Query 046905
Match_columns 225
No_of_seqs 181 out of 1234
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.4 1.6E-12 3.5E-17 125.2 10.0 101 5-129 620-721 (1153)
2 PLN03210 Resistant to P. syrin 99.3 8.3E-12 1.8E-16 120.3 11.5 176 19-213 654-903 (1153)
3 PLN00113 leucine-rich repeat r 99.0 1.7E-09 3.7E-14 103.0 7.9 63 148-214 257-319 (968)
4 PLN00113 leucine-rich repeat r 99.0 2.3E-09 4.9E-14 102.2 8.7 65 147-215 208-272 (968)
5 PRK15386 type III secretion pr 98.3 2.8E-06 6.1E-11 72.7 8.3 14 179-192 156-169 (426)
6 PRK15370 E3 ubiquitin-protein 98.1 4.4E-06 9.6E-11 77.3 6.6 43 17-63 215-257 (754)
7 KOG4194 Membrane glycoprotein 98.1 4.8E-07 1E-11 79.5 -0.7 182 3-211 252-447 (873)
8 KOG0444 Cytoskeletal regulator 97.9 4.4E-07 9.6E-12 80.4 -4.0 36 176-212 336-371 (1255)
9 KOG4658 Apoptotic ATPase [Sign 97.8 1E-05 2.2E-10 76.1 2.8 134 43-199 713-849 (889)
10 KOG3665 ZYG-1-like serine/thre 97.8 2.2E-06 4.8E-11 78.5 -1.7 139 17-188 117-259 (699)
11 PRK15370 E3 ubiquitin-protein 97.8 7.4E-05 1.6E-09 69.3 7.8 54 152-215 305-358 (754)
12 KOG3207 Beta-tubulin folding c 97.8 1E-05 2.2E-10 68.8 2.0 39 84-123 195-233 (505)
13 PF13855 LRR_8: Leucine rich r 97.8 2.9E-05 6.2E-10 48.6 3.4 60 22-97 1-60 (61)
14 KOG0617 Ras suppressor protein 97.8 7.4E-07 1.6E-11 67.1 -4.7 82 21-123 32-113 (264)
15 PRK15386 type III secretion pr 97.7 7E-05 1.5E-09 64.3 5.9 38 87-128 73-110 (426)
16 PF13855 LRR_8: Leucine rich r 97.7 8.9E-05 1.9E-09 46.3 5.0 59 151-214 1-60 (61)
17 KOG4658 Apoptotic ATPase [Sign 97.7 3.2E-05 6.9E-10 72.9 4.2 43 21-64 570-612 (889)
18 KOG2120 SCF ubiquitin ligase, 97.7 2.4E-06 5.2E-11 69.6 -3.2 168 23-211 186-371 (419)
19 PRK15387 E3 ubiquitin-protein 97.6 0.00031 6.7E-09 65.3 8.9 44 16-64 216-259 (788)
20 cd00116 LRR_RI Leucine-rich re 97.5 3.9E-05 8.4E-10 63.8 1.0 64 148-213 218-288 (319)
21 KOG3207 Beta-tubulin folding c 97.4 1.4E-05 3E-10 68.1 -1.9 179 19-215 118-313 (505)
22 KOG2120 SCF ubiquitin ligase, 97.4 4.6E-05 1E-09 62.2 0.6 89 86-191 286-375 (419)
23 cd00116 LRR_RI Leucine-rich re 97.4 0.0001 2.2E-09 61.2 2.6 65 149-215 191-262 (319)
24 PRK15387 E3 ubiquitin-protein 97.3 0.00036 7.7E-09 64.9 5.7 174 21-215 281-457 (788)
25 KOG4341 F-box protein containi 97.3 5.3E-05 1.2E-09 64.3 -0.5 145 23-194 295-441 (483)
26 KOG0444 Cytoskeletal regulator 97.2 0.00011 2.3E-09 65.8 1.0 167 20-213 76-255 (1255)
27 KOG1947 Leucine rich repeat pr 97.2 4.4E-05 9.5E-10 66.9 -1.9 93 19-125 211-308 (482)
28 PF14580 LRR_9: Leucine-rich r 97.1 0.00096 2.1E-08 51.0 4.6 106 22-163 19-125 (175)
29 KOG0617 Ras suppressor protein 97.0 1.8E-05 3.8E-10 59.8 -4.9 138 20-198 54-191 (264)
30 KOG3665 ZYG-1-like serine/thre 97.0 0.00022 4.8E-09 65.7 1.1 111 82-213 144-260 (699)
31 KOG4194 Membrane glycoprotein 97.0 0.0022 4.7E-08 57.2 6.4 61 6-67 62-122 (873)
32 KOG1947 Leucine rich repeat pr 96.9 0.00018 3.8E-09 63.1 -1.0 40 85-124 242-281 (482)
33 PF14580 LRR_9: Leucine-rich r 96.8 0.0011 2.4E-08 50.6 3.2 85 20-123 40-124 (175)
34 KOG4341 F-box protein containi 96.8 6E-05 1.3E-09 64.0 -4.5 94 86-194 138-231 (483)
35 PF12799 LRR_4: Leucine Rich r 96.4 0.0051 1.1E-07 35.7 3.5 39 86-128 1-39 (44)
36 KOG3864 Uncharacterized conser 96.4 0.0009 2E-08 51.8 0.1 68 43-125 121-189 (221)
37 KOG0618 Serine/threonine phosp 96.2 0.00064 1.4E-08 63.1 -2.0 108 21-164 382-489 (1081)
38 PLN03150 hypothetical protein; 95.9 0.016 3.5E-07 53.2 5.7 81 23-123 419-501 (623)
39 KOG3864 Uncharacterized conser 95.9 0.0012 2.6E-08 51.1 -1.4 69 84-166 123-191 (221)
40 PLN03150 hypothetical protein; 95.8 0.025 5.4E-07 51.9 6.6 39 83-123 439-477 (623)
41 KOG0472 Leucine-rich repeat pr 95.7 0.00028 6.2E-09 59.9 -5.9 57 149-212 250-306 (565)
42 KOG0618 Serine/threonine phosp 95.7 0.004 8.7E-08 58.1 0.9 133 19-192 356-489 (1081)
43 PF13504 LRR_7: Leucine rich r 95.2 0.015 3.3E-07 26.4 1.5 17 179-196 1-17 (17)
44 KOG2123 Uncharacterized conser 95.1 0.0015 3.3E-08 53.1 -3.2 81 21-122 18-98 (388)
45 PF12799 LRR_4: Leucine Rich r 94.9 0.022 4.7E-07 33.0 2.1 39 152-196 2-40 (44)
46 PF00560 LRR_1: Leucine Rich R 94.0 0.04 8.7E-07 26.7 1.6 19 180-199 1-19 (22)
47 COG4886 Leucine-rich repeat (L 93.5 0.06 1.3E-06 46.3 2.9 120 83-213 160-287 (394)
48 COG4886 Leucine-rich repeat (L 92.9 0.098 2.1E-06 45.0 3.2 104 84-196 184-294 (394)
49 KOG2982 Uncharacterized conser 92.7 0.054 1.2E-06 44.8 1.2 64 43-122 93-156 (418)
50 KOG2739 Leucine-rich acidic nu 92.3 0.068 1.5E-06 43.0 1.4 12 46-57 64-75 (260)
51 KOG0472 Leucine-rich repeat pr 92.2 0.082 1.8E-06 45.5 1.7 41 20-62 433-473 (565)
52 KOG1259 Nischarin, modulator o 91.1 0.057 1.2E-06 44.7 -0.3 39 147-190 370-410 (490)
53 smart00367 LRR_CC Leucine-rich 90.5 0.15 3.2E-06 25.7 1.0 16 178-193 1-16 (26)
54 KOG1259 Nischarin, modulator o 87.9 0.21 4.5E-06 41.5 0.7 18 145-162 393-410 (490)
55 KOG2739 Leucine-rich acidic nu 82.7 0.88 1.9E-05 36.8 2.0 90 21-126 64-157 (260)
56 KOG2982 Uncharacterized conser 80.9 1.1 2.4E-05 37.3 2.0 41 87-128 174-214 (418)
57 KOG0531 Protein phosphatase 1, 79.0 0.79 1.7E-05 39.9 0.7 100 20-123 93-197 (414)
58 PF07725 LRR_3: Leucine Rich R 79.0 0.74 1.6E-05 21.8 0.3 14 2-15 6-19 (20)
59 KOG1644 U2-associated snRNP A' 79.0 3.6 7.9E-05 32.3 4.1 11 85-95 87-97 (233)
60 KOG0532 Leucine-rich repeat (L 78.8 0.1 2.2E-06 46.7 -4.9 30 181-211 213-242 (722)
61 KOG2123 Uncharacterized conser 78.0 0.21 4.6E-06 41.0 -2.9 32 85-120 18-49 (388)
62 KOG4237 Extracellular matrix p 75.7 0.48 1E-05 40.7 -1.5 46 17-63 62-107 (498)
