Query 046902
Match_columns 393
No_of_seqs 231 out of 1776
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 7.4E-36 1.6E-40 263.6 26.2 224 96-336 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 3.9E-16 8.5E-21 129.8 18.1 150 207-359 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 1.1E-15 2.5E-20 121.7 13.2 112 207-321 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.6 7.1E-13 1.5E-17 121.4 22.8 322 2-361 4-373 (373)
5 PHA02713 hypothetical protein; 99.4 2.2E-11 4.8E-16 120.6 22.2 210 96-342 299-541 (557)
6 KOG4441 Proteins containing BT 99.4 4.5E-11 9.8E-16 118.1 20.4 210 94-341 326-553 (571)
7 PHA02713 hypothetical protein; 99.3 3.7E-10 8E-15 112.0 21.4 235 111-388 273-538 (557)
8 KOG4441 Proteins containing BT 99.3 7.1E-10 1.5E-14 109.6 20.6 197 110-342 301-507 (571)
9 PHA03098 kelch-like protein; P 99.2 1.8E-09 4E-14 107.4 22.8 192 111-341 312-518 (534)
10 PHA02790 Kelch-like protein; P 99.2 2.5E-09 5.5E-14 104.4 22.4 184 110-341 287-477 (480)
11 PLN02153 epithiospecifier prot 99.2 1.9E-08 4.2E-13 94.1 24.4 210 110-342 50-292 (341)
12 TIGR03547 muta_rot_YjhT mutatr 99.1 6.6E-08 1.4E-12 90.8 23.6 217 98-341 15-305 (346)
13 PLN02193 nitrile-specifier pro 99.0 5.8E-08 1.3E-12 94.6 23.0 206 111-343 194-419 (470)
14 PRK14131 N-acetylneuraminic ac 99.0 1.6E-07 3.5E-12 89.0 23.2 258 96-383 34-368 (376)
15 TIGR03548 mutarot_permut cycli 99.0 1.6E-07 3.5E-12 87.3 22.0 155 111-295 40-204 (323)
16 PHA03098 kelch-like protein; P 98.9 3.8E-08 8.3E-13 98.0 17.5 235 111-388 265-516 (534)
17 PF12937 F-box-like: F-box-lik 98.9 1.6E-10 3.5E-15 74.3 0.0 42 2-43 1-42 (47)
18 PLN02153 epithiospecifier prot 98.9 5.6E-07 1.2E-11 84.3 22.4 178 96-295 81-294 (341)
19 PHA02790 Kelch-like protein; P 98.8 2.2E-07 4.8E-12 90.9 17.8 184 167-387 286-474 (480)
20 PF00646 F-box: F-box domain; 98.7 1.2E-09 2.5E-14 70.7 -0.7 44 2-45 3-46 (48)
21 PLN02193 nitrile-specifier pro 98.7 6E-06 1.3E-10 80.6 24.1 176 96-296 224-421 (470)
22 smart00256 FBOX A Receptor for 98.6 5E-09 1.1E-13 65.2 -0.1 39 5-43 1-39 (41)
23 PRK14131 N-acetylneuraminic ac 98.6 2.5E-05 5.3E-10 74.2 24.2 155 168-340 189-374 (376)
24 TIGR03548 mutarot_permut cycli 98.5 4E-05 8.6E-10 71.3 20.8 140 110-271 88-233 (323)
25 TIGR03547 muta_rot_YjhT mutatr 98.3 9.9E-05 2.2E-09 69.3 20.6 142 110-271 168-331 (346)
26 KOG4693 Uncharacterized conser 98.3 0.0001 2.2E-09 63.6 16.4 222 97-348 31-288 (392)
27 KOG1230 Protein containing rep 98.1 0.0003 6.4E-09 64.4 16.2 210 110-343 98-349 (521)
28 KOG0281 Beta-TrCP (transducin 97.9 0.00027 5.8E-09 63.1 13.2 44 2-45 75-122 (499)
29 KOG0379 Kelch repeat-containin 97.5 0.021 4.6E-07 56.0 20.9 207 111-343 89-310 (482)
30 KOG0379 Kelch repeat-containin 97.4 0.0089 1.9E-07 58.6 17.1 180 97-296 120-312 (482)
31 KOG4693 Uncharacterized conser 97.4 0.0013 2.9E-08 56.8 9.6 158 111-293 106-284 (392)
32 KOG2120 SCF ubiquitin ligase, 97.3 5E-05 1.1E-09 66.9 -0.6 39 2-40 98-136 (419)
33 KOG1230 Protein containing rep 96.9 0.048 1E-06 50.5 14.9 149 169-335 99-276 (521)
34 KOG0274 Cdc4 and related F-box 96.5 0.57 1.2E-05 46.5 20.5 236 2-281 108-359 (537)
35 KOG2997 F-box protein FBX9 [Ge 96.3 0.001 2.2E-08 59.1 0.2 47 2-48 107-158 (366)
36 PF08450 SGL: SMP-30/Gluconola 96.2 0.85 1.9E-05 40.3 21.1 202 98-344 9-223 (246)
37 PF02191 OLF: Olfactomedin-lik 95.7 0.69 1.5E-05 41.0 15.2 128 203-344 70-213 (250)
38 PF13964 Kelch_6: Kelch motif 95.5 0.046 9.9E-07 35.0 5.4 40 204-243 4-47 (50)
39 smart00284 OLF Olfactomedin-li 95.5 0.48 1E-05 41.9 13.1 128 203-344 75-218 (255)
40 PF07893 DUF1668: Protein of u 94.7 2.1 4.5E-05 40.1 15.9 156 93-270 69-252 (342)
41 PF01344 Kelch_1: Kelch motif; 94.2 0.1 2.2E-06 32.7 4.3 35 153-187 13-47 (47)
42 PF07250 Glyoxal_oxid_N: Glyox 94.0 1.8 3.8E-05 38.2 12.8 175 167-365 45-226 (243)
43 smart00612 Kelch Kelch domain. 94.0 0.11 2.3E-06 32.4 4.0 21 167-187 14-34 (47)
44 PF01344 Kelch_1: Kelch motif; 93.8 0.15 3.2E-06 32.0 4.4 38 204-241 4-44 (47)
45 PF13360 PQQ_2: PQQ-like domai 93.8 4.1 9E-05 35.4 20.3 194 99-340 35-236 (238)
46 PF13964 Kelch_6: Kelch motif 93.5 0.11 2.5E-06 33.1 3.5 35 153-187 13-47 (50)
47 PF07893 DUF1668: Protein of u 92.8 5.5 0.00012 37.3 14.9 110 225-341 86-214 (342)
48 PF07646 Kelch_2: Kelch motif; 92.7 0.44 9.6E-06 30.2 5.4 39 204-242 4-47 (49)
49 PF07762 DUF1618: Protein of u 92.4 1.3 2.7E-05 35.0 8.8 76 225-300 6-101 (131)
50 COG2706 3-carboxymuconate cycl 91.7 11 0.00023 34.8 14.7 146 224-379 166-320 (346)
51 PRK11138 outer membrane biogen 91.6 13 0.00028 35.5 19.8 192 98-338 118-316 (394)
52 KOG2055 WD40 repeat protein [G 91.5 13 0.00029 35.4 18.2 118 208-344 265-384 (514)
53 KOG4152 Host cell transcriptio 90.1 9.4 0.0002 36.9 13.1 90 110-219 57-154 (830)
54 PF13418 Kelch_4: Galactose ox 89.7 0.45 9.8E-06 30.1 3.1 35 153-187 14-48 (49)
55 KOG0647 mRNA export protein (c 89.5 3.4 7.4E-05 37.0 9.2 77 261-349 39-115 (347)
56 COG4257 Vgb Streptogramin lyas 88.8 8 0.00017 34.5 10.9 124 94-246 193-318 (353)
57 COG3055 Uncharacterized protei 88.6 20 0.00044 33.2 17.0 116 166-297 194-338 (381)
58 PF10282 Lactonase: Lactonase, 88.6 21 0.00046 33.4 21.9 175 138-342 144-332 (345)
59 KOG0310 Conserved WD40 repeat- 88.5 24 0.00052 33.8 15.8 185 116-349 8-198 (487)
60 COG3055 Uncharacterized protei 87.9 5.2 0.00011 36.8 9.5 115 168-298 113-268 (381)
61 PF10282 Lactonase: Lactonase, 87.8 24 0.00051 33.0 16.9 123 211-342 154-285 (345)
62 TIGR03300 assembly_YfgL outer 87.8 25 0.00054 33.2 19.5 98 99-236 64-166 (377)
63 TIGR01640 F_box_assoc_1 F-box 87.7 13 0.00027 32.4 12.0 140 209-363 3-159 (230)
64 PF13360 PQQ_2: PQQ-like domai 87.6 18 0.00039 31.3 17.3 112 207-340 32-146 (238)
65 PRK11138 outer membrane biogen 87.5 27 0.00058 33.3 19.7 108 205-340 250-359 (394)
66 PF07646 Kelch_2: Kelch motif; 87.5 0.98 2.1E-05 28.6 3.6 34 153-186 13-48 (49)
67 PF13418 Kelch_4: Galactose ox 87.4 1.2 2.6E-05 28.1 4.0 36 205-240 5-44 (49)
68 PRK04792 tolB translocation pr 86.9 32 0.0007 33.5 19.9 186 110-341 242-432 (448)
69 PRK11028 6-phosphogluconolacto 86.5 27 0.00058 32.2 14.9 138 168-335 12-157 (330)
70 PRK05137 tolB translocation pr 86.3 34 0.00073 33.2 21.2 188 109-341 225-419 (435)
71 KOG0294 WD40 repeat-containing 85.7 27 0.00058 31.8 12.5 109 206-337 47-160 (362)
72 COG2706 3-carboxymuconate cycl 85.4 30 0.00066 31.9 18.9 157 167-343 166-332 (346)
73 KOG1310 WD40 repeat protein [G 85.4 18 0.0004 35.3 12.1 118 98-234 59-179 (758)
74 PLN02772 guanylate kinase 84.5 6.9 0.00015 37.1 8.9 74 204-282 27-107 (398)
75 KOG4341 F-box protein containi 83.4 0.31 6.7E-06 45.6 -0.4 38 3-40 73-110 (483)
76 PRK00178 tolB translocation pr 82.6 48 0.001 31.9 20.0 187 110-341 223-413 (430)
77 TIGR03300 assembly_YfgL outer 82.5 44 0.00095 31.5 20.4 193 98-339 103-302 (377)
78 PF13415 Kelch_3: Galactose ox 81.9 2.9 6.3E-05 26.4 3.9 22 166-187 17-38 (49)
79 PF06433 Me-amine-dh_H: Methyl 81.6 45 0.00098 31.0 13.3 115 211-340 195-326 (342)
80 TIGR02800 propeller_TolB tol-p 81.2 52 0.0011 31.4 20.2 188 110-341 170-361 (417)
81 KOG0316 Conserved WD40 repeat- 81.1 37 0.0008 29.7 15.1 186 99-338 27-217 (307)
82 TIGR03866 PQQ_ABC_repeats PQQ- 80.8 40 0.00088 29.9 23.1 119 210-343 166-289 (300)
83 smart00612 Kelch Kelch domain. 80.3 4.7 0.0001 24.6 4.5 20 110-129 15-34 (47)
84 PF05096 Glu_cyclase_2: Glutam 80.1 43 0.00094 29.9 15.3 118 210-349 54-173 (264)
85 PLN00181 protein SPA1-RELATED; 79.9 86 0.0019 33.1 24.0 191 102-337 547-741 (793)
86 TIGR03866 PQQ_ABC_repeats PQQ- 76.9 53 0.0012 29.1 23.2 188 108-340 51-243 (300)
87 COG4946 Uncharacterized protei 75.8 80 0.0017 30.6 15.6 154 167-343 286-440 (668)
88 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.4 83 0.0018 31.5 13.4 121 205-340 63-195 (527)
89 PRK04043 tolB translocation pr 73.7 89 0.0019 30.2 13.8 102 224-342 212-317 (419)
90 COG4946 Uncharacterized protei 73.3 93 0.002 30.2 13.3 126 38-184 263-398 (668)
91 cd01206 Homer Homer type EVH1 73.3 10 0.00022 28.5 5.0 41 109-158 10-51 (111)
92 PF08450 SGL: SMP-30/Gluconola 73.1 64 0.0014 28.2 15.0 110 211-341 11-129 (246)
93 PF12458 DUF3686: ATPase invol 72.8 27 0.0006 33.1 8.8 134 99-281 237-384 (448)
94 PF08268 FBA_3: F-box associat 71.9 8.6 0.00019 30.1 4.9 56 315-370 5-67 (129)
95 TIGR03074 PQQ_membr_DH membran 70.7 1.4E+02 0.0031 31.3 14.6 32 204-239 187-220 (764)
96 PF02897 Peptidase_S9_N: Proly 70.0 1E+02 0.0023 29.4 24.9 119 209-342 285-412 (414)
97 KOG0291 WD40-repeat-containing 69.6 1.3E+02 0.0028 31.0 13.0 120 205-336 249-382 (893)
98 PRK04922 tolB translocation pr 69.3 1.1E+02 0.0024 29.5 19.8 145 167-341 227-375 (433)
99 smart00564 PQQ beta-propeller 68.6 14 0.0003 20.6 4.1 24 317-340 7-30 (33)
100 PRK04792 tolB translocation pr 68.2 1.2E+02 0.0026 29.5 20.7 145 167-341 241-389 (448)
101 KOG3545 Olfactomedin and relat 67.6 87 0.0019 27.6 11.1 128 203-344 69-212 (249)
102 PF03088 Str_synth: Strictosid 67.1 13 0.00028 27.1 4.4 16 326-341 37-52 (89)
103 PF13570 PQQ_3: PQQ-like domai 67.0 19 0.00041 21.4 4.6 26 205-234 15-40 (40)
104 PF01011 PQQ: PQQ enzyme repea 66.7 14 0.0003 21.8 3.9 25 317-341 1-25 (38)
105 KOG2055 WD40 repeat protein [G 66.6 24 0.00053 33.7 7.1 70 264-343 227-297 (514)
106 PRK05137 tolB translocation pr 66.2 1.3E+02 0.0028 29.1 21.3 188 110-341 182-373 (435)
107 PRK11028 6-phosphogluconolacto 65.1 1.1E+02 0.0025 28.0 15.4 121 210-342 184-314 (330)
108 PRK00178 tolB translocation pr 65.0 1.3E+02 0.0029 28.8 21.4 144 167-341 222-370 (430)
109 TIGR02658 TTQ_MADH_Hv methylam 63.7 1.3E+02 0.0029 28.3 19.9 211 95-340 52-293 (352)
110 COG1520 FOG: WD40-like repeat 63.6 1.3E+02 0.0029 28.2 12.2 111 207-341 64-178 (370)
111 PF03088 Str_synth: Strictosid 63.1 23 0.00049 25.8 5.1 32 209-240 6-52 (89)
112 TIGR02800 propeller_TolB tol-p 61.7 1.5E+02 0.0032 28.2 19.9 187 110-341 214-404 (417)
113 cd00200 WD40 WD40 domain, foun 61.5 1E+02 0.0023 26.3 20.7 96 225-339 115-212 (289)
114 KOG0299 U3 snoRNP-associated p 60.5 1.6E+02 0.0035 28.3 18.6 63 253-323 382-444 (479)
115 cd01207 Ena-Vasp Enabled-VASP- 59.8 27 0.00058 26.6 5.1 44 109-158 8-51 (111)
116 KOG2437 Muskelin [Signal trans 59.7 17 0.00038 35.1 4.9 144 112-270 231-394 (723)
117 COG4257 Vgb Streptogramin lyas 59.3 1.1E+02 0.0023 27.7 9.3 104 225-343 124-227 (353)
118 KOG0265 U5 snRNP-specific prot 59.2 50 0.0011 29.9 7.4 66 261-339 58-125 (338)
119 PF03178 CPSF_A: CPSF A subuni 59.1 1.5E+02 0.0032 27.3 14.6 97 225-343 62-168 (321)
120 PRK04043 tolB translocation pr 57.8 1.8E+02 0.004 28.0 20.8 186 109-341 212-407 (419)
121 PLN02919 haloacid dehalogenase 57.5 3E+02 0.0065 30.4 24.6 232 95-341 574-840 (1057)
122 PRK04922 tolB translocation pr 57.3 1.9E+02 0.0041 28.0 19.5 188 110-342 228-419 (433)
123 KOG0319 WD40-repeat-containing 56.7 2.4E+02 0.0052 29.0 14.6 191 95-336 25-224 (775)
124 KOG0289 mRNA splicing factor [ 56.5 1.9E+02 0.0041 27.8 12.8 115 209-342 356-470 (506)
125 PLN02919 haloacid dehalogenase 53.9 3.4E+02 0.0074 29.9 24.3 73 260-338 813-892 (1057)
126 COG3386 Gluconolactonase [Carb 53.8 1.8E+02 0.0039 26.7 11.7 110 212-341 37-158 (307)
127 KOG2502 Tub family proteins [G 53.7 8.1 0.00017 35.5 1.7 37 2-38 45-89 (355)
128 KOG1963 WD40 repeat protein [G 53.2 2.9E+02 0.0062 28.9 15.6 103 226-340 433-545 (792)
129 PRK02889 tolB translocation pr 51.7 2.3E+02 0.005 27.3 20.4 145 167-341 219-367 (427)
130 PF14583 Pectate_lyase22: Olig 51.5 2.2E+02 0.0048 27.1 13.8 105 223-341 166-279 (386)
131 KOG0292 Vesicle coat complex C 50.7 89 0.0019 32.9 8.4 91 258-360 212-304 (1202)
132 KOG2106 Uncharacterized conser 49.7 2.7E+02 0.0058 27.4 13.5 35 308-343 411-445 (626)
133 KOG2048 WD40 repeat protein [G 48.9 3.1E+02 0.0067 27.9 18.2 197 96-335 211-414 (691)
134 KOG2321 WD40 repeat protein [G 48.7 1.3E+02 0.0027 30.0 8.8 32 93-124 180-211 (703)
135 KOG0291 WD40-repeat-containing 48.6 3.3E+02 0.0072 28.3 21.7 110 207-336 440-552 (893)
136 KOG0315 G-protein beta subunit 46.5 2.1E+02 0.0046 25.4 13.0 179 108-337 18-200 (311)
137 PF13013 F-box-like_2: F-box-l 46.3 5 0.00011 30.5 -0.7 29 2-30 22-50 (109)
138 PRK01742 tolB translocation pr 46.0 2.8E+02 0.0061 26.7 18.7 141 167-341 227-368 (429)
139 PF05096 Glu_cyclase_2: Glutam 44.9 2.3E+02 0.005 25.4 17.3 143 166-341 66-210 (264)
140 KOG0319 WD40-repeat-containing 44.6 3.7E+02 0.0081 27.7 11.7 101 225-339 40-140 (775)
141 KOG2315 Predicted translation 43.9 3.4E+02 0.0073 27.0 14.8 142 99-281 229-390 (566)
142 PF07433 DUF1513: Protein of u 42.4 2.7E+02 0.006 25.5 19.2 215 102-341 19-254 (305)
143 PF14157 YmzC: YmzC-like prote 42.0 41 0.00089 22.5 3.1 15 327-341 42-56 (63)
144 KOG0279 G protein beta subunit 41.9 1.1E+02 0.0025 27.4 6.8 99 225-343 172-272 (315)
145 PRK03629 tolB translocation pr 41.8 3.3E+02 0.0072 26.3 22.1 188 110-341 179-370 (429)
146 PF07569 Hira: TUP1-like enhan 41.6 2E+02 0.0044 24.9 8.5 71 310-385 72-142 (219)
147 KOG1274 WD40 repeat protein [G 40.5 4.8E+02 0.01 27.7 19.5 73 261-337 149-221 (933)
148 KOG2321 WD40 repeat protein [G 40.1 2.5E+02 0.0055 28.0 9.3 112 213-341 147-265 (703)
149 PTZ00420 coronin; Provisional 39.7 2E+02 0.0043 29.1 9.1 66 261-338 136-201 (568)
150 KOG0300 WD40 repeat-containing 39.0 1.2E+02 0.0027 27.7 6.6 61 270-341 375-435 (481)
151 KOG3926 F-box proteins [Amino 38.2 14 0.00031 32.6 0.8 40 2-41 202-242 (332)
152 KOG0303 Actin-binding protein 37.9 2.4E+02 0.0052 26.8 8.5 59 272-342 153-211 (472)
153 KOG0266 WD40 repeat-containing 36.5 4.2E+02 0.009 25.9 19.9 194 98-339 168-369 (456)
154 KOG0301 Phospholipase A2-activ 36.4 4.9E+02 0.011 26.7 12.8 94 215-332 192-286 (745)
155 cd00200 WD40 WD40 domain, foun 35.8 2.7E+02 0.0059 23.6 20.8 189 97-339 59-254 (289)
156 COG0823 TolB Periplasmic compo 35.8 1.2E+02 0.0027 29.3 6.8 73 261-343 248-323 (425)
157 PF12768 Rax2: Cortical protei 34.1 2.2E+02 0.0047 25.9 7.7 67 166-242 14-81 (281)
158 KOG0639 Transducin-like enhanc 33.5 2.6E+02 0.0057 27.4 8.2 103 224-339 439-544 (705)
159 PF14339 DUF4394: Domain of un 33.3 1.4E+02 0.0029 26.3 5.9 55 98-156 36-92 (236)
160 PTZ00421 coronin; Provisional 33.3 4.9E+02 0.011 25.8 23.0 200 100-339 87-295 (493)
161 KOG0315 G-protein beta subunit 33.2 3.5E+02 0.0076 24.1 20.0 103 223-336 144-247 (311)
162 PF00568 WH1: WH1 domain; Int 31.8 1.8E+02 0.0039 22.0 5.9 40 109-158 15-55 (111)
163 PF12768 Rax2: Cortical protei 30.5 4.1E+02 0.009 24.1 12.2 66 110-185 16-81 (281)
164 KOG0293 WD40 repeat-containing 29.3 1E+02 0.0022 29.3 4.7 67 261-339 323-389 (519)
165 KOG0283 WD40 repeat-containing 28.8 2.5E+02 0.0053 29.0 7.7 55 274-340 433-487 (712)
166 PF14870 PSII_BNR: Photosynthe 28.5 4.7E+02 0.01 24.0 16.3 109 215-343 74-183 (302)
167 KOG0293 WD40 repeat-containing 27.5 5.6E+02 0.012 24.6 15.7 114 225-359 376-493 (519)
168 KOG4152 Host cell transcriptio 27.1 6.3E+02 0.014 25.1 10.7 168 166-349 55-251 (830)
169 PF10902 DUF2693: Protein of u 26.9 66 0.0014 23.1 2.5 17 327-343 50-66 (83)
170 KOG0279 G protein beta subunit 26.8 4.8E+02 0.01 23.6 19.4 138 109-282 126-263 (315)
171 KOG0295 WD40 repeat-containing 26.4 4.7E+02 0.01 24.6 8.3 67 263-341 305-371 (406)
172 KOG0286 G-protein beta subunit 26.2 5.1E+02 0.011 23.7 18.5 181 109-337 76-262 (343)
173 PLN02772 guanylate kinase 26.1 3.8E+02 0.0083 25.7 8.1 57 153-220 36-95 (398)
174 PF00400 WD40: WD domain, G-be 26.1 1.3E+02 0.0029 16.9 6.8 39 289-332 1-39 (39)
175 KOG0318 WD40 repeat stress pro 25.5 4.4E+02 0.0096 26.1 8.3 35 307-341 490-524 (603)
176 PRK10115 protease 2; Provision 25.2 7.9E+02 0.017 25.6 24.5 119 209-342 277-402 (686)
177 KOG2714 SETA binding protein S 24.9 6.4E+02 0.014 24.4 10.5 71 110-184 245-318 (465)
178 PRK03629 tolB translocation pr 24.7 6.4E+02 0.014 24.3 19.9 187 109-341 222-413 (429)
179 cd00216 PQQ_DH Dehydrogenases 24.2 7E+02 0.015 24.6 13.6 128 208-341 106-271 (488)
180 PF15408 PH_7: Pleckstrin homo 23.9 28 0.00062 24.8 0.2 20 23-42 80-99 (104)
181 cd00837 EVH1 EVH1 (Enabled, Va 23.0 3.1E+02 0.0067 20.4 5.8 41 109-158 8-48 (104)
182 PF01436 NHL: NHL repeat; Int 23.0 1.4E+02 0.003 16.0 4.0 23 309-331 6-28 (28)
183 PF13854 Kelch_5: Kelch motif 22.9 1.8E+02 0.0039 17.3 4.3 27 255-281 8-38 (42)
184 KOG2096 WD40 repeat protein [G 22.4 2.2E+02 0.0048 26.2 5.4 68 260-335 96-164 (420)
185 PF07569 Hira: TUP1-like enhan 22.2 5.2E+02 0.011 22.3 9.0 85 90-185 12-104 (219)
186 TIGR02276 beta_rpt_yvtn 40-res 21.7 1.8E+02 0.0038 16.8 4.5 25 315-339 2-27 (42)
187 KOG0650 WD40 repeat nucleolar 21.3 1.2E+02 0.0026 30.4 3.8 31 306-336 609-639 (733)
188 PF05935 Arylsulfotrans: Aryls 21.0 8E+02 0.017 24.1 11.4 125 208-341 155-308 (477)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=7.4e-36 Score=263.57 Aligned_cols=224 Identities=27% Similarity=0.427 Sum_probs=163.6
Q ss_pred eeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 96 LGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 96 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
+++||||||+... ..++||||+||+++.||+++...... ....++||||+.+++||||++...... .....++||++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~ 77 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTL 77 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccc-ccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEe
Confidence 4799999998864 78999999999999999876210111 122689999999999999999864321 24568999999
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCC-CC-cEEEEEECCCceee-eecCCCcccccCCc
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS-TR-SVIVAFDLVAEEFY-QLPLPDSVNVSYAN 252 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-~~-~~il~fD~~~e~~~-~i~lP~~~~~~~~~ 252 (393)
++++||.+...+. ... ....+|++||++||++.... .. ..|++||+.+|+|+ .+++|.... ...
T Consensus 78 ~~~~Wr~~~~~~~----------~~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~--~~~ 144 (230)
T TIGR01640 78 GSNSWRTIECSPP----------HHP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS--DSV 144 (230)
T ss_pred CCCCccccccCCC----------Ccc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc--ccc
Confidence 9999999874331 111 22238999999999986522 22 37999999999999 589997643 122
Q ss_pred eeEEEEEeCCeEEEEEEcCC-CeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc--CcEEE
Q 046902 253 VHVDVGSLEGCLCVFRFYNL-VYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR--REKLV 329 (393)
Q Consensus 253 ~~~~l~~~~G~L~~~~~~~~-~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~--~~~l~ 329 (393)
....|++++|+||++..... ..++||+|++++. ..|+|.++|+............|+++..+|++++...+ ...++
T Consensus 145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~ 223 (230)
T TIGR01640 145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIF 223 (230)
T ss_pred cceEEEEECCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEE
Confidence 24689999999999987643 4799999998874 55999999986432222122558888888654444432 22399
Q ss_pred EEECCCC
Q 046902 330 WFDLETN 336 (393)
Q Consensus 330 ~yd~~t~ 336 (393)
+||++++
T Consensus 224 ~y~~~~~ 230 (230)
T TIGR01640 224 YYNVGEN 230 (230)
T ss_pred EEeccCC
Confidence 9999986
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.73 E-value=3.9e-16 Score=129.82 Aligned_cols=150 Identities=29% Similarity=0.505 Sum_probs=99.8
Q ss_pred eeEeCceEEEeccCCCCCc--EEEEEECCCcee-eeecCCCcccccCCceeEEEEE-eCCeEEEEEEcCC-CeEEEEEEe
Q 046902 207 GVLAGGALHWVSPKSSTRS--VIVAFDLVAEEF-YQLPLPDSVNVSYANVHVDVGS-LEGCLCVFRFYNL-VYVDMWMMK 281 (393)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~--~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~-~~~~iW~l~ 281 (393)
+|++||++||++....... .|++||+++|+| ..+++|.... .......|++ .+|+||++..... ..++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~--~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND--DDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC--ccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 5899999999998633322 799999999999 8899998764 1233457754 4789999975433 379999999
Q ss_pred ecCC-CCCeEEEEEeeCCCCCCCcce-eeEEEEEeCCcEEEEEEc-C------cEEEEEECCCCcEEEEEEecCCCCeee
Q 046902 282 EHAV-KESWTKLFSVQEPTPTRSFLF-LRPLGYSRNGVKLLLEVR-R------EKLVWFDLETNSLRTVKIDTHGLDFVD 352 (393)
Q Consensus 282 ~~~~-~~~W~~~~~i~~~~~~~~~~~-~~~~~~~~~g~~i~l~~~-~------~~l~~yd~~t~~~~~v~~~~~~~~~~~ 352 (393)
+++. .++|+|.++|+.......... ..+..+..+++.+++..+ . ..++.|+ +++..+++.+.....-...
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~ 157 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPS 157 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCC
Confidence 7653 689999999997543322111 122222333334555432 1 3477887 7778888866211112666
Q ss_pred eEEEEec
Q 046902 353 TEICMAS 359 (393)
Q Consensus 353 ~~~y~~S 359 (393)
++.|+||
T Consensus 158 ~~~YvpS 164 (164)
T PF07734_consen 158 ICNYVPS 164 (164)
T ss_pred EEEECCC
Confidence 7799987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.67 E-value=1.1e-15 Score=121.73 Aligned_cols=112 Identities=22% Similarity=0.422 Sum_probs=84.7
Q ss_pred eeEeCceEEEeccC-CCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCC---eEEEEEEee
Q 046902 207 GVLAGGALHWVSPK-SSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLV---YVDMWMMKE 282 (393)
Q Consensus 207 ~v~~~G~lyw~~~~-~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~---~~~iW~l~~ 282 (393)
|+++||.+||++.. ......|++||+.+|+|+.+++|.... .......|.+++|+|+++...... .++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~--~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY--SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec--cccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 58999999999876 445689999999999999999992221 233356999999999999876543 599999999
Q ss_pred cCCCCCeEEEEEeeCCCCCCC--cceeeEEEEEeCCcEEEE
Q 046902 283 HAVKESWTKLFSVQEPTPTRS--FLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~--~~~~~~~~~~~~g~~i~l 321 (393)
++ +++|++++.+-+...... .....+.++..+|++|+.
T Consensus 79 ~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 79 YE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 87 588998876544322111 135678899888876666
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.58 E-value=7.1e-13 Score=121.38 Aligned_cols=322 Identities=12% Similarity=0.107 Sum_probs=160.7
Q ss_pred CCCCcHHHHHHHhccCC-ccceeeeeecccchhhhcCChHHHHHHHhcccCCCCceEEEeecCCCeeeecCCCCCCCCc-
Q 046902 2 SKKIPLDIITGIFCRQP-VKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAHDLYALDFDTLTLGTG- 79 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (393)
|++||+||+..|..||| ..+++|||+||++||+.+.... ...... ..+.++..... +..++.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~-----~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~ 71 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG-----KKNPFR--TRPLILFNPIN-----PSETLTDDRSY 71 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc-----ccCCcc--cccccccCccc-----CCCCccccccc
Confidence 67899999999999998 6699999999999999876421 000011 11111111100 0000000000
Q ss_pred ccccCCCCCCCCccEE---eeeeeceEEEeeC---CceEEEEeccccceeccCCCCCCCCCCC-C----ceEEEE-eeeC
Q 046902 80 VQPHHHPLNIGSGTEV---LGSCNGLIALCNS---VQELALFNPSTRKLKTLPLPPCLVGFPS-A----FTFYGF-GQDK 147 (393)
Q Consensus 80 ~~~~~~p~~~~~~~~~---~~s~~GLl~~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~-~----~~~~~~-g~d~ 147 (393)
.......+....-+.+ .++..|.|.-.+. ...+.+.||+++.-..+|+-. .+.-. . ...+.+ +.+.
T Consensus 72 ~~~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~--lnll~f~v~ei~~~y~l~~~~~ 149 (373)
T PLN03215 72 ISRPGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSES--VDLLEFTVSEIREAYQVLDWAK 149 (373)
T ss_pred cccccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCcc--ceeeeeEEEEccceEEEEeccc
Confidence 0000000000001111 1356788776653 367999999999977776422 12111 0 011111 1110
Q ss_pred C---CCCe--EEEEEEEeecCCC-CccEEEEEE------eCCCCeEEccccCcccccccccccccccccCceeEeCceEE
Q 046902 148 I---NDDY--KLVRVLHFKGNDG-DDVEVEVYS------LKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALH 215 (393)
Q Consensus 148 ~---~~~y--kVv~~~~~~~~~~-~~~~~~Vys------s~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~ly 215 (393)
. ...| |++.. ....++ ....+-|+. -..++|..++... .....-|+.+|++|
T Consensus 150 ~~~~~~~~~~~~~~~--~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~--------------~~~~DIi~~kGkfY 213 (373)
T PLN03215 150 RRETRPGYQRSALVK--VKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMG--------------YHFSDIIVHKGQTY 213 (373)
T ss_pred ccccccceeEEEEEE--eecCCCcceEEEEEeecCcEeeecCCeeeEccCCC--------------ceeeEEEEECCEEE
Confidence 0 0012 22211 111111 001111111 1147888886432 12445689999999
Q ss_pred EeccCCCCCcEEEEEECCCceeeeecCCCc--ccccCCceeEEEEEeCCeEEEEEEcC----------------CCeEEE
Q 046902 216 WVSPKSSTRSVIVAFDLVAEEFYQLPLPDS--VNVSYANVHVDVGSLEGCLCVFRFYN----------------LVYVDM 277 (393)
Q Consensus 216 w~~~~~~~~~~il~fD~~~e~~~~i~lP~~--~~~~~~~~~~~l~~~~G~L~~~~~~~----------------~~~~~i 277 (393)
.+... ..+.++|..-+ .+.+..+.. ...........|+++.|.|+||...- ...+.|
T Consensus 214 AvD~~----G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~V 288 (373)
T PLN03215 214 ALDSI----GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKV 288 (373)
T ss_pred EEcCC----CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEE
Confidence 98433 46777774321 122211110 00000112457999999999997531 125788
Q ss_pred EEEeecCCCCCeEEEEEeeCCCCCCCcc-eeeEEE--E-EeCCcEEEEEEcCcEEEEEECCCCcEEEEEEecCCCCeeee
Q 046902 278 WMMKEHAVKESWTKLFSVQEPTPTRSFL-FLRPLG--Y-SRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDFVDT 353 (393)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~-~~~~~~--~-~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~ 353 (393)
+.++.. ...|+++.+++-..++-... .....+ + .-.+|.||+..+ ....+||++.++...+.........-.+
T Consensus 289 fklD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd-~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 365 (373)
T PLN03215 289 YKFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED-TMPKVFKLDNGNGSSIETTISESSQSSF 365 (373)
T ss_pred EEEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC-CcceEEECCCCCccceEeecCccccchh
Confidence 888742 46899999887433221111 000000 0 013578998854 4588999999998877542122113334
Q ss_pred EEEEeccc
Q 046902 354 EICMASLV 361 (393)
Q Consensus 354 ~~y~~SL~ 361 (393)
.+|++|++
T Consensus 366 ~~~~~~~~ 373 (373)
T PLN03215 366 EMFVPSFL 373 (373)
T ss_pred eeeccccC
Confidence 56777763
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.43 E-value=2.2e-11 Score=120.60 Aligned_cols=210 Identities=10% Similarity=0.089 Sum_probs=132.0
Q ss_pred eeeeeceEEEeeC-------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCcc
Q 046902 96 LGSCNGLIALCNS-------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDV 168 (393)
Q Consensus 96 ~~s~~GLl~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~ 168 (393)
++..+|-|.+.+. ...+..+||.+++|..+|+++ ... ....... ++ =||.+++.... .....
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R-~~~~~~~--~~-----g~IYviGG~~~-~~~~~ 367 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI--KNR-CRFSLAV--ID-----DTIYAIGGQNG-TNVER 367 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc--chh-hceeEEE--EC-----CEEEEECCcCC-CCCCc
Confidence 4445565554432 135889999999999999987 221 1111111 12 25666654321 11245
Q ss_pred EEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCC--------------------CCcEEE
Q 046902 169 EVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--------------------TRSVIV 228 (393)
Q Consensus 169 ~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--------------------~~~~il 228 (393)
.+++|++.+++|+.++.+|. .......+.++|.+|.+++... ....+.
T Consensus 368 sve~Ydp~~~~W~~~~~mp~------------~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPI------------ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred eEEEEECCCCeEEECCCCCc------------ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEE
Confidence 79999999999999988872 2234456789999999986421 124699
Q ss_pred EEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCC-C-CCeEEEEEeeCCCCCCCcc
Q 046902 229 AFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV-K-ESWTKLFSVQEPTPTRSFL 305 (393)
Q Consensus 229 ~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~-~-~~W~~~~~i~~~~~~~~~~ 305 (393)
+||+.+++|+.++ +|.... ...+++.+|+||++++........=..+.|+. . +.|+.+..++....
T Consensus 436 ~YDP~td~W~~v~~m~~~r~------~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~----- 504 (557)
T PHA02713 436 RYDTVNNIWETLPNFWTGTI------RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS----- 504 (557)
T ss_pred EECCCCCeEeecCCCCcccc------cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-----
Confidence 9999999999874 443322 34678999999999875422111112344544 3 47999887664321
Q ss_pred eeeEEEEEeCCcEEEEEEc-Cc--EEEEEECCCCcEEEEE
Q 046902 306 FLRPLGYSRNGVKLLLEVR-RE--KLVWFDLETNSLRTVK 342 (393)
Q Consensus 306 ~~~~~~~~~~g~~i~l~~~-~~--~l~~yd~~t~~~~~v~ 342 (393)
...+++. + +.|++... +. .+-+||++|++|..+.
T Consensus 505 -~~~~~~~-~-~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 505 -ALHTILH-D-NTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred -cceeEEE-C-CEEEEEeeecceeehhhcCcccccccchh
Confidence 1222332 3 45665432 22 4889999999999883
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.38 E-value=4.5e-11 Score=118.07 Aligned_cols=210 Identities=18% Similarity=0.242 Sum_probs=140.3
Q ss_pred EEeeeeeceEEEeeC-------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCC
Q 046902 94 EVLGSCNGLIALCNS-------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGD 166 (393)
Q Consensus 94 ~~~~s~~GLl~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 166 (393)
..++..+|.|...+. ...+..+||.+++|..+|++. .. ...++++. . ..+|.+++.... ...
