Query 046901
Match_columns 172
No_of_seqs 241 out of 1265
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3.6E-26 1.2E-30 157.3 5.7 60 12-72 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 90.6 0.22 7.6E-06 35.1 3.4 27 8-36 3-30 (77)
3 1u3e_M HNH homing endonuclease 83.4 0.2 6.8E-06 38.8 -0.3 38 13-53 109-146 (174)
4 1z1b_A Integrase; protein-DNA 83.0 1.3 4.6E-05 35.8 4.5 41 14-58 14-54 (356)
5 3jtz_A Integrase; four strande 80.7 3.9 0.00013 28.6 5.7 44 16-59 28-75 (88)
6 3ju0_A Phage integrase; four s 68.8 9.6 0.00033 27.6 5.3 44 16-59 28-75 (108)
7 2ftc_I Mitochondrial ribosomal 41.7 45 0.0015 24.5 5.1 37 24-62 80-116 (118)
8 1x60_A Sporulation-specific N- 39.1 26 0.0009 22.8 3.1 33 25-57 36-68 (79)
9 1b69_A Protein (integrase); in 38.5 37 0.0013 23.1 3.8 24 8-31 7-30 (69)
10 1uta_A FTSN, MSGA, cell divisi 38.1 33 0.0011 22.6 3.6 33 25-57 36-68 (81)
11 2bn8_A CEDA, cell division act 32.4 18 0.00063 25.3 1.5 40 10-52 37-76 (87)
12 3r8s_M 50S ribosomal protein L 25.5 97 0.0033 23.4 4.6 36 24-62 92-127 (136)
13 1kcq_A Gelsolin, brevin, ADF, 22.7 1.3E+02 0.0043 20.8 4.6 37 22-58 27-63 (104)
14 1svq_A Severin; actin-binding; 20.6 1.2E+02 0.004 21.5 4.1 34 25-58 40-73 (114)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=3.6e-26 Score=157.30 Aligned_cols=60 Identities=55% Similarity=0.978 Sum_probs=56.9
Q ss_pred ceeEEEECCCCcEEEEEeeCCC-CeEEeccCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 046901 12 AFRGVRMRKWGKWVSEIRQPGT-KTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPEL 72 (172)
Q Consensus 12 ~yrGVr~r~~gKW~AeIr~p~~-~kri~LGtf~t~EeAA~AyD~Aa~~l~G~~~a~lNFp~s 72 (172)
+||||++|++|||+|+|+.|.+ ++++|||||+|+||||+|||.|+++++|. .+++|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~-~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGS-RALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSS-CCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCc-ccccCCCCc
Confidence 6999998889999999999975 79999999999999999999999999999 899999985
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.58 E-value=0.22 Score=35.10 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=20.8
Q ss_pred CCCCceeEEE-ECCCCcEEEEEeeCCCCeE
Q 046901 8 TKQSAFRGVR-MRKWGKWVSEIRQPGTKTR 36 (172)
Q Consensus 8 ~ntS~yrGVr-~r~~gKW~AeIr~p~~~kr 36 (172)
..+|+|.||. ..+.+.|+|.-.+ ++++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence 4689999995 4456999999999 5544
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=83.44 E-value=0.2 Score=38.82 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=29.0
Q ss_pred eeEEEECCCCcEEEEEeeCCCCeEEeccCCCCHHHHHHHHH
Q 046901 13 FRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYD 53 (172)
Q Consensus 13 yrGVr~r~~gKW~AeIr~p~~~kri~LGtf~t~EeAA~AyD 53 (172)
++||...+.++|.+.|.. . +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 456633333678899988 5 6778999999999999974
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=82.97 E-value=1.3 Score=35.83 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=30.4
Q ss_pred eEEEECCCCcEEEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 046901 14 RGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALH 58 (172)
Q Consensus 14 rGVr~r~~gKW~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~ 58 (172)
.||++++.|.|..+... +|+++.+|. |..||..+...+...
