+|+++ +++|++||+...+......+|...++.++| +|| +..|+++..||+ +
T Consensus 235 s--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d------------------~~~La~a~edG~-k 291 (588)
T 2j04_A 235 V--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE------------------STILLMSNKTSY-K 291 (588)
T ss_dssp E--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS------------------CEEEEECSSCEE-E
T ss_pred E--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC------------------CCEEEEEcCCCC-E
Confidence 9 45 456776 799999999986653434379999999999 888 556666666777 7
Q ss_pred Eeecc
Q 046899 375 IWRMI 379 (407)
Q Consensus 375 iwd~~ 379 (407)
+|...
T Consensus 292 lw~~d 296 (588)
T 2j04_A 292 VLLED 296 (588)
T ss_dssp EEESS
T ss_pred EEeec
Confidence 77653
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=246.31 Aligned_cols=288 Identities=9% Similarity=0.025 Sum_probs=205.7
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC---CcccccCcCCCCCC--------C---------C-CcE-----
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP---NRHAVLGAADSHPD--------L---------D-QSV----- 136 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~--------~---------d-~~i----- 136 (407)
..++.+++|+| ++++|+++. ++.|++||+.+++ .+.....+...... . + ...
T Consensus 4 ~~p~~~v~~s~-dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSR-DGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECS-SSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecC-CCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 35789999999 777776664 6799999999887 44443322210000 0 0 000
Q ss_pred -----EEEeccccccccccCCCCCcccccCCCCCcc-ccccCCCCCCCCCCC--CcCceeeEe--ecccCEEEEEECCCC
Q 046899 137 -----VLWSIQDHVSALAAEPGSAKSTASGGANSKN-ASKSGGNGDKPLESP--SIGARGKYL--GHEDTVEDVQFCPSS 206 (407)
Q Consensus 137 -----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~d~~--~~~~~~~~~--~~~~~v~~l~~~~~~ 206 (407)
..+...........+...+..+........+ ++++.++.+++||+. .++.+..+. .|...|.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 0000000000011111223333444444554 778899999999998 888888876 567899999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecCCC---CCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899 207 AQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNPHD---VNLILTGSADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 207 ~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~~~---~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
.+|++|+.||.|++|++.++... ....+.+|...|.+++|+| + +++|++|+.|+.|++||++. ++.+
T Consensus 162 -~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~------~~~~ 233 (450)
T 2vdu_B 162 -TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQ------CFIV 233 (450)
T ss_dssp -SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESC------TTCE
T ss_pred -CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCC------Ccee
Confidence 89999999999999999887632 2236678999999999999 7 88999999999999999998 7778
Q ss_pred ee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCC-------------------------Cccc
Q 046899 282 HK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK-------------------------YPII 335 (407)
Q Consensus 282 ~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------------------~~v~ 335 (407)
.. +.+|...|++++|+ ++.+| ++++.|++|++||+++++.+..+..+. ..+.
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLL-LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEE-EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeecCCCCceEEEEEC-CCCEE-EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 77 56899999999999 88855 799999999999999988776664321 1222
Q ss_pred CCCCcCcchhccccceeeeeEeeCccceeeeEE-EeeeEEEeec--cccccCChH---HHHHHHhhcccceeEeeccC
Q 046899 336 HPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRM--IDLIYRPEE---EVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 336 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~--~~~~~~~~~---~~~~~~~~h~~~v~~~~~s~ 407 (407)
+++|+| .+..|++++ .++.|+||++ . .+ +++..+.+| +.|.+++|++
T Consensus 312 ~i~~~~------------------~~~~l~~~~~~d~~i~iw~~~~~------~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 312 KIIKSK------------------NLPFVAFFVEATKCIIILEMSEK------QKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp EEEECS------------------SSSEEEEEETTCSEEEEEEECSS------STTCEEEEEEEECS-SCEEEEEEET
T ss_pred EEEEeC------------------CCCEEEEEECCCCeEEEEEeccC------CCCceeeccEeccC-CceEEEEecC
Confidence 333333 377888888 8999999999 4 33 555667777 7899999975
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.9e-30 Score=234.55 Aligned_cols=273 Identities=15% Similarity=0.143 Sum_probs=193.0
Q ss_pred ecccCCCeeEEEEeec---ccccCc-------cceEEEEeecccCcccCC-----cceeeEEEeeCCCceEEEEEeCCCC
Q 046899 32 NHNLVWPSLSCRWGPQ---LEQATY-------KNRQRLYLSEQFNEEARS-----PFVKKFKTIIHPGEVNRIRELPQNS 96 (407)
Q Consensus 32 ~~~~~~p~~s~~~~~~---~~~~~~-------~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~~~~~~ 96 (407)
.+++.+|.+++.|.|+ +++|+. ++.+++|... ..... .......+.+|...|.++++.+
T Consensus 10 ~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~---~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--- 83 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVD---PTKDTEKEQFHILSEFALEDNDDSPTAIDASK--- 83 (365)
T ss_dssp EEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEEC---TTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---
T ss_pred ecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEc---CCCcceeeeeeeeeEEEccCCCCceEEEEeCC---
Confidence 3467889999999985 666543 4468999432 22111 1122234456888999998754
Q ss_pred eEEEEe-----------eCCCcEEEEeCcCCCCccccc---------CcC------CCCCC----------CCCcEEEEe
Q 046899 97 KIVATH-----------TDSPDVLIWDVEAQPNRHAVL---------GAA------DSHPD----------LDQSVVLWS 140 (407)
Q Consensus 97 ~~l~tg-----------~~dg~i~vwd~~~~~~~~~~~---------~~~------~~~~~----------~d~~i~~w~ 140 (407)
+.+++| +.|+.+|+|++.+........ .+. .+.|+ .|++|++||
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence 345544 568889999987654221110 000 01111 178999999
Q ss_pred cccccccccc-CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee--eEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899 141 IQDHVSALAA-EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG--KYLGHEDTVEDVQFCPSSAQEFCSVGDDS 217 (407)
Q Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~s~~~dg 217 (407)
+.+....... +...+..+...+....+++++ ++.+.+|+..+++.+. ....|...|.+++|+|++ .++++++.|+
T Consensus 164 ~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~ 241 (365)
T 4h5i_A 164 PSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKK 241 (365)
T ss_dssp TTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESS
T ss_pred CCCCcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCC
Confidence 9887543322 333344444444444566665 5566677666666543 344688899999999999 8899998887
Q ss_pred ----cEEEEEcCCCCCCc--eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCC
Q 046899 218 ----CLILWDARSGSTPA--VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAA 290 (407)
Q Consensus 218 ----~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~ 290 (407)
.+++||+....... ...+..|...|++++|+| ++++||+|+.|+.|+|||+++ ++++.++ .+|..+
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~------~~~~~~~~~gH~~~ 314 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKD------LSMSKIFKQAHSFA 314 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEEEEETTSSSSC
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCC------CcEEEEecCcccCC
Confidence 68889987765221 345668899999999999 999999999999999999998 8888875 789999
Q ss_pred EEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
|++|+|+|+|++| ||||.|++|+|||+..
T Consensus 315 V~~v~fSpdg~~l-aS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 315 ITEVTISPDSTYV-ASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEECTTSCEE-EEEETTSEEEEEECCT
T ss_pred EEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Confidence 9999999999965 7999999999999964
No 106
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3e-29 Score=231.49 Aligned_cols=278 Identities=12% Similarity=0.104 Sum_probs=201.0
Q ss_pred hhccCceEEEeeeecccCCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC
Q 046899 19 WKSLVPVLYDWLANHNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ 94 (407)
Q Consensus 19 w~~~~~~~y~~l~~~~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 94 (407)
|......++..+. ...-+..++.|.|. +++++.|+.+++| +... ..........+|.+.|.+++|+|.
T Consensus 58 ~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iw---d~~~---~~~~~~~~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 58 RSLKSYKLHRTAS--PFDRRVTSLEWHPTHPTTVAVGSKGGDIILW---DYDV---QNKTSFIQGMGPGDAITGMKFNQF 129 (383)
T ss_dssp HHHTTCEEEEEEC--CCSSCEEEEEECSSCTTEEEEEEBTSCEEEE---ETTS---TTCEEEECCCSTTCBEEEEEEETT
T ss_pred ccccccceEEecc--CCCCCEEEEEECCCCCCEEEEEcCCCeEEEE---eCCC---cccceeeecCCcCCceeEEEeCCC
Confidence 3334444444443 33456777888874 7899999999999 2221 111222233469999999999997
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCcC---CCC------CCC--------CCcEEEEeccccc-cccccCCCCCc
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA---DSH------PDL--------DQSVVLWSIQDHV-SALAAEPGSAK 156 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~---~~~------~~~--------d~~i~~w~~~~~~-~~~~~~~~~~~ 156 (407)
++++|++|+.|+.|++||+.+. ....+..+. ..+ ++. |+.+.+||+.... ..+..+...+.
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEE
T ss_pred CCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEE
Confidence 7899999999999999999863 333332222 111 111 8999999996432 23444555555
Q ss_pred ccccCCCCC-ccccccCCCCCCCCCCCC----cCceeeEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 157 STASGGANS-KNASKSGGNGDKPLESPS----IGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
.+....... .+++++.|+.+++||+.+ +..+..+ +|...|.+++|+| ++ .+|++++.|+.|++||++++..
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~- 285 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSK- 285 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTS-
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcc-
Confidence 555555555 688899999999999987 4555555 7999999999999 88 8999999999999999998773
Q ss_pred ceeeecccC-----------------cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCE
Q 046899 231 AVKVEKAHN-----------------ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAV 291 (407)
Q Consensus 231 ~~~~~~~~~-----------------~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v 291 (407)
...+..|. ..+..++|+| ++++ +|+.||.|++||+++ ++++.++.+ |...+
T Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~------~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 286 -PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANS------GGLVHQLRDPNAAGII 355 (383)
T ss_dssp -CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTT------CCEEEEECBTTBCSCC
T ss_pred -ccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCC------CceeeeecCCCCCceE
Confidence 33333332 3344566777 5555 778999999999998 888999987 56778
Q ss_pred EEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 292 LCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 292 ~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
..++|+|++++| ++|+ |+.|++||+++
T Consensus 356 ~~~~~s~~g~~l-~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVL-ASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEE-EEEE-TTEEEEEECC-
T ss_pred EEEEEecCccEE-EEec-CCcEEEEecCC
Confidence 888999999955 6887 99999999875
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=4.8e-29 Score=231.51 Aligned_cols=331 Identities=12% Similarity=0.107 Sum_probs=207.4
Q ss_pred hhhhhhhhccCceEEEeeeecccCCCeeEEEEee-c---ccccCccceEEEEeecccCcccCCcceeeEEE--------e
Q 046899 13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGP-Q---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKT--------I 80 (407)
Q Consensus 13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~ 80 (407)
+..+++|..........+.. +.-+...+.|.| + +++++.|+.+++| +............... .
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw---~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERI--HGGGINTLDIEPVEGRYMLSGGSDGVIVLY---DLENSSRQSYYTCKAVCSIGRDHPD 96 (408)
T ss_dssp HHHHHHHTEEECTTEEECCC--CSSCEEEEEECTTTCCEEEEEETTSCEEEE---ECCCCSSSSCEEECEEEEECTTCTT
T ss_pred cCcceeeccccCcceeeeec--cCCcEEEEEEecCCCCEEEEEcCCCeEEEE---ECCCCcccceEeccccccccccccc
Confidence 44456666544333333333 445777889987 3 7889999999999 3332222211111111 1
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC--------CCCC--------CCCcEEEEecccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD--------SHPD--------LDQSVVLWSIQDH 144 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~--------~d~~i~~w~~~~~ 144 (407)
+|.+.|.+++|+|.++++|++++.||.|++||+.+++....+..... ..++ .++.+.+||+.++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 49999999999997888999999999999999998765443321110 0001 1899999999876
Q ss_pred cc--ccccCCCCCcccccCCCCCc-cccccCCCCCCCCCCCCcC-ceeeE---------------eecccCEEEEEECCC
Q 046899 145 VS--ALAAEPGSAKSTASGGANSK-NASKSGGNGDKPLESPSIG-ARGKY---------------LGHEDTVEDVQFCPS 205 (407)
Q Consensus 145 ~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~-~~~~~---------------~~~~~~v~~l~~~~~ 205 (407)
.. .+..+...+..+........ +++++.++.+++||+.... .+..+ .+|...|.+++|+|+
T Consensus 177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 43 33344444555555555553 7789999999999997765 33333 568899999999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-----CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCc
Q 046899 206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-----NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP 280 (407)
Q Consensus 206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~ 280 (407)
+ .+|++++.||.|++||+++++. ......+ ...+....... ....+++++.++.|++||+++ +++
T Consensus 257 ~-~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~d~~~------~~~ 326 (408)
T 4a11_B 257 G-LHLLTVGTDNRMRLWNSSNGEN--TLVNYGKVCNNSKKGLKFTVSCG-CSSEFVFVPYGSTIAVYTVYS------GEQ 326 (408)
T ss_dssp S-SEEEEEETTSCEEEEETTTCCB--CCCCCCCCCCCCSSCCCCEECCS-SSSCEEEEEETTEEEEEETTT------CCE
T ss_pred C-CEEEEecCCCeEEEEECCCCcc--ceeccccccccccccceeEEecC-CCceEEEEecCCEEEEEECcC------Ccc
Confidence 8 8999999999999999998773 2222111 11222222222 456677778899999999999 899
Q ss_pred eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCc
Q 046899 281 IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH 360 (407)
Q Consensus 281 ~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~ 360 (407)
+..+.+|...|++++|+|++++| ++++.||.|++||+++.+.+......... ..+++. .
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~-----------------~ 385 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPA-----------------F 385 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEEECC----------------------------------------
T ss_pred eeeeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEeCCCCCccCCCCceEec---cccccc-----------------c
Confidence 99999999999999999999865 79999999999999998776554433221 111111 1
Q ss_pred cceeeeEEEeeeEEEeecc
Q 046899 361 GRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 361 ~~~i~~~~~d~~i~iwd~~ 379 (407)
.....+...++.+++|+..
T Consensus 386 ~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 386 EDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -------------------
T ss_pred ceeecccCccCceeecCCc
Confidence 3334466678899999864
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.8e-30 Score=233.33 Aligned_cols=281 Identities=13% Similarity=0.112 Sum_probs=185.4
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC----------C---CCCCCCCcEEEEecccccc
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA----------D---SHPDLDQSVVLWSIQDHVS 146 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~----------~---~~~~~d~~i~~w~~~~~~~ 146 (407)
.+|.+.|++++|+| ++++||+|+.++ +++||+.+........... . .....++++++||+.++..
T Consensus 16 ~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 47999999999999 889999998775 8899987654332211100 0 0011178999999987644
Q ss_pred cccc-CCCCCcccccCCCCCccccccCCCCCCCCCCCCc-CceeeEeecccCEEEEEECCCCCcEEEE--EeCCCcEEEE
Q 046899 147 ALAA-EPGSAKSTASGGANSKNASKSGGNGDKPLESPSI-GARGKYLGHEDTVEDVQFCPSSAQEFCS--VGDDSCLILW 222 (407)
Q Consensus 147 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~s--~~~dg~i~iw 222 (407)
.... ....+..+... ........++.+++||+.+. +.+..+.. +...+++++ . +++. |+.||.|++|
T Consensus 94 ~~~~~~~~~v~~v~~~---~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iw 164 (355)
T 3vu4_A 94 VSRIKVDAPVKDLFLS---REFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-G--LLVYSNEFNLGQIHIT 164 (355)
T ss_dssp EEEEECSSCEEEEEEC---SSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-T--EEEEEESSCTTCEEEE
T ss_pred EEEEECCCceEEEEEc---CCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc-c--EEEEeCCCcCcEEEEE
Confidence 3222 12222222221 12233446788999999888 77766655 444556666 3 4444 6889999999
Q ss_pred EcCCCC--------------CCceeeecccCcceEEEEecCCCCCEEEEEeCCCc-EEEEeCCCCCCCCCCCceeeec-C
Q 046899 223 DARSGS--------------TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS-IHMFDRRKLTSDGVGSPIHKFE-G 286 (407)
Q Consensus 223 d~~~~~--------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~~~~~~~-~ 286 (407)
|++++. .+....+.+|...|++++|+| ++++|++|+.||+ |++||+++ ++++.++. +
T Consensus 165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~------~~~~~~~~~g 237 (355)
T 3vu4_A 165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTED------GVLVREFRRG 237 (355)
T ss_dssp ECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTT------CCEEEEEECT
T ss_pred ECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcC
Confidence 998754 111567789999999999999 9999999999998 99999998 89999998 5
Q ss_pred -CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc--ccccC-CCcccCCCCcCcchhccccc--eeeeeEeeCc
Q 046899 287 -HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ--DYGEL-KYPIIHPAYSSDMLDIETKL--LTSIGMHLIH 360 (407)
Q Consensus 287 -h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~--~~~~~-~~~v~~~~~s~d~~~~~~~~--~~~~~~~~~~ 360 (407)
|...|++++|+|++.+| ++++.|++|++||++...... .+... ........++.....+.... -.......+.
T Consensus 238 ~h~~~v~~~~~s~~~~~l-~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKL-AVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp TCCSCEEEEEECTTSCEE-EEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred CCCCcEEEEEECCCCCEE-EEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 99999999999999965 799999999999998653221 11110 00000000000000000000 0012344444
Q ss_pred cceeeeEEEeeeEEEeecc
Q 046899 361 GRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 361 ~~~i~~~~~d~~i~iwd~~ 379 (407)
+..|++|+.||.+++|++.
T Consensus 317 ~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEEE
Confidence 7899999999999999987
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.2e-29 Score=225.86 Aligned_cols=270 Identities=16% Similarity=0.223 Sum_probs=196.5
Q ss_pred cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEE
Q 046899 35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLI 110 (407)
Q Consensus 35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~v 110 (407)
+.-+..++.|.|+ +++++.|+.+++|- +.... ..........+|.+.|++++|+|. ++++|++|+.||.|++
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~---~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFK---LDKDT-SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEE---ECSSS-CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEE---CCCCC-CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 4457778899874 88999999999992 22211 111223344579999999999985 4889999999999999
Q ss_pred EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC--CCccccccCCCCCCCCCCCCcCcee
Q 046899 111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA--NSKNASKSGGNGDKPLESPSIGARG 188 (407)
Q Consensus 111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~~~~ 188 (407)
||+.++....... ..-.+..+. .+...+..+..... ...+++++.++.+++||+.+++.+.
T Consensus 86 wd~~~~~~~~~~~----------~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 86 WEEDPDQEECSGR----------RWNKLCTLN-------DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp EEECTTSCTTSSC----------SEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred EecCCCccccccc----------Ccceeeeec-------ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 9998764321100 000000010 11111111222222 3457888899999999998887665
Q ss_pred eEe-------------ecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC-
Q 046899 189 KYL-------------GHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV- 252 (407)
Q Consensus 189 ~~~-------------~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~- 252 (407)
.+. .|...+.+++|+|+ .+.+|++++.|+.+.+|+...+.......+.+|...|++++|+| ++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~ 227 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIG 227 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSS
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCC
Confidence 544 57889999999997 23799999999999888887776434667788999999999999 66
Q ss_pred ---CEEEEEeCCCcEEEEeCCCCCCC----------------------------------------CCCCceeeecCCCC
Q 046899 253 ---NLILTGSADNSIHMFDRRKLTSD----------------------------------------GVGSPIHKFEGHSA 289 (407)
Q Consensus 253 ---~~l~tg~~dg~i~vwd~~~~~~~----------------------------------------~~~~~~~~~~~h~~ 289 (407)
++|++|+.||.|++||++..... ...+++..+.+|..
T Consensus 228 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 228 RWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp CSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred CcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 89999999999999999862100 00156777889999
Q ss_pred CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
.|++++|+|++++| ++++.||.|++||+.+++....+
T Consensus 308 ~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 308 EVWSVSWNLTGTIL-SSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CEEEEEECSSSCCE-EEEETTSCEEEEEECTTSCEEEE
T ss_pred cEEEEEEcCCCCEE-EEecCCCcEEEEecCcCcchhhe
Confidence 99999999999965 79999999999999987655443
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=227.46 Aligned_cols=264 Identities=17% Similarity=0.209 Sum_probs=205.0
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN 164 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (407)
..++|+|++ ++ +||+|. |++|+|||+.++++...+..+... ..+..+......
T Consensus 27 y~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~------------------------~~V~~v~~~~~~ 79 (318)
T 4ggc_A 27 YLNLVDWSS-GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPG------------------------EYISSVAWIKEG 79 (318)
T ss_dssp TCBCEEECT-TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTT------------------------CCEEEEEECTTS
T ss_pred cceEEEECC-CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCC------------------------CeEEEEEECCCC
Confidence 368899998 44 787765 899999999988766655432211 111112222233
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEE
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHC 244 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 244 (407)
..+++++.|+.+++|+..+++.+..+.+|...+.++.+.+ .++++++.++.+++|+...... ....+.+|...+.+
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCG 155 (318)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEE
T ss_pred CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCce-eEEEEcCccCceEE
Confidence 5688899999999999999999999999999998877654 6899999999999999987764 46677899999999
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE--EEeeCCCeEEEEeCCCCC
Q 046899 245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF--GSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll--~s~~~d~~i~vwd~~~~~ 322 (407)
+.+++ +++++++++.||.|++||+++.... .........|...|.+++++|++..++ ++++.+++|++||.+...
T Consensus 156 ~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 156 LRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred EEEcC-CCCEEEEEecCcceeEEECCCCccc--ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence 99999 8999999999999999999873211 234456667889999999999988765 466788999999998865
Q ss_pred cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE--EEeeeEEEeeccccccCChHHHHHHHhhcccce
Q 046899 323 EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL--TMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHI 400 (407)
Q Consensus 323 ~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 400 (407)
.... ..+..++..+.|+++ +..++++ +.|++|+|||+. +++++..+.+|.+.|
T Consensus 233 ~~~~-~~~~~~v~~~~~~~~------------------~~~~~~~sg~~d~~i~iwd~~------~~~~~~~l~gH~~~V 287 (318)
T 4ggc_A 233 CLSA-VDAHSQVCSILWSPH------------------YKELISGHGFAQNQLVIWKYP------TMAKVAELKGHTSRV 287 (318)
T ss_dssp EEEE-EECSSCEEEEEEETT------------------TTEEEEEECTTTCCEEEEETT------TCCEEEEECCCSSCE
T ss_pred cccc-ccceeeeeeeeeccc------------------ccceEEEEEcCCCEEEEEECC------CCcEEEEEcCCCCCE
Confidence 5443 334555555566555 5555544 478999999998 788889999999999
Q ss_pred eEeeccC
Q 046899 401 FGCDKSC 407 (407)
Q Consensus 401 ~~~~~s~ 407 (407)
++++||+
T Consensus 288 ~~l~~sp 294 (318)
T 4ggc_A 288 LSLTMSP 294 (318)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 9999986
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=228.92 Aligned_cols=269 Identities=8% Similarity=-0.041 Sum_probs=190.8
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA 126 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 126 (407)
.+++++.|+.+++|- .... . ....+. .+.|+++.|+| . +++|+.|++|++|+...
T Consensus 50 ~l~sg~~Dg~v~iwd---~~~~--~----~~~~~~-~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~----------- 104 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQ---LKDS--K----TITTIT-TPNPRTGGEHP-A---IISRGPCNRLLLLYPGN----------- 104 (343)
T ss_dssp EEEEEEETTEEEEEE---ESSS--S----CEEEEE-EECCCTTCCCC-S---EEEECSTTEEEEEETTT-----------
T ss_pred EEEEECCCCcEEEEE---CCCC--c----EEEEEe-cCCceeeeeCC-c---eEEecCCCeEEEEEccC-----------
Confidence 488999999999992 2111 1 111111 46788888888 4 99999999999999753
Q ss_pred CCCCCCCCcEEEEecccccccc---ccCCCCCcccccCC--CCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEE
Q 046899 127 DSHPDLDQSVVLWSIQDHVSAL---AAEPGSAKSTASGG--ANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDV 200 (407)
Q Consensus 127 ~~~~~~d~~i~~w~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l 200 (407)
.+.+|++....... ..+...+..+.... ....+++++.|+.+++||+.+++.+..... |...|.++
T Consensus 105 --------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~ 176 (343)
T 3lrv_A 105 --------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG 176 (343)
T ss_dssp --------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEE
T ss_pred --------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEE
Confidence 44556655443111 11222333344444 456688899999999999999988766643 55689999
Q ss_pred EECCCCCcEEEEEeCCCcEEEEEcCCCCCCce-eeecc-cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 046899 201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAV-KVEKA-HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG 278 (407)
Q Consensus 201 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~ 278 (407)
+|+|++ .+|++|+.||.|++||+++++. . ..+.. |...|++++|+| ++.+|++++ |+.|++||++. .
T Consensus 177 ~~~pdg-~~lasg~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~------~ 245 (343)
T 3lrv_A 177 VLHKDS-LLLALYSPDGILDVYNLSSPDQ--ASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRK------D 245 (343)
T ss_dssp EECTTS-CEEEEECTTSCEEEEESSCTTS--CCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTS------S
T ss_pred EECCCC-CEEEEEcCCCEEEEEECCCCCC--CccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCC------C
Confidence 999999 8999999999999999999883 4 55666 999999999999 899999999 55999999998 5
Q ss_pred CceeeecC---CCCCEE--EEEEcCCCCCEEEEeeC-CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccccee
Q 046899 279 SPIHKFEG---HSAAVL--CVQWSPDKSSVFGSSAE-DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLT 352 (407)
Q Consensus 279 ~~~~~~~~---h~~~v~--~v~~~~~~~~ll~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 352 (407)
+.+..+.. |...+. +++|+|++++| ++++. |+.|++|++.+....-.. .++..+.|++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~---------- 310 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNM-IAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSD---------- 310 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEE-EEEETTTTEEEEEEECTTTCSEEE----EEEEECCC-------------
T ss_pred CcceeecccccccccccceEEEECCCCCEE-EEecCCCCcEEEEEEcccccceEe----cCceeEecCcc----------
Confidence 55544443 444444 69999999976 57777 999999999765432221 44555666551
Q ss_pred eeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 353 SIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 353 ~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+....+++++.|+.++++-..
T Consensus 311 -----~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 311 -----TADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ------CCCCEEEEEEETTEEEEEEEC
T ss_pred -----ccccceeEEEecCCceEEEEec
Confidence 1125678888888888887543
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.4e-29 Score=227.29 Aligned_cols=286 Identities=14% Similarity=0.121 Sum_probs=213.8
Q ss_pred cCCCeeEEEEeec------ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcE
Q 046899 35 LVWPSLSCRWGPQ------LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDV 108 (407)
Q Consensus 35 ~~~p~~s~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i 108 (407)
+.-+...+.|.|+ +++++.|+.+++|.. .. ..........+|.+.|++++|+| ++++|++|+.||.|
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~---~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV---QD---SGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTA 110 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEE---CT---TSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEc---CC---CCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcE
Confidence 4456777888774 789999999999922 11 11222245557999999999999 88999999999999
Q ss_pred EEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee
Q 046899 109 LIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG 188 (407)
Q Consensus 109 ~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 188 (407)
++||+.+++.... ..|... +. .+... .......+++++.++.+++||+.+++.+.
T Consensus 111 ~iwd~~~~~~~~~-~~~~~~-------v~---------~~~~~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 111 KMWDLSSNQAIQI-AQHDAP-------VK---------TIHWI--------KAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEEETTTTEEEEE-EECSSC-------EE---------EEEEE--------ECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred EEEEcCCCCceee-ccccCc-------eE---------EEEEE--------eCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence 9999987654332 222111 11 11110 02223457888999999999999999998
Q ss_pred eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCC----EEEEEeCCCcE
Q 046899 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVN----LILTGSADNSI 264 (407)
Q Consensus 189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~----~l~tg~~dg~i 264 (407)
.+..+. .+.++.+.+ ..+++++.++.+++||++............+...+.++.+.+ +.. .+++|+.||.|
T Consensus 166 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i 240 (368)
T 3mmy_A 166 VLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRV 240 (368)
T ss_dssp EEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEE
T ss_pred EEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcE
Confidence 887664 677777765 467888889999999998776332333333445566666655 333 39999999999
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCC------------CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY 332 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~------------~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 332 (407)
++||++.... ...+..+..|.. +|++++|+|++++| ++++.||.|++||+++++.+..+..|..
T Consensus 241 ~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (368)
T 3mmy_A 241 AIHYINPPNP---AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDARTKLKTSEQLDQ 316 (368)
T ss_dssp EEEESSCSCH---HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred EEEecCCCCc---cccceeeeeeecccccccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCCCcEEEEecCCCC
Confidence 9999998210 156777887776 79999999999966 6999999999999999999999999999
Q ss_pred cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 333 PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 333 ~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+|++++|+|| +..|++++.|+..+.|++.
T Consensus 317 ~v~~~~~s~~------------------g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 317 PISACCFNHN------------------GNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CEEEEEECTT------------------SSCEEEEECCCSTTCGGGC
T ss_pred CceEEEECCC------------------CCeEEEEeccccccccccc
Confidence 9999999999 8899999999865555543
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5.8e-28 Score=226.43 Aligned_cols=266 Identities=18% Similarity=0.296 Sum_probs=196.2
Q ss_pred cccCCCeeEEEEeec----ccccCccceEEEEeecccCcccC-----CcceeeEEEeeCCCceEEEEEeCCCCeEEEEee
Q 046899 33 HNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEAR-----SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHT 103 (407)
Q Consensus 33 ~~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~ 103 (407)
..+.-+...+.|.|. +++++.++.+++|-.. .... ..........+|.+.|.+|+|+|....+|++|+
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYT---KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGG---GSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECC---CcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344556677888773 7888999999999332 2100 112334555689999999999994444999999
Q ss_pred CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC-CCCccccccCCCCCCCCCCC
Q 046899 104 DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG-ANSKNASKSGGNGDKPLESP 182 (407)
Q Consensus 104 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~d~~ 182 (407)
.||.|++||+.+.......... ... +..+...+..+.... ....+++++.++.+++||+.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~----------~~~---------~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDA----------KNI---------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEEC----------SEE---------ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCCeEEEEeCCCCCCCCceecc----------cee---------ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999875322110000 000 001111111111111 12456778899999999998
Q ss_pred Cc---CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe
Q 046899 183 SI---GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS 259 (407)
Q Consensus 183 ~~---~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~ 259 (407)
.. +.+..+..|...|++++|+|++..+|++|+.||.|++||+++... ....+..|...|.+++|+|.+..+|++++
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence 76 577788899999999999999866899999999999999998543 46677789999999999994446899999
Q ss_pred CCCcEEEEeCCCCCCCC--------CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 260 ADNSIHMFDRRKLTSDG--------VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 260 ~dg~i~vwd~~~~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
.||.|++||++...... ..+.+..+.+|...|++++|+|++++++++++.||.|++|++...
T Consensus 342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999999998733110 025677888899999999999999977889999999999999863
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.6e-29 Score=234.09 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=167.0
Q ss_pred cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC-------CCCeEEEEeeCCCcEEEEeCcCCCCc
Q 046899 47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP-------QNSKIVATHTDSPDVLIWDVEAQPNR 119 (407)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------~~~~~l~tg~~dg~i~vwd~~~~~~~ 119 (407)
.+++++.|+++|||... ............+.+|.+.|++|+|+| .++++||||+.|++|+|||+.+..
T Consensus 103 ~las~~~d~~v~lw~~~---~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-- 177 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITK---NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-- 177 (393)
T ss_dssp EEEEEETTSCEEEEEEE---TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--
T ss_pred EEEEEeCCCcEEEEECC---CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--
Confidence 48899999999999322 111000011112347999999999987 368899999999999999987542
Q ss_pred ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEE
Q 046899 120 HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199 (407)
Q Consensus 120 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~ 199 (407)
++..+.+|...|.+
T Consensus 178 ------------------------------------------------------------------~~~~~~~~~~~v~~ 191 (393)
T 4gq1_A 178 ------------------------------------------------------------------PILAGYPLSSPGIS 191 (393)
T ss_dssp ------------------------------------------------------------------EEEEEEECSSCEEE
T ss_pred ------------------------------------------------------------------eeeeecCCCCCcEE
Confidence 23345578889999
Q ss_pred EEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce-----------------------eeecccCcceEEEEecCCCCCEEE
Q 046899 200 VQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV-----------------------KVEKAHNADIHCVDWNPHDVNLIL 256 (407)
Q Consensus 200 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------~~~~~~~~~v~~l~~~~~~~~~l~ 256 (407)
++|+|++.++|++|+.|++|++||+++++.... ....+|...+.++.|.+.++..++
T Consensus 192 v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~ 271 (393)
T 4gq1_A 192 VQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL 271 (393)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE
T ss_pred EEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE
Confidence 999999867899999999999999988752110 112357778899999744999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc------------------C-CCCCEEEEeeCCCeEEEEe
Q 046899 257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS------------------P-DKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 257 tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~------------------~-~~~~ll~s~~~d~~i~vwd 317 (407)
+++.|+.+++||++. .+....+..|...+..+.+. | .+..++++|+.||+|++||
T Consensus 272 s~s~d~~i~vwd~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd 345 (393)
T 4gq1_A 272 AMCKSGAWLRWNLFA------NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN 345 (393)
T ss_dssp EECTTSEEEEEEC-------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCEEEEECcc------CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence 999999999999987 55555555554444443333 2 3444567888999999999
Q ss_pred CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+.+++.......+..+|++++|||| +..|++++.+| +.+|++.
T Consensus 346 ~~~~~~~~~~~~~~~~V~svafspd------------------G~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 346 TYEKDSNSIPIQLGMPIVDFCWHQD------------------GSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTCTTCCEEEEECSSCEEEEEECTT------------------SSEEEEEESSE-EEEEEEG
T ss_pred CCCCcEEEEecCCCCcEEEEEEcCC------------------CCEEEEEeCCC-eEEEEEe
Confidence 9999888888889999999999999 88999988765 5566653
No 115
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-28 Score=222.86 Aligned_cols=253 Identities=16% Similarity=0.169 Sum_probs=187.9
Q ss_pred cCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEE
Q 046899 35 LVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLI 110 (407)
Q Consensus 35 ~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~v 110 (407)
+.-+..++.|.| .+++++.|+.+++|... ...........+|.+.|++++|+++ ++++|++|+.||.|++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVE------GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEE------TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecC------CCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 445677788877 48889999999999221 1112223345579999999999873 2889999999999999
Q ss_pred EeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC--CCccccccCCCCCCCCCCCCcC-
Q 046899 111 WDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA--NSKNASKSGGNGDKPLESPSIG- 185 (407)
Q Consensus 111 wd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~- 185 (407)
||+.++. ....+..|... +..+..... ...+++++.++.+++||+....
T Consensus 84 wd~~~~~~~~~~~~~~~~~~--------------------------v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSAS--------------------------VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEEETTEEEEEEEECCCSSC--------------------------EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EEcCCCceeEeeeecCCCcc--------------------------eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 9998764 33333333221 111111111 2457888999999999998774
Q ss_pred -ceeeEeecccCEEEEEECC-------------CCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecC
Q 046899 186 -ARGKYLGHEDTVEDVQFCP-------------SSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNP 249 (407)
Q Consensus 186 -~~~~~~~~~~~v~~l~~~~-------------~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~ 249 (407)
....+..|...|.+++|+| ++ .+|++++.||.|++||++++... ....+..|...|.+++|+|
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC
Confidence 3445678999999999999 46 89999999999999999877632 3456678999999999999
Q ss_pred CC---CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 250 HD---VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 250 ~~---~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
+ +++|++++.||.|++||++...... ...+.....|...|++++|+|++.+| ++++.||.|++||+.....
T Consensus 217 -~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 217 -TVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp -CCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEESSSSCCSSCEEEEEECSSSCCE-EEEESSSSEEEEEEEETTE
T ss_pred -CCCCCCeEEEEeCCCEEEEEeCCCCCccc-eeeeeccccCCCcEEEEEEcCCCCEE-EEecCCCcEEEEeCCCCCc
Confidence 7 8999999999999999998732000 01122223488899999999999976 6899999999999986443
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=7.3e-29 Score=230.51 Aligned_cols=227 Identities=18% Similarity=0.301 Sum_probs=182.7
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
.....++++|....++++|+.||.|+||++......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------------------------------- 70 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------------------------------- 70 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------------------------------------------
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC--------------------------------------------
Confidence 445568888855556667899999999998643111
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCC-----Cceeeecc
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKA 237 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~ 237 (407)
...+..+.+|...|++++|+| ++ .+|++|+.||.|++||+.++.. .....+.+
T Consensus 71 --------------------~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 71 --------------------DKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp --------------------CTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred --------------------CCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence 012334567999999999999 66 8999999999999999998742 24667789
Q ss_pred cCcceEEEEecCCCC-CEEEEEeCCCcEEEEeCCCCCCCCCCCceeee--cCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 238 HNADIHCVDWNPHDV-NLILTGSADNSIHMFDRRKLTSDGVGSPIHKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
|...|.+++|+| ++ ++|++|+.||.|++||+++ ++.+..+ ..|...|.+++|+|++.+| ++++.|+.|+
T Consensus 130 h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~ 201 (402)
T 2aq5_A 130 HTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGT------GAAVLTLGPDVHPDTIYSVDWSRDGALI-CTSCRDKRVR 201 (402)
T ss_dssp CSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTT------TEEEEEECTTTCCSCEEEEEECTTSSCE-EEEETTSEEE
T ss_pred CCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCC------CCccEEEecCCCCCceEEEEECCCCCEE-EEEecCCcEE
Confidence 999999999999 65 7999999999999999998 8889899 7899999999999999966 6999999999
Q ss_pred EEeCCCCCccccc-ccCCCc-ccCCCCcCcchhccccceeeeeEeeCccceeeeE---EEeeeEEEeeccccccCChHHH
Q 046899 315 IWDHEKIGEKQDY-GELKYP-IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL---TMVKVLEIWRMIDLIYRPEEEV 389 (407)
Q Consensus 315 vwd~~~~~~~~~~-~~~~~~-v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~---~~d~~i~iwd~~~~~~~~~~~~ 389 (407)
+||+++++.+..+ ..|... +..+.|+++ +..+++| +.|+.|++||+.. ++.
T Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~l~~g~~~~~d~~i~iwd~~~------~~~ 257 (402)
T 2aq5_A 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSE------------------GKILTTGFSRMSERQVALWDTKH------LEE 257 (402)
T ss_dssp EEETTTTEEEEEEECSSCSSSCCEEEECST------------------TEEEEEEECTTCCEEEEEEETTB------CSS
T ss_pred EEeCCCCceeeeeccCCCCCcceEEEEcCC------------------CcEEEEeccCCCCceEEEEcCcc------ccC
Confidence 9999998888877 566655 777888777 7788888 6899999999973 221
Q ss_pred -HHHHh-hcccceeEeeccC
Q 046899 390 -LAELD-KFKSHIFGCDKSC 407 (407)
Q Consensus 390 -~~~~~-~h~~~v~~~~~s~ 407 (407)
+.... .|...|.+++|++
T Consensus 258 ~~~~~~~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 258 PLSLQELDTSSGVLLPFFDP 277 (402)
T ss_dssp CSEEEECCCCSSCEEEEEET
T ss_pred CceEEeccCCCceeEEEEcC
Confidence 11222 4677888988875
No 117
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=1.2e-28 Score=223.50 Aligned_cols=233 Identities=10% Similarity=0.046 Sum_probs=183.9
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
+|.+.|++++|+| ++++|++|+.||.|++||+.+....
T Consensus 9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~----------------------------------------- 46 (342)
T 1yfq_A 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN----------------------------------------- 46 (342)
T ss_dssp CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE-----------------------------------------
T ss_pred CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc-----------------------------------------
Confidence 6999999999999 8889999999999999998754311
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCc-EEEEEeCCCcEEEEEc-CCCCCCceeeecc-
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQ-EFCSVGDDSCLILWDA-RSGSTPAVKVEKA- 237 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~- 237 (407)
.....+.+|...|.+++|+|++ . +|++|+.||.|++||+ .++. ...+..
T Consensus 47 ------------------------~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~ 98 (342)
T 1yfq_A 47 ------------------------VDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPS---FQALTNN 98 (342)
T ss_dssp ------------------------EEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSS---EEECBSC
T ss_pred ------------------------ccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCc---eEecccc
Confidence 0123344788999999999998 8 8999999999999999 7765 466677
Q ss_pred -cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC---CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 238 -HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG---VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 238 -~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~---~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
|...|.+++|+| +++|++++.||.|++||++...... ..+++..+. |...|.+++|+|++ + ++++.|+.|
T Consensus 99 ~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l-~~~~~d~~i 172 (342)
T 1yfq_A 99 EANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--L-IVGMNNSQV 172 (342)
T ss_dssp CCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--E-EEEESTTEE
T ss_pred CCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--E-EEEeCCCeE
Confidence 999999999999 7899999999999999987510000 013344555 88999999999987 4 699999999
Q ss_pred EEEeCCC-CCcc--cccccCCCcccCCCCcC-cchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH
Q 046899 314 NIWDHEK-IGEK--QDYGELKYPIIHPAYSS-DMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV 389 (407)
Q Consensus 314 ~vwd~~~-~~~~--~~~~~~~~~v~~~~~s~-d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~ 389 (407)
++||+++ .... .....+..++.+++|+| + +..+++++.|+.|+||++.........++
T Consensus 173 ~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------------------~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE------------------QEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EEEESSCCTTCCCEEEECSCSSCEEEEEECSGG------------------GCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred EEEECCccccccceeeecCCCCceeEEEECCCC------------------CCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 9999998 5432 23445677888888888 7 78999999999999999973100000266
Q ss_pred HHHHhhccc---------ceeEeeccC
Q 046899 390 LAELDKFKS---------HIFGCDKSC 407 (407)
Q Consensus 390 ~~~~~~h~~---------~v~~~~~s~ 407 (407)
+..+.+|.. .|.+++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred ceeeecccccccccccceeEEEEEEcC
Confidence 667777765 999999985
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=225.29 Aligned_cols=224 Identities=15% Similarity=0.109 Sum_probs=173.0
Q ss_pred eCCCceEEEEEeCCCCeEE-EEeeCCCcEEEEeCc--CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 81 IHPGEVNRIRELPQNSKIV-ATHTDSPDVLIWDVE--AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
+|.+.|++++|+| ++++| ++|+.||.|++||+. ++.....+..+... . .+..
T Consensus 100 ~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------------~----------~v~~ 154 (450)
T 2vdu_B 100 PIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS--------------K----------RPNA 154 (450)
T ss_dssp CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS--------------S----------CEEE
T ss_pred ccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC--------------C----------CceE
Confidence 5677899999999 67764 999999999999998 66555444321110 0 1111
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCcee----eEeecccCEEEEEECCC---CCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGARG----KYLGHEDTVEDVQFCPS---SAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~v~~l~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
+........+++++.++.+.+|++..++... .+.+|...|.+++|+|+ + .+|++|+.|+.|++||++++.
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~-- 231 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCF-- 231 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTT--
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCc--
Confidence 1112223457778888999999887776554 77889999999999999 7 899999999999999999887
Q ss_pred ceee-ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-----------------------
Q 046899 231 AVKV-EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG----------------------- 286 (407)
Q Consensus 231 ~~~~-~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------------------- 286 (407)
.... ..+|...|.+++|+ ++++|++|+.|+.|++||+++ ++++..+..
T Consensus 232 ~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT------GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT------CCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred eeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC------CcEeeeecchhhhhhhhhhccccccccccccc
Confidence 4544 56899999999999 789999999999999999998 777777753
Q ss_pred --CCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeC--CCC---CcccccccCCCcccCCCCcCc
Q 046899 287 --HSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDH--EKI---GEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 287 --h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~--~~~---~~~~~~~~~~~~v~~~~~s~d 342 (407)
....|.+++|+|++++++ +++ .|+.|++||+ ... +.+..+..+ .++.+++|+|+
T Consensus 304 ~~~~~~v~~i~~~~~~~~l~-~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 304 DIIEFAVSKIIKSKNLPFVA-FFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp -CBCCCEEEEEECSSSSEEE-EEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred ccceEEEEEEEEeCCCCEEE-EEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 245799999999999775 555 8999999999 444 445556555 67777777665
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=5.8e-27 Score=213.91 Aligned_cols=264 Identities=13% Similarity=0.145 Sum_probs=185.0
Q ss_pred cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
..-+..++.|.|+ +++++.++ +++|... ........ +...+..+++.+....++++|+.|++|++|
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVH---------PVAHIMSQ-EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEET---------TEEEEEEE-ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecC---------Ccceeeee-ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 3456778889884 66666665 7899211 12222222 333588888888444455778889999999
Q ss_pred eCcCCCCcccccCcCCCCCC-----------CCCcEEEEecccc-ccccccC-CCCCcccccCCCCCcccc--ccCCCCC
Q 046899 112 DVEAQPNRHAVLGAADSHPD-----------LDQSVVLWSIQDH-VSALAAE-PGSAKSTASGGANSKNAS--KSGGNGD 176 (407)
Q Consensus 112 d~~~~~~~~~~~~~~~~~~~-----------~d~~i~~w~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~i 176 (407)
|..+++....+..+. .+.. .++.+++||+.+. ....... +........ ..++. ++.+|.+
T Consensus 87 d~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~----~~la~~sg~~~g~v 161 (355)
T 3vu4_A 87 DDVKKQDVSRIKVDA-PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN----GLLVYSNEFNLGQI 161 (355)
T ss_dssp ETTTTEEEEEEECSS-CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET----TEEEEEESSCTTCE
T ss_pred ECCCCcEEEEEECCC-ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc----cEEEEeCCCcCcEE
Confidence 999887665543221 1111 1889999999876 2211111 111111111 23333 6899999
Q ss_pred CCCCCCCcC----------------ceeeEeecccCEEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCCCceeeec-c-
Q 046899 177 KPLESPSIG----------------ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC-LILWDARSGSTPAVKVEK-A- 237 (407)
Q Consensus 177 ~i~d~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~-~- 237 (407)
++||+.+++ .+..+.+|...|++++|+|++ .+|++|+.|++ |++||+++++ ....+. +
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~ 238 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGV--LVREFRRGL 238 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCC--EEEEEECTT
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC
Confidence 999998765 267888999999999999999 89999999998 9999999988 666766 4
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec---------------------CCCCCEEEEEE
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE---------------------GHSAAVLCVQW 296 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~---------------------~h~~~v~~v~~ 296 (407)
|...|++++|+| ++++|++|+.|+.|++||++.... .....+. .+......++|
T Consensus 239 h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 239 DRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQD----NKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp CCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSC----CCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCC----cccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 999999999999 999999999999999999986431 1111111 11223467999
Q ss_pred cCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 297 SPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 297 ~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
++++.+| ++++.||.+++|++...+.
T Consensus 314 ~~d~~~l-~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 314 ISESSLV-VVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp SSSSEEE-EEETTTTEEEEEEEEEETT
T ss_pred eCCCCEE-EEEeCCCeEEEEEEEcCCC
Confidence 9999966 6889999999999876543
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-27 Score=235.44 Aligned_cols=255 Identities=16% Similarity=0.161 Sum_probs=190.8
Q ss_pred ccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEE
Q 046899 34 NLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVL 109 (407)
Q Consensus 34 ~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~ 109 (407)
.+.-+..++.|.| .+++++.|+.+++|... ...........+|.+.|++++|+|+ ++++|++|+.||.|+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~------~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE------GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEE------TTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecC------CCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 3445677778876 48899999999999221 1112233445579999999999883 289999999999999
Q ss_pred EEeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC--CCccccccCCCCCCCCCCCCcC
Q 046899 110 IWDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA--NSKNASKSGGNGDKPLESPSIG 185 (407)
Q Consensus 110 vwd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~ 185 (407)
+||+.++. ....+.+|... +..+..... ...+++++.++.+++||+....
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~--------------------------V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSAS--------------------------VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSC--------------------------EEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred EEECCCCcccccccccCCCCC--------------------------eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 99998764 23333333221 111111111 3457888999999999998763
Q ss_pred --ceeeEeecccCEEEEEECCC-------------CCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEec
Q 046899 186 --ARGKYLGHEDTVEDVQFCPS-------------SAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWN 248 (407)
Q Consensus 186 --~~~~~~~~~~~v~~l~~~~~-------------~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~ 248 (407)
....+.+|...|.+++|+|. + .+|++|+.||.|++||++++.. .....+.+|...|++++|+
T Consensus 135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp CCCCEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred CcceeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 44556789999999999994 5 7899999999999999998753 2345677899999999999
Q ss_pred CCC---CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 249 PHD---VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 249 ~~~---~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
| + +.+|++|+.||.|++||++...... ...+.....|...|++++|+|++.++ ++|+.||.|++||+......
T Consensus 214 p-~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l-~s~s~Dg~I~vwd~~~~~~~ 289 (753)
T 3jro_A 214 P-TVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLWKENLEGKW 289 (753)
T ss_dssp C-CCSSSEEEEEEESSSCEEEEEESSSSSCC-BCCBSSSSCCSSCCCCEEECTTTCCE-EEECSSSCEECCBCCSSSCC
T ss_pred c-CCCCCCEEEEEecCCEEEEecCCCCCCcc-eeEEeccCCCCCceEEEEEcCCCCEE-EEEcCCCEEEEEecCCCCCc
Confidence 9 6 8999999999999999998732100 01334445688999999999999976 69999999999999965443
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=3.8e-26 Score=211.21 Aligned_cols=265 Identities=12% Similarity=0.074 Sum_probs=196.5
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDVEAQPNRHAVLGAA 126 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 126 (407)
+++++.++.+++|- ....+....+.+...+.+++|+| +++ ++++++.|++|++||+.+++....+..+.
T Consensus 5 ~vs~~~d~~v~v~d---------~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 5 YIANSESDNISVID---------VTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEETTTTEEEEEE---------TTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EEEcCCCCEEEEEE---------CCCCeEEEEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 46778889999992 11223444455566799999999 665 45788899999999998887655544322
Q ss_pred C-----CCCCC---------CCcEEEEecccccccccc-CCCCCcccccCCCCCcc-ccccCCCCCCCCCCCCcCceeeE
Q 046899 127 D-----SHPDL---------DQSVVLWSIQDHVSALAA-EPGSAKSTASGGANSKN-ASKSGGNGDKPLESPSIGARGKY 190 (407)
Q Consensus 127 ~-----~~~~~---------d~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~d~~~~~~~~~~ 190 (407)
. ..++. ++.|.+||+.++...... .......+........+ ++++.++.+.+||..+++.+..+
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 1 11111 689999999876432221 11222222333333334 67788999999999999888887
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe---CCCcEEEE
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMF 267 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vw 267 (407)
..+ ..+.+++|+|++..++++++.++.|++||+++++ ....+ .+...+.+++|+| +++++++++ .++.|++|
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~-~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--VIDTV-KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE-ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEE
T ss_pred ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe--EEEEE-ecCCCccceEECC-CCCEEEEEecCcCCCcEEEE
Confidence 655 4579999999995455788889999999999876 44443 4567889999999 888888887 68999999
Q ss_pred eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcc
Q 046899 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI 334 (407)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 334 (407)
|+++ ++++..+..|. .+.+++|+|++++++++++.|+.|++||+.+++....+..+..+.
T Consensus 230 d~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~ 289 (391)
T 1l0q_A 230 DTGT------NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY 289 (391)
T ss_dssp ETTT------TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred ECCC------CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence 9998 78888888765 579999999999887888999999999999988887777665553
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=3.1e-27 Score=221.56 Aligned_cols=279 Identities=9% Similarity=0.007 Sum_probs=203.6
Q ss_pred eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccccc-----CcCCCCCCCCCcEEEEeccccccccc
Q 046899 75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL-----GAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
.....+.+...+.+++|+| ++.++++++.|+.|++||+.+++...... +|.. . ++.
T Consensus 114 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-------~--v~~--------- 174 (433)
T 3bws_A 114 RFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG-------F--VET--------- 174 (433)
T ss_dssp EEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC-------E--EEE---------
T ss_pred eEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC-------c--eeE---------
Confidence 4445555666788999999 99999999999999999999876554221 1111 1 111
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
+........+++++.++.+++||..+++.+..+..|...+.+++|+|++..++++++.|+.|++||+++++
T Consensus 175 --------~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~- 245 (433)
T 3bws_A 175 --------ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL- 245 (433)
T ss_dssp --------EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-
T ss_pred --------EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-
Confidence 11111123467778889999999999999999988999999999999995455677689999999999876
Q ss_pred CceeeecccCcceEEEEecCCCCCEEEEEe--------CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC
Q 046899 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGS--------ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 301 (407)
....+.. ...+.+++|+| +++++++++ .||.|++||+++ ++.+..+ .|...+.+++|+|+++
T Consensus 246 -~~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~~~~~~-~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 246 -EIRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDK------EKLIDTI-GPPGNKRHIVSGNTEN 315 (433)
T ss_dssp -EEEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTT------TEEEEEE-EEEECEEEEEECSSTT
T ss_pred -EEEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCC------CcEEeec-cCCCCcceEEECCCCC
Confidence 4555443 45689999999 888888887 588999999998 6666655 3566899999999998
Q ss_pred CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCc-----cceeeeEEEeeeEEEe
Q 046899 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH-----GRLLVCLTMVKVLEIW 376 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~-----~~~i~~~~~d~~i~iw 376 (407)
+++++++.|+.|++||+.+++....+. +...+.+++|+|+. . .+++.... ...+++|+.||.|++|
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg------~--~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG------K--YLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS------S--EEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC------C--EEEEEecCCCccccccccccccceEEEEE
Confidence 888888999999999999877666654 55667788888871 0 00111100 1123344447899999
Q ss_pred eccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 377 RMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 377 d~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
|+. +++.+..+.++ ..+.+++|++
T Consensus 387 d~~------~~~~~~~~~~~-~~~~~~~~s~ 410 (433)
T 3bws_A 387 DTT------TDTVKEFWEAG-NQPTGLDVSP 410 (433)
T ss_dssp ETT------TTEEEEEEECS-SSEEEEEECT
T ss_pred ECC------CCcEEEEecCC-CCCceEEEcC
Confidence 998 56655555553 4678888875
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=8.8e-26 Score=211.63 Aligned_cols=277 Identities=11% Similarity=0.053 Sum_probs=200.1
Q ss_pred eEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899 40 LSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ 116 (407)
Q Consensus 40 ~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~ 116 (407)
..+.|.| .++++..++.+++|- ................+|.+.|++++|+| +++++++++.|+.|++||+.++
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d---~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLD---INSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEE---TTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEE---CCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc
Confidence 3566665 255677777899992 11111000000001236889999999987 8999999999999999999887
Q ss_pred CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc-ccccCCCCCCCCCCCCcCceeeEeeccc
Q 046899 117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN-ASKSGGNGDKPLESPSIGARGKYLGHED 195 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 195 (407)
+....+..+...+ .-..|+ +.+ ..+ +++..++.+++||..+++.+..+..+ .
T Consensus 202 ~~~~~~~~~~~~~-----~~~~~~------------------~~~---~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~ 254 (433)
T 3bws_A 202 AYKATVDLTGKWS-----KILLYD------------------PIR---DLVYCSNWISEDISVIDRKTKLEIRKTDKI-G 254 (433)
T ss_dssp CEEEEEECSSSSE-----EEEEEE------------------TTT---TEEEEEETTTTEEEEEETTTTEEEEECCCC-S
T ss_pred eEEEEEcCCCCCe-----eEEEEc------------------CCC---CEEEEEecCCCcEEEEECCCCcEEEEecCC-C
Confidence 6655544332210 001111 111 123 44557889999999988887777654 4
Q ss_pred CEEEEEECCCCCcEEEEEe--------CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCC-EEEEEeCCCcEEE
Q 046899 196 TVEDVQFCPSSAQEFCSVG--------DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVN-LILTGSADNSIHM 266 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~tg~~dg~i~v 266 (407)
.+.+++|+|++ ..+++++ .|+.|++||+++++ .... ..|...+.+++|+| +++ ++++++.|+.|++
T Consensus 255 ~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~-~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 255 LPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEK--LIDT-IGPPGNKRHIVSGN-TENKIYVSDMCCSKIEV 329 (433)
T ss_dssp EEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEE-EEEEECEEEEEECS-STTEEEEEETTTTEEEE
T ss_pred CceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCc--EEee-ccCCCCcceEEECC-CCCEEEEEecCCCEEEE
Confidence 59999999999 6777776 58999999999876 3333 35667889999999 665 5677789999999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC---------------CCeEEEEeCCCCCcccccccCC
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE---------------DGILNIWDHEKIGEKQDYGELK 331 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~---------------d~~i~vwd~~~~~~~~~~~~~~ 331 (407)
||+++ ++.+..+. +...+.+++|+|++++++ +++. ||.|++||+.+++.+..+.. .
T Consensus 330 ~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~ 400 (433)
T 3bws_A 330 YDLKE------KKVQKSIP-VFDKPNTIALSPDGKYLY-VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-G 400 (433)
T ss_dssp EETTT------TEEEEEEE-CSSSEEEEEECTTSSEEE-EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-S
T ss_pred EECCC------CcEEEEec-CCCCCCeEEEcCCCCEEE-EEecCCCccccccccccccceEEEEEECCCCcEEEEecC-C
Confidence 99998 77777776 677899999999999775 4444 57999999999887777665 4
Q ss_pred CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE-eeeEEEeecc
Q 046899 332 YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMI 379 (407)
Q Consensus 332 ~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~ 379 (407)
..+.+++|+|| +..|++++. |++|++|++.
T Consensus 401 ~~~~~~~~s~d------------------g~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 401 NQPTGLDVSPD------------------NRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSEEEEEECTT------------------SCEEEEEETTTTEEEEEEET
T ss_pred CCCceEEEcCC------------------CCEEEEEECCCCeEEEEEec
Confidence 45678888887 778877764 9999999986
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-25 Score=208.60 Aligned_cols=190 Identities=11% Similarity=0.095 Sum_probs=145.7
Q ss_pred CCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc-----ceEEEEec
Q 046899 175 GDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA-----DIHCVDWN 248 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~l~~~ 248 (407)
.++.|+...++....+. .|...|.+++|+|+| .+||+++.||.|++||... +...+. |.. .+.+++|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafS 138 (588)
T 2j04_A 65 FENKLDFELAQQNGLLNSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWN 138 (588)
T ss_dssp CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEEC
T ss_pred CcceEEEEeCCCceEeecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEc
Confidence 44555554444333332 468899999999999 8999999999999999543 344555 554 59999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC-------ceeee----cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 249 PHDVNLILTGSADNSIHMFDRRKLTSDGVGS-------PIHKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 249 ~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-------~~~~~----~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
| ++++||+|+.||.|++||++. +. .+.++ .+|...|.+++|+|+| + ++++.|++|++||
T Consensus 139 P-DG~~LAsgs~DGtVkIWd~~~------~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd 208 (588)
T 2j04_A 139 P-IESSIVVGNEDGELQFFSIRK------NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMT 208 (588)
T ss_dssp S-SSSCEEEEETTSEEEEEECCC------CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEEC
T ss_pred C-CCCEEEEEcCCCEEEEEECCC------CccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEE
Confidence 9 999999999999999999987 43 25776 6688899999999999 5 5888899999999
Q ss_pred CCCCCcc---ccc-ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899 318 HEKIGEK---QDY-GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL 393 (407)
Q Consensus 318 ~~~~~~~---~~~-~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 393 (407)
+...+.. +++ .+|...|.+++|+ +..|++++ +++|++||+. .++.....
T Consensus 209 ~~~~~~~~~~~tL~~~h~~~V~svaFs--------------------g~~LASa~-~~tIkLWd~~------~~~~~~~~ 261 (588)
T 2j04_A 209 VSASSHQPVSRMIQNASRRKITDLKIV--------------------DYKVVLTC-PGYVHKIDLK------NYSISSLK 261 (588)
T ss_dssp CCSSSSCCCEEEEECCCSSCCCCEEEE--------------------TTEEEEEC-SSEEEEEETT------TTEEEEEE
T ss_pred CCCCccccceeeecccccCcEEEEEEE--------------------CCEEEEEe-CCeEEEEECC------CCeEEEEE
Confidence 9886632 345 3677778777773 35677776 7999999997 44442222
Q ss_pred hhcccceeEeec--cC
Q 046899 394 DKFKSHIFGCDK--SC 407 (407)
Q Consensus 394 ~~h~~~v~~~~~--s~ 407 (407)
.||.+.|.+++| |+
T Consensus 262 ~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 262 TGSLENFHIIPLNHEK 277 (588)
T ss_dssp CSCCSCCCEEEETTCS
T ss_pred cCCCceEEEEEeeeCC
Confidence 289999999999 64
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=1.7e-25 Score=206.75 Aligned_cols=248 Identities=10% Similarity=0.098 Sum_probs=187.2
Q ss_pred CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCC
Q 046899 96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNG 175 (407)
Q Consensus 96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (407)
+.++++++.|+.|++||+.+++....+..+.. ...+... +.+. ..+++++.++.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-----------------~~~~~~s-------~dg~--~l~~~~~~d~~ 55 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-----------------PMGAVIS-------PDGT--KVYVANAHSND 55 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-----------------EEEEEEC-------TTSS--EEEEEEGGGTE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-----------------cceEEEC-------CCCC--EEEEECCCCCe
Confidence 45789999999999999988765554433211 1111111 1221 11355668899
Q ss_pred CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899 176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI 255 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 255 (407)
+++||..+++.+..+..+. .+.+++|+|++..++++++.++.|++||+.+++ ....+. +...+.+++|+| +++.+
T Consensus 56 i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l 130 (391)
T 1l0q_A 56 VSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTVK-TGKSPLGLALSP-DGKKL 130 (391)
T ss_dssp EEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-CSSSEEEEEECT-TSSEE
T ss_pred EEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe--EEEEEe-CCCCcceEEECC-CCCEE
Confidence 9999999998888887555 899999999994455666678999999999887 444443 455789999999 77766
Q ss_pred -EEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcc
Q 046899 256 -LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI 334 (407)
Q Consensus 256 -~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 334 (407)
++++.++.|++||+++ ++.+..+..+ ..+.+++|+|++++++++++.|+.|++||+++++....+.. ...+
T Consensus 131 ~~~~~~~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~ 202 (391)
T 1l0q_A 131 YVTNNGDKTVSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAP 202 (391)
T ss_dssp EEEETTTTEEEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEE
T ss_pred EEEeCCCCEEEEEECCC------CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCc
Confidence 7888899999999998 7888888765 45799999999998877888999999999998776655543 4456
Q ss_pred cCCCCcCcchhccccceeeeeEeeCccceeeeEE---EeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 335 IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT---MVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 335 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.+++|+|+ +..+++++ .++.|++||+. +++++..+..|. .+.+++|++
T Consensus 203 ~~~~~~~~------------------g~~l~~~~~~~~~~~v~~~d~~------~~~~~~~~~~~~-~~~~~~~s~ 253 (391)
T 1l0q_A 203 SGIAVNPE------------------GTKAYVTNVDKYFNTVSMIDTG------TNKITARIPVGP-DPAGIAVTP 253 (391)
T ss_dssp EEEEECTT------------------SSEEEEEEECSSCCEEEEEETT------TTEEEEEEECCS-SEEEEEECT
T ss_pred cceEECCC------------------CCEEEEEecCcCCCcEEEEECC------CCeEEEEEecCC-CccEEEEcc
Confidence 67777777 77788777 58899999998 566666666665 467888874
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.1e-23 Score=196.07 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=173.4
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCC---cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSP---DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~ 152 (407)
...+.+|.+.|.+++|+| +++.|++++.++ .|++||+.+++.