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~--~~----R~~~~v~~--l--~g~iYavGG~dg-~~~ 394 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN--TK----RSDFGVAV--L--DGKLYAVGGFDG-EKS 394 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc--Cc----cccceeEE--E--CCEEEEEecccc-ccc
Confidence 345566666665541 246899999999999999987 21 11222221 1 246666665432 224
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCC---cEEEEEECCCceeeee-cC
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTR---SVIVAFDLVAEEFYQL-PL 242 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~il~fD~~~e~~~~i-~l 242 (393)
...+|.|++.++.|..++.++. .+.....+.++|.+|-+++.+... ..+.+||+.+++|+.+ ++
T Consensus 395 l~svE~YDp~~~~W~~va~m~~------------~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M 462 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLT------------RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM 462 (571)
T ss_pred cccEEEecCCCCcccccCCCCc------------ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc
Confidence 5579999999999999988771 234555678999999998863333 6899999999999997 46
Q ss_pred CCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE
Q 046902 243 PDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 243 P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l 321 (393)
+.... ...+++++|+||++++... .-.+=..+-|+. .+.|+.+..+.... ...++...++.+|+
T Consensus 463 ~~~R~------~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~r--------s~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 463 NTRRS------GFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPR--------SAVGVVVLGGKLYA 527 (571)
T ss_pred ccccc------cceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCcccc--------ccccEEEECCEEEE
Confidence 65442 3568999999999997654 211222343433 57899986565532 12233333456666
Q ss_pred EEcC------cEEEEEECCCCcEEEE
Q 046902 322 EVRR------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 322 ~~~~------~~l~~yd~~t~~~~~v 341 (393)
.... ..+-.||+++++|+.+
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EecccCccccceeEEcCCCCCceeeC
Confidence 5321 2599999999999987
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.30 E-value=3.7e-10 Score=111.97 Aligned_cols=235 Identities=9% Similarity=0.034 Sum_probs=139.0
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCccc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
.+..+||.+++|..+++++ .... ....+. ++ -+|+.++...........++.|++.++.|..++.+|.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp--~~r~-~~~~a~--l~-----~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~-- 340 (557)
T PHA02713 273 CILVYNINTMEYSVISTIP--NHII-NYASAI--VD-----NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK-- 340 (557)
T ss_pred CEEEEeCCCCeEEECCCCC--cccc-ceEEEE--EC-----CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--
Confidence 4678999999999999887 2211 111111 11 2555555422111124578999999999999988772
Q ss_pred ccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEE
Q 046902 191 RDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVF 267 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~ 267 (393)
.+.....+.++|++|.+++... ....+.+||+.+++|+.++ +|.... ....++++|+||++
T Consensus 341 ----------~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~------~~~~~~~~g~IYvi 404 (557)
T PHA02713 341 ----------NRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS------SYGMCVLDQYIYII 404 (557)
T ss_pred ----------hhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc------cccEEEECCEEEEE
Confidence 2234456889999999987522 2346999999999999874 554432 34677899999999
Q ss_pred EEcCCCe-----------------EEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC----
Q 046902 268 RFYNLVY-----------------VDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---- 325 (393)
Q Consensus 268 ~~~~~~~-----------------~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---- 325 (393)
++..... ...-.++.|+. .+.|+.+..+..... ...+++. +| .||+....
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~------~~~~~~~-~~-~IYv~GG~~~~~ 476 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI------RPGVVSH-KD-DIYVVCDIKDEK 476 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc------cCcEEEE-CC-EEEEEeCCCCCC
Confidence 8753210 00112333433 467988765544321 1122332 44 55554321
Q ss_pred ---cEEEEEECCC-CcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhh
Q 046902 326 ---EKLVWFDLET-NSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKR 388 (393)
Q Consensus 326 ---~~l~~yd~~t-~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
..+..||+++ ++|+.+.- -..+ ...+..+-..|.-+..... ....|.=+.+..+|.
T Consensus 477 ~~~~~ve~Ydp~~~~~W~~~~~--m~~~r~~~~~~~~~~~iyv~Gg~~~-----~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 477 NVKTCIFRYNTNTYNGWELITT--TESRLSALHTILHDNTIMMLHCYES-----YMLQDTFNVYTYEWN 538 (557)
T ss_pred ccceeEEEecCCCCCCeeEccc--cCcccccceeEEECCEEEEEeeecc-----eeehhhcCccccccc
Confidence 2367999999 89998832 1112 3445555555554443322 123455555555553
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.25 E-value=7.1e-10 Score=109.63 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=133.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+..+||.+++|..+.+++ .... .++.+.-. -+|.+++....+......+++|++.+++|..++.|.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~--~~r~----~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-- 368 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP--SPRC----RVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-- 368 (571)
T ss_pred ceeEEecCCcCcEeecCCCC--cccc----cccEEEEC----CEEEEEccccCCCcccceEEEecCCCCceeccCCcc--
Confidence 45778999999999999988 2211 22222221 166666554322234578999999999999988776
Q ss_pred cccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
..+.....+.++|.+|.+++.++ .-..+..||+.+++|..+. ++... .....++.+|+||+
T Consensus 369 ----------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r------~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 369 ----------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR------SGHGVAVLGGKLYI 432 (571)
T ss_pred ----------CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce------eeeEEEEECCEEEE
Confidence 22344556789999999987632 2256999999999999985 66533 24688999999999
Q ss_pred EEEcCCCeEEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEE
Q 046902 267 FRFYNLVYVDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLR 339 (393)
Q Consensus 267 ~~~~~~~~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~ 339 (393)
+++.....-.+=.++.|++ .+.|+.+..|..... ...+++. + +.||..... ..+-.||+++++|.
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~------~~g~a~~-~-~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS------GFGVAVL-N-GKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccc------cceEEEE-C-CEEEEECCccCCCccceEEEEcCCCCcee
Confidence 9986543323333444544 578999887776431 2224443 3 456665331 24888999999999
Q ss_pred EEE
Q 046902 340 TVK 342 (393)
Q Consensus 340 ~v~ 342 (393)
.+.
T Consensus 505 ~v~ 507 (571)
T KOG4441|consen 505 MVA 507 (571)
T ss_pred Ecc
Confidence 994
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.24 E-value=1.8e-09 Score=107.38 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=121.4
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCccc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
.++.+||.|++|..+|+++ ... .....+.+ + =+|..++.... ......+++|+..+++|+.++.+|.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~--~~R-~~~~~~~~--~-----~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~lp~-- 378 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELI--YPR-KNPGVTVF--N-----NRIYVIGGIYN-SISLNTVESWKPGESKWREEPPLIF-- 378 (534)
T ss_pred cEEEEeCCCCeeeECCCCC--ccc-ccceEEEE--C-----CEEEEEeCCCC-CEecceEEEEcCCCCceeeCCCcCc--
Confidence 6899999999999999877 221 11222221 1 14555554321 1234578999999999999887771
Q ss_pred ccccccccccccccCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEE
Q 046902 191 RDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
.+.....+.++|.+|.+++.. .....+..||+.+++|+.+. +|.... ....+..+|+|++
T Consensus 379 ----------~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~------~~~~~~~~~~iyv 442 (534)
T PHA03098 379 ----------PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY------GGCAIYHDGKIYV 442 (534)
T ss_pred ----------CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc------CceEEEECCEEEE
Confidence 223445678999999998741 12357999999999999874 443322 2356778999999
Q ss_pred EEEcCCC-----eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc------CcEEEEEECCC
Q 046902 267 FRFYNLV-----YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR------REKLVWFDLET 335 (393)
Q Consensus 267 ~~~~~~~-----~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~------~~~l~~yd~~t 335 (393)
+++.... .-.+|..+- ..+.|+.+..++.+. .....++. ++ .|++... ...+..||+++
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r------~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNP--VTNKWTELSSLNFPR------INASLCIF-NN-KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ECCccCCCCCcccceEEEecC--CCCceeeCCCCCccc------ccceEEEE-CC-EEEEEcCCcCCcccceeEEEeCCC
Confidence 9865321 123555553 246899875444321 11112222 44 4555432 13599999999
Q ss_pred CcEEEE
Q 046902 336 NSLRTV 341 (393)
Q Consensus 336 ~~~~~v 341 (393)
++|+.+
T Consensus 513 ~~W~~~ 518 (534)
T PHA03098 513 NTWTLF 518 (534)
T ss_pred CEEEec
Confidence 999988
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.22 E-value=2.5e-09 Score=104.39 Aligned_cols=184 Identities=13% Similarity=0.009 Sum_probs=118.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+..+||.+++|..+|+++ ... .....+. .+ -+|.+++... ....++.|+..+++|..++.+|.
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~--~~r-~~~~~v~--~~-----~~iYviGG~~----~~~sve~ydp~~n~W~~~~~l~~- 351 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMN--SPR-LYASGVP--AN-----NKLYVVGGLP----NPTSVERWFHGDAAWVNMPSLLK- 351 (480)
T ss_pred CeEEEEECCCCEEEECCCCC--chh-hcceEEE--EC-----CEEEEECCcC----CCCceEEEECCCCeEEECCCCCC-
Confidence 35778999999999999987 221 1111211 11 2555555321 12458999999999999988772
Q ss_pred cccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
.+.....+.++|.+|.+++.......+..||+.+++|+.++ +|.... ....++.+|+|++++
T Consensus 352 -----------~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~------~~~~~~~~~~IYv~G 414 (480)
T PHA02790 352 -----------PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY------KSCALVFGRRLFLVG 414 (480)
T ss_pred -----------CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc------cceEEEECCEEEEEC
Confidence 22345578899999999875333356889999999999974 333221 346678999999998
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~~v 341 (393)
+. .++. +.. .+.|+.+..++.+. ....+++. +| .||+.... ..+..||+++++|+.-
T Consensus 415 G~----~e~y---dp~-~~~W~~~~~m~~~r------~~~~~~v~-~~-~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 415 RN----AEFY---CES-SNTWTLIDDPIYPR------DNPELIIV-DN-KLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred Cc----eEEe---cCC-CCcEeEcCCCCCCc------cccEEEEE-CC-EEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 52 2221 222 46899876554322 11122332 44 56664321 3588999999999754
No 11
>PLN02153 epithiospecifier protein
Probab=99.16 E-value=1.9e-08 Score=94.13 Aligned_cols=210 Identities=11% Similarity=0.011 Sum_probs=118.9
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++||.+++|..+|++. .........+++... . =+|+.++..... .....+++|++.+++|+.++.++..
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~--~~p~~~~~~~~~~~~--~--~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANG--DVPRISCLGVRMVAV--G--TKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred CcEEEEECCCCEEEEcCccC--CCCCCccCceEEEEE--C--CEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCC
Confidence 36899999999999988654 111110101111111 1 255555542211 1234689999999999988755210
Q ss_pred cccccccccccccccCceeEeCceEEEeccCCCC--------CcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeC
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSST--------RSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLE 261 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~--------~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~ 261 (393)
. ....+.....+..+|++|.+++.... -..+.+||+.+.+|..++.+.... .......++..+
T Consensus 123 ~-------~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~--~~r~~~~~~~~~ 193 (341)
T PLN02153 123 G-------GPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF--EKRGGAGFAVVQ 193 (341)
T ss_pred C-------CCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC--CCCCcceEEEEC
Confidence 0 01122345567899999999875211 135889999999999876432110 011123567789
Q ss_pred CeEEEEEEcCC---------C-eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------
Q 046902 262 GCLCVFRFYNL---------V-YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------ 325 (393)
Q Consensus 262 G~L~~~~~~~~---------~-~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------ 325 (393)
|+|+++..... . .-++++++- ....|+++........ .. ......+. + +.||+-...
T Consensus 194 ~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~-~r--~~~~~~~~-~-~~iyv~GG~~~~~~~ 266 (341)
T PLN02153 194 GKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPS-AR--SVFAHAVV-G-KYIIIFGGEVWPDLK 266 (341)
T ss_pred CeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCC-Cc--ceeeeEEE-C-CEEEEECcccCCccc
Confidence 99999865321 0 124666653 2467998765421110 01 11112222 3 445553221
Q ss_pred ---------cEEEEEECCCCcEEEEE
Q 046902 326 ---------EKLVWFDLETNSLRTVK 342 (393)
Q Consensus 326 ---------~~l~~yd~~t~~~~~v~ 342 (393)
..++.||+++++|+.+.
T Consensus 267 ~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 267 GHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred cccccccccccEEEEEcCccEEEecc
Confidence 25899999999999884
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.07 E-value=6.6e-08 Score=90.77 Aligned_cols=217 Identities=14% Similarity=0.076 Sum_probs=123.3
Q ss_pred eeeceEEEee--CCceEEEEec--cccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCC-----CCcc
Q 046902 98 SCNGLIALCN--SVQELALFNP--STRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGND-----GDDV 168 (393)
Q Consensus 98 s~~GLl~~~~--~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~-----~~~~ 168 (393)
..++-|.+.. ....+++.++ .+++|..+|+++ .........+. .+ =+|.+++...... ....
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p--~~~R~~~~~~~--~~-----~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFP--GGPRNQAVAAA--ID-----GKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCC--CCCcccceEEE--EC-----CEEEEEeCCCCCCCCCcceecc
Confidence 4445554433 2245777774 778999999876 21111111111 11 2566555432111 0234
Q ss_pred EEEEEEeCCCCeEEccc-cCcccccccccccccccccCcee-EeCceEEEeccCCCC-----------------------
Q 046902 169 EVEVYSLKTNSWRRISN-LPRFLRDFYDYLYHSLFRKGYGV-LAGGALHWVSPKSST----------------------- 223 (393)
Q Consensus 169 ~~~Vyss~t~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v-~~~G~lyw~~~~~~~----------------------- 223 (393)
.++.|++.+++|+.++. +| ........+ .++|+||.+++....
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p------------~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSP------------VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLI 153 (346)
T ss_pred cEEEEECCCCEEecCCCCCC------------CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhH
Confidence 69999999999999863 23 111122233 589999999764211
Q ss_pred -------------CcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCC---CeEEEEEEeecCCC
Q 046902 224 -------------RSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNL---VYVDMWMMKEHAVK 286 (393)
Q Consensus 224 -------------~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~~~iW~l~~~~~~ 286 (393)
...+.+||+.+++|+.+. +|.... ....++..+|+|++++.... ...++|..+-....
T Consensus 154 ~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~ 228 (346)
T TIGR03547 154 AAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT-----AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK 228 (346)
T ss_pred HHHhCCChhHcCccceEEEEECCCCceeECccCCCCcC-----CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCC
Confidence 157999999999999984 553221 13467888999999987532 13456665521124
Q ss_pred CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-----------------------cEEEEEECCCCcEEEE
Q 046902 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-----------------------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----------------------~~l~~yd~~t~~~~~v 341 (393)
..|+.+..++.+............++.-+| .|++.... ..+-+||+++++|+.+
T Consensus 229 ~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 229 LEWNKLPPLPPPKSSSQEGLAGAFAGISNG-VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred ceeeecCCCCCCCCCccccccEEeeeEECC-EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence 579987766532210000001111222244 55554321 1367899999999988
No 13
>PLN02193 nitrile-specifier protein
Probab=99.05 E-value=5.8e-08 Score=94.64 Aligned_cols=206 Identities=11% Similarity=0.080 Sum_probs=121.4
Q ss_pred eEEEEeccccceeccCCCCCCCCCCC-CceEEEE-eeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPS-AFTFYGF-GQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~-~~~~~~~-g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
.++++||.+++|..+|+.. ..+. ....+++ .++ =+++.++.... ......+++|++.+++|+.+..++.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g---~~P~~~~~~~~~v~~~-----~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~ 264 (470)
T PLN02193 194 HLYVFDLETRTWSISPATG---DVPHLSCLGVRMVSIG-----STLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPVEE 264 (470)
T ss_pred cEEEEECCCCEEEeCCCCC---CCCCCcccceEEEEEC-----CEEEEECCCCC-CCCCccEEEEECCCCEEEEcCcCCC
Confidence 5899999999999887542 1111 1111111 111 14554443221 1123568999999999999875521
Q ss_pred ccccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
. ...+.....+.+++++|.++.... ....+.+||+.+.+|+.++.|.... .......++..+|++++
T Consensus 265 ~---------P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--~~R~~~~~~~~~gkiyv 333 (470)
T PLN02193 265 G---------PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF--SIRGGAGLEVVQGKVWV 333 (470)
T ss_pred C---------CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCC--CCCCCcEEEEECCcEEE
Confidence 0 012234456778999999986521 2346899999999999887543221 11123466778999999
Q ss_pred EEEcCCC-eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---------------cEEEE
Q 046902 267 FRFYNLV-YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---------------EKLVW 330 (393)
Q Consensus 267 ~~~~~~~-~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------------~~l~~ 330 (393)
+...... .-++|+++-. ...|+++..+..... ... ....++. ++ .|++-... ..++.
T Consensus 334 iGG~~g~~~~dv~~yD~~--t~~W~~~~~~g~~P~-~R~--~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPV--QDKWTQVETFGVRPS-ERS--VFASAAV-GK-HIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred EECCCCCccCceEEEECC--CCEEEEeccCCCCCC-Ccc--eeEEEEE-CC-EEEEECCccCCccccccCccceeccEEE
Confidence 9865322 3467887742 467998765522111 111 1122222 33 45543211 14899
Q ss_pred EECCCCcEEEEEE
Q 046902 331 FDLETNSLRTVKI 343 (393)
Q Consensus 331 yd~~t~~~~~v~~ 343 (393)
||++|++|+.+..
T Consensus 407 ~D~~t~~W~~~~~ 419 (470)
T PLN02193 407 LDTETLQWERLDK 419 (470)
T ss_pred EEcCcCEEEEccc
Confidence 9999999998853
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.00 E-value=1.6e-07 Score=89.03 Aligned_cols=258 Identities=13% Similarity=0.019 Sum_probs=138.5
Q ss_pred eeeeeceEEEee--CCceEEEEecc--ccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeec-CC----CC
Q 046902 96 LGSCNGLIALCN--SVQELALFNPS--TRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKG-ND----GD 166 (393)
Q Consensus 96 ~~s~~GLl~~~~--~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~-~~----~~ 166 (393)
.+..++-|.+.. ....++++++. +++|..+|+++ .........+.+ + + +|..++.... .. ..
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p--~~~r~~~~~v~~--~---~--~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFP--GGPREQAVAAFI--D---G--KLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCC--CCCcccceEEEE--C---C--EEEEEcCCCCCCCCCceeE
Confidence 344566555432 22457777765 57899999765 111111111111 1 2 4444443221 00 11
Q ss_pred ccEEEEEEeCCCCeEEcccc-CcccccccccccccccccCceeE-eCceEEEeccCCC----------------------
Q 046902 167 DVEVEVYSLKTNSWRRISNL-PRFLRDFYDYLYHSLFRKGYGVL-AGGALHWVSPKSS---------------------- 222 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~-p~~~~~~~~~~~~~~~~~~~~v~-~~G~lyw~~~~~~---------------------- 222 (393)
...+++|+..+++|+.+... | ........+. .+|+||.+++...
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p------------~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSP------------VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCC------------CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 34699999999999998742 3 1112223344 7999999987421
Q ss_pred --------------CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcC---CCeEEEEEEeecC
Q 046902 223 --------------TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYN---LVYVDMWMMKEHA 284 (393)
Q Consensus 223 --------------~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~~iW~l~~~~ 284 (393)
....+.+||+.+++|+.+. +|.... ....++..+++|++++... ....++|..+-+.
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~-----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT-----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC-----CcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 1246999999999999874 553221 1336677899999998742 2246677665322
Q ss_pred CCCCeEEEEEeeCCCCCC-CcceeeEEEEEeCCcEEEEEEcC-----------------------cEEEEEECCCCcEEE
Q 046902 285 VKESWTKLFSVQEPTPTR-SFLFLRPLGYSRNGVKLLLEVRR-----------------------EKLVWFDLETNSLRT 340 (393)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~-~~~~~~~~~~~~~g~~i~l~~~~-----------------------~~l~~yd~~t~~~~~ 340 (393)
....|+++..++...... ........++.-++ .||+.... ..+-.||+++++|+.
T Consensus 248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 326 (376)
T PRK14131 248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNG-VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK 326 (376)
T ss_pred CCcceeecCCCCCCCcCCcCCccceEeceeECC-EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence 246899887665422100 00011111222343 55554321 024579999999998
Q ss_pred EEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccch
Q 046902 341 VKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLE 383 (393)
Q Consensus 341 v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
+.- ...+ ...+...-..|+-+... ...+...+.....+.+
T Consensus 327 ~~~--lp~~r~~~~av~~~~~iyv~GG~-~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 327 VGE--LPQGLAYGVSVSWNNGVLLIGGE-TAGGKAVSDVTLLSWD 368 (376)
T ss_pred cCc--CCCCccceEEEEeCCEEEEEcCC-CCCCcEeeeEEEEEEc
Confidence 732 1112 33444455555555432 2233333344333333
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.98 E-value=1.6e-07 Score=87.29 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=95.2
Q ss_pred eEEEE-ecccc-ceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCe----EEcc
Q 046902 111 ELALF-NPSTR-KLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSW----RRIS 184 (393)
Q Consensus 111 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W----~~~~ 184 (393)
.+++. +|..+ +|..+++++ .... .... ..++ =+|+.++.... ......++.|+..++.| +.++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp--~~r~-~~~~--~~~~-----~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~ 108 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLP--YEAA-YGAS--VSVE-----NGIYYIGGSNS-SERFSSVYRITLDESKEELICETIG 108 (323)
T ss_pred eeEEEecCCCceeEEEcccCC--cccc-ceEE--EEEC-----CEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcC
Confidence 45655 45433 799888776 2111 1111 2221 14555553221 12345789999999988 6666
Q ss_pred ccCcccccccccccccccccCceeEeCceEEEeccC--CCCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeC
Q 046902 185 NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK--SSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLE 261 (393)
Q Consensus 185 ~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~--~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~ 261 (393)
.+| . ......++.++|++|.+++. ......+.+||+.+++|+.++ +|.... ....++..+
T Consensus 109 ~lp----------~--~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-----~~~~~~~~~ 171 (323)
T TIGR03548 109 NLP----------F--TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR-----VQPVCVKLQ 171 (323)
T ss_pred CCC----------c--CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC-----CcceEEEEC
Confidence 666 1 12345567899999999864 122357999999999999985 664221 123557889
Q ss_pred CeEEEEEEcCCC-eEEEEEEeecCCCCCeEEEEEe
Q 046902 262 GCLCVFRFYNLV-YVDMWMMKEHAVKESWTKLFSV 295 (393)
Q Consensus 262 G~L~~~~~~~~~-~~~iW~l~~~~~~~~W~~~~~i 295 (393)
|+|++++..... ..++|+.+- ....|+++..+
T Consensus 172 ~~iYv~GG~~~~~~~~~~~yd~--~~~~W~~~~~~ 204 (323)
T TIGR03548 172 NELYVFGGGSNIAYTDGYKYSP--KKNQWQKVADP 204 (323)
T ss_pred CEEEEEcCCCCccccceEEEec--CCCeeEECCCC
Confidence 999999875432 345666553 14679886544
No 16
>PHA03098 kelch-like protein; Provisional
Probab=98.94 E-value=3.8e-08 Score=97.98 Aligned_cols=235 Identities=10% Similarity=-0.014 Sum_probs=136.9
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCccc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
.+.-+|+.+++|..++..+ .. .....+ ..+ -+|+.++...........+..|+..+++|..++.+|.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~--~~~-----~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-- 331 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIH--YV--YCFGSV--VLN-----NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY-- 331 (534)
T ss_pred eeeecchhhhhcccccCcc--cc--ccceEE--EEC-----CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--
Confidence 3556788999999887655 11 111111 111 2455554332222223468999999999999887761
Q ss_pred ccccccccccccccCceeEeCceEEEeccCC--CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEE
Q 046902 191 RDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVF 267 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~--~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~ 267 (393)
.+.....+.++|.+|.+++.. .....+..||+.+.+|+.++ +|.... ....+..+|+++++
T Consensus 332 ----------~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~------~~~~~~~~~~iYv~ 395 (534)
T PHA03098 332 ----------PRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY------NPCVVNVNNLIYVI 395 (534)
T ss_pred ----------ccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc------cceEEEECCEEEEE
Confidence 223455678999999998752 12356899999999999874 554332 33567889999999
Q ss_pred EEcCCC---eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---------cEEEEEECCC
Q 046902 268 RFYNLV---YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---------EKLVWFDLET 335 (393)
Q Consensus 268 ~~~~~~---~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------~~l~~yd~~t 335 (393)
++.... .-.+++.+- ..+.|+....++... . .....+ -+ +.|++.... ..+..||+++
T Consensus 396 GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~p~~r----~--~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 396 GGISKNDELLKTVECFSL--NTNKWSKGSPLPISH----Y--GGCAIY-HD-GKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCcCCCCcccceEEEEeC--CCCeeeecCCCCccc----c--CceEEE-EC-CEEEEECCccCCCCCcccceEEEecCCC
Confidence 874221 124555553 146798865444321 1 111222 23 456554321 2489999999
Q ss_pred CcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhh
Q 046902 336 NSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKR 388 (393)
Q Consensus 336 ~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
++|+.+.- ...+ ...++.+-..+.-+..... ....+..+.-+.+..+|.
T Consensus 466 ~~W~~~~~--~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 466 NKWTELSS--LNFPRINASLCIFNNKIYVVGGDKY--EYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CceeeCCC--CCcccccceEEEECCEEEEEcCCcC--CcccceeEEEeCCCCEEE
Confidence 99998832 2222 3345555555555433221 122345555555555554
No 17
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.93 E-value=1.6e-10 Score=74.25 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=36.6
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIK 43 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 43 (393)
|..||+|++.+||++||++++.++++|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998885543
No 18
>PLN02153 epithiospecifier protein
Probab=98.89 E-value=5.6e-07 Score=84.29 Aligned_cols=178 Identities=11% Similarity=0.111 Sum_probs=105.0
Q ss_pred eeeeeceEEEeeC------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCC-----
Q 046902 96 LGSCNGLIALCNS------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGND----- 164 (393)
Q Consensus 96 ~~s~~GLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~----- 164 (393)
+++.+|.|.+... ...++++||.|++|..++++.. ...+.....++.... .+ |++.++......
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~~~p~~R~~~~~~~~--~~--~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDE-EGGPEARTFHSMASD--EN--HVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCC-CCCCCCceeeEEEEE--CC--EEEEECCccCCCccCCC
Confidence 3445555544431 2368999999999999986521 000111112222211 11 455554322111
Q ss_pred CCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC----------CCCcEEEEEECCC
Q 046902 165 GDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS----------STRSVIVAFDLVA 234 (393)
Q Consensus 165 ~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~----------~~~~~il~fD~~~ 234 (393)
.....+++|+..+++|+.++.+... ...+.....+.++|++|.+.+.. .....+.+||+.+
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~---------~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~ 226 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGEN---------FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPAS 226 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCC---------CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCC
Confidence 0124689999999999988654200 01122334577999999886431 1124699999999
Q ss_pred ceeeeec----CCCcccccCCceeEEEEEeCCeEEEEEEcCC---------C--eEEEEEEeecCCCCCeEEEEEe
Q 046902 235 EEFYQLP----LPDSVNVSYANVHVDVGSLEGCLCVFRFYNL---------V--YVDMWMMKEHAVKESWTKLFSV 295 (393)
Q Consensus 235 e~~~~i~----lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---------~--~~~iW~l~~~~~~~~W~~~~~i 295 (393)
.+|+.++ +|.... ....+..+++|++++.... . .-++|+++-. ...|+++...
T Consensus 227 ~~W~~~~~~g~~P~~r~------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~ 294 (341)
T PLN02153 227 GKWTEVETTGAKPSARS------VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGEC 294 (341)
T ss_pred CcEEeccccCCCCCCcc------eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCC
Confidence 9999975 343321 3456788999999987421 1 1278998852 4689987643
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=98.82 E-value=2.2e-07 Score=90.86 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=116.8
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeee-cCCCc
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQL-PLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i-~lP~~ 245 (393)
...++.|++.+++|..++.++. .+.....+.++|.+|.+++... ...+..||+.+++|..+ ++|..
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~------------~r~~~~~v~~~~~iYviGG~~~-~~sve~ydp~~n~W~~~~~l~~~ 352 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNS------------PRLYASGVPANNKLYVVGGLPN-PTSVERWFHGDAAWVNMPSLLKP 352 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCc------------hhhcceEEEECCEEEEECCcCC-CCceEEEECCCCeEEECCCCCCC
Confidence 3568899999999999988772 1223456789999999987522 25689999999999987 45543
Q ss_pred ccccCCceeEEEEEeCCeEEEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE
Q 046902 246 VNVSYANVHVDVGSLEGCLCVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV 323 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~ 323 (393)
.. ....++++|+||++++.... .++.+ + .. .+.|+.+..++.+. ....++.-+ +.||+..
T Consensus 353 r~------~~~~~~~~g~IYviGG~~~~~~~ve~y--d-p~-~~~W~~~~~m~~~r-------~~~~~~~~~-~~IYv~G 414 (480)
T PHA02790 353 RC------NPAVASINNVIYVIGGHSETDTTTEYL--L-PN-HDQWQFGPSTYYPH-------YKSCALVFG-RRLFLVG 414 (480)
T ss_pred Cc------ccEEEEECCEEEEecCcCCCCccEEEE--e-CC-CCEEEeCCCCCCcc-------ccceEEEEC-CEEEEEC
Confidence 32 34778999999999875432 23332 2 11 46798865544322 111222223 5677764
Q ss_pred cCcEEEEEECCCCcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHh
Q 046902 324 RREKLVWFDLETNSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEK 387 (393)
Q Consensus 324 ~~~~l~~yd~~t~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
. ...+||+++++|+.+.- ...+ ...+..+-..+.-+.+... +..++..|.-+.+..+|
T Consensus 415 G--~~e~ydp~~~~W~~~~~--m~~~r~~~~~~v~~~~IYviGG~~~--~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 R--NAEFYCESSNTWTLIDD--PIYPRDNPELIIVDNKLLLIGGFYR--GSYIDTIEVYNNRTYSW 474 (480)
T ss_pred C--ceEEecCCCCcEeEcCC--CCCCccccEEEEECCEEEEECCcCC--CcccceEEEEECCCCeE
Confidence 2 37789999999998832 1222 4566667667766654332 12234455555555544
No 20
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.75 E-value=1.2e-09 Score=70.69 Aligned_cols=44 Identities=34% Similarity=0.385 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLH 45 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~ 45 (393)
+.+||+|++.+||.+||.+++++++.|||+|++++.++.+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 35799999999999999999999999999999999999887654
No 21
>PLN02193 nitrile-specifier protein
Probab=98.72 E-value=6e-06 Score=80.62 Aligned_cols=176 Identities=13% Similarity=0.132 Sum_probs=106.4
Q ss_pred eeeeeceEEEeeC------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccE
Q 046902 96 LGSCNGLIALCNS------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVE 169 (393)
Q Consensus 96 ~~s~~GLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 169 (393)
++..++.|.+... ...++++||.|++|..++++. .. +.....+++... +=+++.+..... ......
T Consensus 224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~--~~-P~~R~~h~~~~~----~~~iYv~GG~~~-~~~~~~ 295 (470)
T PLN02193 224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVE--EG-PTPRSFHSMAAD----EENVYVFGGVSA-TARLKT 295 (470)
T ss_pred EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCC--CC-CCCccceEEEEE----CCEEEEECCCCC-CCCcce
Confidence 3445665554431 246899999999999998763 11 111111122111 124555543221 113356
Q ss_pred EEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC-CCCcEEEEEECCCceeeeecC----CC
Q 046902 170 VEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS-STRSVIVAFDLVAEEFYQLPL----PD 244 (393)
Q Consensus 170 ~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-~~~~~il~fD~~~e~~~~i~l----P~ 244 (393)
+++|+..+++|+.++.... . ...+.....+.++|++|.+.... .....+.+||+.+.+|+.++. |.
T Consensus 296 ~~~yd~~t~~W~~~~~~~~-~--------~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~ 366 (470)
T PLN02193 296 LDSYNIVDKKWFHCSTPGD-S--------FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPS 366 (470)
T ss_pred EEEEECCCCEEEeCCCCCC-C--------CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCC
Confidence 8999999999998754210 0 01123344567899999987642 123579999999999998752 32
Q ss_pred cccccCCceeEEEEEeCCeEEEEEEcCC---------Ce--EEEEEEeecCCCCCeEEEEEee
Q 046902 245 SVNVSYANVHVDVGSLEGCLCVFRFYNL---------VY--VDMWMMKEHAVKESWTKLFSVQ 296 (393)
Q Consensus 245 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~---------~~--~~iW~l~~~~~~~~W~~~~~i~ 296 (393)
.. .....+..+++|++++.... .. -++|.++-. ...|+++..+.
T Consensus 367 ~R------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~ 421 (470)
T PLN02193 367 ER------SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFG 421 (470)
T ss_pred Cc------ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEcccCC
Confidence 21 13456788999999986421 11 268999852 46799876554
No 22
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.64 E-value=5e-09 Score=65.18 Aligned_cols=39 Identities=46% Similarity=0.668 Sum_probs=36.7
Q ss_pred CcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHH
Q 046902 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIK 43 (393)
Q Consensus 5 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 43 (393)
||+|++.+||.+||++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988753
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.61 E-value=2.5e-05 Score=74.20 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=88.3
Q ss_pred cEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC---CC--CcEEEEEECCCceeeeec-
Q 046902 168 VEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---ST--RSVIVAFDLVAEEFYQLP- 241 (393)
Q Consensus 168 ~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~--~~~il~fD~~~e~~~~i~- 241 (393)
..+++|+..++.|+.++.+| .. .......+.++++||.+++.. .. ......||+.+.+|..+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p----------~~-~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESP----------FL-GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred ceEEEEECCCCeeeECCcCC----------CC-CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 46999999999999988776 11 112334567899999998641 11 123456678899999874
Q ss_pred CCCcccc-cCCc-eeEEEEEeCCeEEEEEEcCCC---------e-------EEEEEEeecCC-CCCeEEEEEeeCCCCCC
Q 046902 242 LPDSVNV-SYAN-VHVDVGSLEGCLCVFRFYNLV---------Y-------VDMWMMKEHAV-KESWTKLFSVQEPTPTR 302 (393)
Q Consensus 242 lP~~~~~-~~~~-~~~~l~~~~G~L~~~~~~~~~---------~-------~~iW~l~~~~~-~~~W~~~~~i~~~~~~~ 302 (393)
+|..... .... .....+..+|+|++++..... . -.+|..+-|.. ...|++...++.+.
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--- 334 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--- 334 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc---
Confidence 5543210 0011 122356789999999864310 0 12343332321 46798876554321
Q ss_pred CcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEEE
Q 046902 303 SFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLRT 340 (393)
Q Consensus 303 ~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~~ 340 (393)
... .++.-++.++++.... ..+..|+++++++..
T Consensus 335 ---~~~-~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 335 ---AYG-VSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ---cce-EEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 111 2333344444443221 258888888877653
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.46 E-value=4e-05 Score=71.27 Aligned_cols=140 Identities=11% Similarity=0.022 Sum_probs=84.7
Q ss_pred ceEEEEeccccce----eccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc
Q 046902 110 QELALFNPSTRKL----KTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN 185 (393)
Q Consensus 110 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~ 185 (393)
..++.+|+.+++| ..+|+++ .... .... ..++ =+|..++.... ......+++|++.+++|+.++.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp--~~~~-~~~~--~~~~-----~~iYv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~ 156 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLP--FTFE-NGSA--CYKD-----GTLYVGGGNRN-GKPSNKSYLFNLETQEWFELPD 156 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCC--cCcc-CceE--EEEC-----CEEEEEeCcCC-CccCceEEEEcCCCCCeeECCC
Confidence 4688899999987 6778776 2211 1111 1122 15555543211 1134579999999999999987
Q ss_pred cCcccccccccccccccccCceeEeCceEEEeccCCC-CCcEEEEEECCCceeeeecC-CCcccccCCceeEEEEEeCCe
Q 046902 186 LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS-TRSVIVAFDLVAEEFYQLPL-PDSVNVSYANVHVDVGSLEGC 263 (393)
Q Consensus 186 ~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-~~~~il~fD~~~e~~~~i~l-P~~~~~~~~~~~~~l~~~~G~ 263 (393)
+|. . .+.....+.++|.||.+++... ....+.+||+.+++|+.++. +.............++..+|+
T Consensus 157 ~p~----------~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 157 FPG----------E-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred CCC----------C-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 662 1 1223345679999999986521 12347899999999998753 211100000112345566899
Q ss_pred EEEEEEcC
Q 046902 264 LCVFRFYN 271 (393)
Q Consensus 264 L~~~~~~~ 271 (393)
|++++...
T Consensus 226 iyv~GG~~ 233 (323)
T TIGR03548 226 LLCIGGFN 233 (323)
T ss_pred EEEECCcC
Confidence 99998653
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.34 E-value=9.9e-05 Score=69.30 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=85.3
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe--CCCCeEEccccC
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL--KTNSWRRISNLP 187 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss--~t~~W~~~~~~p 187 (393)
..+.++||.|++|..+++++ .........+ .++ -||..++...........+++|+. +++.|..+..+|
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p--~~~r~~~~~~--~~~-----~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENP--FLGTAGSAIV--HKG-----NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred ceEEEEECCCCceeECccCC--CCcCCCceEE--EEC-----CEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 46889999999999999876 2111111111 122 255555543221112234556665 667999998776
Q ss_pred cccccccccccccccccCceeEeCceEEEeccCCC-------------------CCcEEEEEECCCceeeee-cCCCccc
Q 046902 188 RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS-------------------TRSVIVAFDLVAEEFYQL-PLPDSVN 247 (393)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-------------------~~~~il~fD~~~e~~~~i-~lP~~~~ 247 (393)
..... ..........+.++|.||.+++... ....+.+||+.+++|+.+ ++|....