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~ 54 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIE 54 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHH
Confidence 46877777899876654 788899996 888887776654443
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=80.70 E-value=3.9 Score=28.58 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=32.5
Q ss_pred EEECCCC--cEEEEEeeCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 046901 16 VRMRKWG--KWVSEIRQPGTKTRIWLGSYE--TPEMAAAAYDVAALHF 59 (172)
Q Consensus 16 Vr~r~~g--KW~AeIr~p~~~kri~LGtf~--t~EeAA~AyD~Aa~~l 59 (172)
++-+++| .|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3445544 499998886666789999997 7888888777766555
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=68.78 E-value=9.6 Score=27.60 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=31.3
Q ss_pred EEECCCC--cEEEEEeeCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 046901 16 VRMRKWG--KWVSEIRQPGTKTRIWLGSYE--TPEMAAAAYDVAALHF 59 (172)
Q Consensus 16 Vr~r~~g--KW~AeIr~p~~~kri~LGtf~--t~EeAA~AyD~Aa~~l 59 (172)
++-.++| .|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3445544 499998885566779999997 6788887776655544
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=41.72 E-value=45 Score=24.53 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=30.9
Q ss_pred EEEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHHhCCC
Q 046901 24 WVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGR 62 (172)
Q Consensus 24 W~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~G~ 62 (172)
|+|.|.. ...-+-++...+++.|..|...|+.+|-++
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~~ 116 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPFA 116 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCCC
Confidence 9999997 666666777789999999999999888654
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=39.08 E-value=26 Score=22.80 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=22.9
Q ss_pred EEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHH
Q 046901 25 VSEIRQPGTKTRIWLGSYETPEMAAAAYDVAAL 57 (172)
Q Consensus 25 ~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~ 57 (172)
.+.|.....--|+++|.|.+.++|..+.+....
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344433223368999999999999988776544
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=38.45 E-value=37 Score=23.08 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=19.6
Q ss_pred CCCCceeEEEECCCCcEEEEEeeC
Q 046901 8 TKQSAFRGVRMRKWGKWVSEIRQP 31 (172)
Q Consensus 8 ~ntS~yrGVr~r~~gKW~AeIr~p 31 (172)
.+..-+.|+.+|+.|+|+..+...
T Consensus 7 kgr~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 7 RGRILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp SSSCCCTTEEECSSSCEEEEEECT
T ss_pred CCCccCCCeEEccCCcEEEEEEcC
Confidence 345668899999999999999885
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=38.13 E-value=33 Score=22.62 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=23.7
Q ss_pred EEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHH
Q 046901 25 VSEIRQPGTKTRIWLGSYETPEMAAAAYDVAAL 57 (172)
Q Consensus 25 ~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~ 57 (172)
.+.|.....--|+.+|.|.+.++|..+.+....
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 445554333468999999999999988776554
No 11
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=32.39 E-value=18 Score=25.34 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCceeEEEECCCCcEEEEEeeCCCCeEEeccCCCCHHHHHHHH
Q 046901 10 QSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAY 52 (172)
Q Consensus 10 tS~yrGVr~r~~gKW~AeIr~p~~~kri~LGtf~t~EeAA~Ay 52 (172)
--+||-||.-+ |||+|.+-. ...-.---.|..+|.|-+--
T Consensus 37 md~frdvw~lr-gkyvafvl~--ge~frrspafsvpesaqrwa 76 (87)
T 2bn8_A 37 MDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFTVPESAQRWA 76 (87)
T ss_dssp TTTCTTEEEET-TEEEEBCCS--SSCCCBCCCBSSHHHHHHHH
T ss_pred cccchhheeec-cceEEEEEe--chhhccCCccCCcHHHHHHH
Confidence 45789998655 899999876 22222234577777766543
No 12
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=25.55 E-value=97 Score=23.36 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=29.7
Q ss_pred EEEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHHhCCC
Q 046901 24 WVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGR 62 (172)
Q Consensus 24 W~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~G~ 62 (172)
|+|.|.. ...-+-++. .+++.|..|...|+.+|-++
T Consensus 92 wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP~~ 127 (136)
T 3r8s_M 92 WVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLPIK 127 (136)
T ss_dssp EEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCSSC
T ss_pred EEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCCC
Confidence 9999997 666666777 59999999999999887654
No 13
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=22.69 E-value=1.3e+02 Score=20.77 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=29.1
Q ss_pred CcEEEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 046901 22 GKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALH 58 (172)
Q Consensus 22 gKW~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~ 58 (172)
+.--+.|-.-...-.+|.|...+..|...|-..|...
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3345777775566789999999999999999887644
No 14
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=20.63 E-value=1.2e+02 Score=21.49 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=26.8
Q ss_pred EEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 046901 25 VSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALH 58 (172)
Q Consensus 25 ~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~ 58 (172)
-+.|-.....-.+|.|...+..|-+.|-..|...
T Consensus 40 D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 40 DCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp SEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3566665556789999999999999998877653
Done!