T Consensus 171 ~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~---------------------------------- 215 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV---------------------------------- 215 (415)
T ss_dssp CEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE----------------------------------
T ss_pred CEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcE----------------------------------
Confidence 345557999999999999 888999998875 888888875431
Q ss_pred CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEE-EEeCCCc--EEEEEcCCCCC
Q 046899 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFC-SVGDDSC--LILWDARSGST 229 (407)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~ 229 (407)
..+..|...+.+++|+|+| +.|+ +++.++. |.+||+++++
T Consensus 216 -----------------------------------~~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~- 258 (415)
T 2hqs_A 216 -----------------------------------RQVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQ- 258 (415)
T ss_dssp -----------------------------------EEEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC-
T ss_pred -----------------------------------EEeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCC-
Confidence 1233466789999999999 5555 7776665 9999998876
Q ss_pred CceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s 306 (407)
...+..|...+.+++|+| +++.|++++. ++ .|.+||+.. ++ ...+..|...+.+++|+|+|++|+.+
T Consensus 259 --~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~------~~-~~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 259 --IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNING------GA-PQRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp --EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTS------SC-CEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred --EEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCC------CC-EEEEecCCCcccCeEECCCCCEEEEE
Confidence 356677888999999999 8898888776 45 677778876 44 44566677889999999999977544
Q ss_pred eeC--CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecccc
Q 046899 307 SAE--DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMIDL 381 (407)
Q Consensus 307 ~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~~~ 381 (407)
+.. +..|.+||+.+++. ..+..+. .+..++|+|| +..|+.++.++ .|++||+.
T Consensus 329 ~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spd------------------g~~l~~~s~~~~~~~l~~~d~~-- 386 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPN------------------GTMVIYSSSQGMGSVLNLVSTD-- 386 (415)
T ss_dssp EECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTT------------------SSEEEEEEEETTEEEEEEEETT--
T ss_pred ECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCC------------------CCEEEEEEcCCCccEEEEEECC--
Confidence 433 35899999998665 3444443 7778889888 88888888887 89999985
Q ss_pred ccCChHHHHHHHhhcccceeEeeccC
Q 046899 382 IYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+..+..+.+|.+.|.+++|||
T Consensus 387 -----g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 387 -----GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp -----SCCEEECCCSSSEEEEEEECC
T ss_pred -----CCcEEEeeCCCCCCcCCcccc
Confidence 555677899999999999996
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.4e-24 Score=190.80 Aligned_cols=262 Identities=12% Similarity=0.069 Sum_probs=170.9
Q ss_pred hhhhhhhhccCceEEEeeeecc-cCCCeeEEEEeecc------cccCccc-eEEEEeecccCcccCCcceeeEEEeeCCC
Q 046899 13 DDRYTQWKSLVPVLYDWLANHN-LVWPSLSCRWGPQL------EQATYKN-RQRLYLSEQFNEEARSPFVKKFKTIIHPG 84 (407)
Q Consensus 13 ~~~~~~w~~~~~~~y~~l~~~~-~~~p~~s~~~~~~~------~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~h~~ 84 (407)
+.-+.+|++....-...++.-. .+-|.+.+.+.|+. +-|.-.. .++.+. +. .++.........-+|..
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla---~s-pd~~~~~~~l~s~g~~~ 137 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF---CS-SDDESEKQVLLKSGNIK 137 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC---C-------CCEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE---EC-CCccccccEEEeCCCeE
Confidence 5667889988874333333333 34477888777731 1111110 122221 11 11111233333346776
Q ss_pred ceEEEEEeCCCCeEEEEee--CCCcEEEEeCcC-CCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 85 EVNRIRELPQNSKIVATHT--DSPDVLIWDVEA-QPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~--~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
.|..+ + +++++.+++ .|+.|++|++.. ++.+..+..|... .++.. +.+..
T Consensus 138 ~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~-----v~~l~------------------fs~~~ 190 (356)
T 2w18_A 138 AVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE-----ETILT------------------FAEVQ 190 (356)
T ss_dssp EEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS-----SCEEE------------------EEEEE
T ss_pred EEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc-----eeeEE------------------eeccC
Confidence 67665 4 788888854 699999999954 5444444443332 11111 11111
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecc---cCEEEEEECCCCCcEE------------EEEeCCCcEEEEEcCC
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHE---DTVEDVQFCPSSAQEF------------CSVGDDSCLILWDARS 226 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~v~~l~~~~~~~~~l------------~s~~~dg~i~iwd~~~ 226 (407)
.....+++++.|++|++||+.+++.+.++.+|. ..+.+++|+|++ .++ ++|+.|++|++||..+
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTT
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 223457889999999999999999999998654 467888999998 555 6788999999999998
Q ss_pred CCCCceeee-----cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE-EEEEcCCC
Q 046899 227 GSTPAVKVE-----KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL-CVQWSPDK 300 (407)
Q Consensus 227 ~~~~~~~~~-----~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~ 300 (407)
+. ....+ .+|...+.+.++ ++.++++|+.|++|+|||+++ ++++.++.+|...+. +++|+|+|
T Consensus 270 gk--~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~t------Gk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 270 TL--SVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLL------GQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp TE--EEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTT------CSEEEEECCC--CCCCEEEECSSS
T ss_pred CE--EEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCC------CcEEEEecCCCCCeEEEEEECCCC
Confidence 87 33332 366655544444 467899999999999999999 999999999987655 68999999
Q ss_pred CCEEEEeeCCCeEEEEeC
Q 046899 301 SSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~ 318 (407)
++| ++|+.|++|+|||+
T Consensus 339 ~~L-aSGS~D~TIklWd~ 355 (356)
T 2w18_A 339 SHL-LAGQKDGNIFVYHY 355 (356)
T ss_dssp SEE-EEECTTSCEEEEEE
T ss_pred CEE-EEEECCCcEEEecC
Confidence 965 79999999999995
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=8.1e-23 Score=196.20 Aligned_cols=300 Identities=10% Similarity=0.051 Sum_probs=206.8
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC--cCCCCcccccCc
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV--EAQPNRHAVLGA 125 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~--~~~~~~~~~~~~ 125 (407)
++++..++.+.+|- ....+....+.....+..++|+| ++++|++++.|++|++||+ .+.+....+...
T Consensus 152 ~vs~~~d~~V~v~D---------~~t~~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 152 SVTLRDAGQIALVD---------GDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp EEEEGGGTEEEEEE---------TTTCCEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred EEEEcCCCeEEEEE---------CCCceEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 56677788888881 11222334443222389999999 8999999999999999999 555443333211
Q ss_pred CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc-CCCCCCCCCCCCcCceeeEeec-----------
Q 046899 126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS-GGNGDKPLESPSIGARGKYLGH----------- 193 (407)
Q Consensus 126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~----------- 193 (407)
.....+.+++. .+.....+.++. .++.+.+||..+++++..+..+
T Consensus 222 -----------------~~p~~va~sp~------~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 222 -----------------IEARSVESSKF------KGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp -----------------SEEEEEEECCS------TTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred -----------------CCcceEEeCCC------cCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence 11111112210 000112233333 4788999999999988887642
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKL 272 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~ 272 (407)
...+..+.++|+++.++++...++.|.+||+.+.+......+ .+...+..+.|+| ++++|+++ ..++.|.+||..+
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~t- 355 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKD- 355 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTT-
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCC-
Confidence 237899999998878888888999999999988763222233 4566788999999 88876654 5689999999998
Q ss_pred CCCCCCCceeeecC----CCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCC-------CCcccccccCCCcccCCCCc
Q 046899 273 TSDGVGSPIHKFEG----HSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEK-------IGEKQDYGELKYPIIHPAYS 340 (407)
Q Consensus 273 ~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~s 340 (407)
++++..+.. |.+....+ ++|++..+++|+. .|++|.+||+.+ .+.++++..+...+..+.|+
T Consensus 356 -----g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~ 429 (543)
T 1nir_A 356 -----RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 429 (543)
T ss_dssp -----TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred -----CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence 888888774 55444343 5788555778876 689999999998 78888999888888889999
Q ss_pred CcchhccccceeeeeEeeCccceeeeEE-------EeeeEEEeeccccccCChHHHHHH---HhhcccceeEeeccC
Q 046899 341 SDMLDIETKLLTSIGMHLIHGRLLVCLT-------MVKVLEIWRMIDLIYRPEEEVLAE---LDKFKSHIFGCDKSC 407 (407)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~---~~~h~~~v~~~~~s~ 407 (407)
|| +..|++.+ .+.+|.|||+.+.....+.-++.. +..|...|..++|++
T Consensus 430 pd------------------g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 430 PK------------------SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp TT------------------CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred CC------------------CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 98 77777776 367999999984221101111222 245667788888875
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=9.2e-23 Score=189.93 Aligned_cols=270 Identities=11% Similarity=0.016 Sum_probs=187.2
Q ss_pred CCCceEEEEEeCCCCeEEEEee----CCC----cEEEEeC--cCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHT----DSP----DVLIWDV--EAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~----~dg----~i~vwd~--~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
+...++...|.+.+.+++++|+ .|| +|++||+ .+++.+. .+.++.... ..+.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 124 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWL----------------RYAG 124 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGH----------------HHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHH----------------HHHH
Confidence 3457888888887778888887 567 8999999 7776442 232222110 0000
Q ss_pred cCCCCCcc----cccCCCCCccccccCC------CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC--
Q 046899 150 AEPGSAKS----TASGGANSKNASKSGG------NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS-- 217 (407)
Q Consensus 150 ~~~~~~~~----~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg-- 217 (407)
.......+ -..+.+...++.++.+ +.+++||... .....+.+|...+.+++|+|+| +.|++++.++
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~ 202 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGR 202 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSS
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCC
Confidence 00000000 0001112233333332 6889999874 5567788899999999999999 7888888875
Q ss_pred -cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE-EEeCCCc--EEEEeCCCCCCCCCCCceeeecCCCCCEEE
Q 046899 218 -CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSADNS--IHMFDRRKLTSDGVGSPIHKFEGHSAAVLC 293 (407)
Q Consensus 218 -~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-tg~~dg~--i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~ 293 (407)
.|++||+++++ . ..+..|...+.+++|+| +++.|+ +++.++. |++||+++ ++ ...+..|...+.+
T Consensus 203 ~~i~~~d~~tg~--~-~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~------~~-~~~l~~~~~~~~~ 271 (415)
T 2hqs_A 203 SALVIQTLANGA--V-RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLAS------GQ-IRQVTDGRSNNTE 271 (415)
T ss_dssp CEEEEEETTTCC--E-EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTT------CC-EEECCCCSSCEEE
T ss_pred cEEEEEECCCCc--E-EEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCC------CC-EEeCcCCCCcccc
Confidence 99999999887 3 35567888999999999 888777 6666654 99999987 44 4677788899999
Q ss_pred EEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe-
Q 046899 294 VQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV- 370 (407)
Q Consensus 294 v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d- 370 (407)
++|+|+|++|++++..++ .|.+||+.+++ ...+..+...+..++|||| +..|+.++.+
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spd------------------G~~l~~~~~~~ 332 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSD------------------GKFMVMVSSNG 332 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTT------------------SSEEEEEEECS
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCC------------------CCEEEEEECcC
Confidence 999999997754443355 68888988765 3444455667778888888 7888877775
Q ss_pred --eeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 371 --KVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 371 --~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
..|++||+. ++++ ..+..|. .+.+++||+
T Consensus 333 g~~~i~~~d~~------~~~~-~~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 333 GQQHIAKQDLA------TGGV-QVLSSTF-LDETPSLAP 363 (415)
T ss_dssp SCEEEEEEETT------TCCE-EECCCSS-SCEEEEECT
T ss_pred CceEEEEEECC------CCCE-EEecCCC-CcCCeEEcC
Confidence 699999997 4433 2355554 788888885
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.3e-20 Score=166.48 Aligned_cols=246 Identities=11% Similarity=0.018 Sum_probs=166.4
Q ss_pred ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC-CCCcccccCcC-C
Q 046899 50 QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA-QPNRHAVLGAA-D 127 (407)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~-~~~~~~~~~~~-~ 127 (407)
+++.++.+++|- ...........|.+.|.+++|+| ++++|++++ ++.|.+||+.+ ++.......+. .
T Consensus 17 ~~~~~~~i~~~d---------~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (297)
T 2ojh_A 17 GGSMRSSIEIFN---------IRTRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI 85 (297)
T ss_dssp -CCCCEEEEEEE---------TTTTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred CCCcceeEEEEe---------CCCCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc
Confidence 345677788881 11223445567999999999999 888898887 78999999988 65544332221 1
Q ss_pred CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc--CCCCCCCCCC--CCcCceeeEeecccCEEEEEEC
Q 046899 128 SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS--GGNGDKPLES--PSIGARGKYLGHEDTVEDVQFC 203 (407)
Q Consensus 128 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~ 203 (407)
.+. ...+.+.+ ..++++. .++...+|.. ..++ ...+. +...+.+++|+
T Consensus 86 ~~~-----------------------~~~~spdg---~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~s 137 (297)
T 2ojh_A 86 CNN-----------------------DHGISPDG---ALYAISDKVEFGKSAIYLLPSTGGT-PRLMT-KNLPSYWHGWS 137 (297)
T ss_dssp BCS-----------------------CCEECTTS---SEEEEEECTTTSSCEEEEEETTCCC-CEECC-SSSSEEEEEEC
T ss_pred ccc-----------------------ceEECCCC---CEEEEEEeCCCCcceEEEEECCCCc-eEEee-cCCCccceEEC
Confidence 100 01111111 1233333 2344555544 3333 33333 33458999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCcee
Q 046899 204 PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
|++..++++++.++.+++|+++.... ....+..+...+.+++|+| +++.|+.++ .++.+++|+++.. ...+.
T Consensus 138 pdg~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~-----~~~~~ 210 (297)
T 2ojh_A 138 PDGKSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD-----GSSVE 210 (297)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT-----SSCEE
T ss_pred CCCCEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC-----CCCcE
Confidence 99944455888899999999754322 2455667888999999999 888777665 5899999998732 46677
Q ss_pred eecCCCCCEEEEEEcCCCCCEEEEeeCC-----------CeEEEEeCCCCCcc--cccccCCCcccCCCCcCc
Q 046899 283 KFEGHSAAVLCVQWSPDKSSVFGSSAED-----------GILNIWDHEKIGEK--QDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----------~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d 342 (407)
.+..|...+.+++|+|++++|+ +++.+ +.|.+||+.+.+.. ..+.++...+..++|+||
T Consensus 211 ~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 282 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPSGDKVV-FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD 282 (297)
T ss_dssp ECCCCSEEEEEEEECTTSSEEE-EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred EEecCCcccCCeEECCCCCEEE-EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence 8888888999999999999775 55544 57999999886653 334467888999999998
No 131
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.3e-21 Score=182.84 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=105.1
Q ss_pred ecccCEEEEEECCCCCcEEE----EEeCCCcEEEEEcCCC-----CC--C--ceeeecccCcceEEEEecCCCCCEEEEE
Q 046899 192 GHEDTVEDVQFCPSSAQEFC----SVGDDSCLILWDARSG-----ST--P--AVKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~----s~~~dg~i~iwd~~~~-----~~--~--~~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
.+...|.+++|+|++ ++|+ +|+.|+.|++||+++. +. + ....+.+|...|.+++|+|.++++|+++
T Consensus 90 ~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 366789999999999 6777 7888999999999764 11 0 1345567999999999999448999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 259 SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 259 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
+.||.|++||+++ +..+....+|...|++++|+|+|.+| ++|+.||+|++||++ ++....+
T Consensus 169 s~Dg~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~l-asgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 169 LADGSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQL-AVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp ETTSCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSCE-EEEETTSCEEEECTT-CCEEEEE
T ss_pred ECCCeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCEE-EEEcCCCcEEEEccC-Ccccccc
Confidence 9999999999998 66666677788999999999999976 699999999999998 4444433
No 132
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.6e-20 Score=175.42 Aligned_cols=177 Identities=11% Similarity=0.104 Sum_probs=135.1
Q ss_pred EEeeCCCceEEEEEeCCCCeEEE----EeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVA----THTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG 153 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~----tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~ 153 (407)
..+.|.+.|++++|+| ++++|| +|+.|++|+|||+.+...... ..
T Consensus 87 ~~~~~~~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~-----~~------------------------- 135 (434)
T 2oit_A 87 LLVPMKFPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAK-----QQ------------------------- 135 (434)
T ss_dssp EEECCSSCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTC-----SS-------------------------
T ss_pred ccccCCCcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCc-----CC-------------------------
Confidence 4456888999999999 788888 899999999999875310000 00
Q ss_pred CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899 154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK 233 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 233 (407)
......+..+.+|...|.+++|+|+++.+|++++.||+|++||++++. ...
T Consensus 136 ---------------------------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--~~~ 186 (434)
T 2oit_A 136 ---------------------------KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--KVC 186 (434)
T ss_dssp ---------------------------CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--EEE
T ss_pred ---------------------------cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--cee
Confidence 000011234457899999999999854899999999999999999875 455
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-------CCCEEEEEEcCCCCCEEEE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-------SAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~ll~s 306 (407)
....|...|.+++|+| ++++|++|+.||.|++||++. +....+..| ...|.+++|++++.++++.
T Consensus 187 ~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 187 ATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp EEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred eccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-------cccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 5567889999999999 899999999999999999983 334444433 3389999999998876655
Q ss_pred eeCCCe------EEEEeCCCCC
Q 046899 307 SAEDGI------LNIWDHEKIG 322 (407)
Q Consensus 307 ~~~d~~------i~vwd~~~~~ 322 (407)
+..||. +++|++++.+
T Consensus 259 ~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 259 AAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EETTCCSSSCCEEEEEECCCTT
T ss_pred ccCCCccCCCCceEEEEeccCC
Confidence 656643 8999998753
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=7.7e-20 Score=165.34 Aligned_cols=273 Identities=8% Similarity=0.147 Sum_probs=172.4
Q ss_pred ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCC-CcEEEEeCc--CCCCcccccCcC
Q 046899 50 QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDS-PDVLIWDVE--AQPNRHAVLGAA 126 (407)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d-g~i~vwd~~--~~~~~~~~~~~~ 126 (407)
++..++.+++|. ++. ...........|...+.+++|+| ++++|++++.+ +.|++|++. ++.....
T Consensus 10 ~~~~~~~v~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~----- 77 (343)
T 1ri6_A 10 ASPESQQIHVWN---LNH---EGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFA----- 77 (343)
T ss_dssp EEGGGTEEEEEE---ECT---TSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEE-----
T ss_pred eCCCCCeEEEEE---ECC---CCcEEEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeec-----
Confidence 445677888982 211 12234455567899999999999 77777777776 999999997 3321110
Q ss_pred CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCC---CCcCceeeEeecccCEEEEEEC
Q 046899 127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLES---PSIGARGKYLGHEDTVEDVQFC 203 (407)
Q Consensus 127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~---~~~~~~~~~~~~~~~v~~l~~~ 203 (407)
........ +..+.+.+.+.. .+++...++.+.+||+ ...+.+..+. ....+.+++|+
T Consensus 78 ----------~~~~~~~~-------~~~~~~s~dg~~--l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s 137 (343)
T 1ri6_A 78 ----------AESALPGS-------LTHISTDHQGQF--VFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANIS 137 (343)
T ss_dssp ----------EEEECSSC-------CSEEEECTTSSE--EEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEEC
T ss_pred ----------cccccCCC-------CcEEEEcCCCCE--EEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEEC
Confidence 00000000 111111222211 1233344777889988 3334444443 33468899999
Q ss_pred CCCCcEEEEEe-CCCcEEEEEcCC-CCCCcee--eec-ccCcceEEEEecCCCCCEEE-EEeCCCcEEEEeCCCCCCCCC
Q 046899 204 PSSAQEFCSVG-DDSCLILWDARS-GSTPAVK--VEK-AHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLTSDGV 277 (407)
Q Consensus 204 ~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~--~~~-~~~~~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~~ 277 (407)
|++ +.+++++ .++.|.+||+.+ ++..... ... .....+.+++|+| ++++++ ++..++.|.+||+....
T Consensus 138 ~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~---- 211 (343)
T 1ri6_A 138 PDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH---- 211 (343)
T ss_dssp TTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT----
T ss_pred CCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----
Confidence 999 5555555 899999999987 5411111 222 2345788999999 787665 44578999999996421
Q ss_pred CCc--eeeec---CC---CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC----CCcccccccCCCcccCCCCcCcchh
Q 046899 278 GSP--IHKFE---GH---SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK----IGEKQDYGELKYPIIHPAYSSDMLD 345 (407)
Q Consensus 278 ~~~--~~~~~---~h---~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~d~~~ 345 (407)
++. ...+. .. ...+.+++|+|++++|++++..++.|.+||+.. .+.+..+..+.. +..++|+||
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~d--- 287 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHS--- 287 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTT---
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCC---
Confidence 222 22222 11 346778999999998887877899999999983 233334444333 778888887
Q ss_pred ccccceeeeeEeeCccceeeeEE-EeeeEEEeecc
Q 046899 346 IETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRMI 379 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~~ 379 (407)
+..|++++ .++.|+||++.
T Consensus 288 ---------------g~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 288 ---------------GKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ---------------SSEEEEECTTTCEEEEEEEE
T ss_pred ---------------CCEEEEecCCCCeEEEEEEc
Confidence 77677666 57899999664
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=2.8e-20 Score=169.09 Aligned_cols=264 Identities=8% Similarity=0.023 Sum_probs=186.4
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeC-------CCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTD-------SPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG 153 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~ 153 (407)
.....+..++|+| +++.|++++. ++.|.+||..+++....+..... +.
T Consensus 38 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~------------------------~~ 92 (353)
T 3vgz_A 38 AVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK------------------------PF 92 (353)
T ss_dssp EEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC------------------------CC
T ss_pred hhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC------------------------cc
Confidence 4566789999999 6666666653 56899999987765444322111 11
Q ss_pred CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC---------EEEEEECCCCCcEEEEE-eCCCcEEEEE
Q 046899 154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT---------VEDVQFCPSSAQEFCSV-GDDSCLILWD 223 (407)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---------v~~l~~~~~~~~~l~s~-~~dg~i~iwd 223 (407)
...+.+.+. ..+++...++.+.+||..+++.+..+..+... +.+++|+|++..+++++ +.++.|.+||
T Consensus 93 ~~~~s~dg~--~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 93 GATINNTTQ--TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp SEEEETTTT--EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred eEEECCCCC--EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 112222222 12344455678899999988887777654322 78999999994444444 3588999999
Q ss_pred cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC----CCCCEEEEEEcCC
Q 046899 224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG----HSAAVLCVQWSPD 299 (407)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----h~~~v~~v~~~~~ 299 (407)
+.+++ ....+..+...+.+++|+| +++.+++++.++.|.+||+.+ ++.+..+.. +...+.+++|+|+
T Consensus 171 ~~~~~--~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 171 GGNIK--LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTAD------NKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp TTTTE--EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTT------TEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred CCCCc--eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCC------CeEEEEEEcCCCCCCcccceEEECCC
Confidence 99877 4555554666688999999 899999999999999999998 777777654 5567889999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE-EeeeEEEeec
Q 046899 300 KSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRM 378 (407)
Q Consensus 300 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~ 378 (407)
+++++++...++.|.+||+.+++....+..... ..++|+|| +..++... .++.|.+||.
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~d------------------g~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPA------------------RNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETT------------------TTEEEEEETTTTEEEEEET
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCC------------------CCEEEEEECCCCeEEEEEC
Confidence 998887777779999999998887766654332 45667776 66555444 6789999999
Q ss_pred cccccCChHHHHHHHhhcccceeEeeccC
Q 046899 379 IDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 379 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
. +++.+..+..+ ..+.+++|++
T Consensus 302 ~------~~~~~~~~~~~-~~~~~~~~s~ 323 (353)
T 3vgz_A 302 K------SYKVVKTFDTP-THPNSLALSA 323 (353)
T ss_dssp T------TTEEEEEEECC-SEEEEEEECT
T ss_pred C------CCeEEEEEecC-CCCCeEEEcC
Confidence 7 55555444433 3567888874
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=1e-20 Score=181.61 Aligned_cols=262 Identities=7% Similarity=-0.034 Sum_probs=186.1
Q ss_pred EeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccc
Q 046899 91 ELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASK 170 (407)
Q Consensus 91 ~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (407)
++| ++.++++++.|++|.+||..+++.+..+..+.. +..+.+.+.| ..+.++
T Consensus 145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~------------------------~~~v~~spdg---~~l~v~ 196 (543)
T 1nir_A 145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA------------------------VHISRMSASG---RYLLVI 196 (543)
T ss_dssp CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT------------------------EEEEEECTTS---CEEEEE
T ss_pred cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc------------------------cceEEECCCC---CEEEEE
Confidence 677 788999999999999999998876655432110 0011122222 346666
Q ss_pred cCCCCCCCCCC--CCcCceeeEeecccCEEEEEECC----CCCcEEEEEe-CCCcEEEEEcCCCCCCceeeecc------
Q 046899 171 SGGNGDKPLES--PSIGARGKYLGHEDTVEDVQFCP----SSAQEFCSVG-DDSCLILWDARSGSTPAVKVEKA------ 237 (407)
Q Consensus 171 ~~~~~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~~----~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~------ 237 (407)
+.++.+.+||+ .+++.+..+. +...+..++|+| ++ +++++++ .+++|.+||..+.+ ....+..
T Consensus 197 ~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~g~~~~ 272 (543)
T 1nir_A 197 GRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVD 272 (543)
T ss_dssp ETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSS
T ss_pred CCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccc--cceeecccCcccC
Confidence 67799999999 7888888776 455689999999 99 6777776 58999999999887 4554433
Q ss_pred ----cCc-ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee--eecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 238 ----HNA-DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH--KFEGHSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 238 ----~~~-~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
|.. .+.++.++|.+..++++...++.|.+||... .+.+. .+. +...+.+++|+|+|+++++++..+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~------~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~ 345 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD------IDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNS 345 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT------SSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGG
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC------CCcceeEEec-cCcCccCceECCCCCEEEEEecCC
Confidence 223 6889999995566777888899999999987 34333 444 566788999999999988787789
Q ss_pred CeEEEEeCCCCCcccccccCCCcc--cCCCCcCcchhccccceeeeeEeeCccceeeeEE-EeeeEEEeeccccc-cCCh
Q 046899 311 GILNIWDHEKIGEKQDYGELKYPI--IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRMIDLI-YRPE 386 (407)
Q Consensus 311 ~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~~~~~-~~~~ 386 (407)
++|.+||+.+++....+.....|- ....| .....+..++++. .|++|.|||+.... ....
T Consensus 346 ~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~----------------~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 346 NKVAVIDSKDRRLSALVDVGKTPHPGRGANF----------------VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp TEEEEEETTTTEEEEEEECSSSBCCTTCEEE----------------EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred CeEEEEECCCCeEEEeeccCCCCCCCCCccc----------------CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence 999999999988777666432221 11111 1111244455554 47899999997211 0111
Q ss_pred HHHHHHHhhcccceeEeeccC
Q 046899 387 EEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 387 ~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+++++.+.+|.+.+..|+|+|
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp TSEEEEEECSCSCCCCEECCT
T ss_pred CeEEEEEEcCCCCceEEEcCC
Confidence 788889999988889998875
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=5.2e-19 Score=159.36 Aligned_cols=270 Identities=10% Similarity=0.036 Sum_probs=173.9
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcCCCC-cccccCc
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDVEAQPN-RHAVLGA 125 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~-~~~~~~~ 125 (407)
+++...++.+++|- .+.. ...... ..+...+ .++|+| +++ +++++..++.|.+||..+++. ...+..+
T Consensus 13 ~v~~~~~~~v~~~d-----~~~~--~~~~~~-~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 13 IVVEQHLRRISFFS-----TDTL--EILNQI-TLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp EEEEGGGTEEEEEE-----TTTC--CEEEEE-ECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred EEEecCCCeEEEEe-----Cccc--ceeeeE-EccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45566677888881 1111 111111 2345556 999999 666 555555589999999987765 3332222
Q ss_pred CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCC-C--CCCCCCCCCcCceeeEeecccCEEEEEE
Q 046899 126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGG-N--GDKPLESPSIGARGKYLGHEDTVEDVQF 202 (407)
Q Consensus 126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 202 (407)
... .. ...+.+.+. .+++...+ + .+.+||..+++.+..+.. .....+++|
T Consensus 83 ~~~-----------------~~------~~~~s~dg~---~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~ 135 (331)
T 3u4y_A 83 QSS-----------------MA------DVDITPDDQ---FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAI 135 (331)
T ss_dssp SSC-----------------CC------CEEECTTSS---EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEE
T ss_pred CCC-----------------cc------ceEECCCCC---EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEE
Confidence 111 11 011112222 22322223 2 799999998888777654 445689999
Q ss_pred CCCCCcEEEEEeCCCc-EEEEEcCCCCCCce--eeecccCcceEEEEecCCCCCEE-EEEeCCCcEEEEeCCCCCCCCCC
Q 046899 203 CPSSAQEFCSVGDDSC-LILWDARSGSTPAV--KVEKAHNADIHCVDWNPHDVNLI-LTGSADNSIHMFDRRKLTSDGVG 278 (407)
Q Consensus 203 ~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~ 278 (407)
+|++..+++++..++. |.+|++........ ............++|+| +++++ +++..++.|++||+++ +
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~------~ 208 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQN------P 208 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSS------T
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCC------C
Confidence 9999556666677788 99999986442100 12223445678999999 88755 5555689999999987 6
Q ss_pred Cc---eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc--cccccc----CCCcc---cCCCCcCcchhc
Q 046899 279 SP---IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE--KQDYGE----LKYPI---IHPAYSSDMLDI 346 (407)
Q Consensus 279 ~~---~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--~~~~~~----~~~~v---~~~~~s~d~~~~ 346 (407)
+. +..+..+ ..+..++|+|+|++++++...++.|.+||+.+++. +..+.. ...+. ..++|+||
T Consensus 209 ~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd---- 283 (331)
T 3u4y_A 209 ENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKT---- 283 (331)
T ss_dssp TSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTT----
T ss_pred cccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCC----
Confidence 76 7777644 56789999999998877777789999999998665 222221 12222 23577777
Q ss_pred cccceeeeeEeeCccceeeeEEE-eeeEEEeeccc
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMID 380 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~~ 380 (407)
+..++..+. ++.|+|||+..
T Consensus 284 --------------g~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 284 --------------ETKLFISANISRELKVFTISG 304 (331)
T ss_dssp --------------SSEEEEEETTTTEEEEEETTS
T ss_pred --------------CCEEEEecCCCCcEEEEEecC
Confidence 777765554 55999999973
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=3.1e-20 Score=185.43 Aligned_cols=303 Identities=13% Similarity=0.047 Sum_probs=186.4
Q ss_pred CeeEEEEeec--ccccCccceEEEEeecccCcccCCcceeeEEEee-CCC---ceEEEEEeCCCCeEEEEeeCC------
Q 046899 38 PSLSCRWGPQ--LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTII-HPG---EVNRIRELPQNSKIVATHTDS------ 105 (407)
Q Consensus 38 p~~s~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~---~v~~l~~~~~~~~~l~tg~~d------ 105 (407)
...++.|.|+ ++..+.++.+++| +.... ....... |.. .|.+++|+| ++++|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~-----d~~~g----~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLW-----NVETN----TSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQH 87 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEB-----CGGGC----CCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSS
T ss_pred cccccEEcCCCcEEEEeCCCCEEEE-----ECCCC----cEEEEeccccccccccceEEECC-CCCEEEEEecCccceee
Confidence 3455678774 3333667788888 22221 2223333 443 499999999 88999998765
Q ss_pred ---CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC
Q 046899 106 ---PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP 182 (407)
Q Consensus 106 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 182 (407)
+.|.+||+.+++.. .+...... .. ......+.++|. .+++++. +.+.+||..
T Consensus 88 ~~~~~i~~~d~~~~~~~-~l~~~~~~-------------~~-------~~~~~~~SPdG~---~la~~~~-~~i~~~~~~ 142 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGDPQ-SLDPPEVS-------------NA-------KLQYAGWGPKGQ---QLIFIFE-NNIYYCAHV 142 (723)
T ss_dssp CCCSEEEEEESSSCCCE-ECCCTTCC-------------SC-------CCSBCCBCSSTT---CEEEEET-TEEEEESSS
T ss_pred cceeeEEEEECCCCceE-eccCCccc-------------cc-------cccccEECCCCC---EEEEEEC-CeEEEEECC
Confidence 66778888776541 11111000 00 001122222332 2444433 678888888
Q ss_pred CcCceeeEeecccCE------------------EEEEECCCCCcEEEEEeCCC---------------------------
Q 046899 183 SIGARGKYLGHEDTV------------------EDVQFCPSSAQEFCSVGDDS--------------------------- 217 (407)
Q Consensus 183 ~~~~~~~~~~~~~~v------------------~~l~~~~~~~~~l~s~~~dg--------------------------- 217 (407)
+++.......+...+ .+++|+|+| +.|++++.|+
T Consensus 143 ~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred CCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 877766555444333 789999999 7777776543
Q ss_pred -------cEEEEEcCCCCCCceeeecc------cCcceEEEEecCCCCCEEEEEeC----CCcEEEEeCCCCCCCCCCCc
Q 046899 218 -------CLILWDARSGSTPAVKVEKA------HNADIHCVDWNPHDVNLILTGSA----DNSIHMFDRRKLTSDGVGSP 280 (407)
Q Consensus 218 -------~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~l~tg~~----dg~i~vwd~~~~~~~~~~~~ 280 (407)
.|++||+.+++ ....+.. +...+..++|+| +++++++... +..|++||+.+ ++.
T Consensus 222 G~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~------g~~ 292 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPT--HDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT------GVC 292 (723)
T ss_dssp TSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT------CCE
T ss_pred CCCCCeeEEEEEECCCCc--eeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC------Ccc
Confidence 79999998876 2333333 366789999999 8888877643 35799999988 666
Q ss_pred eeeecC-CCCCE----EEEEEcCCCCCEEEE-eeCCC------eEEEEeCCCCCc---ccccccCCCcccC-CCCcCcch
Q 046899 281 IHKFEG-HSAAV----LCVQWSPDKSSVFGS-SAEDG------ILNIWDHEKIGE---KQDYGELKYPIIH-PAYSSDML 344 (407)
Q Consensus 281 ~~~~~~-h~~~v----~~v~~~~~~~~ll~s-~~~d~------~i~vwd~~~~~~---~~~~~~~~~~v~~-~~~s~d~~ 344 (407)
...+.. +...+ ..++|+|+|++|+.. +..++ .|.+||+...+. ...+......+.. ++||||
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd-- 370 (723)
T 1xfd_A 293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK-- 370 (723)
T ss_dssp EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT--
T ss_pred eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC--
Confidence 555543 33444 378999999987654 55677 577777323333 4444433333333 467777
Q ss_pred hccccceeeeeEeeCccceeeeEEEe---eeEEEeeccccccCChHHHHHHHhh---cccceeEeeccC
Q 046899 345 DIETKLLTSIGMHLIHGRLLVCLTMV---KVLEIWRMIDLIYRPEEEVLAELDK---FKSHIFGCDKSC 407 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~---h~~~v~~~~~s~ 407 (407)
+..|+..+.+ +.++||++.... +.....+.+ |...+..++||+
T Consensus 371 ----------------g~~l~~~~~~~~~~~~~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~sp 419 (723)
T 1xfd_A 371 ----------------GNKIYFLSTEDLPRRRQLYSANTVG----NFNRQCLSCDLVENCTYFSASFSH 419 (723)
T ss_dssp ----------------TTEEEEEESSSCTTCCEEEEECSST----TCCCBCSSTTSSSSCCCCEEEECT
T ss_pred ----------------CCEEEEEEcCCCCcceEEEEEeCCC----CCCcceecccccCCCCeEEEEECC
Confidence 7777765555 789999986211 111222333 677788888885
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=8e-21 Score=190.22 Aligned_cols=286 Identities=11% Similarity=0.066 Sum_probs=193.5
Q ss_pred CCceEEEEEeCCCCeEEEEeeC-CC-----cEEEEeCcCCCCcccccCcCC-----------------------------
Q 046899 83 PGEVNRIRELPQNSKIVATHTD-SP-----DVLIWDVEAQPNRHAVLGAAD----------------------------- 127 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~-dg-----~i~vwd~~~~~~~~~~~~~~~----------------------------- 127 (407)
...|.+++|+| +|++|++++. |+ .|.+||+.+++....+..+..
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 55799999999 8999999988 88 899999998875444332211
Q ss_pred -CCCCC-------CCcEEEEecccc---cc-ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc
Q 046899 128 -SHPDL-------DQSVVLWSIQDH---VS-ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED 195 (407)
Q Consensus 128 -~~~~~-------d~~i~~w~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 195 (407)
..++. ++.+.+||+.++ .. .+..+...............+++++ ++.+.+||..+++.......+..
T Consensus 115 ~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred EECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 11222 578899999876 32 2333323333333333333455554 46899999988776555444433
Q ss_pred C----------------EEEEEECCCCCcEEEEEeCCC---------------------------------cEEEEEcCC
Q 046899 196 T----------------VEDVQFCPSSAQEFCSVGDDS---------------------------------CLILWDARS 226 (407)
Q Consensus 196 ~----------------v~~l~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~ 226 (407)
. +..++|+|+| +.|++++.|+ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred ceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 4789999999 6777776665 789999988
Q ss_pred -CCCCceeeec--ccCcceEEEEecCCCCCEEEEEeC-----CCcEEEEeCCCCCCCCCCCceeeecCCCC----CEEEE
Q 046899 227 -GSTPAVKVEK--AHNADIHCVDWNPHDVNLILTGSA-----DNSIHMFDRRKLTSDGVGSPIHKFEGHSA----AVLCV 294 (407)
Q Consensus 227 -~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~h~~----~v~~v 294 (407)
++ ...... .|...+..++| | +++.|++++. +..|++||+.+ ++....+..+.. .+.++
T Consensus 273 ~~~--~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 273 QAQ--TQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLAS------NQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp TCC--CEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTT------CCEEEEEEEECSSCCCCCSCC
T ss_pred CCc--eEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCC------CceEEEEEcCCCCcCCcCCce
Confidence 76 232222 47788999999 9 8998887654 56899999998 666666655443 45689
Q ss_pred EEcCCCCCEEEEeeCCCeEEEEeCCC-CCcccccccCCCcccCC-CCcCcchhccccceeeeeEeeCccceee-eEEEee
Q 046899 295 QWSPDKSSVFGSSAEDGILNIWDHEK-IGEKQDYGELKYPIIHP-AYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVK 371 (407)
Q Consensus 295 ~~~~~~~~ll~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~-~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~ 371 (407)
+|+|+|+ ++++++.|+.++||.+.. ++ ...+..+...+..+ .|||| +..|+ +++.++
T Consensus 343 ~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~d------------------g~~l~~~~~~~~ 402 (741)
T 2ecf_A 343 RFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEK------------------AGLAYFRAGIES 402 (741)
T ss_dssp EECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETT------------------TTEEEEEECSSC
T ss_pred EECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCC------------------CCEEEEEEeCCC
Confidence 9999999 667888999888887763 33 66666666666665 47777 66665 444455
Q ss_pred --eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 372 --VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 372 --~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.++||++.. .+..+..+.+ ...+.+++||+
T Consensus 403 ~~~~~l~~~~~-----~g~~~~~l~~-~~~~~~~~~sp 434 (741)
T 2ecf_A 403 ARESQIYAVPL-----QGGQPQRLSK-APGMHSASFAR 434 (741)
T ss_dssp TTCBEEEEEET-----TCCCCEECCC-SCSEEEEEECT
T ss_pred CceEEEEEEEc-----CCCCeeeccc-CCCceEEEECC
Confidence 899999862 1222333443 55677888875
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=1.5e-20 Score=165.98 Aligned_cols=203 Identities=14% Similarity=0.102 Sum_probs=148.9
Q ss_pred CCCCCCCCCCCC-cCceeeEeec-ccCEEEEEECCCCCcEEEEEe--CCCcEEEEEcCCCCCCceeeecccCcceEEEEe
Q 046899 172 GGNGDKPLESPS-IGARGKYLGH-EDTVEDVQFCPSSAQEFCSVG--DDSCLILWDARSGSTPAVKVEKAHNADIHCVDW 247 (407)
Q Consensus 172 ~~~~i~i~d~~~-~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 247 (407)
.++.+.+||..+ ++.......+ ...+.+++|+|++ .+|++++ .++...+|.++.... ....+.. ...+..++|
T Consensus 60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~ 136 (297)
T 2ojh_A 60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGG-TPRLMTK-NLPSYWHGW 136 (297)
T ss_dssp ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCC-CCEECCS-SSSEEEEEE
T ss_pred cCCeEEEEeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCC-ceEEeec-CCCccceEE
Confidence 477899999988 7776666555 3678999999999 7888888 345566665543221 1333333 334889999
Q ss_pred cCCCCCEEE-EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC-CCCccc
Q 046899 248 NPHDVNLIL-TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE-KIGEKQ 325 (407)
Q Consensus 248 ~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~-~~~~~~ 325 (407)
+| +++.|+ +++.++.+++|+++.. ......+..|...+.+++|+|+++++++++..++.+++|++. ......
T Consensus 137 sp-dg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 137 SP-DGKSFTYCGIRDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp CT-TSSEEEEEEEETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred CC-CCCEEEEEECCCCceEEEEEECC-----CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 99 788776 7888999999997542 244566777888999999999999876556569999999987 455666
Q ss_pred ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe-----------eeEEEeeccccccCChHHH--HHH
Q 046899 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV-----------KVLEIWRMIDLIYRPEEEV--LAE 392 (407)
Q Consensus 326 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d-----------~~i~iwd~~~~~~~~~~~~--~~~ 392 (407)
.+..+...+..+.|+|| +..|+.++.+ +.|++||+. +++. +..
T Consensus 211 ~~~~~~~~~~~~~~s~d------------------g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~------~~~~~~~~~ 266 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPS------------------GDKVVFVSYDADVFDHPRDLDVRVQLMDMD------GGNVETLFD 266 (297)
T ss_dssp ECCCCSEEEEEEEECTT------------------SSEEEEEEEETTCCSCCSSEEEEEEEEETT------SCSCEEEEE
T ss_pred EEecCCcccCCeEECCC------------------CCEEEEEEcCCCCCcccccCceEEEEEecC------CCCceeeec
Confidence 67667777777888887 7778877766 689999997 3333 233
Q ss_pred HhhcccceeEeeccC
Q 046899 393 LDKFKSHIFGCDKSC 407 (407)
Q Consensus 393 ~~~h~~~v~~~~~s~ 407 (407)
+.+|...|.+++||+
T Consensus 267 ~~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 267 LFGGQGTMNSPNWSP 281 (297)
T ss_dssp EEESTTTSCSCCBCT
T ss_pred cCCCCcccccceECC
Confidence 447888899999985
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=9.9e-20 Score=188.74 Aligned_cols=195 Identities=11% Similarity=0.023 Sum_probs=153.9
Q ss_pred CCCCCCCCCCCCcCceeeEee-----------cccCEEEEEEC-CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 172 GGNGDKPLESPSIGARGKYLG-----------HEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~~~~~~~-----------~~~~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
.++.+.+|+.... .+..+.. |...+.+++|+ |+| ..+++++ ++.|.+|++..+. ...+..|.
T Consensus 263 ~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~---~~~~~~~~ 336 (1045)
T 1k32_A 263 KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTY---VLKVPEPL 336 (1045)
T ss_dssp ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSB---EEECSCCS
T ss_pred eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCc---eEEccCCC
Confidence 5778888888433 3334433 34478999999 999 7777777 7899999998765 33455677
Q ss_pred c-ceEEEEecCCCCCEEEEEeCCCcEE-EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 240 A-DIHCVDWNPHDVNLILTGSADNSIH-MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 240 ~-~v~~l~~~~~~~~~l~tg~~dg~i~-vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
. .+..++|+ +++.|+.++.++.+. +||+.. ++ ...+..|...+..++|+|+|++| ++++.++.|++||
T Consensus 337 ~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~------~~-~~~l~~~~~~~~~~~~SpDG~~l-a~~~~~~~v~~~d 406 (1045)
T 1k32_A 337 RIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRT------GK-AEKFEENLGNVFAMGVDRNGKFA-VVANDRFEIMTVD 406 (1045)
T ss_dssp CEEEEEECSS--SEEEEEEEETTEEEEEEEETTT------CC-EEECCCCCCSEEEEEECTTSSEE-EEEETTSEEEEEE
T ss_pred cceEEeeeEc--CCCeEEEEECCCceEEEEECCC------CC-ceEecCCccceeeeEECCCCCEE-EEECCCCeEEEEE
Confidence 7 89999999 778888888888888 899886 43 34455788899999999999966 6889999999999
Q ss_pred CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe----------eeEEEeeccccccCChH
Q 046899 318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV----------KVLEIWRMIDLIYRPEE 387 (407)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d----------~~i~iwd~~~~~~~~~~ 387 (407)
+.+++.......+...+..++|||| +.+|+.++.+ +.|++||+. ++
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~SpD------------------G~~la~~~~~~~~~~~~~~~~~i~l~d~~------~g 462 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISDN------------------SRFIAYGFPLKHGETDGYVMQAIHVYDME------GR 462 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECTT------------------SCEEEEEEEECSSTTCSCCEEEEEEEETT------TT
T ss_pred CCCCceEEeccCCCCCccceEECCC------------------CCeEEEEecCccccccCCCCCeEEEEECC------CC
Confidence 9988776666678888999999999 7888877765 499999997 45
Q ss_pred HHHHHHhhcccceeEeeccC
Q 046899 388 EVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 388 ~~~~~~~~h~~~v~~~~~s~ 407 (407)
+ +..+.+|...+.+++||+
T Consensus 463 ~-~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 463 K-IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp E-EEECSCSSSBEEEEEECT
T ss_pred c-EEEeeCCCcccCCceEcC
Confidence 4 556777888888999985
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=6.4e-19 Score=176.38 Aligned_cols=260 Identities=8% Similarity=0.030 Sum_probs=176.7
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCC------CCCCC-------CCcEEEEeccccccccc
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAAD------SHPDL-------DQSVVLWSIQDHVSALA 149 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~------~~~~~-------d~~i~~w~~~~~~~~~~ 149 (407)
.|.+++|+| ++++|++++. +.|.+||+.++. ....+..+.. ..++. ++.|.+|++.++.....
T Consensus 110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence 488999999 8888988886 899999999872 2223333221 22332 66799999887532211
Q ss_pred cC---------------------CCCCcccccCCCCCccccccCCC---------------------------------C
Q 046899 150 AE---------------------PGSAKSTASGGANSKNASKSGGN---------------------------------G 175 (407)
Q Consensus 150 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~ 175 (407)
.. .....+.++| ..+++++.++ .
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg---~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD---SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS---SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCC---CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 11 1122333333 3355544333 6
Q ss_pred CCCCCCCC-cCceeeEe--ecccCEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCCCCCCceeeecccCc----ceE
Q 046899 176 DKPLESPS-IGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGD-----DSCLILWDARSGSTPAVKVEKAHNA----DIH 243 (407)
Q Consensus 176 i~i~d~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~----~v~ 243 (407)
+.+||..+ ++...... .|...+..++| |+| +.|+.++. +..|.+||+.+++ .......+.. .+.
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQ--QRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCC--EEEEEEEECSSCCCCCS
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCc--eEEEEEcCCCCcCCcCC
Confidence 67788887 76554432 37788999999 999 66665543 5789999999887 4444444432 456
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEE-EEcCCCCCEEEEeeCCC--eEEEEeCCC
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCV-QWSPDKSSVFGSSAEDG--ILNIWDHEK 320 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~ll~s~~~d~--~i~vwd~~~ 320 (407)
.++|+| +++++++++.||.+++|.+... +. ...+..|...|..+ .|+|+++.|+++++.++ .++||++..
T Consensus 341 ~~~~sp-dg~~~~~~~~~g~~~l~~~~~~-----~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 341 SLRFLD-DGSILWSSERTGFQHLYRIDSK-----GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CCEECT-TSCEEEEECTTSSCEEEEECSS-----SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ceEECC-CCeEEEEecCCCccEEEEEcCC-----CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 899999 8889999999998888877631 34 77888888889888 59999998876777776 899999864
Q ss_pred -CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe----eeEEEeecc
Q 046899 321 -IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV----KVLEIWRMI 379 (407)
Q Consensus 321 -~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~i~iwd~~ 379 (407)
++....+.. ...+..++|||| +..++....+ +.+.+|+..
T Consensus 414 ~g~~~~~l~~-~~~~~~~~~spd------------------g~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 414 QGGQPQRLSK-APGMHSASFARN------------------ASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp TCCCCEECCC-SCSEEEEEECTT------------------SSEEEEEEEETTEEEEEEEEETT
T ss_pred CCCCeeeccc-CCCceEEEECCC------------------CCEEEEEecCCCCCCeEEEEEcC
Confidence 444555544 455667888888 6666544433 478888864
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.81 E-value=5.5e-19 Score=159.20 Aligned_cols=234 Identities=11% Similarity=0.066 Sum_probs=160.4
Q ss_pred EEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccc
Q 046899 90 RELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNAS 169 (407)
Q Consensus 90 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (407)
.|.+..+.++++++.++.|.+||..+++....+..+... . .+ .+.+.+. ..+++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------------~-~~-------~~s~dg~--~l~~~ 57 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDF----------------V-DT-------AITSDCS--NVVVT 57 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCE----------------E-EE-------EECSSSC--EEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCc----------------c-eE-------EEcCCCC--EEEEE
Confidence 345556777889999999999999887655443321110 0 11 1111221 12333
Q ss_pred ccCCCCCCCCCCCCcCc-eeeEeecccCEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCCCceeeecccCcceEEE
Q 046899 170 KSGGNGDKPLESPSIGA-RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS---CLILWDARSGSTPAVKVEKAHNADIHCV 245 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~l 245 (407)
...++.+.+||..+++. ...+..+..+..+++|+|++ ++++++..++ .|.+||+.+++ ....+. ......++
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~--~~~~~~-~~~~~~~~ 133 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNK--FISTIP-IPYDAVGI 133 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTE--EEEEEE-CCTTEEEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCC--eEEEEE-CCCCccce
Confidence 44577889999988887 77777777666669999999 6677555553 89999998877 444443 34556899
Q ss_pred EecCCCCC-EEEEEeCCCc-EEEEeCCCCCCCCCCCce----eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 246 DWNPHDVN-LILTGSADNS-IHMFDRRKLTSDGVGSPI----HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 246 ~~~~~~~~-~l~tg~~dg~-i~vwd~~~~~~~~~~~~~----~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
+|+| +++ +++++..++. |.+|++.. ...+ .........+..++|+|+|+++++++..++.|++||+.
T Consensus 134 ~~sp-dg~~l~~~~~~~~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 134 AISP-NGNGLILIDRSSANTVRRFKIDA------DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp EECT-TSSCEEEEEETTTTEEEEEEECT------TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EECC-CCCEEEEEecCCCceEEEEEECC------CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 9999 776 4555566688 99999985 2222 12223445689999999999888788889999999999
Q ss_pred CCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE-EEeeeEEEeecc
Q 046899 320 KIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL-TMVKVLEIWRMI 379 (407)
Q Consensus 320 ~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~i~iwd~~ 379 (407)
+++. +..+.. ...+.+++|+|| +.+++.. ..++.|.+||+.
T Consensus 207 ~~~~~~~~~~~~~-~~~~~~~~~spd------------------g~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 207 NPENITLLNAVGT-NNLPGTIVVSRD------------------GSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp STTSCEEEEEEEC-SSCCCCEEECTT------------------SSEEEEECSSEEEEEEEETT
T ss_pred CCcccceeeeccC-CCCCceEEECCC------------------CCEEEEEEcCCCEEEEEECC
Confidence 8877 555554 355678888888 6655433 457789999987
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=1.4e-18 Score=157.76 Aligned_cols=255 Identities=8% Similarity=0.060 Sum_probs=160.8
Q ss_pred eeeEEEeeCCCceEEEEEeCCCCeEEEEeeC--CCcEEEEeCcCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTD--SPDVLIWDVEAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~--dg~i~vwd~~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
........+...+..++|+| ++++++++.. ++.|.+||+.++.... .+..+..
T Consensus 30 ~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~---------------------- 86 (347)
T 3hfq_A 30 LTNDGLLAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT---------------------- 86 (347)
T ss_dssp EEEEEEEEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC----------------------
T ss_pred EEEeeeeeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCC----------------------
Confidence 33445556778889999999 7885545432 6899999996543211 1110100
Q ss_pred cCCCCCcccccCCCCCcccccc-CCCCCCCCCCCC-c--CceeeEee---------cccCEEEEEECCCCCcEEEEEeCC
Q 046899 150 AEPGSAKSTASGGANSKNASKS-GGNGDKPLESPS-I--GARGKYLG---------HEDTVEDVQFCPSSAQEFCSVGDD 216 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~-~--~~~~~~~~---------~~~~v~~l~~~~~~~~~l~s~~~d 216 (407)
.+..+.+.+.|. .++++. .++.+.+|++.. + +.+..+.. +...+.+++|+|++ +++++...+
T Consensus 87 -~p~~~a~spdg~---~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~ 161 (347)
T 3hfq_A 87 -PPAYVAVDEARQ---LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGS 161 (347)
T ss_dssp -CCSEEEEETTTT---EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTT
T ss_pred -CCEEEEECCCCC---EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCC
Confidence 111112222222 233333 567788888752 2 22222221 12248899999999 577777788
Q ss_pred CcEEEEEcC-CCCCCceeeecc-cCcceEEEEecCCCCCEEEE-EeCCCcEEEEeCCCCCCCCCCC--ceeeecCCC---
Q 046899 217 SCLILWDAR-SGSTPAVKVEKA-HNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGS--PIHKFEGHS--- 288 (407)
Q Consensus 217 g~i~iwd~~-~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~t-g~~dg~i~vwd~~~~~~~~~~~--~~~~~~~h~--- 288 (407)
+.|.+||+. ++.......... ....+..++|+| +++++++ +..++.|.+|++.... ++ .+..+....
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~ 236 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT----GAFTQLGIVKTIPADY 236 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT----TEEEEEEEEESSCTTC
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----CceEEeeeeeecCCCC
Confidence 999999998 443111111122 234678899999 8885555 5678899999987411 22 233333222
Q ss_pred ---CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC---CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc
Q 046899 289 ---AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI---GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR 362 (407)
Q Consensus 289 ---~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~ 362 (407)
..+..++|+|+|++|+++...++.|.+||+... +.+..+..+...+.+++|+|| +.
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd------------------g~ 298 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT------------------EA 298 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT------------------SS
T ss_pred CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC------------------CC
Confidence 458999999999988778888999999999732 334445555556778888888 77
Q ss_pred eeeeEEEe-eeEEEeecc
Q 046899 363 LLVCLTMV-KVLEIWRMI 379 (407)
Q Consensus 363 ~i~~~~~d-~~i~iwd~~ 379 (407)
.|++++.+ +.|.+|++.
T Consensus 299 ~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 299 FVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred EEEEEEcCCCcEEEEEEe
Confidence 77776654 799999664
No 144
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=9.2e-19 Score=159.86 Aligned_cols=276 Identities=10% Similarity=0.033 Sum_probs=166.0
Q ss_pred eeEEEeeCCCceEEEEEeCCCCeEEEEeeCC----CcEEEEeCcCCC-CcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDS----PDVLIWDVEAQP-NRHAVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d----g~i~vwd~~~~~-~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
...... |...+..++|+| ++++|++++.+ +.|.+|++.... ....+...... .....-.
T Consensus 42 ~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~----~~~p~~~---------- 105 (361)
T 3scy_A 42 LPLSDA-EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM----GADPCYL---------- 105 (361)
T ss_dssp EEEEEE-ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS----SSCEEEE----------
T ss_pred EEeecc-cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC----CCCcEEE----------
Confidence 333444 788889999999 88888888875 799999987631 11111000000 0000000
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE---e-----------ecccCEEEEEECCCCCcEEEEEeC
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY---L-----------GHEDTVEDVQFCPSSAQEFCSVGD 215 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~---~-----------~~~~~v~~l~~~~~~~~~l~s~~~ 215 (407)
...+. ..+++...++.+.+|++.....+... . .+...+.+++|+|++..+++++..
T Consensus 106 --------~~dg~--~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 106 --------TTNGK--NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp --------EECSS--EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred --------EECCC--EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 00000 01122224455666655432222111 0 122346889999999445555556
Q ss_pred CCcEEEEEcCCCCC----C-c------eeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCc--e
Q 046899 216 DSCLILWDARSGST----P-A------VKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSP--I 281 (407)
Q Consensus 216 dg~i~iwd~~~~~~----~-~------~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~--~ 281 (407)
++.|.+|++..... . . ..........+..++|+| +++++++++ .++.|.+||+.. +.. +
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~------g~~~~~ 248 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYAD------GMLDEI 248 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEET------TEEEEE
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecC------CceEEe
Confidence 89999999876541 1 1 122233455678999999 888777766 689999999985 432 3
Q ss_pred eee---cCCCCCEEEEEEcCCCCCEEEEeeC-CCeEEEEeCC--CCC--cccccccCCCcccCCCCcCcchhccccceee
Q 046899 282 HKF---EGHSAAVLCVQWSPDKSSVFGSSAE-DGILNIWDHE--KIG--EKQDYGELKYPIIHPAYSSDMLDIETKLLTS 353 (407)
Q Consensus 282 ~~~---~~h~~~v~~v~~~~~~~~ll~s~~~-d~~i~vwd~~--~~~--~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 353 (407)
..+ ..+......++|+|+|++|+++... ++.|.+|++. +++ .+..+.. ...+.+++|+||
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spd----------- 316 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPN----------- 316 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTT-----------
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCC-----------
Confidence 333 2344567899999999988766666 6899999996 222 3333433 445667888888
Q ss_pred eeEeeCccceeeeEE-EeeeEEEeeccccccCChHHHHHHH-hhcccceeEeecc
Q 046899 354 IGMHLIHGRLLVCLT-MVKVLEIWRMIDLIYRPEEEVLAEL-DKFKSHIFGCDKS 406 (407)
Q Consensus 354 ~~~~~~~~~~i~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s 406 (407)
+.+|++++ .++.|.+|++... ++++.... ..+...+.||+|+
T Consensus 317 -------g~~l~~~~~~~~~v~v~~~d~~----~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 317 -------GKYLLVACRDTNVIQIFERDQA----TGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp -------SCEEEEEETTTTEEEEEEECTT----TCCEEECSCCEECSSEEEEEEE
T ss_pred -------CCEEEEEECCCCCEEEEEEECC----CCcEeecceeeeCCCCeEEEEc
Confidence 77777776 5679999766410 23332222 2355678899886
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.80 E-value=3.6e-19 Score=160.50 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=171.8
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCC---ceEEEEEeCCCC-eEEEEeeCCCcEEEEeCcCCCCccccc
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPG---EVNRIRELPQNS-KIVATHTDSPDVLIWDVEAQPNRHAVL 123 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~ 123 (407)
++++..++.+.+|- ....+....+.+.. .+..++|+| ++ .+++++..++.|.+||+.+++....+.
T Consensus 4 ~v~~~~~~~v~~~d---------~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 4 ILAPARPDKLVVID---------TEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEETTTEEEEEE---------TTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred EEEcCCCCeEEEEE---------CCCCcEEEEEEcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 45667788888881 11122334444444 589999999 55 556777778999999998876544332
Q ss_pred CcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc------------CCCCCCCCCCCCcCceeeEe
Q 046899 124 GAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS------------GGNGDKPLESPSIGARGKYL 191 (407)
Q Consensus 124 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~i~d~~~~~~~~~~~ 191 (407)
..... .....+....+.+.|. .++++. .++.+.+||..+++.+..+.
T Consensus 74 ~~~~~------------------~~~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 132 (337)
T 1pby_B 74 LSTPE------------------ERVKSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132 (337)
T ss_dssp CCBTT------------------EEEECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred cCCcc------------------cccccccceEECCCCC---EEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence 11100 0000011111222221 122222 46889999998888777665
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--------
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN-------- 262 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg-------- 262 (407)
. ...+.+++|+|++ ++++++ ++.|.+||+.+++ ....+..+.. ...+.|+| ++..++..+. ++
T Consensus 133 ~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 133 A-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGT--LVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp C-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTE--EEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEEEE
T ss_pred C-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCc--Eeeeeecccc-CCCceeCC-CccEEeeeccCCCceeeeeec
Confidence 4 4567889999999 656666 6899999999877 3444333320 11237888 6665544433 22
Q ss_pred ---------------cEEEEeCCCCCCCCCCCce-eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899 263 ---------------SIHMFDRRKLTSDGVGSPI-HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD 326 (407)
Q Consensus 263 ---------------~i~vwd~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 326 (407)
.|.+||+++ ++.. ..+..+...+.+++|+|++++++ ++ ++.|.+||+.+++.+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLET------GEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKNASIKR 275 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTT------CCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTTEEEEE
T ss_pred cccccccccccccccceEEEeCCC------CCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEEECCCCcCcce
Confidence 468999988 5543 33445667889999999999775 44 79999999998777666
Q ss_pred cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+... ..+.+++|+|| +..+++++.++.|++||+.
T Consensus 276 ~~~~-~~~~~~~~s~d------------------g~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 276 VPLP-HSYYSVNVSTD------------------GSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EECS-SCCCEEEECTT------------------SCEEEEESBSSEEEEEETT
T ss_pred ecCC-CceeeEEECCC------------------CCEEEEEcCCCcEEEEECc
Confidence 5533 34567778777 7777777888999999997
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.79 E-value=6.3e-18 Score=153.47 Aligned_cols=238 Identities=10% Similarity=0.084 Sum_probs=164.1
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
....+.....+..++|+|+...+++++..++.|.+||..+++....+..+....+....... +...
T Consensus 81 ~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 146 (353)
T 3vgz_A 81 VTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQ--------------PREL 146 (353)
T ss_dssp EEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCE--------------EEEE
T ss_pred EEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCC--------------CceE
Confidence 34444556678899999944446667777899999999987765544332211100000000 0011
Q ss_pred cccccCCCCCccccc-cCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899 156 KSTASGGANSKNASK-SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 234 (407)
.+.+.+.. .+++. ..++.+.+||..+++.+..+..+...+.+++|+|++ ..+++++.++.|.+||+.+++ ....
T Consensus 147 ~~s~dg~~--l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~--~~~~ 221 (353)
T 3vgz_A 147 VADDATNT--VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNK--ILSR 221 (353)
T ss_dssp EEETTTTE--EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTE--EEEE
T ss_pred EECCCCCE--EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCe--EEEE
Confidence 11112211 11222 346779999999988888876566678899999999 778888889999999999877 3433
Q ss_pred ecc----cCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 235 EKA----HNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 235 ~~~----~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
... +...+.+++|+| +++++++++. ++.|.+||+.+ ++.+..+..... ..++|+|++++++++...