T Consensus 239 ~~r~~-----~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~ 313 (346)
T TIGR03547 239 PPKSS-----SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA 313 (346)
T ss_pred CCCCC-----ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce
Confidence 21000 0000011225678999999986421 012578999999999887 4665432
Q ss_pred ccCCceeEEEEEeCCeEEEEEEcC
Q 046902 248 VSYANVHVDVGSLEGCLCVFRFYN 271 (393)
Q Consensus 248 ~~~~~~~~~l~~~~G~L~~~~~~~ 271 (393)
....+.++|+|++++...
T Consensus 314 ------~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 314 ------YGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred ------eeEEEEcCCEEEEEeccC
Confidence 345678899999999754
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.26 E-value=0.0001 Score=63.63 Aligned_cols=222 Identities=13% Similarity=0.164 Sum_probs=127.5
Q ss_pred eeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCC-----CceEEE---EeeeCCCCCeEEEEEEEeecCCCCcc
Q 046902 97 GSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPS-----AFTFYG---FGQDKINDDYKLVRVLHFKGNDGDDV 168 (393)
Q Consensus 97 ~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~-----~~~~~~---~g~d~~~~~ykVv~~~~~~~~~~~~~ 168 (393)
+-|.|-..=....-++.|.|..+-+|..+|+--....... .+..+| ..|+ =|+..-+....++....
T Consensus 31 GYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-----d~~yvWGGRND~egaCN 105 (392)
T KOG4693|consen 31 GYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-----DKAYVWGGRNDDEGACN 105 (392)
T ss_pred CcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-----ceEEEEcCccCcccccc
Confidence 3455554433345579999999999999998320011111 111111 1121 13433333333334556
Q ss_pred EEEEEEeCCCCeEEcc---ccCcccccccccccccccccCceeEeCceEEEeccC----CCCCcEEEEEECCCceeeeec
Q 046902 169 EVEVYSLKTNSWRRIS---NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK----SSTRSVIVAFDLVAEEFYQLP 241 (393)
Q Consensus 169 ~~~Vyss~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~----~~~~~~il~fD~~~e~~~~i~ 241 (393)
...-|+.+++.|...+ .+| ..+...++++++..+|-+++. .....-+.+||+.+++|+.+.
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vP------------gaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~ 173 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVP------------GARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMH 173 (392)
T ss_pred eeeeeccccccccccceeeecC------------CccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehh
Confidence 7788999999998764 234 234566778899999998764 223356999999999999974
Q ss_pred ---CCCcccccCCceeEEEEEeCCeEEEEEEcCCC-----------eEEEEEEeecCCCCCeEEEEEeeCCCCCCCccee
Q 046902 242 ---LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLV-----------YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFL 307 (393)
Q Consensus 242 ---lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~-----------~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 307 (393)
.|+.-. .++ ...+++|..++++...+. .-.|=.|+- ..+.|..-..-.... .+. +-.
T Consensus 174 Tkg~PprwR----DFH-~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P-~GR-RSH 244 (392)
T KOG4693|consen 174 TKGDPPRWR----DFH-TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKP-GGR-RSH 244 (392)
T ss_pred ccCCCchhh----hhh-hhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCC-Ccc-ccc
Confidence 455432 222 456678999998764321 223334442 145687642221110 000 011
Q ss_pred eEEEEEeCCcEEEEEEcC-------cEEEEEECCCCcEEEEEEecCCC
Q 046902 308 RPLGYSRNGVKLLLEVRR-------EKLVWFDLETNSLRTVKIDTHGL 348 (393)
Q Consensus 308 ~~~~~~~~g~~i~l~~~~-------~~l~~yd~~t~~~~~v~~~~~~~ 348 (393)
. .+.-||...++.... +.|+.||++|..|..|.. .|.
T Consensus 245 S--~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~--~Gk 288 (392)
T KOG4693|consen 245 S--TFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV--RGK 288 (392)
T ss_pred c--eEEEcceEEEecccchhhhhhhcceeecccccchheeeec--cCC
Confidence 1 222266555554321 259999999999999987 553
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.06 E-value=0.0003 Score=64.44 Aligned_cols=210 Identities=18% Similarity=0.155 Sum_probs=120.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEE-EeecCC----CCccEEEEEEeCCCCeEEcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVL-HFKGND----GDDVEVEVYSLKTNSWRRIS 184 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~----~~~~~~~Vyss~t~~W~~~~ 184 (393)
..+|++|--+.+|+.+-.+. ... ..+.+.+...|+. .+..++ ...... +.-..+++|++.++.|..+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn--~P~--pRsshq~va~~s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPN--APP--PRSSHQAVAVPSN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccCC--CcC--CCccceeEEeccC---eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 47999999999999875543 111 1222333334433 122222 111111 12345789999999999986
Q ss_pred c--cCcccccccccccccccccCceeEeCceEEEeccC-CCC-----CcEEEEEECCCceeeeecCCCcccccCCceeEE
Q 046902 185 N--LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK-SST-----RSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVD 256 (393)
Q Consensus 185 ~--~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~-~~~-----~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~ 256 (393)
. .| ..++.++.|.....|.-+++- ... -+-+.+||+.+=+|+.+..+-. .. .....++
T Consensus 171 ~~g~P------------S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~P-tpRSGcq 236 (521)
T KOG1230|consen 171 FGGGP------------SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-GP-TPRSGCQ 236 (521)
T ss_pred cCCCC------------CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-CC-CCCCcce
Confidence 2 33 223344445544444443321 111 1358999999999999876432 11 1112235
Q ss_pred EEEe-CCeEEEEEEcC-----------CCeEEEEEEeecC---CCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE
Q 046902 257 VGSL-EGCLCVFRFYN-----------LVYVDMWMMKEHA---VKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 257 l~~~-~G~L~~~~~~~-----------~~~~~iW~l~~~~---~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l 321 (393)
+.+. +|.++|.+++. ...-++|.|+... ++-.|+++..+.... .++ ..--+++++++..+++
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP-spR--sgfsv~va~n~kal~F 313 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP-SPR--SGFSVAVAKNHKALFF 313 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC-CCC--CceeEEEecCCceEEe
Confidence 5666 89998887642 1256899997432 134577776665532 112 2234667777777777
Q ss_pred EEc--------------CcEEEEEECCCCcEEEEEE
Q 046902 322 EVR--------------REKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 322 ~~~--------------~~~l~~yd~~t~~~~~v~~ 343 (393)
..- .+.|+.||+..++|..-.+
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred cceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 531 0249999999999886654
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.93 E-value=0.00027 Score=63.09 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=39.2
Q ss_pred CCCCc----HHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHH
Q 046902 2 SKKIP----LDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLH 45 (393)
Q Consensus 2 ~~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~ 45 (393)
+..|| +++.+.||+.|...+|+.|..|||+|+++++++..-+..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 45789 999999999999999999999999999999998764443
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.52 E-value=0.021 Score=55.97 Aligned_cols=207 Identities=16% Similarity=0.071 Sum_probs=119.9
Q ss_pred eEEEEeccccceeccCCCCCCCCCC-CCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFP-SAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
+++|+|--+..|........ ...+ .....++++ =+++.++...........++.|+..|+.|+.+.....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~-~p~~r~g~~~~~~~-------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~- 159 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGD-EPSPRYGHSLSAVG-------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD- 159 (482)
T ss_pred eeEEeecCCcccccccccCC-CCCcccceeEEEEC-------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC-
Confidence 59999999988887654330 1111 122222222 2444444322211134578999999999998753220
Q ss_pred cccccccccccccccCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
....+..+..+.++.++|.+++.. .....+.+||+++.+|..+......- .......+++.++++++
T Consensus 160 --------~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P--~pR~gH~~~~~~~~~~v 229 (482)
T KOG0379|consen 160 --------PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP--SPRYGHAMVVVGNKLLV 229 (482)
T ss_pred --------CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC--CCCCCceEEEECCeEEE
Confidence 012234566677888888887652 23468999999999999976432221 12223477888999999
Q ss_pred EEEcC-CC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE-EEc-------CcEEEEEECCC
Q 046902 267 FRFYN-LV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL-EVR-------REKLVWFDLET 335 (393)
Q Consensus 267 ~~~~~-~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l-~~~-------~~~l~~yd~~t 335 (393)
+.... .. -=++|.|+-. ...|.++....- .+..+......+. |+.+++ ... -..++.||+++
T Consensus 230 ~gG~~~~~~~l~D~~~ldl~--~~~W~~~~~~g~---~p~~R~~h~~~~~--~~~~~l~gG~~~~~~~~l~~~~~l~~~~ 302 (482)
T KOG0379|consen 230 FGGGDDGDVYLNDVHILDLS--TWEWKLLPTGGD---LPSPRSGHSLTVS--GDHLLLFGGGTDPKQEPLGDLYGLDLET 302 (482)
T ss_pred EeccccCCceecceEeeecc--cceeeeccccCC---CCCCcceeeeEEE--CCEEEEEcCCcccccccccccccccccc
Confidence 88654 22 3478999852 256764332221 1111122233333 334444 321 12488899999
Q ss_pred CcEEEEEE
Q 046902 336 NSLRTVKI 343 (393)
Q Consensus 336 ~~~~~v~~ 343 (393)
+.|..+.-
T Consensus 303 ~~w~~~~~ 310 (482)
T KOG0379|consen 303 LVWSKVES 310 (482)
T ss_pred cceeeeec
Confidence 99998854
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.43 E-value=0.0089 Score=58.57 Aligned_cols=180 Identities=18% Similarity=0.102 Sum_probs=106.9
Q ss_pred eeeeceEEEeeCC------ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEE
Q 046902 97 GSCNGLIALCNSV------QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEV 170 (393)
Q Consensus 97 ~s~~GLl~~~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 170 (393)
+..+.|+++.... ..+..+|+.|++|..+.+.. . .+.....+.+..+. =||+.++...........+
T Consensus 120 ~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~--~-~P~~r~~Hs~~~~g----~~l~vfGG~~~~~~~~ndl 192 (482)
T KOG0379|consen 120 AVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTG--D-PPPPRAGHSATVVG----TKLVVFGGIGGTGDSLNDL 192 (482)
T ss_pred EECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcC--C-CCCCcccceEEEEC----CEEEEECCccCcccceeee
Confidence 3335566665533 27999999999999987655 1 11111122222111 1555554432222245679
Q ss_pred EEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC-C--CCcEEEEEECCCceeeeecCCCccc
Q 046902 171 EVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS-S--TRSVIVAFDLVAEEFYQLPLPDSVN 247 (393)
Q Consensus 171 ~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-~--~~~~il~fD~~~e~~~~i~lP~~~~ 247 (393)
+||+..+.+|..+..... ....+..+..+.+++.++-+.+.. . .-.-+..||+.+.+|..+. +....
T Consensus 193 ~i~d~~~~~W~~~~~~g~---------~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~ 262 (482)
T KOG0379|consen 193 HIYDLETSTWSELDTQGE---------APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDL 262 (482)
T ss_pred eeeccccccceecccCCC---------CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCC
Confidence 999999999999863221 012233455567777777766542 1 2246999999999998432 11111
Q ss_pred ccCCceeEEEEEeCCeEEEEEEcCC----CeEEEEEEeecCCCCCeEEEEEee
Q 046902 248 VSYANVHVDVGSLEGCLCVFRFYNL----VYVDMWMMKEHAVKESWTKLFSVQ 296 (393)
Q Consensus 248 ~~~~~~~~~l~~~~G~L~~~~~~~~----~~~~iW~l~~~~~~~~W~~~~~i~ 296 (393)
. .......++..+..+++++.... .--++|.|+.. ...|.++....
T Consensus 263 p-~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 263 P-SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred C-CCcceeeeEEECCEEEEEcCCccccccccccccccccc--ccceeeeeccc
Confidence 0 12234466678888888886644 24467888753 46799987776
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.42 E-value=0.0013 Score=56.84 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=93.7
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc--cCc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN--LPR 188 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~--~p~ 188 (393)
-++-++|-|.+|.+---............++.+| +...|+.-.. ...+.....+++++..|-.|+.+.. .|+
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGye-~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGYE-EDAQRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred eeeeeccccccccccceeeecCCccCCceeeEEC-----cEEEEecChH-HHHHhhhccceeEeccceeeeehhccCCCc
Confidence 4788899999998622110000011123333333 2222222111 0011134567888999999999853 231
Q ss_pred ccccccccccccccccCceeEeCceEEEeccCC---------C--CCcEEEEEECCCceeeeec----CCCcccccCCce
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---------S--TRSVIVAFDLVAEEFYQLP----LPDSVNVSYANV 253 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---------~--~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~ 253 (393)
.-+....++.++|.+|-+++.. . -...|++||+.++.|...+ +|.+. .
T Consensus 180 -----------rwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GR------R 242 (392)
T KOG4693|consen 180 -----------RWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGR------R 242 (392)
T ss_pred -----------hhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcc------c
Confidence 1124566788899999998651 1 1257999999999998752 23222 1
Q ss_pred eEEEEEeCCeEEEEEEcCCC----eEEEEEEeecCCCCCeEEEE
Q 046902 254 HVDVGSLEGCLCVFRFYNLV----YVDMWMMKEHAVKESWTKLF 293 (393)
Q Consensus 254 ~~~l~~~~G~L~~~~~~~~~----~~~iW~l~~~~~~~~W~~~~ 293 (393)
....-+.+|++++++.+... --++|..+- ....|.++.
T Consensus 243 SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~ 284 (392)
T KOG4693|consen 243 SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVIS 284 (392)
T ss_pred ccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeee
Confidence 23667899999999876431 347888874 246798764
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=5e-05 Score=66.92 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQD 40 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~ 40 (393)
+.+|||||++.||+.||.|+|++...|||+|+++.++.+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 468999999999999999999999999999999988765
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.93 E-value=0.048 Score=50.46 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=91.7
Q ss_pred EEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeC-ceEEEeccC--CCC------CcEEEEEECCCceeee
Q 046902 169 EVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAG-GALHWVSPK--SST------RSVIVAFDLVAEEFYQ 239 (393)
Q Consensus 169 ~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~-G~lyw~~~~--~~~------~~~il~fD~~~e~~~~ 239 (393)
.+.+|+.+++.|+.+.... ....+.....|.+- |.+|.++++ +.+ .--+-.||+.+.+|..
T Consensus 99 dLy~Yn~k~~eWkk~~spn----------~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPN----------APPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeEEeccccceeEeccCC----------CcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 4678999999999886422 11223344455544 766655554 111 1237899999999999
Q ss_pred ecCCCcccccCCceeEEEEEeCCeEEEEEEcCC-C-----eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEE
Q 046902 240 LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNL-V-----YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYS 313 (393)
Q Consensus 240 i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~-----~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~ 313 (393)
+.++.+.. ......++....+|.++++..+ + --+||..+-+ ...|.++.. +- ..+..+-.+-+.+.
T Consensus 169 l~~~g~PS---~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep-sg--a~PtpRSGcq~~vt 240 (521)
T KOG1230|consen 169 LEFGGGPS---PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP-SG--AGPTPRSGCQFSVT 240 (521)
T ss_pred eccCCCCC---CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC-CC--CCCCCCCcceEEec
Confidence 99887553 2223478888999999875422 1 2367887642 467999765 21 11111122345667
Q ss_pred eCCcEEEEEEcC--------------cEEEEEECCC
Q 046902 314 RNGVKLLLEVRR--------------EKLVWFDLET 335 (393)
Q Consensus 314 ~~g~~i~l~~~~--------------~~l~~yd~~t 335 (393)
++|++|+..... ..++..++++
T Consensus 241 pqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 241 PQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred CCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 777777765321 1489999988
No 34
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.53 E-value=0.57 Score=46.51 Aligned_cols=236 Identities=17% Similarity=0.127 Sum_probs=117.0
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHHHhcc-cCCCC--ceEEEeecC-----C-CeeeecCC
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHS-ITTRS--NRRLILKGA-----H-DLYALDFD 72 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~-~~~~~--~~~~~~~~~-----~-~~~~~~~~ 72 (393)
+..||.++...||..|+.++++++++||+.|+.++.+........... ....+ ....-.... + .++.-.+
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~- 186 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRF- 186 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhh-
Confidence 567999999999999999999999999999999999877655332222 11100 000000000 0 0010000
Q ss_pred CCCCCCcccccC----CCCCC--CCccEEeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeee
Q 046902 73 TLTLGTGVQPHH----HPLNI--GSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQD 146 (393)
Q Consensus 73 ~~~~~~~~~~~~----~p~~~--~~~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d 146 (393)
..... +.... ..+.. ...+....-..|.+........+.+|+..+++...-+... . ....-++.+.
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G----H--~g~V~~l~~~ 258 (537)
T KOG0274|consen 187 RLSKN--WRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVG----H--FGGVWGLAFP 258 (537)
T ss_pred hcccc--ccccccccceeecccCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccC----C--CCCceeEEEe
Confidence 00000 00000 00000 1111111122444444434455679999999876653322 1 2223344444
Q ss_pred CCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcE
Q 046902 147 KINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSV 226 (393)
Q Consensus 147 ~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~ 226 (393)
. .+.+++-.. ....+.|.+..+|.=..+- . ++. .....+... ..+-.+ +...+.
T Consensus 259 ~--~~~~lvsgS-------~D~t~rvWd~~sg~C~~~l--~----------gh~--stv~~~~~~-~~~~~s--gs~D~t 312 (537)
T KOG0274|consen 259 S--GGDKLVSGS-------TDKTERVWDCSTGECTHSL--Q----------GHT--SSVRCLTID-PFLLVS--GSRDNT 312 (537)
T ss_pred c--CCCEEEEEe-------cCCcEEeEecCCCcEEEEe--c----------CCC--ceEEEEEcc-CceEee--ccCCce
Confidence 3 445655443 2345666666665432221 0 000 000111121 222222 224578
Q ss_pred EEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEe
Q 046902 227 IVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMK 281 (393)
Q Consensus 227 il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~ 281 (393)
|.++|+.+...-.+. .+.. ...-+.+++.+.+.+..+. .+.||-..
T Consensus 313 VkVW~v~n~~~l~l~~~h~~--------~V~~v~~~~~~lvsgs~d~-~v~VW~~~ 359 (537)
T KOG0274|consen 313 VKVWDVTNGACLNLLRGHTG--------PVNCVQLDEPLLVSGSYDG-TVKVWDPR 359 (537)
T ss_pred EEEEeccCcceEEEeccccc--------cEEEEEecCCEEEEEecCc-eEEEEEhh
Confidence 999999977765543 2222 2234555677777776666 89999765
No 35
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.34 E-value=0.001 Score=59.09 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHhccCC-----ccceeeeeecccchhhhcCChHHHHHHHhc
Q 046902 2 SKKIPLDIITGIFCRQP-----VKSLLRFRCVSKTCCSLIDSQDFIKLHLNH 48 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP-----~~sl~r~r~VcK~W~~li~s~~F~~~~~~~ 48 (393)
|..||+|++.+||.++= ..+|.++.+|||.|+-...+|+|-+..+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K 158 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK 158 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence 46799999999999864 489999999999999999999997766543
No 36
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.16 E-value=0.85 Score=40.31 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=108.0
Q ss_pred eeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
..+|-|++.+ ....++.++|.+++...+..+. ..++.++...+. ++... .....+++..
T Consensus 9 ~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----------~~G~~~~~~~g~--l~v~~--------~~~~~~~d~~ 68 (246)
T PF08450_consen 9 PRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----------PNGMAFDRPDGR--LYVAD--------SGGIAVVDPD 68 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----------EEEEEEECTTSE--EEEEE--------TTCEEEEETT
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----------CceEEEEccCCE--EEEEE--------cCceEEEecC
Confidence 3366666666 4568999999999876544332 356666633332 22222 2345667999
Q ss_pred CCCeEEccccCcccccccccccccccccCceeEeCceEEEeccC---CCCC--cEEEEEECCCceeeee----cCCCccc
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK---SSTR--SVIVAFDLVAEEFYQL----PLPDSVN 247 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~---~~~~--~~il~fD~~~e~~~~i----~lP~~~~ 247 (393)
++.++.+...+... ........-.+--+|.+|.-... .... ..|..+|.. .+...+ ..|..
T Consensus 69 ~g~~~~~~~~~~~~-------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG-- 138 (246)
T PF08450_consen 69 TGKVTVLADLPDGG-------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG-- 138 (246)
T ss_dssp TTEEEEEEEEETTC-------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE--
T ss_pred CCcEEEEeeccCCC-------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc--
Confidence 99998876542100 01111222234567887776543 1111 579999999 554443 22221
Q ss_pred ccCCceeEEEEEeCCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEe-eCCCCCCCcceeeEEEEEeCCcEEEEE-Ec
Q 046902 248 VSYANVHVDVGSLEGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSV-QEPTPTRSFLFLRPLGYSRNGVKLLLE-VR 324 (393)
Q Consensus 248 ~~~~~~~~~l~~~~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~ 324 (393)
+. ..-+|+ |++...... . ||+++-......+.....+ .+... .....-+++..+|+ |++. ..
T Consensus 139 -------i~-~s~dg~~lyv~ds~~~-~--i~~~~~~~~~~~~~~~~~~~~~~~~---~g~pDG~~vD~~G~-l~va~~~ 203 (246)
T PF08450_consen 139 -------IA-FSPDGKTLYVADSFNG-R--IWRFDLDADGGELSNRRVFIDFPGG---PGYPDGLAVDSDGN-LWVADWG 203 (246)
T ss_dssp -------EE-EETTSSEEEEEETTTT-E--EEEEEEETTTCCEEEEEEEEE-SSS---SCEEEEEEEBTTS--EEEEEET
T ss_pred -------eE-ECCcchheeecccccc-e--eEEEeccccccceeeeeeEEEcCCC---CcCCCcceEcCCCC-EEEEEcC
Confidence 11 223554 566554433 3 6666643322335544333 33221 11234466666776 5555 34
Q ss_pred CcEEEEEECCCCcEEEEEEe
Q 046902 325 REKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 325 ~~~l~~yd~~t~~~~~v~~~ 344 (393)
..++..||++.+.+..|.++
T Consensus 204 ~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 204 GGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp TTEEEEEETTSCEEEEEE-S
T ss_pred CCEEEEECCCccEEEEEcCC
Confidence 56899999998878888773
No 37
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.73 E-value=0.69 Score=41.02 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=80.4
Q ss_pred ccCceeEeCceEEEeccCCCCCcEEEEEECCCceee-eecCCCccccc------CCceeEEEEEeCCeEEEEEEcCCC--
Q 046902 203 RKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVNVS------YANVHVDVGSLEGCLCVFRFYNLV-- 273 (393)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~------~~~~~~~l~~~~G~L~~~~~~~~~-- 273 (393)
.....|+.||.+|+.... ...|+.||+.+++-. ...+|...... .....+.+++.+..|.++......
T Consensus 70 ~GtG~vVYngslYY~~~~---s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYN---SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred ccCCeEEECCcEEEEecC---CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 345568899999999653 578999999999988 77888765320 112246889999999999865432
Q ss_pred eEEEEEEeecC--CCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-c----CcEEEEEECCCCcEEEEEEe
Q 046902 274 YVDMWMMKEHA--VKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-R----REKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 274 ~~~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~----~~~l~~yd~~t~~~~~v~~~ 344 (393)
.+.|-.|+... ..+.|..-+ . . ... .. +|.-.| +++... . ..--+.||+.+++-+.+.|+
T Consensus 147 ~ivvskld~~tL~v~~tw~T~~--~--k--~~~--~n--aFmvCG-vLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 147 NIVVSKLDPETLSVEQTWNTSY--P--K--RSA--GN--AFMVCG-VLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred cEEEEeeCcccCceEEEEEecc--C--c--hhh--cc--eeeEee-EEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 58888887532 234565321 1 1 010 11 111123 344332 1 22467899999988877764
No 38
>PF13964 Kelch_6: Kelch motif
Probab=95.55 E-value=0.046 Score=35.05 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=31.9
Q ss_pred cCceeEeCceEEEeccCCC---CCcEEEEEECCCceeeeec-CC
Q 046902 204 KGYGVLAGGALHWVSPKSS---TRSVIVAFDLVAEEFYQLP-LP 243 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~---~~~~il~fD~~~e~~~~i~-lP 243 (393)
....|.++|.||.+++... ....+..||+++.+|+.++ +|
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 3456889999999987632 2468999999999999984 44
No 39
>smart00284 OLF Olfactomedin-like domains.
Probab=95.52 E-value=0.48 Score=41.87 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=77.6
Q ss_pred ccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccc----c--CCceeEEEEEeCCeEEEEEEcCC--C
Q 046902 203 RKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNV----S--YANVHVDVGSLEGCLCVFRFYNL--V 273 (393)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~----~--~~~~~~~l~~~~G~L~~~~~~~~--~ 273 (393)
.....|+.||.+|+.... ...|+.||+.+++... -.+|..... . .....+.|++.+..|.++..... .
T Consensus 75 ~GtG~VVYngslYY~~~~---s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 75 QGTGVVVYNGSLYFNKFN---SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred ccccEEEECceEEEEecC---CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 355679999999997543 4679999999999864 457753211 0 11224689999999999876532 3
Q ss_pred eEEEEEEeecC--CCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-----cCcEEEEEECCCCcEEEEEEe
Q 046902 274 YVDMWMMKEHA--VKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-----RREKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 274 ~~~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-----~~~~l~~yd~~t~~~~~v~~~ 344 (393)
.|.|-.|+... ..+.|..-+ + .... .. +|.-.| +++... ..+--+.||..|++-+.+.|+
T Consensus 152 ~ivvSkLnp~tL~ve~tW~T~~--~----k~sa--~n--aFmvCG-vLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 152 KIVISKLNPATLTIENTWITTY--N----KRSA--SN--AFMICG-ILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CEEEEeeCcccceEEEEEEcCC--C----cccc--cc--cEEEee-EEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 78888887532 234565421 1 1111 01 111123 344332 123477899999887777664
No 40
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.72 E-value=2.1 Score=40.06 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=84.1
Q ss_pred cEEeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCC-C---cc
Q 046902 93 TEVLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDG-D---DV 168 (393)
Q Consensus 93 ~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~-~---~~ 168 (393)
..+++..+.-|++.+...+..|+++.|+....+|.+.. .......+.+| + +|.++........ . ..
T Consensus 69 ~~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~---pk~~pisv~VG-----~--~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHS---PKRCPISVSVG-----D--KLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred eEEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCC---CCcceEEEEeC-----C--eEEEeeccCccccccCccce
Confidence 34444445555555555779999999999999998761 11112222222 2 3555554322111 1 01
Q ss_pred EEEEE--Ee--------CCCCeEEccccCccccccccccccccc------ccCceeEeCceEEEeccCCCCCcEEEEEEC
Q 046902 169 EVEVY--SL--------KTNSWRRISNLPRFLRDFYDYLYHSLF------RKGYGVLAGGALHWVSPKSSTRSVIVAFDL 232 (393)
Q Consensus 169 ~~~Vy--ss--------~t~~W~~~~~~p~~~~~~~~~~~~~~~------~~~~~v~~~G~lyw~~~~~~~~~~il~fD~ 232 (393)
.+|++ +. .+-+|+.++.+| . .... ....+|+ +|.--|++.... ...-.+||+
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~PP-f---------~~~~~~~~~~i~sYavv-~g~~I~vS~~~~-~~GTysfDt 206 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPPPP-F---------VRDRRYSDYRITSYAVV-DGRTIFVSVNGR-RWGTYSFDT 206 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCCCC-c---------cccCCcccceEEEEEEe-cCCeEEEEecCC-ceEEEEEEc
Confidence 45555 31 123788876644 1 1111 2344555 888888854411 136899999
Q ss_pred CCceeeee---cCCCcccc-cCCceeEEEE--EeC--CeEEEEEEc
Q 046902 233 VAEEFYQL---PLPDSVNV-SYANVHVDVG--SLE--GCLCVFRFY 270 (393)
Q Consensus 233 ~~e~~~~i---~lP~~~~~-~~~~~~~~l~--~~~--G~L~~~~~~ 270 (393)
++.+|+.. .||-.... ........++ ..+ |.||.+...
T Consensus 207 ~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 207 ESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred CCcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEecc
Confidence 99999996 57865432 0111222333 334 477776643
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.23 E-value=0.1 Score=32.75 Aligned_cols=35 Identities=31% Similarity=0.646 Sum_probs=26.6
Q ss_pred EEEEEEEeecCCCCccEEEEEEeCCCCeEEccccC
Q 046902 153 KLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 153 kVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p 187 (393)
+|+.++...........+++|+..+++|+.++.||
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 56666655443446788999999999999987765
No 42
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.00 E-value=1.8 Score=38.19 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=91.9
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCC--ceeeeecCCC
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVA--EEFYQLPLPD 244 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~--e~~~~i~lP~ 244 (393)
.....+||+.+++++.+.... ... .....+.-||.+.-.++.......+-.|+..+ ......+.|.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t-----------d~F-CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT-----------DTF-CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC-----------CCc-ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc
Confidence 345678999999999875322 111 12234557888876666544445688888765 2222333443
Q ss_pred cccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEE-EEEeCCcEEEE
Q 046902 245 SVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPL-GYSRNGVKLLL 321 (393)
Q Consensus 245 ~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~-~~~~~g~~i~l 321 (393)
... ...++.....+ ||++.+++.......+.|=-+.... ...|........ .......|. .+.++|+ ||+
T Consensus 113 ~m~--~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~----~~~~nlYP~~~llPdG~-lFi 185 (243)
T PF07250_consen 113 DMQ--SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD----TLPNNLYPFVHLLPDGN-LFI 185 (243)
T ss_pred ccc--CCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc----cCccccCceEEEcCCCC-EEE
Confidence 332 34455555555 9999999877644555543221110 111211111110 011123454 4457876 555
Q ss_pred EEcCcEEEEEECCCCcE-EEEEEecCCCC-eeeeEEEEeccccCCC
Q 046902 322 EVRREKLVWFDLETNSL-RTVKIDTHGLD-FVDTEICMASLVPLSD 365 (393)
Q Consensus 322 ~~~~~~l~~yd~~t~~~-~~v~~~~~~~~-~~~~~~y~~SL~~~~~ 365 (393)
..+. .-..||.+++++ +.+ ...| ..+.++...|-|-++.
T Consensus 186 ~an~-~s~i~d~~~n~v~~~l----P~lPg~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 186 FANR-GSIIYDYKTNTVVRTL----PDLPGGPRNYPASGSSVMLPL 226 (243)
T ss_pred EEcC-CcEEEeCCCCeEEeeC----CCCCCCceecCCCcceEEecC
Confidence 4443 367789999976 444 3333 3445555655554443
No 43
>smart00612 Kelch Kelch domain.
Probab=93.96 E-value=0.11 Score=32.41 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=18.4
Q ss_pred ccEEEEEEeCCCCeEEccccC
Q 046902 167 DVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p 187 (393)
...+++|++++++|+.++.++
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC
Confidence 457899999999999988777
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.84 E-value=0.15 Score=32.00 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=30.3
Q ss_pred cCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeec
Q 046902 204 KGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLP 241 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~ 241 (393)
....+.++|.+|.+++.. .....+..||+.+.+|..++
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 345688999999998762 23368999999999999873
No 45
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.81 E-value=4.1 Score=35.40 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=97.1
Q ss_pred eeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 99 CNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 99 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
.+|.++.......++.+|+.|++...-...+ .... .. . .. .+-+|+... ....+..++..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--~~~~-~~-~--~~-----~~~~v~v~~-------~~~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP--GPIS-GA-P--VV-----DGGRVYVGT-------SDGSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS--SCGG-SG-E--EE-----ETTEEEEEE-------TTSEEEEEETTTS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc--cccc-ce-e--ee-----ccccccccc-------ceeeeEecccCCc
Confidence 6788877767788999999999854322222 0100 01 0 11 112333332 1126777776665
Q ss_pred --CeEE-ccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce--eee-ecCCCcccc--cC
Q 046902 179 --SWRR-ISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE--FYQ-LPLPDSVNV--SY 250 (393)
Q Consensus 179 --~W~~-~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~--~~~-i~lP~~~~~--~~ 250 (393)
.|+. ....+. ............++.+|..... ..|.++|+.+.+ |.. +..|..... ..
T Consensus 97 ~~~W~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 97 KVLWSIYLTSSPP----------AGVRSSSSPAVDGDRLYVGTSS----GKLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp CEEEEEEE-SSCT----------CSTB--SEEEEETTEEEEEETC----SEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred ceeeeeccccccc----------cccccccCceEecCEEEEEecc----CcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 6883 432220 0111222334446667666533 689999998664 444 333332110 00
Q ss_pred CceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEE
Q 046902 251 ANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVW 330 (393)
Q Consensus 251 ~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ 330 (393)
......+...+|.+++...... .+.+ -++. ....|++. +.- .... ...+++.|++...+..++.
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~g~-~~~~-d~~t--g~~~w~~~--~~~---------~~~~-~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGDGR-VVAV-DLAT--GEKLWSKP--ISG---------IYSL-PSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp TTEEEEEECCTTEEEEECCTSS-EEEE-ETTT--TEEEEEEC--SS----------ECEC-EECCCTEEEEEETTTEEEE
T ss_pred cccccceEEECCEEEEEcCCCe-EEEE-ECCC--CCEEEEec--CCC---------ccCC-ceeeCCEEEEEeCCCEEEE
Confidence 1112344545776666654432 2332 2221 12236321 111 1111 2345678888876678999
Q ss_pred EECCCCcEEE
Q 046902 331 FDLETNSLRT 340 (393)
Q Consensus 331 yd~~t~~~~~ 340 (393)
+|++|++...
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9999998654
No 46
>PF13964 Kelch_6: Kelch motif
Probab=93.51 E-value=0.11 Score=33.13 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=25.2
Q ss_pred EEEEEEEeecCCCCccEEEEEEeCCCCeEEccccC
Q 046902 153 KLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 153 kVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p 187 (393)
+|..++...........+++|+.++++|+.++.+|
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 13 KIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 55555543321224578999999999999998877
No 47
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.77 E-value=5.5 Score=37.29 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=62.6
Q ss_pred cEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCC---------eEEEEEEee----cCCCCCeEE
Q 046902 225 SVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLV---------YVDMWMMKE----HAVKESWTK 291 (393)
Q Consensus 225 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~---------~~~iW~l~~----~~~~~~W~~ 291 (393)
...+.||.++...... |.... .......+..+|+||+....... .+++=.... ......|.-
T Consensus 86 ~~t~vyDt~t~av~~~--P~l~~---pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W 160 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATG--PRLHS---PKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSW 160 (342)
T ss_pred CCeEEEECCCCeEecc--CCCCC---CCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceE
Confidence 4589999988877744 43221 11122334458889998754211 333322221 112344543
Q ss_pred EEEeeCCCCCCCcce----eeEEEEEeCCcEEEEEEcCc--EEEEEECCCCcEEEE
Q 046902 292 LFSVQEPTPTRSFLF----LRPLGYSRNGVKLLLEVRRE--KLVWFDLETNSLRTV 341 (393)
Q Consensus 292 ~~~i~~~~~~~~~~~----~~~~~~~~~g~~i~l~~~~~--~l~~yd~~t~~~~~v 341 (393)
.. ++.+.+...... ..--++. +|..|++...+. .-+.||.++.+|+++
T Consensus 161 ~~-LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 161 RS-LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred Ec-CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 22 443333221111 3344556 788999987654 699999999999998
No 48
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.71 E-value=0.44 Score=30.24 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.7
Q ss_pred cCceeEeCceEEEeccC-----CCCCcEEEEEECCCceeeeecC
Q 046902 204 KGYGVLAGGALHWVSPK-----SSTRSVIVAFDLVAEEFYQLPL 242 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~-----~~~~~~il~fD~~~e~~~~i~l 242 (393)
....+.++|+||.+++. ......+..||+++.+|+.++.
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 45578899999999865 2234679999999999998754
No 49
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=92.42 E-value=1.3 Score=35.03 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=53.2
Q ss_pred cEEEEEECCCc--eeeeecCCCccccc--------CCceeEEEEEeCCeEEEEEEcC---------CCeEEEEEEeec-C
Q 046902 225 SVIVAFDLVAE--EFYQLPLPDSVNVS--------YANVHVDVGSLEGCLCVFRFYN---------LVYVDMWMMKEH-A 284 (393)
Q Consensus 225 ~~il~fD~~~e--~~~~i~lP~~~~~~--------~~~~~~~l~~~~G~L~~~~~~~---------~~~~~iW~l~~~-~ 284 (393)
..|+.+|+-++ .++.++||...... .......+++.+|+|-++.... .-.+.+|+|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 45888998865 67778998765321 0122347888999998887532 227899999974 2
Q ss_pred CCCCeEEEEEeeCCCC
Q 046902 285 VKESWTKLFSVQEPTP 300 (393)
Q Consensus 285 ~~~~W~~~~~i~~~~~ 300 (393)
....|++.+++....+
T Consensus 86 ~~~~W~~d~~v~~~di 101 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSDI 101 (131)
T ss_pred CCCCEEEeEEEEhhhc
Confidence 2578999999987644
No 50
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.73 E-value=11 Score=34.75 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=86.6
Q ss_pred CcEEEEEECCCceeeee---cCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeC-CC
Q 046902 224 RSVIVAFDLVAEEFYQL---PLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQE-PT 299 (393)
Q Consensus 224 ~~~il~fD~~~e~~~~i---~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~-~~ 299 (393)
.+.|..||+........ .++++.. -+.-+..-+|+++++...-..++.+|..+.. .++-+.+.+|.. +.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~G-----PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAG-----PRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPE 238 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCC-----cceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCcc
Confidence 35677777776555442 3444432 1223445589998887766669999998863 244556655552 22
Q ss_pred CCCCcceeeEEEEEeCCcEEEEEEcCc---EEEEEECCCCcEEEEEE-ecCCC-CeeeeEEEEeccccCCCCCCCCCCCC
Q 046902 300 PTRSFLFLRPLGYSRNGVKLLLEVRRE---KLVWFDLETNSLRTVKI-DTHGL-DFVDTEICMASLVPLSDKGGGCGGGI 374 (393)
Q Consensus 300 ~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~yd~~t~~~~~v~~-~~~~~-~~~~~~~y~~SL~~~~~~~~~~~~~~ 374 (393)
.+.......-+-+.++|..++.+.++. .++..|+.+++++.+.+ +.+|. |+...+...++++-. .+|+.+.|
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia---a~q~sd~i 315 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA---ANQKSDNI 315 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE---EccCCCcE
Confidence 222223455677788988777765433 47778999999988854 33454 555555555555432 25555555
Q ss_pred Ccccc
Q 046902 375 NGMKR 379 (393)
Q Consensus 375 ~~~~~ 379 (393)
...++
T Consensus 316 ~vf~~ 320 (346)
T COG2706 316 TVFER 320 (346)
T ss_pred EEEEE
Confidence 44443
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.60 E-value=13 Score=35.48 Aligned_cols=192 Identities=9% Similarity=0.099 Sum_probs=98.5
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
..+|.|.+...+..++..|+.|++.+.--..+ .... ....+ .+ + +|+... ..-.+..++..+
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~-ssP~v---~~----~-~v~v~~-------~~g~l~ald~~t 179 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA--GEAL-SRPVV---SD----G-LVLVHT-------SNGMLQALNESD 179 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCC--Ccee-cCCEE---EC----C-EEEEEC-------CCCEEEEEEccC
Confidence 34677777666677899999998743311111 0000 00011 11 1 333221 123567778777
Q ss_pred C--CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce--eee-ecCCCccccc--C
Q 046902 178 N--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE--FYQ-LPLPDSVNVS--Y 250 (393)
Q Consensus 178 ~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~--~~~-i~lP~~~~~~--~ 250 (393)
| .|+.-...|. . .......++..+|.+|+-... ..+.++|..+.+ |+. +..|...... .