63 PF13306 LRR_5: Leucine rich r 75.5 21 0.00046 24.8 7.3 100 85-211 11-111 (129)
64 KOG0531 Protein phosphatase 1, 72.1 1.7 3.7E-05 37.8 0.9 42 21-64 71-112 (414)
65 KOG1644 U2-associated snRNP A' 68.0 9.3 0.0002 30.1 4.0 88 84-189 62-150 (233)
66 KOG1909 Ran GTPase-activating 65.6 4.7 0.0001 34.2 2.1 149 20-190 155-309 (382)
67 smart00369 LRR_TYP Leucine-ric 63.7 4.3 9.4E-05 20.0 1.1 20 178-198 1-20 (26)
68 smart00370 LRR Leucine-rich re 63.7 4.3 9.4E-05 20.0 1.1 20 178-198 1-20 (26)
69 KOG1859 Leucine-rich repeat pr 59.7 2.3 4.9E-05 39.8 -0.8 99 21-123 186-290 (1096)
70 KOG4237 Extracellular matrix p 57.4 6.6 0.00014 34.1 1.7 39 21-60 273-311 (498)
71 PF13516 LRR_6: Leucine Rich r 57.2 7.4 0.00016 18.7 1.2 11 86-96 2-12 (24)
72 KOG0532 Leucine-rich repeat (L 54.7 2.7 5.9E-05 38.0 -1.1 97 21-123 142-245 (722)
73 smart00364 LRR_BAC Leucine-ric 28.5 34 0.00074 17.3 0.9 18 179-197 2-19 (26)
74 KOG1859 Leucine-rich repeat pr 21.4 9.9 0.00022 35.8 -3.1 15 84-98 277-291 (1096)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=1.6e-12 Score=125.24 Aligned_cols=101 Identities=27% Similarity=0.424 Sum_probs=62.7
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccc
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKI 83 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~ 83 (225)
+++++.+|.+- ..+++|+.|+++++..+..+|. +..+++|++|++ +|..+..++.. ..
T Consensus 620 ~s~l~~L~~~~---~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~s----------------i~ 678 (1153)
T PLN03210 620 GSKLEKLWDGV---HSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSS----------------IQ 678 (1153)
T ss_pred Ccccccccccc---ccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchh----------------hh
Confidence 44555566543 3466777777776555556664 456777777777 77777665432 23
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCccccccc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVV 129 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~ 129 (225)
.+++|+.|++.+|..++.+. .. ..+++|+.|.+.+|..++.++
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp--~~-i~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILP--TG-INLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccC--Cc-CCCCCCCEEeCCCCCCccccc
Confidence 46677777777777776652 11 256677777777776655443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.33 E-value=8.3e-12 Score=120.35 Aligned_cols=176 Identities=17% Similarity=0.258 Sum_probs=104.5
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc-------------------cccc----
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE-------------------SHVG---- 74 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~-------------------~~l~---- 74 (225)
..+++|+.|.+.+|..+..+|.. ++++++|+.|++ +|.+++.++....... .++.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred ccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence 34678888888877777777765 567777888877 7777666654211100 0000
Q ss_pred -cc---cccc------------------------------ccccccccceEeccCccCccccCCchHHhhcccCCEEEEe
Q 046905 75 -VS---KLAL------------------------------IKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVS 120 (225)
Q Consensus 75 -~~---~l~~------------------------------~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~ 120 (225)
.. .++. ....+++|+.|++.+|+.+..+ |...+++++|+.|+|.
T Consensus 733 ~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIE 810 (1153)
T ss_pred CCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc--ChhhhCCCCCCEEECC
Confidence 00 0000 0011356777777777766665 4566788888888888
Q ss_pred cCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC----------------ccceeCCCccEE
Q 046905 121 GCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV----------------DYTFKFPSLEDL 184 (225)
Q Consensus 121 ~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~----------------~~~~~~p~L~~L 184 (225)
+|.+++.++.. ..+++|+.|.+.+|.+++.++.... .....+++|+.|
T Consensus 811 ~C~~L~~LP~~----------------~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L 874 (1153)
T PLN03210 811 NCINLETLPTG----------------INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCCcCeeCCC----------------CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEE
Confidence 88887776521 1355666666666655544321100 001236677777
Q ss_pred EEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 185 IVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 185 ~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
++.+|++|+.+|.....+++|+.+.+.++
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCC
Confidence 77777777777766566677777776654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.95 E-value=1.7e-09 Score=103.04 Aligned_cols=63 Identities=8% Similarity=-0.061 Sum_probs=39.7
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
..+++|+.|.+.++.-...++. ....+++|++|++.+|.-...+|.....+++|+.+++..+.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPP----SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred hCCCCCCEEECcCCeeeccCch----hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 3456667776666532222221 12347788888888885544567666778888888887553
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.95 E-value=2.3e-09 Score=102.20 Aligned_cols=65 Identities=8% Similarity=-0.187 Sum_probs=46.1
Q ss_pred cccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 147 EILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 147 ~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|.+.++.--..++.. ...+++|++|++.+|.-...+|..+..+++|+++.+..+..