T Consensus 222 ~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~ 292 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRN------GNILAKVAAPES--LAVLFNPARNEAYVTHRQ 292 (353)
T ss_dssp EECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTT------CCEEEEEECSSC--CCEEEETTTTEEEEEETT
T ss_pred EEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCC--ceEEECCCCCEEEEEECC
Confidence 332 455678899999 7776666554 59999999988 788877775432 679999999988877778
Q ss_pred CCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899 310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342 (407)
Q Consensus 310 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 342 (407)
++.|.+||+.+++.+..+.... .+.+++|++|
T Consensus 293 ~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~d 324 (353)
T 3vgz_A 293 AGKVSVIDAKSYKVVKTFDTPT-HPNSLALSAD 324 (353)
T ss_dssp TTEEEEEETTTTEEEEEEECCS-EEEEEEECTT
T ss_pred CCeEEEEECCCCeEEEEEecCC-CCCeEEEcCC
Confidence 9999999999987776665433 4567788877
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=5.5e-19 Score=171.90 Aligned_cols=255 Identities=10% Similarity=-0.002 Sum_probs=168.8
Q ss_pred CCCceEEEEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCcccccCcC------CCCCCC----------CCcEEEEeccc-
Q 046899 82 HPGEVNRIRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVLGAA------DSHPDL----------DQSVVLWSIQD- 143 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~------~~~~~~----------d~~i~~w~~~~- 143 (407)
+..+|++++|+| +|+.||+++. ||+++||++.++........+. ...++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEecc
Confidence 356799999999 8888998877 9999999987654333222221 111110 22334443322
Q ss_pred ---cccccccCCCC--CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC--
Q 046899 144 ---HVSALAAEPGS--AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-- 216 (407)
Q Consensus 144 ---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-- 216 (407)
....+...... ..+.+.+. ...++...++...+||+.+++.......+ . .+++|+|+| +.+++++.+
T Consensus 99 ~~g~~~~l~~~~~~~~~~~s~dg~--~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG-~~la~~~~~~~ 172 (582)
T 3o4h_A 99 RPGEEQRLEAVKPMRILSGVDTGE--AVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRG-DLIAGLGFFGG 172 (582)
T ss_dssp STTCCEECTTSCSBEEEEEEECSS--CEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEET-TEEEEEEEEET
T ss_pred CCCccccccCCCCceeeeeCCCCC--eEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCC-CEEEEEEEcCC
Confidence 11111111110 11222221 12233334445559998887665544433 3 789999999 788877776
Q ss_pred --CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEE
Q 046899 217 --SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVL 292 (407)
Q Consensus 217 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~ 292 (407)
+.|++||+.+++ ...+..|...+..++|+| |++.|+++..++ .|++||+.+ ++.. .+..|...+.
T Consensus 173 ~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~------~~~~-~~~~~~~~~~ 241 (582)
T 3o4h_A 173 GRVSLFTSNLSSGG---LRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD------GSVE-DLELPSKDFS 241 (582)
T ss_dssp TEEEEEEEETTTCC---CEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT------CCEE-ECCCSCSHHH
T ss_pred CCeEEEEEcCCCCC---ceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC------CcEE-EccCCCcChh
Confidence 789999998877 345678888899999999 999999888888 899999987 6666 7777877777
Q ss_pred EEE--------EcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcccee
Q 046899 293 CVQ--------WSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL 364 (407)
Q Consensus 293 ~v~--------~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i 364 (407)
.++ |+|+| .++++++.|+++++|++ ++.... ....+.+++|+ | +..+
T Consensus 242 ~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-d------------------g~~l 296 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-R------------------GKLV 296 (582)
T ss_dssp HHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-T------------------TEEE
T ss_pred hhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-C------------------CEEE
Confidence 777 99999 57789999999999999 443331 22344444554 4 6666
Q ss_pred eeEEEee---eEEEeecc
Q 046899 365 VCLTMVK---VLEIWRMI 379 (407)
Q Consensus 365 ~~~~~d~---~i~iwd~~ 379 (407)
++++.+. .|.+||..
T Consensus 297 ~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEEEETTC
T ss_pred EEEcCCCCCCeEEEEcCC
Confidence 7666664 57777754
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.78 E-value=3.9e-18 Score=169.78 Aligned_cols=263 Identities=11% Similarity=0.051 Sum_probs=175.1
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc-----CCCCCCC-------CCcEEEEeccc-----ccc
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA-----ADSHPDL-------DQSVVLWSIQD-----HVS 146 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~-------d~~i~~w~~~~-----~~~ 146 (407)
..|.+++|+| ++.++++. ++.|++||+.+++........ ....++. ++.|.+|++.+ +..
T Consensus 82 ~~v~~~~~sp-d~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAG-RGLVVLFT--QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETT-TTEEEEEE--TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECC-CCeEEEEE--CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCc
Confidence 5799999999 56555553 489999999877543322111 1122222 78899999987 432
Q ss_pred cc-cc-CC-----------------CCCcccccCCCCCcccccc---------------------------------CCC
Q 046899 147 AL-AA-EP-----------------GSAKSTASGGANSKNASKS---------------------------------GGN 174 (407)
Q Consensus 147 ~~-~~-~~-----------------~~~~~~~~~~~~~~~~~~~---------------------------------~~~ 174 (407)
.. .. .. ....+.++| ..+++++ .+.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 11 11 11 122233333 3344443 345
Q ss_pred CCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCC-----cEEEEEcCCCCCCceeee-cccCc---ceE
Q 046899 175 GDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDS-----CLILWDARSGSTPAVKVE-KAHNA---DIH 243 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~~---~v~ 243 (407)
.+.+||+.+++...... .|...+.+++|+|++ +.|++++.++ .|.+||+.+++. ..... ..+.. .+.
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECccC
Confidence 68889998877544432 466789999999999 7777777665 899999998831 12221 12222 246
Q ss_pred EEEecC-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEE-EEEcCCCCCEEEEeeCCC----eEEEEe
Q 046899 244 CVDWNP-HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG----ILNIWD 317 (407)
Q Consensus 244 ~l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~ll~s~~~d~----~i~vwd 317 (407)
++.|+| .+++++++++.||.+++|++... +..+..+..|...+.+ ++|+|+++.|+++++.++ .|..||
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECC-----CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 789998 24578999999999999988621 5677888888888887 799999998876777665 777778
Q ss_pred CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe----eeEEEeecc
Q 046899 318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV----KVLEIWRMI 379 (407)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~i~iwd~~ 379 (407)
+.+++ ...+. +...+..++|||| +..|+..+.+ +.|++||+.
T Consensus 389 ~~~~~-~~~l~-~~~~~~~~~~spd------------------g~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 389 IKGGK-TKDLT-PESGMHRTQLSPD------------------GSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp TTCCC-CEESC-CSSSEEEEEECTT------------------SSEEEEEEECSSCSCEEEEEESS
T ss_pred cCCCC-ceecc-CCCceEEEEECCC------------------CCEEEEEecCCCCCcEEEEEECC
Confidence 77654 33333 4555777888888 6666655444 369999986
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.77 E-value=1.3e-17 Score=172.86 Aligned_cols=262 Identities=11% Similarity=0.013 Sum_probs=188.3
Q ss_pred EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC-CCCcccccCcCCC-----CCCC-------CCcEEEEecccc
Q 046899 78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA-QPNRHAVLGAADS-----HPDL-------DQSVVLWSIQDH 144 (407)
Q Consensus 78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~-~~~~~~~~~~~~~-----~~~~-------d~~i~~w~~~~~ 144 (407)
.+.+|.+.+.++.|++ + .++++++.|+.++||.+.. +.....+..+... .++. ++.+.+|++...
T Consensus 198 ~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTE 275 (1045)
T ss_dssp EEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTC
T ss_pred ECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCce
Confidence 3467999999999998 5 7888888999999998764 2223333222211 1111 677888887433
Q ss_pred ccc-cccC--------------CCCCccc-ccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc-CEEEEEECCCCC
Q 046899 145 VSA-LAAE--------------PGSAKST-ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED-TVEDVQFCPSSA 207 (407)
Q Consensus 145 ~~~-~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~v~~l~~~~~~~ 207 (407)
... +... .....+. +.| ..+++++ ++.+.+|+...++.. .+..|.. .+..++|+ ++
T Consensus 276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg- 348 (1045)
T 1k32_A 276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TK- 348 (1045)
T ss_dssp CEEECCCCCCCBCCSEEEECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SE-
T ss_pred EeeeeccCcccccccccccccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CC-
Confidence 211 1110 1112223 333 2344444 778888988776644 3556666 89999999 88
Q ss_pred cEEEEEeCCCcEE-EEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899 208 QEFCSVGDDSCLI-LWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286 (407)
Q Consensus 208 ~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 286 (407)
..|+.++.++.+. +||+..+. ...+..|...+..++|+| ++++|++++.++.|++||+.+ ++....+..
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~---~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~t------g~~~~~~~~ 418 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET------GKPTVIERS 418 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCC---EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEEEEEC
T ss_pred CeEEEEECCCceEEEEECCCCC---ceEecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCC------CceEEeccC
Confidence 7888888888888 99998766 333447788899999999 999999999999999999998 777777778
Q ss_pred CCCCEEEEEEcCCCCCEEEEeeCC----------CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeE
Q 046899 287 HSAAVLCVQWSPDKSSVFGSSAED----------GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGM 356 (407)
Q Consensus 287 h~~~v~~v~~~~~~~~ll~s~~~d----------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~ 356 (407)
|...+.+++|+|+|++|+ +++.+ +.|++||+.+++ ...+..+...+..++|+||
T Consensus 419 ~~~~v~~~~~SpDG~~la-~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd-------------- 482 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIA-YGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD-------------- 482 (1045)
T ss_dssp SSSCCCCEEECTTSCEEE-EEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT--------------
T ss_pred CCCCccceEECCCCCeEE-EEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC--------------
Confidence 999999999999999774 55544 499999999865 6666677777777889888
Q ss_pred eeCccceeeeEEEeeeEEEeec
Q 046899 357 HLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 357 ~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
+..|+..+.++..++|+.
T Consensus 483 ----G~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 483 ----SKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp ----SCEEEEEESCCCCCEECS
T ss_pred ----CCEEEEEecccCCcCcch
Confidence 777777777666666654
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=5.3e-19 Score=160.27 Aligned_cols=232 Identities=10% Similarity=0.044 Sum_probs=155.8
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899 89 IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA 168 (407)
Q Consensus 89 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (407)
+++.+ ++.++++++.+++|.+||..+++....+...... . +....+.+.+. ..++
T Consensus 5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------------~-------~~~~~~s~dg~--~~~v 59 (349)
T 1jmx_B 5 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF---------------G-------PGTAMMAPDNR--TAYV 59 (349)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC---------------S-------SCEEEECTTSS--EEEE
T ss_pred ccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCC---------------C-------CceeEECCCCC--EEEE
Confidence 34555 7889999999999999999877554443222100 0 11111112221 1233
Q ss_pred cccCCCCCCCCCCCCcCceeeEeec------ccCEEEEEECCCCCcEEEEEeCC------------CcEEEEEcCCCCCC
Q 046899 169 SKSGGNGDKPLESPSIGARGKYLGH------EDTVEDVQFCPSSAQEFCSVGDD------------SCLILWDARSGSTP 230 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~ 230 (407)
+...++.+.+||..+++.+..+..+ ...+.+++|+|++ +++++++.+ +.|.+||+.+++..
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 4456788999999888877666532 2337889999999 677777754 89999999875411
Q ss_pred -ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC---------------------
Q 046899 231 -AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS--------------------- 288 (407)
Q Consensus 231 -~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~--------------------- 288 (407)
..... .+...+.+++|+| +++ +++++. .|.+||+.+ ++.+..+..+.
T Consensus 139 ~~~~~~-~~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (349)
T 1jmx_B 139 KPVRTF-PMPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKT------GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 207 (349)
T ss_dssp CCSEEE-ECCSSCCCEEECT-TSC-EEEESS--SEEEECTTT------CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred ceeeec-cCCCcccceeECC-CCc-EEEccC--cEEEEeCCC------CceeccccccccCCccccCccceeeecCCCcc
Confidence 12222 3444688999999 788 555443 499999987 55554443221
Q ss_pred -----------------------------------------------CCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCC
Q 046899 289 -----------------------------------------------AAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 289 -----------------------------------------------~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
..+.+++|+| ++++++ ++ ++.|.+||+.+
T Consensus 208 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~-~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 208 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GV--LNRLAKYDLKQ 284 (349)
T ss_dssp CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE-EE--ESEEEEEETTT
T ss_pred eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE-EE--cCeEEEEECcc
Confidence 1456778889 999765 44 88999999998
Q ss_pred CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 321 IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 321 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
++....+... ..+.+++|++| +..|++++.++.|++||..
T Consensus 285 ~~~~~~~~~~-~~~~~~~~s~d------------------g~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 285 RKLIKAANLD-HTYYCVAFDKK------------------GDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp TEEEEEEECS-SCCCEEEECSS------------------SSCEEEESBSSEEEEEETT
T ss_pred CeEEEEEcCC-CCccceEECCC------------------CCEEEEecCCCeEEEEecc
Confidence 7766665532 34567778777 7777777778999999997
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.77 E-value=9.7e-19 Score=174.58 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=147.9
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
..+.+++|+| +++++++ +.||+|++||+.+++....+..+..... ....+..+++ |
T Consensus 17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~-------------~v~~~~~SpD-------g-- 72 (723)
T 1xfd_A 17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESL-------------RAIRYEISPD-------R-- 72 (723)
T ss_dssp CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTT-------------TCSEEEECTT-------S--
T ss_pred ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEecccccccc-------------ccceEEECCC-------C--
Confidence 3467889999 7887766 7899999999998876655544322100 0011112222 1
Q ss_pred CCccccccC---------CCCCCCCCCCCcCceeeEe---ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899 164 NSKNASKSG---------GNGDKPLESPSIGARGKYL---GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA 231 (407)
Q Consensus 164 ~~~~~~~~~---------~~~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 231 (407)
..+++++. ++.+.+||+.+++. ..+. +|...+..++|+|+| +.|+.++. +.|++||+.+++ .
T Consensus 73 -~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~--~ 146 (723)
T 1xfd_A 73 -EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQ--A 146 (723)
T ss_dssp -SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSC--C
T ss_pred -CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCc--e
Confidence 12333322 35666999888775 2232 344558899999999 77888775 799999999877 3
Q ss_pred eeeecccCcc------------------eEEEEecCCCCCEEEEEeCCC-------------------------------
Q 046899 232 VKVEKAHNAD------------------IHCVDWNPHDVNLILTGSADN------------------------------- 262 (407)
Q Consensus 232 ~~~~~~~~~~------------------v~~l~~~~~~~~~l~tg~~dg------------------------------- 262 (407)
......+... +.+++|+| |++.|++++.|+
T Consensus 147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 225 (723)
T 1xfd_A 147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN 225 (723)
T ss_dssp EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred EEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence 3333333332 37899999 999999887553
Q ss_pred ---cEEEEeCCCCCCCCCCCceeeecCC------CCCEEEEEEcCCCCCEEEEee----CCCeEEEEeCCCCCccccccc
Q 046899 263 ---SIHMFDRRKLTSDGVGSPIHKFEGH------SAAVLCVQWSPDKSSVFGSSA----EDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 263 ---~i~vwd~~~~~~~~~~~~~~~~~~h------~~~v~~v~~~~~~~~ll~s~~----~d~~i~vwd~~~~~~~~~~~~ 329 (407)
.|++||+.+ ++....+..+ ...+.+++|+|||+.+ ++.+ .+..|++||+.+++....+..
T Consensus 226 ~~~~l~~~d~~~------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 226 PSISLHVIGLNG------PTHDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp CEEEEEEEESSS------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CeeEEEEEECCC------CceeEEeeCCccCCCccceeEEEEEeCCCeEE-EEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 799999987 5655666554 5679999999999965 3443 236899999998776554433
Q ss_pred -CCCcc----cCCCCcCc
Q 046899 330 -LKYPI----IHPAYSSD 342 (407)
Q Consensus 330 -~~~~v----~~~~~s~d 342 (407)
+...+ ..++||||
T Consensus 299 ~~~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 299 ESEAWLHRQNEEPVFSKD 316 (723)
T ss_dssp ECSSCCCCCCCCCEECTT
T ss_pred ccCCEEeccCCCceEcCC
Confidence 23333 37889888
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.76 E-value=7.8e-19 Score=174.80 Aligned_cols=278 Identities=10% Similarity=0.113 Sum_probs=176.7
Q ss_pred eEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-ccccCcC-----------------------CCCCCC------CCc
Q 046899 86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-HAVLGAA-----------------------DSHPDL------DQS 135 (407)
Q Consensus 86 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-~~~~~~~-----------------------~~~~~~------d~~ 135 (407)
++.+.|. ++.+++++.|+ | +||+.+++.. ..+..+. ...++. ++.
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~ 102 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGG 102 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTE
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCE
Confidence 5557777 34566667777 8 9999988762 2221111 011111 789
Q ss_pred EEEEeccccccc-cccCCC---CCcccccCCCCCccccccCCCCCCCCCCCC-----cCceeeEeecccC----------
Q 046899 136 VVLWSIQDHVSA-LAAEPG---SAKSTASGGANSKNASKSGGNGDKPLESPS-----IGARGKYLGHEDT---------- 196 (407)
Q Consensus 136 i~~w~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~---------- 196 (407)
+.+||+.++... +..... ...+.+.| ..+++ ..++.+.+|++.+ ++.......+...
T Consensus 103 i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG---~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 103 LVGFDMLARKVTYLFDTNEETASLDFSPVG---DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp EEEEETTTTEEEEEECCTTCCTTCEECTTS---SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred EEEEECCCCceEEccCCcccccCCcCCCCC---CEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 999999876432 222222 23344444 33555 4678999999988 7766554444433
Q ss_pred ----EEEEEECCCCCcEEEEEe---------------------------------CCCcEEEEEcCCCCCCceeeecccC
Q 046899 197 ----VEDVQFCPSSAQEFCSVG---------------------------------DDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 197 ----v~~l~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
+.+++|+|+| +.|++++ .+..|.+||+.+++.........|.
T Consensus 179 e~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 179 EFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp CTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 4889999999 7788776 4578999999887621111112566
Q ss_pred cceEEEEecCCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCCceeeec--CCC---CCEEEEEEcC--CCCCEEEEe
Q 046899 240 ADIHCVDWNPHDVNLILTGSADN-----SIHMFDRRKLTSDGVGSPIHKFE--GHS---AAVLCVQWSP--DKSSVFGSS 307 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~--~h~---~~v~~v~~~~--~~~~ll~s~ 307 (407)
..+.+++|+| +++.|++++.++ .|++||+.+ ++....+. .+. ..+.+++|+| +|++ ++++
T Consensus 258 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~~~ 329 (706)
T 2z3z_A 258 KFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAET------GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IWQS 329 (706)
T ss_dssp CEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTT------CCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EEEE
T ss_pred eeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCC------CceeeEEEEccCCCeECccCCceeecCCCCEE-EEEE
Confidence 7899999999 999998887775 899999988 53333332 122 2346789999 9985 4688
Q ss_pred eCCCeEEEEeCC-CCCcccccccCCCcccC-CCCcCcchhccccceeeeeEeeCccceeeeEEE-ee----eEEEeeccc
Q 046899 308 AEDGILNIWDHE-KIGEKQDYGELKYPIIH-PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VK----VLEIWRMID 380 (407)
Q Consensus 308 ~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~-~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~----~i~iwd~~~ 380 (407)
+.|+.++||++. .++.+..+..+...+.. ++|+|| +..|+..+. ++ .|..||+.
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spd------------------g~~l~~~~~~~~~~~~~l~~~d~~- 390 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPK------------------GTRLYFESTEASPLERHFYCIDIK- 390 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTT------------------SSEEEEEESSSCTTCBEEEEEETT-
T ss_pred ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCC------------------CCEEEEEecCCCCceEEEEEEEcC-
Confidence 889999999886 55666667666666665 678887 666654444 33 55566654
Q ss_pred cccCChHHHHHHHhhcccceeEeeccC
Q 046899 381 LIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
+++ +..+ .|...+.+++||+
T Consensus 391 -----~~~-~~~l-~~~~~~~~~~~sp 410 (706)
T 2z3z_A 391 -----GGK-TKDL-TPESGMHRTQLSP 410 (706)
T ss_dssp -----CCC-CEES-CCSSSEEEEEECT
T ss_pred -----CCC-ceec-cCCCceEEEEECC
Confidence 222 1222 2666788888885
No 153
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.74 E-value=1.8e-16 Score=143.08 Aligned_cols=245 Identities=11% Similarity=0.063 Sum_probs=147.1
Q ss_pred CeeEEEEeec---ccccCcc-ceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEe-eCCCcEEEEe
Q 046899 38 PSLSCRWGPQ---LEQATYK-NRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATH-TDSPDVLIWD 112 (407)
Q Consensus 38 p~~s~~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd 112 (407)
+...+.|.|+ ++.+..+ +.+++|. .+.+ .............+.+..++|+| ++++|+++ ..++.|.+||
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYR---IAPD--DGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEE---ECTT--TCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEE---ecCC--CCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEE
Confidence 4445777764 4454444 7788882 2211 11223333344445899999999 66656554 4588999999
Q ss_pred CcCC---CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccc-cCCCCCCCCCCCC-cCce
Q 046899 113 VEAQ---PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASK-SGGNGDKPLESPS-IGAR 187 (407)
Q Consensus 113 ~~~~---~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~d~~~-~~~~ 187 (407)
+..+ .....+..+ . .+....+.+.+. .++++ ..++.+.+||+.. ++..
T Consensus 113 ~~~~~~~~~~~~~~~~-----------------~-------~~~~~~~s~dg~---~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGL-----------------D-------GCHSANISPDNR---TLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp EETTEEEEEEEEECCC-----------------T-------TBCCCEECTTSS---EEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CCCCccccccccccCC-----------------C-------CceEEEECCCCC---EEEEecCCCCEEEEEEecCCCcee
Confidence 9522 111111110 0 011122222222 23333 3678888998876 4432
Q ss_pred e----eEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCCCceeeec----cc--CcceEEEEecCCCCCE
Q 046899 188 G----KYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GSTPAVKVEK----AH--NADIHCVDWNPHDVNL 254 (407)
Q Consensus 188 ~----~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~----~~--~~~v~~l~~~~~~~~~ 254 (407)
. .... ....+.+++|+|++..+++++..++.|.+||++. +......... .+ ...+.+++|+| ++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~ 244 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRH 244 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCE
Confidence 2 2222 3457889999999944555666899999999964 3311111211 11 23566899999 7776
Q ss_pred EE-EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 255 IL-TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 255 l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
|+ ++..++.|.+||+.... +..+.+..+..+.. +.+++|+|++++|++++..++.|.+|++.
T Consensus 245 l~v~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDG--SVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEETTTTEEEEEEECTTS--CCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCC--CceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 66 55578999999998311 00345555655544 88999999999887666578999999544
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=6.7e-16 Score=141.09 Aligned_cols=257 Identities=12% Similarity=0.007 Sum_probs=155.6
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc-CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc-ccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE-AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK-STA 159 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~ 159 (407)
....+..++|+| ++++|++++.+ .|.+|++. +++...... +. .......+..++++.. ++.
T Consensus 38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~~--------------~~g~~~~~~~spdg~~l~~~ 100 (365)
T 1jof_A 38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-HP--------------IGGHPRANDADTNTRAIFLL 100 (365)
T ss_dssp TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEE-EE--------------CCSSGGGGCTTSCCEEEEEE
T ss_pred CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeE-ee--------------cCCCCccEEECCCCCEEEEE
Confidence 445788999999 88888888887 99999997 443221110 00 0000011111221110 000
Q ss_pred cCCCCCcccccc----CCCCCCCCCCC-CcCceeeEe----ecccCEEEEEECCCCCcEEEEEe-CCCcEEEEEcC-CCC
Q 046899 160 SGGANSKNASKS----GGNGDKPLESP-SIGARGKYL----GHEDTVEDVQFCPSSAQEFCSVG-DDSCLILWDAR-SGS 228 (407)
Q Consensus 160 ~~~~~~~~~~~~----~~~~i~i~d~~-~~~~~~~~~----~~~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~ 228 (407)
..........+. .++.+.+|++. .++....+. .+...+.+++|+|+| ++++++. .++.|++||+. +++
T Consensus 101 ~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 101 AAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGE 179 (365)
T ss_dssp ECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSC
T ss_pred EecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCC
Confidence 000000000011 56778888876 355443333 245679999999999 5666554 46899999998 665
Q ss_pred CCceeeec--ccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCce------eeec----CCCC------
Q 046899 229 TPAVKVEK--AHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPI------HKFE----GHSA------ 289 (407)
Q Consensus 229 ~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~------~~~~----~h~~------ 289 (407)
........ .+...+..++|+| +++++++++. ++.|.+|++.... ++.. ..+. +|..
T Consensus 180 ~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (365)
T 1jof_A 180 VELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPAT----HMPVYTHHSFPLIPPGIPDRDPETGKGL 254 (365)
T ss_dssp EEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTT----CCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred EEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCC----CcEEEccceEEcCCCCcCCccccccccc
Confidence 21122222 2456789999999 8888877765 6899999875311 3332 1222 1222
Q ss_pred CEEEEE-EcCCCCCEEEEeeCCC-----eEEEEeCC-CCCccc---ccccCCCcccCCCCcC---cchhccccceeeeeE
Q 046899 290 AVLCVQ-WSPDKSSVFGSSAEDG-----ILNIWDHE-KIGEKQ---DYGELKYPIIHPAYSS---DMLDIETKLLTSIGM 356 (407)
Q Consensus 290 ~v~~v~-~~~~~~~ll~s~~~d~-----~i~vwd~~-~~~~~~---~~~~~~~~v~~~~~s~---d~~~~~~~~~~~~~~ 356 (407)
.+..++ |+|+|++|+++...++ +|.+|++. +++... ....+...+..++|+| |
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d-------------- 320 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS-------------- 320 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC--------------
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC--------------
Confidence 588999 9999998865554343 89999996 433222 1223444567888888 5
Q ss_pred eeCccceeeeEEEe-eeEEEeecc
Q 046899 357 HLIHGRLLVCLTMV-KVLEIWRMI 379 (407)
Q Consensus 357 ~~~~~~~i~~~~~d-~~i~iwd~~ 379 (407)
+.+|++++.+ ++|+||++.
T Consensus 321 ----g~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 321 ----DEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ----TTEEEEECSSSCEEEEEEEE
T ss_pred ----CCEEEEEEcCCCeEEEEEEc
Confidence 7778877764 799999986
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=170.64 Aligned_cols=300 Identities=13% Similarity=0.083 Sum_probs=174.5
Q ss_pred eEEEEeec--ccccCccceEEEEeecccCcccCCcceeeEEEeeCCC----ceEEEEEeCCCCeEEEEeeC---------
Q 046899 40 LSCRWGPQ--LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPG----EVNRIRELPQNSKIVATHTD--------- 104 (407)
Q Consensus 40 ~s~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~l~tg~~--------- 104 (407)
.+..|.|+ +...+.++.+++|-. .......+..+.. .+.+++|+| +|++||+++.
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNI---------ETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEES---------SSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEc---------CCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeec
Confidence 35677775 333345778888821 1122333333332 399999999 8899988876
Q ss_pred CCcEEEEeCcCCCCc--ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC
Q 046899 105 SPDVLIWDVEAQPNR--HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP 182 (407)
Q Consensus 105 dg~i~vwd~~~~~~~--~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 182 (407)
++.|++||+.+++.. ..+.. . .....+.++|. .++++ .++.+.+|+..
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l~~-------------------~-------~~~~~~SPDG~---~la~~-~~~~i~~~~~~ 138 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNELPR-------------------P-------IQYLCWSPVGS---KLAYV-YQNNIYLKQRP 138 (719)
T ss_dssp EEEEEEEETTTTEECCSSCCCS-------------------S-------BCCEEECSSTT---CEEEE-ETTEEEEESST
T ss_pred ceEEEEEECCCCccccceecCc-------------------c-------cccceECCCCC---EEEEE-ECCeEEEEeCC
Confidence 689999999877542 11100 0 01112222332 23333 35677778777
Q ss_pred CcCceeeE-eecccCE-----------------EEEEECCCCCcEEEEEeCCC---------------------------
Q 046899 183 SIGARGKY-LGHEDTV-----------------EDVQFCPSSAQEFCSVGDDS--------------------------- 217 (407)
Q Consensus 183 ~~~~~~~~-~~~~~~v-----------------~~l~~~~~~~~~l~s~~~dg--------------------------- 217 (407)
+++..+.. .++...| .+++|+|+| +.|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 66654332 1222222 489999999 7788877542
Q ss_pred -------cEEEEEcCCCCCC---ce---eeecccCcceEEEEecCCCCCEEEEEeCC----CcEEEEe----CCCCCCCC
Q 046899 218 -------CLILWDARSGSTP---AV---KVEKAHNADIHCVDWNPHDVNLILTGSAD----NSIHMFD----RRKLTSDG 276 (407)
Q Consensus 218 -------~i~iwd~~~~~~~---~~---~~~~~~~~~v~~l~~~~~~~~~l~tg~~d----g~i~vwd----~~~~~~~~ 276 (407)
.|++||+.+++.. .+ ..+..|...+..++|+| |++++++.... ..|.+|| +.+
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~----- 291 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT----- 291 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS-----
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC-----
Confidence 7889999876510 00 12345788899999999 78777774433 2488899 766
Q ss_pred CCCceeee----cCCCCCEE-----EEEEcCCCCCEEE-EeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcch
Q 046899 277 VGSPIHKF----EGHSAAVL-----CVQWSPDKSSVFG-SSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDML 344 (407)
Q Consensus 277 ~~~~~~~~----~~h~~~v~-----~v~~~~~~~~ll~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 344 (407)
++....+ ..|...+. .++|+|+|+.++. ++..++ .|.+||+...+ ...+..+...+..+.++
T Consensus 292 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~---- 365 (719)
T 1z68_A 292 -WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV---- 365 (719)
T ss_dssp -EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE----
T ss_pred -CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE----
Confidence 4544444 46777776 8899999997654 344555 57777876644 33333333323222222
Q ss_pred hccccceeeeeEeeCccceeeeEEEe-----eeEEEeeccccccCChHHHHH-HHhhcccceeEeeccC
Q 046899 345 DIETKLLTSIGMHLIHGRLLVCLTMV-----KVLEIWRMIDLIYRPEEEVLA-ELDKFKSHIFGCDKSC 407 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~ 407 (407)
.+..|+..+.+ +.++||.+.........+++. .+.+|...+..++||+
T Consensus 366 ---------------d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 366 ---------------TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD 419 (719)
T ss_dssp ---------------CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred ---------------eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence 25556655554 688999886211000001111 1344666777777763
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=4.1e-17 Score=162.72 Aligned_cols=215 Identities=10% Similarity=0.110 Sum_probs=140.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc
Q 046899 88 RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN 167 (407)
Q Consensus 88 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (407)
.++|+| ++++++++ .|++|++||+.+++....+..+.... .....+..++ +|. .+
T Consensus 20 ~~~~s~-dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~-------------~~~~~~~~Sp-------Dg~---~l 74 (719)
T 1z68_A 20 FPNWIS-GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKS-------------VNASNYGLSP-------DRQ---FV 74 (719)
T ss_dssp CCEESS-SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHT-------------TTCSEEEECT-------TSS---EE
T ss_pred ccEECC-CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccc-------------cceeeEEECC-------CCC---eE
Confidence 678999 77766655 58999999999887554433221100 0001111111 221 23
Q ss_pred ccccC---------CCCCCCCCCCCcCce--eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-e
Q 046899 168 ASKSG---------GNGDKPLESPSIGAR--GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-E 235 (407)
Q Consensus 168 ~~~~~---------~~~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~ 235 (407)
++++. ++.+.+||+.+++.+ ..+ ...+..++|+|+| +.|+.+. ++.|++||+.++.. ... .
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~--~~l~~ 147 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPP--FQITF 147 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCC--EECCC
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCc--EEEec
Confidence 33322 578889998877652 222 2468899999999 6777775 78999999988762 221 1
Q ss_pred cccCcce-----------------EEEEecCCCCCEEEEEeCCC----------------------------------cE
Q 046899 236 KAHNADI-----------------HCVDWNPHDVNLILTGSADN----------------------------------SI 264 (407)
Q Consensus 236 ~~~~~~v-----------------~~l~~~~~~~~~l~tg~~dg----------------------------------~i 264 (407)
.++...+ .+++|+| |++.|++++.|. .|
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 2332222 4899999 999999887652 78
Q ss_pred EEEeCCCCCCCCCCCce--------eeecCCCCCEEEEEEcCCCCCEEEEeeCC----CeEEEEe----CCCCCccccc-
Q 046899 265 HMFDRRKLTSDGVGSPI--------HKFEGHSAAVLCVQWSPDKSSVFGSSAED----GILNIWD----HEKIGEKQDY- 327 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~--------~~~~~h~~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd----~~~~~~~~~~- 327 (407)
++||+.. ++.. ..+.+|...+.+++|+||++ ++++.... ..|.+|| +.+++....+
T Consensus 227 ~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 227 FIIDTTY------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp EEEESSC------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred EEEECCC------CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence 8999987 4432 22446888899999999976 55554322 2488999 8777666555
Q ss_pred ---ccCCCccc-----CCCCcCc
Q 046899 328 ---GELKYPII-----HPAYSSD 342 (407)
Q Consensus 328 ---~~~~~~v~-----~~~~s~d 342 (407)
..+...+. .+.||||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 300 HIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp EEEECSSSCSSSSSCCCCEECTT
T ss_pred cccccCCceEccccCCccEECCC
Confidence 35666666 7889888
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.67 E-value=1.8e-15 Score=136.13 Aligned_cols=241 Identities=14% Similarity=0.082 Sum_probs=155.0
Q ss_pred eeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCC------CceEEEEEeCCCCeEEEEee-----
Q 046899 39 SLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHP------GEVNRIRELPQNSKIVATHT----- 103 (407)
Q Consensus 39 ~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~tg~----- 103 (407)
...+.|.|+ +++...++.+.+|- ... ......+... ..+..++|+| ++++|++++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~ 105 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKID-----LVT----GETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRL 105 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEE-----TTT----CCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEE-----CCC----CCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccc
Confidence 345677664 34455566777771 111 1122222222 2678899999 777777775
Q ss_pred -------CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCC
Q 046899 104 -------DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGD 176 (407)
Q Consensus 104 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (407)
.++.|.+||+.+++....+.... . +....+.+.+. .++.+ ++.+
T Consensus 106 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----------------~-------~~~~~~s~dg~---~l~~~--~~~i 156 (337)
T 1pby_B 106 ELTHFEVQPTRVALYDAETLSRRKAFEAPR-----------------Q-------ITMLAWARDGS---KLYGL--GRDL 156 (337)
T ss_dssp CSSCEEECCCEEEEEETTTTEEEEEEECCS-----------------S-------CCCEEECTTSS---CEEEE--SSSE
T ss_pred ccccccccCceEEEEECCCCcEEEEEeCCC-----------------C-------cceeEECCCCC---EEEEe--CCeE
Confidence 57899999998664433322110 0 11111222222 12222 4678
Q ss_pred CCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC-----------------------cEEEEEcCCCCCCcee
Q 046899 177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS-----------------------CLILWDARSGSTPAVK 233 (407)
Q Consensus 177 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~~~ 233 (407)
.+||..+++.+..+..+.. ...+.|+|++..+++++..++ .|.+||+.+++.. ..
T Consensus 157 ~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~ 234 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR 234 (337)
T ss_dssp EEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE
T ss_pred EEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee
Confidence 8888888877666654331 112378888843333333333 4689999988732 33
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
....+...+.+++|+| ++++++++ ++.|.+||+.+ ++.+..+..+ ..+.+++|+|++++|+ +++.++.|
T Consensus 235 ~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~s~dg~~l~-~~~~~~~i 303 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEK------NASIKRVPLP-HSYYSVNVSTDGSTVW-LGGALGDL 303 (337)
T ss_dssp EEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTT------TEEEEEEECS-SCCCEEEECTTSCEEE-EESBSSEE
T ss_pred ecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCC------CcCcceecCC-CceeeEEECCCCCEEE-EEcCCCcE
Confidence 4455667788999999 88988888 79999999988 7777777643 4678999999999775 56779999
Q ss_pred EEEeCCCCCcccccccCC
Q 046899 314 NIWDHEKIGEKQDYGELK 331 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~ 331 (407)
++||+.+++.+..+....
T Consensus 304 ~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 304 AAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEETTTCCEEEEEECGG
T ss_pred EEEECcCCcEEEEEEcCC
Confidence 999999988777765543
No 158
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=5.1e-15 Score=133.21 Aligned_cols=263 Identities=12% Similarity=0.053 Sum_probs=169.3
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCC---CCCcccc
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP---GSAKSTA 159 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~---~~~~~~~ 159 (407)
-+.+.+|++.| +++++++...++.+.+++...... +..+.. .+..++.|.+||..++........ .....++
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia 97 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFV---YQQRGL-GPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS 97 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSC---BSCGGG-CSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCccee---eccccc-ccccCCcEEEEECCCCeEEeccCCCccCCceEEE
Confidence 46799999999 789999988886655544432211 111111 011256777777764432211110 1111122
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcC-ceeeE---------eecccCEEEEEECC-CCCcEEEEEe-CCCcEEEEEcCCC
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIG-ARGKY---------LGHEDTVEDVQFCP-SSAQEFCSVG-DDSCLILWDARSG 227 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~---------~~~~~~v~~l~~~~-~~~~~l~s~~-~dg~i~iwd~~~~ 227 (407)
.......+++...++.|.+|+..... .+..+ .++......|+++| ++ .++++.+ .++.|++||. ++
T Consensus 98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g 175 (329)
T 3fvz_A 98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SG 175 (329)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TS
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CC
Confidence 22233345666677788888875432 34444 23344689999999 66 7888886 6899999994 45
Q ss_pred CCCceeeecc----------cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--CCCCCEEEEE
Q 046899 228 STPAVKVEKA----------HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GHSAAVLCVQ 295 (407)
Q Consensus 228 ~~~~~~~~~~----------~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~ 295 (407)
. ....+.. +-.....|+++|..++++++...++.|++||..+ ++.+..+. .+...+.+++
T Consensus 176 ~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~------G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 176 K--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT------KEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp C--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT------CCEEEEECCTTTTTCEEEEE
T ss_pred C--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC------CcEEEEEeccccCCCcceee
Confidence 5 3444322 2234789999993378888888899999999987 78888774 4567889999
Q ss_pred EcC------CCCCEEEEeeCCCeEEEEeCCCCCcccccc---cCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899 296 WSP------DKSSVFGSSAEDGILNIWDHEKIGEKQDYG---ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC 366 (407)
Q Consensus 296 ~~~------~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~ 366 (407)
|+| ++. ++++...+..|++||+.+++.+..+. .+-..+.++++++| +..+++
T Consensus 248 ~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d------------------G~lyva 308 (329)
T 3fvz_A 248 YIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED------------------GTVYIG 308 (329)
T ss_dssp EETTEEEEEECC-CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT------------------SEEEEE
T ss_pred ecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC------------------CCEEEE
Confidence 999 333 22233445689999999988777663 33334455666665 666777
Q ss_pred EEEeeeEEEeecc
Q 046899 367 LTMVKVLEIWRMI 379 (407)
Q Consensus 367 ~~~d~~i~iwd~~ 379 (407)
...+++|++|++.
T Consensus 309 d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 309 DAHTNTVWKFTLT 321 (329)
T ss_dssp ESSSCCEEEEEEE
T ss_pred ECCCCEEEEEeCC
Confidence 7778899999986
No 159
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.65 E-value=2.3e-14 Score=129.84 Aligned_cols=218 Identities=8% Similarity=0.009 Sum_probs=135.6
Q ss_pred eeCCCceEEEEEeCCCCeEEEEee-CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccc-cc--ccccCCCCC
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHT-DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDH-VS--ALAAEPGSA 155 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~-~~--~~~~~~~~~ 155 (407)
..|...+..++|+| ++++|++++ .++.|++|++........+... ..... .. .....+..+
T Consensus 82 ~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~--------------~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 82 VAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTV--------------QHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp EEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEE--------------ECCCCCSSTTCSSCCEEEE
T ss_pred ecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeeccee--------------ecCCCCCCccccCCCceEE
Confidence 45788899999999 777777776 7889999999643221111100 00000 00 000001111
Q ss_pred cccccCCCCCccccccCCCCCCCCCCC-CcCcee--eEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCC
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESP-SIGARG--KYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GST 229 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~--~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~ 229 (407)
.+.+.|. .+++...++.+.+|++. .++... .+.. .......++|+|+|..+++++..++.|.+|++.. +..
T Consensus 147 ~~spdg~---l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 223 (347)
T 3hfq_A 147 DLTPDNR---LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF 223 (347)
T ss_dssp EECTTSC---EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EECCCCc---EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence 2222332 34555567788889887 443222 1222 2336788999999944566667789999999985 331
Q ss_pred CceeeecccC------cceEEEEecCCCCCEE-EEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899 230 PAVKVEKAHN------ADIHCVDWNPHDVNLI-LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 230 ~~~~~~~~~~------~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 302 (407)
.......... ..+..++|+| ++++| ++...++.|.+||+.... ..+.+..+..+...+..++|+|+|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g---~~~~~~~~~~~~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADG---HLTLIQQISTEGDFPRDFDLDPTEAF 299 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGGG---CEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred EEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCCC---cEEEeEEEecCCCCcCeEEECCCCCE
Confidence 1122222222 3588899999 88876 556668999999997311 03556666666777899999999998
Q ss_pred EEEEeeCCCeEEEEeCC
Q 046899 303 VFGSSAEDGILNIWDHE 319 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~ 319 (407)
|++++..++.|.+|++.
T Consensus 300 l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 300 VVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEe
Confidence 87566667999999543
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.64 E-value=2.6e-15 Score=150.03 Aligned_cols=147 Identities=12% Similarity=0.185 Sum_probs=103.0
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG 162 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 162 (407)
......++|+| ++++|+++ ||+|++||+.++++...+..+...
T Consensus 16 ~~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---------------------------------- 58 (740)
T 4a5s_A 16 RLKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---------------------------------- 58 (740)
T ss_dssp CCCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT----------------------------------
T ss_pred cccccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhh----------------------------------
Confidence 34466889999 88899887 899999999987654333222110
Q ss_pred CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---------CcEEEEEcCCCCCCcee
Q 046899 163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---------SCLILWDARSGSTPAVK 233 (407)
Q Consensus 163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~ 233 (407)
.+......++|+|+| +.++.++.+ +.+.+||+.+++ ..
T Consensus 59 -----------------------------~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~~ 105 (740)
T 4a5s_A 59 -----------------------------EFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LI 105 (740)
T ss_dssp -----------------------------TCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---EC
T ss_pred -----------------------------hhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCc---EE
Confidence 011123468899999 777777765 567799999887 33
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCE-----------------EEEE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAV-----------------LCVQ 295 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v-----------------~~v~ 295 (407)
.+..+...+...+|+| ||+.||.+. ++.|++||+.. ++..+ +..++...+ ..+.
T Consensus 106 ~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~------~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 106 TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCC------CceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence 4566778899999999 999998875 78999999987 44332 222333222 3589
Q ss_pred EcCCCCCEEEEee
Q 046899 296 WSPDKSSVFGSSA 308 (407)
Q Consensus 296 ~~~~~~~ll~s~~ 308 (407)
|||||++| |.++
T Consensus 178 wSpDg~~l-a~~~ 189 (740)
T 4a5s_A 178 WSPNGTFL-AYAQ 189 (740)
T ss_dssp ECTTSSEE-EEEE
T ss_pred ECCCCCEE-EEEE
Confidence 99999976 4554
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.64 E-value=2.1e-14 Score=129.79 Aligned_cols=236 Identities=10% Similarity=0.066 Sum_probs=146.1
Q ss_pred ccccCccceEEEEeecccCcccCCcceeeEEEeeCCC--ceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcCCCCcccccC
Q 046899 48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPG--EVNRIRELPQNSK-IVATHTDSPDVLIWDVEAQPNRHAVLG 124 (407)
Q Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~ 124 (407)
++++..++.+.+|-. . ..+....+.... .+..++|+| +++ +++++..++.|.+||+.+++....+..
T Consensus 14 ~v~~~~~~~v~~~d~-----~----~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 14 MIVTNYPNNLHVVDV-----A----SDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp EEEEETTTEEEEEET-----T----TTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred EEEeCCCCeEEEEEC-----C----CCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 456666778888811 1 112233333333 688999999 655 556667789999999987755433321
Q ss_pred cCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccC------------CCCCCCCCCCCcCc---eee
Q 046899 125 AADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSG------------GNGDKPLESPSIGA---RGK 189 (407)
Q Consensus 125 ~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~i~d~~~~~~---~~~ 189 (407)
.... . .....+....+.+.|. .++++.. ++.+.+||+.+++. +..
T Consensus 84 ~~~~------~-----------~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 84 SSVP------G-----------EVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp CCST------T-----------EEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred cccc------c-----------cccccccceEECCCCC---EEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 1100 0 0000011111122221 1222222 37788888877443 333
Q ss_pred EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-------------------------------
Q 046899 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH------------------------------- 238 (407)
Q Consensus 190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------------- 238 (407)
+. +...+.+++|+|++ ++ ++++ +.|.+||+.+++ ....+..+
T Consensus 144 ~~-~~~~~~~~~~s~dg-~l-~~~~--~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 144 FP-MPRQVYLMRAADDG-SL-YVAG--PDIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp EE-CCSSCCCEEECTTS-CE-EEES--SSEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred cc-CCCcccceeECCCC-cE-EEcc--CcEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 33 34468899999999 54 4444 349999998876 23222211
Q ss_pred -------------------------------------CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899 239 -------------------------------------NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 239 -------------------------------------~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~ 281 (407)
...+.+++|+|.++++++++ ++.|.+||+++ ++.+
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~------~~~~ 288 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ------RKLI 288 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT------TEEE
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc------CeEE
Confidence 11344566777456777777 88999999998 7777
Q ss_pred eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL 330 (407)
Q Consensus 282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 330 (407)
..+.. ...+.+++|+|++++|+ +++.++.|++||+.+++.+..+...
T Consensus 289 ~~~~~-~~~~~~~~~s~dg~~l~-~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 289 KAANL-DHTYYCVAFDKKGDKLY-LGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEC-SSCCCEEEECSSSSCEE-EESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEcC-CCCccceEECCCCCEEE-EecCCCeEEEEeccccceeeeeecC
Confidence 77764 34578999999999886 5677899999999998877766543
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.63 E-value=5.5e-15 Score=135.96 Aligned_cols=264 Identities=11% Similarity=0.043 Sum_probs=160.7
Q ss_pred eCCCceEE-----EEEeCCCCeEEEEeeC-CCc--EEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899 81 IHPGEVNR-----IRELPQNSKIVATHTD-SPD--VLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152 (407)
Q Consensus 81 ~h~~~v~~-----l~~~~~~~~~l~tg~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~ 152 (407)
.|...... .+|+| +++.|+.++. +|. |.+||+.+++.......+.....
T Consensus 28 ~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~---------------------- 84 (388)
T 3pe7_A 28 PPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTF---------------------- 84 (388)
T ss_dssp CTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSS----------------------
T ss_pred CCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCcc----------------------
Confidence 45555555 78999 8888888776 674 77788877654443322211100
Q ss_pred CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEE--ECCCCCcEEEEE-----------------
Q 046899 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQ--FCPSSAQEFCSV----------------- 213 (407)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~--~~~~~~~~l~s~----------------- 213 (407)
...+.+.| ..++....++.+.+||+.+++....+..+...+.... ++|++ .+++..
T Consensus 85 -~~~~spdg---~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 -GGFLSPDD---DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp -SCEECTTS---SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHH
T ss_pred -ceEEcCCC---CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhh
Confidence 01111122 2345555567788889888887766666666554444 48888 566532
Q ss_pred -----eCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCCcee
Q 046899 214 -----GDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------NSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 214 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------g~i~vwd~~~~~~~~~~~~~~ 282 (407)
..+..|.+||+.+++ ...+..+...+..+.|+|.+++.|+....+ ..|.++|... ....
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~~~~ 229 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGE---STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-------TNMR 229 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-------CCCE
T ss_pred hhhccCCcceEEEEECCCCc---eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-------CceE
Confidence 245789999999876 344446677789999999456666665543 3788888765 3344
Q ss_pred eecCCC--CCEEEEEEcCCCCCEEEEeeCCC----eEEEEeCCCCCcc--cccccCC---CcccCCCCcCcchhccccce
Q 046899 283 KFEGHS--AAVLCVQWSPDKSSVFGSSAEDG----ILNIWDHEKIGEK--QDYGELK---YPIIHPAYSSDMLDIETKLL 351 (407)
Q Consensus 283 ~~~~h~--~~v~~v~~~~~~~~ll~s~~~d~----~i~vwd~~~~~~~--~~~~~~~---~~v~~~~~s~d~~~~~~~~~ 351 (407)
.+..+. ..+..++|+|+|+.|+..+..++ .|.+||+.+++.. ..+.+.. .......||||
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd--------- 300 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD--------- 300 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE---------
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC---------
Confidence 454444 35888999999998744443322 3999999987632 2222210 01233467777
Q ss_pred eeeeEeeCccceeeeE---------EEeeeEEEeeccccccCChHHHHHHHhhccc-----------ceeEeeccC
Q 046899 352 TSIGMHLIHGRLLVCL---------TMVKVLEIWRMIDLIYRPEEEVLAELDKFKS-----------HIFGCDKSC 407 (407)
Q Consensus 352 ~~~~~~~~~~~~i~~~---------~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~s~ 407 (407)
+..|+.. ..+..|++||+. +++. ..+..|.. .+.+++||+
T Consensus 301 ---------g~~l~~~~~~~~~~~~~~~~~i~~~d~~------~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~sp 360 (388)
T 3pe7_A 301 ---------GSDAPVDVQDDSGYKIENDPFLYVFNMK------NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTP 360 (388)
T ss_dssp ---------ECCC------------CCCCEEEEEETT------TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred ---------CCcceeEeeeccccccCCCCEEEEEecc------CCce-EEeccccCcccccccccccCCCCccCCC
Confidence 5555533 334589999997 3332 34555555 467777775
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=3.4e-14 Score=125.02 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=156.5
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
+|-..+.++++.+ +++++++...++.|.+||.. +.....+...... .+. ...+..+.+ .
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~----~~~-------------~~~p~~i~~--~ 85 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR----DSQ-------------LLYPNRVAV--V 85 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS----TTC-------------BSSEEEEEE--E
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCC----ccc-------------ccCceEEEE--E
Confidence 3556789999998 78888888889999999976 3322222110000 000 000000000 0
Q ss_pred CCCCCcccccc-CCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--
Q 046899 161 GGANSKNASKS-GGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-- 236 (407)
Q Consensus 161 ~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 236 (407)
.......++.. .++.+.+|| ..++.+..+.. +...+.+++++|++ +++++...++.|.+||.. ++ ....+.
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~ 160 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GN--VLHKFGCS 160 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEEECT
T ss_pred cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CC--EEEEeCCC
Confidence 01111222222 266788888 55665555532 34578999999998 788888888999999964 33 233332
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--CCCEEEEEEcCCCCCEEEEeeCCC-eE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--SAAVLCVQWSPDKSSVFGSSAEDG-IL 313 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~ll~s~~~d~-~i 313 (407)
.+...+.+++++| +++++++...++.|++||.. ++.+..+..+ ...+..++++++|. ++++...++ .|
T Consensus 161 ~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i 231 (286)
T 1q7f_A 161 KHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNL 231 (286)
T ss_dssp TTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEE
T ss_pred CccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-------CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEE
Confidence 3445689999999 88888887889999999975 4666666543 36789999999997 666777775 99
Q ss_pred EEEeCCCCCcccccccCCC--cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 314 NIWDHEKIGEKQDYGELKY--PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+||.. ++.+..+..+.. .+.+++++++ +..+++ +.+++|++|++.
T Consensus 232 ~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~------------------g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 232 TIFTQD-GQLISALESKVKHAQCFDVALMDD------------------GSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp EEECTT-SCEEEEEEESSCCSCEEEEEEETT------------------TEEEEE-ETTTEEEEEECS
T ss_pred EEECCC-CCEEEEEcccCCCCcceeEEECCC------------------CcEEEE-CCCCeEEEEEcc
Confidence 999964 455555543322 1234444444 555555 568899999986
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.62 E-value=9.4e-15 Score=144.28 Aligned_cols=276 Identities=12% Similarity=0.040 Sum_probs=165.0
Q ss_pred eeCCCceEEEEEeCCCCeEEEEe--eCCCcEEEEeCcCCCCcccccCcCCCCCCC----CCcEEEEeccccccccccCCC
Q 046899 80 IIHPGEVNRIRELPQNSKIVATH--TDSPDVLIWDVEAQPNRHAVLGAADSHPDL----DQSVVLWSIQDHVSALAAEPG 153 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----d~~i~~w~~~~~~~~~~~~~~ 153 (407)
.+|...+..+++++ +.-++++. +.++...||....+.....+..+...+... .+....|.. +
T Consensus 20 ~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------S-- 87 (662)
T 3azo_A 20 ASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVP---------R-- 87 (662)
T ss_dssp HHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEEC---------C--
T ss_pred hhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeee---------e--
Confidence 36899999999998 66667776 568899999964433333333222110000 000000110 0
Q ss_pred CCcccccCCCCCc-ccccc-CCCCCCCCCCC--CcCceeeEee-----cccCEEEEEECCCCCcEEEEEeCC--------
Q 046899 154 SAKSTASGGANSK-NASKS-GGNGDKPLESP--SIGARGKYLG-----HEDTVEDVQFCPSSAQEFCSVGDD-------- 216 (407)
Q Consensus 154 ~~~~~~~~~~~~~-~~~~~-~~~~i~i~d~~--~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~s~~~d-------- 216 (407)
++| .. ++... .+..+.+++.. .......+.. |...+..++|+|+| +.|+.++.+
T Consensus 88 -----PDg---~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 88 -----PAG---GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp -----SSS---SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTC
T ss_pred -----cCC---CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCC
Confidence 111 12 22221 13334444443 2033444444 56788999999999 778777766
Q ss_pred --CcEEEEEcCC------CCCCceeeec-ccCcceEEEEecCCCCCEEEEEeCC--------CcEEEEeCC-CCCCCCCC
Q 046899 217 --SCLILWDARS------GSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSAD--------NSIHMFDRR-KLTSDGVG 278 (407)
Q Consensus 217 --g~i~iwd~~~------~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~d--------g~i~vwd~~-~~~~~~~~ 278 (407)
..|.+||+.+ +. ...+. .+...+..++|+| |++.|+.++.+ ..|++||+. + +
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~------g 228 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTED------G 228 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTT------S
T ss_pred ceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCC------C
Confidence 5899999987 44 33444 5566788899999 99999877755 379999998 4 4
Q ss_pred ---CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceee
Q 046899 279 ---SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS 353 (407)
Q Consensus 279 ---~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 353 (407)
+.......|...+..++|+|||+ +++++..++ .|.+||+.+++.. .+..+...+....|+++. ..
T Consensus 229 ~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~--------~~ 298 (662)
T 3azo_A 229 RFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGM--------RW 298 (662)
T ss_dssp CEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTC--------CS
T ss_pred cccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccC--------ce
Confidence 33333344578899999999999 667888888 6777776554433 333334444455555541 11
Q ss_pred eeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEe
Q 046899 354 IGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403 (407)
Q Consensus 354 ~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~ 403 (407)
+.....+..+++++. +.++||.+... .++ +..+..|.+.+..+
T Consensus 299 -~~~~~~~~~~~~~~~-~~~~l~~~d~~----~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 299 -FAPLANGLIAVVHGK-GAAVLGILDPE----SGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp -EEECTTSCEEEEEBS-SSCEEEEEETT----TTE-EEECCSSCCEEEEE
T ss_pred -EeEeCCCEEEEEEEc-CccEEEEEECC----CCc-EEEecCCCCeEEEE
Confidence 222222556777777 89999955310 222 44556666666665
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.62 E-value=2e-15 Score=146.72 Aligned_cols=229 Identities=12% Similarity=0.022 Sum_probs=149.4
Q ss_pred eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccc-ccccCC-CCCcccccCCCCCccccccC--
Q 046899 97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS-ALAAEP-GSAKSTASGGANSKNASKSG-- 172 (407)
Q Consensus 97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 172 (407)
-+.++.+.||...++--.. ++++.+|++.++.. .+..+. ..+........ ..++++..
T Consensus 24 ~~~~~~~~DG~~la~~s~~-----------------~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~ 85 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFS-----------------EGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSK 85 (582)
T ss_dssp EEEEEEEETTTEEEEEEEE-----------------TTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECST
T ss_pred hheeecCCCCCeEEEEEcc-----------------CCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCC
Confidence 3455566677655553211 67899999865532 222222 12222222222 23333322
Q ss_pred -CCCCCCCCCCC---cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec
Q 046899 173 -GNGDKPLESPS---IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248 (407)
Q Consensus 173 -~~~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~ 248 (407)
+...++|.... +... .+.. ...+...+|+|++..++++.+.++.+.+||+.+++ .... ..+.. .+++|+
T Consensus 86 g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--~~~l-~~~~~--~~~~~s 158 (582)
T 3o4h_A 86 GAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG--LREL-ARLPG--FGFVSD 158 (582)
T ss_dssp TSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE--EEEE-EEESS--CEEEEE
T ss_pred CCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc--EEEe-ecCCC--ceEEEC
Confidence 33334543322 2222 2222 22344567777774444454555556699998876 2332 23333 789999
Q ss_pred CCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCC
Q 046899 249 PHDVNLILTGSAD----NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIG 322 (407)
Q Consensus 249 ~~~~~~l~tg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~ 322 (407)
| ||+++++++.+ +.|++||+.+ ++. ..+..|...+..++|+|||+.| +++..++ .|++||+.+++
T Consensus 159 p-DG~~la~~~~~~~~~~~i~~~d~~~------g~~-~~l~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 159 I-RGDLIAGLGFFGGGRVSLFTSNLSS------GGL-RVFDSGEGSFSSASISPGMKVT-AGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp E-ETTEEEEEEEEETTEEEEEEEETTT------CCC-EEECCSSCEEEEEEECTTSCEE-EEEECSSCEEEEEECTTTCC
T ss_pred C-CCCEEEEEEEcCCCCeEEEEEcCCC------CCc-eEeecCCCccccceECCCCCEE-EEccCCCeeEEEEEcCCCCc
Confidence 9 99999988777 7899999987 444 4777888999999999999976 5888888 89999999877
Q ss_pred cccccccCCCcccCCC--------CcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899 323 EKQDYGELKYPIIHPA--------YSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM 378 (407)
Q Consensus 323 ~~~~~~~~~~~v~~~~--------~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~ 378 (407)
.. .+..+...+..+. |||| +..+++++.+++++||++
T Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~spd------------------g~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 VE-DLELPSKDFSSYRPTAITWLGYLPD------------------GRLAVVARREGRSAVFID 274 (582)
T ss_dssp EE-ECCCSCSHHHHHCCSEEEEEEECTT------------------SCEEEEEEETTEEEEEET
T ss_pred EE-EccCCCcChhhhhhccccceeEcCC------------------CcEEEEEEcCCcEEEEEE
Confidence 66 6667777777788 8888 777788999999999998
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.59 E-value=4.8e-13 Score=121.83 Aligned_cols=216 Identities=9% Similarity=0.091 Sum_probs=126.6
Q ss_pred CCCceEEEEEeCCCCeEEEEe-eCCCcEEEEeCcCCCCcccccC---cCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 82 HPGEVNRIRELPQNSKIVATH-TDSPDVLIWDVEAQPNRHAVLG---AADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
+......+++ ++++|+++ ..++.|.+|++........+.. +....+. .......++..+.+
T Consensus 98 ~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 98 MGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD------------KERQTMPHLHCVRI 162 (361)
T ss_dssp SSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC------------TTTCSSCCEEEEEE
T ss_pred CCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC------------ccccCCCcceEEEE
Confidence 5567777876 44445444 4688999999976443322211 0000000 00000001111222
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCc------e-------eeEeecccCEEEEEECCCCCcEEEEEe-CCCcEEEEE
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGA------R-------GKYLGHEDTVEDVQFCPSSAQEFCSVG-DDSCLILWD 223 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~------~-------~~~~~~~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd 223 (407)
.+.|.. .+++...++.+.+|++..... + .....+......++|+|++ +++++++ .++.|.+||
T Consensus 163 spdg~~--l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 163 TPDGKY--LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFR 239 (361)
T ss_dssp CTTSSE--EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEE
T ss_pred CCCCCE--EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEE
Confidence 222321 233344567788886654331 1 1122345567899999999 5555555 689999999
Q ss_pred cCCCCCCceeee---cccCcceEEEEecCCCCCEEEEEeCC--CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899 224 ARSGSTPAVKVE---KAHNADIHCVDWNPHDVNLILTGSAD--NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP 298 (407)
Q Consensus 224 ~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~tg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 298 (407)
+.++........ ..+......++|+| ++++|+++..+ +.|.+|++.... +..+.+..+.. ...+.+++|+|
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~--g~~~~~~~~~~-g~~~~~~~~sp 315 (361)
T 3scy_A 240 YADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETN--GTLTKVGYQLT-GIHPRNFIITP 315 (361)
T ss_dssp EETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTT--CCEEEEEEEEC-SSCCCEEEECT
T ss_pred ecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCC--CcEEEeeEecC-CCCCceEEECC
Confidence 986652112222 22334568999999 88988666654 899999996311 00224555554 55788999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCC
Q 046899 299 DKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 299 ~~~~ll~s~~~d~~i~vwd~~ 319 (407)
+|++|++++..++.|.+|++.
T Consensus 316 dg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 316 NGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp TSCEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEEE
Confidence 999887666578999996544
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.57 E-value=1.2e-13 Score=126.92 Aligned_cols=256 Identities=10% Similarity=0.029 Sum_probs=148.7
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CCCCCcEEEE-eccccccccccCCC
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PDLDQSVVLW-SIQDHVSALAAEPG 153 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~d~~i~~w-~~~~~~~~~~~~~~ 153 (407)
+|...+..+.|+| +++.|+.++.++.|.+||+.+++.......+.... ...|+...+. .....
T Consensus 78 ~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~--------- 147 (388)
T 3pe7_A 78 GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRE--------- 147 (388)
T ss_dssp SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGG---------
T ss_pred CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCc---------
Confidence 3444555778999 88899999999999999999876544332221100 0001111110 00000
Q ss_pred CCcccccCCCC--CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCC------CcEEEEEc
Q 046899 154 SAKSTASGGAN--SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDD------SCLILWDA 224 (407)
Q Consensus 154 ~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~ 224 (407)
...+..... ........+..+.+||+.+++. ..+..+...+..++|+| ++ ..|+.++.+ ..|.++|+
T Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 148 --DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp --GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEET
T ss_pred --ccccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeC
Confidence 000000000 0011233446778888888764 44445677899999999 88 667666653 37888887
Q ss_pred CCCCCCceeeecccC--cceEEEEecCCCCCEEEEEeC-CC----cEEEEeCCCCCCCCCCC--ceeeecCCCCC---EE
Q 046899 225 RSGSTPAVKVEKAHN--ADIHCVDWNPHDVNLILTGSA-DN----SIHMFDRRKLTSDGVGS--PIHKFEGHSAA---VL 292 (407)
Q Consensus 225 ~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~l~tg~~-dg----~i~vwd~~~~~~~~~~~--~~~~~~~h~~~---v~ 292 (407)
..+. ...+..+. ..+..+.|+| +++.|+..+. ++ .|++||+.+ ++ .+..+.++... ..