T Consensus 180 G~~~W~~~~~~~~---------~-~~~~~~sP~v~~~~v~~~~~~----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 180 GAVKWTVNLDVPS---------L-TLRGESAPATAFGGAIVGGDN----GRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEeeeecCCCCc---------c-cccCCCCCEEECCEEEEEcCC----CEEEEEEccCChhhheeccccCCCccchhcc
Confidence 6 4876543221 0 011234567788888886543 579999998754 543 2333221100 0
Q ss_pred CceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEE
Q 046902 251 ANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVW 330 (393)
Q Consensus 251 ~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ 330 (393)
......-+..+|.|++..... .+..++-...+..|.... . . ...|. + +++.||+...+..++.
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~~~--~--~------~~~~~-~--~~~~vy~~~~~g~l~a 308 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKREY--G--S------VNDFA-V--DGGRIYLVDQNDRVYA 308 (394)
T ss_pred cccCCCcEEECCEEEEEEcCC----eEEEEECCCCCEEEeecC--C--C------ccCcE-E--ECCEEEEEcCCCeEEE
Confidence 000112234578887766432 234444322245686531 1 1 01222 2 3567888777778999
Q ss_pred EECCCCcE
Q 046902 331 FDLETNSL 338 (393)
Q Consensus 331 yd~~t~~~ 338 (393)
+|.++++.
T Consensus 309 ld~~tG~~ 316 (394)
T PRK11138 309 LDTRGGVE 316 (394)
T ss_pred EECCCCcE
Confidence 99999864
No 52
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.47 E-value=13 Score=35.35 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=70.1
Q ss_pred eEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCcee-EEEEEeCCeEEEEEEcCCCeEEEEEEeecCC
Q 046902 208 VLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVH-VDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV 285 (393)
Q Consensus 208 v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~-~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~ 285 (393)
..-+|. .-+.++ ...++.+||+.+.+...+..|.... ...+. +.+.. +|...++.+... .|.+=..+
T Consensus 265 f~p~G~~~i~~s~---rrky~ysyDle~ak~~k~~~~~g~e--~~~~e~FeVSh-d~~fia~~G~~G-~I~lLhak---- 333 (514)
T KOG2055|consen 265 FAPNGHSVIFTSG---RRKYLYSYDLETAKVTKLKPPYGVE--EKSMERFEVSH-DSNFIAIAGNNG-HIHLLHAK---- 333 (514)
T ss_pred ecCCCceEEEecc---cceEEEEeeccccccccccCCCCcc--cchhheeEecC-CCCeEEEcccCc-eEEeehhh----
Confidence 334565 333332 2468999999999999999887764 22222 22222 333333333322 55554433
Q ss_pred CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEEEEe
Q 046902 286 KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~~~ 344 (393)
...|..-..|.- ...-+.+..+|..|+.....+.++.+|+..+.......+
T Consensus 334 T~eli~s~KieG--------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 334 TKELITSFKIEG--------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred hhhhhheeeecc--------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 234544444432 345566777887777776666899999999976655443
No 53
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.08 E-value=9.4 Score=36.94 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=50.4
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCe--EEcc---
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSW--RRIS--- 184 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W--~~~~--- 184 (393)
+++.|+|.+|+||. +|... -+.+.....+||.+|. -|+++++.-.+- ..+.=+.|.+...+| +.+.
T Consensus 57 DELHvYNTatnqWf-~Pavr--GDiPpgcAA~GfvcdG----trilvFGGMvEY--GkYsNdLYELQasRWeWkrlkp~~ 127 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVR--GDIPPGCAAFGFVCDG----TRILVFGGMVEY--GKYSNDLYELQASRWEWKRLKPKT 127 (830)
T ss_pred hhhhhhccccceee-cchhc--CCCCCchhhcceEecC----ceEEEEccEeee--ccccchHHHhhhhhhhHhhcCCCC
Confidence 57999999999997 55544 2333334455555553 266665532211 344556777777665 4442
Q ss_pred ---ccCcccccccccccccccccCceeEeCceEEEecc
Q 046902 185 ---NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSP 219 (393)
Q Consensus 185 ---~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~ 219 (393)
..|++.+ ..++=+.++.+.|.+++
T Consensus 128 p~nG~pPCPR-----------lGHSFsl~gnKcYlFGG 154 (830)
T KOG4152|consen 128 PKNGPPPCPR-----------LGHSFSLVGNKCYLFGG 154 (830)
T ss_pred CCCCCCCCCc-----------cCceeEEeccEeEEecc
Confidence 2232221 22333456678888864
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=89.66 E-value=0.45 Score=30.10 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=18.5
Q ss_pred EEEEEEEeecCCCCccEEEEEEeCCCCeEEccccC
Q 046902 153 KLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 153 kVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p 187 (393)
+|+.++...........+++|+..+++|+.++.+|
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 45555543332224457899999999999997666
No 55
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.54 E-value=3.4 Score=37.02 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
.+.|..+...+. .++||.+++.+.-.. +....+.. ..--++..++|.++|....++.+-.||+.+++...
T Consensus 39 ~~~~~~A~SWD~-tVR~wevq~~g~~~~---ka~~~~~~------PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 39 ADNLLAAGSWDG-TVRIWEVQNSGQLVP---KAQQSHDG------PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred cCceEEecccCC-ceEEEEEecCCcccc---hhhhccCC------CeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence 445555555555 999999998542111 11112111 11123455789999998877789999999999999
Q ss_pred EEEecCCCC
Q 046902 341 VKIDTHGLD 349 (393)
Q Consensus 341 v~~~~~~~~ 349 (393)
|.. +..|
T Consensus 109 v~~--Hd~p 115 (347)
T KOG0647|consen 109 VAA--HDAP 115 (347)
T ss_pred eee--cccc
Confidence 976 6555
No 56
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.81 E-value=8 Score=34.46 Aligned_cols=124 Identities=17% Similarity=0.268 Sum_probs=73.1
Q ss_pred EEeeeeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEE
Q 046902 94 EVLGSCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEV 172 (393)
Q Consensus 94 ~~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~V 172 (393)
-+++.-+|-|-... ....+.-.||.++.-..+|.+. ..... . =...-|+... +.+.. ...-.+..
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~--~~~~g-s--Rriwsdpig~----~witt-----wg~g~l~r 258 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN--ALKAG-S--RRIWSDPIGR----AWITT-----WGTGSLHR 258 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccCCcceecCCC--ccccc-c--cccccCccCc----EEEec-----cCCceeeE
Confidence 35566666665553 2345777899999777788776 11111 1 1233344322 22221 13567889
Q ss_pred EEeCCCCeEEccccCcccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcc
Q 046902 173 YSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSV 246 (393)
Q Consensus 173 yss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~ 246 (393)
|+..+.+|.+-. +|. .. ....+++++. -.-|+..- ....|..||.++++|+.+++|...
T Consensus 259 fdPs~~sW~eyp-LPg----------s~--arpys~rVD~~grVW~sea--~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 259 FDPSVTSWIEYP-LPG----------SK--ARPYSMRVDRHGRVWLSEA--DAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred eCcccccceeee-CCC----------CC--CCcceeeeccCCcEEeecc--ccCceeecCcccceEEEecCCCCC
Confidence 999999999764 331 11 1222344332 23455432 346899999999999999988654
No 57
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.65 E-value=20 Score=33.17 Aligned_cols=116 Identities=19% Similarity=0.283 Sum_probs=63.6
Q ss_pred CccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCce-EEEeccC-----CCCCcEEEEEECCCceeee
Q 046902 166 DDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPK-----SSTRSVIVAFDLVAEEFYQ 239 (393)
Q Consensus 166 ~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~-----~~~~~~il~fD~~~e~~~~ 239 (393)
....+-+|++.++.|+.....| + .....+++...|. +-.+..+ ....-...-|.-...+|..
T Consensus 194 ~n~ev~sy~p~~n~W~~~G~~p----------f--~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 194 FNKEVLSYDPSTNQWRNLGENP----------F--YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred ccccccccccccchhhhcCcCc----------c--cCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 4557888999999999998777 1 1223344554444 3333332 1122345555566788988
Q ss_pred e-cCCCcccccCCce-eEEEEEeCCeEEEEEEc---------------CCC------eEEEEEEeecCCCCCeEEEEEee
Q 046902 240 L-PLPDSVNVSYANV-HVDVGSLEGCLCVFRFY---------------NLV------YVDMWMMKEHAVKESWTKLFSVQ 296 (393)
Q Consensus 240 i-~lP~~~~~~~~~~-~~~l~~~~G~L~~~~~~---------------~~~------~~~iW~l~~~~~~~~W~~~~~i~ 296 (393)
+ ++|.....+.... ...-+..+|.+-+.... ... +-+||.+++ .+|..+..++
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp 337 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELP 337 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccC
Confidence 6 5665543100111 11223445555554321 011 457888873 6799888777
Q ss_pred C
Q 046902 297 E 297 (393)
Q Consensus 297 ~ 297 (393)
.
T Consensus 338 ~ 338 (381)
T COG3055 338 Q 338 (381)
T ss_pred C
Confidence 5
No 58
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.62 E-value=21 Score=33.36 Aligned_cols=175 Identities=14% Similarity=0.155 Sum_probs=90.8
Q ss_pred ceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC--eEEccc--cCcccccccccccccccccCceeEeCce
Q 046902 138 FTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS--WRRISN--LPRFLRDFYDYLYHSLFRKGYGVLAGGA 213 (393)
Q Consensus 138 ~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~--W~~~~~--~p~~~~~~~~~~~~~~~~~~~~v~~~G~ 213 (393)
...+.+.++|..+.. .+. .. ..-++.+|+...+. ...... +|.. ...++-...-+|.
T Consensus 144 ~h~H~v~~~pdg~~v-~v~--dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G-----------~GPRh~~f~pdg~ 204 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFV-YVP--DL-----GADRVYVYDIDDDTGKLTPVDSIKVPPG-----------SGPRHLAFSPDGK 204 (345)
T ss_dssp TCEEEEEE-TTSSEE-EEE--ET-----TTTEEEEEEE-TTS-TEEEEEEEECSTT-----------SSEEEEEE-TTSS
T ss_pred ccceeEEECCCCCEE-EEE--ec-----CCCEEEEEEEeCCCceEEEeeccccccC-----------CCCcEEEEcCCcC
Confidence 345567777764432 221 11 24578899887765 544321 2210 0011111223555
Q ss_pred EEEeccCCCCCcEEEEEECC--Cceeeee----cCCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCC
Q 046902 214 LHWVSPKSSTRSVIVAFDLV--AEEFYQL----PLPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVK 286 (393)
Q Consensus 214 lyw~~~~~~~~~~il~fD~~--~e~~~~i----~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~ 286 (393)
.-++..+ ....|.+|++. +..++.+ .+|.... .......+... +|+..++.....+.|.++.++.. .
T Consensus 205 ~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~--~ 278 (345)
T PF10282_consen 205 YAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFT--GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA--T 278 (345)
T ss_dssp EEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSC--SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT--T
T ss_pred EEEEecC--CCCcEEEEeecccCCceeEEEEeeecccccc--ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC--C
Confidence 4444433 24567777766 6666554 2554332 12122344444 67655555555559999998643 2
Q ss_pred CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-cEEEE--EECCCCcEEEEE
Q 046902 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-EKLVW--FDLETNSLRTVK 342 (393)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~l~~--yd~~t~~~~~v~ 342 (393)
+.-+.+..++... ...+-+.+.++|+.+++.... +.+.. .|.+|++++.+.
T Consensus 279 g~l~~~~~~~~~G-----~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 279 GTLTLVQTVPTGG-----KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEEESS-----SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCC-----CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 3455666665421 124556677899988887643 34554 477899988874
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.46 E-value=24 Score=33.82 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=100.2
Q ss_pred eccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEE-ccccCccccccc
Q 046902 116 NPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRR-ISNLPRFLRDFY 194 (393)
Q Consensus 116 NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~-~~~~p~~~~~~~ 194 (393)
+|-++.|...-.++ ..........+.|.|..- |-+++. ...++.+|++.+.+=+. +..+.
T Consensus 8 t~e~~~w~~~~~~~---~~ke~~~vssl~fsp~~P-~d~aVt--------~S~rvqly~~~~~~~~k~~srFk------- 68 (487)
T KOG0310|consen 8 TPEIRYWRQETFPP---VHKEHNSVSSLCFSPKHP-YDFAVT--------SSVRVQLYSSVTRSVRKTFSRFK------- 68 (487)
T ss_pred Cccchhhhhhcccc---cccccCcceeEecCCCCC-CceEEe--------cccEEEEEecchhhhhhhHHhhc-------
Confidence 45556666654443 112233444566666532 332222 24689999998754322 21111
Q ss_pred ccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce-eeee---cCCCcccccCCceeEEEEEeCCeEEEEEEc
Q 046902 195 DYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE-FYQL---PLPDSVNVSYANVHVDVGSLEGCLCVFRFY 270 (393)
Q Consensus 195 ~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~-~~~i---~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~ 270 (393)
.. ...-.+..+|.+...+.. ...|-+||+.+.. .+.+ ..|... ......++.+.+.+.+
T Consensus 69 ----~~--v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~iLR~~~ah~apv~~--------~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 69 ----DV--VYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRVILRQLYAHQAPVHV--------TKFSPQDNTMLVSGSD 131 (487)
T ss_pred ----cc--eeEEEeecCCeEEEccCC---cCcEEEeccccHHHHHHHhhccCceeE--------EEecccCCeEEEecCC
Confidence 00 011123466999887554 5789999966522 1222 233222 2344557777766665
Q ss_pred CCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEECCCCcEEEEEEecCCCC
Q 046902 271 NLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNSLRTVKIDTHGLD 349 (393)
Q Consensus 271 ~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~~t~~~~~v~~~~~~~~ 349 (393)
+. ...+|.+.... + ...+.-.. +..+-..+.+..+.|++.. .++++-.||..+.+-..++++ +|.|
T Consensus 132 d~-v~k~~d~s~a~-----v-~~~l~~ht-----DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p 198 (487)
T KOG0310|consen 132 DK-VVKYWDLSTAY-----V-QAELSGHT-----DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP 198 (487)
T ss_pred Cc-eEEEEEcCCcE-----E-EEEecCCc-----ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc
Confidence 54 89999988521 2 33333211 2345556666556677653 456899999999874444554 6665
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.87 E-value=5.2 Score=36.85 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=73.1
Q ss_pred cEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCc-eEEEeccCC-------------------------
Q 046902 168 VEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKS------------------------- 221 (393)
Q Consensus 168 ~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~------------------------- 221 (393)
..+..|++.+++|..++...+ .......++..++ .+|+...-.
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP-----------~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSP-----------TGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred eeeEEecCCCChhheeccccc-----------cccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 467899999999999874321 1123444566666 777776420
Q ss_pred -----------CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcC---CCeEEEEEEeecCCC
Q 046902 222 -----------STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYN---LVYVDMWMMKEHAVK 286 (393)
Q Consensus 222 -----------~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~~iW~l~~~~~~ 286 (393)
.....+++||+.+++|+..- .|-.... ....+.-+++|.++...- -++-.+|+.+-.+..
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a-----Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~ 256 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNA-----GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDN 256 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcccCcc-----CcceeecCCeEEEEcceecCCccccceeEEEeccCc
Confidence 12256999999999999984 6655431 123444566688887542 235566666644345
Q ss_pred CCeEEEEEeeCC
Q 046902 287 ESWTKLFSVQEP 298 (393)
Q Consensus 287 ~~W~~~~~i~~~ 298 (393)
..|.+....+.+
T Consensus 257 ~~w~~l~~lp~~ 268 (381)
T COG3055 257 LKWLKLSDLPAP 268 (381)
T ss_pred eeeeeccCCCCC
Confidence 789988666543
No 61
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.81 E-value=24 Score=33.01 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=71.2
Q ss_pred CceEEEeccCCCCCcEEEEEECCCce--eee---ecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCC
Q 046902 211 GGALHWVSPKSSTRSVIVAFDLVAEE--FYQ---LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV 285 (393)
Q Consensus 211 ~G~lyw~~~~~~~~~~il~fD~~~e~--~~~---i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~ 285 (393)
+|...|...- ..+.|..|++..+. ... +.+|.... ..++. ..-+|+.+++.......+.+..++..
T Consensus 154 dg~~v~v~dl--G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G----PRh~~-f~pdg~~~Yv~~e~s~~v~v~~~~~~-- 224 (345)
T PF10282_consen 154 DGRFVYVPDL--GADRVYVYDIDDDTGKLTPVDSIKVPPGSG----PRHLA-FSPDGKYAYVVNELSNTVSVFDYDPS-- 224 (345)
T ss_dssp TSSEEEEEET--TTTEEEEEEE-TTS-TEEEEEEEECSTTSS----EEEEE-E-TTSSEEEEEETTTTEEEEEEEETT--
T ss_pred CCCEEEEEec--CCCEEEEEEEeCCCceEEEeeccccccCCC----CcEEE-EcCCcCEEEEecCCCCcEEEEeeccc--
Confidence 4555555433 34678888887665 433 56666543 11222 22366555554444558888888732
Q ss_pred CCCeEEEEEeeCCCC-CCCcceeeEEEEEeCCcEEEEEEcC-cEEEEEEC--CCCcEEEEE
Q 046902 286 KESWTKLFSVQEPTP-TRSFLFLRPLGYSRNGVKLLLEVRR-EKLVWFDL--ETNSLRTVK 342 (393)
Q Consensus 286 ~~~W~~~~~i~~~~~-~~~~~~~~~~~~~~~g~~i~l~~~~-~~l~~yd~--~t~~~~~v~ 342 (393)
...++.+.++..... ........-+.++++|..+|+.... ..+..|++ ++++++.+.
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 346888777775321 1111134557788899988887644 45777776 667888874
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.81 E-value=25 Score=33.21 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=53.4
Q ss_pred eeceEEEeeCCceEEEEeccccceec---cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 99 CNGLIALCNSVQELALFNPSTRKLKT---LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 99 ~~GLl~~~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
.+|.|.+......++.+|+.|++... ++... . . +...+ +. +|+... ....+..++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-----~---~--~p~v~---~~-~v~v~~-------~~g~l~ald~ 122 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL-----S---G--GVGAD---GG-LVFVGT-------EKGEVIALDA 122 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc-----c---c--ceEEc---CC-EEEEEc-------CCCEEEEEEC
Confidence 36677666556678899999987442 22211 0 0 01111 11 232211 1235666776
Q ss_pred CCC--CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce
Q 046902 176 KTN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE 236 (393)
Q Consensus 176 ~t~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~ 236 (393)
.++ .|+.-..-+ ....++..+|.+|..... ..|.++|..+.+
T Consensus 123 ~tG~~~W~~~~~~~---------------~~~~p~v~~~~v~v~~~~----g~l~a~d~~tG~ 166 (377)
T TIGR03300 123 EDGKELWRAKLSSE---------------VLSPPLVANGLVVVRTND----GRLTALDAATGE 166 (377)
T ss_pred CCCcEeeeeccCce---------------eecCCEEECCEEEEECCC----CeEEEEEcCCCc
Confidence 665 587532111 123456678888876443 579999997654
No 63
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=87.71 E-value=13 Score=32.45 Aligned_cols=140 Identities=17% Similarity=0.201 Sum_probs=70.5
Q ss_pred EeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEe--CC--eEEEEEEc----CCCeEEEEEE
Q 046902 209 LAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL--EG--CLCVFRFY----NLVYVDMWMM 280 (393)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~--~G--~L~~~~~~----~~~~~~iW~l 280 (393)
.+||-+ .+... ..+.+.|+.|+++..++.|+............++-. .+ ++..+... ....++|..+
T Consensus 3 sCnGLl-c~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~ 77 (230)
T TIGR01640 3 PCDGLI-CFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL 77 (230)
T ss_pred ccceEE-EEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe
Confidence 467877 34322 479999999999999986654210001101122211 12 12111111 1125666666
Q ss_pred eecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCc-----EEEEEECCCCcEEE-EEEecCCC-C--ee
Q 046902 281 KEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE-----KLVWFDLETNSLRT-VKIDTHGL-D--FV 351 (393)
Q Consensus 281 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~-----~l~~yd~~t~~~~~-v~~~~~~~-~--~~ 351 (393)
.. ++|..+... .... . .... ++.-+|.+.++..... .++.||+++++++. +..+.... . ..
T Consensus 78 ~~----~~Wr~~~~~-~~~~-~---~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~ 147 (230)
T TIGR01640 78 GS----NSWRTIECS-PPHH-P---LKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYL 147 (230)
T ss_pred CC----CCccccccC-CCCc-c---ccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccce
Confidence 53 479876522 1111 1 1111 4444665555543221 69999999999995 65531111 1 23
Q ss_pred eeEEEEeccccC
Q 046902 352 DTEICMASLVPL 363 (393)
Q Consensus 352 ~~~~y~~SL~~~ 363 (393)
....+...|.-+
T Consensus 148 ~L~~~~G~L~~v 159 (230)
T TIGR01640 148 SLINYKGKLAVL 159 (230)
T ss_pred EEEEECCEEEEE
Confidence 455555555443
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.56 E-value=18 Score=31.31 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=64.7
Q ss_pred eeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEe-ecC
Q 046902 207 GVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMK-EHA 284 (393)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~-~~~ 284 (393)
.+..+|.+|..... ..|.++|..+.+-.. ..++..... . ....+|.+++..... .|+.++ ..|
T Consensus 32 ~~~~~~~v~~~~~~----~~l~~~d~~tG~~~W~~~~~~~~~~--~-----~~~~~~~v~v~~~~~----~l~~~d~~tG 96 (238)
T PF13360_consen 32 AVPDGGRVYVASGD----GNLYALDAKTGKVLWRFDLPGPISG--A-----PVVDGGRVYVGTSDG----SLYALDAKTG 96 (238)
T ss_dssp EEEETTEEEEEETT----SEEEEEETTTSEEEEEEECSSCGGS--G-----EEEETTEEEEEETTS----EEEEEETTTS
T ss_pred EEEeCCEEEEEcCC----CEEEEEECCCCCEEEEeeccccccc--e-----eeeccccccccccee----eeEecccCCc
Confidence 44578888877433 689999987665332 344544321 1 366688887776322 566666 333
Q ss_pred CCCCeEE-EEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 285 VKESWTK-LFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 285 ~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
+..|+. ...-+... ...+....-.++.+++...+..++.+|++|++...
T Consensus 97 -~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 97 -KVLWSIYLTSSPPAG------VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp -CEEEEEEE-SSCTCS------TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred -ceeeeeccccccccc------cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 456874 32211111 11111222236778888766789999999998643
No 65
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.53 E-value=27 Score=33.30 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=59.7
Q ss_pred CceeEeCceEEEeccCCCCCcEEEEEECCCc--eeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEee
Q 046902 205 GYGVLAGGALHWVSPKSSTRSVIVAFDLVAE--EFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKE 282 (393)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e--~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~ 282 (393)
..++..+|.+|..... ..+.++|+.+. .|+. +++.. ..++..+|.||+..... . +..++-
T Consensus 250 ~sP~v~~~~vy~~~~~----g~l~ald~~tG~~~W~~-~~~~~---------~~~~~~~~~vy~~~~~g--~--l~ald~ 311 (394)
T PRK11138 250 TTPVVVGGVVYALAYN----GNLVALDLRSGQIVWKR-EYGSV---------NDFAVDGGRIYLVDQND--R--VYALDT 311 (394)
T ss_pred CCcEEECCEEEEEEcC----CeEEEEECCCCCEEEee-cCCCc---------cCcEEECCEEEEEcCCC--e--EEEEEC
Confidence 4567889999987644 57999999865 4654 22110 12344566777665332 2 222332
Q ss_pred cCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 283 HAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
......|.... ..-. ....|+.. ++.|++...+..++.+|.+|++...
T Consensus 312 ~tG~~~W~~~~-~~~~------~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 312 RGGVELWSQSD-LLHR------LLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCCcEEEcccc-cCCC------cccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 11123464311 0000 01334432 3577877777779999999987543
No 66
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=87.48 E-value=0.98 Score=28.60 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=23.8
Q ss_pred EEEEEEEe--ecCCCCccEEEEEEeCCCCeEEcccc
Q 046902 153 KLVRVLHF--KGNDGDDVEVEVYSLKTNSWRRISNL 186 (393)
Q Consensus 153 kVv~~~~~--~~~~~~~~~~~Vyss~t~~W~~~~~~ 186 (393)
|++.++.. .........+++|+.++.+|+.++.+
T Consensus 13 kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 13 KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred EEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 66666554 12223567899999999999998754
No 67
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=87.44 E-value=1.2 Score=28.06 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=21.8
Q ss_pred CceeEe-CceEEEeccCC---CCCcEEEEEECCCceeeee
Q 046902 205 GYGVLA-GGALHWVSPKS---STRSVIVAFDLVAEEFYQL 240 (393)
Q Consensus 205 ~~~v~~-~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i 240 (393)
..++.+ ++.+|.+++.. .....+..||+++++|+.+
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 334555 57888887651 1234689999999999998
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=86.85 E-value=32 Score=33.52 Aligned_cols=186 Identities=13% Similarity=0.097 Sum_probs=96.6
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++|..|++...+...+ ... ....+.|..+ +++..... .....+.+++..++..+.+.....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~------g~~--~~~~wSPDG~--~La~~~~~----~g~~~Iy~~dl~tg~~~~lt~~~~- 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP------GIN--GAPRFSPDGK--KLALVLSK----DGQPEIYVVDIATKALTRITRHRA- 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCC------CCc--CCeeECCCCC--EEEEEEeC----CCCeEEEEEECCCCCeEECccCCC-
Confidence 47999999998877665433 011 1244555433 23222211 123567788888888877643220
Q ss_pred cccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCe-EEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGC-LCVF 267 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~-L~~~ 267 (393)
........-+| .+++.... .....|..+|+.+.+...+...... ....... -+|+ |++.
T Consensus 307 ------------~~~~p~wSpDG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~S-pDG~~l~~~ 367 (448)
T PRK04792 307 ------------IDTEPSWHPDGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQ-----NLGGSIT-PDGRSMIMV 367 (448)
T ss_pred ------------CccceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCC-----CcCeeEC-CCCCEEEEE
Confidence 00111122344 34444332 2335799999988877766432111 1111222 2554 4444
Q ss_pred EEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEE
Q 046902 268 RFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 268 ~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v 341 (393)
.. ......||+++-.+ .....+ ..... ...| .+.++|..|++.... ..++.+|.+.+..+.+
T Consensus 368 ~~-~~g~~~I~~~dl~~--g~~~~l---t~~~~-----d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 368 NR-TNGKFNIARQDLET--GAMQVL---TSTRL-----DESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred Ee-cCCceEEEEEECCC--CCeEEc---cCCCC-----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 33 33367899887432 223222 11110 1233 567788888876532 2478888877766655
No 69
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.48 E-value=27 Score=32.23 Aligned_cols=138 Identities=8% Similarity=0.078 Sum_probs=71.3
Q ss_pred cEEEEEEeCC-CCeEEccccCcccccccccccccccccCceeEe--Cce-EEEeccCCCCCcEEEEEECC-Cceeeeec-
Q 046902 168 VEVEVYSLKT-NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGA-LHWVSPKSSTRSVIVAFDLV-AEEFYQLP- 241 (393)
Q Consensus 168 ~~~~Vyss~t-~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~il~fD~~-~e~~~~i~- 241 (393)
..+.+|+..+ +.++.+...+. . .....+.+ +|. +|.-... ...|.+|++. +..++.+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~----------~---~~~~~l~~spd~~~lyv~~~~---~~~i~~~~~~~~g~l~~~~~ 75 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDV----------P---GQVQPMVISPDKRHLYVGVRP---EFRVLSYRIADDGALTFAAE 75 (330)
T ss_pred CCEEEEEECCCCceeeeeEEec----------C---CCCccEEECCCCCEEEEEECC---CCcEEEEEECCCCceEEeee
Confidence 4577788764 67776654431 0 11112322 454 4544322 3578888886 45565443
Q ss_pred CCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEE
Q 046902 242 LPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLL 320 (393)
Q Consensus 242 lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~ 320 (393)
.|... .. ..++.. +|+..++.......+.+|.+++++. .......+... ....-+.+.++|+.+|
T Consensus 76 ~~~~~----~p--~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~------~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 76 SPLPG----SP--THISTDHQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIEGL------EGCHSANIDPDNRTLW 141 (330)
T ss_pred ecCCC----Cc--eEEEECCCCCEEEEEEcCCCeEEEEEECCCCC--CCCceeeccCC------CcccEeEeCCCCCEEE
Confidence 22111 11 133333 5655444444445899999975442 12222222110 1123356677888887
Q ss_pred EEEc-CcEEEEEECCC
Q 046902 321 LEVR-REKLVWFDLET 335 (393)
Q Consensus 321 l~~~-~~~l~~yd~~t 335 (393)
+... ...+..||+++
T Consensus 142 v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 142 VPCLKEDRIRLFTLSD 157 (330)
T ss_pred EeeCCCCEEEEEEECC
Confidence 7654 35799999976
No 70
>PRK05137 tolB translocation protein TolB; Provisional
Probab=86.26 E-value=34 Score=33.16 Aligned_cols=188 Identities=13% Similarity=0.125 Sum_probs=94.8
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
...++++|+.|++...+...+ . ...+..+.|..+ +++..... .....+.+++..++.-+.+...+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~------g--~~~~~~~SPDG~--~la~~~~~----~g~~~Iy~~d~~~~~~~~Lt~~~~ 290 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFP------G--MTFAPRFSPDGR--KVVMSLSQ----GGNTDIYTMDLRSGTTTRLTDSPA 290 (435)
T ss_pred CCEEEEEECCCCcEEEeecCC------C--cccCcEECCCCC--EEEEEEec----CCCceEEEEECCCCceEEccCCCC
Confidence 357999999999887765433 0 112334444332 22222211 123567777888887766643220
Q ss_pred ccccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVF 267 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~ 267 (393)
. .......-+|. +++.... .....|..+|+.+...+.+....... ..+.....+..|+++
T Consensus 291 ~-------------~~~~~~spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~-----~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 291 I-------------DTSPSYSPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRY-----STPVWSPRGDLIAFT 351 (435)
T ss_pred c-------------cCceeEcCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcc-----cCeEECCCCCEEEEE
Confidence 0 01112223443 4444322 22357888998877666654221110 012222223445554
Q ss_pred EEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEEEE
Q 046902 268 RFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 268 ~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~~v 341 (393)
.... ....||+++-.+ +.. +. +.... . .....+.+||..|++.... ..|+.+|+.+++.+.+
T Consensus 352 ~~~~-~~~~i~~~d~~~--~~~-~~--lt~~~-----~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 352 KQGG-GQFSIGVMKPDG--SGE-RI--LTSGF-----L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EcCC-CceEEEEEECCC--Cce-Ee--ccCCC-----C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 4332 256777766422 222 21 11111 1 1223567788888775431 3699999998887765
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.67 E-value=27 Score=31.78 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=59.7
Q ss_pred ceeEeCceEEEeccCCCCCcEEEEEECCCceee-eecCCCcccccCCceeEEEEEeCCeE---EEEEEcCCCeEEEEEEe
Q 046902 206 YGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVNVSYANVHVDVGSLEGCL---CVFRFYNLVYVDMWMMK 281 (393)
Q Consensus 206 ~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L---~~~~~~~~~~~~iW~l~ 281 (393)
.+|.++|-.-.-+ .....|-.||+.+..=. .+--|.+. .......+.+ .++...++..|.||..+
T Consensus 47 tavAVs~~~~aSG---ssDetI~IYDm~k~~qlg~ll~Hags--------itaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 47 TALAVSGPYVASG---SSDETIHIYDMRKRKQLGILLSHAGS--------ITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred eEEEecceeEecc---CCCCcEEEEeccchhhhcceeccccc--------eEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 3566776533222 23578999999865432 23333221 2223333333 45555555689999866
Q ss_pred ecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEE-EcCcEEEEEECCCCc
Q 046902 282 EHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLE-VRREKLVWFDLETNS 337 (393)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~~~l~~yd~~t~~ 337 (393)
+|+.+.++....- ...-++++|.|. +-+. ..++.+-.+|+-+++
T Consensus 116 ------~W~~~~slK~H~~-----~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 116 ------SWELLKSLKAHKG-----QVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ------CeEEeeeeccccc-----ccceeEecCCCc-eEEEEcCCceeeeehhhcCc
Confidence 4988888876421 244567777654 4333 333345555555544
No 72
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=85.39 E-value=30 Score=31.87 Aligned_cols=157 Identities=11% Similarity=0.116 Sum_probs=86.0
Q ss_pred ccEEEEEEeCCCCeEEccc--cCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeec---
Q 046902 167 DVEVEVYSLKTNSWRRISN--LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP--- 241 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~--~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~--- 241 (393)
.-++.+|+...|.-..... +++ ....++-...-||++-++..+-++.-.++.+|....++..++
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~-----------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKP-----------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred CceEEEEEcccCccccccccccCC-----------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence 4578899998876655432 110 111122223356777666655444445566666667887754
Q ss_pred -CCCcccccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEE
Q 046902 242 -LPDSVNVSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKL 319 (393)
Q Consensus 242 -lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i 319 (393)
+|.+.. .......+-. -+|+..++.-...+.|.+..+++.+ +.=+.+...+.... ..+-+.+.+.|+.+
T Consensus 235 tlP~dF~--g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~--g~L~~~~~~~teg~-----~PR~F~i~~~g~~L 305 (346)
T COG2706 235 TLPEDFT--GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG--GKLELVGITPTEGQ-----FPRDFNINPSGRFL 305 (346)
T ss_pred cCccccC--CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC--CEEEEEEEeccCCc-----CCccceeCCCCCEE
Confidence 787765 2333333332 3777666665554466666666543 22233333333221 12334555667766
Q ss_pred EEEEcC-c--EEEEEECCCCcEEEEEE
Q 046902 320 LLEVRR-E--KLVWFDLETNSLRTVKI 343 (393)
Q Consensus 320 ~l~~~~-~--~l~~yd~~t~~~~~v~~ 343 (393)
+....+ . .++.-|.+|+++..+..
T Consensus 306 iaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 306 IAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEccCCCcEEEEEEcCCCceEEeccc
Confidence 655432 1 47788999999988844
No 73
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=85.37 E-value=18 Score=35.32 Aligned_cols=118 Identities=13% Similarity=0.191 Sum_probs=63.1
Q ss_pred eeeceEEEeeC-CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCNS-VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
..+|-++++++ +.++.||||..++... ... ..+....+..-|.|.+++=.|+... ....+.+|+..
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllh--sI~----TgHtaNIFsvKFvP~tnnriv~sgA-------gDk~i~lfdl~ 125 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLH--SIS----TGHTANIFSVKFVPYTNNRIVLSGA-------GDKLIKLFDLD 125 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceee--eee----cccccceeEEeeeccCCCeEEEecc-------CcceEEEEecc
Confidence 46788888764 4589999999554332 222 1223345666778887776665433 34678888876
Q ss_pred CCCeEEccc-cCcccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCC
Q 046902 177 TNSWRRISN-LPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVA 234 (393)
Q Consensus 177 t~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~ 234 (393)
.-+=+..+. +..-..+|. .+..+...-++.-+| ..+|.+.+ ...|.-+|+..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~---cht~rVKria~~p~~PhtfwsasE---DGtirQyDiRE 179 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWS---CHTDRVKRIATAPNGPHTFWSASE---DGTIRQYDIRE 179 (758)
T ss_pred cccccccccCccchhhhhh---hhhhhhhheecCCCCCceEEEecC---CcceeeecccC
Confidence 422121111 110000000 111111222334455 68888766 35688888764
No 74
>PLN02772 guanylate kinase
Probab=84.52 E-value=6.9 Score=37.06 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=52.0
Q ss_pred cCceeEeCceEEEeccCCC---CCcEEEEEECCCceeeeec----CCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEE
Q 046902 204 KGYGVLAGGALHWVSPKSS---TRSVIVAFDLVAEEFYQLP----LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVD 276 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~---~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~ 276 (393)
...+|.+++++|.+++..+ ....+.+||..+.+|..-. .|... ++ +..+..-+++|.++.......-+
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r----~G-hSa~v~~~~rilv~~~~~~~~~~ 101 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC----KG-YSAVVLNKDRILVIKKGSAPDDS 101 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC----Cc-ceEEEECCceEEEEeCCCCCccc
Confidence 4567889999999987522 3358999999999998732 33322 11 23445558999999865544678
Q ss_pred EEEEee
Q 046902 277 MWMMKE 282 (393)
Q Consensus 277 iW~l~~ 282 (393)
||.|+-
T Consensus 102 ~w~l~~ 107 (398)
T PLN02772 102 IWFLEV 107 (398)
T ss_pred eEEEEc
Confidence 999974
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.37 E-value=0.31 Score=45.63 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHhccCCccceeeeeecccchhhhcCChH
Q 046902 3 KKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQD 40 (393)
Q Consensus 3 ~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~ 40 (393)
-.||.+++..||+-|..++++|++.+|+.|+-+..+..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 46999999999999999999999999999999877654
No 76
>PRK00178 tolB translocation protein TolB; Provisional
Probab=82.55 E-value=48 Score=31.94 Aligned_cols=187 Identities=14% Similarity=0.075 Sum_probs=96.7
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++|..|++...+...+. . .....+.|..+ +++..... .....+.+++..++..+.+...+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g------~--~~~~~~SpDG~--~la~~~~~----~g~~~Iy~~d~~~~~~~~lt~~~~- 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG------L--NGAPAWSPDGS--KLAFVLSK----DGNPEIYVMDLASRQLSRVTNHPA- 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC------C--cCCeEECCCCC--EEEEEEcc----CCCceEEEEECCCCCeEEcccCCC-
Confidence 479999999998877765431 1 11234444332 33222211 123567888999988877653220
Q ss_pred cccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
. .......-+| .+++.... .....|..+|+.+.+...+....... ........+..|++..