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYE----IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChh----HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 345677888888776543333322 24588999999999865556787778889999999986544
No 5
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=2.8e-06 Score=72.71 Aligned_cols=14 Identities=57% Similarity=1.094 Sum_probs=7.9
Q ss_pred CCccEEEEeCCCCC
Q 046905 179 PSLEDLIVTGCCNM 192 (225)
Q Consensus 179 p~L~~L~I~~C~~L 192 (225)
++|++|.|.+|..+
T Consensus 156 sSLk~L~Is~c~~i 169 (426)
T PRK15386 156 PSLKTLSLTGCSNI 169 (426)
T ss_pred CcccEEEecCCCcc
Confidence 35666666666544
No 6
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.15 E-value=4.4e-06 Score=77.27 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=26.8
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEe
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIF 63 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~ 63 (225)
|...+.+|+.|+++++. +..+|..+ .++|+.|+++...+..++
T Consensus 215 P~~l~~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L~~LP 257 (754)
T PRK15370 215 PENLQGNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRITELP 257 (754)
T ss_pred ChhhccCCCEEECCCCc-cccCChhh---hccccEEECcCCccCcCC
Confidence 44455689999988754 45566532 357888888333455443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.10 E-value=4.8e-07 Score=79.48 Aligned_cols=182 Identities=17% Similarity=0.100 Sum_probs=97.6
Q ss_pred CCccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccccccccccccccc
Q 046905 3 YLDKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIK 82 (225)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~ 82 (225)
++.+++.++-.|.|-. +.++++|++..+.....-..| +-++++|+.|+++-..++.+....+
T Consensus 252 lqrN~I~kL~DG~Fy~--l~kme~l~L~~N~l~~vn~g~-lfgLt~L~~L~lS~NaI~rih~d~W--------------- 313 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYG--LEKMEHLNLETNRLQAVNEGW-LFGLTSLEQLDLSYNAIQRIHIDSW--------------- 313 (873)
T ss_pred hhhcCcccccCcceee--ecccceeecccchhhhhhccc-ccccchhhhhccchhhhheeecchh---------------
Confidence 4556666666666544 667777777654432222222 3457777777775555555533221
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC-----CCCC-----cccc---ccccccc
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-----GDSD-----VAGA---NLEEEIL 149 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-----~~~~-----~~~~---~~~~~~~ 149 (225)
...++|+.|++++- .+..+. +.....+..|++|.++.-. +..+-..... ...+ .+.+ .......
T Consensus 314 sftqkL~~LdLs~N-~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 314 SFTQKLKELDLSSN-RITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred hhcccceeEecccc-ccccCC-hhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 12466777777654 344442 3334455556666655432 2221100000 0000 0000 0122335
Q ss_pred ccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEec
Q 046905 150 FSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYS 211 (225)
Q Consensus 150 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~ 211 (225)
+|+|+.|.+.+- +++++.... +..+++||+|++.+-+ +.++ |..+.++ .|+++.+.
T Consensus 391 l~~LrkL~l~gN-qlk~I~krA---fsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 391 LPSLRKLRLTGN-QLKSIPKRA---FSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chhhhheeecCc-eeeecchhh---hccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 788999888764 677777653 3468899999988854 4444 4555555 88888886
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.93 E-value=4.4e-07 Score=80.43 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=28.1
Q ss_pred eeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecC
Q 046905 176 FKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSE 212 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~ 212 (225)
..|+.|++|.+ +|..|-.+|.++..++.|+.+++..
T Consensus 336 cRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 336 CRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred hhhHHHHHhcc-cccceeechhhhhhcCCcceeeccC
Confidence 35778888886 4567778998888889999888863
No 9
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.83 E-value=1e-05 Score=76.12 Aligned_cols=134 Identities=23% Similarity=0.331 Sum_probs=95.9
Q ss_pred HHhccCCcEEEE-eccccceEeccCCcccccccccccccccc-cccccceEeccCccCccccCCchHHhhcccCCEEEEe
Q 046905 43 LEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKI-SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVS 120 (225)
Q Consensus 43 ~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~-~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~ 120 (225)
+..+.+|+.|.| +|...+........ .... .|+++..+.+.+|..++... +....|+|+.|++.
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~-----------~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEES-----------LIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLV 778 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccc-----------cchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEe
Confidence 456788888888 88765443211100 0112 38899999999999988763 44567999999999
Q ss_pred cCcccccccccccCCCCCccccccccccccccccee-ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCC
Q 046905 121 GCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYM-TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD 199 (225)
Q Consensus 121 ~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L-~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~ 199 (225)
.|..++++++....... ....+..|.++..+ .+.+.+.++.++... ..++.|+.+.+..||+++++|...
T Consensus 779 ~~~~~e~~i~~~k~~~~-----l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~----l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLE-----LKELILPFNKLEGLRMLCSLGGLPQLYWLP----LSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred cccccccCCCHHHHhhh-----cccEEecccccccceeeecCCCCceeEecc----cCccchhheehhcCcccccCcccc
Confidence 99998887654322100 00135678888888 588999998888755 667889999999999999999653
No 10
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=2.2e-06 Score=78.54 Aligned_cols=139 Identities=22% Similarity=0.248 Sum_probs=83.1
Q ss_pred ccccccCccEEEEee-CCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 17 PRHLFGRLRRLEVVR-DDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
..++=.||+.|+|+| ......+|......||+|+.|.| +-.-..+-+. ....+||||.+|||+
T Consensus 117 n~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~---------------~lc~sFpNL~sLDIS 181 (699)
T KOG3665|consen 117 NEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS---------------QLCASFPNLRSLDIS 181 (699)
T ss_pred hHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH---------------HHhhccCccceeecC
Confidence 334556899999998 44455666654567999999998 4211110000 123469999999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCccee--ecCCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSF--CSGVV 172 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~--~~~~~ 172 (225)
++ +++.+ ....++++|+.|.+.+.+- +.- .. -.....+.+|+.|+|+.=.+...- .....