T Consensus 224 ~~~~---~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~------g~~~~l~~~~~~~~~~~~~~ 293 (388)
T 3pe7_A 224 DGTN---MRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPET------LENRQLTSMPACSHLMSNYD 293 (388)
T ss_dssp TSCC---CEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTT------CCEEEEEEECCEEEEEECTT
T ss_pred CCCc---eEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCC------CceEEEEcCCCceeeeecCC
Confidence 6555 23333333 3577899999 8876654333 22 399999987 44 33344331110 11
Q ss_pred EEEEcCCCCCEEEEe--------eCCCeEEEEeCCCCCcccccccCCC-----------cccCCCCcCcchhccccceee
Q 046899 293 CVQWSPDKSSVFGSS--------AEDGILNIWDHEKIGEKQDYGELKY-----------PIIHPAYSSDMLDIETKLLTS 353 (407)
Q Consensus 293 ~v~~~~~~~~ll~s~--------~~d~~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~s~d~~~~~~~~~~~ 353 (407)
.++|+|+|++|+++. ..+..|.+||+.+++ ...+..+.. .+..++||||
T Consensus 294 ~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spD----------- 361 (388)
T 3pe7_A 294 GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPD----------- 361 (388)
T ss_dssp SSEEEEEECCC------------CCCCEEEEEETTTTE-EEEEEECCCCCCCBTTBSSTTCCCCEECTT-----------
T ss_pred CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc-eEEeccccCcccccccccccCCCCccCCCC-----------
Confidence 237999999875443 457799999998854 344444443 4677889988
Q ss_pred eeEeeCccceeeeEE-EeeeEEEeecc
Q 046899 354 IGMHLIHGRLLVCLT-MVKVLEIWRMI 379 (407)
Q Consensus 354 ~~~~~~~~~~i~~~~-~d~~i~iwd~~ 379 (407)
+..|+..+ .++...||.+.
T Consensus 362 -------g~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 362 -------DKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -------SSEEEEEECTTSSCEEEEEE
T ss_pred -------CCEEEEEecCCCceeEEEEE
Confidence 66666554 35666666554
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.52 E-value=4.3e-13 Score=134.05 Aligned_cols=162 Identities=9% Similarity=0.110 Sum_probs=104.3
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce-----------------EEEEecCCCCCE
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI-----------------HCVDWNPHDVNL 254 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------------~~l~~~~~~~~~ 254 (407)
.|...+...+|+|+| +.||.+. |+.|.+||+.++.. ...+..++...+ ..+.|+| |++.
T Consensus 109 ~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~-~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~ 184 (740)
T 4a5s_A 109 RIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTF 184 (740)
T ss_dssp CCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSE
T ss_pred cCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCce-EEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCE
Confidence 355678999999999 6777774 68999999987762 122222332222 3589999 9999
Q ss_pred EEEEeCCC------------------------------------cEEEEeCCC---CCCCCCCCceeeec------CCCC
Q 046899 255 ILTGSADN------------------------------------SIHMFDRRK---LTSDGVGSPIHKFE------GHSA 289 (407)
Q Consensus 255 l~tg~~dg------------------------------------~i~vwd~~~---~~~~~~~~~~~~~~------~h~~ 289 (407)
||.++.|. .|++||+.+ .. ......+. +|..
T Consensus 185 la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~----~~~~~~l~~~~~~~~~~~ 260 (740)
T 4a5s_A 185 LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT----NATSIQITAPASMLIGDH 260 (740)
T ss_dssp EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS----CCCEEEECCCHHHHTSCE
T ss_pred EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC----cceEEEecCCccCCCCCe
Confidence 98875432 466777764 21 00233343 3777
Q ss_pred CEEEEEEcCCCCCEEEEee---CCCeEEEEeCCCCC----c--cccc--ccCCCccc-----CCCCcCcchhccccceee
Q 046899 290 AVLCVQWSPDKSSVFGSSA---EDGILNIWDHEKIG----E--KQDY--GELKYPII-----HPAYSSDMLDIETKLLTS 353 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~s~~---~d~~i~vwd~~~~~----~--~~~~--~~~~~~v~-----~~~~s~d~~~~~~~~~~~ 353 (407)
.+..++|+|||+.++.... .+..|.+||+.+++ + ...+ ..+...+. .+.||||
T Consensus 261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD----------- 329 (740)
T 4a5s_A 261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD----------- 329 (740)
T ss_dssp EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT-----------
T ss_pred EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC-----------
Confidence 8999999999985433322 23479999999876 2 2222 34555544 6788888
Q ss_pred eeEeeCccceee-eEEEe---eeEEEeecc
Q 046899 354 IGMHLIHGRLLV-CLTMV---KVLEIWRMI 379 (407)
Q Consensus 354 ~~~~~~~~~~i~-~~~~d---~~i~iwd~~ 379 (407)
+..|+ ..+.. ..|++||..
T Consensus 330 -------G~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 330 -------GNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp -------SSEEEEEEECTTSCEEEEEEETT
T ss_pred -------CCEEEEEEEcCCCceEEEEEECC
Confidence 55555 44432 378888875
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=2e-13 Score=124.29 Aligned_cols=263 Identities=9% Similarity=0.006 Sum_probs=165.6
Q ss_pred EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899 88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
.++|+| ++++|+++. .++.|.+||..+.+....+...... ......+....+
T Consensus 54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-----------------~~~g~~p~~i~~ 115 (361)
T 2oiz_A 54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-----------------VQGLNYDGLFRQ 115 (361)
T ss_dssp EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-----------------CCBCCCGGGEEE
T ss_pred ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-----------------cccCCCcceEEE
Confidence 899999 787777775 3567999999876655443221000 000001122222
Q ss_pred cccCCCCCcccccc--CCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-
Q 046899 158 TASGGANSKNASKS--GGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK- 233 (407)
Q Consensus 158 ~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 233 (407)
.+.|+ .+..+. .++.+.+||..+++.+.. +. .. ....+.+.|.+...+++.+.||.+.+|++..... ...
T Consensus 116 spdg~---~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~~ 189 (361)
T 2oiz_A 116 TTDGK---FIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK-VASQ 189 (361)
T ss_dssp CTTSS---EEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS-EEEE
T ss_pred CCCCC---EEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc-Eeee
Confidence 23332 232222 257889999998877666 43 22 2233567787767888999999999999875331 221
Q ss_pred -----eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC------C----CCEEEEEEcC
Q 046899 234 -----VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH------S----AAVLCVQWSP 298 (407)
Q Consensus 234 -----~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h------~----~~v~~v~~~~ 298 (407)
.+.....++ .+.++| ++..++..+.++.|.++|+.... ......+... . .....++|+|
T Consensus 190 ~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 190 SRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDE----VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp EECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSS----CEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred ccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCC----ceecccccccCccccccccccCCeeEEEEec
Confidence 111122222 333456 56677777789999999987521 1122222110 0 1112378999
Q ss_pred CCCCEEEEee----------CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE
Q 046899 299 DKSSVFGSSA----------EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT 368 (407)
Q Consensus 299 ~~~~ll~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 368 (407)
++.+++++.. ..+.|.+||+.+.+.+.++..+. +.+++|+|| +.++++++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spd------------------g~~l~v~n 323 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQ------------------RNLMLTLD 323 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETT------------------TTEEEEEC
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCC------------------CCEEEEeC
Confidence 9998886654 13589999999999888888766 788999998 77777666
Q ss_pred EeeeEEEeeccccccCChH--HHHHHHhhcccceeEeeccC
Q 046899 369 MVKVLEIWRMIDLIYRPEE--EVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 369 ~d~~i~iwd~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~ 407 (407)
. ++|.|||.. ++ ++++.+.++-.....++|+|
T Consensus 324 ~-~~v~v~D~~------t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 324 G-GNVNVYDIS------QPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp S-SCEEEEECS------SSSCEEEEEETTSCSSEEEEEECC
T ss_pred C-CeEEEEECC------CCcceeeEEeccCCCCcEEEEecC
Confidence 5 999999998 67 77777655556667777764
No 170
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=3.4e-12 Score=111.06 Aligned_cols=238 Identities=8% Similarity=-0.038 Sum_probs=144.0
Q ss_pred ceEEEEEeCCCCeEEE-EeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 85 EVNRIRELPQNSKIVA-THTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
...++++.+ ++++++ +...++.|.+||..+............ .+..+.+...+
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------~p~~i~~~~~g-- 78 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY-----------------------QPQGLAVDGAG-- 78 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCC-----------------------SCCCEEECTTC--
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcC-----------------------CcceeEECCCC--
Confidence 778899888 777777 557788999998765432211000000 01111111111
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH 243 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 243 (407)
...++.. ++.+.+||................+..++++|++ +++++...++.|.+||..+.. ...........+.
T Consensus 79 -~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~ 153 (270)
T 1rwi_B 79 -TVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPD 153 (270)
T ss_dssp -CEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCS--CEECCCCSCCSCC
T ss_pred -CEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCce--eEeeccccCCCce
Confidence 1122222 5556666655443322111233578999999998 777777778899999865544 2222223334678
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
++++++ +++++++...++.|.+||... .........+...+.+++++++|. ++++...++.|.+||......
T Consensus 154 ~i~~~~-~g~l~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 154 GVAVDN-SGNVYVTDTDNNRVVKLEAES------NNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CEEECT-TCCEEEEEGGGTEEEEECTTT------CCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCC
T ss_pred eEEEeC-CCCEEEEECCCCEEEEEecCC------CceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcc
Confidence 899999 888777777788999999876 333333233336789999999995 777777788999999876433
Q ss_pred ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
......+-..+.+++++++ +..+++...+++|+++++.
T Consensus 226 ~~~~~~~~~~p~~i~~~~~------------------g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 226 TVLPFTGLNTPLAVAVDSD------------------RTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECCCCSCSCEEEEEECTT------------------CCEEEEEGGGTEEEEECCC
T ss_pred eeeccCCCCCceeEEECCC------------------CCEEEEECCCCEEEEEcCC
Confidence 2211111122334444444 5666677778899999987
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=2.6e-12 Score=115.50 Aligned_cols=162 Identities=6% Similarity=0.037 Sum_probs=114.1
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
...+...+.+++|.| ++++++++..++.|.+||..+++...
T Consensus 40 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~-------------------------------------- 80 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKR-------------------------------------- 80 (333)
T ss_dssp EESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEE--------------------------------------
T ss_pred EeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEE--------------------------------------
Confidence 345667789999998 78888888888999999886543111
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCCCCceee
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD----SCLILWDARSGSTPAVKV 234 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~ 234 (407)
....+...+.+++++|++ ++++++..+ +.|.+||..++.. ...
T Consensus 81 ------------------------------~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~--~~~ 127 (333)
T 2dg1_A 81 ------------------------------PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNL--QDI 127 (333)
T ss_dssp ------------------------------EEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSC--EEE
T ss_pred ------------------------------EeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEE--EEE
Confidence 011234578999999998 777777666 6899999887662 212
Q ss_pred e--cccCcceEEEEecCCCCCEEEEEeC------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899 235 E--KAHNADIHCVDWNPHDVNLILTGSA------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 235 ~--~~~~~~v~~l~~~~~~~~~l~tg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s 306 (407)
. ......+..++++| +++++++... .+.|..+|... ++ +..+..+...+..++|+|+++.|+++
T Consensus 128 ~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF------RT-VTPIIQNISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp ECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS------CC-EEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred EccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC------CE-EEEeecCCCcccceEECCCCCEEEEE
Confidence 2 13445789999999 8887776653 35566666554 23 23332233457899999999877767
Q ss_pred eeCCCeEEEEeCCC
Q 046899 307 SAEDGILNIWDHEK 320 (407)
Q Consensus 307 ~~~d~~i~vwd~~~ 320 (407)
.+.++.|.+||+..
T Consensus 200 ~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 200 ETTANRLHRIALED 213 (333)
T ss_dssp EGGGTEEEEEEECT
T ss_pred eCCCCeEEEEEecC
Confidence 77789999999964
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.48 E-value=2.7e-13 Score=123.80 Aligned_cols=177 Identities=6% Similarity=0.011 Sum_probs=115.3
Q ss_pred CCCCCCCC-CcCceeeEee-cccCEEEEEECCCCCc--EEEEEe-------------CCCcEEEEEcCC-CCCCceeeec
Q 046899 175 GDKPLESP-SIGARGKYLG-HEDTVEDVQFCPSSAQ--EFCSVG-------------DDSCLILWDARS-GSTPAVKVEK 236 (407)
Q Consensus 175 ~i~i~d~~-~~~~~~~~~~-~~~~v~~l~~~~~~~~--~l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~ 236 (407)
.+.+|++. +++....... ..+...+++|+|++ + +++++. .++.+.+|++.. ++ ......
T Consensus 61 ~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~ 137 (365)
T 1jof_A 61 KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQ 137 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEE
T ss_pred eEEEEEECCCCCEEEeeEeecCCCCccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--CcceEe
Confidence 67777765 5544332221 11235568999999 5 344543 689999999974 44 222222
Q ss_pred ----ccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCC-CCCCCCCCCc--eeeec--CCCCCEEEEEEcCCCCCEEEE
Q 046899 237 ----AHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRR-KLTSDGVGSP--IHKFE--GHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 237 ----~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~-~~~~~~~~~~--~~~~~--~h~~~v~~v~~~~~~~~ll~s 306 (407)
.+...+.+++|+| +++++++++. ++.|++||+. + ++. +..+. .|...+..++|+|+|++++++
T Consensus 138 ~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~------g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~ 210 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLAS------GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL 210 (365)
T ss_dssp EEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTT------SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred eEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCC------CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE
Confidence 2456789999999 8888877654 6799999998 4 443 33343 245679999999999988655
Q ss_pred eeCCCeEEEEeCC--CCCcc------ccccc----CCC------cccCCC-CcCcchhccccceeeeeEeeCccceeeeE
Q 046899 307 SAEDGILNIWDHE--KIGEK------QDYGE----LKY------PIIHPA-YSSDMLDIETKLLTSIGMHLIHGRLLVCL 367 (407)
Q Consensus 307 ~~~d~~i~vwd~~--~~~~~------~~~~~----~~~------~v~~~~-~s~d~~~~~~~~~~~~~~~~~~~~~i~~~ 367 (407)
...++.|.+|++. +++.. ..++. +.. .+.+++ |||| +..|++.
T Consensus 211 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd------------------G~~l~v~ 272 (365)
T 1jof_A 211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS------------------GKYMFAS 272 (365)
T ss_dssp ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT------------------SSEEEEE
T ss_pred ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC------------------CCEEEEE
Confidence 5568999999875 33321 12221 111 345666 7777 7777665
Q ss_pred EEee------eEEEeecc
Q 046899 368 TMVK------VLEIWRMI 379 (407)
Q Consensus 368 ~~d~------~i~iwd~~ 379 (407)
..+. +|++|++.
T Consensus 273 ~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEESSTTSCCEEEEEEEC
T ss_pred CCCCCCCCCCeEEEEEEC
Confidence 5443 89999996
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.46 E-value=1.8e-12 Score=114.51 Aligned_cols=214 Identities=7% Similarity=-0.037 Sum_probs=142.5
Q ss_pred eCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899 81 IHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA 159 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 159 (407)
.+.....+++|.| +++ +++++..++.|..||..++ .
T Consensus 25 ~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~---------------------------------------- 61 (296)
T 3e5z_A 25 DGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--L---------------------------------------- 61 (296)
T ss_dssp CCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--E----------------------------------------
T ss_pred cCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--e----------------------------------------
Confidence 4566788999999 555 8889988999999997643 1
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH- 238 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~- 238 (407)
..+..+...+.+++++|++ +++++...++.|.+||..+++ ........
T Consensus 62 ----------------------------~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~--~~~~~~~~~ 110 (296)
T 3e5z_A 62 ----------------------------SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE--WESIADSFE 110 (296)
T ss_dssp ----------------------------EEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC--EEEEECEET
T ss_pred ----------------------------EEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc--EEEEeeccC
Confidence 1112234567899999999 777777777899999998776 22222111
Q ss_pred ---CcceEEEEecCCCCCEEEE----EeC-------------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899 239 ---NADIHCVDWNPHDVNLILT----GSA-------------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP 298 (407)
Q Consensus 239 ---~~~v~~l~~~~~~~~~l~t----g~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 298 (407)
...++.++++| +++++++ |+. .+.|..++.. ..+..+..+......++|+|
T Consensus 111 ~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--------g~~~~~~~~~~~~~gi~~s~ 181 (296)
T 3e5z_A 111 GKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--------GTLSAPIRDRVKPNGLAFLP 181 (296)
T ss_dssp TEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--------SCEEEEECCCSSEEEEEECT
T ss_pred CCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC--------CCEEEeecCCCCCccEEECC
Confidence 23467899999 8888887 331 2345555543 22344455667789999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCC-CCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEE
Q 046899 299 DKSSVFGSSAEDGILNIWDHE-KIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLE 374 (407)
Q Consensus 299 ~~~~ll~s~~~d~~i~vwd~~-~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~ 374 (407)
+++.+ ++.+.++.|.+||+. .++. ...+......+.+++++++ +...++ . ++.|.
T Consensus 182 dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~------------------G~l~v~-~-~~~v~ 240 (296)
T 3e5z_A 182 SGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG------------------GLIWAS-A-GDGVH 240 (296)
T ss_dssp TSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT------------------SCEEEE-E-TTEEE
T ss_pred CCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC------------------CCEEEE-c-CCeEE
Confidence 99976 788889999999997 3322 1222222233344555444 543333 3 78999
Q ss_pred EeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899 375 IWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 406 (407)
+||.. ++.+..+..+.. +.+++|+
T Consensus 241 ~~~~~-------g~~~~~~~~~~~-~~~~~f~ 264 (296)
T 3e5z_A 241 VLTPD-------GDELGRVLTPQT-TSNLCFG 264 (296)
T ss_dssp EECTT-------SCEEEEEECSSC-CCEEEEE
T ss_pred EECCC-------CCEEEEEECCCC-ceeEEEE
Confidence 99975 445555666666 8888873
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.45 E-value=8e-13 Score=118.79 Aligned_cols=209 Identities=8% Similarity=0.021 Sum_probs=145.7
Q ss_pred CCCCCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee---------cccCcc
Q 046899 172 GGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE---------KAHNAD 241 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~ 241 (407)
.++.+.+||..+++.+..+. ++-.....++++|++ +++++...++.|++||...... ....+ ..+...
T Consensus 67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~ 144 (329)
T 3fvz_A 67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQ 144 (329)
T ss_dssp CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSS
T ss_pred cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCC
Confidence 45678889988888765553 334578999999999 7888888899999999864421 12222 234446
Q ss_pred eEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCceeeecCC----------CCCEEEEEEcCCCCCEEEEeeCC
Q 046899 242 IHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIHKFEGH----------SAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~h----------~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
...++++|.+++++++.+ .++.|++||.. +..+..+... -.....|+++|++..|+++...+
T Consensus 145 P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp EEEEEECTTTCCEEEEECSSCCEEEEECTT-------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred CcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 889999985677777776 68999999943 5667666422 23489999999955588888899
Q ss_pred CeEEEEeCCCCCcccccc--cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH
Q 046899 311 GILNIWDHEKIGEKQDYG--ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE 388 (407)
Q Consensus 311 ~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~ 388 (407)
+.|++||..+++.+..+. .+...+.+++|+|. ......+...++...+.+|++|+.. +++
T Consensus 218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg------------~~~~~~g~~~v~~~~~~~v~~~~~~------~g~ 279 (329)
T 3fvz_A 218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPG------------FLFAVNGKPYFGDQEPVQGFVMNFS------SGE 279 (329)
T ss_dssp TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETT------------EEEEEECCCCTTCSCCCCEEEEETT------TCC
T ss_pred CEEEEEECCCCcEEEEEeccccCCCcceeeecCC------------EEEEeCCCEEeccCCCcEEEEEEcC------CCe
Confidence 999999998777776653 33444555666553 1111123344455566699999987 555
Q ss_pred HHHHH---hhcccceeEeeccC
Q 046899 389 VLAEL---DKFKSHIFGCDKSC 407 (407)
Q Consensus 389 ~~~~~---~~h~~~v~~~~~s~ 407 (407)
.+..+ .++...+.+|++++
T Consensus 280 ~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 280 IIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp EEEEECCSSSCCSSEEEEEECT
T ss_pred EEEEEcCCCCccCCeeEEEECC
Confidence 55554 36667788888864
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.45 E-value=3.1e-11 Score=105.95 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=130.7
Q ss_pred CCCceEEEEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
|...+..+++.+.+++++++... ++.|.+||. ++.....+...... .+..+.+.+.
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~----------------------~~~~i~~~~~ 131 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQ----------------------HPRGVTVDNK 131 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCS----------------------CEEEEEECTT
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCC----------------------CceEEEEeCC
Confidence 44578999986447887777743 789999994 34333222110000 0001111111
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
| ..+++...++.+.+|+.. ++.+..+. .+...+..|+++|++ +++++...++.|++||.. +. ....+..+
T Consensus 132 g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~ 203 (286)
T 1q7f_A 132 G---RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE-GQ--YLRQIGGE 203 (286)
T ss_dssp S---CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETT-CC--EEEEESCT
T ss_pred C---CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCC-CC--EEEEEccC
Confidence 1 223344456677778743 44455543 344578999999998 788888889999999974 33 34444332
Q ss_pred --CcceEEEEecCCCCCEEEEEeCCC-cEEEEeCCCCCCCCCCCceeeecCCC--CCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 239 --NADIHCVDWNPHDVNLILTGSADN-SIHMFDRRKLTSDGVGSPIHKFEGHS--AAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 239 --~~~v~~l~~~~~~~~~l~tg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
...+..+++++ +++++++...++ .|.+||.. ++.+..+..+. ..+.+++++|+|. ++++ +.|+.|
T Consensus 204 g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v 273 (286)
T 1q7f_A 204 GITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-------GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRL 273 (286)
T ss_dssp TTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-------SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEE
T ss_pred CccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-------CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeE
Confidence 35788999999 888888887776 99999964 46666665543 3478999999997 6656 569999
Q ss_pred EEEeCCCC
Q 046899 314 NIWDHEKI 321 (407)
Q Consensus 314 ~vwd~~~~ 321 (407)
++|++...
T Consensus 274 ~v~~~~~~ 281 (286)
T 1q7f_A 274 YIYRYVQL 281 (286)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99998653
No 176
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.44 E-value=4.6e-12 Score=125.68 Aligned_cols=249 Identities=10% Similarity=-0.073 Sum_probs=144.1
Q ss_pred eCCCceEEEEEeCCCCeEEE-----EeeCCCcEEEEeCcCCCCc-ccccCcCC-CCC--CCCCcEEEEeccccccccccC
Q 046899 81 IHPGEVNRIRELPQNSKIVA-----THTDSPDVLIWDVEAQPNR-HAVLGAAD-SHP--DLDQSVVLWSIQDHVSALAAE 151 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~-----tg~~dg~i~vwd~~~~~~~-~~~~~~~~-~~~--~~d~~i~~w~~~~~~~~~~~~ 151 (407)
+|...+..++|+| +|++|| .|+.+.+|++||+.+++.+ ........ ... ..|+...++......
T Consensus 118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~------ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTD------ 190 (695)
T ss_dssp SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCC------
T ss_pred CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCC------
Confidence 3556799999999 888888 5555678999999988754 21111110 000 002222222111000
Q ss_pred CCCCcccccCCCCCccccccCCCCCCCCCCCCcCce--eeE--eecccCEEEEEECCCCCcEEEEEeCCC----cEEEEE
Q 046899 152 PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR--GKY--LGHEDTVEDVQFCPSSAQEFCSVGDDS----CLILWD 223 (407)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~--~~~~~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd 223 (407)
. .+. .........+.+|++.++... ..+ ..+...+..+.|+|+| ++|+.++.++ .|.++|
T Consensus 191 --~-----~~~----~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~ 258 (695)
T 2bkl_A 191 --P-----SIK----VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKR 258 (695)
T ss_dssp --T-----TSC----GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEEC
T ss_pred --C-----CCc----cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEc
Confidence 0 000 000011233677777766522 222 2345678999999999 5565555444 566666
Q ss_pred cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe---CCCcEEEEeCCCCCCCCCCCc--eeeecCC--CCCEEEEEE
Q 046899 224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMFDRRKLTSDGVGSP--IHKFEGH--SAAVLCVQW 296 (407)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vwd~~~~~~~~~~~~--~~~~~~h--~~~v~~v~~ 296 (407)
..++. ...+..+...+....+ + ++.+++... .++.|.+||+.. +.. ...+..+ ...+..++|
T Consensus 259 ~~~~~---~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~l~~~~~ 327 (695)
T 2bkl_A 259 PGEKD---FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAK------PARASWKEIVPEDSSASLLSVSI 327 (695)
T ss_dssp TTCSS---CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTB------CSGGGCEEEECCCSSCEEEEEEE
T ss_pred CCCCc---eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCC------CCccCCeEEecCCCCCeEEEEEE
Confidence 54443 3344455555666666 4 444555544 257899999977 432 2344333 456888999
Q ss_pred cCCCCCEEEEeeCCCeEEEEeCC-CCCcccccccC-CCcccCCCCcCcchhccccceeeeeEeeCccceee----eEEEe
Q 046899 297 SPDKSSVFGSSAEDGILNIWDHE-KIGEKQDYGEL-KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV----CLTMV 370 (407)
Q Consensus 297 ~~~~~~ll~s~~~d~~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~----~~~~d 370 (407)
+ ++ +++++...|+..+||.+. .++....+..+ ...+..+++++| +..++ +....
T Consensus 328 ~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d------------------~~~l~~~~ss~~~P 387 (695)
T 2bkl_A 328 V-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLED------------------LDDAYYVFTSFTTP 387 (695)
T ss_dssp E-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTT------------------CSEEEEEEEETTEE
T ss_pred E-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCC------------------CCEEEEEEcCCCCC
Confidence 8 44 477899999998888665 34444444433 556777888877 44444 33345
Q ss_pred eeEEEeecc
Q 046899 371 KVLEIWRMI 379 (407)
Q Consensus 371 ~~i~iwd~~ 379 (407)
++|++||+.
T Consensus 388 ~~v~~~d~~ 396 (695)
T 2bkl_A 388 RQIYKTSVS 396 (695)
T ss_dssp EEEEEEETT
T ss_pred CEEEEEECC
Confidence 699999986
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.43 E-value=1.7e-12 Score=129.16 Aligned_cols=183 Identities=9% Similarity=-0.040 Sum_probs=114.5
Q ss_pred EEEEEECCCCCcEEEEEeCCCc----------------EEEEEcCCCCCCcee--eecccCcceEEEEecCCCCCEEEEE
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSC----------------LILWDARSGSTPAVK--VEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
+..++|+|++ +.|+.++.++. |++|++.+++..... ....+...+..+.|+| ++++|+.+
T Consensus 173 ~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~ 250 (710)
T 2xdw_A 173 FSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLS 250 (710)
T ss_dssp SCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEE
T ss_pred cceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEE
Confidence 5678999999 67777777655 999999876522122 2223556678999999 88888877
Q ss_pred eC-----CCcEEEEeCCCCCC--CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC---CeEEEEeCCCCCc--ccc
Q 046899 259 SA-----DNSIHMFDRRKLTS--DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED---GILNIWDHEKIGE--KQD 326 (407)
Q Consensus 259 ~~-----dg~i~vwd~~~~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~--~~~ 326 (407)
+. +..|.+||+..... .+ ......+..+...+.. .|+|+|..+++.+..+ +.|.+||+.+++. .+.
T Consensus 251 ~~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 251 IREGCDPVNRLWYCDLQQESNGITG-ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp EECSSSSCCEEEEEEGGGSSSSSCS-SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred EEccCCCccEEEEEECcccccccCC-ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 64 56899999874100 00 1245566666666655 4888998776555433 3799999987642 233
Q ss_pred cccCCC--cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee--eEEEeeccccccCChHHHHHHHhhcccceeE
Q 046899 327 YGELKY--PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK--VLEIWRMIDLIYRPEEEVLAELDKFKSHIFG 402 (407)
Q Consensus 327 ~~~~~~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 402 (407)
+..+.. .+..+.++ ..+..+++...++ .|++|++. +++.+..+..+.+.|..
T Consensus 329 l~~~~~~~~~~~~~~~------------------~~~~lv~~~~~~g~~~l~~~~~~------~g~~~~~l~~~~~~v~~ 384 (710)
T 2xdw_A 329 LVPEHEKDVLEWVACV------------------RSNFLVLCYLHDVKNTLQLHDLA------TGALLKIFPLEVGSVVG 384 (710)
T ss_dssp EECCCSSCEEEEEEEE------------------TTTEEEEEEEETTEEEEEEEETT------TCCEEEEECCCSSEEEE
T ss_pred ccCCCCCCeEEEEEEE------------------cCCEEEEEEEECCEEEEEEEECC------CCCEEEecCCCCceEEE
Confidence 333222 23233332 2255677777777 56666764 34444455666777777
Q ss_pred eeccC
Q 046899 403 CDKSC 407 (407)
Q Consensus 403 ~~~s~ 407 (407)
+++++
T Consensus 385 ~~~s~ 389 (710)
T 2xdw_A 385 YSGQK 389 (710)
T ss_dssp EECCT
T ss_pred EecCC
Confidence 77763
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.42 E-value=1e-11 Score=114.11 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=141.8
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc
Q 046899 88 RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN 167 (407)
Q Consensus 88 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (407)
.+.|+| +++.|+.++.++.|.+||+.+++.......+....+ ++...++......... ......+.+.+ ..+
T Consensus 85 ~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~--~g~~l~~~~~~~~~~~--~~~~~~~spdg---~~~ 156 (396)
T 3c5m_A 85 GGFIST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKG--YGTWVANSDCTKLVGI--EILKRDWQPLT---SWE 156 (396)
T ss_dssp TCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE--EEEEEECTTSSEEEEE--EEEGGGCCCCC---SHH
T ss_pred cceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCC--CCCEEEeccCCccccc--cccccccCCCC---cce
Confidence 377899 888999998888999999988764433322211100 1111110000000000 00000111111 112
Q ss_pred ccc-----cCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCC------CcEEEEEcCCCCCCceeee
Q 046899 168 ASK-----SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDD------SCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 168 ~~~-----~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~ 235 (407)
+.. ..+..+.+||+.+++..... .+...+..+.|+| ++ ..|+..+.+ ..|.+||+..+. ...+
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l 231 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN---VRKI 231 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC---CEES
T ss_pred eeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc---eeEe
Confidence 211 34556778888877654444 5677899999999 67 555555543 468888987655 2222
Q ss_pred ccc--CcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC-CCCCEEEEe
Q 046899 236 KAH--NADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP-DKSSVFGSS 307 (407)
Q Consensus 236 ~~~--~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ll~s~ 307 (407)
..+ ...+..+.|+| +++.|+.++.+ +.|++||+.+ ++...... .. ... +.|+| +|+.+ +++
T Consensus 232 ~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~------g~~~~l~~-~~-~~~-~~~s~~dg~~l-~~~ 300 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPET------LENEEVMV-MP-PCS-HLMSNFDGSLM-VGD 300 (396)
T ss_dssp SCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTT------CCEEEEEE-CC-SEE-EEEECSSSSEE-EEE
T ss_pred eccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCC------CCeEEeee-CC-CCC-CCccCCCCceE-EEe
Confidence 223 23578899999 88877666543 4499999987 44332221 11 233 89999 99955 454
Q ss_pred e----------------CCCeEEEEeCCCCCcccccccCCC-----------cccCCCCcCcchhccccceeeeeEeeCc
Q 046899 308 A----------------EDGILNIWDHEKIGEKQDYGELKY-----------PIIHPAYSSDMLDIETKLLTSIGMHLIH 360 (407)
Q Consensus 308 ~----------------~d~~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~s~d~~~~~~~~~~~~~~~~~~ 360 (407)
+ .+..|.+||+.+++. ..+..+.. .+..+.|+||
T Consensus 301 ~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~d------------------ 361 (396)
T 3c5m_A 301 GCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPN------------------ 361 (396)
T ss_dssp ECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTT------------------
T ss_pred cCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccC------------------
Confidence 3 347899999987553 33433333 2456778777
Q ss_pred cceeeeEEE-eeeEEEeec
Q 046899 361 GRLLVCLTM-VKVLEIWRM 378 (407)
Q Consensus 361 ~~~i~~~~~-d~~i~iwd~ 378 (407)
+..|+..+. ++...||.+
T Consensus 362 g~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 362 DDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp SSEEEEEECTTSSCEEEEE
T ss_pred CCeEEEEecCCCCceEEEE
Confidence 666665554 445555554
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.41 E-value=1.9e-13 Score=125.84 Aligned_cols=202 Identities=12% Similarity=0.052 Sum_probs=116.8
Q ss_pred CceEEEEEeCCCCeEEEEeeCC---CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 84 GEVNRIRELPQNSKIVATHTDS---PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
..+..++|+| ++++|+..... ..|.+||+.+++............. ...| .+.
T Consensus 36 ~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~-----~~~~------------------spd 91 (396)
T 3c5m_A 36 NYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTF-----GGFI------------------STD 91 (396)
T ss_dssp CCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTT-----TCEE------------------CTT
T ss_pred eeeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccc-----cceE------------------CCC
Confidence 3477888999 77777666442 3677888876643322111110000 0011 111
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEE-------------------EEECCCCCcEEEEE-----eCC
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED-------------------VQFCPSSAQEFCSV-----GDD 216 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~-------------------l~~~~~~~~~l~s~-----~~d 216 (407)
| ..++..+.++.+.+||...++.......+...... +.|+|++ ..++.+ ..+
T Consensus 92 g---~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 92 E---RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPT 167 (396)
T ss_dssp S---SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCC
T ss_pred C---CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCc
Confidence 1 22334444455677777666654444433332222 3567777 444433 456
Q ss_pred CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCCceeeecCC--C
Q 046899 217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------NSIHMFDRRKLTSDGVGSPIHKFEGH--S 288 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~h--~ 288 (407)
..|.+||+.+++ .. .+..+...+..+.|+|.++..|+..+.+ ..|.+||+.. .+ ...+..+ .
T Consensus 168 ~~l~~~d~~~g~--~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~------~~-~~~l~~~~~~ 237 (396)
T 3c5m_A 168 CRLIKVDIETGE--LE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG------SN-VRKIKEHAEG 237 (396)
T ss_dssp EEEEEEETTTCC--EE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS------CC-CEESSCCCTT
T ss_pred ceEEEEECCCCc--EE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC------Cc-eeEeeccCCC
Confidence 789999998876 22 3335677889999999445655554433 3688888865 33 3333333 2
Q ss_pred CCEEEEEEcCCCCCEEEEeeCC----CeEEEEeCCCCCc
Q 046899 289 AAVLCVQWSPDKSSVFGSSAED----GILNIWDHEKIGE 323 (407)
Q Consensus 289 ~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd~~~~~~ 323 (407)
..+..++|+|+|++|+..+..+ +.|.+||+.+++.
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 3588899999999875443322 4599999987654
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.39 E-value=6.4e-12 Score=114.31 Aligned_cols=128 Identities=8% Similarity=0.039 Sum_probs=88.5
Q ss_pred CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc------c----CcceEEEEecCCCCCEEEEEeC-----------C
Q 046899 203 CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA------H----NADIHCVDWNPHDVNLILTGSA-----------D 261 (407)
Q Consensus 203 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~----~~~v~~l~~~~~~~~~l~tg~~-----------d 261 (407)
.|++ ..++..+.++.|.++|+............. + ......++++| +++.++++.. .
T Consensus 208 ~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 208 ALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp EECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCC
T ss_pred cccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCC
Confidence 4555 455666788999999987654211111110 0 11112378899 7666665532 3
Q ss_pred CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC--CcccccccCCCcccCCCC
Q 046899 262 NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI--GEKQDYGELKYPIIHPAY 339 (407)
Q Consensus 262 g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~ 339 (407)
+.|.+||+.+ .+.+.++..+. +.+++|+|+|++|+ +++. ++|.+||+.++ +.+.++.........+++
T Consensus 286 ~~v~viD~~t------~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 286 AEIWVMDTKT------KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp SEEEEEETTT------TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred ceEEEEECCC------CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence 4899999999 88999998876 89999999999776 5554 99999999998 877776555554456666
Q ss_pred cCc
Q 046899 340 SSD 342 (407)
Q Consensus 340 s~d 342 (407)
+||
T Consensus 356 ~p~ 358 (361)
T 2oiz_A 356 HPV 358 (361)
T ss_dssp CCC
T ss_pred cCC
Confidence 665
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.39 E-value=1e-11 Score=112.20 Aligned_cols=163 Identities=13% Similarity=0.198 Sum_probs=101.2
Q ss_pred EEEEEECCCCCcEEEEEeC---------------------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecC
Q 046899 197 VEDVQFCPSSAQEFCSVGD---------------------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~ 249 (407)
+..++|+|++ +.|+.++. ...|.+||+.+++ ....+.. . .+..+.|+|
T Consensus 106 ~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~~~~~~~sp 180 (347)
T 2gop_A 106 IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-RFSSGIWHR 180 (347)
T ss_dssp EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-TTCEEEEET
T ss_pred ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C-CcccccCCC
Confidence 8899999999 55665542 2579999998776 3133333 3 788999999
Q ss_pred CCCCEEEEEeCCC-------cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--------CeEE
Q 046899 250 HDVNLILTGSADN-------SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GILN 314 (407)
Q Consensus 250 ~~~~~l~tg~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--------~~i~ 314 (407)
++ +++++..++ ...+|.+.. ++. ..+..+ ..+..+ +|+|++|+ .++.+ ..|.
T Consensus 181 -dg-~~~~~~~~~~~~~~~~~~~l~~~d~------~~~-~~l~~~-~~~~~~--spdg~~l~-~~~~~~~~~~~~~~~l~ 247 (347)
T 2gop_A 181 -DK-IVVNVPHREIIPQYFKFWDIYIWED------GKE-EKMFEK-VSFYAV--DSDGERIL-LYGKPEKKYMSEHNKLY 247 (347)
T ss_dssp -TE-EEEEEECCCSSCCSSCCEEEEEEET------TEE-EEEEEE-ESEEEE--EECSSCEE-EEECCSSSCCCSSCEEE
T ss_pred -Ce-EEEEEecccccccccccccEEEeCC------Cce-EEeccC-cceeeE--CCCCCEEE-EEEccccCCccccceEE
Confidence 88 777776542 334444433 443 333334 455554 99999875 44433 4788
Q ss_pred EEeCCCCCcccccccCCCcccC-CCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899 315 IWDHEKIGEKQDYGELKYPIIH-PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL 393 (407)
Q Consensus 315 vwd~~~~~~~~~~~~~~~~v~~-~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 393 (407)
+|| +++.......+...+.. +.|+ | + .+++++.++.++|| +. +++. ..+
T Consensus 248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-d------------------g-~~~~~~~~~~~~l~-~~------~g~~-~~~ 297 (347)
T 2gop_A 248 IYD--GKEVMGILDEVDRGVGQAKIKD-G------------------K-VYFTLFEEGSVNLY-IW------DGEI-KPI 297 (347)
T ss_dssp EEC--SSCEEESSTTCCSEEEEEEEET-T------------------E-EEEEEEETTEEEEE-EE------SSSE-EEE
T ss_pred EEC--CCceEeccccCCcccCCccEEc-C------------------c-EEEEEecCCcEEEE-Ec------CCce-EEE
Confidence 888 43333333334444443 4443 3 5 77788899999999 86 2222 223
Q ss_pred hhcccceeEeeccC
Q 046899 394 DKFKSHIFGCDKSC 407 (407)
Q Consensus 394 ~~h~~~v~~~~~s~ 407 (407)
..+.+.|.+++||+
T Consensus 298 ~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 298 AKGRHWIMGFDVDE 311 (347)
T ss_dssp ECSSSEEEEEEESS
T ss_pred ecCCCeEEeeeeeC
Confidence 34567788888874
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.39 E-value=4.9e-12 Score=124.82 Aligned_cols=128 Identities=15% Similarity=0.121 Sum_probs=85.1
Q ss_pred ccCEEEEEECCCCCcEEEEEeCC--------CcEEEEEcC-CCCC-CceeeecccCcceEEEEecCCCCCEEEEEeCCC-
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDD--------SCLILWDAR-SGST-PAVKVEKAHNADIHCVDWNPHDVNLILTGSADN- 262 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg- 262 (407)
...+..++|+|+| +.|+.++.+ ..|.+||+. ++.. ........+...+..+.|+| +++++++++.++
T Consensus 187 ~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~ 264 (662)
T 3azo_A 187 HRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGW 264 (662)
T ss_dssp SSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSS
T ss_pred CCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCC
Confidence 3456778999999 677766644 479999998 4521 12333344578899999999 888888888888
Q ss_pred -cEEEEeCCCCCCCCCCCceeeecCCCCC--------EEEEEEcCCCCCEEEEeeCCCeEEEE--eCCCCCcccccccCC
Q 046899 263 -SIHMFDRRKLTSDGVGSPIHKFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGILNIW--DHEKIGEKQDYGELK 331 (407)
Q Consensus 263 -~i~vwd~~~~~~~~~~~~~~~~~~h~~~--------v~~v~~~~~~~~ll~s~~~d~~i~vw--d~~~~~~~~~~~~~~ 331 (407)
.|.+||+.. ++.......+... +..++|+|++. ++++++. +.++|| |+..+ .+..+..+.
T Consensus 265 ~~l~~~~~~~------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~-~~~~l~~~~ 335 (662)
T 3azo_A 265 WNLHRVDPAT------GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESG-ELVDAAGPW 335 (662)
T ss_dssp CEEEEECTTT------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTT-EEEECCSSC
T ss_pred eEEEEEECCC------CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCC-cEEEecCCC
Confidence 566666644 4433333322221 56789999988 5568887 999999 55543 355554444
Q ss_pred C
Q 046899 332 Y 332 (407)
Q Consensus 332 ~ 332 (407)
.
T Consensus 336 ~ 336 (662)
T 3azo_A 336 T 336 (662)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.38 E-value=4.1e-11 Score=105.79 Aligned_cols=181 Identities=9% Similarity=0.044 Sum_probs=121.0
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS 160 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 160 (407)
.+...+.++++.| +++++++...++.|.+||..+++........
T Consensus 66 ~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~----------------------------------- 109 (296)
T 3e5z_A 66 HPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSF----------------------------------- 109 (296)
T ss_dssp SSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEE-----------------------------------
T ss_pred CCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeecc-----------------------------------
Confidence 4677899999998 8888888777789999998655321110000
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC-----------------CCcEEEEE
Q 046899 161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-----------------DSCLILWD 223 (407)
Q Consensus 161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-----------------dg~i~iwd 223 (407)
. ......+..++++|+| +++++.+. .+.|..+|
T Consensus 110 ---------------------------~--~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 110 ---------------------------E--GKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp ---------------------------T--TEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred ---------------------------C--CCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEEC
Confidence 0 0012345678999999 77776321 23555555
Q ss_pred cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCc---eeeecCCCCCEEEEEEcCCC
Q 046899 224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP---IHKFEGHSAAVLCVQWSPDK 300 (407)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~---~~~~~~h~~~v~~v~~~~~~ 300 (407)
.. ++ ......+......++|+| +++.+++.+.++.|.+||+... +.. ...+..+...+.+++++++|
T Consensus 160 ~~-g~---~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~-----g~~~~~~~~~~~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 160 PD-GT---LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNAR-----GETEYQGVHFTVEPGKTDGLRVDAGG 229 (296)
T ss_dssp TT-SC---EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSS-----SCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred CC-CC---EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCC-----CcCcCCCeEeeCCCCCCCeEEECCCC
Confidence 44 33 334445666778999999 8888877778899999999731 333 23333355667889999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC-cCc
Q 046899 301 SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY-SSD 342 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-s~d 342 (407)
. |+++. ++.|.+||.. ++.+..+..+.. +++++| +++
T Consensus 230 ~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d 267 (296)
T 3e5z_A 230 L-IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPE 267 (296)
T ss_dssp C-EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTT
T ss_pred C-EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCC
Confidence 8 55444 7899999987 566666665555 666777 344
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.35 E-value=1.3e-10 Score=111.29 Aligned_cols=274 Identities=9% Similarity=0.016 Sum_probs=167.5
Q ss_pred cccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc--CCCCcccccCcC
Q 046899 49 EQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE--AQPNRHAVLGAA 126 (407)
Q Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~--~~~~~~~~~~~~ 126 (407)
++...++.+.++ +....+....+.....+..+.|+| +++++++++.|+.|.+||+. +.+....+....
T Consensus 171 V~~~~~~~V~vi---------D~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 171 VTLRDAGQIALI---------DGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp EEETTTTEEEEE---------ETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred EEeCCCCeEEEE---------ECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC
Confidence 344455566666 122233444555666788999999 88889999999999999995 544333332111
Q ss_pred CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-----------cc
Q 046899 127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-----------ED 195 (407)
Q Consensus 127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-----------~~ 195 (407)
....+.+++-. .+.|+. .+++...++.+.++|..+.+.+..+.-. ..
T Consensus 241 -----------------~P~~ia~s~~~---~pDGk~--l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 241 -----------------EARSIETSKME---GWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp -----------------EEEEEEECCST---TCTTTE--EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred -----------------CCceeEEcccc---CCCCCE--EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 01111111000 001111 1223344567778888888877766421 22
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTS 274 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~ 274 (407)
.+..+..+++++.++++...+|.|.++|...........+ ........+.|+| ++++++++. .++.|.++|+.+
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t--- 373 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE--- 373 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT---
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCC---
Confidence 6788999998867777777889999999987652222222 3445667889999 888776654 578999999998
Q ss_pred CCCCCceeeecC-----CCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCC-------CCcccccccCCCcccCCCCcC
Q 046899 275 DGVGSPIHKFEG-----HSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEK-------IGEKQDYGELKYPIIHPAYSS 341 (407)
Q Consensus 275 ~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~s~ 341 (407)
++.+..+.. |.+.-..+ ++|++..+++++. .+++|.++|..+ .+.++++......-..+..+|
T Consensus 374 ---~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p 449 (567)
T 1qks_A 374 ---GKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP 449 (567)
T ss_dssp ---TEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred ---CcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC
Confidence 776666543 32222222 6888666776664 468999999987 455565554332212233455
Q ss_pred cchhccccceeeeeEeeCccceeeeEEE-------eeeEEEeecccc
Q 046899 342 DMLDIETKLLTSIGMHLIHGRLLVCLTM-------VKVLEIWRMIDL 381 (407)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~i~~~~~-------d~~i~iwd~~~~ 381 (407)
| +.++..-.. ..+|.|+|+.+.
T Consensus 450 ~------------------~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 450 N------------------SQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp T------------------CSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred C------------------CCeEEEecCCCCCcccCceEEEEECCcc
Confidence 5 444443221 348999999853
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.33 E-value=7.1e-11 Score=105.94 Aligned_cols=219 Identities=9% Similarity=-0.058 Sum_probs=143.3
Q ss_pred eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
....+........+++++ +++++++...++.|.+||..+.+....+........ ...+..+
T Consensus 76 ~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~------------------~~~p~~i 136 (328)
T 3dsm_A 76 EVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDME------------------SGSTEQM 136 (328)
T ss_dssp EEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT------------------TCBCCCE
T ss_pred EEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc------------------CCCcceE
Confidence 434445667899999988 667766665889999999987765443322110000 0001111
Q ss_pred cccccCCCCCcccccc-CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC----------CcEEEEEc
Q 046899 156 KSTASGGANSKNASKS-GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD----------SCLILWDA 224 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d----------g~i~iwd~ 224 (407)
.+ ..+ ...++.. .++.+.++|..+++.+..+... .....++++|+| ++++++..+ +.|.++|.
T Consensus 137 ~~-~~~---~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 137 VQ-YGK---YVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp EE-ETT---EEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred EE-ECC---EEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEEC
Confidence 11 001 1122222 3678888999888877776543 345688999998 667666554 78999999
Q ss_pred CCCCCCceeeeccc-CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee--eecCCCCCEEEEEEcCCCC
Q 046899 225 RSGSTPAVKVEKAH-NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH--KFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 225 ~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~ 301 (407)
.+++ ....+... ......++++| +++.++++.. .|.+||..+ ++... .+..+......++++|++.
T Consensus 211 ~t~~--v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t------~~~~~~~~~~~~~~~p~gi~vdp~~g 279 (328)
T 3dsm_A 211 ETFT--VEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEA------DRVPVRPFLEFRDTKYYGLTVNPNNG 279 (328)
T ss_dssp TTTE--EEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTC------SSCCSSCSBCCCSSCEEEEEECTTTC
T ss_pred CCCe--EEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCC------CceeeeeeecCCCCceEEEEEcCCCC
Confidence 8876 34343321 34678999999 7888877664 899999987 44321 1222245789999999766
Q ss_pred CEEEEe----eCCCeEEEEeCCCCCcccccccCC
Q 046899 302 SVFGSS----AEDGILNIWDHEKIGEKQDYGELK 331 (407)
Q Consensus 302 ~ll~s~----~~d~~i~vwd~~~~~~~~~~~~~~ 331 (407)
.|+++. ..++.|.+||.. ++.+.++....
T Consensus 280 ~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~ 312 (328)
T 3dsm_A 280 EVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGI 312 (328)
T ss_dssp CEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEE
T ss_pred eEEEEcccccccCCEEEEECCC-CCEEEEEEecc
Confidence 788787 678999999998 77777765433
No 186
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=1.9e-11 Score=110.66 Aligned_cols=128 Identities=12% Similarity=0.081 Sum_probs=98.7
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
.+.. |+.++| ++ ++|+++ .++.|++||+++.. .......|...+.++.+.+ . .+++++.||.+.+||+..
T Consensus 86 ~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 86 EIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRT 155 (388)
T ss_dssp ECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTT
T ss_pred eCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccC
Confidence 3556 999999 66 788888 88999999999876 3445567778888888766 2 388889999999999997
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc--cccc------c---cCCCcccCCCCc
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE--KQDY------G---ELKYPIIHPAYS 340 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~s 340 (407)
+.... +...|++++|||+| + +.|..||++++|+....+. ..++ . ++...|.++.|.
T Consensus 156 ------~~~~~----~~~~Vs~v~WSpkG--~-~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl 222 (388)
T 1xip_A 156 ------KSTKQ----LAQNVTSFDVTNSQ--L-AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL 222 (388)
T ss_dssp ------CCEEE----EEESEEEEEECSSE--E-EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES
T ss_pred ------Ccccc----ccCCceEEEEcCCc--e-EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe
Confidence 44432 34689999999999 4 5788999999998877553 3333 2 356778888886
Q ss_pred Cc
Q 046899 341 SD 342 (407)
Q Consensus 341 ~d 342 (407)
++
T Consensus 223 ~~ 224 (388)
T 1xip_A 223 SP 224 (388)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.29 E-value=1.3e-10 Score=104.23 Aligned_cols=235 Identities=7% Similarity=-0.047 Sum_probs=147.9
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
.....+.+. +++++++...++.|.+||..+++.+..+..... +..+.+.+.+
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~------------------------p~~i~~~~~g-- 95 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS------------------------PRYIHFLSDE-- 95 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSS------------------------EEEEEEEETT--
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCC------------------------CcEEEEeCCC--
Confidence 446777764 567777777789999999998876555422110 0001111111
Q ss_pred CCccccccCCCCCCCCCCCCcCceeeEeecc-----cCEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCCCceeeecc
Q 046899 164 NSKNASKSGGNGDKPLESPSIGARGKYLGHE-----DTVEDVQFCPSSAQEFCSVG-DDSCLILWDARSGSTPAVKVEKA 237 (407)
Q Consensus 164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~ 237 (407)
...++...++.+.++|..+++....+.... .....+++ ..+ .++++.. .++.|.++|+.+++ ....+..
T Consensus 96 -~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~--~~~~i~~ 170 (328)
T 3dsm_A 96 -KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDK--VVDELTI 170 (328)
T ss_dssp -EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTE--EEEEEEC
T ss_pred -eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCe--EEEEEEc
Confidence 112222246778888888887766665332 14556777 334 5555554 48999999999877 4444432
Q ss_pred cCcceEEEEecCCCCCEEEEEeCC----------CcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCCEEEE
Q 046899 238 HNADIHCVDWNPHDVNLILTGSAD----------NSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ll~s 306 (407)
......+.++| ++++++++..+ +.|.++|..+ ++....+... ......++|+|++++|+++
T Consensus 171 -g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~~~~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 171 -GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFKFKLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp -SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred -CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCC------CeEEEEEecCCCCCceeEEEecCCCEEEEE
Confidence 33456789999 88877776654 7899999988 6766666532 2367999999999988754
Q ss_pred eeCCCeEEEEeCCCCCcccc--cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE----EEeeeEEEeecc
Q 046899 307 SAEDGILNIWDHEKIGEKQD--YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL----TMVKVLEIWRMI 379 (407)
Q Consensus 307 ~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~----~~d~~i~iwd~~ 379 (407)
.+ .|.+||+.+++.... +........+++++|+ .+...++. ..+++|.+||..
T Consensus 243 ~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~-----------------~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 243 NN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN-----------------NGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp SS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT-----------------TCCEEEEECTTSSSEEEEEEECTT
T ss_pred cc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCC-----------------CCeEEEEcccccccCCEEEEECCC
Confidence 32 899999988665321 1111223344455543 13334444 467899999985
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.27 E-value=2.6e-10 Score=113.33 Aligned_cols=158 Identities=5% Similarity=-0.128 Sum_probs=101.7
Q ss_pred cccCEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCC------CCCCceeeecccCcceEEEEecCCCCCEEEEEeCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGD-----DSCLILWDARS------GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD 261 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d 261 (407)
|...+..+.|+|+| ++|+.++. +..|.+||+.+ +.. ....+..+...+.. .|+| ++..|+..+.+
T Consensus 231 ~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~ 306 (710)
T 2xdw_A 231 EPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTNR 306 (710)
T ss_dssp CTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEECT
T ss_pred CCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEECC
Confidence 44557889999999 55555543 56899999986 421 13444455555544 4778 66766655543
Q ss_pred ----CcEEEEeCCCCCCCCCCC--ceeeecCCCC--CEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCCCCcccccccCC
Q 046899 262 ----NSIHMFDRRKLTSDGVGS--PIHKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEKIGEKQDYGELK 331 (407)
Q Consensus 262 ----g~i~vwd~~~~~~~~~~~--~~~~~~~h~~--~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~ 331 (407)
+.|.+||+.. +. ....+..|.. .+..++|++++. ++++...|+. |.+||+.+++.+..+..+.
T Consensus 307 ~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~ 379 (710)
T 2xdw_A 307 HSPNYRLINIDFTD------PEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGALLKIFPLEV 379 (710)
T ss_dssp TCTTCEEEEEETTS------CCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCCEEEEECCCS
T ss_pred CCCCCEEEEEeCCC------CCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCCEEEecCCCC
Confidence 3699999987 33 2355555544 688899986655 6678888885 5667776666555555555
Q ss_pred CcccCCCCcCcchhccccceeeeeEeeCccceeeeE----EEeeeEEEeecc
Q 046899 332 YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL----TMVKVLEIWRMI 379 (407)
Q Consensus 332 ~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~----~~d~~i~iwd~~ 379 (407)
..+..+.++++ +..++.. ...++|++||+.
T Consensus 380 ~~v~~~~~s~d------------------~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 380 GSVVGYSGQKK------------------DTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp SEEEEEECCTT------------------CSEEEEEEECSSCCCEEEEEETT
T ss_pred ceEEEEecCCC------------------CCEEEEEEeCCCCCCEEEEEECC
Confidence 55666666665 4433322 233589999986
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=6.6e-12 Score=113.70 Aligned_cols=165 Identities=12% Similarity=0.073 Sum_probs=122.6
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---------CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS---------TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
+++.+++++.. .++++|+.+ .+.+|++.... ..... ...+.. |+.|+| ++++|+++ .++.|++
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 68899999988 688888887 55669876432 11111 224566 999999 67889888 8899999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI 346 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 346 (407)
||++. .........|+.++.++.+.+.. ++++..||.|.+||+....... ....|++++|||+
T Consensus 111 ~dv~s------l~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpk---- 173 (388)
T 1xip_A 111 LDLEE------LSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNS---- 173 (388)
T ss_dssp EESSS------TTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSS----
T ss_pred EEchh------hhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCC----
Confidence 99998 45555666778889998887653 4688999999999999766532 4557889999887
Q ss_pred cccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH--HH------HHh---hcccceeEeeccC
Q 046899 347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV--LA------ELD---KFKSHIFGCDKSC 407 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~--~~------~~~---~h~~~v~~~~~s~ 407 (407)
+ ++.|..||++++|+.. .+++ .+ .+. +|...|.+|.|.+
T Consensus 174 --------------G--~~vg~~dg~i~~~~~~------~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 174 --------------Q--LAVLLKDRSFQSFAWR------NGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp --------------E--EEEEETTSCEEEEEEE------TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred --------------c--eEEEEcCCcEEEEcCC------CccccccceecCCcccccccCCCeeEEEEEEec
Confidence 5 6789999999999886 2221 11 223 5788899998863
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.25 E-value=2.5e-09 Score=93.99 Aligned_cols=223 Identities=8% Similarity=-0.016 Sum_probs=137.2
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccc-cCcCCCC------CCC--------CCcEEEEeccccc
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAV-LGAADSH------PDL--------DQSVVLWSIQDHV 145 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-~~~~~~~------~~~--------d~~i~~w~~~~~~ 145 (407)
.+...+.++++.+ +++++++...++.|.+||.. +...... ....... ++. ++.+..|+.....
T Consensus 12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~ 89 (299)
T 2z2n_A 12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII 89 (299)
T ss_dssp SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE
Confidence 3557899999888 78877777667899999987 4322111 1000000 110 3456666655322
Q ss_pred cccccC--CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899 146 SALAAE--PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW 222 (407)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 222 (407)
..+... ......+.........++...++.+..+|. .++.... .......+..+++.+++ .++++...++.|..|
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRI 167 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEE
Confidence 222111 111111222222233444445667777777 4433222 12234578999999998 777777777899999
Q ss_pred EcCCCCCCceee-ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCC
Q 046899 223 DARSGSTPAVKV-EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDK 300 (407)
Q Consensus 223 d~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~ 300 (407)
|. +++ .... .......+.++++++ ++++.++...++.|.+||. . ++... .+..+...+.+++++++|
T Consensus 168 ~~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 168 TE-SGD--ITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-S------GEITEFKIPTPNARPHAITAGAGI 236 (299)
T ss_dssp CT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEEEEEECSTT
T ss_pred cC-CCc--EEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-C------CcEEEEECCCCCCCceeEEECCCC
Confidence 98 555 2222 233445688999999 7887777667889999998 5 44322 233355679999999998
Q ss_pred CCEEEEeeCCCeEEEEeCC
Q 046899 301 SSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~ 319 (407)
. ++++...++.|..||..
T Consensus 237 ~-l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 237 D-LWFTEWGANKIGRLTSN 254 (299)
T ss_dssp C-EEEEETTTTEEEEEETT
T ss_pred C-EEEeccCCceEEEECCC
Confidence 8 66566568899999983
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.24 E-value=3.6e-10 Score=98.05 Aligned_cols=203 Identities=10% Similarity=0.008 Sum_probs=127.0
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG 161 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
+...+.+|++.+ +++++++.. ++.|.+||..+..... +...... ....+...+ .|
T Consensus 65 ~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~-~~~~~~~---------------~p~~i~~~~-------~g 119 (270)
T 1rwi_B 65 GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTV-LPFDGLN---------------YPEGLAVDT-------QG 119 (270)
T ss_dssp SCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEE-CCCCSCS---------------SEEEEEECT-------TC
T ss_pred CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEee-eecCCcC---------------CCcceEECC-------CC
Confidence 345788999988 777776666 8899999987653321 1100000 000000000 11
Q ss_pred CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899 162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241 (407)
Q Consensus 162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 241 (407)
...++...++.+.+++..+.............+.+++++|++ +++++...++.|.+||..... .......+...
T Consensus 120 ---~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~ 193 (270)
T 1rwi_B 120 ---AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNN--QVVLPFTDITA 193 (270)
T ss_dssp ---CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCC--EEECCCSSCCS
T ss_pred ---CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCc--eEeecccCCCC
Confidence 112222234445555443333222222233467889999998 677777778899999987655 22222233366
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
+.++++++ +++++++...++.|.+||... .........+...+.+++++++|. |+++...++.|+++++...
T Consensus 194 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~------~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 194 PWGIAVDE-AGTVYVTEHNTNQVVKLLAGS------TTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEEECT-TCCEEEEETTTSCEEEECTTC------SCCEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGG
T ss_pred ceEEEECC-CCCEEEEECCCCcEEEEcCCC------CcceeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCc
Confidence 88999999 778877777788999999875 333222223335789999999997 7778888999999998875
Q ss_pred Cc
Q 046899 322 GE 323 (407)
Q Consensus 322 ~~ 323 (407)
+.
T Consensus 266 ~~ 267 (270)
T 1rwi_B 266 HH 267 (270)
T ss_dssp GS
T ss_pred cc
Confidence 43
No 192
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=1.6e-10 Score=102.17 Aligned_cols=220 Identities=9% Similarity=-0.017 Sum_probs=135.2
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG 162 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 162 (407)
..-..+..|+|.++.++++...++.|..||..++.. ..+
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------~~~----------------------- 50 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------QRV----------------------- 50 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------EEE-----------------------
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------EEE-----------------------
Confidence 344567888987788888888888999999875421 011
Q ss_pred CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc--cCc
Q 046899 163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA--HNA 240 (407)
Q Consensus 163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~ 240 (407)
.....+.+++++|++ +++++ . ++.|.+||..+++......... ...
T Consensus 51 -----------------------------~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~ 98 (297)
T 3g4e_A 51 -----------------------------TMDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNN 98 (297)
T ss_dssp -----------------------------ECSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSE
T ss_pred -----------------------------eCCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCC
Confidence 123468899999999 55544 4 5689999998766211111111 123
Q ss_pred ceEEEEecCCCCCEEEEEeCC---------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 241 DIHCVDWNPHDVNLILTGSAD---------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
.++.++++| +++++++.... ..-.+|.+... ++ +..+..+....+.++|+|+++.|+++.+.++
T Consensus 99 ~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~ 171 (297)
T 3g4e_A 99 RFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSY 171 (297)
T ss_dssp EEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred CCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC-----CC-EEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence 578899999 88866654221 22345554431 22 2223233345789999999998877888889
Q ss_pred eEEEEeCC--CCCcc-----cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccC
Q 046899 312 ILNIWDHE--KIGEK-----QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYR 384 (407)
Q Consensus 312 ~i~vwd~~--~~~~~-----~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~ 384 (407)
.|.+||+. ++... ..+........++++ ...+...++....+.|.+||..