T Consensus 288 ----------~--~~~~~~spDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~-----~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 288 ----------I--DTEPFWGKDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYN-----ARPRLSADGKTLVMVH 349 (430)
T ss_pred ----------C--cCCeEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCc-----cceEECCCCCEEEEEE
Confidence 0 0111122244 45655432 23357888999887776654322111 1122222234444444
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v 341 (393)
... ....||.++-.+ .....+. .... ...| .+.++|..|++.... ..++..+..++..+.+
T Consensus 350 ~~~-~~~~l~~~dl~t--g~~~~lt---~~~~-----~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 350 RQD-GNFHVAAQDLQR--GSVRILT---DTSL-----DESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred ccC-CceEEEEEECCC--CCEEEcc---CCCC-----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 332 356777777422 2333322 1110 1233 567788888876532 3588888877765555
No 77
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.52 E-value=44 Score=31.49 Aligned_cols=193 Identities=16% Similarity=0.136 Sum_probs=96.0
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
..+|.+.+...+..++.+|+.|++.+.--... .. ... ....+ ++ +|+... ....+..++..+
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~---~~~--~p~v~---~~-~v~v~~-------~~g~l~a~d~~t 164 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SE---VLS--PPLVA---NG-LVVVRT-------NDGRLTALDAAT 164 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ce---eec--CCEEE---CC-EEEEEC-------CCCeEEEEEcCC
Confidence 34677777656678899999998744321111 00 000 00001 12 333322 123567777776
Q ss_pred C--CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCc--eeee-ecCCCcccccC--
Q 046902 178 N--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAE--EFYQ-LPLPDSVNVSY-- 250 (393)
Q Consensus 178 ~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e--~~~~-i~lP~~~~~~~-- 250 (393)
+ .|+.-...+. .. ......++..+|.+|.-... ..+.++|+.++ .|+. +..|.......
T Consensus 165 G~~~W~~~~~~~~---------~~-~~~~~sp~~~~~~v~~~~~~----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 165 GERLWTYSRVTPA---------LT-LRGSASPVIADGGVLVGFAG----GKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred CceeeEEccCCCc---------ee-ecCCCCCEEECCEEEEECCC----CEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 5 5875432220 00 11124457778877764432 57999999765 4543 23332111000
Q ss_pred CceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEE
Q 046902 251 ANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVW 330 (393)
Q Consensus 251 ~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ 330 (393)
..........+|.+++..... .+..+.++. + +..|... ... ...|. + .++.||+...+..++.
T Consensus 231 ~~~~~~p~~~~~~vy~~~~~g--~l~a~d~~t-G-~~~W~~~----~~~------~~~p~-~--~~~~vyv~~~~G~l~~ 293 (377)
T TIGR03300 231 VDVDGDPVVDGGQVYAVSYQG--RVAALDLRS-G-RVLWKRD----ASS------YQGPA-V--DDNRLYVTDADGVVVA 293 (377)
T ss_pred hccCCccEEECCEEEEEEcCC--EEEEEECCC-C-cEEEeec----cCC------ccCce-E--eCCEEEEECCCCeEEE
Confidence 000112233477777655432 444444432 2 3457653 111 12232 2 3467887766678999
Q ss_pred EECCCCcEE
Q 046902 331 FDLETNSLR 339 (393)
Q Consensus 331 yd~~t~~~~ 339 (393)
+|..+++..
T Consensus 294 ~d~~tG~~~ 302 (377)
T TIGR03300 294 LDRRSGSEL 302 (377)
T ss_pred EECCCCcEE
Confidence 999988643
No 78
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=81.91 E-value=2.9 Score=26.37 Aligned_cols=22 Identities=45% Similarity=0.811 Sum_probs=18.6
Q ss_pred CccEEEEEEeCCCCeEEccccC
Q 046902 166 DDVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 166 ~~~~~~Vyss~t~~W~~~~~~p 187 (393)
....+.+|+..+++|+.+..+|
T Consensus 17 ~~nd~~~~~~~~~~W~~~~~~P 38 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRIGDLP 38 (49)
T ss_pred EecCEEEEECCCCEEEECCCCC
Confidence 3457899999999999997766
No 79
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.58 E-value=45 Score=30.96 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=66.0
Q ss_pred CceEEEeccCCCCCcEEEEEECCCceeeee---cCCCcccccCCceeE---EEE---EeCCeEEEEEEcC------CCeE
Q 046902 211 GGALHWVSPKSSTRSVIVAFDLVAEEFYQL---PLPDSVNVSYANVHV---DVG---SLEGCLCVFRFYN------LVYV 275 (393)
Q Consensus 211 ~G~lyw~~~~~~~~~~il~fD~~~e~~~~i---~lP~~~~~~~~~~~~---~l~---~~~G~L~~~~~~~------~~~~ 275 (393)
+|.+||.+.+ ..|...|++.+.-... .+-..... ...+.+ ++. .-.|+||+.-... ...-
T Consensus 195 ~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~-~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 195 GGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEK-ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp TTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHH-HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred CCeEEEEecC----CEEEEEeccCCcccccCcccccCcccc-ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 3678998776 6899999987754332 12111100 122322 222 2378898875321 2377
Q ss_pred EEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE--cCcEEEEEECCCCcEEE
Q 046902 276 DMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV--RREKLVWFDLETNSLRT 340 (393)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~--~~~~l~~yd~~t~~~~~ 340 (393)
+||+++-. .=.++.+|++.. ....+++..+..=+++.. .+..|+.||..|++...
T Consensus 270 eVWv~D~~----t~krv~Ri~l~~------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 270 EVWVYDLK----THKRVARIPLEH------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEETT----TTEEEEEEEEEE------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEEEEECC----CCeEEEEEeCCC------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 99999842 225778888742 233577887655455543 23579999999987544
No 80
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=81.16 E-value=52 Score=31.40 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=93.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+++++.-.+.-+.|-... .......+.|.. .+ ++.... . .....+.+++..++.-+.+...+.
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~--------~~~~~p~~Spdg-~~-la~~~~-~---~~~~~i~v~d~~~g~~~~~~~~~~- 234 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSR--------EPILSPAWSPDG-QK-LAYVSF-E---SGKPEIYVQDLATGQREKVASFPG- 234 (417)
T ss_pred ceEEEEcCCCCCCEEeecCC--------CceecccCCCCC-CE-EEEEEc-C---CCCcEEEEEECCCCCEEEeecCCC-
Confidence 46888887665545444322 011222344432 23 222221 1 123568889988887665543320
Q ss_pred cccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
. .......-+|. +++.... .....|..+|+.+.....+....... . ..... -+|+-.++.
T Consensus 235 ---------~---~~~~~~spDg~~l~~~~~~-~~~~~i~~~d~~~~~~~~l~~~~~~~---~--~~~~s-~dg~~l~~~ 295 (417)
T TIGR02800 235 ---------M---NGAPAFSPDGSKLAVSLSK-DGNPDIYVMDLDGKQLTRLTNGPGID---T--EPSWS-PDGKSIAFT 295 (417)
T ss_pred ---------C---ccceEECCCCCEEEEEECC-CCCccEEEEECCCCCEEECCCCCCCC---C--CEEEC-CCCCEEEEE
Confidence 0 01112223453 5444332 22356889999887766553211111 0 11111 256544443
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCc---EEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE---KLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~yd~~t~~~~~v 341 (393)
........||.++-.+ ..+..+ .... .......+.++|+.|++..... .++.||+.++..+.+
T Consensus 296 s~~~g~~~iy~~d~~~--~~~~~l---~~~~-----~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 296 SDRGGSPQIYMMDADG--GEVRRL---TFRG-----GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVL 361 (417)
T ss_pred ECCCCCceEEEEECCC--CCEEEe---ecCC-----CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEc
Confidence 3333345788776432 334332 2111 0112235667888888876543 699999999877665
No 81
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.13 E-value=37 Score=29.66 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=93.8
Q ss_pred eeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 99 CNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 99 ~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
.+|-.|+.. +++.+-+|||..+...+-=... .....-.+..+|. -|+.. + .....+.+++..|
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----G~EVlD~~~s~Dn----skf~s-~------GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----GHEVLDAALSSDN----SKFAS-C------GGDKAVQVWDVNT 90 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCC-----Cceeeeccccccc----ccccc-C------CCCceEEEEEccc
Confidence 455555554 5667999999998765421111 0011112222332 22211 1 1345788899888
Q ss_pred C----CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCce
Q 046902 178 N----SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANV 253 (393)
Q Consensus 178 ~----~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~ 253 (393)
| +|+....-- ....+...++|.+.|.+ ...+-++|-.+..+..|+.-.... +.
T Consensus 91 Gkv~Rr~rgH~aqV----------NtV~fNeesSVv~Sgsf---------D~s~r~wDCRS~s~ePiQildea~---D~- 147 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQV----------NTVRFNEESSVVASGSF---------DSSVRLWDCRSRSFEPIQILDEAK---DG- 147 (307)
T ss_pred Ceeeeeccccccee----------eEEEecCcceEEEeccc---------cceeEEEEcccCCCCccchhhhhc---Cc-
Confidence 6 465432111 11223345566666553 357899999999998887655543 11
Q ss_pred eEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEEC
Q 046902 254 HVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDL 333 (393)
Q Consensus 254 ~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~ 333 (393)
..-....+..-+.+..+. +++..-+..- ++....+.. ...-+.+.++|+..+...-+..+-..|-
T Consensus 148 -V~Si~v~~heIvaGS~DG-tvRtydiR~G----------~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 148 -VSSIDVAEHEIVAGSVDG-TVRTYDIRKG----------TLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred -eeEEEecccEEEeeccCC-cEEEEEeecc----------eeehhhcCC---cceeEEecCCCCEEEEeeccceeeeccc
Confidence 223344555555554433 4444333320 011101000 1234566667776666554445666666
Q ss_pred CCCcE
Q 046902 334 ETNSL 338 (393)
Q Consensus 334 ~t~~~ 338 (393)
+|+++
T Consensus 213 ~tGkl 217 (307)
T KOG0316|consen 213 ETGKL 217 (307)
T ss_pred chhHH
Confidence 66553
No 82
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=80.80 E-value=40 Score=29.91 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=62.4
Q ss_pred eCceEEEeccCCCCCcEEEEEECCCcee-eeecCCC-cccccCCceeEEEE-EeCCeEEEEEEcCCCeEEEEEEeecCCC
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPD-SVNVSYANVHVDVG-SLEGCLCVFRFYNLVYVDMWMMKEHAVK 286 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~-~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~~iW~l~~~~~~ 286 (393)
-+|...+.... ....|..+|+.+.+. ..+.... .... .......+. .-+|+..++.......+.+|-++
T Consensus 166 ~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~----- 237 (300)
T TIGR03866 166 ADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK----- 237 (300)
T ss_pred CCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECC-----
Confidence 35654444332 235789999987654 3232211 1000 000011222 23565544433333478888554
Q ss_pred CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEECCCCc-EEEEEE
Q 046902 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNS-LRTVKI 343 (393)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~~t~~-~~~v~~ 343 (393)
.|.....+.... ....+.+.++|+.|+... .+..+..||+++.+ .+.+.+
T Consensus 238 -~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 238 -TYEVLDYLLVGQ------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred -CCcEEEEEEeCC------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 244444443221 233567788888777653 35679999999988 466655
No 83
>smart00612 Kelch Kelch domain.
Probab=80.30 E-value=4.7 Score=24.55 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.9
Q ss_pred ceEEEEeccccceeccCCCC
Q 046902 110 QELALFNPSTRKLKTLPLPP 129 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~ 129 (393)
..+.++||.|++|..+|+++
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeEEEECCCCCeEccCCCCC
Confidence 46889999999999999877
No 84
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=80.14 E-value=43 Score=29.88 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=70.5
Q ss_pred eCceEEEeccCCCCCcEEEEEECCCceee-eecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCC
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKES 288 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~ 288 (393)
.+|.+|=-++. .....|..+|+.+++.. ..++|+... .=.++..+++|+.+.-.+. ..-++-. ..
T Consensus 54 ~~g~LyESTG~-yG~S~l~~~d~~tg~~~~~~~l~~~~F------gEGit~~~d~l~qLTWk~~-~~f~yd~------~t 119 (264)
T PF05096_consen 54 DDGTLYESTGL-YGQSSLRKVDLETGKVLQSVPLPPRYF------GEGITILGDKLYQLTWKEG-TGFVYDP------NT 119 (264)
T ss_dssp ETTEEEEEECS-TTEEEEEEEETTTSSEEEEEE-TTT--------EEEEEEETTEEEEEESSSS-EEEEEET------TT
T ss_pred CCCEEEEeCCC-CCcEEEEEEECCCCcEEEEEECCcccc------ceeEEEECCEEEEEEecCC-eEEEEcc------cc
Confidence 46777765543 34578999999998765 578987653 2267788999999987654 3333222 23
Q ss_pred eEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc-EEEEEEecCCCC
Q 046902 289 WTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS-LRTVKIDTHGLD 349 (393)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~-~~~v~~~~~~~~ 349 (393)
.+++.++..+. .-=|+..+|+.++++..+.+|...|+++-+ .+.|.+...|.|
T Consensus 120 l~~~~~~~y~~--------EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 120 LKKIGTFPYPG--------EGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp TEEEEEEE-SS--------S--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred ceEEEEEecCC--------cceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 56666666532 112333577888888777789999999854 445555323433
No 85
>PLN00181 protein SPA1-RELATED; Provisional
Probab=79.89 E-value=86 Score=33.14 Aligned_cols=191 Identities=12% Similarity=0.047 Sum_probs=95.0
Q ss_pred eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCe-
Q 046902 102 LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSW- 180 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W- 180 (393)
+|.....+..+.|||..+++....-.. +.....++.+++..+.+ ++... ....+.+|+.+++.-
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~-------H~~~V~~l~~~p~~~~~-L~Sgs-------~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKE-------HEKRVWSIDYSSADPTL-LASGS-------DDGSVKLWSINQGVSI 611 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecC-------CCCCEEEEEEcCCCCCE-EEEEc-------CCCEEEEEECCCCcEE
Confidence 444444567899999887764321111 12234566676544433 22222 234688888876531
Q ss_pred EEccccCcccccccccccccccccCceeE---eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEE
Q 046902 181 RRISNLPRFLRDFYDYLYHSLFRKGYGVL---AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDV 257 (393)
Q Consensus 181 ~~~~~~p~~~~~~~~~~~~~~~~~~~~v~---~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l 257 (393)
..+.. . .....+. -+|.....+.. ...|..+|+.+..-....+.... .. -..+
T Consensus 612 ~~~~~-~---------------~~v~~v~~~~~~g~~latgs~---dg~I~iwD~~~~~~~~~~~~~h~----~~-V~~v 667 (793)
T PLN00181 612 GTIKT-K---------------ANICCVQFPSESGRSLAFGSA---DHKVYYYDLRNPKLPLCTMIGHS----KT-VSYV 667 (793)
T ss_pred EEEec-C---------------CCeEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCCccceEecCCC----CC-EEEE
Confidence 11110 0 0001111 13444444332 35789999876431111111111 11 1123
Q ss_pred EEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc
Q 046902 258 GSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 337 (393)
Q Consensus 258 ~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~ 337 (393)
.-.+|...+....+ ..+.||-+........|..+..+.-.. .....+++.++|..|.....++.+..||..+..
T Consensus 668 ~f~~~~~lvs~s~D-~~ikiWd~~~~~~~~~~~~l~~~~gh~-----~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 668 RFVDSSTLVSSSTD-NTLKLWDLSMSISGINETPLHSFMGHT-----NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEeCCCEEEEEECC-CEEEEEeCCCCccccCCcceEEEcCCC-----CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 33466655555444 489999986432122455555544211 123346777777766666666789999987653
No 86
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=76.86 E-value=53 Score=29.10 Aligned_cols=188 Identities=12% Similarity=0.088 Sum_probs=88.9
Q ss_pred CCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEcccc
Q 046902 108 SVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNL 186 (393)
Q Consensus 108 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~ 186 (393)
....+.++|+.+++... ++... . ...+.+++..+ +++.... ....+.+|+.+++. .+...
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~-------~--~~~~~~~~~g~--~l~~~~~------~~~~l~~~d~~~~~--~~~~~ 111 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGP-------D--PELFALHPNGK--ILYIANE------DDNLVTVIDIETRK--VLAEI 111 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCC-------C--ccEEEECCCCC--EEEEEcC------CCCeEEEEECCCCe--EEeEe
Confidence 45679999999887543 43322 1 12355665543 2322221 12368888887653 12111
Q ss_pred CcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCCeEE
Q 046902 187 PRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLC 265 (393)
Q Consensus 187 p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~ 265 (393)
+ .... ...-.+.-+|.+.+.+.. ....+..+|..+.+... +..+... ....+ .-+|+..
T Consensus 112 ~----------~~~~-~~~~~~~~dg~~l~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~-s~dg~~l 171 (300)
T TIGR03866 112 P----------VGVE-PEGMAVSPDGKIVVNTSE--TTNMAHFIDTKTYEIVDNVLVDQRP------RFAEF-TADGKEL 171 (300)
T ss_pred e----------CCCC-cceEEECCCCCEEEEEec--CCCeEEEEeCCCCeEEEEEEcCCCc------cEEEE-CCCCCEE
Confidence 1 0000 011112235665555433 12346667887654432 2221111 01112 2356544
Q ss_pred EEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCC--CCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEECCCCcEEE
Q 046902 266 VFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEP--TPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNSLRT 340 (393)
Q Consensus 266 ~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~--~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~~t~~~~~ 340 (393)
++.......+.+|-++.. ....++... ..........-+.+.++|+.+++.. ....+..||+++.+...
T Consensus 172 ~~~~~~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATR------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred EEEcCCCCEEEEEEcCcc------eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 444433448889977641 222222211 1000000112355678888777654 23469999999877654
No 87
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.81 E-value=80 Score=30.59 Aligned_cols=154 Identities=9% Similarity=0.039 Sum_probs=80.0
Q ss_pred ccEEEEEEeCCCCeEEcc-ccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCc
Q 046902 167 DVEVEVYSLKTNSWRRIS-NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~-~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 245 (393)
.-.+.+|++.+++=+.++ .+|.....-...+....-....=..++|-++-+.+. .....++....-- ++++..
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR----GkaFi~~~~~~~~--iqv~~~ 359 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR----GKAFIMRPWDGYS--IQVGKK 359 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec----CcEEEECCCCCee--EEcCCC
Confidence 346788999999888775 344221100000000000011124567777777655 4555565443332 334332
Q ss_pred ccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 246 VNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
.. -. ...+......+ +++..+...+.|.-.+. .++.++... .+....+++.++|..+++..+.
T Consensus 360 ~~---Vr-Y~r~~~~~e~~-vigt~dgD~l~iyd~~~-------~e~kr~e~~-----lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 360 GG---VR-YRRIQVDPEGD-VIGTNDGDKLGIYDKDG-------GEVKRIEKD-----LGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred Cc---eE-EEEEccCCcce-EEeccCCceEEEEecCC-------ceEEEeeCC-----ccceEEEEEcCCCcEEEEEcCc
Confidence 21 11 23444444433 33333333666654332 123333321 1124467788898888888766
Q ss_pred cEEEEEECCCCcEEEEEE
Q 046902 326 EKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 326 ~~l~~yd~~t~~~~~v~~ 343 (393)
..+..+|++|++.+.++-
T Consensus 423 ~el~vididngnv~~idk 440 (668)
T COG4946 423 FELWVIDIDNGNVRLIDK 440 (668)
T ss_pred eEEEEEEecCCCeeEecc
Confidence 679999999999998843
No 88
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.37 E-value=83 Score=31.47 Aligned_cols=121 Identities=18% Similarity=0.170 Sum_probs=64.0
Q ss_pred CceeEeCceEEEeccCCCCCcEEEEEECCC--ceeeee-cCCCcccc--cCCceeEEEEEeCCeEEEEEEcCCCeEEEEE
Q 046902 205 GYGVLAGGALHWVSPKSSTRSVIVAFDLVA--EEFYQL-PLPDSVNV--SYANVHVDVGSLEGCLCVFRFYNLVYVDMWM 279 (393)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~--e~~~~i-~lP~~~~~--~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~ 279 (393)
..+++++|.+|..... ..|.++|..+ +.|+.- ..|..... ........++..+|++++..... .|..
T Consensus 63 stPvv~~g~vyv~s~~----g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg----~l~A 134 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY----SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA----RLVA 134 (527)
T ss_pred cCCEEECCEEEEECCC----CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC----EEEE
Confidence 4568899999987543 4799999986 456652 33322210 00001123455677777654322 3455
Q ss_pred EeecCCCCCeEEEEEeeCCCCCCCcc-eeeEEEEEeCCcEEEEEEc------CcEEEEEECCCCcEEE
Q 046902 280 MKEHAVKESWTKLFSVQEPTPTRSFL-FLRPLGYSRNGVKLLLEVR------REKLVWFDLETNSLRT 340 (393)
Q Consensus 280 l~~~~~~~~W~~~~~i~~~~~~~~~~-~~~~~~~~~~g~~i~l~~~------~~~l~~yd~~t~~~~~ 340 (393)
|+-...+..|.... .+... ... ...|+.. ++.|++... +..|+.||.+|++...
T Consensus 135 LDa~TGk~~W~~~~-~~~~~---~~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 135 LDAKTGKVVWSKKN-GDYKA---GYTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EECCCCCEEeeccc-ccccc---cccccCCcEEE---CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 55322245576432 11110 001 1234443 346777542 3469999999998554
No 89
>PRK04043 tolB translocation protein TolB; Provisional
Probab=73.71 E-value=89 Score=30.17 Aligned_cols=102 Identities=13% Similarity=0.188 Sum_probs=59.8
Q ss_pred CcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCC-eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCC
Q 046902 224 RSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEG-CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTR 302 (393)
Q Consensus 224 ~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (393)
...|..+|+.+.+-+.+.-..... ..... .-+| +|.+.... ...-+||.++-.+ ..+..+...+..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~-----~~~~~-SPDG~~la~~~~~-~g~~~Iy~~dl~~--g~~~~LT~~~~~---- 278 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGML-----VVSDV-SKDGSKLLLTMAP-KGQPDIYLYDTNT--KTLTQITNYPGI---- 278 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcE-----EeeEE-CCCCCEEEEEEcc-CCCcEEEEEECCC--CcEEEcccCCCc----
Confidence 357999999888776664222211 01122 2355 45555433 3367899988533 345554322210
Q ss_pred CcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEEE
Q 046902 303 SFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTVK 342 (393)
Q Consensus 303 ~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v~ 342 (393)
...| .+.+||..|++..+. ..++.+|+++++.+++-
T Consensus 279 ---d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 279 ---DVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred ---cCcc-EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 1122 467788888887643 26999999999987773
No 90
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=73.32 E-value=93 Score=30.18 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=69.1
Q ss_pred ChHHHHHHHhcccCCCCceEEEeecCCCeeeecCCCCCCCCcccccCCCCCC----------CCccEEeeeeeceEEEee
Q 046902 38 SQDFIKLHLNHSITTRSNRRLILKGAHDLYALDFDTLTLGTGVQPHHHPLNI----------GSGTEVLGSCNGLIALCN 107 (393)
Q Consensus 38 s~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~s~~GLl~~~~ 107 (393)
...|..-+.++..+ ..--++++.....|.+++..-.-. ..++.+|+.. .....-.+..+|=.....
T Consensus 263 HTnFtdYY~R~~ns--DGkrIvFq~~GdIylydP~td~le--kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V 338 (668)
T COG4946 263 HTNFTDYYPRNANS--DGKRIVFQNAGDIYLYDPETDSLE--KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV 338 (668)
T ss_pred cCCchhccccccCC--CCcEEEEecCCcEEEeCCCcCcce--eeecCCccccccccccccCHHHhhhhhccCCCcEEEEE
Confidence 45566666666644 345567776777777776432111 2233334331 111122344555333333
Q ss_pred CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEcc
Q 046902 108 SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRIS 184 (393)
Q Consensus 108 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~ 184 (393)
+....+|.||.-+-...++... ...-..++.|+. +++.... ..-.+.||+.+++.=+.+.
T Consensus 339 SRGkaFi~~~~~~~~iqv~~~~-------~VrY~r~~~~~e----~~vigt~------dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 339 SRGKAFIMRPWDGYSIQVGKKG-------GVRYRRIQVDPE----GDVIGTN------DGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred ecCcEEEECCCCCeeEEcCCCC-------ceEEEEEccCCc----ceEEecc------CCceEEEEecCCceEEEee
Confidence 4678899999999888887655 122233444543 2332221 3457899999998766664
No 91
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=73.27 E-value=10 Score=28.53 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=31.2
Q ss_pred CceEEEEecccc-ceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEE
Q 046902 109 VQELALFNPSTR-KLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVL 158 (393)
Q Consensus 109 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 158 (393)
...++++||.|+ .|. |..+ ....+.+.+|+..+.|+||.+.
T Consensus 10 rA~V~~yd~~tKk~Wv--Ps~~-------~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWI--PASK-------HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeE--eCCC-------CceeEEEEecCCCcEEEEEEec
Confidence 357999999997 775 3333 2356788999999999999864
No 92
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=73.07 E-value=64 Score=28.21 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=65.5
Q ss_pred CceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeE
Q 046902 211 GGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWT 290 (393)
Q Consensus 211 ~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~ 290 (393)
+|.+||.... ...|..+|+.+.....+.+|... ...+..-+|+|+++... .+.+. +.. ...++
T Consensus 11 ~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~~~-------G~~~~~~~g~l~v~~~~---~~~~~---d~~-~g~~~ 73 (246)
T PF08450_consen 11 DGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPGPN-------GMAFDRPDGRLYVADSG---GIAVV---DPD-TGKVT 73 (246)
T ss_dssp TTEEEEEETT---TTEEEEEETTTTEEEEEESSSEE-------EEEEECTTSEEEEEETT---CEEEE---ETT-TTEEE
T ss_pred CCEEEEEEcC---CCEEEEEECCCCeEEEEecCCCc-------eEEEEccCCEEEEEEcC---ceEEE---ecC-CCcEE
Confidence 6999999543 46899999999999888887622 11222247888777643 22222 322 35677
Q ss_pred EEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---------cEEEEEECCCCcEEEE
Q 046902 291 KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------~~l~~yd~~t~~~~~v 341 (393)
......... .......-+++.++|+ +++.... ..++.++++ ++.+.+
T Consensus 74 ~~~~~~~~~--~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 74 VLADLPDGG--VPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEETTC--SCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEeeccCCC--cccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 777664211 0111344567777876 6665321 358899999 666655
No 93
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=72.79 E-value=27 Score=33.12 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=72.9
Q ss_pred eeceEEEeeC-----CceEEEEeccccceeccCCCCCC-CCCCCC-ceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEE
Q 046902 99 CNGLIALCNS-----VQELALFNPSTRKLKTLPLPPCL-VGFPSA-FTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVE 171 (393)
Q Consensus 99 ~~GLl~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~-~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 171 (393)
-+.||++.-. .-+++|+|..|++..+|-....+ ...+.. -..+.=||--.++.||++-..
T Consensus 237 vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~------------- 303 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTD------------- 303 (448)
T ss_pred cCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeeccc-------------
Confidence 3556776642 23799999999999888765410 011111 112222444456666665321
Q ss_pred EEEeCCCCeEEccccCcccccccccccccccccCceeEeC--ceEEEeccCCCCCcEEEEEECCCceeeeecCCCccccc
Q 046902 172 VYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAG--GALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVS 249 (393)
Q Consensus 172 Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~--G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~ 249 (393)
.+ ++. +... -..=| ..+|.+.....+...++.||+...+. .-|-.+.
T Consensus 304 -----~~------~l~----------F~r~-----vrSPNGEDvLYvF~~~~~g~~~Ll~YN~I~k~v---~tPi~ch-- 352 (448)
T PF12458_consen 304 -----MD------GLE----------FERK-----VRSPNGEDVLYVFYAREEGRYLLLPYNLIRKEV---ATPIICH-- 352 (448)
T ss_pred -----CC------Cce----------EEEE-----ecCCCCceEEEEEEECCCCcEEEEechhhhhhh---cCCeecc--
Confidence 11 111 0000 00112 36777766556678899999877543 3444332
Q ss_pred CCceeEEEEEeCCeEEEEEEcCC-----CeEEEEEEe
Q 046902 250 YANVHVDVGSLEGCLCVFRFYNL-----VYVDMWMMK 281 (393)
Q Consensus 250 ~~~~~~~l~~~~G~L~~~~~~~~-----~~~~iW~l~ 281 (393)
+ .-.--+|.|+++..... .-+.||.--
T Consensus 353 --G---~alf~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 353 --G---YALFEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred --c---eeEecCCEEEEEecCCCCcceeccceeecCC
Confidence 2 22335999999986522 157888753
No 94
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=71.92 E-value=8.6 Score=30.08 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=37.9
Q ss_pred CCcEEEEEEc----CcEEEEEECCCCcEEEEEEec--CCCC-eeeeEEEEeccccCCCCCCCC
Q 046902 315 NGVKLLLEVR----REKLVWFDLETNSLRTVKIDT--HGLD-FVDTEICMASLVPLSDKGGGC 370 (393)
Q Consensus 315 ~g~~i~l~~~----~~~l~~yd~~t~~~~~v~~~~--~~~~-~~~~~~y~~SL~~~~~~~~~~ 370 (393)
||-+.++... ...+++||+++++++.+..|. .... ......|..+|.-+.......
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~ 67 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE 67 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC
Confidence 5644444433 346999999999999998841 1111 677888999998875554443
No 95
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.69 E-value=1.4e+02 Score=31.31 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=24.8
Q ss_pred cCceeEeCceEEEeccCCCCCcEEEEEECCC--ceeee
Q 046902 204 KGYGVLAGGALHWVSPKSSTRSVIVAFDLVA--EEFYQ 239 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~--e~~~~ 239 (393)
...++.++|.+|..... ..|.++|..+ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~----~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH----NKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCC----CeEEEEECCCCcEEEEE
Confidence 45578999999997654 5899999885 55765
No 96
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=69.99 E-value=1e+02 Score=29.39 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=67.7
Q ss_pred EeCceEEEeccCCCCCcEEEEEECCCce---eeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCC
Q 046902 209 LAGGALHWVSPKSSTRSVIVAFDLVAEE---FYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV 285 (393)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~il~fD~~~e~---~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~ 285 (393)
..++.+|.++........|++.|+.+-. |..+-.|... ....-.+...++.|.+...... .-.|.+++-.
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~----~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~-- 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE----DVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLD-- 357 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS----SEEEEEEEEETTEEEEEEEETT-EEEEEEEETT--
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC----ceeEEEEEEECCEEEEEEEECC-ccEEEEEECC--
Confidence 4578888888765555799999998765 5643333322 1112355667888888776544 4444444431
Q ss_pred CCCeEEEEEeeCCCCCCCcceeeEEEE--EeCCcEEEEEEcC----cEEEEEECCCCcEEEEE
Q 046902 286 KESWTKLFSVQEPTPTRSFLFLRPLGY--SRNGVKLLLEVRR----EKLVWFDLETNSLRTVK 342 (393)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~--~~~g~~i~l~~~~----~~l~~yd~~t~~~~~v~ 342 (393)
..|.. ..+.++.. ....++ ..+++.+++...+ ..++.||+++++.+.+.
T Consensus 358 -~~~~~-~~~~~p~~------g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 -DGKES-REIPLPEA------GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp --TEEE-EEEESSSS------SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred -CCcEE-eeecCCcc------eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 13544 33444321 122233 3467788887543 36999999999998774
No 97
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=69.57 E-value=1.3e+02 Score=31.03 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=66.7
Q ss_pred CceeEeCceEEEeccC--------CCCCcEEEEEECCCceeeeecCCCcccc---cCCceeEEEEEe---CCeEEEEEEc
Q 046902 205 GYGVLAGGALHWVSPK--------SSTRSVIVAFDLVAEEFYQLPLPDSVNV---SYANVHVDVGSL---EGCLCVFRFY 270 (393)
Q Consensus 205 ~~~v~~~G~lyw~~~~--------~~~~~~il~fD~~~e~~~~i~lP~~~~~---~~~~~~~~l~~~---~G~L~~~~~~ 270 (393)
...++..++.||+... -.....+++.+.+++.|....+|....- +.....+.-+.. ++-|++-+..
T Consensus 249 ~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 249 HKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred cceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc
Confidence 3346677777888643 1233578999999999999999975421 011111111111 3344444332
Q ss_pred CCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCC
Q 046902 271 NLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETN 336 (393)
Q Consensus 271 ~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~ 336 (393)
-..+-||..+. ++..++..=- +.-..-+++.+||..|.-...++++-+||..++
T Consensus 329 -lgQLlVweWqs----EsYVlKQQgH-------~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 329 -LGQLLVWEWQS----ESYVLKQQGH-------SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred -cceEEEEEeec----cceeeecccc-------ccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 23788888773 3333332111 112345666777766666555666777776664
No 98
>PRK04922 tolB translocation protein TolB; Provisional
Probab=69.33 E-value=1.1e+02 Score=29.50 Aligned_cols=145 Identities=15% Similarity=0.128 Sum_probs=76.4
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCc
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 245 (393)
...+.+++..++.-+.+...+. . .......-+| .+++.... +....|..+|+.+.+...+.--..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g----------~---~~~~~~SpDG~~l~~~~s~-~g~~~Iy~~d~~~g~~~~lt~~~~ 292 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRG----------I---NGAPSFSPDGRRLALTLSR-DGNPEIYVMDLGSRQLTRLTNHFG 292 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCC----------C---ccCceECCCCCEEEEEEeC-CCCceEEEEECCCCCeEECccCCC
Confidence 3567788888887766654331 0 0111223345 35444332 223579999998877655421111
Q ss_pred ccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 246 VNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
. ...+... -+|+-.++.........||.++-.+ .....+. ... . ......+.++|+.|++....
T Consensus 293 ~-----~~~~~~s-pDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt---~~g---~--~~~~~~~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 293 I-----DTEPTWA-PDGKSIYFTSDRGGRPQIYRVAASG--GSAERLT---FQG---N--YNARASVSPDGKKIAMVHGS 356 (433)
T ss_pred C-----ccceEEC-CCCCEEEEEECCCCCceEEEEECCC--CCeEEee---cCC---C--CccCEEECCCCCEEEEEECC
Confidence 1 0112222 2555444333333356788886432 3344332 111 0 11234667888888876432
Q ss_pred ---cEEEEEECCCCcEEEE
Q 046902 326 ---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 326 ---~~l~~yd~~t~~~~~v 341 (393)
..++.+|+++++.+.+
T Consensus 357 ~~~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 357 GGQYRIAVMDLSTGSVRTL 375 (433)
T ss_pred CCceeEEEEECCCCCeEEC
Confidence 2599999999988755
No 99
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.62 E-value=14 Score=20.61 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=19.1
Q ss_pred cEEEEEEcCcEEEEEECCCCcEEE
Q 046902 317 VKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 317 ~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
+.+|+...+..++.+|.++++...
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEE
Confidence 478887777789999999987653
No 100
>PRK04792 tolB translocation protein TolB; Provisional
Probab=68.24 E-value=1.2e+02 Score=29.49 Aligned_cols=145 Identities=14% Similarity=0.181 Sum_probs=77.2
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCc
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 245 (393)
...+.+++..++.-+.+...+. . .......-+|. +++.... +....|..+|+.+.+.+.+.-...
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g----------~---~~~~~wSPDG~~La~~~~~-~g~~~Iy~~dl~tg~~~~lt~~~~ 306 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPG----------I---NGAPRFSPDGKKLALVLSK-DGQPEIYVVDIATKALTRITRHRA 306 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCC----------C---cCCeeECCCCCEEEEEEeC-CCCeEEEEEECCCCCeEECccCCC
Confidence 3567888888887666544331 0 01112223454 4444332 233579999998887766532211
Q ss_pred ccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 246 VNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
.. . .+.. .-+|+-.++.........||.++-.+ ..+.++. ..... ... ..+.++|+.|++....
T Consensus 307 ~~---~--~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~Lt-~~g~~------~~~-~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 307 ID---T--EPSW-HPDGKSLIFTSERGGKPQIYRVNLAS--GKVSRLT-FEGEQ------NLG-GSITPDGRSMIMVNRT 370 (448)
T ss_pred Cc---c--ceEE-CCCCCEEEEEECCCCCceEEEEECCC--CCEEEEe-cCCCC------CcC-eeECCCCCEEEEEEec
Confidence 11 1 1111 23555433333333367888887532 3455432 11100 112 3567788888876432
Q ss_pred ---cEEEEEECCCCcEEEE
Q 046902 326 ---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 326 ---~~l~~yd~~t~~~~~v 341 (393)
..++.+|+++++.+.+
T Consensus 371 ~g~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 371 NGKFNIARQDLETGAMQVL 389 (448)
T ss_pred CCceEEEEEECCCCCeEEc
Confidence 2689999999988765
No 101
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=67.64 E-value=87 Score=27.59 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=72.2
Q ss_pred ccCceeEeCceEEEeccCCCCCcEEEEEECCCcee-eeecCCCcccccC------CceeEEEEEeCCeEEEEEEcCC--C
Q 046902 203 RKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPDSVNVSY------ANVHVDVGSLEGCLCVFRFYNL--V 273 (393)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~------~~~~~~l~~~~G~L~~~~~~~~--~ 273 (393)
.....|+.||++|+.... ...|+.||+.++.- ....+|....... ..-.+.+++.+.-|.++....+ .