T Consensus 182 ~T-nI~nl---~GIS~LknLq~L~mrnLe~-e~~---~~----------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYl 243 (699)
T KOG3665|consen 182 GT-NISNL---SGISRLKNLQVLSMRNLEF-ESY---QD----------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYL 243 (699)
T ss_pred CC-CccCc---HHHhccccHHHHhccCCCC-Cch---hh----------HHHHhcccCCCeeeccccccccchHHHHHHH
Confidence 99 56665 5677899999998887652 110 00 013345677888887654443221 00000
Q ss_pred ccceeCCCccEEEEeC
Q 046905 173 DYTFKFPSLEDLIVTG 188 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~ 188 (225)
++...+|.|+.|+.++
T Consensus 244 ec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 244 ECGMVLPELRFLDCSG 259 (699)
T ss_pred HhcccCccccEEecCC
Confidence 1123477777777654
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.79 E-value=7.4e-05 Score=69.33 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=35.4
Q ss_pred ccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 152 KLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 152 ~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.|+.|.+.++ +++.++.. ..++|+.|.+.+| +++.+|..+ .++|+.|++.++..
T Consensus 305 sL~~L~Ls~N-~Lt~LP~~------l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~L 358 (754)
T PRK15370 305 GITHLNVQSN-SLTALPET------LPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKNQI 358 (754)
T ss_pred hHHHHHhcCC-ccccCCcc------ccccceeccccCC-ccccCChhh--cCcccEEECCCCCC
Confidence 4666666553 34444322 2478999999988 577788643 36899999886643
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=1e-05 Score=68.82 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=23.3
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
.++.|+.|.+..|+ +..--....+..+|+|+.|++..-.
T Consensus 195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc
Confidence 46777888888773 3321112234567777777777654
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.77 E-value=2.9e-05 Score=48.57 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=39.6
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
++|++|+++++. +..+|...+..+++|++|+++...+..++.. .+..+++|++|++++++
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~---------------~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPD---------------AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETT---------------TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHH---------------HHcCCCCCCEEeCcCCc
Confidence 467888888763 4556655567788888888855566666542 23346777888777763
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.76 E-value=7.4e-07 Score=67.13 Aligned_cols=82 Identities=24% Similarity=0.231 Sum_probs=56.1
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
++++..|.+++.. +...|.. +..+.+|++|.+.-..+++++. ...++|+|+.|.+. ..+|.
T Consensus 32 ~s~ITrLtLSHNK-l~~vppn-ia~l~nlevln~~nnqie~lp~----------------~issl~klr~lnvg-mnrl~ 92 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPN-IAELKNLEVLNLSNNQIEELPT----------------SISSLPKLRILNVG-MNRLN 92 (264)
T ss_pred hhhhhhhhcccCc-eeecCCc-HHHhhhhhhhhcccchhhhcCh----------------hhhhchhhhheecc-hhhhh
Confidence 5677788888654 4445554 5678888888884455665543 34568888888876 44555
Q ss_pred ccCCchHHhhcccCCEEEEecCc
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
.+ |...+++|.|+.|++.+-.
T Consensus 93 ~l--prgfgs~p~levldltynn 113 (264)
T KOG0617|consen 93 IL--PRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred cC--ccccCCCchhhhhhccccc
Confidence 44 5677889999999888754
No 15
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=7e-05 Score=64.33 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=20.3
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV 128 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l 128 (225)
+|+.|.|++|..++.+ +... .++|+.|+|.+|.++..+
T Consensus 73 sLtsL~Lsnc~nLtsL--P~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 73 ELTEITIENCNNLTTL--PGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCcEEEccCCCCcccC--Cchh--hhhhhheEccCccccccc
Confidence 4666666666666544 2111 245666666666555433
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.72 E-value=8.9e-05 Score=46.28 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=36.6
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCc
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESA 214 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~ 214 (225)
|+|++|.+.++ +++.+..+. ...+++|++|++.++ +++.++.+ +..+++|++|++.++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~---f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS---FSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTT---TTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHH---HcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666 666665432 234677777777754 56666543 3567777777776543
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.72 E-value=3.2e-05 Score=72.86 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=27.2
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEec
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFS 64 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~ 64 (225)
++.|++|+++++.....+|.. ++.+-+|++|++.+..+..+|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred CcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccch
Confidence 556666666666666666665 5667777777775555555543
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.4e-06 Score=69.55 Aligned_cols=168 Identities=20% Similarity=0.195 Sum_probs=94.4
Q ss_pred CccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 23 RLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
+|+.|+++.......--..++..+..||.|.+ +- .+.+-.. .....=.+|+.|+|+.|.+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~---------------~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIV---------------NTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHH---------------HHHhccccceeeccccccccch
Confidence 58888888743322222233566777777766 32 1111000 0111124677777777777766
Q ss_pred cCCchHHhhcccCCEEEEecCcccccccccc----cC--CCCCcccc------c--ccccccccccceeecCcCCCccee
Q 046905 102 LVPSSVAKSLERLVTLRVSGCSAMTQVVASC----DQ--GDSDVAGA------N--LEEEILFSKLRYMTMLDLENLTSF 167 (225)
Q Consensus 102 l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~----~~--~~~~~~~~------~--~~~~~~~p~L~~L~l~~~~~L~~~ 167 (225)
....-...++..|.+|.++.|.--.+.+..- .. ...+.++. + ..-....|.|.+|+++++-.|+.-
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 5333344566777777777776433322110 00 00111111 0 012235688999999999888764
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceecCC---CCCCCCeeEEEec
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG---DLITPKRVDAWYS 211 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~---~~~~~~L~~l~i~ 211 (225)
+.. ..+.|+.|++|.++.|-.+- |.. +.+.|+|.++++.
T Consensus 330 ~~~---~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 330 CFQ---EFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHH---HHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEec
Confidence 432 24578999999999997664 432 2567899999886
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.61 E-value=0.00031 Score=65.31 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=28.9
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEec
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFS 64 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~ 64 (225)
+|....++|+.|.+.++. +..+|. .+++|++|+++...+..++.
T Consensus 216 LP~~l~~~L~~L~L~~N~-Lt~LP~----lp~~Lk~LdLs~N~LtsLP~ 259 (788)
T PRK15387 216 LPDCLPAHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV 259 (788)
T ss_pred CCcchhcCCCEEEccCCc-CCCCCC----CCCCCcEEEecCCccCcccC
Confidence 455445678888888644 445664 25888999984456776653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.46 E-value=3.9e-05 Score=63.78 Aligned_cols=64 Identities=11% Similarity=-0.063 Sum_probs=35.6
Q ss_pred ccccccceeecCcCCCcceeecCC--CccceeCCCccEEEEeCCCCCc-----eecCCCCCCCCeeEEEecCC
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGV--VDYTFKFPSLEDLIVTGCCNMK-----IFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~--~~~~~~~p~L~~L~I~~C~~L~-----~lp~~~~~~~~L~~l~i~~~ 213 (225)
..+++|++|.+.+++ +....... .......+.|++|.+.+|. ++ .+.......++|++++++.+
T Consensus 218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 356778888888764 32211000 0000123788999998884 32 22333345578888888754
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=1.4e-05 Score=68.05 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=100.4
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
..+.+|+.+.+.++..-..........+++++.|+++-.=+..+... ......||+|+.|.++.- +
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v-------------~~i~eqLp~Le~LNls~N-r 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV-------------LKIAEQLPSLENLNLSSN-R 183 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH-------------HHHHHhcccchhcccccc-c
Confidence 35777888888775532222113456788888888722111111111 122345899999999876 4
Q ss_pred ccccCCchHHhhcccCCEEEEecCccc-ccc-------cccccC-CCCC-cccccccccccccccceeecCcCCCcceee
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSAM-TQV-------VASCDQ-GDSD-VAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~L-~~l-------~~~~~~-~~~~-~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+...........+++|+.|.++.|.-- +++ |..... -+.. ...+.......+..|+.|+|++-+.+. +.