T Consensus 172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~------------------d~~G~lwva~~~~~~v~~~d~~----- 228 (297)
T 3g4e_A 172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI------------------DAEGKLWVACYNGGRVIRLDPV----- 228 (297)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE------------------BTTSCEEEEEETTTEEEEECTT-----
T ss_pred cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE------------------CCCCCEEEEEcCCCEEEEEcCC-----
Confidence 99999974 33211 111111111222222 2225444444455689999886
Q ss_pred ChHHHHHHHhhcccceeEeecc
Q 046899 385 PEEEVLAELDKFKSHIFGCDKS 406 (407)
Q Consensus 385 ~~~~~~~~~~~h~~~v~~~~~s 406 (407)
+++.+..+..+...+++++|+
T Consensus 229 -tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 229 -TGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp -TCCEEEEEECSSSBEEEEEEE
T ss_pred -CceEEEEEECCCCCceEEEEe
Confidence 566666677676678888885
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.20 E-value=6.4e-10 Score=99.78 Aligned_cols=178 Identities=10% Similarity=-0.022 Sum_probs=116.9
Q ss_pred cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec
Q 046899 169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~ 248 (407)
....++.++.| ..+....+..+...+.+++|+|++ ++++++..++.|.+||..+++ .......+...+.+++++
T Consensus 22 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~ 95 (333)
T 2dg1_A 22 PIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIH 95 (333)
T ss_dssp CCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEEC
T ss_pred EEeecccCccc---ccceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEEC
Confidence 33556667777 344555666677778999999998 778888889999999998776 333333456789999999
Q ss_pred CCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCCceeeec--CCCCCEEEEEEcCCCCCEEEEeeC------CCeEEEE
Q 046899 249 PHDVNLILTGSAD----NSIHMFDRRKLTSDGVGSPIHKFE--GHSAAVLCVQWSPDKSSVFGSSAE------DGILNIW 316 (407)
Q Consensus 249 ~~~~~~l~tg~~d----g~i~vwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~ll~s~~~------d~~i~vw 316 (407)
| +++++++...+ +.|.+||... ......+. .+...+.+++++|+|. ++++... .+.|..+
T Consensus 96 ~-dg~l~v~~~~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 96 K-DGRLFVCYLGDFKSTGGIFAATENG------DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp T-TSCEEEEECTTSSSCCEEEEECTTS------CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEE
T ss_pred C-CCcEEEEeCCCCCCCceEEEEeCCC------CEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEE
Confidence 9 88888777666 6899999887 44432332 2456799999999998 5445543 3556666
Q ss_pred eCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeecc
Q 046899 317 DHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMI 379 (407)
Q Consensus 317 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~ 379 (407)
|....+ ...+......+.+++|++| +..++ +.+.++.|++||+.
T Consensus 168 ~~~~~~-~~~~~~~~~~~~~i~~~~d------------------g~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 168 SPDFRT-VTPIIQNISVANGIALSTD------------------EKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp CTTSCC-EEEEEEEESSEEEEEECTT------------------SSEEEEEEGGGTEEEEEEEC
T ss_pred eCCCCE-EEEeecCCCcccceEECCC------------------CCEEEEEeCCCCeEEEEEec
Confidence 665433 2222222223445566665 44333 33345677777774
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.20 E-value=5.3e-10 Score=97.45 Aligned_cols=193 Identities=9% Similarity=0.045 Sum_probs=133.9
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN 174 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (407)
.+++|++++.|+.|.+||..+++.+..+..+.. .......+.+.|. .++ +.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----------------------~~~~~~~~~pdG~---ilv--s~~~ 56 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----------------------WECNSVAATKAGE---ILF--SYSK 56 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----------------------CCCCEEEECTTSC---EEE--ECBS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----------------------CCCcCeEECCCCC---EEE--eCCC
Confidence 468999999999999999987765444332210 0011111222222 122 3455
Q ss_pred CCCCCCCCCcCceeeEeec-ccCEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCceeeec------ccCcceEEEE
Q 046899 175 GDKPLESPSIGARGKYLGH-EDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEK------AHNADIHCVD 246 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~l~ 246 (407)
.+..+|. +++.+-.+..+ ...+.++.+.|+| +++++.+. ++.|..+|. +++ .+..+. .+......++
T Consensus 57 ~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk--~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 57 GAKMITR-DGRELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGE--VLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp EEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSC--EEEEEEECCSCSSGGGSCSCCE
T ss_pred CEEEECC-CCCEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCC--EEEEEeccCCCCcccccccCce
Confidence 6778887 78888887764 3478899999999 78888776 778888875 455 333322 1222445567
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899 247 WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD 326 (407)
Q Consensus 247 ~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 326 (407)
..+ +++++++...++.|..||.. ++.+.++... ..+.++...++|..+ ++++.++.|..+|..+++.+-+
T Consensus 132 ~~~-~G~~lv~~~~~~~v~~~d~~-------G~~~w~~~~~-~~~~~~~~~~~g~~~-v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 132 KNK-KGNYLVPLFATSEVREIAPN-------GQLLNSVKLS-GTPFSSAFLDNGDCL-VACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp ECT-TSCEEEEETTTTEEEEECTT-------SCEEEEEECS-SCCCEEEECTTSCEE-EECBTTSEEEEECTTTCCEEEE
T ss_pred ECC-CCCEEEEecCCCEEEEECCC-------CCEEEEEECC-CCccceeEcCCCCEE-EEeCCCCeEEEEeCcCCcEEEE
Confidence 788 89999999999999999986 5888888764 345678888999854 5777788999999998888766
Q ss_pred ccc
Q 046899 327 YGE 329 (407)
Q Consensus 327 ~~~ 329 (407)
+..
T Consensus 202 ~~~ 204 (276)
T 3no2_A 202 VNA 204 (276)
T ss_dssp EEG
T ss_pred ecC
Confidence 653
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.18 E-value=1e-10 Score=102.07 Aligned_cols=150 Identities=11% Similarity=-0.037 Sum_probs=116.4
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEeecc-cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-Ccce
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLGHE-DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADI 242 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v 242 (407)
..+++++.++.+.+||.++++.+-.+..+. ..+.++.+.|+| ++++ +.++.|..||. +++ .+..+... ...+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~~ 79 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGR--ELWNIAAPAGCEM 79 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSC--EEEEEECCTTCEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCC--EEEEEcCCCCccc
Confidence 346778889999999999999998888765 478899999999 7777 45788999998 677 56666554 3578
Q ss_pred EEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecC------CCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 243 HCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
.++.+.+ +++++++.+. ++.|..+|. . ++.+.++.. +......+++.++|.++ ++...++.|..
T Consensus 80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~------Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l-v~~~~~~~v~~ 150 (276)
T 3no2_A 80 QTARILP-DGNALVAWCGHPSTILEVNM-K------GEVLSKTEFETGIERPHAQFRQINKNKKGNYL-VPLFATSEVRE 150 (276)
T ss_dssp EEEEECT-TSCEEEEEESTTEEEEEECT-T------SCEEEEEEECCSCSSGGGSCSCCEECTTSCEE-EEETTTTEEEE
T ss_pred cccEECC-CCCEEEEecCCCCEEEEEeC-C------CCEEEEEeccCCCCcccccccCceECCCCCEE-EEecCCCEEEE
Confidence 8899999 8999998877 778888876 3 677666542 22245567889999955 68888999999
Q ss_pred EeCCCCCcccccccC
Q 046899 316 WDHEKIGEKQDYGEL 330 (407)
Q Consensus 316 wd~~~~~~~~~~~~~ 330 (407)
||.. ++.+-++...
T Consensus 151 ~d~~-G~~~w~~~~~ 164 (276)
T 3no2_A 151 IAPN-GQLLNSVKLS 164 (276)
T ss_dssp ECTT-SCEEEEEECS
T ss_pred ECCC-CCEEEEEECC
Confidence 9998 7877766553
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.17 E-value=4.9e-10 Score=111.91 Aligned_cols=254 Identities=7% Similarity=-0.056 Sum_probs=136.2
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCC-----CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDS-----PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
|...+..++|+| ++++||.+..+ .+|++||+.+++........... .-..|..+ ....+........
T Consensus 161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~------~~~~wspD-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKF------SGLAWLGN-DALLYSRFAEPKE 232 (741)
T ss_dssp --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEES------CCCEESTT-SEEEEEECCCC--
T ss_pred CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCcee------ccEEEECC-CEEEEEEecCccc
Confidence 444788999999 88888776543 35999999988754321110000 00012111 0000000000000
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCc--eeeEee--cccCEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCC
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGA--RGKYLG--HEDTVEDVQFCPSSAQEFCSVGDD-----SCLILWDARSG 227 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~--~~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 227 (407)
+ ...........+.+|++.++.. ...+.. +...+..+.|+|+| ++|+..+.+ ..|.+||+.++
T Consensus 233 ----~---~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 233 ----G---QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp -------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETT
T ss_pred ----c---cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCC
Confidence 0 0000001122355666655442 222322 22358899999999 566655543 38999999876
Q ss_pred CCCceeeecccCcceEEEEecCCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCC-cee-eecCCCCCEEEEEEcCCCC
Q 046899 228 STPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD----NSIHMFDRRKLTSDGVGS-PIH-KFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 228 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d----g~i~vwd~~~~~~~~~~~-~~~-~~~~h~~~v~~v~~~~~~~ 301 (407)
.......+..+...+.... +| ++..|+..+.+ +.|.+||+.. +. ... .+..+...+..++|+ +.
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~------~~~~~~~l~~~~~~~l~~~~~~--~~ 374 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSG------STPRFDTVVPESKDNLESVGIA--GN 374 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSS------SSCEEEEEECCCSSEEEEEEEE--BT
T ss_pred CCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCC------CccccEEEecCCCCeEEEEEEE--CC
Confidence 2111233334444444443 47 67777766653 4599999876 31 223 334455567778887 34
Q ss_pred CEEEEeeCCCeEEEEeCC-CCCccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceee----eEEEeeeEEE
Q 046899 302 SVFGSSAEDGILNIWDHE-KIGEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV----CLTMVKVLEI 375 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~----~~~~d~~i~i 375 (407)
+++++...|+..+||.+. .++....+.. ....+..+.+++| +..|+ +....++|++
T Consensus 375 ~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d------------------~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 375 RLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPG------------------DRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBT------------------CSCEEEEEEETTEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCC------------------CCEEEEEEcCCCCCCEEEE
Confidence 477788999988887654 3344444432 2344555666665 44444 3334569999
Q ss_pred eecc
Q 046899 376 WRMI 379 (407)
Q Consensus 376 wd~~ 379 (407)
||+.
T Consensus 437 ~d~~ 440 (741)
T 1yr2_A 437 LDPA 440 (741)
T ss_dssp EETT
T ss_pred EECC
Confidence 9986
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.16 E-value=5.1e-09 Score=92.89 Aligned_cols=231 Identities=9% Similarity=0.063 Sum_probs=138.7
Q ss_pred eCCCceEEEEEeCCCCeEEEE-------eeCCCcEEEEeCcCCCCccccc----CcCC------CCCC-C-------CCc
Q 046899 81 IHPGEVNRIRELPQNSKIVAT-------HTDSPDVLIWDVEAQPNRHAVL----GAAD------SHPD-L-------DQS 135 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~t-------g~~dg~i~vwd~~~~~~~~~~~----~~~~------~~~~-~-------d~~ 135 (407)
..-....+++|.+ +++++++ +..++.|.+||..+++...... ++.. ..++ . ...
T Consensus 15 ~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp CCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred ccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 3445678899987 7788888 6778899999987665432111 0000 0111 1 234
Q ss_pred EEEEecccccccc-ccCCC-----CCcccccCCCCCccccccCC---------------CCCCCCCCCCcCceeeEeecc
Q 046899 136 VVLWSIQDHVSAL-AAEPG-----SAKSTASGGANSKNASKSGG---------------NGDKPLESPSIGARGKYLGHE 194 (407)
Q Consensus 136 i~~w~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~---------------~~i~i~d~~~~~~~~~~~~~~ 194 (407)
+.+|+.......+ ..... ....+.........++...+ +.+..++.. ++. ..+..+.
T Consensus 94 l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~ 171 (314)
T 1pjx_A 94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVDTAF 171 (314)
T ss_dssp EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEEEEE
T ss_pred EEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEeccCC
Confidence 5566655211111 11000 01111111112223332222 344455544 333 2333344
Q ss_pred cCEEEEEEC----CCCCcEEEEEeCCCcEEEEEcC-CCCCC---ceeeecccC-cceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 195 DTVEDVQFC----PSSAQEFCSVGDDSCLILWDAR-SGSTP---AVKVEKAHN-ADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 195 ~~v~~l~~~----~~~~~~l~s~~~dg~i~iwd~~-~~~~~---~~~~~~~~~-~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
.....++++ |++..++++...++.|.+||+. ++... ....+..+. ..+..+++++ +++++++...++.|.
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIE 250 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEE
Confidence 567889999 9883345555678999999986 33210 112222333 5678899999 888888877889999
Q ss_pred EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
+||.++ ++.+..+..+...+.+++|+|++..|+++...++.|..|++...
T Consensus 251 ~~d~~~------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 251 VFGPDG------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EECTTC------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEcCCC------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 999986 56667777676789999999999877777777789999998753
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.14 E-value=2.2e-08 Score=88.01 Aligned_cols=223 Identities=8% Similarity=-0.031 Sum_probs=134.9
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCC------CCC--------CCcEEEEecccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSH------PDL--------DQSVVLWSIQDHVS 146 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~------~~~--------d~~i~~w~~~~~~~ 146 (407)
....+.+|.+.+ ++++.++...++.|.+||.. ++.... +....... ++. ++.+..++......
T Consensus 18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFT 95 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred CCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeE
Confidence 456788999888 78888877778899999987 432221 11000000 000 34566666552222
Q ss_pred ccccC--CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 046899 147 ALAAE--PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD 223 (407)
Q Consensus 147 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 223 (407)
.+... ......+.........++...++.+..++.. ++.... +......+.++++.+++ +++++...++.|..+|
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEEC
Confidence 12111 1111112222222334444445667777766 443321 22234678999999998 6777766678999999
Q ss_pred cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCCC
Q 046899 224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKSS 302 (407)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~ 302 (407)
. +++. ...........+.++++++ ++++.++....+.|.+||.. ++... .+..+...+.+++++++|.
T Consensus 174 ~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~i~~d~~g~- 242 (300)
T 2qc5_A 174 N-TGKL-EEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTT-------GEISEYDIPTPNARPHAITAGKNSE- 242 (300)
T ss_dssp T-TCCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-------CCEEEEECSSTTCCEEEEEECSTTC-
T ss_pred C-CCcE-EEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCC-------CcEEEEECCCCCCCceEEEECCCCC-
Confidence 8 4541 1112223445688999999 78877776667889999983 33332 2333456789999999988
Q ss_pred EEEEeeCCCeEEEEeCC
Q 046899 303 VFGSSAEDGILNIWDHE 319 (407)
Q Consensus 303 ll~s~~~d~~i~vwd~~ 319 (407)
|+++...++.|..||..
T Consensus 243 l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 243 IWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEeccCCCeEEEECCC
Confidence 66666667899999984
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.13 E-value=1.6e-10 Score=114.64 Aligned_cols=199 Identities=7% Similarity=-0.093 Sum_probs=123.7
Q ss_pred ccCCCCCCCCCCCCcCce-eeEeecccCE--EEEEECCCCCcEEEEEeCCCc-------------EEEEEcCCCCCC--c
Q 046899 170 KSGGNGDKPLESPSIGAR-GKYLGHEDTV--EDVQFCPSSAQEFCSVGDDSC-------------LILWDARSGSTP--A 231 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~-~~~~~~~~~v--~~l~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~--~ 231 (407)
++.+..|++||+.+++.+ .. +...+ ..++|+|+| ..|+.++.|.. |++|++.++... .
T Consensus 143 G~~~~~i~v~dl~tg~~~~~~---~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l 218 (695)
T 2bkl_A 143 AADEAVLHVIDVDSGEWSKVD---VIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV 218 (695)
T ss_dssp TCSCCEEEEEETTTCCBCSSC---CBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE
T ss_pred CCceEEEEEEECCCCCCcCCc---ccCcccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE
Confidence 445678999999988765 22 22222 678999999 67888877765 999999877622 2
Q ss_pred eeeecccCcceEEEEecCCCCCEEEEEeCCC----cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADN----SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307 (407)
Q Consensus 232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg----~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~ 307 (407)
+.....+...+.++.|+| ++++|+.++.++ .|.++|... + ....+..+...+....+ ++|. +++++
T Consensus 219 v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~------~-~~~~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 219 VHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGE------K-DFRLLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp EECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTC------S-SCEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred EEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCC------C-ceEEeecCCCceEEEEe-cCCc-EEEEE
Confidence 233334556788999999 888888777665 666775543 3 34455555556666667 5677 66555
Q ss_pred e---CCCeEEEEeCCCCCc--ccccccC--CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 308 A---EDGILNIWDHEKIGE--KQDYGEL--KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 308 ~---~d~~i~vwd~~~~~~--~~~~~~~--~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
. .++.|.+||+.+++. .+.+..+ ...+..+++ . .+..+++...|+..+||.+.-
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~-----------------~--~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 289 DEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI-----------------V--GGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp CTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE-----------------E--TTEEEEEEEETTEEEEEEEET
T ss_pred CCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE-----------------E--CCEEEEEEEECCEEEEEEEeC
Confidence 4 358999999987643 1222222 222222222 1 245677888888888886641
Q ss_pred cccCChHHHHHHHhhc-ccceeEeecc
Q 046899 381 LIYRPEEEVLAELDKF-KSHIFGCDKS 406 (407)
Q Consensus 381 ~~~~~~~~~~~~~~~h-~~~v~~~~~s 406 (407)
.++.+..+..+ .+.|..+++|
T Consensus 350 -----~g~~~~~l~~~~~~~v~~~~~s 371 (695)
T 2bkl_A 350 -----KGKPVRTVQLPGVGAASNLMGL 371 (695)
T ss_dssp -----TCCEEEECCCSSSSEECCCBSC
T ss_pred -----CCCeeEEecCCCCeEEEEeecC
Confidence 12222223333 4556666655
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.10 E-value=2.6e-09 Score=102.44 Aligned_cols=200 Identities=8% Similarity=-0.031 Sum_probs=135.2
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN 174 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (407)
.+.++++...+++|.++|..+++.+..+..... +..+.+.+.|+ .+.+++.++
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~------------------------p~~v~~SpDGr---~lyv~~~dg 218 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA------------------------VHISRLSASGR---YLFVIGRDG 218 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC------------------------EEEEEECTTSC---EEEEEETTS
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC------------------------ccceEECCCCC---EEEEEcCCC
Confidence 456777888899999999998876655432111 00112222222 233445677
Q ss_pred CCCCCCCC--CcCceeeEeecccCEEEEEEC----CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc----------c
Q 046899 175 GDKPLESP--SIGARGKYLGHEDTVEDVQFC----PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA----------H 238 (407)
Q Consensus 175 ~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~ 238 (407)
.+.+||+. +++.+..+.... ....++|+ |+|..++++...+++|.++|..+.+ .+..+.. |
T Consensus 219 ~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~ 295 (567)
T 1qks_A 219 KVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYH 295 (567)
T ss_dssp EEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEE
T ss_pred eEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEEEEecccccccccccc
Confidence 88999985 777777776433 45799999 6984455555567999999998877 3443321 2
Q ss_pred Cc-ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 239 NA-DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 239 ~~-~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
.. .+..+..++....+++....+|.|.++|..... ...+..+. ......++.|+|++++++++...++.|.++|
T Consensus 296 p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 296 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVID 370 (567)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence 22 577888888445566666778999999998622 12233333 3456788999999999988887889999999
Q ss_pred CCCCCccccccc
Q 046899 318 HEKIGEKQDYGE 329 (407)
Q Consensus 318 ~~~~~~~~~~~~ 329 (407)
+.+++....+..
T Consensus 371 ~~t~kl~~~i~v 382 (567)
T 1qks_A 371 TKEGKLVAIEDT 382 (567)
T ss_dssp TTTTEEEEEEEC
T ss_pred CCCCcEEEEEec
Confidence 999876655543
No 201
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.09 E-value=9.7e-11 Score=105.74 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=70.1
Q ss_pred cCEEEEEECCCCCcEEEEEeCC---C--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC--------
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDD---S--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-------- 261 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-------- 261 (407)
..+..++|+|+| +.|+.++.+ + .|.+||+.+++ .. .+..+.. +..+.|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~--~~-~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLS--SK-KILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTE--EE-EEEEESE-EEEEEECT-TSSEEEEEEECCCC-----
T ss_pred ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCc--eE-EEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcE
Confidence 467889999999 666666543 3 37788887765 22 2233344 89999999 88888877632
Q ss_pred -------------------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899 262 -------------------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED 310 (407)
Q Consensus 262 -------------------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d 310 (407)
..|.+||+.. ++.+..+.. . .+..++|+|+| +++++..+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~------~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~ 190 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTES------EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHR 190 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTT------TEEEEEEEE-E-TTCEEEEETTE--EEEEEECC
T ss_pred EEcccceeecCcccccCccceEEEEECCC------CeEEeeecC-C-CcccccCCCCe--EEEEEecc
Confidence 5789999987 555355544 3 78899999999 44566544
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.08 E-value=6.3e-09 Score=96.05 Aligned_cols=203 Identities=11% Similarity=0.001 Sum_probs=120.6
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA 163 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 163 (407)
.....|+|.+ +++++++...++.|++||..++............ . ..|+.. +
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~------~-ia~~~~------------------g-- 182 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG------K-PAVTKD------------------K-- 182 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC------B-CEECTT------------------S--
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC------c-eeEecC------------------C--
Confidence 4678999998 8888888888899999999865433222111000 0 011111 1
Q ss_pred CCccccccCCC--CCCCCCCCCcCceeeE----eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee---
Q 046899 164 NSKNASKSGGN--GDKPLESPSIGARGKY----LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV--- 234 (407)
Q Consensus 164 ~~~~~~~~~~~--~i~i~d~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--- 234 (407)
..+..+..++ .+..++.........+ ......+.+++++|++..+++ +..++.|..||..++. ....
T Consensus 183 -~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~ 258 (409)
T 3hrp_A 183 -QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQL 258 (409)
T ss_dssp -SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEEC
T ss_pred -CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecc
Confidence 1111111211 3333443333222222 113456788999995425444 6678899999998765 2221
Q ss_pred -ecccCcce--EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC---------------CCCEEEEEE
Q 046899 235 -EKAHNADI--HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH---------------SAAVLCVQW 296 (407)
Q Consensus 235 -~~~~~~~v--~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~v~~ 296 (407)
..+....- ..++|+|.++.++++-...+.|+.|+... . +..+.++ -.....+++
T Consensus 259 ~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-------E-CEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-------C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-------C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 11222222 38999995566666767788999998764 2 3333222 135789999
Q ss_pred cCCCCCEEEEee-CCCeEEEEeCCCCCcccccc
Q 046899 297 SPDKSSVFGSSA-EDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 297 ~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~ 328 (407)
+|+|. |+++-+ .++.|+.||+..+. +..+.
T Consensus 331 d~dG~-lyvad~~~~~~I~~~~~~~G~-v~~~~ 361 (409)
T 3hrp_A 331 DEDGN-FYIVDGFKGYCLRKLDILDGY-VSTVA 361 (409)
T ss_dssp CTTCC-EEEEETTTTCEEEEEETTTTE-EEEEE
T ss_pred eCCCC-EEEEeCCCCCEEEEEECCCCE-EEEEe
Confidence 99998 777777 88999999977644 34333
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.04 E-value=8.7e-09 Score=101.99 Aligned_cols=253 Identities=12% Similarity=0.057 Sum_probs=137.7
Q ss_pred CCCceEEEEEeCCCCeEEEE-----eeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 82 HPGEVNRIRELPQNSKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~t-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
|...+..++|+| ++++||- |+...+|++||+.+++.+......... .-..|. +.....+......
T Consensus 127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~------~~~~Ws-Dg~~l~y~~~~~~-- 196 (693)
T 3iuj_A 127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKF------SGISWL-GNEGFFYSSYDKP-- 196 (693)
T ss_dssp SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEES------CCCEEE-TTTEEEEEESSCC--
T ss_pred CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCcee------ccEEEe-CCCEEEEEEecCc--
Confidence 556788899999 8887773 333457999999988754321110000 001233 2211111100000
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCc--eeeEe--e-cccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCC
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGA--RGKYL--G-HEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGS 228 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~--~-~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~ 228 (407)
.+ ...........+.+|++.+... ...+. . |...+..+.|+|++..++++.+. +..|.++|+.++.
T Consensus 197 ---~~---~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 197 ---DG---SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp ---C----------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred ---cc---ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 00 0000001123355566655432 22222 2 34457889999999545555543 3589999998764
Q ss_pred CCceeeecccCcceEEEEecCCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCCc--eeeecCCCCCEEEEEEcCCCCCE
Q 046899 229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---NSIHMFDRRKLTSDGVGSP--IHKFEGHSAAVLCVQWSPDKSSV 303 (407)
Q Consensus 229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l 303 (407)
.. ...+..+....... |++.++.+++....+ +.|..+|+.. +.. ...+..|...+. .|++++.+|
T Consensus 271 ~~-~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 271 AP-LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN------PGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp CC-CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS------CCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred Cc-eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC------CCccccEEEecCCCCEE--EEEEECCEE
Confidence 21 33444555555444 555244555555443 5799999987 333 456666666665 899999988
Q ss_pred EEEeeCCC--eEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe----eeEEEe
Q 046899 304 FGSSAEDG--ILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV----KVLEIW 376 (407)
Q Consensus 304 l~s~~~d~--~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~i~iw 376 (407)
+++...++ .|++||+... ....+. .....+..+.++++ +..++....+ ++|+.|
T Consensus 341 v~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d------------------~~~l~~~~ss~~tP~~l~~~ 401 (693)
T 3iuj_A 341 FAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHD------------------DPALYFGFENYAQPPTLYRF 401 (693)
T ss_dssp EEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTT------------------CSCEEEEEECSSSCCEEEEE
T ss_pred EEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCC------------------CCEEEEEecCCCCCCEEEEE
Confidence 76666665 6889998743 333332 12233445556555 4444433333 578888
Q ss_pred ecc
Q 046899 377 RMI 379 (407)
Q Consensus 377 d~~ 379 (407)
|+.
T Consensus 402 d~~ 404 (693)
T 3iuj_A 402 EPK 404 (693)
T ss_dssp CTT
T ss_pred ECC
Confidence 875
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.03 E-value=5.3e-08 Score=85.77 Aligned_cols=112 Identities=9% Similarity=0.065 Sum_probs=84.3
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CCCCC---ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--SGSTP---AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
.+....+.++|+|++..++++.+.++.|..||+. ++... ....+..+......+++++ ++++.++....+.|..
T Consensus 146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~ 224 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIR 224 (297)
T ss_dssp EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEE
T ss_pred eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEE
Confidence 3445568999999995456677778999999984 44310 1112223345678899999 8888888777889999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEc-CCCCCEEEEeeCC
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS-PDKSSVFGSSAED 310 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~ll~s~~~d 310 (407)
||..+ ++.+..+..+...+++++|. |+++.|+++...+
T Consensus 225 ~d~~t------G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 225 LDPVT------GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp ECTTT------CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EcCCC------ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 99988 78888888777789999998 8988888777654
No 205
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.99 E-value=4.9e-08 Score=87.24 Aligned_cols=217 Identities=11% Similarity=0.014 Sum_probs=123.4
Q ss_pred eEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC
Q 046899 86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS 165 (407)
Q Consensus 86 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (407)
..+..|+|+++.+++++..++.|..||..++... .|........+.. .+.|.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------~~~~~~~v~~i~~-------~~dg~--- 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT------------------VHALPFMGSALAK-------ISDSK--- 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE------------------EEECSSCEEEEEE-------EETTE---
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE------------------EEECCCcceEEEE-------eCCCe---
Confidence 4677899966888888888899999998765321 1111110000000 11111
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEee----cccCEEEEEECCCCCcEEEEEeC------CCcEEEEEcCCCCCCceeee
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLG----HEDTVEDVQFCPSSAQEFCSVGD------DSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~ 235 (407)
+..+.. ..+.+||..+++....... ....+++++++|+| +++++... .+.|..+| +++ ...+
T Consensus 103 -l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~---~~~~ 174 (326)
T 2ghs_A 103 -QLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGK---VTKL 174 (326)
T ss_dssp -EEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTE---EEEE
T ss_pred -EEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCc---EEEe
Confidence 111122 2256666655553222111 12368899999999 66655432 24455555 333 2222
Q ss_pred cccCcceEEEEecCCCCCEEEE-EeCCCcEEEEeCC--CC-CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899 236 KAHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRR--KL-TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~t-g~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~ 311 (407)
.........++|+| +++.++. .+.++.|.+||+. +. . ....+.+..+......+..++++++|. ++++...++
T Consensus 175 ~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~-~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~ 251 (326)
T 2ghs_A 175 FADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLP-TGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEG 251 (326)
T ss_dssp EEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCB-SSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTT
T ss_pred eCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCc-ccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCC
Confidence 23334567899999 7876644 4557899999986 31 0 000012233333445678999999997 555665678
Q ss_pred eEEEEeCCCCCcccccccCCCcccCCCCc-Cc
Q 046899 312 ILNIWDHEKIGEKQDYGELKYPIIHPAYS-SD 342 (407)
Q Consensus 312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d 342 (407)
.|.+||. .++.+..+......+++++|+ +|
T Consensus 252 ~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 252 AVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp EEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred EEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence 8999998 455555555444445666665 44
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.96 E-value=3.5e-07 Score=83.13 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=135.0
Q ss_pred EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCc-------------CCCCCCC----------CC
Q 046899 88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGA-------------ADSHPDL----------DQ 134 (407)
Q Consensus 88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~~~----------d~ 134 (407)
.+.++| +++.|+.+. .++.|.+||..+.+....+... ....++. +.
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence 899999 777777764 3678999999877655443221 0111111 35
Q ss_pred cEEEEeccccccccc-cCC-CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe-----ecccCE-EEEEECCCC
Q 046899 135 SVVLWSIQDHVSALA-AEP-GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL-----GHEDTV-EDVQFCPSS 206 (407)
Q Consensus 135 ~i~~w~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~v-~~l~~~~~~ 206 (407)
.|.++| .+...... ... .+..+.+.+. ..+++...++.+.+++. +++.+.... ....++ ....+.+++
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTCYHIHPGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCceEEEEeCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC
Confidence 577777 65433211 111 1111122221 12345567888888888 666553221 111121 234556665
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCceeeecc----------cCcceEEEEecCCCCCEEEEEeC----------CCcEEE
Q 046899 207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKA----------HNADIHCVDWNPHDVNLILTGSA----------DNSIHM 266 (407)
Q Consensus 207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~l~tg~~----------dg~i~v 266 (407)
..+++. +..+.+.+.|+..........+.. .......+.++| +++.++++.. .+.|.+
T Consensus 225 ~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 225 GRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCCCeEEE
Confidence 344444 367899999997654211222111 122334478899 7776666543 357999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCCCCccccc
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~ 327 (407)
+|..+ .+.+.++.. .....+++|+|+|+++++++. .++.|.++|+.+++.+..+
T Consensus 303 ID~~t------~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 303 VTGLV------GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCC------CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99998 788888864 345799999999994344555 6899999999998888773
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.94 E-value=3.9e-09 Score=93.65 Aligned_cols=200 Identities=11% Similarity=-0.036 Sum_probs=121.0
Q ss_pred ccCCCCCCCCCCCCcCceeeEe----ecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCCCceee-ec----ccC
Q 046899 170 KSGGNGDKPLESPSIGARGKYL----GHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGSTPAVKV-EK----AHN 239 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~----~~~ 239 (407)
...++.+..||..+++...... ++...+.+++++++ + +++++.. ++.|.+||.. ++ .... .. ...
T Consensus 42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~--~~~~~~~~~~~~~~ 116 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GT--FEEIAKKDSEGRRM 116 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SC--EEECCSBCTTSCBC
T ss_pred CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CC--EEEEEeccCCCccc
Confidence 3456778888877666432221 14467899999999 6 6555544 4579999987 55 2222 11 112
Q ss_pred cceEEEEecCCCCCEEEEEeCC---------------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc----CCC
Q 046899 240 ADIHCVDWNPHDVNLILTGSAD---------------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS----PDK 300 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~----~~~ 300 (407)
..+.++++++ +++++++...+ +.|..||... +.. .+..+......++|+ |++
T Consensus 117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-------~~~-~~~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-------QMI-QVDTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-------CEE-EEEEEESSEEEEEEEECTTSCE
T ss_pred cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCC-------CEE-EeccCCCCcceEEEecccCCCC
Confidence 3578999999 88877776654 4666676542 222 222233456899999 999
Q ss_pred CCEEEEeeCCCeEEEEeCC-CCC-----cccccccCC-CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899 301 SSVFGSSAEDGILNIWDHE-KIG-----EKQDYGELK-YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL 373 (407)
Q Consensus 301 ~~ll~s~~~d~~i~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i 373 (407)
+.++++...++.|.+||+. .++ ....+..+. ..+.+++++++ +...++...++.|
T Consensus 188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~------------------G~l~v~~~~~~~i 249 (314)
T 1pjx_A 188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED------------------NNLLVANWGSSHI 249 (314)
T ss_dssp EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT------------------CCEEEEEETTTEE
T ss_pred CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC------------------CCEEEEEcCCCEE
Confidence 7777677778999999976 222 111122111 22222333322 5555555567799
Q ss_pred EEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899 374 EIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407 (407)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 407 (407)
.+||.. +++.+..+..+...+.+++|++
T Consensus 250 ~~~d~~------~g~~~~~~~~~~~~~~~i~~~~ 277 (314)
T 1pjx_A 250 EVFGPD------GGQPKMRIRCPFEKPSNLHFKP 277 (314)
T ss_dssp EEECTT------CBSCSEEEECSSSCEEEEEECT
T ss_pred EEEcCC------CCcEeEEEeCCCCCceeEEECC
Confidence 999986 3444444445556778887753
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.93 E-value=3e-07 Score=80.53 Aligned_cols=222 Identities=9% Similarity=-0.056 Sum_probs=130.6
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC--cCCCC------CCC--------CCcEEEEeccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG--AADSH------PDL--------DQSVVLWSIQDHV 145 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~--~~~~~------~~~--------d~~i~~w~~~~~~ 145 (407)
+...+.++++.+ +++++++...++.|..||... .. ..+.. ..... ++. ++.+..++.....
T Consensus 55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~ 131 (299)
T 2z2n_A 55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKG-II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI 131 (299)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTS-CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE
T ss_pred ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCC-cE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE
Confidence 457799999888 788888877788899999762 21 11110 00000 000 3456666653222
Q ss_pred cccccC--CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899 146 SALAAE--PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW 222 (407)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 222 (407)
..+... ......+.........++....+.+..+|. +++.... .......+.++++++++ .++++...++.|..|
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEE
Confidence 211111 111111222222233343445567777777 5544322 22334568899999998 677776678899999
Q ss_pred EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce-eeecCCCCCEEEEEEcCCCC
Q 046899 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI-HKFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~ 301 (407)
|. ++.. .......+...+.++++++ +++++++...++.|..||.. +... ..+..+...+.++++ +++.
T Consensus 210 ~~-~g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~-------g~~~~~~~~~~~~~~~~i~~-~~g~ 278 (299)
T 2z2n_A 210 TT-SGEI-TEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTSN-------NIIEEYPIQIKSAEPHGICF-DGET 278 (299)
T ss_dssp CT-TCCE-EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEETT-------TEEEEEECSSSSCCEEEEEE-CSSC
T ss_pred CC-CCcE-EEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECCC-------CceEEEeCCCCCCccceEEe-cCCC
Confidence 98 5552 1122233456789999999 78877766678899999983 3322 123345567999999 8887
Q ss_pred CEEEEeeCCCeEEEEeCCCC
Q 046899 302 SVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~ 321 (407)
|+++.+ .+.+..+|.++.
T Consensus 279 -l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 279 -IWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp -EEEEET-TTEEEEEEEC--
T ss_pred -EEEEec-CCcEEEEEcCcc
Confidence 554444 567777787653
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.92 E-value=1.6e-08 Score=91.20 Aligned_cols=232 Identities=11% Similarity=0.053 Sum_probs=137.4
Q ss_pred EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCcC-------------CCCCCC----------CC
Q 046899 88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGAA-------------DSHPDL----------DQ 134 (407)
Q Consensus 88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~----------d~ 134 (407)
.++++| +++.|..+. .++.|.+||..+.+....+.... ...++. ++
T Consensus 82 ~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 399999 676665554 35789999999988666543211 111111 45
Q ss_pred cEEEEeccccccccccCCCCC-cccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeec----ccCEE-EEEEC-CCC
Q 046899 135 SVVLWSIQDHVSALAAEPGSA-KSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGH----EDTVE-DVQFC-PSS 206 (407)
Q Consensus 135 ~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~v~-~l~~~-~~~ 206 (407)
.+.++|+.+....-.....+. ...+.+ ...+++.+.||++.+.+... ++.......+ ..++. ...|. ++|
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~~~~~P~g--~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDCYHIFPTA--PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEE--TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred eEEEEECCCCcEEEEEECCCcceeecCC--CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 677777776633222211110 111111 12234556677776666654 3432211111 11221 23553 566
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCceeeec----------ccCcceEEEEecCCCCCEEEEEeC----------CCcEEE
Q 046899 207 AQEFCSVGDDSCLILWDARSGSTPAVKVEK----------AHNADIHCVDWNPHDVNLILTGSA----------DNSIHM 266 (407)
Q Consensus 207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~~~~l~tg~~----------dg~i~v 266 (407)
.+++ .+.+|.|.+.|+............ -.......+++++ +++.++.... ...|.+
T Consensus 239 -~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 239 -RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp -EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred -cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEE
Confidence 5444 556899999999765421111111 0122334577788 6666666532 257999
Q ss_pred EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC-CEEEEeeCCCeEEEEeCCCCCcccccccCCC
Q 046899 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGILNIWDHEKIGEKQDYGELKY 332 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 332 (407)
+|+.+ ++.+.++.. ...+.+++++++++ .|+++...++.|.++|..+++.+.++.....
T Consensus 316 iD~~t------~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 316 LDAKT------GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp EETTT------CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred EECCC------CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 99999 888888864 34788999999997 5665566799999999999998888765444
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.92 E-value=1.3e-07 Score=86.07 Aligned_cols=187 Identities=8% Similarity=-0.057 Sum_probs=113.7
Q ss_pred CCCCCCCCCCCCcCceeeEeec-------ccCEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCCCceee-ecccCcc
Q 046899 172 GGNGDKPLESPSIGARGKYLGH-------EDTVEDVQFCPSSAQEFCSVGD--DSCLILWDARSGSTPAVKV-EKAHNAD 241 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~-~~~~~~~ 241 (407)
.++.+.++|..+++.+..+.-. ...-..++|+|+| ++|+.++. ++.|.++| .+++ .... +. ....
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~--~~~~~i~-~~~~ 169 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGS--SDDQLLS-SPTC 169 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCC--EEeEEcC-CCce
Confidence 3567788888888777665422 1234589999999 66666653 58899999 8877 3444 32 2221
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC------------------------CC------------------C-
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD------------------------GV------------------G- 278 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~------------------------~~------------------~- 278 (407)
+.+.|...+.+++.+.||.+.++|. ..... +. .
T Consensus 170 ---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~ 245 (373)
T 2mad_H 170 ---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG 245 (373)
T ss_pred ---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence 2333323344455555666666655 21000 00 0
Q ss_pred -CceeeecC----------CCCCEEEEEEcCCCCCEEEEee---------CCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899 279 -SPIHKFEG----------HSAAVLCVQWSPDKSSVFGSSA---------EDGILNIWDHEKIGEKQDYGELKYPIIHPA 338 (407)
Q Consensus 279 -~~~~~~~~----------h~~~v~~v~~~~~~~~ll~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 338 (407)
..+..+.. .......++++|++.+++++.. .++.|.++|+.+.+.+.++.... ...++.
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~ 324 (373)
T 2mad_H 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAIS 324 (373)
T ss_pred ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEE
Confidence 00011100 0112334788999888876543 24689999999988888875433 467888
Q ss_pred CcCcchhccccceeeeeEeeCccc-eeeeEE-EeeeEEEeeccccccCChHHHHHH
Q 046899 339 YSSDMLDIETKLLTSIGMHLIHGR-LLVCLT-MVKVLEIWRMIDLIYRPEEEVLAE 392 (407)
Q Consensus 339 ~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 392 (407)
|++| +. .++++. .++.|.|+|.. +++.++.
T Consensus 325 ~s~D------------------g~~~l~v~~~~~~~V~ViD~~------t~~vv~~ 356 (373)
T 2mad_H 325 VAQD------------------GGPDLYALSAGTEVLHIYDAG------AGDQDQS 356 (373)
T ss_pred ECCC------------------CCeEEEEEcCCCCeEEEEECC------CCCEEee
Confidence 9888 66 566665 58899999998 6666655
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.88 E-value=8.6e-08 Score=84.78 Aligned_cols=160 Identities=11% Similarity=-0.003 Sum_probs=105.0
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
+...........|+|+...+++++..++.|..|+.. +.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~----------------------------------------- 77 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT----------------------------------------- 77 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-----------------------------------------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-----------------------------------------
Confidence 334556678899999444488888888899999763 21
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 238 (407)
...+..+...+..++++++| +++++...++.|..||.. ++ ........
T Consensus 78 ----------------------------~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~--~~~~~~~~ 125 (305)
T 3dr2_A 78 ----------------------------VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQ--AHLLVGRY 125 (305)
T ss_dssp ----------------------------EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEECEE
T ss_pred ----------------------------EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CC--EEEEEecc
Confidence 01122234567899999998 666665566889999975 44 12111111
Q ss_pred ----CcceEEEEecCCCCCEEEE----EeC-------------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899 239 ----NADIHCVDWNPHDVNLILT----GSA-------------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297 (407)
Q Consensus 239 ----~~~v~~l~~~~~~~~~l~t----g~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 297 (407)
...++.++++| ++++.++ |.. .+.|..+|... ++..... .......++|+
T Consensus 126 ~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~------g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 126 AGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG------SPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp TTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS------CCCEEEE--EESSEEEEEEC
T ss_pred CCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC------CcEEEEe--cCCCCcceEEc
Confidence 13467899999 8888886 432 25677888765 4433322 33467899999
Q ss_pred CCCCCEEEEeeC-----CCeEEEEeCCCC
Q 046899 298 PDKSSVFGSSAE-----DGILNIWDHEKI 321 (407)
Q Consensus 298 ~~~~~ll~s~~~-----d~~i~vwd~~~~ 321 (407)
|+++.|+++.+. .+.|.+||+...
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 999977655443 278999998754
No 212
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.82 E-value=2.2e-07 Score=79.38 Aligned_cols=207 Identities=7% Similarity=-0.004 Sum_probs=137.4
Q ss_pred eeeEEEeeCCCc--eEEEEEeCCCCeEEEEeeC--CCcEEEEeCcCCCCcccccCcCCCCCCCCCc-EEEEecccccccc
Q 046899 74 VKKFKTIIHPGE--VNRIRELPQNSKIVATHTD--SPDVLIWDVEAQPNRHAVLGAADSHPDLDQS-VVLWSIQDHVSAL 148 (407)
Q Consensus 74 ~~~~~~~~h~~~--v~~l~~~~~~~~~l~tg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~-i~~w~~~~~~~~~ 148 (407)
.+....+.|... ...|.|+| ++.+.++.+. ++.|++.|..+++....+....... +. +.+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f----geGi~~---------- 73 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF----GEGLTL---------- 73 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC----EEEEEE----------
T ss_pred ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc----eEEEEE----------
Confidence 345666778864 68999998 5777666553 5799999999988766543211110 00 000
Q ss_pred ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899 149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS 228 (407)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 228 (407)
.+ .....+.-.++.+.++|..+++.+.++...... ...+++++..++ .+..++.|.++|..+.+
T Consensus 74 -----------~g--~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~-vs~gs~~l~viD~~t~~ 137 (266)
T 2iwa_A 74 -----------LN--EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILY-GSDGTSILYEIDPHTFK 137 (266)
T ss_dssp -----------ET--TEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEE-EECSSSEEEEECTTTCC
T ss_pred -----------eC--CEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEE-EECCCCeEEEEECCCCc
Confidence 01 012233445667778888888888877532121 123445664445 44568899999998877
Q ss_pred CCceeeec--ccCc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-------------CCC
Q 046899 229 TPAVKVEK--AHNA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-------------SAA 290 (407)
Q Consensus 229 ~~~~~~~~--~~~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------------~~~ 290 (407)
....+. .... .++.+.|. ++.+.+....++.|.+.|..+ ++.+..+... ...
T Consensus 138 --v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t------g~V~~~I~~~g~~~~~~~~~~~~~~v 207 (266)
T 2iwa_A 138 --LIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD------GTLLGWILLPNLRKKLIDEGFRDIDV 207 (266)
T ss_dssp --EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT------CCEEEEEECHHHHHHHHHTTCTTCCC
T ss_pred --EEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC------CcEEEEEECCCcccccccccccccCc
Confidence 333332 1222 36678887 456666665688999999999 8888877632 135
Q ss_pred EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
.+.|+|+|+++.+|+++...+.+.+.++...
T Consensus 208 ~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 208 LNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred eEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 6899999999999999999999999998764
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.80 E-value=1.9e-06 Score=76.85 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=79.4
Q ss_pred ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CC-CCC---ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--SG-STP---AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH 265 (407)
Q Consensus 192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~-~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~ 265 (407)
.+....+.++|+|++..++++.+.++.|.+||+. ++ ... ....+.........+++++ ++++.++...++.|.
T Consensus 176 ~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 176 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVD 254 (326)
T ss_dssp EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEE
T ss_pred CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEE
Confidence 3344678999999994445565667899999986 44 311 1112222345567899999 788777766678899
Q ss_pred EEeCCCCCCCCCCCceeeecCCCCCEEEEEEc-CCCCCEEEEeeCCC
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS-PDKSSVFGSSAEDG 311 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~ll~s~~~d~ 311 (407)
+||. . ++.+..+..+...+++++|+ +++..|+++...++
T Consensus 255 ~~d~-~------g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 255 RYDT-D------GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EECT-T------CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EECC-C------CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 9998 4 57777777777789999998 88887876665553
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.78 E-value=1.5e-08 Score=101.26 Aligned_cols=121 Identities=9% Similarity=0.050 Sum_probs=79.3
Q ss_pred cccCEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc----
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS---- 263 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~---- 263 (407)
|...+..++|+|+| ++|+.++.+ ..|++||+.+++ .... ..+...+..++|+| | +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 161 GATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGK--PLAD-ELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp --EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCC--EEEE-EEEEEESCCCEEST-T-SEEEEEECCCC----
T ss_pred CCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCC--CCCc-cCCCceeccEEEEC-C-CEEEEEEecCccccc
Confidence 33467899999999 666655443 359999999887 3222 12222235789999 7 88877776554
Q ss_pred ----------EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC----CCeEEEEeCCCC
Q 046899 264 ----------IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE----DGILNIWDHEKI 321 (407)
Q Consensus 264 ----------i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~----d~~i~vwd~~~~ 321 (407)
|++|++.+.... ...+.....+...+..+.|+|||++|+.++.. ...|.+||+.++
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~--~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSA--DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGG--CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred ccccCCCCCEEEEEECCCCchh--CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 889998762100 01233333344468999999999987644432 348999999875
No 215
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.77 E-value=2.9e-10 Score=103.57 Aligned_cols=179 Identities=8% Similarity=-0.028 Sum_probs=93.5
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc-ceE-
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA-DIH- 243 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~- 243 (407)
.+.+++.++.+..||..+++.+-.+.. +.+.+..+..++ .++++++.||.|+.||..+++ .......+.. .+.
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~--~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNE--GLTKLPFTIPELVQA 85 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----C--CSEECSCCHHHHHTT
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCc--eeeeeeccCcccccc
Confidence 456677788899999999998877765 445555555666 577788899999999998887 3333322211 110
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
+..+. .+..+++|+.|+.|+.||.++ ++.+..+..+. ...++|++..+ ++++.|+.|+.||.++++.
T Consensus 86 sp~~~--~~~~v~~g~~dg~v~a~D~~t------G~~~w~~~~~~----~~~~~p~~~~v-~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 86 SPCRS--SDGILYMGKKQDIWYVIDLLT------GEKQQTLSSAF----ADSLSPSTSLL-YLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp CSCC-------CCCCEEEEEEEEECCC--------------------------------E-EEEEEEEEEECCCSSSSSC
T ss_pred CceEe--cCCEEEEEeCCCEEEEEECCC------CcEEEEecCCC----cccccccCCEE-EEEecCCEEEEEECCCCCE
Confidence 01111 235677888899999999998 88887776543 24556777756 4788899999999999876
Q ss_pred ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+-.+.... ...+.++.+. .....++.++.++.|+.||..
T Consensus 153 ~W~~~~~~--~~~~~~~~~~---------------~~~~~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 153 RWNATYFD--YAASLPEDDV---------------DYKMSHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp CCEEEEEE--ECCBCCCCCT---------------TCCCCEEEEETSCEEEEECTT
T ss_pred EEeEeccc--ccCccccCCc---------------cccceEEEECCCCEEEEEECC
Confidence 65543211 1122222210 012456677778888888876
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.76 E-value=3.3e-08 Score=91.21 Aligned_cols=142 Identities=9% Similarity=0.030 Sum_probs=94.8
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeee----cccC
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVE----KAHN 239 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~----~~~~ 239 (407)
.+++...++.|+.||...+........ ..... ++|+|++ ..|+++..++ .|.++|...... .... ....
T Consensus 144 lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~~~ 218 (409)
T 3hrp_A 144 VLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGSTFS 218 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTTSC
T ss_pred EEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce--eEEeeeccchhc
Confidence 345555667888888877665444433 22233 9999999 6777777655 799999876552 2222 2144
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-----cCCCCCE--EEEEEcCCCCCEEEEeeCCCe
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-----EGHSAAV--LCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~h~~~v--~~v~~~~~~~~ll~s~~~d~~ 312 (407)
..+.+++++| +...|+.+..++.|+.||... .. ...+ .++...- ..++|+|++..|+++-..++.
T Consensus 219 ~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~ 290 (409)
T 3hrp_A 219 GKIGAVALDE-TEEWLYFVDSNKNFGRFNVKT------QE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS 290 (409)
T ss_dssp SCCCBCEECT-TSSEEEEECTTCEEEEEETTT------CC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred CCcEEEEEeC-CCCeEEEEECCCcEEEEECCC------CC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence 5678899999 445555577788999999986 33 2222 1222222 399999976668878888899
Q ss_pred EEEEeCCC
Q 046899 313 LNIWDHEK 320 (407)
Q Consensus 313 i~vwd~~~ 320 (407)
|+.|+...
T Consensus 291 I~~~~~~g 298 (409)
T 3hrp_A 291 VYKITPDG 298 (409)
T ss_dssp EEEECTTC
T ss_pred EEEEecCC
Confidence 99999764
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.76 E-value=2.8e-07 Score=83.14 Aligned_cols=227 Identities=9% Similarity=-0.043 Sum_probs=131.6
Q ss_pred EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCc--C-----------CCCCCC----------CC
Q 046899 88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGA--A-----------DSHPDL----------DQ 134 (407)
Q Consensus 88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~--~-----------~~~~~~----------d~ 134 (407)
.+.++| +++.+..+. .++.|.+||..+.+....+... . ...++. ..
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 799999 666666664 3678999999999877766422 0 011111 12
Q ss_pred cEEE--EeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC-----cCcee----eEeecccCEEEEEEC
Q 046899 135 SVVL--WSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS-----IGARG----KYLGHEDTVEDVQFC 203 (407)
Q Consensus 135 ~i~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~----~~~~~~~~v~~l~~~ 203 (407)
.+.+ +|..+ ...+.. +.+....+.+. ..+.+.+.++.+.+.+... ++... .+.-...+. . .
T Consensus 148 ~v~V~~iD~~t-v~~i~v-~~~~~~~p~g~--~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 148 AAGLSVPGASD-DQLTKS-ASCFHIHPGAA--ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A 219 (368)
T ss_dssp EEEEEETTTEE-EEEEEC-SSCCCCEEEET--TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred eEEEEEEchhh-ceEEEC-CCceEEccCCC--eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence 3444 44443 111111 11111112221 1233455666666666654 32221 111122333 3 4
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc-------c---CcceEEEEecCCCCCEEEEEeC---------CCcE
Q 046899 204 PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA-------H---NADIHCVDWNPHDVNLILTGSA---------DNSI 264 (407)
Q Consensus 204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~---~~~v~~l~~~~~~~~~l~tg~~---------dg~i 264 (407)
+++.. ++..+. +.|.+.|+..........+.. + ......+.++| +++.++.+.. ++.+
T Consensus 220 ~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 220 NYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp TTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEE
T ss_pred ccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCE
Confidence 55534 444445 899999987543111111110 1 11112268999 7776665432 2356
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCCCCcccccccCCCc
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEKIGEKQDYGELKYP 333 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~ 333 (407)
.++|+.+ .+.+.++.... ....++|+|+|++++++.. .+++|.++|+.+++.+.++.....|
T Consensus 297 ~ViD~~t------~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 297 SSVTASV------GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EEEESSS------CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred EEEECCC------CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 6999999 78888887543 6899999999998888888 6999999999999988888765543
No 218
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.75 E-value=2.2e-06 Score=75.03 Aligned_cols=220 Identities=8% Similarity=-0.030 Sum_probs=127.5
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCC------CCC--------CCcEEEEecccccc
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSH------PDL--------DQSVVLWSIQDHVS 146 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~------~~~--------d~~i~~w~~~~~~~ 146 (407)
+...+.+|++.+ ++++.++...++.|..+|.. ++.... ........ ++. ++.+..++......
T Consensus 60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~ 137 (300)
T 2qc5_A 60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY 137 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE
Confidence 346789999887 77888777767889999987 433211 11000000 000 34455555542221
Q ss_pred ccccC--CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899 147 ALAAE--PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILW 222 (407)
Q Consensus 147 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 222 (407)
.+... ......+.........++...++.+..++. .++... +. .+...+..+++.+++ +++++....+.|..|
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEE
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEE
Confidence 11111 111111222222223333444566777776 444332 22 234568899999988 777776677889999
Q ss_pred EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce-eeecCCCCCEEEEEEcCCCC
Q 046899 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI-HKFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~ 301 (407)
|. ++.. ...........+.++++++ ++++.++...++.|..||.. +... ..+......+.++++.++|.
T Consensus 215 ~~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~i~~~~~g~ 284 (300)
T 2qc5_A 215 TT-TGEI-SEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITND-------NTIQEYQLQTENAEPHGITFGKDGS 284 (300)
T ss_dssp CT-TCCE-EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-------SCEEEEECCSTTCCCCCEEECTTSC
T ss_pred cC-CCcE-EEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECCC-------CcEEEEECCccCCccceeEeCCCCC
Confidence 98 4441 1222233456688999999 78877776667899999984 3322 22333445689999999988
Q ss_pred CEEEEeeCCCeEEEEeCC
Q 046899 302 SVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~ 319 (407)
|+++.. . .|..+|.+
T Consensus 285 -l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 285 -VWFALK-C-KIGKLNLN 299 (300)
T ss_dssp -EEEECS-S-EEEEEEEC
T ss_pred -EEEEcc-C-ceEEeCCC
Confidence 554444 4 77777653
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.74 E-value=8e-07 Score=79.95 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=76.6
Q ss_pred cccCEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCCCCCCceeeecc------cCcceEEEEecCCCCCEEEEEe--
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGD-----DSCLILWDARSGSTPAVKVEKA------HNADIHCVDWNPHDVNLILTGS-- 259 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~l~tg~-- 259 (407)
+...+..+++++++ +++++-.. ++.|.+||+.+++ ....+.. +...+..+++++.++..+++..
T Consensus 65 ~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 65 TFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred ceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 45678999999998 66665543 5789999998876 3333321 2245688999983444455554
Q ss_pred -CCCcEEEEeCCCCCCCCCCCceeeecCC-----------------------------CCCEEEEEEcCCCCCEEEEeeC
Q 046899 260 -ADNSIHMFDRRKLTSDGVGSPIHKFEGH-----------------------------SAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 260 -~dg~i~vwd~~~~~~~~~~~~~~~~~~h-----------------------------~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
.++.|.+||+.+ ++..+.+..| ...+..|+|+|+++.|+++...
T Consensus 142 ~~~~~i~v~d~~~------g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 142 DDKAALIRVDLQT------GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp GGGCEEEEEETTT------CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred CCCCeEEEEECCC------CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence 578999999876 4444433221 1236889999999877644444
Q ss_pred CCeEEEEeC
Q 046899 310 DGILNIWDH 318 (407)
Q Consensus 310 d~~i~vwd~ 318 (407)
...+..++.
T Consensus 216 ~~~l~~~~~ 224 (343)
T 2qe8_A 216 STSMYRIKS 224 (343)
T ss_dssp CSEEEEEEH
T ss_pred CCeEEEEEH
Confidence 445555553
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.71 E-value=2.2e-07 Score=85.35 Aligned_cols=228 Identities=10% Similarity=0.038 Sum_probs=131.6
Q ss_pred EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCc-------------CCCCCCC----------CC
Q 046899 88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGA-------------ADSHPDL----------DQ 134 (407)
Q Consensus 88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~~~----------d~ 134 (407)
.+.++| +++.|..+. .++.|.++|..+.+....+... ....++. ++
T Consensus 122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 899999 666665554 3678999999998776554321 0111111 34
Q ss_pred cEEEEeccccccccccCCCC-CcccccCCCCCccccccCCCCCCCCCCCCcCceee----EeecccCE-EEEEECCCCCc
Q 046899 135 SVVLWSIQDHVSALAAEPGS-AKSTASGGANSKNASKSGGNGDKPLESPSIGARGK----YLGHEDTV-EDVQFCPSSAQ 208 (407)
Q Consensus 135 ~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~v-~~l~~~~~~~~ 208 (407)
.|.+.|+.+....-...... ....+.+. ..+++.+.+|.+.+.+...++.... +.....++ ..+.+.+++ .
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~ 277 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDCYHIFPASP--TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS-G 277 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEET--TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT-C
T ss_pred eEEEEECCCCeEEEEEEcCCceeeccCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC-C
Confidence 56666666543211111111 01111121 2233444566655555544433311 11111111 134678887 4
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCceeeec-------c---cCcceEEEEecCCCCCEEEEEeC----------CCcEEEEe
Q 046899 209 EFCSVGDDSCLILWDARSGSTPAVKVEK-------A---HNADIHCVDWNPHDVNLILTGSA----------DNSIHMFD 268 (407)
Q Consensus 209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~---~~~~v~~l~~~~~~~~~l~tg~~----------dg~i~vwd 268 (407)
.++..+..+.|.+.|+..........+. . .......+.++| ++..+++... ++.|.++|
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCCEEEEEE
Confidence 4445567889999998755411111100 0 111222368899 6666555432 35799999
Q ss_pred CCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC-CEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
..+ .+.+.++... .....++|+|+|+ .++++...++.|.++|+.+.+.+.++
T Consensus 357 ~~T------~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 357 AET------GERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTT------CCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCC------CeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999 8888888642 3579999999999 66655546999999999999988876
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.70 E-value=6e-07 Score=79.27 Aligned_cols=130 Identities=8% Similarity=0.048 Sum_probs=81.7
Q ss_pred CEEEEEECCCCCcEEEE----EeC-------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899 196 TVEDVQFCPSSAQEFCS----VGD-------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
.++.+++.|+| +++++ |.. .+.|..+|..+++. ... . .....+.++|+| +++.|+.+
T Consensus 132 ~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~-~-~~~~p~gl~~sp-dg~~lyv~ 205 (305)
T 3dr2_A 132 SPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRM-A-DLDHPNGLAFSP-DEQTLYVS 205 (305)
T ss_dssp CCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEE-E-EESSEEEEEECT-TSSEEEEE
T ss_pred CCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEE-e-cCCCCcceEEcC-CCCEEEEE
Confidence 45678899988 66665 332 25677777766652 222 2 334568899999 88877777
Q ss_pred eCC------CcEEEEeCCCCCCCCCCCc--eeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 259 SAD------NSIHMFDRRKLTSDGVGSP--IHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 259 ~~d------g~i~vwd~~~~~~~~~~~~--~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
... +.|.+||+.. ... ...+ .........++++++|. |+ .+..+ .|.+||.. ++.+..+..
T Consensus 206 ~~~~~~~~~~~i~~~~~~~------~~l~~~~~~~~~~~~~pdgi~~d~~G~-lw-v~~~~-gv~~~~~~-g~~~~~~~~ 275 (305)
T 3dr2_A 206 QTPEQGHGSVEITAFAWRD------GALHDRRHFASVPDGLPDGFCVDRGGW-LW-SSSGT-GVCVFDSD-GQLLGHIPT 275 (305)
T ss_dssp ECCC---CCCEEEEEEEET------TEEEEEEEEECCSSSCCCSEEECTTSC-EE-ECCSS-EEEEECTT-SCEEEEEEC
T ss_pred ecCCcCCCCCEEEEEEecC------CCccCCeEEEECCCCCCCeEEECCCCC-EE-EecCC-cEEEECCC-CCEEEEEEC
Confidence 665 7899999875 221 1111 11234456789999998 55 34444 49999984 455555544
Q ss_pred CCCcccCCCCcCc
Q 046899 330 LKYPIIHPAYSSD 342 (407)
Q Consensus 330 ~~~~v~~~~~s~d 342 (407)
.. .+..++|+++
T Consensus 276 ~~-~~~~~~f~~d 287 (305)
T 3dr2_A 276 PG-TASNCTFDQA 287 (305)
T ss_dssp SS-CCCEEEECTT
T ss_pred CC-ceeEEEEeCC
Confidence 33 3556666654
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.69 E-value=8e-08 Score=94.46 Aligned_cols=187 Identities=12% Similarity=0.101 Sum_probs=119.8
Q ss_pred CCCCCCCCCCCcCceeeEeeccc--------------------------------CEEEEEECCCCCcEEEEEeCCC---
Q 046899 173 GNGDKPLESPSIGARGKYLGHED--------------------------------TVEDVQFCPSSAQEFCSVGDDS--- 217 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~~~~~--------------------------------~v~~l~~~~~~~~~l~s~~~dg--- 217 (407)
++.+..+|..+++.+-.+..... ....++++|++ .+++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccc
Confidence 67888899999988766543211 11256788887 6777776654
Q ss_pred ----------------cEEEEEcCCCCCCceeeecc--cC-------cceEEEEecCCCC---CEEEEEeCCCcEEEEeC
Q 046899 218 ----------------CLILWDARSGSTPAVKVEKA--HN-------ADIHCVDWNPHDV---NLILTGSADNSIHMFDR 269 (407)
Q Consensus 218 ----------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~---~~l~tg~~dg~i~vwd~ 269 (407)
.|..+|.++++ ....++. |. .....+.... ++ ..++.++.+|.++++|.
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~ 344 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDR 344 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEET
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEEC
Confidence 59999999998 4444332 21 1222333334 55 68899999999999999
Q ss_pred CCCCCCCCCCceeeecCCC-----------CCE------------------------EEEEEcCCCCCEEEEee------
Q 046899 270 RKLTSDGVGSPIHKFEGHS-----------AAV------------------------LCVQWSPDKSSVFGSSA------ 308 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~-----------~~v------------------------~~v~~~~~~~~ll~s~~------ 308 (407)
++ ++++..+.... .++ ..++++|++..+++...
T Consensus 345 ~t------G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (677)
T 1kb0_A 345 TN------GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNL 418 (677)
T ss_dssp TT------CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEE
T ss_pred CC------CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceee
Confidence 98 88776654211 111 15688888875653322
Q ss_pred ------------------------------------CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccccee
Q 046899 309 ------------------------------------EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLT 352 (407)
Q Consensus 309 ------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 352 (407)
..+.|..||+.+++.+-.+.. ..++.+..++.+
T Consensus 419 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~---------- 487 (677)
T 1kb0_A 419 MDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTA---------- 487 (677)
T ss_dssp EECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEET----------
T ss_pred ecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeC----------
Confidence 127788999988776544432 223233222222
Q ss_pred eeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 353 SIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 353 ~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
+..++.++.|+.+++||.. +++++.++.