T Consensus 69 ~gTg~VVynGs~yynk~~---t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g 145 (249)
T KOG3545|consen 69 DGTGHVVYNGSLYYNKAG---TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAG 145 (249)
T ss_pred cccceEEEcceEEeeccC---CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCC
Confidence 345569999999998543 56899999998543 3456665443100 1113578888888888875432 2
Q ss_pred eEEEEEEeec--CCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc----CcEE-EEEECCCCcEEEEEEe
Q 046902 274 YVDMWMMKEH--AVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR----REKL-VWFDLETNSLRTVKID 344 (393)
Q Consensus 274 ~~~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~----~~~l-~~yd~~t~~~~~v~~~ 344 (393)
.+.|-.|+.. .....|.-- ...- .. .. ++.-.| .++.... ...+ +.||..+++-+.+.|+
T Consensus 146 ~iv~skLdp~tl~~e~tW~T~----~~k~--~~--~~--aF~iCG-vLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 146 TIVLSKLDPETLEVERTWNTT----LPKR--SA--GN--AFMICG-VLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred cEEeeccCHHHhheeeeeccc----cCCC--Cc--Cc--eEEEee-eeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 6666777752 113446322 1110 00 01 111123 2333221 1223 7899999998877663
No 102
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=67.12 E-value=13 Score=27.14 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.2
Q ss_pred cEEEEEECCCCcEEEE
Q 046902 326 EKLVWFDLETNSLRTV 341 (393)
Q Consensus 326 ~~l~~yd~~t~~~~~v 341 (393)
++|+.||+.|++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 3699999999998877
No 103
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=66.97 E-value=19 Score=21.37 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=18.4
Q ss_pred CceeEeCceEEEeccCCCCCcEEEEEECCC
Q 046902 205 GYGVLAGGALHWVSPKSSTRSVIVAFDLVA 234 (393)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~ 234 (393)
..+++.+|.+|.-... ..+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~d----g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD----GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT----SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC----CEEEEEeCCC
Confidence 4568889999988764 6899999864
No 104
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.72 E-value=14 Score=21.80 Aligned_cols=25 Identities=12% Similarity=0.023 Sum_probs=19.7
Q ss_pred cEEEEEEcCcEEEEEECCCCcEEEE
Q 046902 317 VKLLLEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 317 ~~i~l~~~~~~l~~yd~~t~~~~~v 341 (393)
+.||+...+..++.+|.+|++...-
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEe
Confidence 3577776677899999999986654
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=66.58 E-value=24 Score=33.66 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=43.0
Q ss_pred EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCc-EEEEEEcCcEEEEEECCCCcEEEEE
Q 046902 264 LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGV-KLLLEVRREKLVWFDLETNSLRTVK 342 (393)
Q Consensus 264 L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~-~i~l~~~~~~l~~yd~~t~~~~~v~ 342 (393)
|.++.+.+. .+.|..++.- .. .++..|-+..+. ..-..+.++|. .|+.......++.||+++.++..+.
T Consensus 227 lllvaG~d~-~lrifqvDGk--~N--~~lqS~~l~~fP-----i~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 227 LLLVAGLDG-TLRIFQVDGK--VN--PKLQSIHLEKFP-----IQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred eEEEecCCC-cEEEEEecCc--cC--hhheeeeeccCc-----cceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 344444333 7777777641 12 266666664321 22345567887 5666555556999999999999885
Q ss_pred E
Q 046902 343 I 343 (393)
Q Consensus 343 ~ 343 (393)
-
T Consensus 297 ~ 297 (514)
T KOG2055|consen 297 P 297 (514)
T ss_pred C
Confidence 4
No 106
>PRK05137 tolB translocation protein TolB; Provisional
Probab=66.21 E-value=1.3e+02 Score=29.07 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=95.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
.++++++.-++..+.|.... .......+.|..+ +|+.+... .....+.+++..++..+.+...+.
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~--------~~v~~p~wSpDG~--~lay~s~~----~g~~~i~~~dl~~g~~~~l~~~~g- 246 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGS--------SLVLTPRFSPNRQ--EITYMSYA----NGRPRVYLLDLETGQRELVGNFPG- 246 (435)
T ss_pred eEEEEECCCCCCcEEEecCC--------CCeEeeEECCCCC--EEEEEEec----CCCCEEEEEECCCCcEEEeecCCC-
Confidence 47888888666555554322 1123344555432 33333321 123578899999988877754431
Q ss_pred cccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
. .......-+|. +.+.... .....|..+|+.+.....+.--.... . .+... -+|+-.++.
T Consensus 247 ---------~---~~~~~~SPDG~~la~~~~~-~g~~~Iy~~d~~~~~~~~Lt~~~~~~---~--~~~~s-pDG~~i~f~ 307 (435)
T PRK05137 247 ---------M---TFAPRFSPDGRKVVMSLSQ-GGNTDIYTMDLRSGTTTRLTDSPAID---T--SPSYS-PDGSQIVFE 307 (435)
T ss_pred ---------c---ccCcEECCCCCEEEEEEec-CCCceEEEEECCCCceEEccCCCCcc---C--ceeEc-CCCCEEEEE
Confidence 0 11112233453 4443322 23357888999887765543211111 0 11222 255433333
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v 341 (393)
.......+||+++-.+ .....+ .... . ......+.++|+.|++.... ..++.+|++++..+.+
T Consensus 308 s~~~g~~~Iy~~d~~g--~~~~~l---t~~~----~-~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 308 SDRSGSPQLYVMNADG--SNPRRI---SFGG----G-RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred ECCCCCCeEEEEECCC--CCeEEe---ecCC----C-cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 3333356788887433 222222 2110 0 11223466788888776432 3699999988876655
No 107
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=65.11 E-value=1.1e+02 Score=27.99 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=64.5
Q ss_pred eCceEEEeccCCCCCcEEEEEECC--Cceeeee----cCCCcccccCCceeEEEE-EeCCeEEEEEEcCCCeEEEEEEee
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLV--AEEFYQL----PLPDSVNVSYANVHVDVG-SLEGCLCVFRFYNLVYVDMWMMKE 282 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~--~e~~~~i----~lP~~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~~iW~l~~ 282 (393)
-+|...+.... ....|.+||+. +.++..+ .+|.... ...+...+. .-+|+..++.......+.+|.++.
T Consensus 184 pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 184 PNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFS--DTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCC--CCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 44554444433 24678888876 3444332 2343321 111111122 225554444433345899999875
Q ss_pred cCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEEE--ECCCCcEEEEE
Q 046902 283 HAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWF--DLETNSLRTVK 342 (393)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~y--d~~t~~~~~v~ 342 (393)
.+ ..++.+..+.... ...-+.+.++|..++.... ++.+..| |.+++.++.+.
T Consensus 260 ~~--~~~~~~~~~~~~~------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 260 DG--SVLSFEGHQPTET------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred CC--CeEEEeEEEeccc------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 43 4566666665421 1234677788888888654 3445555 55677777763
No 108
>PRK00178 tolB translocation protein TolB; Provisional
Probab=65.05 E-value=1.3e+02 Score=28.82 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=76.7
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCc
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 245 (393)
...+.+++..++.-+.+...+. . .......-+| .+++.... .....|..+|+.+...+.+.-...
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g----------~---~~~~~~SpDG~~la~~~~~-~g~~~Iy~~d~~~~~~~~lt~~~~ 287 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG----------L---NGAPAWSPDGSKLAFVLSK-DGNPEIYVMDLASRQLSRVTNHPA 287 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC----------C---cCCeEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEEcccCCC
Confidence 4568888998887776654331 0 0111222345 34444332 223578999999887766532221
Q ss_pred ccccCCceeEEEEEeCCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc
Q 046902 246 VNVSYANVHVDVGSLEGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR 324 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~ 324 (393)
.. . .+.. .-+|+ |++. ........||.++-.+ +.+..+. ... .......+.++|+.|++...
T Consensus 288 ~~---~--~~~~-spDg~~i~f~-s~~~g~~~iy~~d~~~--g~~~~lt---~~~-----~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 288 ID---T--EPFW-GKDGRTLYFT-SDRGGKPQIYKVNVNG--GRAERVT---FVG-----NYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred Cc---C--CeEE-CCCCCEEEEE-ECCCCCceEEEEECCC--CCEEEee---cCC-----CCccceEECCCCCEEEEEEc
Confidence 11 1 1121 22554 4444 3333356777776422 3454432 111 01223456678888887653
Q ss_pred C---cEEEEEECCCCcEEEE
Q 046902 325 R---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 325 ~---~~l~~yd~~t~~~~~v 341 (393)
. ..++.+|+++++.+.+
T Consensus 351 ~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred cCCceEEEEEECCCCCEEEc
Confidence 2 2599999999988766
No 109
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=63.74 E-value=1.3e+02 Score=28.25 Aligned_cols=211 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred EeeeeeceEEEeeC----------CceEEEEecccccee---ccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEee
Q 046902 95 VLGSCNGLIALCNS----------VQELALFNPSTRKLK---TLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFK 161 (393)
Q Consensus 95 ~~~s~~GLl~~~~~----------~~~~~V~NP~T~~~~---~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~ 161 (393)
+++..+..+..+.. ...+-|+++.|.+.. .+|+-| ..........|++.+..+.--|.-+.
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p---~~~~~~~~~~~~ls~dgk~l~V~n~~--- 125 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP---RFLVGTYPWMTSLTPDNKTLLFYQFS--- 125 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc---hhhccCccceEEECCCCCEEEEecCC---
Q ss_pred cCCCCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccC---CCCCcEEEEEECCCceee
Q 046902 162 GNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK---SSTRSVIVAFDLVAEEFY 238 (393)
Q Consensus 162 ~~~~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~---~~~~~~il~fD~~~e~~~ 238 (393)
....+-|.+..+++=-.--..|.+-.. +..........+.+|.+.-...+ .........||..+.-..
T Consensus 126 ----p~~~V~VvD~~~~kvv~ei~vp~~~~v-----y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~ 196 (352)
T TIGR02658 126 ----PSPAVGVVDLEGKAFVRMMDVPDCYHI-----FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI 196 (352)
T ss_pred ----CCCEEEEEECCCCcEEEEEeCCCCcEE-----EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccc
Q ss_pred eec--CCCcccccCCceeEEEEEeCCeEEEEEEcCCC--eEEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEEEEE
Q 046902 239 QLP--LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLV--YVDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPLGYS 313 (393)
Q Consensus 239 ~i~--lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~--~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~ 313 (393)
.-+ .|... ....+..+|.++++...... ....|.+-..+. ++.|..-. ..|++++
T Consensus 197 ~rP~~~~~dg-------~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g-------------~q~ia~~ 256 (352)
T TIGR02658 197 NHPAYSNKSG-------RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG-------------WQQVAYH 256 (352)
T ss_pred cCCceEcCCC-------cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCc-------------ceeEEEc
Q ss_pred eCCcEEEE-EEcCc---------EEEEEECCCCcEEE
Q 046902 314 RNGVKLLL-EVRRE---------KLVWFDLETNSLRT 340 (393)
Q Consensus 314 ~~g~~i~l-~~~~~---------~l~~yd~~t~~~~~ 340 (393)
++|+.+|+ .+... .+..+|.+|++...
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
No 110
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=63.57 E-value=1.3e+02 Score=28.24 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=66.6
Q ss_pred eeEeCceEEEeccCCCCCcEEEEEECCCce--eeeecCC--CcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEee
Q 046902 207 GVLAGGALHWVSPKSSTRSVIVAFDLVAEE--FYQLPLP--DSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKE 282 (393)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~il~fD~~~e~--~~~i~lP--~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~ 282 (393)
++..+|.+|..... ..|.+||..+.+ |+.-..+ ... ..-+...+|+|++-.... .++.++.
T Consensus 64 ~~~~dg~v~~~~~~----G~i~A~d~~~g~~~W~~~~~~~~~~~-------~~~~~~~~G~i~~g~~~g----~~y~ld~ 128 (370)
T COG1520 64 PADGDGTVYVGTRD----GNIFALNPDTGLVKWSYPLLGAVAQL-------SGPILGSDGKIYVGSWDG----KLYALDA 128 (370)
T ss_pred cEeeCCeEEEecCC----CcEEEEeCCCCcEEecccCcCcceec-------cCceEEeCCeEEEecccc----eEEEEEC
Confidence 58999999998544 479999999876 7664443 111 112233388876665543 6777877
Q ss_pred cCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEE
Q 046902 283 HAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v 341 (393)
......|...... . .....+..+. + +.++....+..++..|.+|.+...-
T Consensus 129 ~~G~~~W~~~~~~--~-----~~~~~~~v~~-~-~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 129 STGTLVWSRNVGG--S-----PYYASPPVVG-D-GTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred CCCcEEEEEecCC--C-----eEEecCcEEc-C-cEEEEecCCCeEEEEEccCCcEEEE
Confidence 3224567664332 0 1122232222 3 4677765556799999998876543
No 111
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=63.10 E-value=23 Score=25.82 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=19.5
Q ss_pred EeC-ceEEEeccC--------------CCCCcEEEEEECCCceeeee
Q 046902 209 LAG-GALHWVSPK--------------SSTRSVIVAFDLVAEEFYQL 240 (393)
Q Consensus 209 ~~~-G~lyw~~~~--------------~~~~~~il~fD~~~e~~~~i 240 (393)
.-+ |.+|+.-.. ......++.||+.+.+.+.+
T Consensus 6 ~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 6 DQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp -TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE
T ss_pred ecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe
Confidence 344 788877543 34457899999999988774
No 112
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=61.68 E-value=1.5e+02 Score=28.20 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=91.7
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++|..|++...+.... .. ..+..+.|..+ +++.... ......+.+++.+++..+.+.....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~------~~--~~~~~~spDg~--~l~~~~~----~~~~~~i~~~d~~~~~~~~l~~~~~- 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP------GM--NGAPAFSPDGS--KLAVSLS----KDGNPDIYVMDLDGKQLTRLTNGPG- 278 (417)
T ss_pred cEEEEEECCCCCEEEeecCC------CC--ccceEECCCCC--EEEEEEC----CCCCccEEEEECCCCCEEECCCCCC-
Confidence 57999999998766654433 01 12244555433 2222211 1123467778888887766643220
Q ss_pred cccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
. .......-+| .+++.... .....|..+|+.+.....+...... ...... .-+|+..++.
T Consensus 279 ----------~--~~~~~~s~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~-----~~~~~~-spdg~~i~~~ 339 (417)
T TIGR02800 279 ----------I--DTEPSWSPDGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGY-----NASPSW-SPDGDLIAFV 339 (417)
T ss_pred ----------C--CCCEEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCC-----ccCeEE-CCCCCEEEEE
Confidence 0 0011112245 45555433 2234788899888776655432211 111122 2356655554
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v 341 (393)
........|+.++-.. .|.+.. .-... ... ..+.++|..|++.... ..++.++.+++..+.+
T Consensus 340 ~~~~~~~~i~~~d~~~---~~~~~l--~~~~~-----~~~-p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 340 HREGGGFNIAVMDLDG---GGERVL--TDTGL-----DES-PSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred EccCCceEEEEEeCCC---CCeEEc--cCCCC-----CCC-ceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 4433466777776422 233221 11100 112 2556788777776432 2466666666555544
No 113
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=61.53 E-value=1e+02 Score=26.33 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=50.1
Q ss_pred cEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeC-CeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCC
Q 046902 225 SVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLE-GCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTR 302 (393)
Q Consensus 225 ~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~-G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (393)
..|..+|+.+.+... +.... .. -..+.... +.+.++.. ....+.+|-+... .....+....
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~------~~-i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~------~~~~~~~~~~--- 177 (289)
T cd00200 115 KTIKVWDVETGKCLTTLRGHT------DW-VNSVAFSPDGTFVASSS-QDGTIKLWDLRTG------KCVATLTGHT--- 177 (289)
T ss_pred CeEEEEECCCcEEEEEeccCC------Cc-EEEEEEcCcCCEEEEEc-CCCcEEEEEcccc------ccceeEecCc---
Confidence 578899988544322 33111 11 11233332 45444443 2338888887631 1222222111
Q ss_pred CcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 303 SFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 303 ~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
....-+.+.+++..++....+..+..||+.+++..
T Consensus 178 --~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 178 --GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred --cccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 01334566677767777766667999999875533
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.52 E-value=1.6e+02 Score=28.28 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=39.8
Q ss_pred eeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE
Q 046902 253 VHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV 323 (393)
Q Consensus 253 ~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~ 323 (393)
+...|+++.|.=.++.......+.+|...+.- ..=..++.+++. ++..-+++..+|..|+...
T Consensus 382 Witsla~i~~sdL~asGS~~G~vrLW~i~~g~--r~i~~l~~ls~~------GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWSGCVRLWKIEDGL--RAINLLYSLSLV------GFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ceeeeEecccCceEEecCCCCceEEEEecCCc--cccceeeecccc------cEEEEEEEccCCCEEEEec
Confidence 44577777666555544444499999998632 234455555543 3567778888887677764
No 115
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=59.82 E-value=27 Score=26.61 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=31.1
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEE
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVL 158 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 158 (393)
...+.+.||.|+.|. |... .......+.+.+++..+.|+|+...
T Consensus 8 rA~Vm~~d~~tk~W~--P~~~----~~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 8 RASVMVYDDSNKKWV--PAGG----GSQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEEeeEEcCCCCcEE--cCCC----CCCCcceEEEEEcCCCCEEEEEEee
Confidence 346889999999865 4322 0123456778889999999999754
No 116
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=59.73 E-value=17 Score=35.14 Aligned_cols=144 Identities=15% Similarity=0.013 Sum_probs=79.5
Q ss_pred EEEEeccccceeccCCCCCCC----CCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc--
Q 046902 112 LALFNPSTRKLKTLPLPPCLV----GFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN-- 185 (393)
Q Consensus 112 ~~V~NP~T~~~~~LP~~~~~~----~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~-- 185 (393)
+..--|.|-.|-++|+..... ..+.....+.+.+++.++.-.+.... .+......+++|+-+.+.|..+..
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW---dG~~~l~DFW~Y~v~e~~W~~iN~~t 307 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGW---DGTQDLADFWAYSVKENQWTCINRDT 307 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCc---ccchhHHHHHhhcCCcceeEEeecCC
Confidence 344467778888888754100 01123445566777665433332211 111234568899999999998852
Q ss_pred -cCcccccccccccccccccCceeEeCc--eEEEeccC--------CCCCcEEEEEECCCceeeeecCCCccccc-CCce
Q 046902 186 -LPRFLRDFYDYLYHSLFRKGYGVLAGG--ALHWVSPK--------SSTRSVIVAFDLVAEEFYQLPLPDSVNVS-YANV 253 (393)
Q Consensus 186 -~p~~~~~~~~~~~~~~~~~~~~v~~~G--~lyw~~~~--------~~~~~~il~fD~~~e~~~~i~lP~~~~~~-~~~~ 253 (393)
.| ..+..++.|..-. ++|-++.. -+.+.-+-.||..+..|..+..-...... ..-+
T Consensus 308 ~~P------------G~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vf 375 (723)
T KOG2437|consen 308 EGP------------GARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVF 375 (723)
T ss_pred CCC------------cchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceee
Confidence 33 1223333343322 67776643 12345689999999999998654332110 1112
Q ss_pred eEEEEEeCCe--EEEEEEc
Q 046902 254 HVDVGSLEGC--LCVFRFY 270 (393)
Q Consensus 254 ~~~l~~~~G~--L~~~~~~ 270 (393)
...+++.+.+ |||.++.
T Consensus 376 DHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 376 DHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred cceeeEecCcceEEEecCe
Confidence 3356666555 8887754
No 117
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=59.26 E-value=1.1e+02 Score=27.67 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=59.3
Q ss_pred cEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCc
Q 046902 225 SVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSF 304 (393)
Q Consensus 225 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 304 (393)
..|..+|.++..++.+++|.... ..+..-.+..-+|.|.+........ +|+-+. .=.+++..+..
T Consensus 124 ~aI~R~dpkt~evt~f~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yG----rLdPa~---~~i~vfpaPqG------ 188 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLPLEHA--DANLETAVFDPWGNLWFTGQIGAYG----RLDPAR---NVISVFPAPQG------ 188 (353)
T ss_pred ceeEEecCcccceEEeecccccC--CCcccceeeCCCccEEEeeccccce----ecCccc---CceeeeccCCC------
Confidence 38999999999999999996553 2333323344467777766432111 343321 11223332211
Q ss_pred ceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEEEE
Q 046902 305 LFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 305 ~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~~ 343 (393)
....-+++.++|++-|-...++.+...|+.+..-+.|.+
T Consensus 189 ~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~ 227 (353)
T COG4257 189 GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ 227 (353)
T ss_pred CCCcceEECCCCcEEEEeccccceEEcccccCCcceecC
Confidence 112335667788755554455568888888876666644
No 118
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=59.17 E-value=50 Score=29.86 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=44.5
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEE--EeCCcEEEEEEcCcEEEEEECCCCcE
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGY--SRNGVKLLLEVRREKLVWFDLETNSL 338 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~--~~~g~~i~l~~~~~~l~~yd~~t~~~ 338 (393)
+|..++-.+.+. .+-+|...++. +.-|..+. . ...++.+ ..+|..|+-+..++.+..+|.+|++-
T Consensus 58 ~gs~~aSgG~Dr-~I~LWnv~gdc-eN~~~lkg---H--------sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFASGGSDR-AIVLWNVYGDC-ENFWVLKG---H--------SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCCeEeecCCcc-eEEEEeccccc-cceeeecc---c--------cceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 677666665554 89999966543 45687661 1 1223433 35788888887788899999999874
Q ss_pred E
Q 046902 339 R 339 (393)
Q Consensus 339 ~ 339 (393)
.
T Consensus 125 ~ 125 (338)
T KOG0265|consen 125 I 125 (338)
T ss_pred e
Confidence 3
No 119
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=59.12 E-value=1.5e+02 Score=27.26 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=60.7
Q ss_pred cEEEEEECCCc-----eeeee---cCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEee
Q 046902 225 SVIVAFDLVAE-----EFYQL---PLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQ 296 (393)
Q Consensus 225 ~~il~fD~~~e-----~~~~i---~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~ 296 (393)
..|+.|++.+. ++..+ ..+.. -..+...+|+|.+... ..+.++.++.. ..+.++....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~--------V~ai~~~~~~lv~~~g---~~l~v~~l~~~---~~l~~~~~~~ 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGP--------VTAICSFNGRLVVAVG---NKLYVYDLDNS---KTLLKKAFYD 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS---------EEEEEEETTEEEEEET---TEEEEEEEETT---SSEEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCc--------ceEhhhhCCEEEEeec---CEEEEEEccCc---ccchhhheec
Confidence 67888888874 44433 22211 2377888999555553 38999999962 2488887776
Q ss_pred CCCCCCCcceeeEEEEEeCCcEEEEEEcCc--EEEEEECCCCcEEEEEE
Q 046902 297 EPTPTRSFLFLRPLGYSRNGVKLLLEVRRE--KLVWFDLETNSLRTVKI 343 (393)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~--~l~~yd~~t~~~~~v~~ 343 (393)
... .+..+...++.|++..-.+ .++.|+.+.+++..+.-
T Consensus 128 ~~~--------~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 128 SPF--------YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp BSS--------SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred ceE--------EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEe
Confidence 532 2344444467888875433 46677888888888855
No 120
>PRK04043 tolB translocation protein TolB; Provisional
Probab=57.80 E-value=1.8e+02 Score=28.02 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=102.7
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
...+++.|..|++-+.|-..+ ... ....+.|.. ..-++.... .....+.+++..++.++.+...+.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~------g~~--~~~~~SPDG-~~la~~~~~-----~g~~~Iy~~dl~~g~~~~LT~~~~ 277 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQ------GML--VVSDVSKDG-SKLLLTMAP-----KGQPDIYLYDTNTKTLTQITNYPG 277 (419)
T ss_pred CCEEEEEECCCCcEEEEecCC------CcE--EeeEECCCC-CEEEEEEcc-----CCCcEEEEEECCCCcEEEcccCCC
Confidence 357999999999988876533 111 122344432 233333221 134678888998999998864441
Q ss_pred ccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCe-EEE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGC-LCV 266 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~-L~~ 266 (393)
........-+| .+|+.... .....|...|+.+.+.+.+..- .. . ..... -+|+ |.+
T Consensus 278 -------------~d~~p~~SPDG~~I~F~Sdr-~g~~~Iy~~dl~~g~~~rlt~~-g~----~--~~~~S-PDG~~Ia~ 335 (419)
T PRK04043 278 -------------IDVNGNFVEDDKRIVFVSDR-LGYPNIFMKKLNSGSVEQVVFH-GK----N--NSSVS-TYKNYIVY 335 (419)
T ss_pred -------------ccCccEECCCCCEEEEEECC-CCCceEEEEECCCCCeEeCccC-CC----c--CceEC-CCCCEEEE
Confidence 01111233345 67777654 2335799999998877554321 10 0 11222 2444 544
Q ss_pred EEEcCC-----CeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcE
Q 046902 267 FRFYNL-----VYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSL 338 (393)
Q Consensus 267 ~~~~~~-----~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~ 338 (393)
+..... ...+|++++-.+ +.+..+..- . .... ..+.+||..|++.... ..|..++++.+.-
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~--g~~~~LT~~---~-----~~~~-p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNS--DYIRRLTAN---G-----VNQF-PRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCC--CCeEECCCC---C-----CcCC-eEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 443321 237888887432 344443221 1 0122 3567899888876532 2589999998876
Q ss_pred EEE
Q 046902 339 RTV 341 (393)
Q Consensus 339 ~~v 341 (393)
..+
T Consensus 405 ~~l 407 (419)
T PRK04043 405 FLF 407 (419)
T ss_pred EEe
Confidence 666
No 121
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=57.54 E-value=3e+02 Score=30.36 Aligned_cols=232 Identities=8% Similarity=0.017 Sum_probs=103.8
Q ss_pred EeeeeeceEEEee-CCceEEEEeccccceeccCCCCCCCCC-------CCCceEEEEeeeCCCCCeEEEEEEEeecCCCC
Q 046902 95 VLGSCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGF-------PSAFTFYGFGQDKINDDYKLVRVLHFKGNDGD 166 (393)
Q Consensus 95 ~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~-------~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 166 (393)
.+++.+|.|.+.+ ...++.++++..+....+..... ... .......++.+|+..+. ++.... .
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~-~G~~dG~~~~a~f~~P~GIavd~~gn~--LYVaDt------~ 644 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE-EGLRDGSFEDATFNRPQGLAYNAKKNL--LYVADT------E 644 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC-cCCCCCchhccccCCCcEEEEeCCCCE--EEEEeC------C
Confidence 4455678777776 35679999987665444443110 000 01122356777765432 222111 2
Q ss_pred ccEEEEEEeCCCCeEEccccC-cccccccccccc-cccccCceeEe---CceEEEeccCCCCCcEEEEEECCCceeeeec
Q 046902 167 DVEVEVYSLKTNSWRRISNLP-RFLRDFYDYLYH-SLFRKGYGVLA---GGALHWVSPKSSTRSVIVAFDLVAEEFYQLP 241 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p-~~~~~~~~~~~~-~~~~~~~~v~~---~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~ 241 (393)
...+.+++..++.=+.+..-. ......-..... .......++.+ +|.+|+.... ...|..+|..+.....+.
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---QHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC---CCeEEEEECCCCeEEEEe
Confidence 235666776655332221100 000000000000 00011223443 6788876433 467999998877655432
Q ss_pred CCCc---ccc---cCCc--eeEEEEEe-CC-eEEEEEEcCCCeEEEEEEeecCCCCCeEEE---------EEeeCC-CCC
Q 046902 242 LPDS---VNV---SYAN--VHVDVGSL-EG-CLCVFRFYNLVYVDMWMMKEHAVKESWTKL---------FSVQEP-TPT 301 (393)
Q Consensus 242 lP~~---~~~---~~~~--~~~~l~~~-~G-~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~---------~~i~~~-~~~ 301 (393)
-... ... .... ....++.. +| .|+++..... .+.+|-++..+ ..+.-- ..+... ...
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~-~Irv~D~~tg~--~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS-SIRALDLKTGG--SRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC-eEEEEECCCCc--EEEEEecccccCcccccccCCCCch
Confidence 1100 000 0000 00123332 44 5887775543 77777665321 111100 000000 000
Q ss_pred CCcceeeE--EEEEeCCcEEEEEEcCcEEEEEECCCCcEEEE
Q 046902 302 RSFLFLRP--LGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 302 ~~~~~~~~--~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v 341 (393)
.......| +++.++|++++-...++++..||++++.+..+
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 00012234 45567776444444556899999999988766
No 122
>PRK04922 tolB translocation protein TolB; Provisional
Probab=57.35 E-value=1.9e+02 Score=27.96 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=92.5
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++|..+++...+-..+ ... ....+.|..+ +|+..... .....+.+++..++.-+.+..-..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~------g~~--~~~~~SpDG~--~l~~~~s~----~g~~~Iy~~d~~~g~~~~lt~~~~- 292 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR------GIN--GAPSFSPDGR--RLALTLSR----DGNPEIYVMDLGSRQLTRLTNHFG- 292 (433)
T ss_pred cEEEEEECCCCCEEEeccCC------CCc--cCceECCCCC--EEEEEEeC----CCCceEEEEECCCCCeEECccCCC-
Confidence 46999999998876664433 011 1233444332 23222211 123567888888887665542210
Q ss_pred cccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
........-+|. +++.... .....|..+|+.+.+...+...... .........+..|++..
T Consensus 293 ------------~~~~~~~spDG~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~-----~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 293 ------------IDTEPTWAPDGKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNY-----NARASVSPDGKKIAMVH 354 (433)
T ss_pred ------------CccceEECCCCCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCC-----ccCEEECCCCCEEEEEE
Confidence 001112223453 5554432 2234688889888776665432111 11122322233444544
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc---CcEEEEEECCCCcEEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR---REKLVWFDLETNSLRTVK 342 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~---~~~l~~yd~~t~~~~~v~ 342 (393)
.. .....||+++-.+ +.... +..... ...| .+.+||..|++... ...|+.+|++++..+.+.
T Consensus 355 ~~-~~~~~I~v~d~~~--g~~~~---Lt~~~~-----~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 355 GS-GGQYRIAVMDLST--GSVRT---LTPGSL-----DESP-SFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CC-CCceeEEEEECCC--CCeEE---CCCCCC-----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 33 2244555555322 22322 211110 1223 56778887777653 236999999887766663
No 123
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=56.69 E-value=2.4e+02 Score=28.99 Aligned_cols=191 Identities=15% Similarity=0.131 Sum_probs=101.0
Q ss_pred EeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEE
Q 046902 95 VLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYS 174 (393)
Q Consensus 95 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vys 174 (393)
+.-+.||=.+.+.....+.+-.-.|++.. +|... ... ....-++..+|. +=+++.+. ...-.++|+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~~--~ed--~d~ita~~l~~d--~~~L~~a~-------rs~llrv~~ 90 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSGS--NED--EDEITALALTPD--EEVLVTAS-------RSQLLRVWS 90 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee-cccCC--ccc--hhhhheeeecCC--ccEEEEee-------ccceEEEEE
Confidence 55567786666655567888888888865 66544 221 222233444443 33444444 345688999
Q ss_pred eCCC----CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecC-CCcccc
Q 046902 175 LKTN----SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPL-PDSVNV 248 (393)
Q Consensus 175 s~t~----~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~l-P~~~~~ 248 (393)
..++ +|+.+..-|... +.+++.-.-++. .+....+.+.|...+..+. +.- |--+
T Consensus 91 L~tgk~irswKa~He~Pvi~-----------------ma~~~~g~LlAt-ggaD~~v~VWdi~~~~~th~fkG~gGvV-- 150 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVIT-----------------MAFDPTGTLLAT-GGADGRVKVWDIKNGYCTHSFKGHGGVV-- 150 (775)
T ss_pred cccchHhHhHhhccCCCeEE-----------------EEEcCCCceEEe-ccccceEEEEEeeCCEEEEEecCCCceE--
Confidence 9875 788776555211 111221122222 2334678888988776654 222 2111
Q ss_pred cCCceeEEEEEeCC---eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 249 SYANVHVDVGSLEG---CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 249 ~~~~~~~~l~~~~G---~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
.+...++ +.-++.+..+..+.+|-+.+.. . .++.+.. ......-+++.+++..++-..++
T Consensus 151 -------ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~---t--cl~~~~~-----H~S~vtsL~~~~d~~~~ls~~RD 213 (775)
T KOG0319|consen 151 -------SSLLFHPHWNRWLLASGATDGTVRVWNLNDKR---T--CLHTMIL-----HKSAVTSLAFSEDSLELLSVGRD 213 (775)
T ss_pred -------EEEEeCCccchhheeecCCCceEEEEEcccCc---h--HHHHHHh-----hhhheeeeeeccCCceEEEeccC
Confidence 1122211 1122333333477778777422 1 1111111 11234567777787777777777
Q ss_pred cEEEEEECCCC
Q 046902 326 EKLVWFDLETN 336 (393)
Q Consensus 326 ~~l~~yd~~t~ 336 (393)
+.+..||+.+-
T Consensus 214 kvi~vwd~~~~ 224 (775)
T KOG0319|consen 214 KVIIVWDLVQY 224 (775)
T ss_pred cEEEEeehhhh
Confidence 77899999653
No 124
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=56.54 E-value=1.9e+02 Score=27.76 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=68.0
Q ss_pred EeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCC
Q 046902 209 LAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKES 288 (393)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~ 288 (393)
.=+|-++-.+.. ...+-.||+.+.. ..-.+|.+.. .. ..+.-.++.-+|+...++..+.+|-|....
T Consensus 356 HpDgLifgtgt~---d~~vkiwdlks~~-~~a~Fpght~----~v-k~i~FsENGY~Lat~add~~V~lwDLRKl~---- 422 (506)
T KOG0289|consen 356 HPDGLIFGTGTP---DGVVKIWDLKSQT-NVAKFPGHTG----PV-KAISFSENGYWLATAADDGSVKLWDLRKLK---- 422 (506)
T ss_pred cCCceEEeccCC---CceEEEEEcCCcc-ccccCCCCCC----ce-eEEEeccCceEEEEEecCCeEEEEEehhhc----
Confidence 345666655433 4578889998877 5556776432 11 133334444455555445479999987532
Q ss_pred eEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEEE
Q 046902 289 WTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVK 342 (393)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~ 342 (393)
...++.+.... ...-+.+...|..+.+...+-.++.|+-.+++|+++.
T Consensus 423 --n~kt~~l~~~~----~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 423 --NFKTIQLDEKK----EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred --ccceeeccccc----cceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 22333332211 1345566667765666544446888899999999984
No 125
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=53.86 E-value=3.4e+02 Score=29.92 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=38.9
Q ss_pred eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCC------CCCcceeeEEEEEeCCcEEEEE-EcCcEEEEEE
Q 046902 260 LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTP------TRSFLFLRPLGYSRNGVKLLLE-VRREKLVWFD 332 (393)
Q Consensus 260 ~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~------~~~~~~~~~~~~~~~g~~i~l~-~~~~~l~~yd 332 (393)
.+|.|+++..... .+.+|-.+. .....+.......+ ...+....-+++.++|. +|+. ..++.+..+|
T Consensus 813 ~dG~LYVADs~N~-rIrviD~~t----g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 813 KDGQIYVADSYNH-KIKKLDPAT----KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLD 886 (1057)
T ss_pred CCCcEEEEECCCC-EEEEEECCC----CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEE
Confidence 4788888876544 787776542 11111111110000 00111233456667776 5554 4456799999
Q ss_pred CCCCcE
Q 046902 333 LETNSL 338 (393)
Q Consensus 333 ~~t~~~ 338 (393)
+++++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 999875
No 126
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=53.75 E-value=1.8e+02 Score=26.72 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=58.7
Q ss_pred ceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEE
Q 046902 212 GALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTK 291 (393)
Q Consensus 212 G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~ 291 (393)
+.+||.-- ....|+.+|..+..-+.+..|.... ...+...+|.|..+.. .+.++..+. ...|+.
T Consensus 37 ~~L~w~DI---~~~~i~r~~~~~g~~~~~~~p~~~~------~~~~~d~~g~Lv~~~~----g~~~~~~~~---~~~~t~ 100 (307)
T COG3386 37 GALLWVDI---LGGRIHRLDPETGKKRVFPSPGGFS------SGALIDAGGRLIACEH----GVRLLDPDT---GGKITL 100 (307)
T ss_pred CEEEEEeC---CCCeEEEecCCcCceEEEECCCCcc------cceeecCCCeEEEEcc----ccEEEeccC---CceeEE
Confidence 56888843 3468999999999999999987653 2234444555544432 222233321 234444
Q ss_pred EEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------------cEEEEEECCCCcEEEE
Q 046902 292 LFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------------~~l~~yd~~t~~~~~v 341 (393)
...+...... ....-..+.++|. +++.... ..|++||+.+...+.+
T Consensus 101 ~~~~~~~~~~---~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 101 LAEPEDGLPL---NRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred eccccCCCCc---CCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 4433321110 0122334455554 4443222 2489999865555544
No 127
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=53.69 E-value=8.1 Score=35.48 Aligned_cols=37 Identities=8% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCCCcHHHHHHHhccCC--------ccceeeeeecccchhhhcCC
Q 046902 2 SKKIPLDIITGIFCRQP--------VKSLLRFRCVSKTCCSLIDS 38 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP--------~~sl~r~r~VcK~W~~li~s 38 (393)
+++||.+++.+|+.|.- -++++.+..|||.|+....+
T Consensus 45 ~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 45 WAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 56899999999999885 23788999999999987544
No 128
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=53.23 E-value=2.9e+02 Score=28.87 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=55.2
Q ss_pred EEEEEECCCceeee---ecCCCcccccCCceeE-EEEEeCCe-EEEEEEcCCCeEEEEEEeecCC----CCCeEEEEEee
Q 046902 226 VIVAFDLVAEEFYQ---LPLPDSVNVSYANVHV-DVGSLEGC-LCVFRFYNLVYVDMWMMKEHAV----KESWTKLFSVQ 296 (393)
Q Consensus 226 ~il~fD~~~e~~~~---i~lP~~~~~~~~~~~~-~l~~~~G~-L~~~~~~~~~~~~iW~l~~~~~----~~~W~~~~~i~ 296 (393)
..-.||.....|.. |..|.+.. +.. .+...--+ -|+.... +..+.||++.++.. ...|..+..=.