T Consensus 184 l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~ 262 (505)
T KOG3207|consen 184 LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FD 262 (505)
T ss_pred ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cc
Confidence 554433334457899999999999721 111 000000 0000 000111233455677778777765543 22
Q ss_pred cCCCccceeCCCccEEEEeCCC--CCceecCC-----CCCCCCeeEEEecCCce
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCC--NMKIFTSG-----DLITPKRVDAWYSESAC 215 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~--~L~~lp~~-----~~~~~~L~~l~i~~~~~ 215 (225)
.+. ....||.|+.|++..|. .+. +|.. ...+++|++|.+.++..
T Consensus 263 ~~~--~~~~l~~L~~Lnls~tgi~si~-~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 263 QGY--KVGTLPGLNQLNLSSTGIASIA-EPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccc--ccccccchhhhhccccCcchhc-CCCccchhhhcccccceeeecccCcc
Confidence 221 23569999999998773 333 3433 24689999999987654
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=4.6e-05 Score=62.25 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=53.4
Q ss_pred cccceEeccCccCccccC-CchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 86 GNLTHLVVFSCKKLMNLV-PSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
++|+.|.|++|.+--... ........|+|.+|++++|..++.-. ......|+.|++|.+..|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~--------------~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC--------------FQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH--------------HHHHHhcchheeeehhhhcCC
Confidence 467777777775422211 01233467888888888887654311 024457888999998888665
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCC
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCN 191 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~ 191 (225)
- +..- ......|+|.+|++.||-.
T Consensus 352 ~--p~~~-~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 352 I--PETL-LELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred C--hHHe-eeeccCcceEEEEeccccC
Confidence 1 1100 0113478899999988743
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.38 E-value=0.0001 Score=61.24 Aligned_cols=65 Identities=14% Similarity=-0.022 Sum_probs=37.3
Q ss_pred cccccceeecCcCCCcceeecCC-CccceeCCCccEEEEeCCCCCce-----ecCCC-CCCCCeeEEEecCCce
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGV-VDYTFKFPSLEDLIVTGCCNMKI-----FTSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~-~~~~~~~p~L~~L~I~~C~~L~~-----lp~~~-~~~~~L~~l~i~~~~~ 215 (225)
.+++|++|.+.+|. +....... ......+++|++|++++|+ +.. +.... ...++|+.+++..+..
T Consensus 191 ~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 191 ANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred hCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 44689999998874 22111000 0011347899999999985 332 11111 1247899999976543
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.34 E-value=0.00036 Score=64.89 Aligned_cols=174 Identities=17% Similarity=0.079 Sum_probs=85.0
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCc-ccccccccccccccccccccceEeccCccCc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGC-LESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~-~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
+.+|+.|.+.++. +..+|. .+++|++|+++-..+..++..... ....+....+.......++|+.|+++++ ++
T Consensus 281 p~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~L 354 (788)
T PRK15387 281 PSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QL 354 (788)
T ss_pred hhhcCEEECcCCc-cccccc----cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCC-cc
Confidence 4567778887654 344554 257888888822355555432110 0000111111000011246888888775 55
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCC-CCCccccc-ccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG-DSDVAGAN-LEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~-~~~~~~~~-~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
+.+. . ..++|+.|++.+.. +..++...... ..+.+.-. ..-....++|+.|.+.+.. |+.++. .
T Consensus 355 s~LP--~---lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~-LssIP~-------l 420 (788)
T PRK15387 355 ASLP--T---LPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLPM-------L 420 (788)
T ss_pred CCCC--C---CCcccceehhhccc-cccCcccccccceEEecCCcccCCCCcccCCCEEEccCCc-CCCCCc-------c
Confidence 5542 1 12345555555432 33332111000 00000000 0000123467777777653 544432 1
Q ss_pred CCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+.+|+.|++++. +++.+|..+..+++|+.++++++.+
T Consensus 421 ~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 421 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 346777888774 6778887777788888888876644
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.26 E-value=5.3e-05 Score=64.28 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=69.0
Q ss_pred CccEEEEeeCCccccCCHhHH-HhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 23 RLRRLEVVRDDVATGFPVGLL-EVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
.|+.|..++|......+.+.+ .+.++|++|.+ +|..+.... +.....+.+.|+.+++.+|....
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------------ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------------FTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------------hhhhhcCChhhhhhcccccceeh
Confidence 445555554443443333333 24455555555 555433221 11222345566666666664443
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS 180 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~ 180 (225)
+-...+...+.|.|+.|.++.|+.+..- +-. . ........-.|+.+++.+||.++.-... ....+++
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~----gi~--~----l~~~~c~~~~l~~lEL~n~p~i~d~~Le---~l~~c~~ 427 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDE----GIR--H----LSSSSCSLEGLEVLELDNCPLITDATLE---HLSICRN 427 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhh----hhh--h----hhhccccccccceeeecCCCCchHHHHH---HHhhCcc
Confidence 3211223345666666666666542221 000 0 0011223445677777777776543321 1234677
Q ss_pred ccEEEEeCCCCCce
Q 046905 181 LEDLIVTGCCNMKI 194 (225)
Q Consensus 181 L~~L~I~~C~~L~~ 194 (225)
||.+++.+|....+
T Consensus 428 Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 428 LERIELIDCQDVTK 441 (483)
T ss_pred cceeeeechhhhhh
Confidence 77777777776553
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.23 E-value=0.00011 Score=65.82 Aligned_cols=167 Identities=19% Similarity=0.217 Sum_probs=90.1
Q ss_pred cccCccEEEEee-CCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccc----ccccc---ccc-cccccccccce
Q 046905 20 LFGRLRRLEVVR-DDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLES----HVGVS---KLA-LIKISFGNLTH 90 (225)
Q Consensus 20 ~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~----~l~~~---~l~-~~~~~l~~L~~ 90 (225)
.++.||.+.+++ .-+-+.+|.. +..+..|..|+++-..+.++|..-..... ++... .++ +.+.++.-|-.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 377888888877 3344566766 45677888888765667766643222111 11111 111 12334556677
Q ss_pred EeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC----cce
Q 046905 91 LVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN----LTS 166 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~----L~~ 166 (225)
|++++- +|+.+ |.....+.+|++|.+++-+ |... +...+|+++.|....+.+ +-.