T Consensus 488 --------g~~v~~g~~dg~l~a~D~~------tG~~lw~~~ 515 (677)
T 1kb0_A 488 --------GNVVFQGTADGRLVAYHAA------TGEKLWEAP 515 (677)
T ss_dssp --------TTEEEEECTTSEEEEEETT------TCCEEEEEE
T ss_pred --------CCEEEEECCCCcEEEEECC------CCceeeeee
Confidence 5577788899999999998 676665554
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.68 E-value=1.8e-07 Score=92.11 Aligned_cols=174 Identities=10% Similarity=0.049 Sum_probs=99.7
Q ss_pred EEEEeeCCCcEEEEeCcCCCCcccccCcCC----------CC---C----------CCCCcEEEEeccccccccccCCC-
Q 046899 98 IVATHTDSPDVLIWDVEAQPNRHAVLGAAD----------SH---P----------DLDQSVVLWSIQDHVSALAAEPG- 153 (407)
Q Consensus 98 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~----------~~---~----------~~d~~i~~w~~~~~~~~~~~~~~- 153 (407)
.|..++.++.|..+|..+++.+-....... .. + ..|+.+..+|..++.........
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~ 151 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA 151 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcC
Confidence 455556677888888887765433321110 00 0 01778888888776543222111
Q ss_pred ------CCcccccCCCCCcccccc------CCCCCCCCCCCCcCceeeEeec----------------------------
Q 046899 154 ------SAKSTASGGANSKNASKS------GGNGDKPLESPSIGARGKYLGH---------------------------- 193 (407)
Q Consensus 154 ------~~~~~~~~~~~~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~---------------------------- 193 (407)
.....+.- ....+..+. .++.+..+|..+++.+-.+...
T Consensus 152 ~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~ 230 (689)
T 1yiq_A 152 DHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQ 230 (689)
T ss_dssp CTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHH
T ss_pred CCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeec
Confidence 01111100 011122222 3678888999998877555410
Q ss_pred ---ccCEEEEEECCCCCcEEEEEeCCCc-------------------EEEEEcCCCCCCceeeecc--cC-------cce
Q 046899 194 ---EDTVEDVQFCPSSAQEFCSVGDDSC-------------------LILWDARSGSTPAVKVEKA--HN-------ADI 242 (407)
Q Consensus 194 ---~~~v~~l~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~--~~-------~~v 242 (407)
...-..++++|+. .+++.++.++. |..+|.++++ ....++. |. .++
T Consensus 231 ~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 231 GGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE--YVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp CEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC--EEEEEESSTTCCSCCCCCSCE
T ss_pred CCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc--eeEeeecCCcccccccCCCCc
Confidence 0011257788877 67888887764 9999999998 4444432 21 122
Q ss_pred EEEEecCCCCC---EEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899 243 HCVDWNPHDVN---LILTGSADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 243 ~~l~~~~~~~~---~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
....... ++. .++.++.+|.++++|.++ ++++.
T Consensus 308 ~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~l~ 343 (689)
T 1yiq_A 308 ILAELPI-DGKPRKVLMQAPKNGFFYVIDRAT------GELLS 343 (689)
T ss_dssp EEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEE
T ss_pred EEEeecc-CCcEEEEEEEECCCCeEEEEECCC------CCEec
Confidence 2222222 444 788999999999999998 77764
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.67 E-value=3.2e-08 Score=90.09 Aligned_cols=208 Identities=7% Similarity=-0.031 Sum_probs=107.3
Q ss_pred CCeEEEEeeCCCcEEEEeCcCCCCcccccCc-CCCCC-----------CCCCcEEEEeccccccccccCCCC---Ccccc
Q 046899 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGA-ADSHP-----------DLDQSVVLWSIQDHVSALAAEPGS---AKSTA 159 (407)
Q Consensus 95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~-----------~~d~~i~~w~~~~~~~~~~~~~~~---~~~~~ 159 (407)
++..+++++.||.|..||..+++.+-.+... ....+ ..|+.+..||..++.......... ....+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 4567888999999999999988765443321 00000 117889999987654322211110 00011
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
.-..+..+.+++.++.+..||..+++.+..+..+. ...++|.+ ..+++++.|+.|+.||.++++. ...+..+.
T Consensus 88 ~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~--~W~~~~~~ 160 (369)
T 2hz6_A 88 CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTREL--RWNATYFD 160 (369)
T ss_dssp CC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSC--CCEEEEEE
T ss_pred eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCCE--EEeEeccc
Confidence 10022345667788999999999999877766543 23456666 6788889999999999999873 33322111
Q ss_pred cceEEEEecCCCC---CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE-EEEEcCCCCCEE----EEeeCCC
Q 046899 240 ADIHCVDWNPHDV---NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL-CVQWSPDKSSVF----GSSAEDG 311 (407)
Q Consensus 240 ~~v~~l~~~~~~~---~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~ll----~s~~~d~ 311 (407)
.....+++ +. ..+++++.||.|+.||.++ ++.+.++... .++. ...+++++. +. +.+ ++
T Consensus 161 --~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~t------G~~~W~~~~~-~pv~~~~~~~~dg~-~~v~~~~~~--~~ 227 (369)
T 2hz6_A 161 --YAASLPED-DVDYKMSHFVSNGDGLVVTVDSES------GDVLWIQNYA-SPVVAFYVWQREGL-RKVMHINVA--VE 227 (369)
T ss_dssp --ECCBCCCC-CTTCCCCEEEEETSCEEEEECTTT------CCEEEEEECS-SCEEEEEECTTSSC-EEECCEEEE--HH
T ss_pred --ccCccccC-CccccceEEEECCCCEEEEEECCC------CcEEEEecCC-CceEEEEEecCCce-Eeccceeec--cc
Confidence 12223333 21 4567788999999999998 8888877643 4443 345555653 21 112 34
Q ss_pred eEEEEeCCCCC
Q 046899 312 ILNIWDHEKIG 322 (407)
Q Consensus 312 ~i~vwd~~~~~ 322 (407)
.+..+|..+++
T Consensus 228 ~l~~ld~~tG~ 238 (369)
T 2hz6_A 228 TLRYLTFMSGE 238 (369)
T ss_dssp HHHHHHHHHHH
T ss_pred ceeeeehhcCC
Confidence 56666665544
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.65 E-value=2.1e-07 Score=83.83 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=76.4
Q ss_pred cCEEEEEECCCCCcEEEEEe---CCCcEEEEEcCCCCCCceeeeccc-----------------------------Ccce
Q 046899 195 DTVEDVQFCPSSAQEFCSVG---DDSCLILWDARSGSTPAVKVEKAH-----------------------------NADI 242 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~v 242 (407)
..+..++++|++...+++.. .++.|.+||+.+++ .......| ...+
T Consensus 120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~ 197 (343)
T 2qe8_A 120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGV 197 (343)
T ss_dssp CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCE
T ss_pred cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceeccc
Confidence 34578888876535666665 67899999998765 23322221 1236
Q ss_pred EEEEecCCCCCEEEEEeCCC-cEEEEeCCCCCCC--CCCCcee--eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 243 HCVDWNPHDVNLILTGSADN-SIHMFDRRKLTSD--GVGSPIH--KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg-~i~vwd~~~~~~~--~~~~~~~--~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
..|+|+| +++.|+.+..++ .+..++....... ...+... ...++......++++++|. |+++...++.|.+||
T Consensus 198 ~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 198 NGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEE
T ss_pred ceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEE
Confidence 8899999 888888877666 5555553210000 0000000 1112344567899999987 677888899999999
Q ss_pred CCCC
Q 046899 318 HEKI 321 (407)
Q Consensus 318 ~~~~ 321 (407)
..++
T Consensus 276 ~~~G 279 (343)
T 2qe8_A 276 SADR 279 (343)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8444
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.64 E-value=2.8e-06 Score=77.35 Aligned_cols=245 Identities=10% Similarity=-0.013 Sum_probs=142.3
Q ss_pred eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC--CC----------CCCcEEEEeccccccccccCCCCCcc-----cc
Q 046899 97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH--PD----------LDQSVVLWSIQDHVSALAAEPGSAKS-----TA 159 (407)
Q Consensus 97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~----------~d~~i~~w~~~~~~~~~~~~~~~~~~-----~~ 159 (407)
..+..++.++.|..+|..+++.+-......... +. .++.+..+|..++............. ..
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 183 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA 183 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence 456677888999999999887653332221111 10 16778888877664332221111000 00
Q ss_pred cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC----EE---EEEECC--CCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899 160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT----VE---DVQFCP--SSAQEFCSVGDDSCLILWDARSGSTP 230 (407)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----v~---~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~ 230 (407)
.......+..+..++.+..+|..+++.+-........ +. .+.-.| .+ ..++.++.++.+..+|.++++
T Consensus 184 ~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~-- 260 (376)
T 3q7m_A 184 PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQ-- 260 (376)
T ss_dssp CEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTCC--
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCc--
Confidence 0001233555677888888998888876555422110 00 011111 13 467777889999999999888
Q ss_pred ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CCCCEEEEEEcCCCCCEEEEeeC
Q 046899 231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
...... ......+.. ++..++.++.++.+..+|.++ ++.+..... ....+...... + ..|+ .++.
T Consensus 261 ~~w~~~--~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~-~-~~l~-v~~~ 326 (376)
T 3q7m_A 261 IMWKRE--LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG------GVTLWTQSDLLHRLLTSPVLY-N-GNLV-VGDS 326 (376)
T ss_dssp EEEEEC--CCCEEEEEE---ETTEEEEEETTCCEEEEETTT------CCEEEEECTTTTSCCCCCEEE-T-TEEE-EECT
T ss_pred EEeecc--CCCCCCceE---ECCEEEEEcCCCeEEEEECCC------CcEEEeecccCCCcccCCEEE-C-CEEE-EEeC
Confidence 343332 223344444 345777788899999999998 777766652 22222223332 3 3354 7788
Q ss_pred CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899 310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR 377 (407)
Q Consensus 310 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd 377 (407)
+|.+.++|..+++.+..+......+..... . .++.|+.++.+|.|+.|+
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~----------------~---~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPV----------------A---ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCE----------------E---ETTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCE----------------E---ECCEEEEEeCCCEEEEEe
Confidence 999999999998776555433332222111 1 155778888888888886
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.62 E-value=1.7e-06 Score=78.76 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=95.4
Q ss_pred cCCCCCCCCCCCCcCceeeEeeccc---CEEEEEECCCCCcEEEEEe-------------------CCCcEEEEEcCCCC
Q 046899 171 SGGNGDKPLESPSIGARGKYLGHED---TVEDVQFCPSSAQEFCSVG-------------------DDSCLILWDARSGS 228 (407)
Q Consensus 171 ~~~~~i~i~d~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~ 228 (407)
...+.+.++|..+++.+.++..... .-..+.|+|++ +.+++.. .+.+|.+||+.+++
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 4457888999999998888863222 23457889999 6777774 36899999999865
Q ss_pred CCceeeecc--cCcceEEEEe--cCCCCCEEEEEe------CCCcEEEEeCCCCCCCCCCCceeee--cC----------
Q 046899 229 TPAVKVEKA--HNADIHCVDW--NPHDVNLILTGS------ADNSIHMFDRRKLTSDGVGSPIHKF--EG---------- 286 (407)
Q Consensus 229 ~~~~~~~~~--~~~~v~~l~~--~~~~~~~l~tg~------~dg~i~vwd~~~~~~~~~~~~~~~~--~~---------- 286 (407)
....+.. .......+.| +| +++++++++ .++.|.+|.... . ..+....+ ..
T Consensus 240 --~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~-g---~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 240 --RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYED-G---KWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp --EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEET-T---EEEEEEEEEECCEECCSSCCGG
T ss_pred --EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecC-C---ceeEEEEEeCCCcccccccccc
Confidence 4444432 1123445555 99 788777766 456887665432 0 01111111 00
Q ss_pred ------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 287 ------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 287 ------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
-......|.+++||++|+++.-..+.|.++|+..
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0235788999999999999998899999999863
No 228
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=1.6e-06 Score=73.15 Aligned_cols=193 Identities=10% Similarity=0.091 Sum_probs=124.1
Q ss_pred eeeEEEeeCCCce--EEEEEeCCCCeEEEEeeCCC--cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 74 VKKFKTIIHPGEV--NRIRELPQNSKIVATHTDSP--DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 74 ~~~~~~~~h~~~v--~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
.+..+...|...- ..|.|+ ++.++.+.+.+| .|+++|+.+++....+........ .-+.++
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fg---eGit~~---------- 95 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFG---EGISDW---------- 95 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCE---EEEEEE----------
T ss_pred eEEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccce---eEEEEe----------
Confidence 3455667788665 889887 467888887766 899999999887665432211100 001110
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
+ +......-.++.+.++|..+.+.+.++...... ..++ +++ ..|+.+..++.|.++|..+.+
T Consensus 96 -----------g--~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg-~~L~~SdGs~~i~~iDp~T~~- 157 (262)
T 3nol_A 96 -----------K--DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HND-QYLIMSDGTPVLRFLDPESLT- 157 (262)
T ss_dssp -----------T--TEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECS-SCEEECCSSSEEEEECTTTCS-
T ss_pred -----------C--CEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--cCC-CEEEEECCCCeEEEEcCCCCe-
Confidence 0 011222335667778888888888888643221 2444 455 344444457889999999877
Q ss_pred Cceeeecc--cC---cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC------------CCCEE
Q 046899 230 PAVKVEKA--HN---ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH------------SAAVL 292 (407)
Q Consensus 230 ~~~~~~~~--~~---~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h------------~~~v~ 292 (407)
....+.. .. ..++.+.|. ++.+.+..-.+..|.+.|.++ ++.+..+... ....+
T Consensus 158 -v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t------G~V~~~Id~~~L~~~~~~~~~~~~vlN 228 (262)
T 3nol_A 158 -PVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET------GKVTGIIDLNGILAEAGPLPSPIDVLN 228 (262)
T ss_dssp -EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT------CBEEEEEECTTGGGGSCSCCSSCCCEE
T ss_pred -EEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC------CcEEEEEECCcCccccccccCcCCceE
Confidence 3444322 22 334567776 566666665788999999999 8887777542 23579
Q ss_pred EEEEcCCCCCEEEEee
Q 046899 293 CVQWSPDKSSVFGSSA 308 (407)
Q Consensus 293 ~v~~~~~~~~ll~s~~ 308 (407)
.|||+|+++.||+||-
T Consensus 229 GIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 229 GIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEETTTTEEEEEET
T ss_pred EEEEcCCCCEEEEECC
Confidence 9999999998998874
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.61 E-value=7.5e-06 Score=70.62 Aligned_cols=116 Identities=5% Similarity=-0.096 Sum_probs=79.0
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC---CCcEEEEeCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA---DNSIHMFDRRKL 272 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~ 272 (407)
....++++|++..++++-...+.|.++++.... ..............++++| ++..|+.+.. .+.|..+++..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg- 155 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDG- 155 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTS-
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCC-
Confidence 457899998764677777778899999987543 1222222224568999999 5454444443 36888888764
Q ss_pred CCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 273 TSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 273 ~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
.....+. ..-.....+++++++.+|+++-...+.|.++|+...
T Consensus 156 ------~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 156 ------TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp ------CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred ------CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence 2223332 223467899999998888888888899999999754
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.54 E-value=7e-07 Score=79.54 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=97.9
Q ss_pred CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEE
Q 046899 165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHC 244 (407)
Q Consensus 165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 244 (407)
..+..++.++.+..+|.. ++....+..+...+.++...+++ . +..++.++.|..+|.. ++ ...........+.+
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GT--EKWRFKTNDAITSA 181 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SC--EEEEEECSSCCCSC
T ss_pred CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CC--EeEEEecCCCceee
Confidence 334556667788888877 66665555555556677777777 4 6667788999999988 65 34444444555667
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
+...+ ++.+.+ ++ +.|..+| .+ ++.+..+......+.++...++|. |+ .++.++.+..+|. +++..
T Consensus 182 ~~~d~-~g~l~v-~t--~~l~~~d-~~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 182 ASIGK-DGTIYF-GS--DKVYAIN-PD------GTEKWNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp CEECT-TCCEEE-ES--SSEEEEC-TT------SCEEEEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEE
T ss_pred eEEcC-CCEEEE-Ee--CEEEEEC-CC------CcEEEEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEe
Confidence 77776 666544 44 7899999 55 677777766667788899988886 54 5666788888874 44444
Q ss_pred ccc
Q 046899 325 QDY 327 (407)
Q Consensus 325 ~~~ 327 (407)
..+
T Consensus 248 ~~~ 250 (330)
T 3hxj_A 248 WRF 250 (330)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.51 E-value=2.8e-07 Score=91.16 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=111.2
Q ss_pred CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC-------------cEEEEEcCCCCCC--ceeeec
Q 046899 172 GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS-------------CLILWDARSGSTP--AVKVEK 236 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg-------------~i~iwd~~~~~~~--~~~~~~ 236 (407)
....|+++|+.+++.+.... +......++|+ ++ +.|+.++.+. .|++|++.+.... .+....
T Consensus 153 ~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 229 (693)
T 3iuj_A 153 DWREIHLMDVESKQPLETPL-KDVKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI 229 (693)
T ss_dssp CEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred ceEEEEEEECCCCCCCcccc-CCceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence 34578889998887654321 11113577899 88 5666666663 4999999876521 222223
Q ss_pred c-cCcceEEEEecCCCCCEEEEEeC----CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-
Q 046899 237 A-HNADIHCVDWNPHDVNLILTGSA----DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED- 310 (407)
Q Consensus 237 ~-~~~~v~~l~~~~~~~~~l~tg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d- 310 (407)
. |...+..+.|+| ++++|+.... ...|+++|+.... .....+..+....... |+++|..+++.+..+
T Consensus 230 ~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~ 302 (693)
T 3iuj_A 230 PAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQEN-----APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDA 302 (693)
T ss_dssp GGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTT-----CCCEEEECSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred CCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCC-----CceEEEeCCCCceEEE-EeccCCEEEEEECCCC
Confidence 3 455678899999 8887754332 3589999998721 2455666666665555 667777676666554
Q ss_pred --CeEEEEeCCCCCc--ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecc
Q 046899 311 --GILNIWDHEKIGE--KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMI 379 (407)
Q Consensus 311 --~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~ 379 (407)
+.|..+|+.++.. .+.+..+...+. .|+++ ++.|+....+. .|++|++.
T Consensus 303 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~------------------g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 303 PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG------------------SGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE------------------TTEEEEEEEETTEEEEEEECTT
T ss_pred CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE------------------CCEEEEEEEECCeeEEEEEECC
Confidence 6899999987654 233433433332 55544 55566555444 78888875
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=7.2e-06 Score=69.24 Aligned_cols=191 Identities=6% Similarity=-0.042 Sum_probs=125.7
Q ss_pred eeEEEeeCCCce--EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899 75 KKFKTIIHPGEV--NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152 (407)
Q Consensus 75 ~~~~~~~h~~~v--~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~ 152 (407)
+..+.+.|...- ..|.|. ++.+..+.+.+|.|+++|+.+++....+.....+. .| +.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~Fg---eG-it~-------------- 103 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFA---EG-LAS-------------- 103 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCE---EE-EEE--------------
T ss_pred EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcce---eE-EEE--------------
Confidence 455666787554 788886 46888888999999999999998776551111000 00 000
Q ss_pred CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232 (407)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 232 (407)
.+ .........++.+.++|..+++.+.++..... -..++ +++ ..|+.+..++.|.++|..+.+ ..
T Consensus 104 -------~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~--v~ 168 (268)
T 3nok_A 104 -------DG--ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWN-GKLVRSDGGTMLTFHEPDGFA--LV 168 (268)
T ss_dssp -------CS--SCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EET-TEEEEECSSSEEEEECTTTCC--EE
T ss_pred -------eC--CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCC-CEEEEECCCCEEEEEcCCCCe--EE
Confidence 00 01122334567778888888888888864322 23444 456 445555568999999999887 34
Q ss_pred eeec--ccCc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-------------CCCEEEE
Q 046899 233 KVEK--AHNA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-------------SAAVLCV 294 (407)
Q Consensus 233 ~~~~--~~~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------------~~~v~~v 294 (407)
..+. .+.. .++.+.|. ++.+.+..-.+..|.+.|.++ ++.+..+... ..-.+.|
T Consensus 169 ~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T------G~V~~~Idl~~L~~~~~~~~~~~~~vlNGI 240 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT------GTVVGVIDASALTRAVAGQVTNPEAVLNGI 240 (268)
T ss_dssp EEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT------CBEEEEEECHHHHHHHTTTCCCTTCCEEEE
T ss_pred EEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC------CcEEEEEECCCCcccccccccCcCCceEEE
Confidence 4332 2322 34677876 566666655688999999999 8887776531 2467999
Q ss_pred EEcCCCCCEEEEee
Q 046899 295 QWSPDKSSVFGSSA 308 (407)
Q Consensus 295 ~~~~~~~~ll~s~~ 308 (407)
||+|++..||+||-
T Consensus 241 A~dp~~~rlfVTGK 254 (268)
T 3nok_A 241 AVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCCEEEEET
T ss_pred EEcCCCCEEEEeCC
Confidence 99999998998874
No 233
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.48 E-value=2e-06 Score=77.56 Aligned_cols=132 Identities=9% Similarity=-0.015 Sum_probs=96.2
Q ss_pred CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe----------CCCcEEEEEcCCCCCCceeeeccc----
Q 046899 173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG----------DDSCLILWDARSGSTPAVKVEKAH---- 238 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~---- 238 (407)
++.+.++|..+++.+..+.....+ . ++++|++ +.+++++ .++.|.+||..+.+ ....+...
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r 132 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPR 132 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCccc
Confidence 467888899999988888765555 4 9999999 4454443 36789999999987 44443211
Q ss_pred ---CcceEEEEecCCCCCEEEEEeC--CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 239 ---NADIHCVDWNPHDVNLILTGSA--DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 239 ---~~~v~~l~~~~~~~~~l~tg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
......+.++| ++++++++.. ++.|.++|+.+ ++.+.++.... . ....|.+...|++.+.||++
T Consensus 133 ~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t------~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~ 201 (386)
T 3sjl_D 133 FLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEG------KAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSL 201 (386)
T ss_dssp CCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTT------TEEEEEEECCS--E--EEEEEEETTEEEEEETTSCE
T ss_pred cccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCC------CcEEEEEECCC--c--ceeecCCCceeEEECCCCCE
Confidence 12456789999 8998888764 68999999999 88888886422 1 22335554455688889999
Q ss_pred EEEeCCC
Q 046899 314 NIWDHEK 320 (407)
Q Consensus 314 ~vwd~~~ 320 (407)
-+.++..
T Consensus 202 ~~v~~~~ 208 (386)
T 3sjl_D 202 AKVAFGT 208 (386)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999986
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.47 E-value=1.6e-06 Score=81.70 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=119.4
Q ss_pred ccCCCCCCCCCCCCcCceeeEee-cccCEEEEEE-C-CCCCcEEEEEe------------------CCCcEEEEEcCCCC
Q 046899 170 KSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQF-C-PSSAQEFCSVG------------------DDSCLILWDARSGS 228 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~-~-~~~~~~l~s~~------------------~dg~i~iwd~~~~~ 228 (407)
...+..+.+.|+.+++....+.- .......+++ . |++ .++++++ .++.+.+.|..+.+
T Consensus 108 d~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~ 186 (595)
T 1fwx_A 108 DKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE 186 (595)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE
T ss_pred cCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEEEEECCCCe
Confidence 44566688899999887775532 2345778887 4 888 5555553 34689999998876
Q ss_pred CCceeeecccCcceEEEEecCCCCCEEEEEeCCC--------------------------------------cEEEEeCC
Q 046899 229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--------------------------------------SIHMFDRR 270 (407)
Q Consensus 229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--------------------------------------~i~vwd~~ 270 (407)
......--. ....++++| +++++++.+.+. .|.+.|.+
T Consensus 187 --v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~ 262 (595)
T 1fwx_A 187 --VAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR 262 (595)
T ss_dssp --EEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS
T ss_pred --EEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc
Confidence 444433222 345678899 788888777553 36666666
Q ss_pred CCCCCCCCCc-eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc------------ccccccCCCcccCC
Q 046899 271 KLTSDGVGSP-IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE------------KQDYGELKYPIIHP 337 (407)
Q Consensus 271 ~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~------------~~~~~~~~~~v~~~ 337 (407)
+.. ++. +..+..- ....++.++|||+++++++..+.+|.++|+.+.+. ....+ -.....++
T Consensus 263 ~~~----~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 263 KEA----SSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp GGG----CCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred ccC----CceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 411 123 4445432 24578999999999999999999999999997531 11222 12233455
Q ss_pred CCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 338 AYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 338 ~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+|++| +...++.-.|+.|.+||+.
T Consensus 337 aF~~d------------------G~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 337 AFDGR------------------GNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp EECTT------------------SEEEEEETTTTEEEEEEHH
T ss_pred EECCC------------------CeEEEEEecCCcEEEEEhh
Confidence 66665 6445566778899999986
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.46 E-value=1.4e-05 Score=72.63 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=138.8
Q ss_pred eEEEEeeCCCcEEEEeCcCCCCcccccCcCC---------CC---C----------CCCCcEEEEeccccccccccCCCC
Q 046899 97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAAD---------SH---P----------DLDQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~---------~~---~----------~~d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
..+..++.++.|..+|..+++.+-....... .. + ..++.+..+|..++..........
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 3566666778888888887765433222110 00 0 006777778877664432221111
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCE-----EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTV-----EDVQFCPSSAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
............+..++.++.+..+|..+++.+-.+....... ...... + ..++.++.++.|..+|..+++
T Consensus 134 ~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~- 209 (376)
T 3q7m_A 134 EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQ- 209 (376)
T ss_dssp CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCC-
T ss_pred ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCc-
Confidence 1000000112345556778888899998888776665322111 111221 2 357778889999999999887
Q ss_pred CceeeecccCc--c--eEE---EEecC-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC
Q 046899 230 PAVKVEKAHNA--D--IHC---VDWNP-HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301 (407)
Q Consensus 230 ~~~~~~~~~~~--~--v~~---l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 301 (407)
.......... . +.. +...| ..+..++.++.++.+..+|.++ ++.+..... .....+... +.
T Consensus 210 -~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t------G~~~w~~~~--~~~~~~~~~--~~ 278 (376)
T 3q7m_A 210 -MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS------GQIMWKREL--GSVNDFIVD--GN 278 (376)
T ss_dssp -EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT------CCEEEEECC--CCEEEEEEE--TT
T ss_pred -EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC------CcEEeeccC--CCCCCceEE--CC
Confidence 3333321110 0 000 00111 0235677788899999999998 787766653 334455543 44
Q ss_pred CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.++ .++.++.|..+|..+++.+-......... ..++ .. .++.|+.++.+|.|+++|..
T Consensus 279 ~l~-~~~~~g~l~~~d~~tG~~~w~~~~~~~~~---~~~~-------------~~---~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 279 RIY-LVDQNDRVMALTIDGGVTLWTQSDLLHRL---LTSP-------------VL---YNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp EEE-EEETTCCEEEEETTTCCEEEEECTTTTSC---CCCC-------------EE---ETTEEEEECTTSEEEEEETT
T ss_pred EEE-EEcCCCeEEEEECCCCcEEEeecccCCCc---ccCC-------------EE---ECCEEEEEeCCCeEEEEECC
Confidence 464 67778999999999887654433211111 0001 11 14567778888889999876
No 236
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.44 E-value=2.7e-05 Score=65.15 Aligned_cols=194 Identities=10% Similarity=0.117 Sum_probs=124.2
Q ss_pred eeeEEEeeCCCc--eEEEEEeCCCCeEEEEeeCCC--cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899 74 VKKFKTIIHPGE--VNRIRELPQNSKIVATHTDSP--DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA 149 (407)
Q Consensus 74 ~~~~~~~~h~~~--v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~ 149 (407)
.+.+...+|... ...|.|.+ +.++.+.+.+| .|++.|+.+++....+........ .-+.++
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg---eGi~~~---------- 73 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG---AGIVAW---------- 73 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE---EEEEEE----------
T ss_pred eEEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce---eEEEEe----------
Confidence 345566678754 66999876 67777777754 899999999887665432211100 001111
Q ss_pred cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899 150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST 229 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 229 (407)
+ +........++.+.++|..+.+.+.++...... ..++ +++..+++| ..++.|.++|..+.+
T Consensus 74 -----------~--~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vS-dgs~~l~~iDp~t~~- 135 (243)
T 3mbr_X 74 -----------R--DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMS-DGTAVIRKLDPDTLQ- 135 (243)
T ss_dssp -----------T--TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEE-CSSSEEEEECTTTCC-
T ss_pred -----------C--CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEE-CCCCeEEEEeCCCCe-
Confidence 0 011222345667778888888888888743322 3455 445344444 558899999999877
Q ss_pred Cceeeecc--cC---cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-------------CCCE
Q 046899 230 PAVKVEKA--HN---ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-------------SAAV 291 (407)
Q Consensus 230 ~~~~~~~~--~~---~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------------~~~v 291 (407)
....+.- +. ..++.+.|. ++.+++..-.+..|.+.|.++ ++.+..+... ....
T Consensus 136 -~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~t------G~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 136 -QVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPAS------GKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp -EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTT------CBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred -EEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCC------CCEEEEEECCcCccccccccCCcCCce
Confidence 3443332 22 245667776 566666665678999999999 8877766521 2357
Q ss_pred EEEEEcCCCCCEEEEeeC
Q 046899 292 LCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 292 ~~v~~~~~~~~ll~s~~~ 309 (407)
+.||++|++..||+||-.
T Consensus 207 NGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 899999999989988753
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.43 E-value=2e-07 Score=84.15 Aligned_cols=192 Identities=9% Similarity=-0.046 Sum_probs=124.7
Q ss_pred CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe----------CCCcEEEEEcCCCCCCceeeeccc------
Q 046899 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG----------DDSCLILWDARSGSTPAVKVEKAH------ 238 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~------ 238 (407)
.+.++|..+++.+.++.....+ .+.++|++ ..++++. .++.|.+||+.+.+ ....+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccccc
Confidence 4558899999999998766666 79999999 4555554 37899999999988 45554322
Q ss_pred -CcceEEEEecCCCCCEEEEEeC--CCcEEE--EeCCC------CC----------------CCCC-------------C
Q 046899 239 -NADIHCVDWNPHDVNLILTGSA--DNSIHM--FDRRK------LT----------------SDGV-------------G 278 (407)
Q Consensus 239 -~~~v~~l~~~~~~~~~l~tg~~--dg~i~v--wd~~~------~~----------------~~~~-------------~ 278 (407)
......+.++| ++++++++.. +..+.+ +|+.+ .. .++. +
T Consensus 122 ~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 122 VGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp BSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred cCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 12346789999 8888888764 356888 87732 00 0000 0
Q ss_pred Cc------------------------------eeeecC--CC---------------------CCEEEEEEcCCCCCEEE
Q 046899 279 SP------------------------------IHKFEG--HS---------------------AAVLCVQWSPDKSSVFG 305 (407)
Q Consensus 279 ~~------------------------------~~~~~~--h~---------------------~~v~~v~~~~~~~~ll~ 305 (407)
+. +..+.. .. .....++++|+++++++
T Consensus 201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred eEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 00 000000 00 00011678999998886
Q ss_pred Eee---C-----CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccce-eeeEE-EeeeEEE
Q 046899 306 SSA---E-----DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRL-LVCLT-MVKVLEI 375 (407)
Q Consensus 306 s~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~-i~~~~-~d~~i~i 375 (407)
+.. . ++.+.++|+.+.+.+.++.... ...++.|++| +.. +++.. .+++|.|
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~D------------------g~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQD------------------GASDNYANSAGTEVLDI 341 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCS------------------SSCEEEEEETTTTEEEE
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCC------------------CCEEEEEccCCCCeEEE
Confidence 544 2 2356699999998888887544 4567788887 654 44555 4889999
Q ss_pred eeccccccCChHHHHHHHhhcc
Q 046899 376 WRMIDLIYRPEEEVLAELDKFK 397 (407)
Q Consensus 376 wd~~~~~~~~~~~~~~~~~~h~ 397 (407)
+|+. +++.++.+....
T Consensus 342 ID~~------t~kvv~~I~vg~ 357 (368)
T 1mda_H 342 YDAA------SDQDQSSVELDK 357 (368)
T ss_dssp EESS------SCEEEEECCCCS
T ss_pred EECC------CCcEEEEEECCC
Confidence 9998 666666665443
No 238
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.40 E-value=2.5e-06 Score=78.29 Aligned_cols=136 Identities=11% Similarity=-0.016 Sum_probs=98.4
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe---------CCCcEEEEEcCCCCCCceeeeccc------
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG---------DDSCLILWDARSGSTPAVKVEKAH------ 238 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~------ 238 (407)
+.+.++|..+++.+..+.....+ .++++|++..++++.. .++.|.++|..+.+ ....+.--
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccc
Confidence 67888999999999888766666 8999999944444432 46789999999887 44443211
Q ss_pred -CcceEEEEecCCCCCEEEEEeC--CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 239 -NADIHCVDWNPHDVNLILTGSA--DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 239 -~~~v~~l~~~~~~~~~l~tg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
......+.++| ++++++++.. ++.|.+.|+.+ .+.+.++..-. . ....|++...+++.+.||++.+
T Consensus 175 ~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t------~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~ 243 (426)
T 3c75_H 175 VGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEG------KTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLAR 243 (426)
T ss_dssp BSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTT------TEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEE
T ss_pred cCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCC------CeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEE
Confidence 22345789999 8999888764 57899999999 78888876422 1 3445666556667788888888
Q ss_pred EeCCCCCcc
Q 046899 316 WDHEKIGEK 324 (407)
Q Consensus 316 wd~~~~~~~ 324 (407)
.++..++..
T Consensus 244 V~~~~~~v~ 252 (426)
T 3c75_H 244 VDFADGETK 252 (426)
T ss_dssp EECCTTCCE
T ss_pred EECCCCcEE
Confidence 888554433
No 239
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.34 E-value=0.00056 Score=62.30 Aligned_cols=207 Identities=5% Similarity=-0.060 Sum_probs=119.5
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------CCcEEEEeccccccccccCCCC
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
.-...+..++|.+.++.++.+-...+.|..++.........+... ...+.. .+.+.+-|
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~lY~~d-------------- 177 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTD-------------- 177 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-CSCCCCEEEETTTTEEEEEE--------------
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-CCCccEEEEEeCCCeEEEEc--------------
Confidence 344568899999877888888777889999998765422211111 111100 11111111
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCcee
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVK 233 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~ 233 (407)
...+.|.+.+.........+.........|+++|.+..++++-... +.|..+++.... ...
T Consensus 178 ----------------~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~ 239 (386)
T 3v65_B 178 ----------------SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRI 239 (386)
T ss_dssp ----------------TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEE
T ss_pred ----------------CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--cEE
Confidence 1222333333332222222222334678999998775666665555 788888886543 222
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
.....-...+.|+++|.++++.++-...+.|..+|+.. ......+.........|++. . ..|+.+-...+.|
T Consensus 240 ~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V 311 (386)
T 3v65_B 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSI 311 (386)
T ss_dssp EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS------CSCEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEE
T ss_pred EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC------CeeEEEEECCCCCceEEEEE-C-CEEEEeeCCCCeE
Confidence 22223345689999983445555555567899999864 22222233334456888883 3 3477788888999
Q ss_pred EEEeCCCCCcccccc
Q 046899 314 NIWDHEKIGEKQDYG 328 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~ 328 (407)
..+|..+++....+.
T Consensus 312 ~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 312 NSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEETTTCCSCEEEE
T ss_pred EEEECCCCcceEEEc
Confidence 999966666555544
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.34 E-value=5.3e-06 Score=73.77 Aligned_cols=175 Identities=10% Similarity=0.002 Sum_probs=112.6
Q ss_pred ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899 166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV 245 (407)
Q Consensus 166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l 245 (407)
.+..++.++.+..+|.. ++.+..+......+.++...+++ . +..++ +.|..+| .+++ ...........+.++
T Consensus 149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~--~~~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 149 TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGT--EKWNFYAGYWTVTRP 220 (330)
T ss_dssp CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSC--EEEEECCSSCCCSCC
T ss_pred EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCc--EEEEEccCCcceece
Confidence 35556667888888888 77666666555667778887777 4 44444 8899999 6665 344444445567788
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325 (407)
Q Consensus 246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~ 325 (407)
..++ ++. +..++.++.+..+|.. ++.+..+......+.++...+++. |+ .++.++.|..+|. +++...
T Consensus 221 ~~~~-~g~-l~v~t~~~gl~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 221 AISE-DGT-IYVTSLDGHLYAINPD-------GTEKWRFKTGKRIESSPVIGNTDT-IY-FGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp EECT-TSC-EEEEETTTEEEEECTT-------SCEEEEEECSSCCCSCCEECTTSC-EE-EECTTCEEEEECT-TSCEEE
T ss_pred EECC-CCe-EEEEcCCCeEEEECCC-------CCEeEEeeCCCCccccceEcCCCe-EE-EecCCCCEEEECC-CCcEEE
Confidence 8887 554 5556777888888753 466666655444455566766775 54 6777888999996 555444
Q ss_pred ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 326 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.+......+.++.. ..+..|..++.+|.+++....
T Consensus 289 ~~~~~~~~~~~~~~-------------------d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 289 NFETGSWIIATPVI-------------------DENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEECSSCCCSCCEE-------------------CTTCCEEEECTTSCEEEEEC-
T ss_pred EEEcCCccccceEE-------------------cCCCEEEEEcCCCeEEEEecc
Confidence 44332222222222 124567788889999888765
No 241
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.31 E-value=2.4e-05 Score=76.93 Aligned_cols=145 Identities=11% Similarity=0.093 Sum_probs=95.5
Q ss_pred CCCCCCCCCcCceeeEee--cc-------cCEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCCCCceeeeccc-----
Q 046899 175 GDKPLESPSIGARGKYLG--HE-------DTVEDVQFCPSSA--QEFCSVGDDSCLILWDARSGSTPAVKVEKAH----- 238 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----- 238 (407)
.+..+|..+++.+-.++. |. .....+....+|. ..++.++.+|.|.++|.++++ .+......
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~--~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK--FISAKNFVPVNWA 361 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC--EEEEEESSCCSSE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC--EeccccccccCcc
Confidence 366678888887766553 21 1112222223442 478889999999999999988 33322211
Q ss_pred ------Ccce------------------------EEEEecCCCCCEEEEEeC----------------------------
Q 046899 239 ------NADI------------------------HCVDWNPHDVNLILTGSA---------------------------- 260 (407)
Q Consensus 239 ------~~~v------------------------~~l~~~~~~~~~l~tg~~---------------------------- 260 (407)
..++ ..++++| +..++++...
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 0011 1467888 6667766533
Q ss_pred ---------------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899 261 ---------------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325 (407)
Q Consensus 261 ---------------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~ 325 (407)
.|.|..||+.+ ++.+.++.. ..++....+...+..++ .++.|+.+++||+++++.+.
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~t------G~~~W~~~~-~~~~~~g~~~~~g~~v~-~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVA------QKAAWSVEH-VSPWNGGTLTTAGNVVF-QGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTT------TEEEEEEEE-SSSCCCCEEEETTTEEE-EECTTSEEEEEETTTCCEEE
T ss_pred ccccccccccCCCCCccEEEEEeCCC------CcEEeecCC-CCCCcCcceEeCCCEEE-EECCCCcEEEEECCCCceee
Confidence 27899999998 888877763 34455555666777554 78899999999999999887
Q ss_pred ccccC
Q 046899 326 DYGEL 330 (407)
Q Consensus 326 ~~~~~ 330 (407)
.+...
T Consensus 513 ~~~~~ 517 (677)
T 1kb0_A 513 EAPTG 517 (677)
T ss_dssp EEECS
T ss_pred eeeCC
Confidence 77643
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.29 E-value=1.2e-05 Score=73.36 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=97.7
Q ss_pred cccccCCCCCCCCCCCCc----CceeeEe------e-cccCEEEEEECCCCCcEEEEEeCC------CcEEEEEcCCCCC
Q 046899 167 NASKSGGNGDKPLESPSI----GARGKYL------G-HEDTVEDVQFCPSSAQEFCSVGDD------SCLILWDARSGST 229 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~----~~~~~~~------~-~~~~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~ 229 (407)
.+.+..++.|.++|..+. +...++. . ....-..+...|+| +++++..+ |.|.+.|..+.+
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~- 175 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE- 175 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC-
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe-
Confidence 445667788888887643 3333331 0 11134567788988 66666655 789999999888
Q ss_pred Cceeeeccc--C-cceEEEEecCCCCCEEEEEe-------------------CCCcEEEEeCCCCCCCCCCCceeeecCC
Q 046899 230 PAVKVEKAH--N-ADIHCVDWNPHDVNLILTGS-------------------ADNSIHMFDRRKLTSDGVGSPIHKFEGH 287 (407)
Q Consensus 230 ~~~~~~~~~--~-~~v~~l~~~~~~~~~l~tg~-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~h 287 (407)
.+.....- . ..-+.+.|+| +.+.+++.. .+.+|.+||+.+ ++.+.++...
T Consensus 176 -v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg 247 (462)
T 2ece_A 176 -PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLTLG 247 (462)
T ss_dssp -EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEESC
T ss_pred -EEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC------CcEeeEEecC
Confidence 45554322 1 2234588899 888888874 368999999998 7777777653
Q ss_pred C--CCEEEEEE--cCCCCCEEEEee-----CCCeEEEEeCCC
Q 046899 288 S--AAVLCVQW--SPDKSSVFGSSA-----EDGILNIWDHEK 320 (407)
Q Consensus 288 ~--~~v~~v~~--~~~~~~ll~s~~-----~d~~i~vwd~~~ 320 (407)
. .....++| +|+++++++++. .+++|.+|....
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 1 24456666 999999988887 888998766543
No 243
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.25 E-value=0.0013 Score=59.04 Aligned_cols=207 Identities=5% Similarity=-0.060 Sum_probs=117.8
Q ss_pred eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------CCcEEEEeccccccccccCCCC
Q 046899 81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAAEPGS 154 (407)
Q Consensus 81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~~~~~ 154 (407)
.....+..++|.+.++.++.+-...+.|..++.........+... ...+.. ++.+.+-|
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~ly~~d-------------- 134 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTD-------------- 134 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEE--------------
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCCeEEEEc--------------
Confidence 344568899999877888888777889999998765432221111 000100 11111111
Q ss_pred CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCcee
Q 046899 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVK 233 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~ 233 (407)
...+.|.+.+...................|+++|.+..++++-... +.|..+++.... ...
T Consensus 135 ----------------~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~ 196 (349)
T 3v64_C 135 ----------------SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRI 196 (349)
T ss_dssp ----------------TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEE
T ss_pred ----------------CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEE
Confidence 1112222333222111111222334568999999764667666665 889999887443 122
Q ss_pred eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313 (407)
Q Consensus 234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i 313 (407)
.....-...+.|+++|.++++.++-...+.|..+|+.. ......+...-.....+++. . ..|+.+-...+.|
T Consensus 197 ~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG------~~~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V 268 (349)
T 3v64_C 197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSI 268 (349)
T ss_dssp SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEE
T ss_pred EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC------CceEEEEeCCCCCceEEEEE-C-CEEEEecCCCCeE
Confidence 22223345689999984444555555567899999874 22222233334456788883 3 3477787788999
Q ss_pred EEEeCCCCCcccccc
Q 046899 314 NIWDHEKIGEKQDYG 328 (407)
Q Consensus 314 ~vwd~~~~~~~~~~~ 328 (407)
..+|..+++....+.
T Consensus 269 ~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 269 NSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTCCSCEEEE
T ss_pred EEEEccCCCccEEec
Confidence 999866665554443
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.23 E-value=0.00034 Score=60.08 Aligned_cols=135 Identities=5% Similarity=-0.011 Sum_probs=85.8
Q ss_pred CEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE-EEEeCCCcEEEEeCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGD--DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI-LTGSADNSIHMFDRRKL 272 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~ 272 (407)
....++++|++..++++... .+.|..+++.... ..............++++| ++..| ++-...+.|.++|...
T Consensus 123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g- 198 (267)
T 1npe_A 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ- 198 (267)
T ss_dssp SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE-
T ss_pred CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCC-
Confidence 35789999965355555543 4688888876433 1111112234578899999 55544 5555568999999975
Q ss_pred CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC-cccCCCCcCc
Q 046899 273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY-PIIHPAYSSD 342 (407)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~d 342 (407)
......+.. ......++.. +.+|+++....+.|..+|..+++.+..+..... ...++++.|+
T Consensus 199 -----~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 199 -----PGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp -----EEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred -----CceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 332223332 2334677764 456877777789999999998887777754332 3556666665
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.23 E-value=1e-05 Score=76.26 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=104.0
Q ss_pred cCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC---------------------------------
Q 046899 171 SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS--------------------------------- 217 (407)
Q Consensus 171 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg--------------------------------- 217 (407)
..++.+.++|..+++....+.-.. .-..++++|+| .++++++.+.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 344556667777777766665322 34567889998 5565555432
Q ss_pred -----cEEEEEcCC--CCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCCC------CCCCCceee
Q 046899 218 -----CLILWDARS--GSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLTS------DGVGSPIHK 283 (407)
Q Consensus 218 -----~i~iwd~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~------~~~~~~~~~ 283 (407)
.|.+.|.++ +.. ....+. -.....++.++| |+++++++ ..+..|.++|+.+... +.....+.+
T Consensus 250 ~~~i~~V~VID~~~~~~~~-~~~~Ip-vg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSL-FTRYIP-IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp SEEETTEEEEECSGGGCCS-SEEEEE-EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eeEECcEEEEeCcccCCce-eEEEEe-cCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 466777766 331 122222 223456899999 88766554 4678999999986210 000113344
Q ss_pred ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC----------CCcccccccCCCc-----ccCCCCcCc
Q 046899 284 FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK----------IGEKQDYGELKYP-----IIHPAYSSD 342 (407)
Q Consensus 284 ~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~----------~~~~~~~~~~~~~-----v~~~~~s~d 342 (407)
+.. ......++|+|+| +++++...|++|.+||+.+ .+.+..+..+..| -.+..+++|
T Consensus 327 v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D 398 (595)
T 1fwx_A 327 PEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT 398 (595)
T ss_dssp CBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred cCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC
Confidence 443 3457899999999 7888999999999999987 4445555555443 245567777
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.19 E-value=1.4e-05 Score=78.49 Aligned_cols=101 Identities=9% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCCCCCCCCCCcCceeeEeec--c-----------------------------cCEEEEEECCCCCcEEEEEeCCC----
Q 046899 173 GNGDKPLESPSIGARGKYLGH--E-----------------------------DTVEDVQFCPSSAQEFCSVGDDS---- 217 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~~~--~-----------------------------~~v~~l~~~~~~~~~l~s~~~dg---- 217 (407)
++.+..+|..+++.+-.+... . .....+++.|.. .+++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccc
Confidence 477888899888877665421 0 011246777876 5777777666
Q ss_pred ---------------cEEEEEcCCCCCCceeeecc--cC-------cceEEEEecCCCCC---EEEEEeCCCcEEEEeCC
Q 046899 218 ---------------CLILWDARSGSTPAVKVEKA--HN-------ADIHCVDWNPHDVN---LILTGSADNSIHMFDRR 270 (407)
Q Consensus 218 ---------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~~---~l~tg~~dg~i~vwd~~ 270 (407)
.|..+|.++++ ....++. |. .+.....+.. +++ .++.++.+|.++++|.+
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~--~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~ 332 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGK--LAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRT 332 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETT
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCc--eeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECC
Confidence 39999999998 4444432 22 2232233333 444 68899999999999999
Q ss_pred CCCCCCCCCceee
Q 046899 271 KLTSDGVGSPIHK 283 (407)
Q Consensus 271 ~~~~~~~~~~~~~ 283 (407)
+ ++.+..
T Consensus 333 t------G~~l~~ 339 (668)
T 1kv9_A 333 N------GKLISA 339 (668)
T ss_dssp T------CCEEEE
T ss_pred C------CCEecc
Confidence 8 777643
No 247
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.14 E-value=0.0031 Score=55.57 Aligned_cols=213 Identities=8% Similarity=-0.043 Sum_probs=115.2
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC---CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ---PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
+.....+..++|.+.++.++.+-..++.|..++.... .....+.......+. + + ..|...
T Consensus 26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~--g-l-avd~~~------------- 88 (316)
T 1ijq_A 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD--G-L-AVDWIH------------- 88 (316)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC--E-E-EEETTT-------------
T ss_pred hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC--E-E-EEeecC-------------
Confidence 3455678899999867788888878889999998752 111111110000000 0 0 001000
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceeee
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~ 235 (407)
....++-...+.|.+.+...................++++|.+..++++.... +.|...++.... .....
T Consensus 89 -------~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~ 159 (316)
T 1ijq_A 89 -------SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLV 159 (316)
T ss_dssp -------TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEE
T ss_pred -------CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEE
Confidence 00111112233344444332222222222335678999998764666665443 788888876433 12122
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec---CCCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~ll~s~~~d~~ 312 (407)
...-...+.|+++|.++++.++-...+.|..+|+.. .....+. ..-.....+++. +.+++.+-...+.
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-------~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 230 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-------CceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCe
Confidence 223346789999983444445545567999999874 2222221 123346788885 3457778878899
Q ss_pred EEEEeCCCCCccccc
Q 046899 313 LNIWDHEKIGEKQDY 327 (407)
Q Consensus 313 i~vwd~~~~~~~~~~ 327 (407)
|..+|..+++....+
T Consensus 231 V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 231 IFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEETTTCCCCEEE
T ss_pred EEEEeCCCCcceEEE
Confidence 999998766655444
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.12 E-value=0.00047 Score=60.58 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=68.0
Q ss_pred CEEEEEECCCCCcEEEEEeCC-C-cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDD-S-CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~d-g-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~ 273 (407)
....+++.+++ +++++.... + .|..+|..+++....... ........++..+ ++..+++-..++.|.++|...
T Consensus 73 ~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~-- 147 (306)
T 2p4o_A 73 KVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ-- 147 (306)
T ss_dssp EEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT--
T ss_pred CceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCC--
Confidence 46789999998 566555433 2 477777776662111111 1122334555555 555555554688999999764
Q ss_pred CCCCCC-cee---------eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 274 SDGVGS-PIH---------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 274 ~~~~~~-~~~---------~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
+. .+. .....-...+.+ +|++.+|+++-...+.|..+|+..
T Consensus 148 ----~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 148 ----PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp ----TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred ----CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 21 111 001111245566 788888888888889999999875
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.08 E-value=0.00047 Score=61.00 Aligned_cols=121 Identities=11% Similarity=-0.030 Sum_probs=74.9
Q ss_pred CEEEEEECC-CCCcEEEEEeC-----------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE
Q 046899 196 TVEDVQFCP-SSAQEFCSVGD-----------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT 257 (407)
Q Consensus 196 ~v~~l~~~~-~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t 257 (407)
..+.+++.+ +| +++++... ++.|..+|..+++ .. .........+.|+++| +++.|+.
T Consensus 127 ~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~-~~~~~~~~p~gia~~~-dg~~lyv 201 (322)
T 2fp8_A 127 WLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--TT-LLLKELHVPGGAEVSA-DSSFVLV 201 (322)
T ss_dssp CEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--EE-EEEEEESCCCEEEECT-TSSEEEE
T ss_pred ccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE--EE-EeccCCccCcceEECC-CCCEEEE
Confidence 468899999 88 66665432 3678888876655 22 1111223456799999 8776555
Q ss_pred E-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC----------CCeEEEEeCCCCCcccc
Q 046899 258 G-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE----------DGILNIWDHEKIGEKQD 326 (407)
Q Consensus 258 g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~----------d~~i~vwd~~~~~~~~~ 326 (407)
+ ...+.|.+|++.... ......+....+ ...+++.++|. |+++... .+.|..+|.. ++.+..
T Consensus 202 ~d~~~~~I~~~~~~~~~----~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~ 274 (322)
T 2fp8_A 202 AEFLSHQIVKYWLEGPK----KGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEV 274 (322)
T ss_dssp EEGGGTEEEEEESSSTT----TTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEE
T ss_pred EeCCCCeEEEEECCCCc----CCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCC-CCEEEE
Confidence 5 556899999987521 011122211223 78899999998 5555543 4678888864 455555
Q ss_pred cc
Q 046899 327 YG 328 (407)
Q Consensus 327 ~~ 328 (407)
+.
T Consensus 275 ~~ 276 (322)
T 2fp8_A 275 IP 276 (322)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 250
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.06 E-value=4.2e-05 Score=75.31 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC-CEEEE
Q 046899 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA-AVLCV 294 (407)
Q Consensus 216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~-~v~~v 294 (407)
+|.|..||+.+++ .......+ .++..-.+.. .+.++++|+.||.++.||.++ ++.+.+++...+ ...-+
T Consensus 454 ~g~l~A~D~~tG~--~~W~~~~~-~~~~~g~~~t-agglvf~gt~dg~l~a~D~~t------G~~lw~~~~~~~~~~~p~ 523 (689)
T 1yiq_A 454 SGKLIAWDPVKQQ--AAWEVPYV-TIFNGGTLST-AGNLVFEGSADGRVIAYAADT------GEKLWEQPAASGVMAAPV 523 (689)
T ss_dssp EEEEEEEETTTTE--EEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCE
T ss_pred ceeEEEEECCCCC--eEeEccCC-CCccCccceE-CCCEEEEECCCCcEEEEECCC------CccceeeeCCCCcccCce
Confidence 3789999999988 45554333 2333334444 567889999999999999999 999988875422 22346
Q ss_pred EEcCCCCCEEEEee
Q 046899 295 QWSPDKSSVFGSSA 308 (407)
Q Consensus 295 ~~~~~~~~ll~s~~ 308 (407)
.|..+|+..+++.+
T Consensus 524 ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 524 TYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 66778875555443
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.02 E-value=2.6e-05 Score=66.52 Aligned_cols=176 Identities=9% Similarity=-0.032 Sum_probs=115.2
Q ss_pred CCCCCCCCCCCcCceeeEeecc-cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899 173 GNGDKPLESPSIGARGKYLGHE-DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
++.+.++|..+++.+..+.-.. .....+++. +..++++.-.++.+.++|..+.+ .+..+..-...-..++ + +
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~~g~glt--~-D 115 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMKDGWGLA--T-D 115 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEECCSSSCCEEE--E-C
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEECCCCCeEEEE--E-C
Confidence 5678888888888887765222 223355655 33566666678999999999877 4444432212223344 4 4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD 326 (407)
Q Consensus 252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 326 (407)
+..++++..++.|.++|..+ .+.+..+.-.. ..++.+.|. ++ .+++....++.|.+.|+.+++.+..
T Consensus 116 g~~l~vs~gs~~l~viD~~t------~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~ 187 (266)
T 2iwa_A 116 GKILYGSDGTSILYEIDPHT------FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGW 187 (266)
T ss_dssp SSSEEEECSSSEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCC------CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEE
Confidence 45555556788999999998 77777776421 236788888 66 4887777789999999999888777
Q ss_pred cccCC-------------CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899 327 YGELK-------------YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID 380 (407)
Q Consensus 327 ~~~~~-------------~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~ 380 (407)
+.-.. .-..+++|+++ ....++++...++|.+-++..
T Consensus 188 I~~~g~~~~~~~~~~~~~~v~nGIa~~~~-----------------~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 188 ILLPNLRKKLIDEGFRDIDVLNGIAWDQE-----------------NKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EECHHHHHHHHHTTCTTCCCEEEEEEETT-----------------TTEEEEEETTCSEEEEEEEEE
T ss_pred EECCCcccccccccccccCceEEEEEcCC-----------------CCEEEEECCCCCeEEEEEEec
Confidence 65321 11234555544 234555666677888887764
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.02 E-value=5.9e-05 Score=63.67 Aligned_cols=145 Identities=5% Similarity=-0.061 Sum_probs=102.7
Q ss_pred cccccCCCCCCCCCCCCcCceeeEeeccc-CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLGHED-TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV 245 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l 245 (407)
..+.+.++.++.+|..+++.+..+ -... .-..+++.. ..+++..-.++.+.+||..+.+ .+..+.. ...-..+
T Consensus 68 y~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~-~~eGwGL 141 (268)
T 3nok_A 68 FESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQ--RERTTRY-SGEGWGL 141 (268)
T ss_dssp EEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTE--EEEEEEC-SSCCCCE
T ss_pred EEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCc--EEEEEeC-CCceeEE
Confidence 445566677999999999988887 3222 123466544 3566666778999999999888 4555543 2333455
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
++ ++..|+.+..++.|.++|..+ .+.+.++.... ..++.+.|. +|. |+|....++.|.+.|..+
T Consensus 142 t~---Dg~~L~vSdGs~~l~~iDp~T------~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 142 CY---WNGKLVRSDGGTMLTFHEPDG------FALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp EE---ETTEEEEECSSSEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTT
T ss_pred ec---CCCEEEEECCCCEEEEEcCCC------CeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCC
Confidence 54 456666666789999999998 77787776422 245777887 665 887777789999999999
Q ss_pred CCcccccc
Q 046899 321 IGEKQDYG 328 (407)
Q Consensus 321 ~~~~~~~~ 328 (407)
++.+..+.
T Consensus 211 G~V~~~Id 218 (268)
T 3nok_A 211 GTVVGVID 218 (268)
T ss_dssp CBEEEEEE
T ss_pred CcEEEEEE
Confidence 88877654
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.99 E-value=3.6e-05 Score=64.98 Aligned_cols=140 Identities=9% Similarity=0.057 Sum_probs=96.7
Q ss_pred CCCCCCCCCCcCceeeEeecccC-EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDT-VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 252 (407)
+.++.+|..+++.+....-.... -..++.. +..+++..-.++.+.+||..+.+ .+..+..- ..-..+++ ++
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~-~eG~glt~---dg 136 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYD-GEGWGLTH---ND 136 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC--EEEEEECS-SCCCCEEE---CS
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc--EEEEEECC-CCceEEec---CC
Confidence 37888999999988887643322 1234543 43566666678999999999988 45555432 23344554 44
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--C---CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~---~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
..|+....++.|.++|..+ .+.+.++... . ..++.+.|. +|. |+|....++.|.+.|..+++.+..+
T Consensus 137 ~~L~~SdGs~~i~~iDp~T------~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 137 QYLIMSDGTPVLRFLDPES------LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp SCEEECCSSSEEEEECTTT------CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEE
T ss_pred CEEEEECCCCeEEEEcCCC------CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEE
Confidence 5555555578899999998 7777777642 1 335567886 665 8877778899999999998887766
Q ss_pred cc
Q 046899 328 GE 329 (407)
Q Consensus 328 ~~ 329 (407)
.-
T Consensus 209 d~ 210 (262)
T 3nol_A 209 DL 210 (262)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 254
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.98 E-value=0.0009 Score=59.99 Aligned_cols=138 Identities=7% Similarity=-0.042 Sum_probs=89.8
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVN 253 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 253 (407)
..|+..+....... .+.........++|++.+..++++-...+.|..+++.... ..............+++++.+++
T Consensus 53 ~~I~~i~~~g~~~~-~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 53 IDIRQVLPHRSEYT-LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp SCEEEECTTSCCEE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTE
T ss_pred cceEEEeCCCCeeE-EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--ceEEEeCCCCCccEEEEecCCCe
Confidence 34444554443332 2223344578999998664777777778999999988655 22222222234567888874566
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCC
Q 046899 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEK 320 (407)
Q Consensus 254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~ 320 (407)
++++-...+.|.+.++.. ......+...-.....++++|.+..|+.+-... +.|...++..
T Consensus 130 ly~~d~~~~~I~~~~~dG------~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDG------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp EEEEETTTTEEEEEETTS------CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEEEcCCCCeEEEEcCCC------CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 666666678999999875 222222333335679999999777787777666 8899998875
No 255
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.95 E-value=0.0056 Score=55.89 Aligned_cols=207 Identities=8% Similarity=-0.022 Sum_probs=116.2
Q ss_pred eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC---CcccccCcCCCCCCC------CCcEEEEecccccccccc
Q 046899 80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP---NRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAA 150 (407)
Q Consensus 80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~ 150 (407)
......+..|+|.+.++.++.+-...+.|..+++.... ....+.......+.. .+.+.+
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~------------ 175 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW------------ 175 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEE------------
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEE------------
Confidence 44567889999998778788887778889999887532 111111100000000 111111
Q ss_pred CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCC
Q 046899 151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGST 229 (407)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~ 229 (407)
+-...+.|.+.+.........+.........|+++|.+..++++-.. .+.|...++....
T Consensus 176 ------------------~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~- 236 (400)
T 3p5b_L 176 ------------------TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 236 (400)
T ss_dssp ------------------EETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-
T ss_pred ------------------EECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-
Confidence 11223344444444333222333334457899999976455555433 4789998887544
Q ss_pred CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-c--CCCCCEEEEEEcCCCCCEEEE
Q 046899 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-E--GHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~--~h~~~v~~v~~~~~~~~ll~s 306 (407)
........-...+.|++++.++++..+=...+.|..+|+.. .....+ . ..-.....|++. +.+|+.+
T Consensus 237 -~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~l~~P~gl~v~--~~~lywt 306 (400)
T 3p5b_L 237 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAHPFSLAVF--EDKVFWT 306 (400)
T ss_dssp -CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CCCEEEEECSSTTSSEEEEEEE--TTEEEEE
T ss_pred -cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-------CccEEEEeCCCCCCCCEEEEEe--CCEEEEe
Confidence 22222233356789999983444444444567899999875 222222 2 123445677773 3457778
Q ss_pred eeCCCeEEEEeCCCCCccccc
Q 046899 307 SAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 307 ~~~d~~i~vwd~~~~~~~~~~ 327 (407)
-...+.|..+|..+++.+..+
T Consensus 307 d~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 307 DIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp ESSSCSEEEEESSSCCCCEEE
T ss_pred cCCCCeEEEEEcCCCCceEEE
Confidence 778889999997766655444
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.90 E-value=0.00056 Score=65.72 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=38.0
Q ss_pred cEEEEEcCCCCCCceeeecc--c--------CcceEEEEecCCCC---CEEEEEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899 218 CLILWDARSGSTPAVKVEKA--H--------NADIHCVDWNPHDV---NLILTGSADNSIHMFDRRKLTSDGVGSPIHKF 284 (407)
Q Consensus 218 ~i~iwd~~~~~~~~~~~~~~--~--------~~~v~~l~~~~~~~---~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~ 284 (407)
.|..+|.++++ ....++. | ..++. +...+ ++ ..++.++.+|.+.++|.++ ++.+..+
T Consensus 273 ~v~Ald~~tG~--~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~~w~~ 342 (571)
T 2ad6_A 273 TIWGRDLDTGM--AKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNREN------GNLIVAE 342 (571)
T ss_dssp EEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTT------CCEEEEE
T ss_pred EEEEEecCCCc--EEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCC------CCEEeee
Confidence 59999999988 4444332 2 12221 22223 55 3677889999999999988 7777655
Q ss_pred c
Q 046899 285 E 285 (407)
Q Consensus 285 ~ 285 (407)
.