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~-----~vat~~~~~~rs~~~vta~~-dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNA-----FVATIFLNPTRSVRCVTASV-DGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCce-----eEEEEEecCcccceeEEecc-CCeEEEEEEecccccCcCccceEEeeeec
Confidence 34456666667744 67776542 111 11111111 2333333 34999999976432 35698765332
Q ss_pred CCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCC-CcEEE
Q 046902 297 EPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLET-NSLRT 340 (393)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t-~~~~~ 340 (393)
. .-. .....++..+|..+.... +..+..||..+ +++..
T Consensus 507 y-~k~----~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 507 Y-HKT----PITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLC 545 (792)
T ss_pred c-ccC----cccchhhcCCCcEEEEec-CCEEEEecCCChhhhhc
Confidence 2 111 133456667876555554 45799999999 44443
No 129
>PRK02889 tolB translocation protein TolB; Provisional
Probab=51.66 E-value=2.3e+02 Score=27.31 Aligned_cols=145 Identities=17% Similarity=0.082 Sum_probs=74.0
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCc
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 245 (393)
...+.+++..++.=+.+...+ .. .......-+| .+.+.... .....|..+|+.+.....+.-...
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~----------g~---~~~~~~SPDG~~la~~~~~-~g~~~Iy~~d~~~~~~~~lt~~~~ 284 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFK----------GS---NSAPAWSPDGRTLAVALSR-DGNSQIYTVNADGSGLRRLTQSSG 284 (427)
T ss_pred CcEEEEEECCCCCEEEeecCC----------CC---ccceEECCCCCEEEEEEcc-CCCceEEEEECCCCCcEECCCCCC
Confidence 345788888777544333222 00 0111222344 34443332 233568888887766554422111
Q ss_pred ccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 246 VNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
.. . .+. ..-+|+..++.........||.++..+ .....+. ... . ......++++|+.|++....
T Consensus 285 ~~---~--~~~-wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt---~~g---~--~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 285 ID---T--EPF-FSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVT---FTG---S--YNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred CC---c--CeE-EcCCCCEEEEEecCCCCcEEEEEECCC--CceEEEe---cCC---C--CcCceEECCCCCEEEEEEcc
Confidence 11 1 112 223665444444433367899987432 3333332 111 0 11123567788888776543
Q ss_pred ---cEEEEEECCCCcEEEE
Q 046902 326 ---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 326 ---~~l~~yd~~t~~~~~v 341 (393)
..++.+|+.+++.+.+
T Consensus 349 ~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred CCcEEEEEEECCCCCeEEc
Confidence 2599999999987766
No 130
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=51.53 E-value=2.2e+02 Score=27.06 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCC-C--eEEEEEEeecCCCCCeEEEEEeeCC
Q 046902 223 TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNL-V--YVDMWMMKEHAVKESWTKLFSVQEP 298 (393)
Q Consensus 223 ~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~--~~~iW~l~~~~~~~~W~~~~~i~~~ 298 (393)
-.+.|+..|+.+.+...+- -..-.. ++...-.+..|.++|.... . .-+||.++.++ ...|....+...
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlg------H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~~- 237 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLG------HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRMEG- 237 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EE------EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TT-
T ss_pred CCceEEEEECCCCceeEEEecCcccc------CcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCCC-
Confidence 3578999999998887763 221111 2334445777777776531 1 34789999766 344533222211
Q ss_pred CCCCCcceeeEEEEEeCCcEEEEEEc--C---cEEEEEECCCCcEEEE
Q 046902 299 TPTRSFLFLRPLGYSRNGVKLLLEVR--R---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 299 ~~~~~~~~~~~~~~~~~g~~i~l~~~--~---~~l~~yd~~t~~~~~v 341 (393)
....-=.+.++|..|+.... + ..+..||++|.+-+.+
T Consensus 238 ------e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 238 ------ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp ------EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred ------cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 11222233457877776432 2 2589999999876655
No 131
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.75 E-value=89 Score=32.88 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=52.7
Q ss_pred EEeCCeEEEEE-EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCC
Q 046902 258 GSLEGCLCVFR-FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETN 336 (393)
Q Consensus 258 ~~~~G~L~~~~-~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~ 336 (393)
+...+.|=++. +.++..+.+|+|.+ ...|+.-..=. .+....-+-+++..+.|+-...++.+-+||++.+
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmne---tKaWEvDtcrg------H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNE---TKAWEVDTCRG------HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEecc---ccceeehhhhc------ccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 33455443333 23345899999997 35697632111 1223445666777677776666677899999987
Q ss_pred c-EEEEEEecCCCCeeeeEEEEecc
Q 046902 337 S-LRTVKIDTHGLDFVDTEICMASL 360 (393)
Q Consensus 337 ~-~~~v~~~~~~~~~~~~~~y~~SL 360 (393)
+ ++.+.- ..++|++..=.|+|
T Consensus 283 t~v~tfrr---endRFW~laahP~l 304 (1202)
T KOG0292|consen 283 TSVQTFRR---ENDRFWILAAHPEL 304 (1202)
T ss_pred cceeeeec---cCCeEEEEEecCCc
Confidence 6 333322 22366665555443
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=49.66 E-value=2.7e+02 Score=27.42 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=23.6
Q ss_pred eEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEEEE
Q 046902 308 RPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 308 ~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~~ 343 (393)
.-.++++.| .|.+....+..++.|.+++.+-.+..
T Consensus 411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~ 445 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT 445 (626)
T ss_pred eEeeccCcc-eEEEeeccceEEEEecccceeEEEEe
Confidence 345677766 66666666678888888877666654
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=48.88 E-value=3.1e+02 Score=27.92 Aligned_cols=197 Identities=14% Similarity=0.100 Sum_probs=93.2
Q ss_pred eeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 96 LGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 96 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
..-..|.|...++.+.+-+||+.++....=-.. ......+++.++..+ .|+..+- ...+--|.+
T Consensus 211 ~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~-------h~adVl~Lav~~~~d--~vfsaGv-------d~~ii~~~~ 274 (691)
T KOG2048|consen 211 LFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC-------HDADVLALAVADNED--RVFSAGV-------DPKIIQYSL 274 (691)
T ss_pred EEeecCcEEEecCCceEEEEcccCcchhhhhhh-------hhcceeEEEEcCCCC--eEEEccC-------CCceEEEEe
Confidence 334666666666777899999999875431111 123345566554322 3333321 122333444
Q ss_pred CC-C-CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeee--cCCCcccccCC
Q 046902 176 KT-N-SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQL--PLPDSVNVSYA 251 (393)
Q Consensus 176 ~t-~-~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i--~lP~~~~~~~~ 251 (393)
.+ . .|.....-. .+. ....++.+=+....-+ ..+..+++....+ +... ..|...-
T Consensus 275 ~~~~~~wv~~~~r~----------~h~--hdvrs~av~~~~l~sg----G~d~~l~i~~s~~-~~~~~h~~~~~~p---- 333 (691)
T KOG2048|consen 275 TTNKSEWVINSRRD----------LHA--HDVRSMAVIENALISG----GRDFTLAICSSRE-FKNMDHRQKNLFP---- 333 (691)
T ss_pred cCCccceeeecccc----------CCc--ccceeeeeecceEEec----ceeeEEEEccccc-cCchhhhcccccc----
Confidence 33 2 387653211 111 1122232223233322 2356777776655 2111 1222111
Q ss_pred ceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCC--CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-cEE
Q 046902 252 NVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVK--ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-EKL 328 (393)
Q Consensus 252 ~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~l 328 (393)
......+.-+.+|.+.- ....+.+|.+...-.. ..-.++..+... ......+-++.++|+.|-+++-. .++
T Consensus 334 ~~~~v~~a~~~~L~~~w--~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k----~~~nIs~~aiSPdg~~Ia~st~~~~~i 407 (691)
T KOG2048|consen 334 ASDRVSVAPENRLLVLW--KAHGVDLWRLGSVILQGEYNYIHLLKLFTK----EKENISCAAISPDGNLIAISTVSRTKI 407 (691)
T ss_pred ccceeecCccceEEEEe--ccccccceeccCcccccccChhhheeeecC----CccceeeeccCCCCCEEEEeeccceEE
Confidence 00112233344554443 3347889998743111 122333333332 22356677888999988887643 245
Q ss_pred EEEECCC
Q 046902 329 VWFDLET 335 (393)
Q Consensus 329 ~~yd~~t 335 (393)
+...++.
T Consensus 408 y~L~~~~ 414 (691)
T KOG2048|consen 408 YRLQPDP 414 (691)
T ss_pred EEeccCc
Confidence 5555554
No 134
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=48.74 E-value=1.3e+02 Score=30.02 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=26.3
Q ss_pred cEEeeeeeceEEEeeCCceEEEEeccccceec
Q 046902 93 TEVLGSCNGLIALCNSVQELALFNPSTRKLKT 124 (393)
Q Consensus 93 ~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~ 124 (393)
..-+..+||||++....+.+-.|+|-+++...
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhhe
Confidence 34467899999999878889999999987554
No 135
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=48.57 E-value=3.3e+02 Score=28.25 Aligned_cols=110 Identities=14% Similarity=0.188 Sum_probs=69.0
Q ss_pred eeEeC--ceEEEeccCCCCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeec
Q 046902 207 GVLAG--GALHWVSPKSSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEH 283 (393)
Q Consensus 207 ~v~~~--G~lyw~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~ 283 (393)
.|.++ |-+-+.+.. ....|.+.++.+++.-.+- --++. ...-.....|.+.+....+. ++.||-+-+
T Consensus 440 cvavD~sGelV~AG~~--d~F~IfvWS~qTGqllDiLsGHEgP------Vs~l~f~~~~~~LaS~SWDk-TVRiW~if~- 509 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQ--DSFEIFVWSVQTGQLLDILSGHEGP------VSGLSFSPDGSLLASGSWDK-TVRIWDIFS- 509 (893)
T ss_pred EEEEcCCCCEEEeecc--ceEEEEEEEeecCeeeehhcCCCCc------ceeeEEccccCeEEeccccc-eEEEEEeec-
Confidence 45555 777666543 3467999999988776542 22111 11112234666555555544 999998774
Q ss_pred CCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCC
Q 046902 284 AVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETN 336 (393)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~ 336 (393)
+|..+.++.... -..-+.+.|+|+.|-+.+-++.+-.||.+..
T Consensus 510 ----s~~~vEtl~i~s------dvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 510 ----SSGTVETLEIRS------DVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred ----cCceeeeEeecc------ceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 577888888654 2345666778888888776666777777654
No 136
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=46.55 E-value=2.1e+02 Score=25.39 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=90.1
Q ss_pred CCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEcccc
Q 046902 108 SVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNL 186 (393)
Q Consensus 108 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~ 186 (393)
.+..+-+|--.||.+.. ++-+. . ... .+-..|.. |.+++. ....+.+|+.+++.=..+..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~d--s----qVN--rLeiTpdk---~~LAaa-------~~qhvRlyD~~S~np~Pv~t- 78 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPD--S----QVN--RLEITPDK---KDLAAA-------GNQHVRLYDLNSNNPNPVAT- 78 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCc--c----cee--eEEEcCCc---chhhhc-------cCCeeEEEEccCCCCCceeE-
Confidence 45567788888887543 44443 1 111 23322221 222222 23568899998875332221
Q ss_pred CcccccccccccccccccCc--eeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCCe
Q 046902 187 PRFLRDFYDYLYHSLFRKGY--GVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEGC 263 (393)
Q Consensus 187 p~~~~~~~~~~~~~~~~~~~--~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G~ 263 (393)
+......-. +..++|. |+... ++...+-..|+.+-.... ++.|..+. ..-+-.-++.
T Consensus 79 -----------~e~h~kNVtaVgF~~dgr--WMyTg-seDgt~kIWdlR~~~~qR~~~~~spVn------~vvlhpnQte 138 (311)
T KOG0315|consen 79 -----------FEGHTKNVTAVGFQCDGR--WMYTG-SEDGTVKIWDLRSLSCQRNYQHNSPVN------TVVLHPNQTE 138 (311)
T ss_pred -----------EeccCCceEEEEEeecCe--EEEec-CCCceEEEEeccCcccchhccCCCCcc------eEEecCCcce
Confidence 111111112 2335554 44332 234678889988855544 34443332 1122222444
Q ss_pred EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc
Q 046902 264 LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 337 (393)
Q Consensus 264 L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~ 337 (393)
|... +....+.||-|.+.. =. +.+-++. ....+-+.+.++|..+.-..+.+.++++++-+++
T Consensus 139 Lis~--dqsg~irvWDl~~~~----c~--~~liPe~----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 139 LISG--DQSGNIRVWDLGENS----CT--HELIPED----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred EEee--cCCCcEEEEEccCCc----cc--cccCCCC----CcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 4443 334489999988631 01 1111111 1135567788888766655555678999988754
No 137
>PF13013 F-box-like_2: F-box-like domain
Probab=46.32 E-value=5 Score=30.46 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeeccc
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSK 30 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK 30 (393)
+.+||+||+..|+......++...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 45799999999999998887765555555
No 138
>PRK01742 tolB translocation protein TolB; Provisional
Probab=45.98 E-value=2.8e+02 Score=26.69 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=73.0
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCc
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 245 (393)
...+.+++..++.-+.+...+. . .......-+|. +.+.... +....|..+|+.+.....+.-...
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g----------~---~~~~~wSPDG~~La~~~~~-~g~~~Iy~~d~~~~~~~~lt~~~~ 292 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRG----------H---NGAPAFSPDGSRLAFASSK-DGVLNIYVMGANGGTPSQLTSGAG 292 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCC----------c---cCceeECCCCCEEEEEEec-CCcEEEEEEECCCCCeEeeccCCC
Confidence 3467788888776655543331 0 01112223453 4444322 223457888988776655432111
Q ss_pred ccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 246 VNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
. ...+.. .-+|+..++.........||.++..+. ... .+.... . ...+.++|+.|++....
T Consensus 293 ~-----~~~~~w-SpDG~~i~f~s~~~g~~~I~~~~~~~~---~~~--~l~~~~-------~-~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 293 N-----NTEPSW-SPDGQSILFTSDRSGSPQVYRMSASGG---GAS--LVGGRG-------Y-SAQISADGKTLVMINGD 353 (429)
T ss_pred C-----cCCEEE-CCCCCEEEEEECCCCCceEEEEECCCC---CeE--EecCCC-------C-CccCCCCCCEEEEEcCC
Confidence 1 011122 235654333333334789999985331 121 122110 1 23567788888776554
Q ss_pred cEEEEEECCCCcEEEE
Q 046902 326 EKLVWFDLETNSLRTV 341 (393)
Q Consensus 326 ~~l~~yd~~t~~~~~v 341 (393)
.++.+|+.+++.+.+
T Consensus 354 -~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 354 -NVVKQDLTSGSTEVL 368 (429)
T ss_pred -CEEEEECCCCCeEEe
Confidence 588899999987755
No 139
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=44.88 E-value=2.3e+02 Score=25.37 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=76.5
Q ss_pred CccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCc-eeeeecCCC
Q 046902 166 DDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAE-EFYQLPLPD 244 (393)
Q Consensus 166 ~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e-~~~~i~lP~ 244 (393)
....+..|++.+++=.....+|. . .....-..+++.+|-++.. ....+.||..+- .-..++.|.
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~----------~--~FgEGit~~~d~l~qLTWk---~~~~f~yd~~tl~~~~~~~y~~ 130 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPP----------R--YFGEGITILGDKLYQLTWK---EGTGFVYDPNTLKKIGTFPYPG 130 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TT----------T----EEEEEEETTEEEEEESS---SSEEEEEETTTTEEEEEEE-SS
T ss_pred CcEEEEEEECCCCcEEEEEECCc----------c--ccceeEEEECCEEEEEEec---CCeEEEEccccceEEEEEecCC
Confidence 56789999999987554445551 1 1223345689999999876 468999999753 223344542
Q ss_pred cccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc
Q 046902 245 SVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR 324 (393)
Q Consensus 245 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~ 324 (393)
.+ ..|+..+..|.|..+.. .|+.++. .....+.+|.............-+-+. + +.|+-..-
T Consensus 131 ------EG--WGLt~dg~~Li~SDGS~----~L~~~dP----~~f~~~~~i~V~~~g~pv~~LNELE~i-~-G~IyANVW 192 (264)
T PF05096_consen 131 ------EG--WGLTSDGKRLIMSDGSS----RLYFLDP----ETFKEVRTIQVTDNGRPVSNLNELEYI-N-GKIYANVW 192 (264)
T ss_dssp ------S----EEEECSSCEEEE-SSS----EEEEE-T----TT-SEEEEEE-EETTEE---EEEEEEE-T-TEEEEEET
T ss_pred ------cc--eEEEcCCCEEEEECCcc----ceEEECC----cccceEEEEEEEECCEECCCcEeEEEE-c-CEEEEEeC
Confidence 22 25666666666655432 3444552 234455555543211111111112222 4 46776643
Q ss_pred -CcEEEEEECCCCcEEEE
Q 046902 325 -REKLVWFDLETNSLRTV 341 (393)
Q Consensus 325 -~~~l~~yd~~t~~~~~v 341 (393)
...++..|++|+++..+
T Consensus 193 ~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp TSSEEEEEETTT-BEEEE
T ss_pred CCCeEEEEeCCCCeEEEE
Confidence 34799999999998765
No 140
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.57 E-value=3.7e+02 Score=27.69 Aligned_cols=101 Identities=11% Similarity=0.209 Sum_probs=51.4
Q ss_pred cEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCc
Q 046902 225 SVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSF 304 (393)
Q Consensus 225 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 304 (393)
..|...|+.+.+-. +|..-....+.......+.++...+... ...-+.+|.++...--.+|.-.+.-+
T Consensus 40 d~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa~He~P-------- 107 (775)
T KOG0319|consen 40 DRVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKAIHEAP-------- 107 (775)
T ss_pred ceEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHhhccCCC--------
Confidence 47889999988775 3322211011111122233333333333 33489999998643235675544222
Q ss_pred ceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 305 LFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 305 ~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
...+++.+.|..+--...++.+-++|.+.+...
T Consensus 108 --vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 108 --VITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred --eEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 234566665532222223456888888877643
No 141
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=43.86 E-value=3.4e+02 Score=26.97 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=79.9
Q ss_pred eeceEEEeeC-----------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCc
Q 046902 99 CNGLIALCNS-----------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDD 167 (393)
Q Consensus 99 ~~GLl~~~~~-----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 167 (393)
..||||+..+ ...++..+-- ++-...|-.. .-..+.+.+.+++.+|-||... -.
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k-------~GPVhdv~W~~s~~EF~VvyGf-------MP 293 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLK-------EGPVHDVTWSPSGREFAVVYGF-------MP 293 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCC-------CCCceEEEECCCCCEEEEEEec-------cc
Confidence 4678887651 2346666555 5555555443 1234567788888888887654 35
Q ss_pred cEEEEEEeCCCCeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCc
Q 046902 168 VEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDS 245 (393)
Q Consensus 168 ~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 245 (393)
..+-||+++-+-=-. +|++.+ ..++ -+|.+-.+++-++.+..|.++|+.+ ...|.-+..
T Consensus 294 Akvtifnlr~~~v~d---f~egpR--------------N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a 354 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVFD---FPEGPR--------------NTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKA 354 (566)
T ss_pred ceEEEEcCCCCEeEe---CCCCCc--------------cceEECCCCCEEEEeecCCCCCceEEEeccc--hhhcccccc
Confidence 678888887653222 222111 1122 2355555555566778899999988 334433333
Q ss_pred ccccCCceeEEEEEe--CCeEEEEEEcC-----CCeEEEEEEe
Q 046902 246 VNVSYANVHVDVGSL--EGCLCVFRFYN-----LVYVDMWMMK 281 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~--~G~L~~~~~~~-----~~~~~iW~l~ 281 (393)
.. ..+.+. +|.-+|..... ++.+.||--.
T Consensus 355 ~~-------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 355 AN-------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CC-------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 21 123333 67666655432 3478888754
No 142
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.42 E-value=2.7e+02 Score=25.52 Aligned_cols=215 Identities=17% Similarity=0.198 Sum_probs=107.5
Q ss_pred eEEEeeCC-ceEEEEecccccee-ccCCCCCCCCCCCCceEEEEe-eeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 102 LIALCNSV-QELALFNPSTRKLK-TLPLPPCLVGFPSAFTFYGFG-QDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 102 Ll~~~~~~-~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~g-~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
.+.+...+ ..++|++|.|++.. .+++++ ....+|=| |.+.. +.+...+.. .+...-.+-||+.. +
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~-------gRHFyGHg~fs~dG---~~LytTEnd-~~~g~G~IgVyd~~-~ 86 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPP-------GRHFYGHGVFSPDG---RLLYTTEND-YETGRGVIGVYDAA-R 86 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCC-------CCEEecCEEEcCCC---CEEEEeccc-cCCCcEEEEEEECc-C
Confidence 44444433 46899999999865 444444 11222211 22222 222222211 12245678899988 5
Q ss_pred CeEEccccCccccccccccccc--ccccCceeEeCceEEEeccC-------CCCCcEEEEEECCCcee-eeecCCCcccc
Q 046902 179 SWRRISNLPRFLRDFYDYLYHS--LFRKGYGVLAGGALHWVSPK-------SSTRSVIVAFDLVAEEF-YQLPLPDSVNV 248 (393)
Q Consensus 179 ~W~~~~~~p~~~~~~~~~~~~~--~~~~~~~v~~~G~lyw~~~~-------~~~~~~il~fD~~~e~~-~~i~lP~~~~~ 248 (393)
+.+.+...+..-..+ ... ......=|+.||=+.=.... ......+.-+|..+.+. ....+|+...
T Consensus 87 ~~~ri~E~~s~GIGP----Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~- 161 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGP----HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH- 161 (305)
T ss_pred CcEEEeEecCCCcCh----hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc-
Confidence 555554433111100 111 11122346677766433111 22345688888887774 4467887653
Q ss_pred cCCceeEEEEE-eCCeEEEEEEcCCC------eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE
Q 046902 249 SYANVHVDVGS-LEGCLCVFRFYNLV------YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 249 ~~~~~~~~l~~-~~G~L~~~~~~~~~------~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l 321 (393)
... ...|+. -+|.+++...++.. -+-++.... . .....++...+.........+++..+|+.|.+
T Consensus 162 -~lS-iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-----~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 162 -QLS-IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-----A-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred -ccc-eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-----c-ceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 112 224444 36777776655321 122222221 1 11122221111111124567888888887777
Q ss_pred EEc-CcEEEEEECCCCcEEEE
Q 046902 322 EVR-REKLVWFDLETNSLRTV 341 (393)
Q Consensus 322 ~~~-~~~l~~yd~~t~~~~~v 341 (393)
.+. ++.+.++|..|+++...
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred ECCCCCEEEEEECCCCCEeec
Confidence 653 45799999999998765
No 143
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=41.96 E-value=41 Score=22.49 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.8
Q ss_pred EEEEEECCCCcEEEE
Q 046902 327 KLVWFDLETNSLRTV 341 (393)
Q Consensus 327 ~l~~yd~~t~~~~~v 341 (393)
+++.||++|+++..+
T Consensus 42 KIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 42 KIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEE
Confidence 799999999999877
No 144
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=41.89 E-value=1.1e+02 Score=27.41 Aligned_cols=99 Identities=17% Similarity=0.277 Sum_probs=57.2
Q ss_pred cEEEEEECCCceeeeecCCCcccccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCC
Q 046902 225 SVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRS 303 (393)
Q Consensus 225 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 303 (393)
..+-+.|+.+-+....-+ .. .++.-.+.+ -||.||..+..+. .+-+|-|.+- . ..++++...
T Consensus 172 ktvKvWnl~~~~l~~~~~-gh-----~~~v~t~~vSpDGslcasGgkdg-~~~LwdL~~~---k---~lysl~a~~---- 234 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFI-GH-----SGYVNTVTVSPDGSLCASGGKDG-EAMLWDLNEG---K---NLYSLEAFD---- 234 (315)
T ss_pred ceEEEEccCCcchhhccc-cc-----cccEEEEEECCCCCEEecCCCCc-eEEEEEccCC---c---eeEeccCCC----
Confidence 356666766654433221 11 122223333 4999999876655 9999999962 2 255555422
Q ss_pred cceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc-EEEEEE
Q 046902 304 FLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS-LRTVKI 343 (393)
Q Consensus 304 ~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~-~~~v~~ 343 (393)
....++|.++. ..+..-.+..+-.+|++++. +..+..
T Consensus 235 --~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 235 --IVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred --eEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccc
Confidence 45667888864 33333334459999999986 334433
No 145
>PRK03629 tolB translocation protein TolB; Provisional
Probab=41.82 E-value=3.3e+02 Score=26.28 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=93.3
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
.+++|+|.-....+.|-... .......+.|..+ +++.+. .. .....+.+++..++.-+.+...+.
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~--------~~~~~p~wSPDG~--~la~~s-~~---~g~~~i~i~dl~~G~~~~l~~~~~- 243 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSP--------QPLMSPAWSPDGS--KLAYVT-FE---SGRSALVIQTLANGAVRQVASFPR- 243 (429)
T ss_pred eeEEEEcCCCCCCEEeecCC--------CceeeeEEcCCCC--EEEEEE-ec---CCCcEEEEEECCCCCeEEccCCCC-
Confidence 46888877655444432211 1123345555443 222222 11 123567788888877666554431
Q ss_pred cccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
. .......-+| .+++.... .....|..+|+.+.....+.-..... . .+.. .-+|+-.++.
T Consensus 244 ---------~---~~~~~~SPDG~~La~~~~~-~g~~~I~~~d~~tg~~~~lt~~~~~~---~--~~~w-SPDG~~I~f~ 304 (429)
T PRK03629 244 ---------H---NGAPAFSPDGSKLAFALSK-TGSLNLYVMDLASGQIRQVTDGRSNN---T--EPTW-FPDSQNLAYT 304 (429)
T ss_pred ---------C---cCCeEECCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEccCCCCCc---C--ceEE-CCCCCEEEEE
Confidence 0 0111223355 46665432 12246889999887766553211110 1 1111 2255533333
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v 341 (393)
.......+||.++-.+ ..-.. +.... .......+.++|+.|++.... ..++.+|+++++.+.+
T Consensus 305 s~~~g~~~Iy~~d~~~--g~~~~---lt~~~-----~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 305 SDQAGRPQVYKVNING--GAPQR---ITWEG-----SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 370 (429)
T ss_pred eCCCCCceEEEEECCC--CCeEE---eecCC-----CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe
Confidence 3333367889887533 22222 21110 011234567788888775432 3588999999988876
No 146
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.60 E-value=2e+02 Score=24.86 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=41.1
Q ss_pred EEEEeCCcEEEEEEcCcEEEEEECCCCcEEEEEEecCCCCeeeeEEEEeccccCCCCCCCCCCCCCccccccchHH
Q 046902 310 LGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDFVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEK 385 (393)
Q Consensus 310 ~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
..+..+|- .++...++..|.||.+-+.|.+|.- . -++...-|..++.+...........+..+++...++.
T Consensus 72 ~~lt~~G~-PiV~lsng~~y~y~~~L~~W~~vsd---~-w~~~~S~~~~~~~~~~~~~~~~~g~l~~lq~~~~~~~ 142 (219)
T PF07569_consen 72 CSLTSNGV-PIVTLSNGDSYSYSPDLGCWIRVSD---S-WWAIGSQYWDSLPSSNSSRNISSGPLASLQRKTNNEA 142 (219)
T ss_pred EEEcCCCC-EEEEEeCCCEEEeccccceeEEecc---c-hhhhhcccccccCcccccccccCCcHHHHHhhcchhh
Confidence 44555665 4444444569999999999999832 1 1344455666665443332444445555555554443
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=40.49 E-value=4.8e+02 Score=27.73 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=36.2
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 337 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~ 337 (393)
+|.+..+..... .+.||.+++......|..+..-. ......++.-++.+++|+.+.+...++.+..|+.++-+
T Consensus 149 ~~~fLAvss~dG-~v~iw~~~~~~~~~tl~~v~k~n---~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 149 KGNFLAVSSCDG-KVQIWDLQDGILSKTLTGVDKDN---EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred CCCEEEEEecCc-eEEEEEcccchhhhhcccCCccc---cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 444444443333 78888888632233444432111 00111234445666666666665545557777666544
No 148
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=40.06 E-value=2.5e+02 Score=28.04 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=58.0
Q ss_pred eEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEE
Q 046902 213 ALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTK 291 (393)
Q Consensus 213 ~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~ 291 (393)
-||..+.. ..|..||++.++|-. +..-... -..+.+.+++|-|++-.. ...++.|-..+- +.
T Consensus 147 Dly~~gsg----~evYRlNLEqGrfL~P~~~~~~~-----lN~v~in~~hgLla~Gt~--~g~VEfwDpR~k------sr 209 (703)
T KOG2321|consen 147 DLYLVGSG----SEVYRLNLEQGRFLNPFETDSGE-----LNVVSINEEHGLLACGTE--DGVVEFWDPRDK------SR 209 (703)
T ss_pred cEEEeecC----cceEEEEcccccccccccccccc-----ceeeeecCccceEEeccc--CceEEEecchhh------hh
Confidence 45555443 569999999998843 3221111 113456666776655432 237888865531 12
Q ss_pred EEEeeCCCC----CCC--cceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEE
Q 046902 292 LFSVQEPTP----TRS--FLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 292 ~~~i~~~~~----~~~--~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v 341 (393)
+.+++...- ... ..-...+.+..+|=.+-+.+..+.++.||+.+.+=-.+
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 222222110 011 11233445544453344555566799999998764433
No 149
>PTZ00420 coronin; Provisional
Probab=39.73 E-value=2e+02 Score=29.09 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcE
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSL 338 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~ 338 (393)
+|...++....+..+.||-+.. -.....+.... ...-+.+.++|..+.....++.+..||+.+++.
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~t------g~~~~~i~~~~------~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIEN------EKRAFQINMPK------KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCC------CcEEEEEecCC------cEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
No 150
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.96 E-value=1.2e+02 Score=27.67 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=41.0
Q ss_pred cCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEE
Q 046902 270 YNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 270 ~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v 341 (393)
.++..+.||.|..-. +.+.+|.... ...-+++...+.+|-+.+++..+-.||+..+.+-++
T Consensus 375 SDDrTvKvWdLrNMR-----splATIRtdS------~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR-----SPLATIRTDS------PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred CCCceEEEeeecccc-----CcceeeecCC------ccceeEeecCCceEEeccCCceEEEEecCCCccccC
Confidence 344588999988622 3445555432 133456665555777777777899999999988776
No 151
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=38.17 E-value=14 Score=32.63 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHhccCC-ccceeeeeecccchhhhcCChHH
Q 046902 2 SKKIPLDIITGIFCRQP-VKSLLRFRCVSKTCCSLIDSQDF 41 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~s~~F 41 (393)
..+||.+++.+||.||| -.+|..+..|--.-..++.+...
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~i 242 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRI 242 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHH
Confidence 46899999999999999 78998888876666666665544
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=37.93 E-value=2.4e+02 Score=26.78 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=41.0
Q ss_pred CCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEEE
Q 046902 272 LVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVK 342 (393)
Q Consensus 272 ~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~ 342 (393)
+..+.||-..- + + -+.+++.+. ...-+.+..||..+.-..+++++-++|+.++++..-.
T Consensus 153 Dn~v~iWnv~t-g--e---ali~l~hpd------~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 153 DNTVSIWNVGT-G--E---ALITLDHPD------MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred CceEEEEeccC-C--c---eeeecCCCC------eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 34889998874 1 1 223344322 3556778888887777777889999999999876654
No 153
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=36.46 E-value=4.2e+02 Score=25.87 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=97.3
Q ss_pred eeeceEEEee-CCceEEEEeccccce--eccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEE
Q 046902 98 SCNGLIALCN-SVQELALFNPSTRKL--KTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYS 174 (393)
Q Consensus 98 s~~GLl~~~~-~~~~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vys 174 (393)
+.+|-.+... .+..+.+|++.+.+. ...+ . .+......+.|.+... .++... ....+.|++
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~-----~h~~~v~~~~fs~d~~--~l~s~s-------~D~tiriwd 231 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKSNLLREL--S-----GHTRGVSDVAFSPDGS--YLLSGS-------DDKTLRIWD 231 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccchhhccc--c-----ccccceeeeEECCCCc--EEEEec-------CCceEEEee
Confidence 3444433332 456788999966652 2221 1 1223344555665544 222222 356788888
Q ss_pred eCCC--CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCC
Q 046902 175 LKTN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYA 251 (393)
Q Consensus 175 s~t~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~ 251 (393)
...+ .=+.+.+.+ .....-...-.|.+..-+.. ...|-..|+.+.+... +.. .. +
T Consensus 232 ~~~~~~~~~~l~gH~-------------~~v~~~~f~p~g~~i~Sgs~---D~tvriWd~~~~~~~~~l~~--hs----~ 289 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHS-------------TYVTSVAFSPDGNLLVSGSD---DGTVRIWDVRTGECVRKLKG--HS----D 289 (456)
T ss_pred ccCCCeEEEEecCCC-------------CceEEEEecCCCCEEEEecC---CCcEEEEeccCCeEEEeeec--cC----C
Confidence 8433 223332222 01111122233434433322 4578889998844433 222 11 1
Q ss_pred ceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEE--EEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEE
Q 046902 252 NVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKL--FSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLV 329 (393)
Q Consensus 252 ~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~--~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~ 329 (393)
........-+|.+.+.... +..+.||-+.. |.+. ..+.-.. . .. ...-+.++++|+.++....+..+.
T Consensus 290 ~is~~~f~~d~~~l~s~s~-d~~i~vwd~~~------~~~~~~~~~~~~~-~-~~-~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASY-DGTIRVWDLET------GSKLCLKLLSGAE-N-SA-PVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred ceEEEEECCCCCEEEEcCC-CccEEEEECCC------CceeeeecccCCC-C-CC-ceeEEEECCCCcEEEEecCCCeEE
Confidence 1121222337777776644 44999998774 3322 2222111 0 00 134456678988888777776799
Q ss_pred EEECCCCcEE
Q 046902 330 WFDLETNSLR 339 (393)
Q Consensus 330 ~yd~~t~~~~ 339 (393)
.||+.+.+.-
T Consensus 360 ~w~l~~~~~~ 369 (456)
T KOG0266|consen 360 LWDLRSGKSV 369 (456)
T ss_pred EEEccCCcce
Confidence 9999976533
No 154
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=36.42 E-value=4.9e+02 Score=26.71 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=49.9
Q ss_pred EEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEE-EeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEE
Q 046902 215 HWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVG-SLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLF 293 (393)
Q Consensus 215 yw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~ 293 (393)
++++.. +...|.-.|+..|....+.-- ..+-..+. ..++.+.+.++.+. +++||.-+ +.+.
T Consensus 192 ~flScs--NDg~Ir~w~~~ge~l~~~~gh-------tn~vYsis~~~~~~~Ivs~gEDr-tlriW~~~--------e~~q 253 (745)
T KOG0301|consen 192 HFLSCS--NDGSIRLWDLDGEVLLEMHGH-------TNFVYSISMALSDGLIVSTGEDR-TLRIWKKD--------ECVQ 253 (745)
T ss_pred CeEeec--CCceEEEEeccCceeeeeecc-------ceEEEEEEecCCCCeEEEecCCc-eEEEeecC--------ceEE
Confidence 444433 235677777766665554421 22222333 45677777776554 99999865 3445
Q ss_pred EeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEE
Q 046902 294 SVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFD 332 (393)
Q Consensus 294 ~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd 332 (393)
.|.++.. ...-..+.+|||+++ ...++.+.+|-
T Consensus 254 ~I~lPtt-----siWsa~~L~NgDIvv-g~SDG~VrVfT 286 (745)
T KOG0301|consen 254 VITLPTT-----SIWSAKVLLNGDIVV-GGSDGRVRVFT 286 (745)
T ss_pred EEecCcc-----ceEEEEEeeCCCEEE-eccCceEEEEE
Confidence 5555431 133455566777444 33344444443
No 155
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=35.77 E-value=2.7e+02 Score=23.57 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=86.2
Q ss_pred eeeec-eEEEeeCCceEEEEecccccee-ccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEE
Q 046902 97 GSCNG-LIALCNSVQELALFNPSTRKLK-TLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYS 174 (393)
Q Consensus 97 ~s~~G-Ll~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vys 174 (393)
-+.+| .++....+..+.+||..+++.. .+... ......+.+.+. + +++.... ....+.+|+
T Consensus 59 ~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~--------~~~i~~~~~~~~-~--~~~~~~~------~~~~i~~~~ 121 (289)
T cd00200 59 ASADGTYLASGSSDKTIRLWDLETGECVRTLTGH--------TSYVSSVAFSPD-G--RILSSSS------RDKTIKVWD 121 (289)
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc--------CCcEEEEEEcCC-C--CEEEEec------CCCeEEEEE
Confidence 33444 5555555778999999875322 22211 112344556554 2 2333331 134678888
Q ss_pred eCCCCeEE-ccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCcee-eeecCCCcccccC
Q 046902 175 LKTNSWRR-ISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPDSVNVSY 250 (393)
Q Consensus 175 s~t~~W~~-~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~ 250 (393)
..++.-.. +.... .....+. -++.+...+. ....|..||+.+.+. ..+......
T Consensus 122 ~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~---- 179 (289)
T cd00200 122 VETGKCLTTLRGHT---------------DWVNSVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTGHTGE---- 179 (289)
T ss_pred CCCcEEEEEeccCC---------------CcEEEEEEcCcCCEEEEEc---CCCcEEEEEccccccceeEecCccc----
Confidence 87543221 11100 0001111 1133333322 125688888875432 223322111
Q ss_pred CceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEE
Q 046902 251 ANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLV 329 (393)
Q Consensus 251 ~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~ 329 (393)
.. .+.. -+|...++... ...+.+|-+.. ...+..+.... ....-+.+.+++..++....+..+.