T Consensus 155 LDLS~N-rLe~L--PPQ~RRL~~LqtL~Ls~NP-L~hf-----------------QLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 155 LDLSNN-RLEML--PPQIRRLSMLQTLKLSNNP-LNHF-----------------QLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred hccccc-hhhhc--CHHHHHHhhhhhhhcCCCh-hhHH-----------------HHhcCccchhhhhhhcccccchhhc
Confidence 777765 56666 4566778888888888765 2211 222334333333333322 111
Q ss_pred eecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 167 FCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
++... ..+.+|..++++ |.+|..+|.....+++|+.+.++++
T Consensus 214 ~Ptsl----d~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 214 IPTSL----DDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred CCCch----hhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcC
Confidence 22111 234455555543 4566666666666666666666654
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=4.4e-05 Score=66.94 Aligned_cols=93 Identities=25% Similarity=0.310 Sum_probs=51.8
Q ss_pred ccccCccEEEEee-CCccccCC---HhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEec
Q 046905 19 HLFGRLRRLEVVR-DDVATGFP---VGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVV 93 (225)
Q Consensus 19 ~~l~~L~~L~l~~-~~~~~~~p---~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i 93 (225)
...++|+.|++.+ +......+ ......+++|+.|++ .|..+.+..- ......+++|+.|.+
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l--------------~~l~~~c~~L~~L~l 276 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL--------------SALASRCPNLETLSL 276 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH--------------HHHHhhCCCcceEcc
Confidence 3467888888876 33222222 122345678888888 7765333211 011112566777776
Q ss_pred cCccCccccCCchHHhhcccCCEEEEecCccc
Q 046905 94 FSCKKLMNLVPSSVAKSLERLVTLRVSGCSAM 125 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L 125 (225)
.+|..+++.........+++|++|++..|..+
T Consensus 277 ~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 277 SNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 66766555443444556666777777766654
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.05 E-value=0.00096 Score=50.98 Aligned_cols=106 Identities=21% Similarity=0.259 Sum_probs=31.0
Q ss_pred cCccEEEEeeCCccccCCHhHHH-hccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLE-VLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~-~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
.+++.|++.++.... +. . ++ .+.+|+.|+++...+..+.. ...+++|+.|++.+- .++
T Consensus 19 ~~~~~L~L~~n~I~~-Ie-~-L~~~l~~L~~L~Ls~N~I~~l~~-----------------l~~L~~L~~L~L~~N-~I~ 77 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE-N-LGATLDKLEVLDLSNNQITKLEG-----------------LPGLPRLKTLDLSNN-RIS 77 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--TT---------------------TT--EEE--SS----
T ss_pred ccccccccccccccc-cc-c-hhhhhcCCCEEECCCCCCccccC-----------------ccChhhhhhcccCCC-CCC
Confidence 367888888754322 21 1 33 47788888884444554422 123778888888765 455
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
++. ......+|+|++|++.+-. +.++-.- .....+|+|+.|++.+.|-
T Consensus 78 ~i~-~~l~~~lp~L~~L~L~~N~-I~~l~~l-------------~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 78 SIS-EGLDKNLPNLQELYLSNNK-ISDLNEL-------------EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp S-C-HHHHHH-TT--EEE-TTS----SCCCC-------------GGGGG-TT--EEE-TT-GG
T ss_pred ccc-cchHHhCCcCCEEECcCCc-CCChHHh-------------HHHHcCCCcceeeccCCcc
Confidence 552 1222468888888887543 3332110 2344677788888777653
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.04 E-value=1.8e-05 Score=59.83 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=87.8
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
.+.||+.|.+.+.. +..+|.. ++.++.|+.|.++...+..++. .+.+||-|+.|++.+- +|
T Consensus 54 ~l~nlevln~~nnq-ie~lp~~-issl~klr~lnvgmnrl~~lpr----------------gfgs~p~levldltyn-nl 114 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQ-IEELPTS-ISSLPKLRILNVGMNRLNILPR----------------GFGSFPALEVLDLTYN-NL 114 (264)
T ss_pred Hhhhhhhhhcccch-hhhcChh-hhhchhhhheecchhhhhcCcc----------------ccCCCchhhhhhcccc-cc
Confidence 47788888888654 4567765 6789999999987666654443 3456888888888766 34
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCC
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFP 179 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p 179 (225)
..-..|.....+..|+.|++.+-. .+-+| ..+..+.+|+.|.+++-.-+ +++... ..+.
T Consensus 115 ~e~~lpgnff~m~tlralyl~dnd-fe~lp---------------~dvg~lt~lqil~lrdndll-~lpkei----g~lt 173 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGDND-FEILP---------------PDVGKLTNLQILSLRDNDLL-SLPKEI----GDLT 173 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcCCC-cccCC---------------hhhhhhcceeEEeeccCchh-hCcHHH----HHHH
Confidence 332234555566777777777654 33333 34456677777777665433 244322 3466
Q ss_pred CccEEEEeCCCCCceecCC
Q 046905 180 SLEDLIVTGCCNMKIFTSG 198 (225)
Q Consensus 180 ~L~~L~I~~C~~L~~lp~~ 198 (225)
.|+.|.|.+ ..|+.+|..
T Consensus 174 ~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 174 RLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred HHHHHhccc-ceeeecChh
Confidence 777788777 366667644
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.04 E-value=0.00022 Score=65.67 Aligned_cols=111 Identities=17% Similarity=0.087 Sum_probs=67.1
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
...||+|++|.|.+-.--..-+ .....+||||..|+|+++. +..+ .+...+.+|+.|.++++
T Consensus 144 g~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~Tn-I~nl----------------~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTN-ISNL----------------SGISRLKNLQVLSMRNL 205 (699)
T ss_pred hhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCC-ccCc----------------HHHhccccHHHHhccCC
Confidence 4457888888877653322221 2334578888888888775 4333 24556777777777776
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCcee------cCCCCCCCCeeEEEecCC
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF------TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l------p~~~~~~~~L~~l~i~~~ 213 (225)
+--...... -.+.+..|+.|+|+.=.+...- -+...-+|.|+.|+++..