T Consensus 343 ~ 343 (571)
T 2ad6_A 343 K 343 (571)
T ss_dssp E
T ss_pred c
Confidence 4
No 257
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.87 E-value=0.0054 Score=54.04 Aligned_cols=203 Identities=8% Similarity=-0.030 Sum_probs=113.9
Q ss_pred CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------CCcEEEEeccccccccccCCCCCcc
Q 046899 84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAAEPGSAKS 157 (407)
Q Consensus 84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~~~~~~~~ 157 (407)
..+.+|.|.+.++.++.+-...+.|..++.........+.......+.. ++.+.+-|
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d----------------- 97 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD----------------- 97 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEE-----------------
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEE-----------------
Confidence 4577899998778888888888899999987653221111110000100 11111111
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCCCceeeec
Q 046899 158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG-DDSCLILWDARSGSTPAVKVEK 236 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~ 236 (407)
...+.|.+++...................|++.|.+..++++-. ..+.|...++.-.. ......
T Consensus 98 -------------~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~ 162 (318)
T 3sov_A 98 -------------SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--RFIIIN 162 (318)
T ss_dssp -------------TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--CEEEEC
T ss_pred -------------CCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--eEEEEE
Confidence 11222333333221111112223345689999987645555542 35788888876433 122222
Q ss_pred ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
..-...+.|+++|.++++..+=...+.|..+|+.. .....+ ...-.....+++.. ..++.+-...+.|..
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-------TNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILA 233 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-------CceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEE
Confidence 22345689999984444444545567899999874 222222 22344567888853 347777777899999
Q ss_pred EeCCCCCccccc
Q 046899 316 WDHEKIGEKQDY 327 (407)
Q Consensus 316 wd~~~~~~~~~~ 327 (407)
+|..+++....+
T Consensus 234 ~~~~~G~~~~~i 245 (318)
T 3sov_A 234 CNKYTGEGLREI 245 (318)
T ss_dssp EETTTCCSCEEE
T ss_pred EECCCCCceEEE
Confidence 998776655444
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.87 E-value=0.00059 Score=62.15 Aligned_cols=140 Identities=6% Similarity=-0.068 Sum_probs=90.9
Q ss_pred CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899 173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252 (407)
Q Consensus 173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 252 (407)
...|+.++.......... ........++|++.+..++++-...+.|..+++.... ..............+++++.++
T Consensus 95 ~~~I~~i~~~~~~~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp BSCEEEECTTSCCCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTT
T ss_pred CccceeeccCCCcEEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCC
Confidence 345555565544433333 3345678999998664777777778999999988655 2222222223446788887456
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCCC
Q 046899 253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEKI 321 (407)
Q Consensus 253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~~ 321 (407)
+++++-...+.|.+.++.. ......+...-.....++++|.+.+|+.+-... +.|...++...
T Consensus 172 ~lY~~d~~~~~I~~~~~dg------~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDG------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp EEEEEETTTTEEEECBTTS------CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred eEEEEcCCCCeEEEEeCCC------CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 6666666678899988875 222223333335679999999888787776666 78999988753
No 259
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.82 E-value=0.0003 Score=69.26 Aligned_cols=211 Identities=7% Similarity=-0.060 Sum_probs=113.1
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC----CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ----PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST 158 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 158 (407)
...+..|+|.+..+.++++-...+.|+.+++.+. .....+... .. .+.++.+.
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-~~----------------------~P~glavD 461 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQ----------------------APDGLAVD 461 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-C------------------------CCCEECC
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-CC----------------------CcceEEEE
Confidence 3457788898866667767667788999988752 111111000 00 01111100
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceeeecc
Q 046899 159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKVEKA 237 (407)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~ 237 (407)
..+ ...+++-...+.|.+++.........+.........|+++|.+..++++-... +.|..+++..... ......
T Consensus 462 ~~~--g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~~ 537 (699)
T 1n7d_A 462 WIH--SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTE 537 (699)
T ss_dssp CSS--SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESCS
T ss_pred eeC--CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEeC
Confidence 000 01122222344455555443322222222223457789998764555554333 7888887764331 112112
Q ss_pred cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
.-...+.|+|+|.+++++++-...+.|..+|+.. .....+.. .-.....|++..+ +|+++....+.|.
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~ 608 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIF 608 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-------SCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEE
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-------CceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEE
Confidence 2344578999984566666666678899999864 22222221 1223445666443 5777887889999
Q ss_pred EEeCCCCCccccccc
Q 046899 315 IWDHEKIGEKQDYGE 329 (407)
Q Consensus 315 vwd~~~~~~~~~~~~ 329 (407)
.+|..+++.+..+..
T Consensus 609 ~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 609 SANRLTGSDVNLLAE 623 (699)
T ss_dssp EEETTTEEEEECCCT
T ss_pred EEEccCCCceEEeec
Confidence 999887776665543
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.82 E-value=0.0011 Score=58.39 Aligned_cols=138 Identities=7% Similarity=-0.051 Sum_probs=86.4
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC---CCCceeeecccCcceEEEEecCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG---STPAVKVEKAHNADIHCVDWNPH 250 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~l~~~~~ 250 (407)
..|+..|+...+....+ ........++|++.+..++++-..++.|..+++... .. ..............+++++.
T Consensus 10 ~~I~~i~~~~~~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCcceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc-cEEEEeCCCCCcCEEEEeec
Confidence 34555555554443333 234567899999876467777777899999998761 21 12222222234578888863
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCC
Q 046899 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEK 320 (407)
Q Consensus 251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~ 320 (407)
++++.++-...+.|.++|+.. .....+ ...-.....++++|.+.+|+.+.... +.|...++..
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g-------~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKG-------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTS-------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCeEEEEECCCCEEEEEeCCC-------CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 555666666778999999875 333332 32335679999999777787666544 7888888764
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.78 E-value=0.0033 Score=53.16 Aligned_cols=114 Identities=8% Similarity=0.141 Sum_probs=73.3
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCCCceeee-------cccCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GSTPAVKVE-------KAHNADIHCVDWNPHDVNLILTGSADNSI 264 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~l~tg~~dg~i 264 (407)
......|+|+|.+ +.|.++.+.....+|.++. ... ..... ..+...+.+++++|..+++++.......+
T Consensus 120 N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~-~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 120 NCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSN-ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL 197 (255)
T ss_dssp SSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSS-CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred cCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCC-ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence 4557899999988 4455555544555555541 110 11111 11234578999999778888888888899
Q ss_pred EEEeCCCCCCCCCCCceeeecCCC---------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
..+|... +++..+.-.. ..-..|+|.++|. |+++ ++-+.+..+.-
T Consensus 198 ~~~d~~g-------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 198 QEVTLVG-------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEECTTC-------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEEC
T ss_pred EEEcCCC-------CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEEe
Confidence 9999774 5555544321 3679999999997 6644 66666666643
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.78 E-value=0.00033 Score=58.52 Aligned_cols=139 Identities=4% Similarity=-0.078 Sum_probs=95.9
Q ss_pred CCCCCCCCCCcCceeeEeecccC-EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDT-VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 252 (407)
+.++.+|..+++.+....-.... -..++.. +..+++..-.++.+.+||..+.+ .+.++... ..-..++. ++
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~-~~Gwglt~---dg 114 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYP-GEGWALTS---DD 114 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECS-SCCCEEEE---CS
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCC-CCceEEee---CC
Confidence 46788888888888777533221 1234443 33566666779999999999887 45555432 33356664 34
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
..|+.+..++.|.++|..+ .+.+.++.-.. ..++.+.|. +|+ |+|....+..|.+.|..+++.+..+
T Consensus 115 ~~L~vSdgs~~l~~iDp~t------~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 115 SHLYMSDGTAVIRKLDPDT------LQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp SCEEEECSSSEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEE
T ss_pred CEEEEECCCCeEEEEeCCC------CeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEE
Confidence 4555555688999999999 77777776422 345677776 565 7777777889999999998887766
Q ss_pred c
Q 046899 328 G 328 (407)
Q Consensus 328 ~ 328 (407)
.
T Consensus 187 d 187 (243)
T 3mbr_X 187 D 187 (243)
T ss_dssp E
T ss_pred E
Confidence 5
No 263
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.76 E-value=0.013 Score=58.29 Aligned_cols=215 Identities=8% Similarity=-0.033 Sum_probs=116.3
Q ss_pred EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC---cccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899 79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN---RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA 155 (407)
Q Consensus 79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 155 (407)
+......+..|+|.+.++.++++-...+.|+.+++..... ...+.......+. ++
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~----------------------GL 476 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD----------------------GL 476 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC----------------------EE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc----------------------ee
Confidence 3445667889999987778888877788899998875321 1111110000000 00
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceee
Q 046899 156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKV 234 (407)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~ 234 (407)
++-..+ ...+++-...+.|.+.++........+.........|+++|.+..++++-... +.|...++.... ....
T Consensus 477 AvD~~~--~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~l 552 (791)
T 3m0c_C 477 AVDWIH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSL 552 (791)
T ss_dssp EEETTT--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEE
T ss_pred eeeecC--CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEE
Confidence 000000 01112222233444444443222222223345678999999764666554333 789988887444 2223
Q ss_pred ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~ 312 (407)
....-...+.|++++.+++++++=...+.|..+++.. ......+.. .-....+|++. +.+|+.+-...+.
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG------~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 624 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC------CceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE
Confidence 3333356789999984444444444567899999875 222222222 22345677764 3458778778889
Q ss_pred EEEEeCCCCCccccc
Q 046899 313 LNIWDHEKIGEKQDY 327 (407)
Q Consensus 313 i~vwd~~~~~~~~~~ 327 (407)
|...|..+++.+..+
T Consensus 625 I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 625 IFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEETTTCCCCEEE
T ss_pred EEEEeCCCCcceEEe
Confidence 999987766554443
No 264
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.72 E-value=0.0032 Score=54.97 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=78.8
Q ss_pred EEEEEE---CCCCCcEEEEEe-------------CCCcEEEEEcC---CCCCCceeeeccc-----------CcceEEEE
Q 046899 197 VEDVQF---CPSSAQEFCSVG-------------DDSCLILWDAR---SGSTPAVKVEKAH-----------NADIHCVD 246 (407)
Q Consensus 197 v~~l~~---~~~~~~~l~s~~-------------~dg~i~iwd~~---~~~~~~~~~~~~~-----------~~~v~~l~ 246 (407)
+..|.| .|++ .++++.. .+..|..||+. +++......+... ......++
T Consensus 65 ~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 65 MSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 468899 5876 6777543 26789999998 6663222222211 12478999
Q ss_pred ecCCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCCceeeec------CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 247 WNPHDVNLILTGSAD-NSIHMFDRRKLTSDGVGSPIHKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 247 ~~~~~~~~l~tg~~d-g~i~vwd~~~~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
.++ +|+..++++.- +.|..++... +.+..+. ......+.|+++|+|..|++.-+ ++.+.-+|+.
T Consensus 144 vD~-~GnaYVt~s~~~~~I~rV~pdG-------~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 144 QDR-DGNSYVAFALGMPAIARVSADG-------KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp ECT-TSCEEEEEEESSCEEEEECTTS-------CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred ECC-CCCEEEeCCCCCCeEEEEeCCC-------CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 999 89999998888 8877777664 3333321 11223679999999998876666 9999999988
Q ss_pred C
Q 046899 320 K 320 (407)
Q Consensus 320 ~ 320 (407)
.
T Consensus 215 ~ 215 (334)
T 2p9w_A 215 K 215 (334)
T ss_dssp S
T ss_pred C
Confidence 4
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.72 E-value=0.023 Score=56.94 Aligned_cols=138 Identities=11% Similarity=0.087 Sum_probs=88.3
Q ss_pred ccccCCCCCCCCCCCCcCceeeEee-------cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec----
Q 046899 168 ASKSGGNGDKPLESPSIGARGKYLG-------HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---- 236 (407)
Q Consensus 168 ~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---- 236 (407)
-.++.++.+..++...... ..+.. ....|.++...++| + |..|+.++-|..||..++. ......
T Consensus 324 Wigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~ 398 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQR--FTSYTLQEDE 398 (795)
T ss_dssp EEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCC--EEEECCC---
T ss_pred EEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCc--EEEEecCCCC
Confidence 3355555566665443332 12211 23569999998887 4 5567788789999987765 221111
Q ss_pred ----ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-----CCCCCEEEEEEcCCCCCEEEEe
Q 046899 237 ----AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-----GHSAAVLCVQWSPDKSSVFGSS 307 (407)
Q Consensus 237 ----~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~ll~s~ 307 (407)
.....|.++..++ +++.|..|+.++-+..||.++ ++ ...+. .....|.++...++|. |. .|
T Consensus 399 ~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~------~~-~~~~~~~~~~l~~~~v~~i~~d~~g~-lw-ig 468 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNS------GQ-VENFNQRNSQLVNENVYAILPDGEGN-LW-LG 468 (795)
T ss_dssp ---CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTT------CC-EEEECTTTSCCSCSCEEEEEECSSSC-EE-EE
T ss_pred cccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCC------Cc-EEEeecCCCCcCCCeeEEEEECCCCC-EE-EE
Confidence 1235789999888 777566777777799999886 33 33332 1345799999998888 44 34
Q ss_pred eCCCeEEEEeCCCC
Q 046899 308 AEDGILNIWDHEKI 321 (407)
Q Consensus 308 ~~d~~i~vwd~~~~ 321 (407)
+.+ -+.+||..+.
T Consensus 469 t~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 469 TLS-ALVRFNPEQR 481 (795)
T ss_dssp ESS-CEEEEETTTT
T ss_pred ecC-ceeEEeCCCC
Confidence 444 4888998764
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.70 E-value=0.0016 Score=64.81 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=66.9
Q ss_pred EEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEeC---CCcEEEEe
Q 046899 198 EDVQFCPSSAQEFCSVGDD-----SCLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSA---DNSIHMFD 268 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd 268 (407)
..++|+|++. .|+....| ..|..+++.++.......+. ........+.|+| ++++|+.... ...|.++|
T Consensus 224 ~~~~WspDg~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 224 GEIVWGPDHT-SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp SCCEECSSTT-EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEE
T ss_pred eeEEEecCCC-EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEE
Confidence 3578999984 44444443 36888888765421122222 2234466889999 8888776553 34688889
Q ss_pred CCCCCCCCCCCc-eeee-cCCCCCEEEEEEcCCCCCEEEEeeCC----CeEEEEeCCC
Q 046899 269 RRKLTSDGVGSP-IHKF-EGHSAAVLCVQWSPDKSSVFGSSAED----GILNIWDHEK 320 (407)
Q Consensus 269 ~~~~~~~~~~~~-~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd~~~ 320 (407)
+.... .+. +..+ ........++.|+. |..|+.....+ ..|..+|+.+
T Consensus 302 ~~~~~----~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 302 LRKGN----AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSSCT----TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCC----CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 87621 122 1333 33445666676654 44455455443 3677777764
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.67 E-value=0.0022 Score=61.65 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=39.3
Q ss_pred CcEEEEEcCCCCCCceeeec--ccC--------cceEEEEec-CCCC---CEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899 217 SCLILWDARSGSTPAVKVEK--AHN--------ADIHCVDWN-PHDV---NLILTGSADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~~--~~~--------~~v~~l~~~-~~~~---~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
+.|..+|.++++ ....++ .|. .++. +... . ++ ..++.++.+|.++++|.++ ++++.
T Consensus 291 ~~v~AlD~~TG~--~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw 360 (582)
T 1flg_A 291 SGQVGVDPSSGE--VKWFYQHTPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRSN------GKLQN 360 (582)
T ss_dssp SEEEEECTTTCC--EEEEEESSTTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETTT------CCEEE
T ss_pred ceEEEEeCCCCC--EEEEEeCCCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECCC------CCEec
Confidence 689999999998 444432 232 1222 2222 3 45 4788899999999999988 77766
Q ss_pred eec
Q 046899 283 KFE 285 (407)
Q Consensus 283 ~~~ 285 (407)
.+.
T Consensus 361 ~~~ 363 (582)
T 1flg_A 361 AFP 363 (582)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.59 E-value=0.0019 Score=62.11 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=47.9
Q ss_pred EEECCCCCcEEEEEeCC----------------CcEEEEEcCCCCCCceeeecc--cC--------cceEEEEec-CCCC
Q 046899 200 VQFCPSSAQEFCSVGDD----------------SCLILWDARSGSTPAVKVEKA--HN--------ADIHCVDWN-PHDV 252 (407)
Q Consensus 200 l~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~--~~--------~~v~~l~~~-~~~~ 252 (407)
+++.+.. .+++.++.+ +.|..+|.++++ ....++. |. .++. +... . ++
T Consensus 246 ~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~--~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G 320 (599)
T 1w6s_A 246 YAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE--AKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DG 320 (599)
T ss_dssp CEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEE-EEEECT-TS
T ss_pred eeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc--eeeEeecCCCccccccCCCccEE-Eecccc-CC
Confidence 3455655 456666554 379999999998 4444332 21 1222 2322 3 56
Q ss_pred ---CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec
Q 046899 253 ---NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE 285 (407)
Q Consensus 253 ---~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 285 (407)
..++.++.+|.+.++|.++ ++++....
T Consensus 321 ~~~~~v~~~~~~G~l~~lD~~t------G~~lw~~~ 350 (599)
T 1w6s_A 321 KARKLLTHPDRNGIVYTLDRTD------GALVSANK 350 (599)
T ss_dssp CEEEEEEEECTTSEEEEEETTT------CCEEEEEE
T ss_pred cEEEEEEEECCCcEEEEEECCC------CCEeeccc
Confidence 5778889999999999998 77776554
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=0.0069 Score=55.87 Aligned_cols=118 Identities=7% Similarity=0.086 Sum_probs=74.2
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDS----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
......|+|++++..++++...++ .+..++. .+.......+. .......++++|.++.++++-...+.|..+|.
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 345788999999933555554332 3444443 33311112222 12345678899955666666667789999998
Q ss_pred CCCCCCCCCCc--eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 270 RKLTSDGVGSP--IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 270 ~~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.. ... +..... ......++|+|+|++|+++-...+.|..++...
T Consensus 256 ~~------~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TT------QETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TT------TEEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CC------CcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 76 332 222222 234689999999998877877889999988663
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.50 E-value=0.0056 Score=55.90 Aligned_cols=145 Identities=7% Similarity=-0.046 Sum_probs=91.7
Q ss_pred ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--CCceeeecccCcceEEEEe
Q 046899 170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS--TPAVKVEKAHNADIHCVDW 247 (407)
Q Consensus 170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~ 247 (407)
.+....|+..++........ ......+..|+|++.+..++++-...+.|+.+++.... ................+++
T Consensus 88 ~~~~~~I~~i~l~~~~~~~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 166 (400)
T 3p5b_L 88 FTNRHEVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 166 (400)
T ss_dssp EEETTEEEEECTTSCSCEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred EeccceeEEEccCCcceeEe-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence 34445666666665444333 33456788999998764677777778899999987521 0022233223445678888
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC-CCeEEEEeCCCC
Q 046899 248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGILNIWDHEKI 321 (407)
Q Consensus 248 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~-d~~i~vwd~~~~ 321 (407)
++.+++++++-...+.|.+.++.. ......+...-.....|+++|.+.+|+.+-.. .+.|...++...
T Consensus 167 D~~~~~lY~~d~~~~~I~~~~~~g------~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 167 DWIHSNIYWTDSVLGTVSVADTKG------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTT------CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred EecCCceEEEECCCCeEEEEeCCC------CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 874566666666778999999875 33333333334457999999977777766533 478888888753
No 271
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.50 E-value=0.0056 Score=58.73 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
+|.|..||+.+ ++.+.++... .++....+...+..++ .++.|+.|+.+|.++++.+-++..
T Consensus 443 ~g~l~a~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v~-~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTT------GKAKWTKWEK-FAAWGGTLYTKGGLVW-YATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEEE-EECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCC------CCEEEEecCC-CCccceeEEECCCEEE-EEcCCCeEEEEECCCCCEEEEEeC
Confidence 57899999998 7877776532 2222222232344465 688999999999999988866654
No 272
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.47 E-value=0.0026 Score=62.31 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=88.5
Q ss_pred CCCCCCCCcCceeeEee--cc-------cCEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCCCCceeeecccC-----
Q 046899 176 DKPLESPSIGARGKYLG--HE-------DTVEDVQFCPSSA--QEFCSVGDDSCLILWDARSGSTPAVKVEKAHN----- 239 (407)
Q Consensus 176 i~i~d~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----- 239 (407)
+..+|..+++.+-.++. |. .+.....+..++. ..++.++.+|.+.++|.++++ .+.......
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~--~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK--LISAEKFGKVTWAE 349 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC--EEEEEESSCCCSEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC--Eecccccccccccc
Confidence 66678888887766653 21 2222222222441 268889999999999999988 331111000
Q ss_pred -------cce------------------------EEEEecCCCCCEEEEE------------------------------
Q 046899 240 -------ADI------------------------HCVDWNPHDVNLILTG------------------------------ 258 (407)
Q Consensus 240 -------~~v------------------------~~l~~~~~~~~~l~tg------------------------------ 258 (407)
.++ ..++++| +..+++..
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 000 1256777 44444431
Q ss_pred ------eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899 259 ------SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL 330 (407)
Q Consensus 259 ------~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 330 (407)
..+|.|..||+.+ ++.+.+...+. ++....+...+..+| .++.|+.++.||.++++.+-.+...
T Consensus 429 ~~~p~~~~~g~l~A~D~~t------G~~~W~~~~~~-~~~~~~~~t~gg~vf-~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVK------QKAAWKVPYPT-HWNGGTLSTAGNLVF-QGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CCCCGGGCEEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTTEEE-EECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCCCCccceEEEEeCCC------CcEEEEccCCC-CCcCceeEeCCCEEE-EECCcccchhhhhhcChhheEecCC
Confidence 1347899999998 88877765432 333333444566454 7889999999999999888766543
No 273
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.37 E-value=0.0003 Score=69.28 Aligned_cols=115 Identities=5% Similarity=-0.078 Sum_probs=74.5
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-CcEEEEeCCCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-NSIHMFDRRKLTSD 275 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-g~i~vwd~~~~~~~ 275 (407)
...|++.+.+.+++++-...+.|.++++.... ..............|+++|.++.++++-... +.|.++++..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG---- 528 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---- 528 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS----
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC----
Confidence 45678886554667776677899999987544 2222222234457889998445444443333 6788887764
Q ss_pred CCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 276 GVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 276 ~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.....+. ..-...+.|+|+|++..|+++-+..+.|..+|+..
T Consensus 529 ---~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 529 ---VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp ---CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred ---CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 2222221 12234678999998888887877888999999874
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.28 E-value=0.024 Score=49.46 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=66.4
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 046899 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARS-GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD 275 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~ 275 (407)
.+.| +|++..++++-...+.|..+|+.. +.......+. .......+++++ +++++++....+.|.++|..
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~----- 241 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD----- 241 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-----
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-----
Confidence 3455 677745667777788999999875 3211111111 113456788999 88887777778899999865
Q ss_pred CCCCc--eeeecCCCCCEEEEEEc---CCCCCEEEEeeC
Q 046899 276 GVGSP--IHKFEGHSAAVLCVQWS---PDKSSVFGSSAE 309 (407)
Q Consensus 276 ~~~~~--~~~~~~h~~~v~~v~~~---~~~~~ll~s~~~ 309 (407)
++. +..+...-...++++|. |++..|+++...
T Consensus 242 --G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 242 --RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 344 22343333568999998 888888766653
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.26 E-value=0.0055 Score=53.99 Aligned_cols=118 Identities=11% Similarity=-0.005 Sum_probs=78.8
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~ 274 (407)
.....++|++.+..++.+-...+.|..+++...... .......-.....+++++.+++++++-...+.|.++++..
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--- 110 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--- 110 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC---
Confidence 456789999865477777778899999998765421 1122222234567888874566666666778999999875
Q ss_pred CCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCC
Q 046899 275 DGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEK 320 (407)
Q Consensus 275 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~ 320 (407)
.....+ ...-.....+++.|.+.+|+.+-. ..+.|...++..
T Consensus 111 ----~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 111 ----SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp ----CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred ----CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 223333 233456789999997776775553 357888888764
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.26 E-value=0.011 Score=57.88 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=59.0
Q ss_pred EEEEECCCCCcEEEEEeCCC-----------cEEEEEcCCCCCCceeee--c-ccCcceEEEEecCCCCCEEEEEeCC--
Q 046899 198 EDVQFCPSSAQEFCSVGDDS-----------CLILWDARSGSTPAVKVE--K-AHNADIHCVDWNPHDVNLILTGSAD-- 261 (407)
Q Consensus 198 ~~l~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~--~-~~~~~v~~l~~~~~~~~~l~tg~~d-- 261 (407)
.++.|...+..+++.|+.++ .|.+||..+... .... . .....-.++...| ++++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRG 478 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECC-CCCEEEECCcccC
Confidence 44455443337888887543 678888877652 2211 1 1122223445567 88999999865
Q ss_pred ---------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 262 ---------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 262 ---------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
..+.+||..+.. +..+..+...........+.|+++ +++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~----W~~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCc----eeecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence 468999987622 222222222222333455678888 6678774
No 277
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.25 E-value=0.024 Score=49.87 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=73.1
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC----------CCcEE
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA----------DNSIH 265 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~----------dg~i~ 265 (407)
..+.|+++|++..++++-+..+.|..|++..........+....+ ...+++++ ++++.++... .+.|.
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEE
Confidence 345799999983355555667899999987532111122111223 67899999 7777666544 46788
Q ss_pred EEeCCCCCCCCCCCceeeecCCC----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 266 MFDRRKLTSDGVGSPIHKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 266 vwd~~~~~~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.+|.. ++.+..+.... ..++++++. ++. |+++....+.|..+++..
T Consensus 264 ~~d~~-------G~~~~~~~~~~g~~~~~~~~~~~~-~g~-L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 264 KFDEF-------GNILEVIPLPPPFAGEHFEQIQEH-DGL-LYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECTT-------SCEEEEEECCTTTTTSCCCEEEEE-TTE-EEEECSSCSEEEEEEC--
T ss_pred EECCC-------CCEEEEEECCCCCccccceEEEEe-CCE-EEEeecCCCceEEEeccc
Confidence 88864 46666665432 346777763 454 777777788999999874
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.24 E-value=0.0028 Score=63.06 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=73.1
Q ss_pred CEEEEEEC-CCCCcEEE-EEeCCC----cEEEEEcCCC-CCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----Cc
Q 046899 196 TVEDVQFC-PSSAQEFC-SVGDDS----CLILWDARSG-STPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NS 263 (407)
Q Consensus 196 ~v~~l~~~-~~~~~~l~-s~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~ 263 (407)
.+...+|+ |+| ++++ +...+| .|+++|+.++ +. ....+. .....+.|+| |++.|+....+ ..
T Consensus 175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEe-CCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCE
Confidence 57789999 999 5555 444333 4999999988 52 111111 1134688999 87777666554 25
Q ss_pred EEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCCC
Q 046899 264 IHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEKI 321 (407)
Q Consensus 264 i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~~ 321 (407)
|.++++.+.. .+....+. ........+.|+|||++|+.+... ...|.++|+.+.
T Consensus 249 v~~~~lgt~~----~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 249 VWRHVMGKLQ----SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEETTSCG----GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCc----hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 7788887621 11122222 233456788999999988655543 356888898865
No 279
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.17 E-value=0.014 Score=57.98 Aligned_cols=140 Identities=6% Similarity=-0.040 Sum_probs=87.6
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCC
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHD 251 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~ 251 (407)
..|+..++....... +......+..|+|++.+..++++-...+.|+.+++..... .....+.........|++++.+
T Consensus 404 ~~Ir~i~l~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp SSEEEECTTSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred cceeEeeccCCccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 444445554433322 2334556789999986547777777788999999875310 0122332233456678888744
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCCC
Q 046899 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEKI 321 (407)
Q Consensus 252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~~ 321 (407)
++++++-...+.|.+.++.. .....+ ...-.....|+++|.+.+|+.+-... +.|...++...
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG-------~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKG-------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp TEEEEEETTTTEEEEEETTS-------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CcEEEEecCCCeEEEEeCCC-------CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 56666666778999999875 333333 23344689999999877787665444 78999988753
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.0034 Score=57.98 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=78.6
Q ss_pred CEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC----cEEEEeC
Q 046899 196 TVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN----SIHMFDR 269 (407)
Q Consensus 196 ~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg----~i~vwd~ 269 (407)
....|+++| ++.. |+.+...+.|+.+|+..+. +..+.........|++++ +++.|+.+.. ++ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence 446789998 3424 4444444889999988655 333333455678999999 8885555554 22 3444543
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcCc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSD 342 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d 342 (407)
... ......+.. ......++++|++.+|+++-..++.|..++............ ......+++|+|+
T Consensus 213 ~g~-----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd 280 (430)
T 3tc9_A 213 ESG-----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS 280 (430)
T ss_dssp GGT-----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT
T ss_pred CCc-----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC
Confidence 321 121123322 234578899994444777777789999999886443111111 1122345666665
No 281
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.10 E-value=0.034 Score=49.04 Aligned_cols=131 Identities=14% Similarity=0.197 Sum_probs=85.6
Q ss_pred cCEEEEEE--CCCC-CcEEEEEeCCCcEEEEEcCC---CC--CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899 195 DTVEDVQF--CPSS-AQEFCSVGDDSCLILWDARS---GS--TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266 (407)
Q Consensus 195 ~~v~~l~~--~~~~-~~~l~s~~~dg~i~iwd~~~---~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v 266 (407)
..+..+++ +|.. ..++++...+|.+..|++.. +. ...+..+ ...+.+-.+..++ ....|+.+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADD-EYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcC-CCCeEEEecccceEEE
Confidence 45566777 7754 23677888899999999843 21 1133443 3356788888988 7788889888877777
Q ss_pred EeCCCCCCCCCCCceeeec-CC-CCCEEEEEE--cCCCC-CEEEEeeCCCeEEEEeCC-CCCcccccc
Q 046899 267 FDRRKLTSDGVGSPIHKFE-GH-SAAVLCVQW--SPDKS-SVFGSSAEDGILNIWDHE-KIGEKQDYG 328 (407)
Q Consensus 267 wd~~~~~~~~~~~~~~~~~-~h-~~~v~~v~~--~~~~~-~ll~s~~~d~~i~vwd~~-~~~~~~~~~ 328 (407)
+|.+.... ..++.+..+. ++ ...+..|++ .++++ |||+|+-.+++..+||.. +.+.+..+.
T Consensus 206 ~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 206 FSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 77553110 0033454442 22 246888888 55666 788888778999999997 555566664
No 282
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.08 E-value=0.17 Score=48.97 Aligned_cols=200 Identities=8% Similarity=-0.054 Sum_probs=113.3
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------CCcEEEEeccccccccccCCCCCc
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAAEPGSAK 156 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~~~~~~~ 156 (407)
-..+..|+|.+.++.++.+-..++.|..+++........+... ...|.. .+.+.+-|.
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-~~~P~GlAvD~~~~~LY~tD~--------------- 99 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-LDYPEGMAVDWLGKNLYWADT--------------- 99 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEET---------------
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-CCCcceEEEEeCCCEEEEEEC---------------
Confidence 3568899999978888888888899999998754322222111 111110 111111111
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE-eCCCcEEEEEcCCCCCCceeee
Q 046899 157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV-GDDSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~ 235 (407)
..+.|.+.+.............-.....|+++|....++++- +..+.|...++.... ...+
T Consensus 100 ---------------~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l 161 (628)
T 4a0p_A 100 ---------------GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTL 161 (628)
T ss_dssp ---------------TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEE
T ss_pred ---------------CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEE
Confidence 112222222221111111112334568999998653555554 235788888876544 2222
Q ss_pred cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315 (407)
Q Consensus 236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v 315 (407)
...-...+.|++++.++++..+=...+.|..+|+.. ... ..+...-.....+++.. .+|+.+-...+.|..
T Consensus 162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG------~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG------LNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIER 232 (628)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC------Cce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEE
Confidence 234456789999993344444445567899999875 222 33333334456888865 347777777899999
Q ss_pred EeCCCCCccc
Q 046899 316 WDHEKIGEKQ 325 (407)
Q Consensus 316 wd~~~~~~~~ 325 (407)
.|..+++...
T Consensus 233 ~dk~tg~~~~ 242 (628)
T 4a0p_A 233 ANKTSGQNRT 242 (628)
T ss_dssp EETTTCCSCE
T ss_pred EECCCCCceE
Confidence 9977665443
No 283
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.01 E-value=0.33 Score=48.49 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=87.9
Q ss_pred cccccCCCCCCCCCCCCcCceeeEee--------cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLG--------HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-- 236 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 236 (407)
+-.|+.++.+..++..+++....... ....|.++...+++ .+|..|+.++-|..+|..+++ ...+.
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~---~~~~~~~ 445 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQ---VENFNQR 445 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCC---EEEECTT
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCc---EEEeecC
Confidence 44456666777777765543222111 23578999988877 546667777789999988766 22221
Q ss_pred ---ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-------CCCCCEEEEEEcCCCCCEEEE
Q 046899 237 ---AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-------GHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 237 ---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~ll~s 306 (407)
.....|.++..++ ++++.+ |+.+ -+.+||..+ ++ ...+. .....|.++...++|. |. .
T Consensus 446 ~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~------~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-i 513 (795)
T 4a2l_A 446 NSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQ------RS-FTTIEKEKDGTPVVSKQITTLFRDSHKR-LW-I 513 (795)
T ss_dssp TSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTT------TE-EEECCBCTTCCBCCCCCEEEEEECTTCC-EE-E
T ss_pred CCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCC------Ce-EEEccccccccccCCceEEEEEECCCCC-EE-E
Confidence 1345789999888 666544 4444 488899876 32 22221 1246799999999998 44 3
Q ss_pred eeCCCeEEEEeCCCCC
Q 046899 307 SAEDGILNIWDHEKIG 322 (407)
Q Consensus 307 ~~~d~~i~vwd~~~~~ 322 (407)
|+. +-+..||..+.+
T Consensus 514 gt~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 514 GGE-EGLSVFKQEGLD 528 (795)
T ss_dssp EES-SCEEEEEEETTE
T ss_pred EeC-CceEEEeCCCCe
Confidence 444 458888877643
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.99 E-value=0.054 Score=49.88 Aligned_cols=116 Identities=13% Similarity=0.136 Sum_probs=70.8
Q ss_pred cCEEEEEECCCCCcEEEEEeCC---C-cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDD---S-CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 270 (407)
.....|++++++ +++++.... . .+...+...... ....+ ........++++|.+++++++-..++.|+.+|..
T Consensus 182 ~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 182 GQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRASGFT-ERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp SCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGGTTC-CEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCccEEEECCCC-CEEEEcCCCCcccceEEEEECCCCee-ccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 457899999999 555555422 1 233333322221 01111 1233446788888556666665667889999987
Q ss_pred CCCCCCCCCceeee-cC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 271 KLTSDGVGSPIHKF-EG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 271 ~~~~~~~~~~~~~~-~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
. +.....+ .. ....-..++|+|++.+|+++-...+.|+.+++.
T Consensus 259 ~------g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 259 T------GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp T------CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred C------CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 5 4442222 11 122335799999999787787778999998865
No 285
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.97 E-value=0.11 Score=50.11 Aligned_cols=117 Identities=4% Similarity=-0.076 Sum_probs=79.3
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTS 274 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~ 274 (407)
....|++.+.+.+++++-...+.|.+.++.... ........-.....|+++|.++.++.+-- ..+.|...++..
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG--- 159 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--- 159 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC---
Confidence 467899988665777777788999999987544 22222233445678999994455555532 246777777764
Q ss_pred CCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 275 DGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 275 ~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
.....+. ..-.....|++++++..|+.+-...+.|...|+...
T Consensus 160 ----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 160 ----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp ----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred ----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 3333332 234467999999988778877777889999998753
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.90 E-value=0.024 Score=49.57 Aligned_cols=156 Identities=11% Similarity=0.088 Sum_probs=96.1
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc----c--CcceEEEEe---cCCCCCEEEEEe-------
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA----H--NADIHCVDW---NPHDVNLILTGS------- 259 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~--~~~v~~l~~---~~~~~~~l~tg~------- 259 (407)
.-.+++|++....++++.-..++|..||...+..... .+.. . ...+..|.| .| +++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3457899886635555555799999999875541111 2221 1 114579999 68 677777544
Q ss_pred ------CCCcEEEEeCC---CCCCCCCCCceeeecC-------------CCCCEEEEEEcCCCCCEEEEeeCC-CeEEEE
Q 046899 260 ------ADNSIHMFDRR---KLTSDGVGSPIHKFEG-------------HSAAVLCVQWSPDKSSVFGSSAED-GILNIW 316 (407)
Q Consensus 260 ------~dg~i~vwd~~---~~~~~~~~~~~~~~~~-------------h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vw 316 (407)
.+..+..||+. + ++.+..... -......++..++|. ..++++.- +.|...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~t------g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSEN------SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARV 164 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTT------CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEE
T ss_pred cccccCCCCEEEEEcCCcCCC------CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEE
Confidence 26789999998 5 555543331 113588999999998 66788888 887777
Q ss_pred eCCCCCccccccc------CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 317 DHEKIGEKQDYGE------LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 317 d~~~~~~~~~~~~------~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
+.... ....+.. .....+++++.|| +..|+.....+.|..+|+.
T Consensus 165 ~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pd------------------g~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 165 SADGK-TVSTFAWESGNGGQRPGYSGITFDPH------------------SNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CTTSC-CEEEEEECCCCSSSCCSCSEEEEETT------------------TTEEEEESSSSSEEEEECS
T ss_pred eCCCC-EEeeeeecCCCcccccCcceEEEeCC------------------CCEEEEEcCCCeEEEEcCC
Confidence 76542 2222211 1111334455444 5555544448888888876
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.76 E-value=0.052 Score=45.81 Aligned_cols=120 Identities=8% Similarity=0.190 Sum_probs=79.1
Q ss_pred eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
.+-...+..++|+|++..++++...++.|...|.. ++ ....+. .-....-.|++.+ ++.++++.-.++.+.++++
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--LIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--EEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--EEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 34456799999999875677778889999999987 55 344432 1124567888888 7777666556788999988
Q ss_pred CCCCCCCCCCceeeec------CCCCCEEEEEEcCCCCCEEEEeeCCC-eEEEEe
Q 046899 270 RKLTSDGVGSPIHKFE------GHSAAVLCVQWSPDKSSVFGSSAEDG-ILNIWD 317 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~ll~s~~~d~-~i~vwd 317 (407)
..... ...+.... ..+.....|+|+|.+..|+++.-.+. .|..|+
T Consensus 99 ~~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 99 TPNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CTTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCCe---eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 76210 01122221 13445799999999987876555544 444444
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.092 Score=48.89 Aligned_cols=122 Identities=8% Similarity=0.106 Sum_probs=71.7
Q ss_pred CEEEEEE-------CCCCCcEEEEEeCCC------cEEEEEcCC-CCCCc---eeeecccCcceEEEEecCCCCCEEEEE
Q 046899 196 TVEDVQF-------CPSSAQEFCSVGDDS------CLILWDARS-GSTPA---VKVEKAHNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 196 ~v~~l~~-------~~~~~~~l~s~~~dg------~i~iwd~~~-~~~~~---~~~~~~~~~~v~~l~~~~~~~~~l~tg 258 (407)
....|+| ++++..++++...++ .|.+++... +.... ...+... .....++.+|.++.++++-
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNS 265 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEE
Confidence 4678999 999833444444432 266666333 12110 0122111 2345778899666667777
Q ss_pred eCCCcEEEEeCC-------CCCC------CCC--CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 259 SADNSIHMFDRR-------KLTS------DGV--GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 259 ~~dg~i~vwd~~-------~~~~------~~~--~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
..++.|..+|+. +... ... .+.+.... .....+.|+|+|+|..|+++-.....|+.++..
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 778899999987 3110 000 00122222 234568999999999777677778899997654
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.56 E-value=0.02 Score=52.75 Aligned_cols=117 Identities=9% Similarity=0.123 Sum_probs=69.6
Q ss_pred CEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---C-cEEEEeC
Q 046899 196 TVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---N-SIHMFDR 269 (407)
Q Consensus 196 ~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g-~i~vwd~ 269 (407)
....|+|+|+ +..++++-.. +.|+.+|..++. +..+.........+++++ +++++++.... . .+..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~---v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY---VDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE---EEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE---EEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEEC
Confidence 3468899985 3255544433 899999997766 333334445688999999 77855443311 1 2333433
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 323 (407)
... ......+. .-.....++++|++..|+++-..++.|+.+|..++..
T Consensus 215 ~~~-----~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 215 ASG-----FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp GGT-----TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CCC-----eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 220 11111222 1234577899994444776766788999999886544
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.52 E-value=0.017 Score=53.76 Aligned_cols=117 Identities=11% Similarity=0.109 Sum_probs=73.8
Q ss_pred CEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCCCceeeecc---cCcceEEEEe-------cCCCCCEEEEEeCCC--
Q 046899 196 TVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---HNADIHCVDW-------NPHDVNLILTGSADN-- 262 (407)
Q Consensus 196 ~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~l~~-------~~~~~~~l~tg~~dg-- 262 (407)
....|+|+|. +.+++++-...+.|++.|+.++. ....... .......|+| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence 4678999984 43666666556789999988766 2222221 1235789999 99 777666665543
Q ss_pred -----cEEEEeCCCCCCCCCCC--c-eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899 263 -----SIHMFDRRKLTSDGVGS--P-IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 263 -----~i~vwd~~~~~~~~~~~--~-~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
.|.+++..... ... . ...+.... ....++++|++.+|+++-..++.|..+|+.
T Consensus 217 ~~~~~~V~~i~r~~~G---~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 217 GDESPSVYIIKRNADG---TFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp GGGEEEEEEEECCTTS---CCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred cccCceEEEEecCCCC---ceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 26677633210 011 0 01222111 345788999777788888889999999987
No 291
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.47 E-value=0.82 Score=45.52 Aligned_cols=137 Identities=11% Similarity=0.066 Sum_probs=81.9
Q ss_pred cccCCCCCCCCCCCCcCceeeE---eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcce
Q 046899 169 SKSGGNGDKPLESPSIGARGKY---LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADI 242 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v 242 (407)
.++.++.+..++..+....... ......|.++...+++ . |..|+.++-|..+|.++++ ...+. .....|
T Consensus 378 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~v 452 (781)
T 3v9f_A 378 IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLKK---FQIIELEKNELLDV 452 (781)
T ss_dssp EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS-C-EEEEETTEEEEEECSSSCE---EEECCSTTTCCCCE
T ss_pred EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC-C-EEEEeccCCEEEEcCCCCc---EEEeccCCCCCCeE
Confidence 3444555666665443221111 1134678999988877 4 4557777779999987665 22221 234678
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-----CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-----HSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
.++..++ +++ |..|+. +-+..||..+ .+....... ....|.++...++|. |. .|+.++-+..+|
T Consensus 453 ~~i~~d~-~g~-lwigt~-~Gl~~~~~~~------~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~ 521 (781)
T 3v9f_A 453 RVFYEDK-NKK-IWIGTH-AGVFVIDLAS------KKVIHHYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYT 521 (781)
T ss_dssp EEEEECT-TSE-EEEEET-TEEEEEESSS------SSCCEEECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEEC
T ss_pred EEEEECC-CCC-EEEEEC-CceEEEeCCC------CeEEecccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEe
Confidence 8998887 555 444555 4588899876 332221111 146799999999988 44 344434477788
Q ss_pred CCCC
Q 046899 318 HEKI 321 (407)
Q Consensus 318 ~~~~ 321 (407)
..+.
T Consensus 522 ~~~~ 525 (781)
T 3v9f_A 522 PDMQ 525 (781)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 7653
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.46 E-value=0.34 Score=50.42 Aligned_cols=43 Identities=14% Similarity=-0.024 Sum_probs=32.0
Q ss_pred eEEEeeCCCceEEEEEeCC-----CCeEEEEeeC-CCcEEEEeCcCCCC
Q 046899 76 KFKTIIHPGEVNRIRELPQ-----NSKIVATHTD-SPDVLIWDVEAQPN 118 (407)
Q Consensus 76 ~~~~~~h~~~v~~l~~~~~-----~~~~l~tg~~-dg~i~vwd~~~~~~ 118 (407)
......-.++|.|+++.|. .++++|.|.. |++|+|+++...+.
T Consensus 546 ~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~ 594 (1158)
T 3ei3_A 546 QISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL 594 (1158)
T ss_dssp EEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE
T ss_pred eecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe
Confidence 3344445678999998752 2479999997 99999999986543
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.35 E-value=0.058 Score=47.54 Aligned_cols=147 Identities=6% Similarity=0.063 Sum_probs=92.0
Q ss_pred cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC----CCc--E-EEEEeC--CCcEEEEEcCCCCCCceeeecc
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS----SAQ--E-FCSVGD--DSCLILWDARSGSTPAVKVEKA 237 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~----~~~--~-l~s~~~--dg~i~iwd~~~~~~~~~~~~~~ 237 (407)
++.....+.+.++|+ .++.++.+.. +.++.+..-|. +.. + +++.-. +++|++|++..... .+.....
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~ 118 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTD 118 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSC
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccc
Confidence 444445667888998 7888887753 56777776652 101 2 333333 58999998742221 1322211
Q ss_pred ------cC-cceEEEEe--cCCCCC-EEEEEeCCCcEEEEeCCCCCCC-CCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899 238 ------HN-ADIHCVDW--NPHDVN-LILTGSADNSIHMFDRRKLTSD-GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 238 ------~~-~~v~~l~~--~~~~~~-~l~tg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s 306 (407)
.. ..+..+++ +|..+. ++++...+|.+..|++...... ...+.+++|.. .+.+..+...+...+|+ .
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly-v 196 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY-I 196 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE-E
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE-E
Confidence 11 55677777 774443 6778888899999998431110 00466778775 45788888988877776 7
Q ss_pred eeCCCeEEEEeCC
Q 046899 307 SAEDGILNIWDHE 319 (407)
Q Consensus 307 ~~~d~~i~vwd~~ 319 (407)
+-.|.-|..+|.+
T Consensus 197 ~eEd~GIw~~da~ 209 (355)
T 3amr_A 197 AEEDEAIWKFSAE 209 (355)
T ss_dssp EETTTEEEEEECS
T ss_pred ecccceEEEEeCC
Confidence 7788777777755
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.35 E-value=0.81 Score=44.18 Aligned_cols=117 Identities=5% Similarity=-0.056 Sum_probs=77.7
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTS 274 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~ 274 (407)
....+++.+.+.+++++-+..+.|.+.++.... ........-....+|+++|..+.++.+-. ..+.|...++.-
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~--~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG--- 467 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM--RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG--- 467 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCe--EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC---
Confidence 445788886554777777778999999987544 22222233456789999994455555532 236777777653
Q ss_pred CCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 275 DGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 275 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
.....+ ...-...+.|++++++..|+.+=+..+.|...++...
T Consensus 468 ----~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 468 ----SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp ----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred ----CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 322333 2234567899999987778777677788999998653
No 295
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.35 E-value=0.094 Score=51.20 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=72.6
Q ss_pred EEEECC-CCCcEEEEEeCCC-----------cEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEeC-CCcE
Q 046899 199 DVQFCP-SSAQEFCSVGDDS-----------CLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSA-DNSI 264 (407)
Q Consensus 199 ~l~~~~-~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~-dg~i 264 (407)
..++.| ++ .+++.|+.+. .+.+||..+.+......+. .+.....++++.+ ++.+++.|+. +..+
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCce
Confidence 456667 66 7888887543 5889999988743332221 2233334566667 8899999984 4589
Q ss_pred EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CC-----CeEEEEeCCCCC
Q 046899 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-ED-----GILNIWDHEKIG 322 (407)
Q Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d-----~~i~vwd~~~~~ 322 (407)
.+||..+.. +..+..+..... -.+++..++++ |++.|+ .+ ..+.+||+.+.+
T Consensus 268 ~~yd~~t~~----W~~~~~~~~~R~-~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSSDS----WIPGPDMQVARG-YQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGGTE----EEECCCCSSCCS-SCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcCCc----eeECCCCCcccc-ccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCc
Confidence 999987622 233322322111 23455667877 667887 34 579999998754
No 296
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.29 E-value=0.068 Score=51.30 Aligned_cols=82 Identities=27% Similarity=0.389 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCE-EEE
Q 046899 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV-LCV 294 (407)
Q Consensus 216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v-~~v 294 (407)
+|.|..||+.+++ ........ .++..-.... .+.+++.|+.||.++.||.++ ++.+.+++...... .-+
T Consensus 465 ~G~l~A~D~~tG~--~~W~~~~~-~~~~~g~~~t-agglvf~g~~dg~l~A~D~~t------G~~lW~~~~~~g~~a~P~ 534 (582)
T 1flg_A 465 VGSLRAMDPVSGK--VVWEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKS------GKELWKFQTGSGIVSPPI 534 (582)
T ss_dssp SEEEEEECTTTCC--EEEEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCE
T ss_pred cceEEEEECCCCC--EEEEecCC-CCCcccceEe-CCCEEEEECCCCcEEEEECCC------CCEEEEecCCCCcccCce
Confidence 6889999999988 44433222 1221111111 356777899999999999999 99998887633221 125
Q ss_pred EEcCCCCCEEEEe
Q 046899 295 QWSPDKSSVFGSS 307 (407)
Q Consensus 295 ~~~~~~~~ll~s~ 307 (407)
.|..+|+..+++.
T Consensus 535 ~y~~~G~qYv~~~ 547 (582)
T 1flg_A 535 TWEQDGEQYLGVT 547 (582)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEEEE
Confidence 5556776444433
No 297
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.97 E-value=0.29 Score=47.06 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=88.1
Q ss_pred cccccCCCCCCCCCCCCcCceeeEeeccc----CEEE-EEECCCCCcEEEEEe------CCCcEEEEEcCCCCCCceeee
Q 046899 167 NASKSGGNGDKPLESPSIGARGKYLGHED----TVED-VQFCPSSAQEFCSVG------DDSCLILWDARSGSTPAVKVE 235 (407)
Q Consensus 167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~-l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~ 235 (407)
+..++.++.+.-+|..+++.+-....... .+.+ -.. -++ .++.++ .++.|+-+|.++++ ....+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~--~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD--KVIIGSSGAELGVRGYLTAYDVKTGE--QVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT--EEEECCBCGGGTCCCEEEEEETTTCC--EEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC--EEEEEecccccCCCCeEEEEECCCCc--EEEEE
Confidence 45566677888888888887655432210 1111 011 133 344444 37999999999988 33333
Q ss_pred cccCcc-------------------------------------e-EEEEecCCCCCEEEEEeCC----------------
Q 046899 236 KAHNAD-------------------------------------I-HCVDWNPHDVNLILTGSAD---------------- 261 (407)
Q Consensus 236 ~~~~~~-------------------------------------v-~~l~~~~~~~~~l~tg~~d---------------- 261 (407)
...... + ..+++++ ...+++.+..+
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCcccc
Confidence 211100 0 1345566 55667766654
Q ss_pred CcEEEEeCCCCCCCCCCCceeeecC--CC--------CCEEEEEEc-CCCC--CEEEEeeCCCeEEEEeCCCCCcccc
Q 046899 262 NSIHMFDRRKLTSDGVGSPIHKFEG--HS--------AAVLCVQWS-PDKS--SVFGSSAEDGILNIWDHEKIGEKQD 326 (407)
Q Consensus 262 g~i~vwd~~~~~~~~~~~~~~~~~~--h~--------~~v~~v~~~-~~~~--~ll~s~~~d~~i~vwd~~~~~~~~~ 326 (407)
+.|..+|.++ ++.+..++. |. .++. +... .+|+ .+++.++.+|.+.+.|.++++.+-.
T Consensus 278 ~sv~Ald~~T------G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 278 MTIFGRDADT------GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp SEEEEEETTT------CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ceEEEEeCCC------CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 3799999998 888877654 21 2222 2222 4563 3556788999999999999877643
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.70 E-value=1.6 Score=42.11 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=78.8
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--cEEEEeCCCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--SIHMFDRRKL 272 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~ 272 (407)
..+..|++...+.+++++-+..+.|.+.++. ++. .............+|+++|..+.++.+-.... .|...++.-
T Consensus 389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~-~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG- 465 (628)
T 4a0p_A 389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS-VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG- 465 (628)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE-EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS-
T ss_pred CCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe-EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-
Confidence 3577899988765777788888999999986 331 12222233456889999995566555543333 566666653
Q ss_pred CCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 273 TSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 273 ~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.....+ ...-...+.|++.+.+..|+.+-+..+.|...|+..
T Consensus 466 ------~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG 508 (628)
T 4a0p_A 466 ------TEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 508 (628)
T ss_dssp ------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ------CCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 333333 222346799999998877876666678999999864
No 299
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.54 E-value=2.2 Score=42.45 Aligned_cols=139 Identities=6% Similarity=-0.014 Sum_probs=82.5
Q ss_pred cccCCCCCCCCCCCCcCceeeEe---ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcce
Q 046899 169 SKSGGNGDKPLESPSIGARGKYL---GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADI 242 (407)
Q Consensus 169 ~~~~~~~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v 242 (407)
.++.++.+..++..+++.. .+. .....|.++...+++ . |..|+. +-|..+|..+++........ .....|
T Consensus 422 igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i 497 (781)
T 3v9f_A 422 FGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFV 497 (781)
T ss_dssp EEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCE
T ss_pred EEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCeEEecccCccccccccee
Confidence 3444445556665544322 221 134579999998887 5 444555 56889998876521111111 113578
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC----CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
.++..++ ++++.+ |+.++-+..||.+. .....+.. ....|.++...++|. |. .|+.+|.|..||.
T Consensus 498 ~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~-------~~~~~~~~~~~l~~~~i~~i~~d~~g~-lW-i~T~~Glv~~~d~ 566 (781)
T 3v9f_A 498 RSIAQDS-EGRFWI-GTFGGGVGIYTPDM-------QLVRKFNQYEGFCSNTINQIYRSSKGQ-MW-LATGEGLVCFPSA 566 (781)
T ss_dssp EEEEECT-TCCEEE-EESSSCEEEECTTC-------CEEEEECTTTTCSCSCEEEEEECTTSC-EE-EEETTEEEEESCT
T ss_pred EEEEEcC-CCCEEE-EEcCCCEEEEeCCC-------CeEEEccCCCCCCCCeeEEEEECCCCC-EE-EEECCCceEEECC
Confidence 9999888 666544 45433477788765 23333321 245799999999988 44 3444665588998
Q ss_pred CCCC
Q 046899 319 EKIG 322 (407)
Q Consensus 319 ~~~~ 322 (407)
.+.+
T Consensus 567 ~~~~ 570 (781)
T 3v9f_A 567 RNFD 570 (781)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 7643
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.52 E-value=0.49 Score=42.80 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=76.8
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc----------eeeecc------cCcceEEEEecCCC--CCEEEE
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA----------VKVEKA------HNADIHCVDWNPHD--VNLILT 257 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~------~~~~v~~l~~~~~~--~~~l~t 257 (407)
.|..+..+|+| .+||..+ +..|.+-.+..+.... .+.+.- ...+|..+.|+|-. +..|++
T Consensus 67 ~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 57789999999 7777775 5689998887332100 111111 24679999999943 448899
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCceeeec---------CCCCCEEEEEEcCCCCCEEE-EeeCCCeEEEE
Q 046899 258 GSADNSIHMFDRRKLTSDGVGSPIHKFE---------GHSAAVLCVQWSPDKSSVFG-SSAEDGILNIW 316 (407)
Q Consensus 258 g~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~h~~~v~~v~~~~~~~~ll~-s~~~d~~i~vw 316 (407)
-..|+.|++||+.... .+|. .+. .....|.+++|.+++-.|.+ +....|.|.-.
T Consensus 145 LtsD~~Ir~yDl~~s~----~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQ----EKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EETTSCEEEEETTCTT----SCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EecCCEEEEEEcccCC----CCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999998732 2333 332 23367899999998766653 23467777654
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.30 E-value=1.4 Score=38.63 Aligned_cols=118 Identities=12% Similarity=0.175 Sum_probs=64.2
Q ss_pred cccCEEEEEECCCCCcEEEEEeCCCcEE-EEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLI-LWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
....+..+.+.|++ .+++.+. +|.+. -.|-. +.. -..........+..+.+.+ ++.+++ ++.+|.+++.+...
T Consensus 161 ~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~g-G~t-W~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 161 AIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPG-QTA-WEPHNRTTSRRLHNMGFTP-DGRLWM-IVNGGKIAFSDPDN 234 (327)
T ss_dssp CCCCEEEEEECTTS-CEEEEET-TSSEEEEECTT-CSS-CEEEECCSSSCEEEEEECT-TSCEEE-EETTTEEEEEETTE
T ss_pred CCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCC-CCc-eeECCCCCCCccceeEECC-CCCEEE-EeCCceEEEecCCC
Confidence 34578899999987 6666654 45443 33421 120 1112234456788899988 666554 45678887764221
Q ss_pred CCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 272 LTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 272 ~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
-. ....+..- ..+...+.++++.+++. +++.+ .++.| ++....++
T Consensus 235 G~---tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 235 SE---NWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG-GAGAL-LCSQDGGQ 280 (327)
T ss_dssp EE---EECCCBCTTSSCCSCEEEEEESSSSC-EEEEE-STTCE-EEESSTTS
T ss_pred CC---eeEeccCCcccCCcceEEEEecCCCE-EEEEe-CCCeE-EEeCCCCc
Confidence 00 01221111 01234589999998776 55444 46766 44444443
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.23 E-value=1.3 Score=39.32 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=66.5
Q ss_pred cCEEEEEECCCCCcEEEEEeC-----------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE
Q 046899 195 DTVEDVQFCPSSAQEFCSVGD-----------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT 257 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t 257 (407)
...+.+.+.++| .++++... .|.|.-+|. ++ .. .....-...+.++|+| +++.|+.
T Consensus 165 ~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--~~-~~~~~l~~pNGia~sp-Dg~~lYv 237 (355)
T 3sre_A 165 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--VR-VVAEGFDFANGINISP-DGKYVYI 237 (355)
T ss_dssp SSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--CE-EEEEEESSEEEEEECT-TSSEEEE
T ss_pred CCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce--EE-EeecCCcccCcceECC-CCCEEEE
Confidence 367899999998 66665431 244554544 33 22 2222334568999999 8876665
Q ss_pred Ee-CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC-CCCCEEEEeeCC-CeEEEEeCC
Q 046899 258 GS-ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP-DKSSVFGSSAED-GILNIWDHE 319 (407)
Q Consensus 258 g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ll~s~~~d-~~i~vwd~~ 319 (407)
+. ..+.|..|++..... ......+. .....-.++..+ +|. +.+++..+ +.|..||..
T Consensus 238 adt~~~~I~~~~~~~~g~---l~~~~~~~-~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWT---LTPLRVLS-FDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEGGGTEEEEEEECTTSC---EEEEEEEE-CSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCTT
T ss_pred EeCCCCeEEEEEECCCCc---EecCEEEe-CCCCCceEEEeCCCCc-EEEEecCCceEEEEECCC
Confidence 54 568999999874210 11223342 245678889998 587 54445433 344444443
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.22 E-value=1 Score=40.70 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCcEEEEEcCCCCCCceeeeccc----CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC------Cceeeec
Q 046899 216 DSCLILWDARSGSTPAVKVEKAH----NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG------SPIHKFE 285 (407)
Q Consensus 216 dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~------~~~~~~~ 285 (407)
++.||.-++.... ..+.+..- -..+..+..+| +|++||..+ +..|.|..+......... -..+.+.
T Consensus 40 ~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~ 115 (452)
T 3pbp_A 40 DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYS 115 (452)
T ss_dssp TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEE
T ss_pred CCEEEEEECCCCC--cceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEE
Confidence 5889998887544 24333322 23678899999 999999886 457888887632111000 1112222
Q ss_pred C------CCCCEEEEEEcCCCCC--EEEEeeCCCeEEEEeCCC
Q 046899 286 G------HSAAVLCVQWSPDKSS--VFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 286 ~------h~~~v~~v~~~~~~~~--ll~s~~~d~~i~vwd~~~ 320 (407)
- ...+|..+.|||-+.. -|++-..|++||+||+..
T Consensus 116 l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 116 IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 1 2578999999996532 346888899999999996
No 304
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.02 E-value=2.1 Score=45.05 Aligned_cols=198 Identities=11% Similarity=0.154 Sum_probs=114.9
Q ss_pred CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc----CcceEEEEe
Q 046899 172 GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH----NADIHCVDW 247 (407)
Q Consensus 172 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~ 247 (407)
....+.|+|+.+.+.+..+.- ...|.-=+|-... .|+-.+ +..|.-|++..... +.+.+.-| ...|..-..
T Consensus 84 ag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~-P~k~fdR~~~L~~~QIinY~~ 158 (1630)
T 1xi4_A 84 AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFDRHSSLAGCQIINYRT 158 (1630)
T ss_pred cCCeEEEeehHHhhhhccccc-CCCceEEEecCCC--eeEEEc-CCeEEEeccCCCCc-cHHHHhcchhcccCeeEEeee
Confidence 366777888877766666543 3467677786654 344443 46899999975433 34444444 456767777
Q ss_pred cCCCCCEEEEEe-------CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc--CCCCCEEEEeeC---CCeEEE
Q 046899 248 NPHDVNLILTGS-------ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS--PDKSSVFGSSAE---DGILNI 315 (407)
Q Consensus 248 ~~~~~~~l~tg~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~ll~s~~~---d~~i~v 315 (407)
++ +.++++..| -.|.+.+|..+. +..+.+.||.+.-..+... +....||+-+.. .+.++|
T Consensus 159 d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 159 DA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred CC-CCCeEEEEeeccCCCcccceeeeeeccc-------ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 77 777766433 358899999885 5566677776554444432 222235443322 268999
Q ss_pred EeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899 316 WDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD 394 (407)
Q Consensus 316 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 394 (407)
-++..... .-+........+.|.|+. ...-..++.+.. .-+.|...+.-|.|+++|+. ++.++..-+
T Consensus 231 ~Ei~~~~~--~~~~f~kk~~~~~~~~~~---~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~------t~~~i~~~r 297 (1630)
T 1xi4_A 231 IEVGTPPT--GNQPFPKKAVDVFFPPEA---QNDFPVAMQISE-KHDVVFLITKYGYIHLYDLE------TGTCIYMNR 297 (1630)
T ss_pred EecCCCcc--CCCCCccccccccCCccc---ccCcceEEEecc-ccCEEEEEecCceEEEEecc------cchhhhhcc
Confidence 99865301 012222223455565541 111111222222 23456677888899999999 777776544
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.54 E-value=1.1 Score=39.78 Aligned_cols=108 Identities=7% Similarity=0.078 Sum_probs=60.6
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee---cccCcceEEEEecCCC----CCEEEEEeCC-----
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE---KAHNADIHCVDWNPHD----VNLILTGSAD----- 261 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~----~~~l~tg~~d----- 261 (407)
-..-..|+|.|+| .++++ ..+|.|.+++ .+....+... .........|+++| + +.+.++-...