T Consensus 180 --i~-~~~~~~~~~~l~~~~~-~~~i~i~d~~~------~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~i~ 244 (289)
T cd00200 180 --VN-SVAFSPDGEKLLSSSS-DGTIKLWDLST------GKCLGTLRGHE-----NGVNSVAFSPDGYLLASGSEDGTIR 244 (289)
T ss_pred --cc-eEEECCCcCEEEEecC-CCcEEEEECCC------CceecchhhcC-----CceEEEEEcCCCcEEEEEcCCCcEE
Confidence 11 2222 24434444433 34888888764 11222221100 0123355566655444444356799
Q ss_pred EEECCCCcEE
Q 046902 330 WFDLETNSLR 339 (393)
Q Consensus 330 ~yd~~t~~~~ 339 (393)
.||..+++..
T Consensus 245 i~~~~~~~~~ 254 (289)
T cd00200 245 VWDLRTGECV 254 (289)
T ss_pred EEEcCCceeE
Confidence 9999876543
No 156
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=35.76 E-value=1.2e+02 Score=29.28 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCc---EEEEEECCCCc
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE---KLVWFDLETNS 337 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~yd~~t~~ 337 (393)
+|+-.++........+||+++-.+ +..+.+ . ...+ ....=.+.++|..|++..+.. .++.||+++++
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~-~~~~~L----t--~~~g---i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDG-KNLPRL----T--NGFG---INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCC-Ccceec----c--cCCc---cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 555444444444589999999765 232321 1 1100 111224467898888876432 69999999999
Q ss_pred EEEEEE
Q 046902 338 LRTVKI 343 (393)
Q Consensus 338 ~~~v~~ 343 (393)
.+.+..
T Consensus 318 ~~riT~ 323 (425)
T COG0823 318 VTRLTF 323 (425)
T ss_pred eeEeec
Confidence 988854
No 157
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.09 E-value=2.2e+02 Score=25.86 Aligned_cols=67 Identities=13% Similarity=0.255 Sum_probs=44.0
Q ss_pred CccEEEEEEeCCCCeEEccc-cCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecC
Q 046902 166 DDVEVEVYSLKTNSWRRISN-LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPL 242 (393)
Q Consensus 166 ~~~~~~Vyss~t~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~l 242 (393)
....+.+|+..+.+|..... +.... ..+......-+++.|.+-.-. .....+..||..+.+|..+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-------~~l~~~~~~~Llv~G~ft~~~---~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTV-------TDLQWASNNQLLVGGNFTLNG---TNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEE-------EEEEEecCCEEEEEEeeEECC---CCceeEEEEecCCCeeeecCC
Confidence 46788999999999998753 22100 112222345566777665432 135789999999999988754
No 158
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=33.46 E-value=2.6e+02 Score=27.43 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=57.4
Q ss_pred CcEEEEEECCCc--eeeeecCCCcccccCCce-eEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCC
Q 046902 224 RSVIVAFDLVAE--EFYQLPLPDSVNVSYANV-HVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTP 300 (393)
Q Consensus 224 ~~~il~fD~~~e--~~~~i~lP~~~~~~~~~~-~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (393)
...|-+.|+..- ++-.-.|+... .+++ +....--+|+-.++++... ++.||-|.... .+|... +
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~---rdnyiRSckL~pdgrtLivGGeas-tlsiWDLAapT--------prikae-l 505 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLN---RDNYIRSCKLLPDGRTLIVGGEAS-TLSIWDLAAPT--------PRIKAE-L 505 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccC---cccceeeeEecCCCceEEeccccc-eeeeeeccCCC--------cchhhh-c
Confidence 457888887643 22222333221 1222 2233445888777777644 99999998522 112110 0
Q ss_pred CCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 301 TRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 301 ~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
......+..+++.+|.++.|-+..++.+.+||+..+++-
T Consensus 506 tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 111113556777888766666666667888999887754
No 159
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=33.27 E-value=1.4e+02 Score=26.31 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=37.8
Q ss_pred eeeceEEEeeCCceEEEEeccccceecc--CCCCCCCCCCCCceEEEEeeeCCCCCeEEEE
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTL--PLPPCLVGFPSAFTFYGFGQDKINDDYKLVR 156 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 156 (393)
..+|.|.-.....++|..||.|+.-..+ .+.. ... .-..++|-|+|..+.-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~--~al--~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLT--VAL--SGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeeccccc--ccc--cCceEEEecCcccCcEEEEc
Confidence 4577776666678899999999986666 2222 111 22367788888888888774
No 160
>PTZ00421 coronin; Provisional
Probab=33.26 E-value=4.9e+02 Score=25.78 Aligned_cols=200 Identities=11% Similarity=0.057 Sum_probs=89.2
Q ss_pred ec-eEEEeeCCceEEEEeccccceeccCCCCCCCCCC-CCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 100 NG-LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFP-SAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 100 ~G-Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
+| +|.....+..+.|||-.++....-...+. .... +......+.|.|..+.+ ++... ....+.||+.++
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l-~~L~gH~~~V~~l~f~P~~~~i-LaSgs-------~DgtVrIWDl~t 157 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPI-VHLQGHTKKVGIVSFHPSAMNV-LASAG-------ADMVVNVWDVER 157 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcce-EEecCCCCcEEEEEeCcCCCCE-EEEEe-------CCCEEEEEECCC
Confidence 44 34434456678899876543211000000 0011 12223456666654332 22222 235688999887
Q ss_pred CCeEEccccCcccccccccccccccccCcee--EeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCcee
Q 046902 178 NSWRRISNLPRFLRDFYDYLYHSLFRKGYGV--LAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVH 254 (393)
Q Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v--~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~ 254 (393)
+.-.. .+. .+. ..-.++ .-+|.+-..+.. ...|-.+|+.+.+... +...... . ..
T Consensus 158 g~~~~--~l~----------~h~--~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg~~v~tl~~H~~~----~-~~ 215 (493)
T PTZ00421 158 GKAVE--VIK----------CHS--DQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDGTIVSSVEAHASA----K-SQ 215 (493)
T ss_pred CeEEE--EEc----------CCC--CceEEEEEECCCCEEEEecC---CCEEEEEECCCCcEEEEEecCCCC----c-ce
Confidence 64211 111 000 001112 124554444332 3578899998765322 2221111 0 01
Q ss_pred EEEEEeC-CeEEEEEEc--CCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEE
Q 046902 255 VDVGSLE-GCLCVFRFY--NLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVW 330 (393)
Q Consensus 255 ~~l~~~~-G~L~~~~~~--~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~ 330 (393)
..+...+ +.+..++.. .+..+.||-+.... ... ..+..... .......+.++++.+++... +..+.+
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--~p~---~~~~~d~~----~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--SPY---STVDLDQS----SALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--Cce---eEeccCCC----CceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 1111223 344333332 23489999876422 111 12221110 01112234567777777653 556888
Q ss_pred EECCCCcEE
Q 046902 331 FDLETNSLR 339 (393)
Q Consensus 331 yd~~t~~~~ 339 (393)
||+.+++..
T Consensus 287 wdl~~~~~~ 295 (493)
T PTZ00421 287 FELMNERLT 295 (493)
T ss_pred EEeeCCceE
Confidence 888887654
No 161
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=33.21 E-value=3.5e+02 Score=24.08 Aligned_cols=103 Identities=10% Similarity=0.071 Sum_probs=61.4
Q ss_pred CCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCC
Q 046902 223 TRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPT 301 (393)
Q Consensus 223 ~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (393)
+...|-+.|+.+..+....+|+... . --.|.+. +|+...+..... ..-+|.|-.......=+.++.+....
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~----~-i~sl~v~~dgsml~a~nnkG-~cyvW~l~~~~~~s~l~P~~k~~ah~-- 215 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDT----S-IQSLTVMPDGSMLAAANNKG-NCYVWRLLNHQTASELEPVHKFQAHN-- 215 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCc----c-eeeEEEcCCCcEEEEecCCc-cEEEEEccCCCccccceEhhheeccc--
Confidence 4568999999999999998987653 1 2244444 666555554444 88899987522112223333333211
Q ss_pred CCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCC
Q 046902 302 RSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETN 336 (393)
Q Consensus 302 ~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~ 336 (393)
+...-.-+++++..|.-+..++.+..++.++-
T Consensus 216 ---~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 216 ---GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ---ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 11112234567655555555667999999998
No 162
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=31.82 E-value=1.8e+02 Score=21.97 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=29.8
Q ss_pred CceEEEEeccccc-eeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEE
Q 046902 109 VQELALFNPSTRK-LKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVL 158 (393)
Q Consensus 109 ~~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 158 (393)
..+++..+|-+++ |... . ....+.+..|...+.|.|..+.
T Consensus 15 vA~v~~~~p~~~~~W~~~---~-------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 15 VAQVYQADPDTKRQWSPV---K-------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEEETTTSESEEES---S-------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEEcCCCCcEeeC---C-------eEEEEEEEEECCCCEEEEEEEE
Confidence 3578999999988 9865 2 2345678888888888887655
No 163
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=30.52 E-value=4.1e+02 Score=24.06 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=43.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN 185 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~ 185 (393)
..+++||+.+++|..+=..- .-....+.+. ++=+|+..+...........+-.|+..+.+|..+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i-------~G~V~~l~~~---~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGI-------SGTVTDLQWA---SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CEEEEEECCCCEeecCCCCc-------eEEEEEEEEe---cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 35899999999999754321 1123344444 234666666544333246778999999999988764
No 164
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.29 E-value=1e+02 Score=29.33 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=41.7
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
||.=++++.. +..+..|-++... .+.|+-+.. + ...-+++..||..+++...+.++..||.+++.=+
T Consensus 323 Dg~~~V~Gs~-dr~i~~wdlDgn~-~~~W~gvr~---~-------~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 323 DGFRFVTGSP-DRTIIMWDLDGNI-LGNWEGVRD---P-------KVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred CCceeEecCC-CCcEEEecCCcch-hhccccccc---c-------eeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 5555444444 3488888888643 467865432 1 2345677777777777666666777777776543
No 165
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.84 E-value=2.5e+02 Score=29.04 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=40.4
Q ss_pred eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 274 YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 274 ~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
.++||-..+..+ .-|..+.. ....+++.++|+..++++-.+....|+.+..+++.
T Consensus 433 KvRiWsI~d~~V-v~W~Dl~~-----------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 433 KVRLWSISDKKV-VDWNDLRD-----------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred ceEEeecCcCee-Eeehhhhh-----------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 889998876543 34755431 34567888899888888777778899999988764
No 166
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=28.53 E-value=4.7e+02 Score=24.02 Aligned_cols=109 Identities=9% Similarity=0.158 Sum_probs=46.9
Q ss_pred EEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEE
Q 046902 215 HWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLF 293 (393)
Q Consensus 215 yw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~ 293 (393)
-|+..+ ...|+.-.=.-++|..++++.... ... ..+.. -++...++.. .-.|++-.|.| .+|+.+.
T Consensus 74 g~ivG~---~g~ll~T~DgG~tW~~v~l~~~lp--gs~--~~i~~l~~~~~~l~~~----~G~iy~T~DgG--~tW~~~~ 140 (302)
T PF14870_consen 74 GWIVGE---PGLLLHTTDGGKTWERVPLSSKLP--GSP--FGITALGDGSAELAGD----RGAIYRTTDGG--KTWQAVV 140 (302)
T ss_dssp EEEEEE---TTEEEEESSTTSS-EE----TT-S--S-E--EEEEEEETTEEEEEET----T--EEEESSTT--SSEEEEE
T ss_pred eEEEcC---CceEEEecCCCCCcEEeecCCCCC--CCe--eEEEEcCCCcEEEEcC----CCcEEEeCCCC--CCeeEcc
Confidence 355543 234555555778999998765432 121 22333 3555555442 23566666644 6898764
Q ss_pred EeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEEEE
Q 046902 294 SVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 294 ~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~~ 343 (393)
.=... ...-+...++|..|.+...+.-+...|+....|+....
T Consensus 141 ~~~~g-------s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 141 SETSG-------SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp -S-----------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-
T ss_pred cCCcc-------eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc
Confidence 21111 11222334566555555444445567777666666643
No 167
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.50 E-value=5.6e+02 Score=24.62 Aligned_cols=114 Identities=12% Similarity=0.063 Sum_probs=58.1
Q ss_pred cEEEEEECCCceee-eecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCC
Q 046902 225 SVIVAFDLVAEEFY-QLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRS 303 (393)
Q Consensus 225 ~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 303 (393)
..|-.||.++..-+ .+..- ......-..-+|+++++..... ++.+|-+++ |..+..-. ...
T Consensus 376 ~~i~l~~~e~~~dr~lise~-------~~its~~iS~d~k~~LvnL~~q-ei~LWDl~e------~~lv~kY~----Ghk 437 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLISEE-------QPITSFSISKDGKLALVNLQDQ-EIHLWDLEE------NKLVRKYF----GHK 437 (519)
T ss_pred cceeeechhhhhhhcccccc-------CceeEEEEcCCCcEEEEEcccC-eeEEeecch------hhHHHHhh----ccc
Confidence 35666776655444 22221 1122122334888888886544 999999985 22211100 000
Q ss_pred cceeeEEEEEeCCc-EEEEE-EcCcEEEEEECCCCcEEEEEEecCCCC-eeeeEEEEec
Q 046902 304 FLFLRPLGYSRNGV-KLLLE-VRREKLVWFDLETNSLRTVKIDTHGLD-FVDTEICMAS 359 (393)
Q Consensus 304 ~~~~~~~~~~~~g~-~i~l~-~~~~~l~~yd~~t~~~~~v~~~~~~~~-~~~~~~y~~S 359 (393)
...+....+...++ ..+.. ..+.+++.++..+++.-.+ . .|.. ..+++.|-|-
T Consensus 438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~-L--sGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV-L--SGHSKTVNCVSWNPA 493 (519)
T ss_pred ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe-e--cCCcceeeEEecCCC
Confidence 11233333332222 33333 3456899999999886554 2 4544 4555555443
No 168
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=27.06 E-value=6.3e+02 Score=25.09 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=80.3
Q ss_pred CccEEEEEEeCCCCeEEcc---ccCcccccccccccccccccCce-eEeCceEEEeccC-CCCCcEEEEEECCCc--eee
Q 046902 166 DDVEVEVYSLKTNSWRRIS---NLPRFLRDFYDYLYHSLFRKGYG-VLAGGALHWVSPK-SSTRSVIVAFDLVAE--EFY 238 (393)
Q Consensus 166 ~~~~~~Vyss~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~-v~~~G~lyw~~~~-~~~~~~il~fD~~~e--~~~ 238 (393)
...+.+||+-.+++|-... +.|+. ....+ |+.+..+|.+++. ....+.=--|.+... .|.
T Consensus 55 iiDELHvYNTatnqWf~PavrGDiPpg-------------cAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 55 IIDELHVYNTATNQWFAPAVRGDIPPG-------------CAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWK 121 (830)
T ss_pred chhhhhhhccccceeecchhcCCCCCc-------------hhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHh
Confidence 4557899999999997643 33421 11223 3334466666542 001111112333333 445
Q ss_pred eec--CCCcccccCCceeEEEEEeCCeEEEEEEcCC------C-----eEEEEEEeec-CC-CCCeEEEEEeeCCCCCCC
Q 046902 239 QLP--LPDSVNVSYANVHVDVGSLEGCLCVFRFYNL------V-----YVDMWMMKEH-AV-KESWTKLFSVQEPTPTRS 303 (393)
Q Consensus 239 ~i~--lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~------~-----~~~iW~l~~~-~~-~~~W~~~~~i~~~~~~~~ 303 (393)
.+. .|.....-...........+.+-|+++.... + --++++|+-. |. .-.|.+--+-.... .++
T Consensus 122 rlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P-~pR 200 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP-PPR 200 (830)
T ss_pred hcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC-CCc
Confidence 442 1211100011112244555677777764321 1 1245555532 22 24587654433211 112
Q ss_pred cceeeEEEEEeCC---cEEEEEE-cC---cEEEEEECCCCcEEEEEEecCCCC
Q 046902 304 FLFLRPLGYSRNG---VKLLLEV-RR---EKLVWFDLETNSLRTVKIDTHGLD 349 (393)
Q Consensus 304 ~~~~~~~~~~~~g---~~i~l~~-~~---~~l~~yd~~t~~~~~v~~~~~~~~ 349 (393)
..+..++...+|+ ..+++.. .+ +.|...|++|-.|.+... .|.+
T Consensus 201 ESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~--~G~~ 251 (830)
T KOG4152|consen 201 ESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSL--SGVA 251 (830)
T ss_pred ccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccc--cCCC
Confidence 2345566665543 2233321 11 259999999999999977 5643
No 169
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=26.92 E-value=66 Score=23.06 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=15.2
Q ss_pred EEEEEECCCCcEEEEEE
Q 046902 327 KLVWFDLETNSLRTVKI 343 (393)
Q Consensus 327 ~l~~yd~~t~~~~~v~~ 343 (393)
.+.+||.+.+.|+.+.+
T Consensus 50 s~~yfDve~~~WRSFk~ 66 (83)
T PF10902_consen 50 SVRYFDVEKKGWRSFKI 66 (83)
T ss_pred eEEEEEeccCceeeeeh
Confidence 59999999999998865
No 170
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=26.85 E-value=4.8e+02 Score=23.63 Aligned_cols=138 Identities=13% Similarity=0.031 Sum_probs=82.7
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
+..+-+||-.+....++-.-. . ......+-|.|...+..++... ..-.+.|.++++-+=+. ..+
T Consensus 126 DkTiklwnt~g~ck~t~~~~~-----~-~~WVscvrfsP~~~~p~Ivs~s-------~DktvKvWnl~~~~l~~--~~~- 189 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDS-----H-REWVSCVRFSPNESNPIIVSAS-------WDKTVKVWNLRNCQLRT--TFI- 189 (315)
T ss_pred cceeeeeeecccEEEEEecCC-----C-cCcEEEEEEcCCCCCcEEEEcc-------CCceEEEEccCCcchhh--ccc-
Confidence 456889999998877765432 1 2344567788887677776654 34568888887754322 122
Q ss_pred ccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
.+........|..+|.+---++ ..+.++-.|+...+- ...++.... -..++..-.+..++.
T Consensus 190 ---------gh~~~v~t~~vSpDGslcasGg---kdg~~~LwdL~~~k~-lysl~a~~~------v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 190 ---------GHSGYVNTVTVSPDGSLCASGG---KDGEAMLWDLNEGKN-LYSLEAFDI------VNSLCFSPNRYWLCA 250 (315)
T ss_pred ---------cccccEEEEEECCCCCEEecCC---CCceEEEEEccCCce-eEeccCCCe------EeeEEecCCceeEee
Confidence 1222223345667777654433 356788899876554 222222211 236666677776666
Q ss_pred EcCCCeEEEEEEee
Q 046902 269 FYNLVYVDMWMMKE 282 (393)
Q Consensus 269 ~~~~~~~~iW~l~~ 282 (393)
..+. .+.||-++.
T Consensus 251 at~~-sIkIwdl~~ 263 (315)
T KOG0279|consen 251 ATAT-SIKIWDLES 263 (315)
T ss_pred ccCC-ceEEEeccc
Confidence 5544 899999985
No 171
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.37 E-value=4.7e+02 Score=24.59 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=40.4
Q ss_pred eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEE
Q 046902 263 CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 263 ~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v 341 (393)
..+.... .+..|.+|-+.- + ..+.++.-. ....+-+++++.|..|+-.-+++.|-+||+++++-...
T Consensus 305 ~~l~s~S-rDktIk~wdv~t-g-----~cL~tL~gh-----dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 305 QVLGSGS-RDKTIKIWDVST-G-----MCLFTLVGH-----DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cEEEeec-ccceEEEEeccC-C-----eEEEEEecc-----cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 3444443 445999998873 1 223333311 12456778888765555455566799999999875443
No 172
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=26.22 E-value=5.1e+02 Score=23.68 Aligned_cols=181 Identities=13% Similarity=0.135 Sum_probs=97.6
Q ss_pred CceEEEEecccc-ceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeE----Ec
Q 046902 109 VQELALFNPSTR-KLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWR----RI 183 (393)
Q Consensus 109 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~----~~ 183 (393)
+..++|||-.|. +...+|.+. .+...-+|.|+++ | |+-+ .....+-||+..+..=+ ..
T Consensus 76 DGklIvWDs~TtnK~haipl~s--------~WVMtCA~sPSg~-~--VAcG------GLdN~Csiy~ls~~d~~g~~~v~ 138 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPS--------SWVMTCAYSPSGN-F--VACG------GLDNKCSIYPLSTRDAEGNVRVS 138 (343)
T ss_pred CCeEEEEEcccccceeEEecCc--------eeEEEEEECCCCC-e--EEec------CcCceeEEEecccccccccceee
Confidence 557889998874 455565544 3445566778654 2 2221 13457889998754111 11
Q ss_pred cccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCC
Q 046902 184 SNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEG 262 (393)
Q Consensus 184 ~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G 262 (393)
..++ .+.. .-+..-+++ --|-++.. ......-.|+++.+-.. +.- .. .+-..+.|...++
T Consensus 139 r~l~----------gHtg-ylScC~f~d-D~~ilT~S--GD~TCalWDie~g~~~~~f~G---H~--gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 139 RELA----------GHTG-YLSCCRFLD-DNHILTGS--GDMTCALWDIETGQQTQVFHG---HT--GDVMSLSLSPSDG 199 (343)
T ss_pred eeec----------Cccc-eeEEEEEcC-CCceEecC--CCceEEEEEcccceEEEEecC---Cc--ccEEEEecCCCCC
Confidence 1122 1111 122233444 22333332 23456677887765443 221 11 2333456666688
Q ss_pred eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc
Q 046902 263 CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 337 (393)
Q Consensus 263 ~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~ 337 (393)
+.++-+..+. .-.||-+.+.. -+.++.-.. .-...+.+.|+|..+.-..++...-.||+...+
T Consensus 200 ntFvSg~cD~-~aklWD~R~~~------c~qtF~ghe-----sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 200 NTFVSGGCDK-SAKLWDVRSGQ------CVQTFEGHE-----SDINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred CeEEeccccc-ceeeeeccCcc------eeEeecccc-----cccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 8888887765 78889887521 112221110 124567778888766666566667788888754
No 173
>PLN02772 guanylate kinase
Probab=26.13 E-value=3.8e+02 Score=25.66 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=33.6
Q ss_pred EEEEEEEeecCCCCccEEEEEEeCCCCeEEcc--ccCcccccccccccccccccCceeEe-CceEEEeccC
Q 046902 153 KLVRVLHFKGNDGDDVEVEVYSLKTNSWRRIS--NLPRFLRDFYDYLYHSLFRKGYGVLA-GGALHWVSPK 220 (393)
Q Consensus 153 kVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~--~~p~~~~~~~~~~~~~~~~~~~~v~~-~G~lyw~~~~ 220 (393)
|+++++...........+++|+..++.|.... ..++ ..+...+++.+ ++.++.+...
T Consensus 36 k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-----------~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 36 KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP-----------KPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred EEEEEcccCCCccccceEEEEECCCCcEecccccCCCC-----------CCCCcceEEEECCceEEEEeCC
Confidence 55555543222224568999999999998764 2221 22344555656 5677777644
No 174
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=26.08 E-value=1.3e+02 Score=16.92 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=25.0
Q ss_pred eEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEE
Q 046902 289 WTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFD 332 (393)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd 332 (393)
|+.+.++.-.. ....-+.+.+++..|+-...++.+..||
T Consensus 1 g~~~~~~~~h~-----~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS-----SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS-----SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCC-----CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 55556555421 1245577778877777777777788776
No 175
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=25.50 E-value=4.4e+02 Score=26.11 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=24.8
Q ss_pred eeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEE
Q 046902 307 LRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 307 ~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v 341 (393)
...+++.++|..+....-.++++.||.++++...-
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN 524 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecc
Confidence 45678888876444444456899999999887543
No 176
>PRK10115 protease 2; Provisional
Probab=25.16 E-value=7.9e+02 Score=25.57 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=65.9
Q ss_pred EeCceEEEeccCCCCCcEEEEEECC-CceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCC
Q 046902 209 LAGGALHWVSPKSSTRSVIVAFDLV-AEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKE 287 (393)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~il~fD~~-~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~ 287 (393)
..++.+|...........|+..++. .++|+.+-.+... ... -.+...++.|.+...... .-.+++++-.+ .
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~----~~i-~~~~~~~~~l~~~~~~~g-~~~l~~~~~~~--~ 348 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPREN----IML-EGFTLFTDWLVVEERQRG-LTSLRQINRKT--R 348 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCC----CEE-EEEEEECCEEEEEEEeCC-EEEEEEEcCCC--C
Confidence 3456777776544445789999988 5788776544221 011 133445777777766544 55677775322 1
Q ss_pred CeEEEEEeeCCCCCCCcceeeEEEEE--eCCcEEEEEEcC----cEEEEEECCCCcEEEEE
Q 046902 288 SWTKLFSVQEPTPTRSFLFLRPLGYS--RNGVKLLLEVRR----EKLVWFDLETNSLRTVK 342 (393)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~~--~~g~~i~l~~~~----~~l~~yd~~t~~~~~v~ 342 (393)
....+.+... .....++.. .+++.+++...+ ..++.||+++++++.+.
T Consensus 349 ---~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 349 ---EVIGIAFDDP----AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred ---ceEEecCCCC----ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 1233332110 011112222 344566665432 46999999999887774
No 177
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=24.91 E-value=6.4e+02 Score=24.39 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=38.2
Q ss_pred ceEEEEecccccee-ccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC--CCeEEcc
Q 046902 110 QELALFNPSTRKLK-TLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT--NSWRRIS 184 (393)
Q Consensus 110 ~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t--~~W~~~~ 184 (393)
..+-|||++|++-. ..|..+ .+ ..-...-+++.+..+-|-+.........++.....+-|-..+ +.|.+++
T Consensus 245 ~~Igvw~~~t~q~~d~~~~s~--~d--sag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n~~~~W~~i~ 318 (465)
T KOG2714|consen 245 GKIGVWHAVTQQAQDVQPISS--YD--SAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRNTSGNWIEIA 318 (465)
T ss_pred ccccccchhhhceeeeeeccC--cc--ccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCCccceEEEec
Confidence 36899999999544 344333 11 112222345554443333333222222334566777787777 8898764
No 178
>PRK03629 tolB translocation protein TolB; Provisional
Probab=24.69 E-value=6.4e+02 Score=24.30 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=92.0
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
...++++|..+++...|...+ ... ....+.|..+ +++..... .....+.+++..++..+.+.....
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~------~~~--~~~~~SPDG~--~La~~~~~----~g~~~I~~~d~~tg~~~~lt~~~~ 287 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFP------RHN--GAPAFSPDGS--KLAFALSK----TGSLNLYVMDLASGQIRQVTDGRS 287 (429)
T ss_pred CcEEEEEECCCCCeEEccCCC------CCc--CCeEECCCCC--EEEEEEcC----CCCcEEEEEECCCCCEEEccCCCC
Confidence 357899999888877665433 011 1234454332 23222211 123457788888887776643220
Q ss_pred ccccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCe-EEE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGC-LCV 266 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~-L~~ 266 (393)
........-+|. +++.... .....|..+|+.+.....+....... ....+. -+|+ |++
T Consensus 288 -------------~~~~~~wSPDG~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~-----~~~~~S-pDG~~Ia~ 347 (429)
T PRK03629 288 -------------NNTEPTWFPDSQNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQN-----QDADVS-SDGKFMVM 347 (429)
T ss_pred -------------CcCceEECCCCCEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCc-----cCEEEC-CCCCEEEE
Confidence 001111222443 4444432 22347888888876655553221110 011222 2554 444
Q ss_pred EEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCc---EEEEEECCCCcEEEE
Q 046902 267 FRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE---KLVWFDLETNSLRTV 341 (393)
Q Consensus 267 ~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~yd~~t~~~~~v 341 (393)
+.... ....||+++-.+ +.+..+. ... .... ..+.+||..|++...+. .+...+++++..+.+
T Consensus 348 ~~~~~-g~~~I~~~dl~~--g~~~~Lt---~~~-----~~~~-p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 348 VSSNG-GQQHIAKQDLAT--GGVQVLT---DTF-----LDET-PSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred EEccC-CCceEEEEECCC--CCeEEeC---CCC-----CCCC-ceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 44332 245666665322 3344322 111 0122 34668888887765432 477788887776666
No 179
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=24.16 E-value=7e+02 Score=24.57 Aligned_cols=128 Identities=9% Similarity=-0.044 Sum_probs=61.1
Q ss_pred eEeC-ceEEEeccCCCCCcEEEEEECCCc--eeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCC-----CeEEEEE
Q 046902 208 VLAG-GALHWVSPKSSTRSVIVAFDLVAE--EFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNL-----VYVDMWM 279 (393)
Q Consensus 208 v~~~-G~lyw~~~~~~~~~~il~fD~~~e--~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-----~~~~iW~ 279 (393)
+..+ |.+|.-... ..|.++|..+. .|+.-..+.... .-......+..+|.+++...... ..-.++.
T Consensus 106 ~~~~~~~V~v~~~~----g~v~AlD~~TG~~~W~~~~~~~~~~--~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~a 179 (488)
T cd00216 106 AYWDPRKVFFGTFD----GRLVALDAETGKQVWKFGNNDQVPP--GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRA 179 (488)
T ss_pred EEccCCeEEEecCC----CeEEEEECCCCCEeeeecCCCCcCc--ceEecCCCEEECCEEEEeccccccccCCCCcEEEE
Confidence 3445 888875443 68999999754 455422222100 00001122334566554332111 1234566
Q ss_pred EeecCCCCCeEEEEEeeCCCCCC------------CcceeeEEEEEeCCcEEEEEEcCc------------------EEE
Q 046902 280 MKEHAVKESWTKLFSVQEPTPTR------------SFLFLRPLGYSRNGVKLLLEVRRE------------------KLV 329 (393)
Q Consensus 280 l~~~~~~~~W~~~~~i~~~~~~~------------~~~~~~~~~~~~~g~~i~l~~~~~------------------~l~ 329 (393)
++-...+..|.....-......+ ......+..+...++.||+...+. .++
T Consensus 180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (488)
T cd00216 180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIV 259 (488)
T ss_pred EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEE
Confidence 66432245675433211100000 000112334444567888875332 699
Q ss_pred EEECCCCcEEEE
Q 046902 330 WFDLETNSLRTV 341 (393)
Q Consensus 330 ~yd~~t~~~~~v 341 (393)
.+|.+|++...-
T Consensus 260 Ald~~tG~~~W~ 271 (488)
T cd00216 260 ALDADTGKVKWF 271 (488)
T ss_pred EEcCCCCCEEEE
Confidence 999999886654
No 180
>PF15408 PH_7: Pleckstrin homology domain
Probab=23.93 E-value=28 Score=24.82 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=16.7
Q ss_pred eeeeecccchhhhcCChHHH
Q 046902 23 LRFRCVSKTCCSLIDSQDFI 42 (393)
Q Consensus 23 ~r~r~VcK~W~~li~s~~F~ 42 (393)
+..+-|||.|-.+..+|+|.
T Consensus 80 A~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 80 ASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhHHHHHHHHHHHhcChhhh
Confidence 34567999999999999985
No 181
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=23.04 E-value=3.1e+02 Score=20.41 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=30.9
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEE
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVL 158 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 158 (393)
..++++.+|.+++|...- . ....+.+..|+..+.|.|+...
T Consensus 8 ~a~v~~~~~~~~~W~~~~--~-------~~g~v~~~~d~~~~~y~i~~~~ 48 (104)
T cd00837 8 VAQVYTADPSTGKWVPAS--G-------GTGAVSLVKDSTRNTYRIRGVD 48 (104)
T ss_pred EEEEEEECCCCCceEECC--C-------CeEEEEEEEECCCCEEEEEEEe
Confidence 357899999999998631 1 3456778889988889888765
No 182
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.96 E-value=1.4e+02 Score=16.05 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=10.8
Q ss_pred EEEEEeCCcEEEEEEcCcEEEEE
Q 046902 309 PLGYSRNGVKLLLEVRREKLVWF 331 (393)
Q Consensus 309 ~~~~~~~g~~i~l~~~~~~l~~y 331 (393)
-+++.++|++++.....+++..|
T Consensus 6 gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEC
Confidence 34555555544433334455543
No 183
>PF13854 Kelch_5: Kelch motif
Probab=22.93 E-value=1.8e+02 Score=17.30 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=18.8
Q ss_pred EEEEEeCCeEEEEEEcC--CC--eEEEEEEe
Q 046902 255 VDVGSLEGCLCVFRFYN--LV--YVDMWMMK 281 (393)
Q Consensus 255 ~~l~~~~G~L~~~~~~~--~~--~~~iW~l~ 281 (393)
...+..+++|++++... .. .=++|+++
T Consensus 8 hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~ 38 (42)
T PF13854_consen 8 HSAVVVGNNIYIFGGYSGNNNSYSNDLYVLD 38 (42)
T ss_pred eEEEEECCEEEEEcCccCCCCCEECcEEEEE
Confidence 35667789999998654 12 34688876
No 184
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=22.38 E-value=2.2e+02 Score=26.21 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=35.2
Q ss_pred eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEECCC
Q 046902 260 LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLET 335 (393)
Q Consensus 260 ~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~~t 335 (393)
++|+-.+.. .++..+.||-++|....+- +-.++.++ ++...-+.+.+|...+++.. ++.+|+.|-+.-
T Consensus 96 SdGK~lat~-~~Dr~Ir~w~~~DF~~~eH--r~~R~nve-----~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 96 SDGKKLATI-SGDRSIRLWDVRDFENKEH--RCIRQNVE-----YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred CCCceeEEE-eCCceEEEEecchhhhhhh--hHhhcccc-----CCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 355533333 3344999999998653221 11222322 12344566666555555543 445677776543
No 185
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.15 E-value=5.2e+02 Score=22.33 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=46.0
Q ss_pred CCccEEeeeeeceEEEeeCCceEEEEeccccceeccCCCCC-C-CCC------CCCceEEEEeeeCCCCCeEEEEEEEee
Q 046902 90 GSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPC-L-VGF------PSAFTFYGFGQDKINDDYKLVRVLHFK 161 (393)
Q Consensus 90 ~~~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~-~-~~~------~~~~~~~~~g~d~~~~~ykVv~~~~~~ 161 (393)
......+.+++..|++....+.++|||-.+++... |+... + ... ........+..+ .+..=||.+.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~-~~~Si~pll~~~~~~~~~~~~~i~~~~lt--~~G~PiV~ls--- 85 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVL-PPVSIAPLLNSSPVSDKSSSPNITSCSLT--SNGVPIVTLS--- 85 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeecc-CCccHHHHhcccccccCCCCCcEEEEEEc--CCCCEEEEEe---
Confidence 44555677777776666567899999988876543 33110 0 000 001111112222 1122333332
Q ss_pred cCCCCccEEEEEEeCCCCeEEccc
Q 046902 162 GNDGDDVEVEVYSLKTNSWRRISN 185 (393)
Q Consensus 162 ~~~~~~~~~~Vyss~t~~W~~~~~ 185 (393)
.....+|+..-++|..+.+
T Consensus 86 -----ng~~y~y~~~L~~W~~vsd 104 (219)
T PF07569_consen 86 -----NGDSYSYSPDLGCWIRVSD 104 (219)
T ss_pred -----CCCEEEeccccceeEEecc
Confidence 2346899999999998864
No 186
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=21.69 E-value=1.8e+02 Score=16.80 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=17.3
Q ss_pred CCcEEEEEEc-CcEEEEEECCCCcEE
Q 046902 315 NGVKLLLEVR-REKLVWFDLETNSLR 339 (393)
Q Consensus 315 ~g~~i~l~~~-~~~l~~yd~~t~~~~ 339 (393)
+|+.+|+... ...+..+|+++.+..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 5666777543 456888999887643
No 187
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=21.29 E-value=1.2e+02 Score=30.35 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=26.2
Q ss_pred eeeEEEEEeCCcEEEEEEcCcEEEEEECCCC
Q 046902 306 FLRPLGYSRNGVKLLLEVRREKLVWFDLETN 336 (393)
Q Consensus 306 ~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~ 336 (393)
+..-++++++|+.|++...+++++.||+.-.
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 4567888999999999988889999998754
No 188
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=21.04 E-value=8e+02 Score=24.13 Aligned_cols=125 Identities=16% Similarity=0.259 Sum_probs=54.8
Q ss_pred eEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEe-CCeEEEEEEc-------CC-C--eEE
Q 046902 208 VLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL-EGCLCVFRFY-------NL-V--YVD 276 (393)
Q Consensus 208 v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~-------~~-~--~~~ 276 (393)
..-||.+++... ..+..+|.-........+|.... .++..+.++ +|.+.++... .. . .=.
T Consensus 155 ~l~nG~ll~~~~-----~~~~e~D~~G~v~~~~~l~~~~~----~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~ 225 (477)
T PF05935_consen 155 QLPNGNLLIGSG-----NRLYEIDLLGKVIWEYDLPGGYY----DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV 225 (477)
T ss_dssp E-TTS-EEEEEB-----TEEEEE-TT--EEEEEE--TTEE-----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E
T ss_pred EcCCCCEEEecC-----CceEEEcCCCCEEEeeecCCccc----ccccccEECCCCCEEEEEeecccccCCCCccEecCE
Confidence 346788888765 48999999888777788887431 011223333 5555554431 00 0 001
Q ss_pred EEEEeecCC-CCCeEEEEEeeCCCC----------------CCCcceeeEEEEEeCCcEEEEEEcCc-EEEEEECCCCcE
Q 046902 277 MWMMKEHAV-KESWTKLFSVQEPTP----------------TRSFLFLRPLGYSRNGVKLLLEVRRE-KLVWFDLETNSL 338 (393)
Q Consensus 277 iW~l~~~~~-~~~W~~~~~i~~~~~----------------~~~~~~~~~~~~~~~g~~i~l~~~~~-~l~~yd~~t~~~ 338 (393)
|=+++..|. ...|.....++.... ....-+..-+.+.+..+.|++..+.. .++..|.+|+++
T Consensus 226 Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 226 IVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp EEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 222221110 011211111211110 00112444556666567888887654 699999999999
Q ss_pred EEE
Q 046902 339 RTV 341 (393)
Q Consensus 339 ~~v 341 (393)
..+
T Consensus 306 ~Wi 308 (477)
T PF05935_consen 306 KWI 308 (477)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
Done!