T Consensus 206 e~e~~~~l~---~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 206 EFESYQDLI---DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred CCCchhhHH---HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 543321111 1246889999999875554321 122345889999998843
No 31
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.96 E-value=0.0022 Score=57.17 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=41.1
Q ss_pred cccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCC
Q 046905 6 KDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEG 67 (225)
Q Consensus 6 ~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~ 67 (225)
.+++.+--..++...++.-+.|+++++. ++.+....+.++++|++++++-..++.+|..++
T Consensus 62 ~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~ 122 (873)
T KOG4194|consen 62 RELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGH 122 (873)
T ss_pred cccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhhhcccccc
Confidence 3445443334444445567889999644 555666667899999999996677888876543
No 32
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.86 E-value=0.00018 Score=63.10 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=19.7
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSA 124 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~ 124 (225)
+++|+.|++.+|..+.+......+..+++|++|.+.+|..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN 281 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCc
Confidence 3555555555555444443222233355555555555554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.82 E-value=0.0011 Score=50.64 Aligned_cols=85 Identities=25% Similarity=0.303 Sum_probs=35.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
.+.+|+.|+++++.. ..+.. +..+++|+.|+++...+.++... ....+|+|+.|.+.+. ++
T Consensus 40 ~l~~L~~L~Ls~N~I-~~l~~--l~~L~~L~~L~L~~N~I~~i~~~---------------l~~~lp~L~~L~L~~N-~I 100 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQI-TKLEG--LPGLPRLKTLDLSNNRISSISEG---------------LDKNLPNLQELYLSNN-KI 100 (175)
T ss_dssp T-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHH---------------HHHH-TT--EEE-TTS---
T ss_pred hhcCCCEEECCCCCC-ccccC--ccChhhhhhcccCCCCCCccccc---------------hHHhCCcCCEEECcCC-cC
Confidence 477999999997653 33433 56789999999966777666320 0124899999999865 45
Q ss_pred cccCCchHHhhcccCCEEEEecCc
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
.++.....+..+|+|+.|++.+.+
T Consensus 101 ~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 101 SDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CChHHhHHHHcCCCcceeeccCCc
Confidence 555433455689999999998876
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.76 E-value=6e-05 Score=63.97 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=59.7
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLT 165 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 165 (225)
..|+.|.+++|....+-..-......|+.++|.|.+|.++...... .-....++|++|.+..|++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~-------------sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL-------------SLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH-------------HHHHhcchhhhhhhcccchhH
Confidence 3578888888877665433344567788888888888765432110 122356777777777777776
Q ss_pred eeecCCCccceeCCCccEEEEeCCCCCce
Q 046905 166 SFCSGVVDYTFKFPSLEDLIVTGCCNMKI 194 (225)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~I~~C~~L~~ 194 (225)
...... ....+|+|++|+++.|++++.
T Consensus 205 ~~~Lk~--la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 205 DVSLKY--LAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HHHHHH--HHHhhhhHHHhhhccCchhhc
Confidence 654332 223477777777777777664
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.43 E-value=0.0051 Score=35.66 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=27.8
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV 128 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l 128 (225)
++|++|+++++ .++.+ +..+..|++|+.|+++++. +.++
T Consensus 1 ~~L~~L~l~~N-~i~~l--~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL--PPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSH--GGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCccc--CchHhCCCCCCEEEecCCC-CCCC
Confidence 47888888888 67766 3446788999999998885 5544
No 36
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.0009 Score=51.75 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEec
Q 046905 43 LEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSG 121 (225)
Q Consensus 43 ~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~ 121 (225)
+..++.++.|.+ +|..+.+..-. -....+++|+.|+|++|+.+++-. ...+..+++|+.|.|.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~--------------~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLE--------------RLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHH--------------HhcccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcC
Confidence 345666666667 77666554221 011136777777777777777653 23455677777777776
Q ss_pred Cccc
Q 046905 122 CSAM 125 (225)
Q Consensus 122 C~~L 125 (225)
.+..
T Consensus 186 l~~v 189 (221)
T KOG3864|consen 186 LPYV 189 (221)
T ss_pred chhh
Confidence 6543
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.16 E-value=0.00064 Score=63.11 Aligned_cols=108 Identities=25% Similarity=0.408 Sum_probs=55.4
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
|.+||.|+++.+. +..||...+.++..|++|.++...++.++. ....++.|+.|.-.+- .+.
T Consensus 382 ~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~----------------tva~~~~L~tL~ahsN-~l~ 443 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPD----------------TVANLGRLHTLRAHSN-QLL 443 (1081)
T ss_pred ccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhH----------------HHHhhhhhHHHhhcCC-cee
Confidence 4455555555432 344555545555555555554444544432 2223555555544322 233
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
.+ | ....++.|+.++++ |.+|.++... .....|+|++|++.+-+.+
T Consensus 444 ~f--P-e~~~l~qL~~lDlS-~N~L~~~~l~--------------~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 444 SF--P-ELAQLPQLKVLDLS-CNNLSEVTLP--------------EALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ec--h-hhhhcCcceEEecc-cchhhhhhhh--------------hhCCCcccceeeccCCccc
Confidence 22 2 45567777777774 4556554311 1112267888888777764
No 38
>PLN03150 hypothetical protein; Provisional
Probab=95.89 E-value=0.016 Score=53.18 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=55.9
Q ss_pred CccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccc-eEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 23 RLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYK-EIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~-~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
.++.|++.++.....+|.. +..+++|+.|++ ++ .+. .++ .....+++|+.|+++++. +.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP----------------~~~~~l~~L~~LdLs~N~-ls 479 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIP----------------PSLGSITSLEVLDLSYNS-FN 479 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCC----------------hHHhCCCCCCEEECCCCC-CC
Confidence 3677888876655566665 678999999999 54 332 222 223457889999998884 44
Q ss_pred ccCCchHHhhcccCCEEEEecCc
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
... +.....+++|+.|+++++.
T Consensus 480 g~i-P~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 480 GSI-PESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCC-chHHhcCCCCCEEECcCCc
Confidence 322 4567788999999998876
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.0012 Score=51.05 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=40.2
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
.++.++.|.+.+|..+.++......+-.++|+.|+|++|+.+.+-. . .....|++|+.|.|.++|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G----L----------~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG----L----------ACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH----H----------HHHHHhhhhHHHHhcCchh
Confidence 3566677777777766665333333345777777777777643310 0 2334566777777777665
Q ss_pred cce
Q 046905 164 LTS 166 (225)
Q Consensus 164 L~~ 166 (225)
...
T Consensus 189 v~~ 191 (221)
T KOG3864|consen 189 VAN 191 (221)
T ss_pred hhc
Confidence 543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=95.80 E-value=0.025 Score=51.94 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=22.1
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
..+++|+.|+++++. +.... +.....+++|+.|+++++.