T Consensus 30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSE
T ss_pred CCCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCc
Confidence 3456799999999 65554 5669999998 3331111111 11234678999999 5 4444443322
Q ss_pred CcEEEEeCCCCCCCCCCCc-eeeec---CCCCCEEEEEEcCCCCCEEEEee
Q 046899 262 NSIHMFDRRKLTSDGVGSP-IHKFE---GHSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 262 g~i~vwd~~~~~~~~~~~~-~~~~~---~h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
+.|..|+.....- ...+. +..+. ........++|.|+|. |+++.+
T Consensus 105 ~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 153 (352)
T 2ism_A 105 NQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG 153 (352)
T ss_dssp EEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred cEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence 5788887763100 00111 22233 1112346899999996 665643
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.28 E-value=2.3 Score=36.41 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=55.2
Q ss_pred cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCC
Q 046899 208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGV 277 (407)
Q Consensus 208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~ 277 (407)
.+++.|+.+ ..+.+||+.+.+......+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~---- 233 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS---- 233 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc----
Confidence 677777654 4588999887663212111111111122222 56778888764 468999998632
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI 321 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 321 (407)
+..+..+.........+.+ ++. |++.|+.+ ..+.+||+++.
T Consensus 234 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 234 WTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCC
Confidence 3333322221112222222 444 66677765 45778887763
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.08 E-value=2.7 Score=36.58 Aligned_cols=142 Identities=11% Similarity=0.084 Sum_probs=88.0
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEEC--CCCCcEEEEEeC---CCcEEEEEcCCC---CCCceee-----e--ccc
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFC--PSSAQEFCSVGD---DSCLILWDARSG---STPAVKV-----E--KAH 238 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~l~s~~~---dg~i~iwd~~~~---~~~~~~~-----~--~~~ 238 (407)
|.+.++..+. +..+.+.+|-.....+... +....+|+-+.. .+++++-++... ..+..+. + ...
T Consensus 180 G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~ 258 (365)
T 2xzh_A 180 GAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 258 (365)
T ss_dssp EEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCT
T ss_pred eeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcccc
Confidence 4444554433 2345566776555444432 112134444433 368999998543 1111110 1 112
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
.+-..++..++ ....++.-+.-|.|.+||+.+ +.++..-+-...+|..-+-+.....++ .-...|.|.--.+
T Consensus 259 ~DFPVamqvs~-kygviyviTK~G~ihlyDleT------gt~i~~nrIS~d~iF~ta~~~~~~Gi~-~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 259 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCV 330 (365)
T ss_dssp TCCEEEEEEET-TTTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEEGGGTEEE-EEETTCEEEEEEE
T ss_pred CCceEEEEecc-cCCEEEEEeCCcEEEEEEccc------CcEEEEeccCCCceEEecccCCCCcEE-EEcCCCEEEEEEE
Confidence 34456788888 777888889999999999999 899988877777887777665555565 5567888887777
Q ss_pred CCCCcc
Q 046899 319 EKIGEK 324 (407)
Q Consensus 319 ~~~~~~ 324 (407)
+....+
T Consensus 331 ~~~~iv 336 (365)
T 2xzh_A 331 EEENII 336 (365)
T ss_dssp CTTTHH
T ss_pred CcccEe
Confidence 764433
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.04 E-value=0.17 Score=41.34 Aligned_cols=104 Identities=6% Similarity=0.069 Sum_probs=61.1
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc--------eEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD--------IHCVDWNPHDVNLILTGSADNSIHMF 267 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------v~~l~~~~~~~~~l~tg~~dg~i~vw 267 (407)
.+..++|+|++ .+.+. .+|.+.-.+..+... ....+.... ..++.|+| ++.+.++ .||.|+-+
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~---~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN---DNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT---CCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEE
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc---ccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEe
Confidence 56699999988 55555 667766666544321 111111222 36889999 8887777 56988877
Q ss_pred eCCCCCCCCCCCce---eee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899 268 DRRKLTSDGVGSPI---HKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314 (407)
Q Consensus 268 d~~~~~~~~~~~~~---~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~ 314 (407)
+.-+... ..-+ ..+ ..-=..+..|.|.|+|. |.|. . |+.+.
T Consensus 113 ~pP~~~~---~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav-~-dg~ly 157 (236)
T 1tl2_A 113 SPPQSDT---DNWIARATEVGSGGWSGFKFLFFHPNGY-LYAV-H-GQQFY 157 (236)
T ss_dssp SCCCSTT---CCHHHHSEEEECSSGGGEEEEEECTTSC-EEEE-E-TTEEE
T ss_pred CCCcCCC---CceeccccEeccCCCCceEEEEECCCce-EEEE-e-CCcEE
Confidence 6533110 1110 111 11114679999999998 6544 4 77754
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.67 E-value=3.3 Score=36.09 Aligned_cols=234 Identities=11% Similarity=0.036 Sum_probs=124.1
Q ss_pred eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc
Q 046899 92 LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS 171 (407)
Q Consensus 92 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (407)
+| ..+.||-=. ..++.|+|+++...+....- ...+.+|.--+....- --
T Consensus 75 nP-~~~ViALra-g~~LQiFnletK~klks~~~--------~e~VvfWkWis~~~L~---------------------lV 123 (365)
T 2xzh_A 75 NP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM--------TDDVTFWKWISLNTVA---------------------LV 123 (365)
T ss_dssp CS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC--------SSCEEEEEECSSSEEE---------------------EE
T ss_pred CC-CccEEEEec-CCeEEEechHHhhhhcceec--------CCccEEEEecCCCeEE---------------------EE
Confidence 77 667777665 57899999998766554332 1234455433221100 00
Q ss_pred CCCCCCCCCCC-CcCceeeEeec----ccCEEEEEECCCCCcEEEEEe-------CCCcEEEEEcCCCCCCceeeecccC
Q 046899 172 GGNGDKPLESP-SIGARGKYLGH----EDTVEDVQFCPSSAQEFCSVG-------DDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 172 ~~~~i~i~d~~-~~~~~~~~~~~----~~~v~~l~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
.+..+.-|++. ...++..+.-| ...|-.-..+++. ++++..+ -.|.+.+|..+.+. .+.+++|.
T Consensus 124 T~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGha 199 (365)
T 2xzh_A 124 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHA 199 (365)
T ss_dssp ESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTE---EEEECCSE
T ss_pred cCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCC-CEEEEEeEeccCCccceeEEEEeecccc---cceeeeee
Confidence 11112222222 11233333333 2356666677777 4443332 14788999987654 66777887
Q ss_pred cceEEEEec--CCCCCEEEEEeC---CCcEEEEeCCCCC-CCCCC-Cceee-ec---CCCCCEEEEEEcCCCCCEEEEee
Q 046899 240 ADIHCVDWN--PHDVNLILTGSA---DNSIHMFDRRKLT-SDGVG-SPIHK-FE---GHSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 240 ~~v~~l~~~--~~~~~~l~tg~~---dg~i~vwd~~~~~-~~~~~-~~~~~-~~---~h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
.....+... +...++|+.+.. .+.+++-++..+. ..... +.... +. ...+-..++..++....+ ..-.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygvi-yviT 278 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-FLIT 278 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEE-EEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEE-EEEe
Confidence 655444442 111223443332 2589999986541 11100 11111 11 124456688888877644 4677
Q ss_pred CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899 309 EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379 (407)
Q Consensus 309 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~ 379 (407)
.-|.|.+||++++.++-.-.-...+|.. .+....+..|+...-.|.|.--.++
T Consensus 279 K~G~ihlyDleTgt~i~~nrIS~d~iF~------------------ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCIYMNRISGETIFV------------------TAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEE------------------EEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred CCcEEEEEEcccCcEEEEeccCCCceEE------------------ecccCCCCcEEEEcCCCEEEEEEEC
Confidence 8899999999998887554433333211 1122224456666666666655555
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.97 E-value=1.5 Score=38.89 Aligned_cols=115 Identities=7% Similarity=0.014 Sum_probs=69.8
Q ss_pred CEEEEEECC--CCC-cEEEEEeC--CCcEEEEEcCCCCC--Cceeeeccc-CcceEEEEecCCCCCEEEEEe--------
Q 046899 196 TVEDVQFCP--SSA-QEFCSVGD--DSCLILWDARSGST--PAVKVEKAH-NADIHCVDWNPHDVNLILTGS-------- 259 (407)
Q Consensus 196 ~v~~l~~~~--~~~-~~l~s~~~--dg~i~iwd~~~~~~--~~~~~~~~~-~~~v~~l~~~~~~~~~l~tg~-------- 259 (407)
....|.+.+ ++. .++++-.. +.+|.+|++..... .....+.+. -...+.+.+.+ ++.+.++..
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence 455666644 342 24444333 56788888876432 122222221 23578899999 788777654
Q ss_pred ---------CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 260 ---------ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 260 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
..|.|..+|... .+ .+...-..-+.++|+||++.++++-+..+.|..|++..
T Consensus 192 ~~~e~~~~~~~g~vyr~d~~~------~~---~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSPND------VR---VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHHHTTCCCEEEEEECTTC------CE---EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccchhhccCCccEEEEEECCe------EE---EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 124555555422 11 22212235689999999998988888889999999874
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.89 E-value=2.2 Score=36.56 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=54.4
Q ss_pred cEEEEEeCC-------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCC
Q 046899 208 QEFCSVGDD-------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSD 275 (407)
Q Consensus 208 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~ 275 (407)
.+++.|+.+ ..+.+||+.+.+......+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-- 231 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA-- 231 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE--
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC--
Confidence 566666542 3588999887653222111111111122222 56788888764 368899987622
Q ss_pred CCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-----eEEEEeCCCC
Q 046899 276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----ILNIWDHEKI 321 (407)
Q Consensus 276 ~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-----~i~vwd~~~~ 321 (407)
+..+..+......-..+.+ ++. |++.|+.++ .+.+||+.+.
T Consensus 232 --W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 232 --WRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred --EeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCC
Confidence 3333222211111122222 444 667777653 4888998864
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.12 E-value=6.8 Score=35.65 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=91.7
Q ss_pred CCCCCCCCCCcCceeeEeecccCEEEEEECCC--CCcEEEEEeCC---CcEEEEEcCCC---CCCcee-e----e--ccc
Q 046899 174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDD---SCLILWDARSG---STPAVK-V----E--KAH 238 (407)
Q Consensus 174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~d---g~i~iwd~~~~---~~~~~~-~----~--~~~ 238 (407)
|.+.++..+.. ..+.+.+|-.....+..... ...+|+-+... +++++-++... ..+..+ . + ...
T Consensus 179 G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~ 257 (494)
T 1bpo_A 179 GAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 257 (494)
T ss_dssp EEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred ceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence 44455554432 34566677666555554321 12355555543 78999999654 111111 0 0 122
Q ss_pred CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899 239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318 (407)
Q Consensus 239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~ 318 (407)
.+-..++..++ ....+..-+.-|.|.+||+.+ +.++..-+-...+|..-+-+.....++ .-...|.|.--.+
T Consensus 258 ~DFPvamqvs~-kygviyviTK~G~i~lyDleT------gt~i~~nrIs~~~iF~t~~~~~~~Gi~-~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 258 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCV 329 (494)
T ss_dssp TCCEEEEEEET-TTTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEETTTTEEE-EEETTCEEEEEEE
T ss_pred cCceeEEEecc-cCCEEEEEecCceEEEEeccc------ceeeeeecccCCceEEecccCCCCcEE-EEccCceEEEEEE
Confidence 34456788888 778888889999999999999 899988877777887777766655565 5568888888777
Q ss_pred CCCCcc
Q 046899 319 EKIGEK 324 (407)
Q Consensus 319 ~~~~~~ 324 (407)
.....+
T Consensus 330 ~e~~iv 335 (494)
T 1bpo_A 330 EEENII 335 (494)
T ss_dssp CTTTHH
T ss_pred ccccch
Confidence 764433
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.98 E-value=4.2 Score=34.83 Aligned_cols=104 Identities=10% Similarity=0.085 Sum_probs=54.8
Q ss_pred cEEEEEeC---------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCC
Q 046899 208 QEFCSVGD---------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLT 273 (407)
Q Consensus 208 ~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~ 273 (407)
.+++.|+. -..+.+||+.+.+......+.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 56666653 34588999987763222111111111122222 45677777754 358899988632
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI 321 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 321 (407)
+..+..+.........+.+ ++. |++.|+.+ ..+.+||+.+.
T Consensus 228 ----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 228 ----WKMVSPMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ----EEECCCCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTT
T ss_pred ----EEECCCCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCC
Confidence 3333223222222233333 444 66778744 56888888774
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.95 E-value=3.7 Score=36.19 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=66.1
Q ss_pred eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee----cccCcceEEEEecCC---CCCEEEEE--
Q 046899 188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE----KAHNADIHCVDWNPH---DVNLILTG-- 258 (407)
Q Consensus 188 ~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~~~~---~~~~l~tg-- 258 (407)
..+...-..-..|+|.|+| .+|++--..|.|++++...+....+..+ .........|+++|+ ++.+.++-
T Consensus 25 ~~va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred EEeecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3344445567899999999 6676665589999998765542112111 122456789999992 24333332
Q ss_pred eCCCcEEEEeCCCCC----CCCCCCce-eeecC-CCCCEEEEEEcCCCCCEEEEee
Q 046899 259 SADNSIHMFDRRKLT----SDGVGSPI-HKFEG-HSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 259 ~~dg~i~vwd~~~~~----~~~~~~~~-~~~~~-h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
..++.|.-|...... .....+.+ ..+.. ....-..|+|.|+|. |+++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence 234566666654311 00001112 22321 122346799999997 655654
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.88 E-value=4.4 Score=37.28 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=61.0
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc------cCcceEEEEecCCC---CCEEEEEeC----
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA------HNADIHCVDWNPHD---VNLILTGSA---- 260 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~~~~~---~~~l~tg~~---- 260 (407)
-.....|+|.|+| .++++-...+.|++++..++....+..+.. .......|+|+| + ...|.....
T Consensus 26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEecccc
Confidence 4466799999999 666665444578888765554211222211 235677999999 4 444444332
Q ss_pred ---------CCcEEEEeCCCCCC-CCCCCcee-eecC-CCCCEEEEEEcCCCCCEEEEee
Q 046899 261 ---------DNSIHMFDRRKLTS-DGVGSPIH-KFEG-HSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 261 ---------dg~i~vwd~~~~~~-~~~~~~~~-~~~~-h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
...|.-|+...... ....+.+. .+.. .......|+|.|+|. |+++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 23455565432100 00011122 2222 123578999999998 555544
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.70 E-value=4.9 Score=34.48 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=54.6
Q ss_pred cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCC
Q 046899 208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGV 277 (407)
Q Consensus 208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~ 277 (407)
.+++.|+.+ ..+.+||+.+.+......+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~---- 242 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET---- 242 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc----
Confidence 677777654 4588999887652211111111111222333 56777888765 468999988632
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI 321 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 321 (407)
+..+..+.........+.+ ++. |++.|+.+ ..+.+||+.+.
T Consensus 243 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 243 WTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTT
T ss_pred EEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCC
Confidence 3333222221111122222 444 66677743 45778888764
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=91.59 E-value=1.9 Score=36.92 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=56.1
Q ss_pred cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCC
Q 046899 208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGV 277 (407)
Q Consensus 208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~ 277 (407)
.+++.|+.+ ..+.+||+.+.+...............++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~---- 186 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGH---- 186 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence 677777643 3588999887663222222111111122222 56777887765 458899987632
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCCC
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKIG 322 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~~ 322 (407)
+..+..+.........+.+ ++. |++.|+.+ ..+.+||+.+.+
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--NDH-IYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCCcccccceEEEE--CCE-EEEEeCCCCCcccceEEEEeCCCCc
Confidence 3333222221111222222 344 66778764 468899988743
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=89.96 E-value=1.4 Score=37.76 Aligned_cols=104 Identities=10% Similarity=0.091 Sum_probs=54.2
Q ss_pred cEEEEEeCCC-----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-------CcEEEEeCCCCCCC
Q 046899 208 QEFCSVGDDS-----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-------NSIHMFDRRKLTSD 275 (407)
Q Consensus 208 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-------g~i~vwd~~~~~~~ 275 (407)
.+++.|+.++ .+.+||+.+.+......+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-- 184 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE-- 184 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence 6777777553 578889887653212111111111122222 55777777653 358899987632
Q ss_pred CCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899 276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI 321 (407)
Q Consensus 276 ~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 321 (407)
+..+..+.........+.+ ++. |++.|+.+ ..+.+||+.+.
T Consensus 185 --W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 185 --WTYIAEMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTTT
T ss_pred --EEECCCCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCCC
Confidence 3333222221112222222 444 66777764 46889998864
No 319
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.48 E-value=17 Score=38.59 Aligned_cols=206 Identities=12% Similarity=0.068 Sum_probs=106.5
Q ss_pred eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc
Q 046899 92 LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS 171 (407)
Q Consensus 92 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (407)
+| ..++||-=. ..++.|+|+.+...+....- ...|.+|.--+... +.--
T Consensus 74 nP-~~~iiALra-g~~lQiFnl~~k~klks~~~--------~e~VvfWkWis~~~---------------------l~lV 122 (1630)
T 1xi4_A 74 NP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM--------TDDVTFWKWISLNT---------------------VALV 122 (1630)
T ss_pred CC-CcceEEEec-CCeEEEeehHHhhhhccccc--------CCCceEEEecCCCe---------------------eEEE
Confidence 66 556666654 57999999988765554332 12344554332211 0001
Q ss_pred CCCCCCCCCCCC-cCceeeEeec----ccCEEEEEECCCCCcEEE-EEe------CCCcEEEEEcCCCCCCceeeecccC
Q 046899 172 GGNGDKPLESPS-IGARGKYLGH----EDTVEDVQFCPSSAQEFC-SVG------DDSCLILWDARSGSTPAVKVEKAHN 239 (407)
Q Consensus 172 ~~~~i~i~d~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~~l~-s~~------~dg~i~iwd~~~~~~~~~~~~~~~~ 239 (407)
.+..+.-|++.. ..++..+.-| ...|-.-..+++. ++++ +|- -.|.+.+|..+.+. .+.+.+|.
T Consensus 123 T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~---sQ~iegha 198 (1630)
T 1xi4_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHA 198 (1630)
T ss_pred cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeeccccc---chhhhHhH
Confidence 112223333321 1222222222 2455566667776 4443 332 35889999987655 44556776
Q ss_pred cceEEEEec--CCCCCEEEEEeC---CCcEEEEeCCCC-CCCCCC--CceeeecC---CCCCEEEEEEcCCCCCEEEEee
Q 046899 240 ADIHCVDWN--PHDVNLILTGSA---DNSIHMFDRRKL-TSDGVG--SPIHKFEG---HSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 240 ~~v~~l~~~--~~~~~~l~tg~~---dg~i~vwd~~~~-~~~~~~--~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
+....+... +....+++.+.. .+.++|-++..+ ...+.. +.+..+.. ..+-..++..++....+ ..-+
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~i-y~it 277 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-FLIT 277 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEE-EEEe
Confidence 554444432 212233333222 268999998664 111000 11111111 13334577778776644 4667
Q ss_pred CCCeEEEEeCCCCCcccccccCCCc
Q 046899 309 EDGILNIWDHEKIGEKQDYGELKYP 333 (407)
Q Consensus 309 ~d~~i~vwd~~~~~~~~~~~~~~~~ 333 (407)
.-|.|.++|+.++..+-.-.-...+
T Consensus 278 k~G~~~~~d~~t~~~i~~~ris~~~ 302 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIYMNRISGET 302 (1630)
T ss_pred cCceEEEEecccchhhhhccccCCc
Confidence 7899999999998877554433333
No 320
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.30 E-value=13 Score=34.12 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVE 114 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~ 114 (407)
-...+.|+|.| +++++++-...+.|++++..
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPE 56 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECC
Confidence 45678999999 88877776544567777654
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=89.13 E-value=13 Score=33.87 Aligned_cols=129 Identities=9% Similarity=0.020 Sum_probs=78.0
Q ss_pred cCEEEEEECCCCCcEEEEEe-------CCCcEEEEEcCCCCCCceeeecccCcceEEEEecC--CCCCEEEEEeC---CC
Q 046899 195 DTVEDVQFCPSSAQEFCSVG-------DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP--HDVNLILTGSA---DN 262 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~l~tg~~---dg 262 (407)
..|-.-..+++. ++++..| -.|.+.+|..+.+. .+.+.+|......+...- ....+|+.+.. .+
T Consensus 151 ~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 226 (494)
T 1bpo_A 151 CQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (494)
T ss_dssp CEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred ceEEEEEECCCC-CeEEEEeecccCCcccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 356666677777 4444332 24788999988665 667778877665555532 11234444433 27
Q ss_pred cEEEEeCCCCCCC-CCC-Cceeee-c---CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899 263 SIHMFDRRKLTSD-GVG-SPIHKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG 328 (407)
Q Consensus 263 ~i~vwd~~~~~~~-~~~-~~~~~~-~---~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 328 (407)
.++|-++..+... ... +....+ . ...+-..++..++....+ ..-..-|.|.+||++++.++-.-.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi-yviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-FLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE-EEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE-EEEecCceEEEEecccceeeeeec
Confidence 8999998664111 000 111111 1 123456688888877744 477789999999999988775544
No 322
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=88.89 E-value=4.3 Score=35.93 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=60.0
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee---cccCcceEEEEecCC---CCCEEEEEeC---C---
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE---KAHNADIHCVDWNPH---DVNLILTGSA---D--- 261 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~~~~---~~~~l~tg~~---d--- 261 (407)
-.....|+|.|++ .+++ +..+|.|+++|. .+. ..+..+ .........|+++|. ++.+.++-.. +
T Consensus 28 l~~P~~ia~~pdG-~l~V-~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGG-RYLV-TERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETT-EEEE-EETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCC-eEEE-EeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 3456899999998 6554 456699999873 333 122211 112345789999993 2444444332 3
Q ss_pred -CcEEEEeCCCCCCC-CCCCc-eeeecC-CCCCEEEEEEcCCCCCEEEEee
Q 046899 262 -NSIHMFDRRKLTSD-GVGSP-IHKFEG-HSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 262 -g~i~vwd~~~~~~~-~~~~~-~~~~~~-h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
..|..|+....... ...+. +..+.. .......++|.|+|. |+++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence 56777776541000 00011 122321 112346799999997 655543
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.88 E-value=2.6 Score=39.61 Aligned_cols=129 Identities=8% Similarity=-0.047 Sum_probs=77.8
Q ss_pred CCCCCCCCC----cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC----------CceeeecccCc
Q 046899 175 GDKPLESPS----IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST----------PAVKVEKAHNA 240 (407)
Q Consensus 175 ~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~ 240 (407)
.+.+.|... +..+..+-.-......+..+|+|..++++|-.+.++.++|++.... ..+.....-..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 366677655 3344444444445567899999966666666799999999984210 01111222344
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC----CCCCCCceeeecCCCCCEEEEE-----EcCCCCCEE
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT----SDGVGSPIHKFEGHSAAVLCVQ-----WSPDKSSVF 304 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~----~~~~~~~~~~~~~h~~~v~~v~-----~~~~~~~ll 304 (407)
.....+|++ +|+...|---|..|.-|++.... -+.....+..+.-|-.+-.-.+ -.|+|++|+
T Consensus 379 GPlHt~Fd~-~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv 450 (638)
T 3sbq_A 379 GPLHTTFDG-RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV 450 (638)
T ss_dssp CEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred cccEEEECC-CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence 567899999 88766777789999999986510 0000245556665654432222 246777664
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.28 E-value=8.8 Score=33.82 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=57.5
Q ss_pred ccCEEEEEECCCCCc-EEEEEeCCCcEEEEEcCCCCCCceeee----cccCcceEEEEecCC---CCCEEEEEeC-----
Q 046899 194 EDTVEDVQFCPSSAQ-EFCSVGDDSCLILWDARSGSTPAVKVE----KAHNADIHCVDWNPH---DVNLILTGSA----- 260 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~~~~---~~~~l~tg~~----- 260 (407)
-.....|+|.|++ + +++ +...|.|++++........+... .........|+++|. ++.+.++-..
T Consensus 17 l~~P~~i~~~pdG-~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDN-HGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTT-CCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCC-CEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 3456899999999 6 554 45679999998532110011111 112345689999993 2444444322
Q ss_pred --CCcEEEEeCCCCCCC-CCCCce-eeec---CCCCCEEEEEEcCCCCCEEEEee
Q 046899 261 --DNSIHMFDRRKLTSD-GVGSPI-HKFE---GHSAAVLCVQWSPDKSSVFGSSA 308 (407)
Q Consensus 261 --dg~i~vwd~~~~~~~-~~~~~~-~~~~---~h~~~v~~v~~~~~~~~ll~s~~ 308 (407)
...|..|+....... ...+.+ ..+. ........|+|.|+|. |+++.+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 148 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG 148 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence 235666666431000 000111 1121 1111236799999996 555544
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=87.84 E-value=14 Score=32.60 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=21.2
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIWD 112 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd 112 (407)
-.....|+|.| +++++++ ..+|.|++++
T Consensus 28 l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 28 LEVPWSIAPLG-GGRYLVT-ERPGRLVLIS 55 (354)
T ss_dssp CSCEEEEEEEE-TTEEEEE-ETTTEEEEEC
T ss_pred CCCCeEEEEcC-CCeEEEE-eCCCEEEEEe
Confidence 45678999999 7886665 4558888886
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=87.58 E-value=3.8 Score=35.22 Aligned_cols=104 Identities=11% Similarity=0.096 Sum_probs=54.5
Q ss_pred cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCC
Q 046899 208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGV 277 (407)
Q Consensus 208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~ 277 (407)
.+++.|+.+ ..+.+||+.+.+......+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~---- 195 (308)
T 1zgk_A 123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE---- 195 (308)
T ss_dssp EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence 566666643 4688899887652111111111111122222 45777777765 458899987632
Q ss_pred CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI 321 (407)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 321 (407)
+..+..+......-..+.+ ++. |++.|+.+ ..+.+||+.+.
T Consensus 196 W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred EeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCC
Confidence 2222222221112222333 444 66778765 56889998874
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=86.88 E-value=11 Score=39.40 Aligned_cols=133 Identities=10% Similarity=0.088 Sum_probs=76.6
Q ss_pred CCCCCCCCCcCceeeEeec-ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC--
Q 046899 175 GDKPLESPSIGARGKYLGH-EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD-- 251 (407)
Q Consensus 175 ~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 251 (407)
.+++.+......+..+... ...|...+.+. .+++.++ ++.+.++.+..++.... ........|.|+++.|..
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~-~~~~l~~evscl~i~~~~~~ 567 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIHPQELRQI-SHTEMEHEVACLDITPLGDS 567 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEE-EEEECSSCEEEEECCCCSSS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeee-cccCCCCceEEEEeecCCCC
Confidence 3444444433344444432 23566666554 2344444 67888888876541111 222346689999997622
Q ss_pred ---CCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecC-CCCCEEEEEEc--CCCCCEEEEeeCCCeEEEEeCC
Q 046899 252 ---VNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEG-HSAAVLCVQWS--PDKSSVFGSSAEDGILNIWDHE 319 (407)
Q Consensus 252 ---~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~--~~~~~ll~s~~~d~~i~vwd~~ 319 (407)
+.+++.|.. |++|+|+++.. .+.+....- -.....++.+. ....+|+ .|-.||.+.-+.+.
T Consensus 568 ~~~s~~~aVg~~~d~tv~I~sL~~------l~~~~~~~L~~~~~p~si~l~~~~~~~~L~-igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 568 NGLSPLCAIGLWTDISARILKLPS------FELLHKEMLGGEIIPRSILMTTFESSHYLL-CALGDGALFYFGLN 635 (1158)
T ss_dssp TTCCSEEEEEETTTTEEEEEETTT------CCEEEEEECCSSCCEEEEEEEEETTEEEEE-EEETTSEEEEEEEC
T ss_pred cccccEEEEEECCCCEEEEEECCC------CCeEEEEECCCCCCCcEEEEEEeCCCcEEE-EEeCCCeEEEEEEc
Confidence 479999997 99999999986 455543221 12344455443 2334554 77789987655543
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=86.53 E-value=9.5 Score=32.75 Aligned_cols=104 Identities=8% Similarity=0.052 Sum_probs=54.2
Q ss_pred cEEEEEeCC--------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-C-----CcEEEEeCCCCC
Q 046899 208 QEFCSVGDD--------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-D-----NSIHMFDRRKLT 273 (407)
Q Consensus 208 ~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-d-----g~i~vwd~~~~~ 273 (407)
.+++.|+.+ ..+.+||..+.+......+........++.+ ++.+++.|+. + ..+.+||+.+..
T Consensus 100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 566666632 4588999987652111111111111122222 5677788876 2 468899988632
Q ss_pred CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-----eEEEEeCCCC
Q 046899 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----ILNIWDHEKI 321 (407)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-----~i~vwd~~~~ 321 (407)
+..+..+......-..+.+ ++. |++.|+.++ .+.+||+.+.
T Consensus 177 ----W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 177 ----WKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp ----EEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTT
T ss_pred ----EEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCC
Confidence 2333222221111122222 444 667777654 5888998874
No 329
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=84.94 E-value=8.9 Score=33.79 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=48.1
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec---CCCCCEEEEEEcCC---CCCEEEEeeCC---
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE---GHSAAVLCVQWSPD---KSSVFGSSAED--- 310 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~~~---~~~ll~s~~~d--- 310 (407)
.....++|.| +++++++ ..+|.|++++ .. . .+.+..+. ........|+|+|+ +.+|+++-...
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~-~g-~----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR-EG-R----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE-TT-E----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE-CC-C----ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 3467899999 8885555 5679999998 21 0 22222222 12456899999998 56677665543
Q ss_pred --CeEEEEeCCC
Q 046899 311 --GILNIWDHEK 320 (407)
Q Consensus 311 --~~i~vwd~~~ 320 (407)
+.|..+++..
T Consensus 103 ~~~~v~r~~~~~ 114 (352)
T 2ism_A 103 LRNQVVRLRHLG 114 (352)
T ss_dssp SEEEEEEEEECS
T ss_pred CccEEEEEEeCC
Confidence 6788888764
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=84.49 E-value=21 Score=31.43 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC
Q 046899 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA 115 (407)
Q Consensus 82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 115 (407)
--...+.|+|.| +++++++--..|.|++++...
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~ 62 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKT 62 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTT
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCC
Confidence 356788999999 888887776578898887543
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=82.36 E-value=4.3 Score=35.01 Aligned_cols=104 Identities=9% Similarity=0.119 Sum_probs=54.3
Q ss_pred cEEEEEeC-C-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC-----cEEEEeCCCCCCCC
Q 046899 208 QEFCSVGD-D-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN-----SIHMFDRRKLTSDG 276 (407)
Q Consensus 208 ~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg-----~i~vwd~~~~~~~~ 276 (407)
.+++.|+. + ..+.+||+.+.+......+........++.+ ++.+++.|+.++ .+.+||+.+..
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~--- 223 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK--- 223 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE---
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe---
Confidence 57777765 2 4689999887652211111111111122222 567788887654 58889987632
Q ss_pred CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--------------CeEEEEeCCCC
Q 046899 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--------------GILNIWDHEKI 321 (407)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--------------~~i~vwd~~~~ 321 (407)
+..+..+.........+.+ ++. |++.|+.+ ..+.+||+.+.
T Consensus 224 -W~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 224 -WAPFEAFPQERSSLSLVSL--VGT-LYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp -EEEECCCSSCCBSCEEEEE--TTE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred -EEECCCCCCcccceeEEEE--CCE-EEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 3333332221112222333 444 66677754 24678888764
No 332
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=80.25 E-value=28 Score=30.04 Aligned_cols=107 Identities=8% Similarity=0.120 Sum_probs=63.1
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC--CC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR--RK 271 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~--~~ 271 (407)
..+..|.+.+++ .+++++ .+|.|. -... +. .-..........+..+.+.| ++.+++.+...+..+-.|- .+
T Consensus 122 ~~~~~i~~~~~~-~~~~~~-~~g~v~--~S~DgG~-tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~t 195 (327)
T 2xbg_A 122 GSPRLIKALGNG-SAEMIT-NVGAIY--RTKDSGK-NWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTA 195 (327)
T ss_dssp SCEEEEEEEETT-EEEEEE-TTCCEE--EESSTTS-SEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSS
T ss_pred CCeEEEEEECCC-CEEEEe-CCccEE--EEcCCCC-CCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCc
Confidence 346677776666 556555 455442 2222 32 12223334456788999999 7787777654444444443 22
Q ss_pred CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd 317 (407)
.+.+. ......+..+++.+++. ++ ..+.+|.+.+.+
T Consensus 196 ------W~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 196 ------WEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD 231 (327)
T ss_dssp ------CEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred ------eeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence 34432 23456789999999987 54 455678887774
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=79.62 E-value=31 Score=30.21 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCe-EEEEeeCCCcEEEEeC
Q 046899 84 GEVNRIRELPQNSK-IVATHTDSPDVLIWDV 113 (407)
Q Consensus 84 ~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~ 113 (407)
.....|+|.| +++ ++++ ...|.|++++.
T Consensus 18 ~~P~~i~~~p-dG~~l~V~-e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLP-DNHGMLIT-LRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECS-TTCCEEEE-ETTTEEEEEET
T ss_pred CCcEEEEEcC-CCCEEEEE-eCCceEEEEeC
Confidence 4578999999 787 6655 45688888874
No 334
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=79.43 E-value=14 Score=34.89 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=52.6
Q ss_pred ceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCC---CCC----CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899 241 DIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTS---DGV----GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI 312 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~---~~~----~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~ 312 (407)
....+..+| ||++++.++ .+.++.++|.+.... +.. .....+.+. .......+|.++| ..+.|.--|.+
T Consensus 324 sPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCC-ceEeeeeecce
Confidence 345788999 888776655 577999999884210 000 111233332 3456889999999 46667778999
Q ss_pred EEEEeCCCC
Q 046899 313 LNIWDHEKI 321 (407)
Q Consensus 313 i~vwd~~~~ 321 (407)
|.-|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999999753
No 335
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=79.09 E-value=16 Score=31.02 Aligned_cols=104 Identities=11% Similarity=0.179 Sum_probs=56.1
Q ss_pred cEEEEEeC--CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCCce
Q 046899 208 QEFCSVGD--DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD----NSIHMFDRRKLTSDGVGSPI 281 (407)
Q Consensus 208 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d----g~i~vwd~~~~~~~~~~~~~ 281 (407)
.+++.|+. ...+.+||..+.+......+.........+.+ ++.+++.|+.+ ..+.+||+.+.. +..+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~----W~~~ 85 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDS----WYSK 85 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTE----EEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCe----EEEC
Confidence 56666765 35788999887652211111111111222222 56778888755 578889988732 3333
Q ss_pred eeecCCCCCEEEEEEcCCCCCEEEEeeCC------CeEEEEeCCCC
Q 046899 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAED------GILNIWDHEKI 321 (407)
Q Consensus 282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d------~~i~vwd~~~~ 321 (407)
..+......-..+.+ ++. |++.|+.+ ..+.+||+.+.
T Consensus 86 ~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 86 LGPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp ECCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTT
T ss_pred CCCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCC
Confidence 333221112222222 444 66778765 56888998864
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=78.19 E-value=12 Score=30.60 Aligned_cols=99 Identities=8% Similarity=0.001 Sum_probs=56.0
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCce---eeeccc--CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAV---KVEKAH--NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH 282 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~--~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~ 282 (407)
.+|.+..+| +++.=...+...... ....+. =..+..++|+| ++.+.++ .+|.+.-.+..+. ...
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~------~~~- 73 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTH------DND- 73 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCS------TTC-
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCC------Ccc-
Confidence 567777777 555443333321000 011122 23677999999 8887777 6777666665431 111
Q ss_pred eecCCCCC--------EEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899 283 KFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 283 ~~~~h~~~--------v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
.+.+-... -.++.|.|+|. |.++ .||.|.-++..+
T Consensus 74 ~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 74 NWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp CHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCC
T ss_pred cccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCc
Confidence 11111122 37889999998 5544 579998887543
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.95 E-value=10 Score=33.22 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=66.7
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCceeeeccc-CcceEEEEec--CCCCCEEEEE-eCCCcEEEEeCCCCCCCCCCCceee
Q 046899 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADIHCVDWN--PHDVNLILTG-SADNSIHMFDRRKLTSDGVGSPIHK 283 (407)
Q Consensus 208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~~--~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~ 283 (407)
.+++.++.||.|.-.|..+++ ....+... ..++....-. +.++..++.. +.||.+..+|..+ +.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~--~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~------G~~~~~ 82 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGH--IIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ------GLQKLP 82 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTE--EEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT------EEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCc--EEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC------CcEEee
Confidence 478889999999999999887 44444332 1222221110 1122334343 5899999999876 533332
Q ss_pred ecC----CCCCEEEE---EE------cCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 284 FEG----HSAAVLCV---QW------SPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 284 ~~~----h~~~v~~v---~~------~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
+.. ...++..- .. +.++. + .+|+.++.+...|+++++.+-.+..
T Consensus 83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~-V-y~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEK-V-YTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEHHHHHTTCSEEEECC----------CCEE-E-EECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccceeccccccCCCceeecccccccCCE-E-EEEecCCEEEEEECCCCcEEEEEec
Confidence 221 22333210 00 12332 4 5899999999999999988876653
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=72.41 E-value=14 Score=36.03 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCCcEEEEEeCC------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--cEEEEeCCCCCCCC
Q 046899 205 SSAQEFCSVGDD------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--SIHMFDRRKLTSDG 276 (407)
Q Consensus 205 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~ 276 (407)
++ .+++.||.+ ..+.+||..+.+......+...... .+++.-. ++.+++.|+.++ .+.+||..+..
T Consensus 451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~--- 524 (695)
T 2zwa_A 451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI--- 524 (695)
T ss_dssp TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECT-TSCEEEECCBCSSCSEEEEETTTTE---
T ss_pred CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc---
Confidence 45 677777653 3478899887652211111111111 2233323 678888888765 68999988732
Q ss_pred CCCceee---ecCCCCCEEEEEEcCCCCCEEEEeeC--C-----CeEEEEeCCCCC
Q 046899 277 VGSPIHK---FEGHSAAVLCVQWSPDKSSVFGSSAE--D-----GILNIWDHEKIG 322 (407)
Q Consensus 277 ~~~~~~~---~~~h~~~v~~v~~~~~~~~ll~s~~~--d-----~~i~vwd~~~~~ 322 (407)
+..+.. +........++.+..+...|++.|+. + +.+.+||+.+..
T Consensus 525 -W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 525 -FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp -EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred -eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 222221 11111222335555553447777876 2 468899988765
No 339
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=70.11 E-value=67 Score=29.47 Aligned_cols=114 Identities=4% Similarity=0.054 Sum_probs=60.0
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-CCceeeec---c------cCcceEEEEecCC---CCCEEEEEeC-
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS-TPAVKVEK---A------HNADIHCVDWNPH---DVNLILTGSA- 260 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~---~------~~~~v~~l~~~~~---~~~~l~tg~~- 260 (407)
..-..|+|.|++...|+.+...|.|++++..... ...+..+. . .......|+++|. ++.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567999999983134455678999999754221 10111111 1 1356788999992 2334333322
Q ss_pred -C----------CcEEEEeCCCCCCC----CCCCceeeec--CCCCCEEEEEEcCCCCCEEEEeeC
Q 046899 261 -D----------NSIHMFDRRKLTSD----GVGSPIHKFE--GHSAAVLCVQWSPDKSSVFGSSAE 309 (407)
Q Consensus 261 -d----------g~i~vwd~~~~~~~----~~~~~~~~~~--~h~~~v~~v~~~~~~~~ll~s~~~ 309 (407)
+ ..|.-|.+.....+ ...+.+..+. ........|+|.|||. |+++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 1 13444555431000 0022333332 2223468999999997 5556554
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=69.08 E-value=21 Score=31.15 Aligned_cols=51 Identities=10% Similarity=-0.003 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC------CCcEEEEeC
Q 046899 217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA------DNSIHMFDR 269 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~------dg~i~vwd~ 269 (407)
..+.+||+.+.+......+......-.+++.. ++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 47899999877632222221111111223332 4567777764 335777876
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=68.29 E-value=75 Score=31.12 Aligned_cols=110 Identities=10% Similarity=0.146 Sum_probs=64.5
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-ecc----cCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-EKA----HNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~----~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~ 269 (407)
..|.++...+++ .+.+ |+.+ -|..+|..+.. .... ... ....|.++..++ ++..|..|+. +-+..+|.
T Consensus 146 ~~i~~i~~d~~g-~lWi-gt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~ 218 (758)
T 3ott_A 146 NTIYSIIRTKDN-QIYV-GTYN-GLCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFP 218 (758)
T ss_dssp SCEEEEEECTTC-CEEE-EETT-EEEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEET
T ss_pred CeEEEEEEcCCC-CEEE-EeCC-CHhhCccCCCc--eEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcC
Confidence 468888888877 5444 4544 47778876554 1111 111 123488888877 5555555554 45778887
Q ss_pred CCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899 270 RKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~ 321 (407)
.+ .+ +..+. .....|.++...++|. |. .|+. +-+.+++..+.
T Consensus 219 ~~------~~-~~~~~~l~~~~i~~i~~d~~g~-lW-igT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 219 ST------GQ-IKQTEAFHNNSIKSLALDGNGD-LL-AGTD-NGLYVYHNDTT 261 (758)
T ss_dssp TT------TE-EEEEEEEEEEEEEEEEECTTCC-EE-EEET-TEEEEECCTTS
T ss_pred CC------Ce-EEeccCCCCCeEEEEEEcCCCC-EE-EEeC-CceeEEecCCC
Confidence 75 32 22221 1234688898888887 43 3444 45778887653
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=67.41 E-value=21 Score=30.50 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=52.8
Q ss_pred cEEEEEeCC-------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC------CCcEEEEeCCCCCC
Q 046899 208 QEFCSVGDD-------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA------DNSIHMFDRRKLTS 274 (407)
Q Consensus 208 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~------dg~i~vwd~~~~~~ 274 (407)
.+++.|+.+ ..+.+||+.+.+......+...... .+++. . ++.+++.|+. -..+.+||+.+..
T Consensus 111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 186 (318)
T 2woz_A 111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGD- 186 (318)
T ss_dssp EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence 677777653 3578889887652211111111011 12222 2 5677777764 2358899988732
Q ss_pred CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCCC
Q 046899 275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKIG 322 (407)
Q Consensus 275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~~ 322 (407)
+..+..+.........+.+ ++. |++.|+.+ ..+.+||+.+.+
T Consensus 187 ---W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 187 ---WKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ---EEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ---EEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCe
Confidence 2333222221111122222 444 66677643 357789988743
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.13 E-value=21 Score=36.32 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
.+.+++..++..+++ +-+.|+++|+|++.+++.+.+.
T Consensus 237 ~~~~~~~~~~~~~lf-tl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLV-MLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEE-EEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEE-EEECCCEEEEEECCCCCeEeee
Confidence 577788888888765 8899999999999998877654
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=65.13 E-value=64 Score=27.39 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=50.5
Q ss_pred cEEEEEeC----CC-------cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-------CcEEEEeC
Q 046899 208 QEFCSVGD----DS-------CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-------NSIHMFDR 269 (407)
Q Consensus 208 ~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-------g~i~vwd~ 269 (407)
.+++.|+. ++ .+..||..+.+......+.........+.+ ++.+++.|+.+ ..+.+||.
T Consensus 58 ~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 58 QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeC
Confidence 57777773 12 277888877652111111111111122222 45677777754 24788888
Q ss_pred CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC------CCeEEEEeCCCCC
Q 046899 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE------DGILNIWDHEKIG 322 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~------d~~i~vwd~~~~~ 322 (407)
.+.. +..+..+......-..+. .++. |++.|+. -..+.+||+.+.+
T Consensus 135 ~~~~----W~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 135 VAAK----WSEVKNLPIKVYGHNVIS--HNGM-IYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTTE----EEEECCCSSCEESCEEEE--ETTE-EEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCCC----EeECCCCCCcccccEEEE--ECCE-EEEEcCCCCCCCccceEEEEcCCCCE
Confidence 7622 222222221111111122 2444 6667764 2458899988743
No 345
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=64.31 E-value=76 Score=28.00 Aligned_cols=27 Identities=4% Similarity=0.028 Sum_probs=17.3
Q ss_pred ceEEEEecCCC-CCEEEEEeCCCcEEEE
Q 046899 241 DIHCVDWNPHD-VNLILTGSADNSIHMF 267 (407)
Q Consensus 241 ~v~~l~~~~~~-~~~l~tg~~dg~i~vw 267 (407)
.|.+++++|.+ ...+..++..+.|...
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 57789998743 4556666656655544
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=61.24 E-value=87 Score=27.62 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=16.5
Q ss_pred cceEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899 240 ADIHCVDWNPHDVNLILTGSADNSIHMF 267 (407)
Q Consensus 240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vw 267 (407)
..+.+|.++|.+...+..+..++.|...
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEE
Confidence 3578899988444555555544444443
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=60.16 E-value=33 Score=29.37 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=47.3
Q ss_pred CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe--CCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEE
Q 046899 217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS--ADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVL 292 (407)
Q Consensus 217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~--~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~ 292 (407)
..|+..++...+. . .+.. .. +..|++ +++.|+-.. .++ .|..-++.. .....+..+..
T Consensus 88 ~~Iy~i~~dg~~~--~-~l~~--~~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dG-------s~~~~lt~~~~--- 149 (302)
T 3s25_A 88 NSLCRIKRNGHGS--T-VLDP--DP--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDG-------EEKKKIKNHYL--- 149 (302)
T ss_dssp EEEEEEETTSCCC--E-EEEC--SC--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTS-------CCCEEEESSCC---
T ss_pred CeEEEEeCCCCcc--e-Eeec--CC--ccEEEE-eCCEEEEEeecCCCCceEEEEECCC-------CCeEEEeCCCc---
Confidence 4677777766552 2 2211 11 235667 666666554 333 455555543 33444443332
Q ss_pred EEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
.+++++++.|+-+.....+|.+-++....
T Consensus 150 -~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 150 -FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp -CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred -eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 45677888776565546778887776543
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.16 E-value=18 Score=36.81 Aligned_cols=37 Identities=5% Similarity=0.075 Sum_probs=29.9
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccc
Q 046899 85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAV 122 (407)
Q Consensus 85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~ 122 (407)
.+.++...+ +..+++|-+.|+++|+|++.++.++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 466777666 6779999999999999999998766543
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=57.61 E-value=85 Score=26.36 Aligned_cols=109 Identities=10% Similarity=0.160 Sum_probs=60.2
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD 275 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~ 275 (407)
.|..|+..... .++. . ||.|..|-.....+ .-....-...|..++... ...+.-. ||.|..|-.......
T Consensus 64 ~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gq--lg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gql 133 (282)
T 3qhy_B 64 GVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQ--TTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQT 133 (282)
T ss_dssp CCCEEEECSSE--EEEE-E-TTEEEEEECCTTST--TCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTT
T ss_pred CEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCC--CCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcC
Confidence 56677765543 3444 4 89998887654321 111111234677787754 3444445 999999987653211
Q ss_pred CCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 276 ~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
+.+. .....|..++...+. .++. . ||.|..|-.....++
T Consensus 134 --g~~~----~~~~~i~~i~~G~~~--~~~l-~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 134 --TVPA----EAQSGVTALDGGVYT--ALAV-K-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp --SCCG----GGGSSEEEEEECSSE--EEEE-E-TTEEEEEECCTTSTT
T ss_pred --CCCc----cCCCCeEEEEcccCE--EEEE-E-CCEEEEecCCCCCCC
Confidence 1111 123457777765443 2222 3 788999987764443
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=56.39 E-value=17 Score=31.86 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=42.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEc--CCCCCEEEEe-eCCCeEEEEeCCCCCcc
Q 046899 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWS--PDKSSVFGSS-AEDGILNIWDHEKIGEK 324 (407)
Q Consensus 252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~--~~~~~ll~s~-~~d~~i~vwd~~~~~~~ 324 (407)
+.+++.++.||.|.-+|..+ ++.+.+++.. ..++....-. +.+..+++.. +.||.|..+|..++...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~t------G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRN------GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEEETTSCEEEEETTT------TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CCEEEEEeCCCeEEEEECCC------CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 35788899999999999988 8888887653 1222221100 1122244343 57999999998876443
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=55.58 E-value=63 Score=31.46 Aligned_cols=115 Identities=8% Similarity=-0.004 Sum_probs=58.5
Q ss_pred CCCcEEEEEeCCC--cEEEEEcCCCCCCceee---ecccCcceEEEEecCCCCCEEEEEeC--C-----CcEEEEeCCCC
Q 046899 205 SSAQEFCSVGDDS--CLILWDARSGSTPAVKV---EKAHNADIHCVDWNPHDVNLILTGSA--D-----NSIHMFDRRKL 272 (407)
Q Consensus 205 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~l~tg~~--d-----g~i~vwd~~~~ 272 (407)
++ .+++.|+.++ .+.+||..+........ .........++.+...++.+++.|+. + ..+.+||+.+.
T Consensus 500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 500 DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 45 6777777654 69999998766321111 11111122335556523677888876 2 35889998872
Q ss_pred CC--CCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeC--------CCeEEEEeCCCCC
Q 046899 273 TS--DGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAE--------DGILNIWDHEKIG 322 (407)
Q Consensus 273 ~~--~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~--------d~~i~vwd~~~~~ 322 (407)
.- ...+..+.... ........+.+ .++. |++.||. ...|.+||+.+.+
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIKYI-TPRK-LLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEEEE-ETTE-EEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred ccccceEEEEcCCCCCCCcccceEEEe-CCCE-EEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 20 00001111111 11111122222 2244 6667774 3468899988754
No 352
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=55.44 E-value=27 Score=30.35 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=29.5
Q ss_pred cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC------eEEEEeCCCCCcccc
Q 046899 263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG------ILNIWDHEKIGEKQD 326 (407)
Q Consensus 263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~------~i~vwd~~~~~~~~~ 326 (407)
.+.+||+.+.. +..+..+......-.++.+ +++ |++.|+.++ .|.+++++..+....
T Consensus 286 ~~~~yd~~~~~----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGK----WDKSGELSQGRAYGVSLPW--NNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC-------CEEEEECSSCCBSSEEEEE--TTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCc----eeeCCCCCCCcccceeEEe--CCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 57789988643 5555555432222223332 444 666787543 455668887665543
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=54.52 E-value=96 Score=26.03 Aligned_cols=110 Identities=13% Similarity=0.196 Sum_probs=62.8
Q ss_pred cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS 274 (407)
Q Consensus 195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~ 274 (407)
..|..|+.-... .++ -. ||.|..|=.....+ .-........|..++... ...+.-. ||.|..|-......
T Consensus 102 ~~v~~ia~G~~h--s~a-l~-~G~v~~wG~n~~gq--lg~~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 102 SGVDAIAAGAWA--SYA-LK-DGKVIAWGDDSDGQ--TTVPAEAQSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp SSEEEEEEETTE--EEE-EE-TTEEEEEECCTTST--TSCCGGGGSSEEEEEECS---SEEEEEE-TTEEEEEECCTTST
T ss_pred CCeEEEECcCCE--EEE-Ee-CCeEEEecCCCCCc--CCCCccCCCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCC
Confidence 467777765543 233 34 89999997654321 111112335677777654 2333334 79999998765322
Q ss_pred CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899 275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324 (407)
Q Consensus 275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 324 (407)
.+ .+. .-...|..|+...+. .++. .||.|..|-.....++
T Consensus 172 lg--~p~----~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 172 TT--VPA----EAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp TS--CCG----GGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTT
T ss_pred CC--Cce----ecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCC
Confidence 11 111 113468888775443 3334 5999999987765544
No 354
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=52.90 E-value=1.7e+02 Score=28.50 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=63.2
Q ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc----cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA----HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~ 271 (407)
.|.+|...++| ++.+.++..+-|..+|..+.+ ...+.. ....+.++..+. ++++.+ |+..| +..||..+
T Consensus 473 ~i~~i~~d~~g-~lWi~~~t~~Gl~~~d~~~~~---~~~~~~~~~~~~~~~~~i~~d~-~g~lWi-gt~~G-l~~~~~~~ 545 (758)
T 3ott_A 473 FINQIIPDNEG-NVWVLLYNNKGIDKINPRTRE---VTKLFADELTGEKSPNYLLCDE-DGLLWV-GFHGG-VMRINPKD 545 (758)
T ss_dssp CEEEEEECTTS-CEEEEETTCSSEEEEETTTTE---EEEECTTTSCGGGCEEEEEECT-TSCEEE-EETTE-EEEECC--
T ss_pred eeeeEEEcCCC-CEEEEccCCCCcEEEeCCCCc---eEEecCCCcCCCcccceEEECC-CCCEEE-EecCc-eEEEecCC
Confidence 58899988888 555533444568888987655 222211 124577888877 666554 44555 77888765
Q ss_pred CCCCCCCCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 272 LTSDGVGSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 272 ~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
.. .+.. ...+ ....|.++... +|. |. .++..| |..+|..+.+
T Consensus 546 ~~----~~~~-~~~gl~~~~i~~i~~~-~g~-lW-i~t~~G-l~~~~~~~~~ 588 (758)
T 3ott_A 546 ES----QQSI-SFGSFSNNEILSMTCV-KNS-IW-VSTTNG-LWIIDRKTMD 588 (758)
T ss_dssp CC----CCBC-CCCC---CCEEEEEEE-TTE-EE-EEESSC-EEEEETTTCC
T ss_pred Cc----eEEe-cccCCCccceEEEEEC-CCC-EE-EECCCC-eEEEcCCCce
Confidence 21 1111 1111 23568888764 665 54 344455 7788887643
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=50.40 E-value=1.2e+02 Score=25.83 Aligned_cols=103 Identities=10% Similarity=0.016 Sum_probs=52.9
Q ss_pred EECCCCCcEEEEE---eCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE-EEeCCCcEEEEeCCCCCCCC
Q 046899 201 QFCPSSAQEFCSV---GDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLTSDG 276 (407)
Q Consensus 201 ~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~ 276 (407)
.|++++..+..+- ..+..|..-++.... ...+..+.. ..+++ +++.|+ +......|.+.++..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g----- 176 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTAS----- 176 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTT-----
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCC-----
Confidence 5666773444343 234455555665333 223333322 34566 555555 443356788888765
Q ss_pred CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCCC
Q 046899 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEKI 321 (407)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~~ 321 (407)
... ..+.. +... ..++|++.+|+-+...+ ..|..-++...
T Consensus 177 -~~~-~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 177 -QSE-ALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp -TEE-EEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred -CCE-EEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 332 23321 2222 34669999886554433 35666666653
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=49.86 E-value=1.4e+02 Score=26.51 Aligned_cols=141 Identities=11% Similarity=0.128 Sum_probs=76.6
Q ss_pred CCCCCCCCCc--CceeeEee------cccCEEEEEEC---CC----CCcEEEEEeCCCcEEEEEcCCCCCCceeee----
Q 046899 175 GDKPLESPSI--GARGKYLG------HEDTVEDVQFC---PS----SAQEFCSVGDDSCLILWDARSGSTPAVKVE---- 235 (407)
Q Consensus 175 ~i~i~d~~~~--~~~~~~~~------~~~~v~~l~~~---~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---- 235 (407)
.+.+||+.+. +.++.+.- ....+..+.+. |. +....++=+..+.|.++|+.+++. .+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s--wRv~~~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS--WNVTHPTF 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE--EEEECGGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE--EEEccCCC
Confidence 3445666666 66666542 23467788877 22 213344445578899999998751 1111
Q ss_pred ----------ccc----CcceEEEEecCCC----CCEEEEEeCCCcEEEEeCCC--CCCCCCCCceeeec--CCCCCEEE
Q 046899 236 ----------KAH----NADIHCVDWNPHD----VNLILTGSADNSIHMFDRRK--LTSDGVGSPIHKFE--GHSAAVLC 293 (407)
Q Consensus 236 ----------~~~----~~~v~~l~~~~~~----~~~l~tg~~dg~i~vwd~~~--~~~~~~~~~~~~~~--~h~~~v~~ 293 (407)
.+. ...+..|+.+| + ++.|.-....+. ++|.+.+ .........+..+- +-...-..
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp-~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGD-RDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECC-CCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred ccccCcceEECCEEeEeccCceEEEecC-CcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence 010 23677888888 5 566665554442 3333321 10000012222221 11133445
Q ss_pred EEEc-CCCCCEEEEeeCCCeEEEEeCCC
Q 046899 294 VQWS-PDKSSVFGSSAEDGILNIWDHEK 320 (407)
Q Consensus 294 v~~~-~~~~~ll~s~~~d~~i~vwd~~~ 320 (407)
++.. .+|. |+.+--..+.|..|+..+
T Consensus 280 ~~~D~~~G~-ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKV-IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence 6775 5565 666777889999999875
No 357
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=43.43 E-value=2.5e+02 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899 83 PGEVNRIRELPQNSKIVATHTDSPDVLIW 111 (407)
Q Consensus 83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vw 111 (407)
.+.|.+|+++|.+...+..++..+.|...
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS 42 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRW 42 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEe
Confidence 46899999999777777777766655433
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=40.75 E-value=89 Score=29.70 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=38.0
Q ss_pred eEEEEecCCCCCEEEEEeCC------------CcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCCEEEE
Q 046899 242 IHCVDWNPHDVNLILTGSAD------------NSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSSVFGS 306 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ll~s 306 (407)
.--|.|+| .+++++.-..+ ..+.+.+..+ ++..+-+.+. ...++.++|+||++.||+.
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~------g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT------GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT------CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCC------CeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35688999 77766553322 1345555555 5555445443 4689999999999988854
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.58 E-value=14 Score=38.55 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899 290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327 (407)
Q Consensus 290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 327 (407)
.+.+++..++..+++ +-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lf-tL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLV-MLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEE-EEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEE-EEeCCCEEEEEECCCCCeEEee
Confidence 345556667777665 8899999999999998777653
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.52 E-value=30 Score=33.64 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899 289 AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329 (407)
Q Consensus 289 ~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 329 (407)
..|.++.+. ..++ .+-+.|.++|+|++++++.+.+..-
T Consensus 222 ~~Is~~~~~--~~fL-ftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYL-IVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEE-EEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEE-EEEEcCCeEEEEEcCCCceEEeecc
Confidence 356666653 5556 4899999999999999887765543
No 361
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.10 E-value=1.5e+02 Score=28.02 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=41.3
Q ss_pred ceEEEEecCCCCCEEEEEeC------------CCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCCEEEEe
Q 046899 241 DIHCVDWNPHDVNLILTGSA------------DNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSSVFGSS 307 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ll~s~ 307 (407)
....|.|++ ++.+.+.-.. ...+..++..+ ++....+... ...++.++|+||++.|+++.
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t------Gel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT------GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT------CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCC------CeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 456799999 7776663221 11566666655 5554444432 35789999999999998765
Q ss_pred eCCC
Q 046899 308 AEDG 311 (407)
Q Consensus 308 ~~d~ 311 (407)
-.-|
T Consensus 550 QHPG 553 (592)
T 4a9v_A 550 QHPG 553 (592)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 4433
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.56 E-value=75 Score=33.11 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=28.1
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF 284 (407)
Q Consensus 242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~ 284 (407)
+.+++..+ +..++++-+.|+++|+|++.+ ++++.+.
T Consensus 240 ~vs~~~~~-~~~~lftL~~D~~LRiWsl~t------~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLS-TYNVLVMLSLDYKLKVLDLST------NQCVETI 275 (1139)
T ss_dssp BSCCEEET-TTTEEEEEBTTCEEEEEETTT------TEEEEEE
T ss_pred eEEeeccC-CccEEEEEeCCCEEEEEECCC------CCeEEee
Confidence 34455556 778999999999999999998 6666654
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=34.09 E-value=1.4e+02 Score=28.37 Aligned_cols=58 Identities=12% Similarity=0.295 Sum_probs=36.0
Q ss_pred EEEEEECCCCCcEEEEEeCC------------CcEEEEEcCCCCCCceeeecc-cCcceEEEEecCCCCCEEEEE
Q 046899 197 VEDVQFCPSSAQEFCSVGDD------------SCLILWDARSGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 197 v~~l~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg 258 (407)
.-.|+|+|.| ++++.--.+ ..+.+.+..+++ ....+.. ..++++.++|+| +++.|++.
T Consensus 478 PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~--~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGE--IRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp EEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC--EEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCe--EEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 3568999998 655543221 235555655565 3333333 357899999999 77766553
No 364
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=32.62 E-value=2.3e+02 Score=27.99 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=39.3
Q ss_pred ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc-------cCcceEEEEecCCCCCEEEEEe
Q 046899 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA-------HNADIHCVDWNPHDVNLILTGS 259 (407)
Q Consensus 194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~~l~tg~ 259 (407)
...|.+|+++|..+..++.++..+.|...+= .++ .-..+.. ....+.+|+++|.+.+.++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~--tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTS--KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTT--EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCC--CeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 4589999999987677888887777655542 222 1111111 1246899999985555555544
No 365
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.11 E-value=2.6e+02 Score=26.49 Aligned_cols=59 Identities=10% Similarity=0.284 Sum_probs=37.6
Q ss_pred CEEEEEECCCCCcEEEEEeC------------CCcEEEEEcCCCCCCceeeecc-cCcceEEEEecCCCCCEEEEE
Q 046899 196 TVEDVQFCPSSAQEFCSVGD------------DSCLILWDARSGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTG 258 (407)
Q Consensus 196 ~v~~l~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg 258 (407)
....|.|.++| .+.++.-. .+.|..++..+++ ....+.. ....++.++|+| |++.|+++
T Consensus 477 sPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe--l~~fl~~P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGE--IRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC--EEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCe--EEEEEeCCCCccccCCEECC-CCCEEEEE
Confidence 45789999998 55553211 1256666666666 3333332 246789999999 77777665
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=29.14 E-value=74 Score=31.02 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=27.1
Q ss_pred ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec
Q 046899 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE 285 (407)
Q Consensus 241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 285 (407)
.|.++.+ +..++++-+.|.++|+||+++ ++++.+..
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t------~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTS------FTLIQDYD 258 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTT------TEEEEEEE
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCC------CceEEeec
Confidence 3555444 467999999999999999998 66665543
No 367
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=25.00 E-value=3e+02 Score=25.06 Aligned_cols=65 Identities=9% Similarity=0.152 Sum_probs=38.5
Q ss_pred cceEEEEecCCCCC-EEEEEeCCCcEEEEeCCCCCCCCCCCceeeec---------CCCCCEEEEEEcCC---CCCEEEE
Q 046899 240 ADIHCVDWNPHDVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFE---------GHSAAVLCVQWSPD---KSSVFGS 306 (407)
Q Consensus 240 ~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~h~~~v~~v~~~~~---~~~ll~s 306 (407)
...+.|+|.| ++. .|+++...|.|++++...... ..++..+. ........|+|+|+ ..+|+++
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 3457899999 764 344456789999997542100 12222222 11457899999996 3345555
Q ss_pred ee
Q 046899 307 SA 308 (407)
Q Consensus 307 ~~ 308 (407)
-+
T Consensus 90 yt 91 (463)
T 2wg3_C 90 YT 91 (463)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 368
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=21.46 E-value=79 Score=24.63 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=28.0
Q ss_pred CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899 287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG 322 (407)
Q Consensus 287 h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 322 (407)
+...+.++.|...+.+-+++...++++.++|.+-++
T Consensus 117 g~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GE 152 (188)
T 1ukf_A 117 GRKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGE 152 (188)
T ss_dssp TCEEEEEEEETTTEEEEEEEEEETTEEEEEETTTEE
T ss_pred CCceEEEEEecCCCceeEEeccCCCeEEEeCCCCce
Confidence 345677788887776777888889999999988653
Done!