T Consensus 439 ~~L~~L~~L~Ls~N~-l~g~i-P~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 439 SKLRHLQSINLSGNS-IRGNI-PPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred hCCCCCCEEECCCCc-ccCcC-ChHHhCCCCCCEEECCCCC
Confidence 345666777776663 33222 3345566667777766664
No 41
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.69 E-value=0.00028 Score=59.91 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=29.3
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecC
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSE 212 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~ 212 (225)
.++++..|++++- ++++++.+. .-+.+|++|++++ ..+..+|...+++ .|+.+.+++
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde~----clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDEI----CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred ccccceeeecccc-ccccCchHH----HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcC
Confidence 3444555555442 445555432 3355666666665 3556666555554 555555443
No 42
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.67 E-value=0.004 Score=58.07 Aligned_cols=133 Identities=23% Similarity=0.303 Sum_probs=91.8
Q ss_pred ccccCccEEEEeeCCcc-ccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVA-TGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~-~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..++.|+.|.+.++... ..+|. +.++++||+|++.-..+.+++.. ....+..|+.|.+++-
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsyNrL~~fpas---------------~~~kle~LeeL~LSGN- 417 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSYNRLNSFPAS---------------KLRKLEELEELNLSGN- 417 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhh--hccccceeeeeecccccccCCHH---------------HHhchHHhHHHhcccc-
Confidence 45677888888874432 44555 78899999999966667766542 2345778899999987
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
+|+.+ +.....++.|++|...+- .+..+| ....+|.|+.++++ |.+|+.+.... ..+
T Consensus 418 kL~~L--p~tva~~~~L~tL~ahsN-~l~~fP----------------e~~~l~qL~~lDlS-~N~L~~~~l~~---~~p 474 (1081)
T KOG0618|consen 418 KLTTL--PDTVANLGRLHTLRAHSN-QLLSFP----------------ELAQLPQLKVLDLS-CNNLSEVTLPE---ALP 474 (1081)
T ss_pred hhhhh--hHHHHhhhhhHHHhhcCC-ceeech----------------hhhhcCcceEEecc-cchhhhhhhhh---hCC
Confidence 68877 566778888888776443 233333 44567888888874 55666655432 234
Q ss_pred CCCccEEEEeCCCCC
Q 046905 178 FPSLEDLIVTGCCNM 192 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L 192 (225)
.|.|++|++.|-..+
T Consensus 475 ~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRL 489 (1081)
T ss_pred CcccceeeccCCccc
Confidence 589999999987653
No 43
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.16 E-value=0.015 Score=26.37 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=9.9
Q ss_pred CCccEEEEeCCCCCceec
Q 046905 179 PSLEDLIVTGCCNMKIFT 196 (225)
Q Consensus 179 p~L~~L~I~~C~~L~~lp 196 (225)
|+|+.|++++|. |+.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467888888886 77665
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.0015 Score=53.14 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=49.8
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
+.+.+.|+.+||..-+ + .....|+.|++|.++-.++.++-.. ..+.+|+.|.++.- .+.
T Consensus 18 l~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~pl-----------------~rCtrLkElYLRkN-~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLAPL-----------------QRCTRLKELYLRKN-CIE 76 (388)
T ss_pred HHHhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccchhH-----------------HHHHHHHHHHHHhc-ccc
Confidence 6788899999877433 2 3367899999999866666655332 23666777666532 123
Q ss_pred ccCCchHHhhcccCCEEEEecC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C 122 (225)
++.-..-+..+|+|+.|++..-
T Consensus 77 sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 77 SLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cHHHHHHHhcCchhhhHhhccC
Confidence 3211123456677777777643
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.93 E-value=0.022 Score=32.97 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=18.2
Q ss_pred ccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceec
Q 046905 152 KLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFT 196 (225)
Q Consensus 152 ~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp 196 (225)
+|++|.+.+. +++.++.. ...+++|+.|+++++ +++.++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~----l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPE----LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SSHGGH----GTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCC-CCcccCch----HhCCCCCCEEEecCC-CCCCCc
Confidence 4556665554 33333321 123666666666665 344443
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.03 E-value=0.04 Score=26.69 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=14.8
Q ss_pred CccEEEEeCCCCCceecCCC
Q 046905 180 SLEDLIVTGCCNMKIFTSGD 199 (225)
Q Consensus 180 ~L~~L~I~~C~~L~~lp~~~ 199 (225)
+|++|++++| +++.+|..+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 4788888888 888888654
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.55 E-value=0.06 Score=46.30 Aligned_cols=120 Identities=17% Similarity=0.078 Sum_probs=61.9
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccc-cCC---CCCcccc----cccccccccccc
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASC-DQG---DSDVAGA----NLEEEILFSKLR 154 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~-~~~---~~~~~~~----~~~~~~~~p~L~ 154 (225)
..+++|+.|++.++ .+..+ +......++|+.|++++.. +..++... ... ...++.- .......+.++.
T Consensus 160 ~~l~~L~~L~l~~N-~l~~l--~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~ 235 (394)
T COG4886 160 RNLPNLKNLDLSFN-DLSDL--PKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS 235 (394)
T ss_pred hccccccccccCCc-hhhhh--hhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhccccc
Confidence 34778888888877 34444 2222367778888887764 55554321 000 0000000 001122233333
Q ss_pred eeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 155 YMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 155 ~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
.+. +.+-+...... ....+++++.|.+.++ ++..++. ...+.+++.++++..
T Consensus 236 ~l~---l~~n~~~~~~~--~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 236 GLE---LSNNKLEDLPE--SIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccc---cCCceeeeccc--hhccccccceeccccc-ccccccc-ccccCccCEEeccCc
Confidence 333 22222111000 1234677999998876 6677765 567788888888754
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.88 E-value=0.098 Score=44.98 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=49.0
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC---CCCccc--cc--cccccccccccee
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG---DSDVAG--AN--LEEEILFSKLRYM 156 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~---~~~~~~--~~--~~~~~~~p~L~~L 156 (225)
..++|+.|++++. ++..+ +.......+|++|.+.+-..++.+....... ...... .. ......++.|+.|
T Consensus 184 ~~~~L~~L~ls~N-~i~~l--~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 184 NLSNLNNLDLSGN-KISDL--PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260 (394)
T ss_pred hhhhhhheeccCC-ccccC--chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccccccee
Confidence 4667777777776 44444 2222233447777776653222111100000 000000 00 1233455667777
Q ss_pred ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceec
Q 046905 157 TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFT 196 (225)
Q Consensus 157 ~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp 196 (225)
.+.+.. +.++.. ...+.+++.|++.+-......|
T Consensus 261 ~~s~n~-i~~i~~-----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 261 DLSNNQ-ISSISS-----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccc-cccccc-----ccccCccCEEeccCccccccch
Confidence 765542 222222 1357889999988754444344
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=0.054 Score=44.75 Aligned_cols=64 Identities=30% Similarity=0.337 Sum_probs=36.7
Q ss_pred HHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 43 LEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 43 ~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
+.+||.|+.|+++|..+........ ....+|+.|.+-+-. |.--...+....+|.+++|+++.-
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp---------------~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLP---------------LPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCc---------------ccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccc
Confidence 4688999999998887765543210 124577777776542 110001223345677777777654
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.33 E-value=0.068 Score=43.02 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=7.0
Q ss_pred ccCCcEEEEecc
Q 046905 46 LHSLETLHLSCT 57 (225)
Q Consensus 46 l~~L~~L~l~c~ 57 (225)
|++||+|.++|.
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 556666666444
No 51
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.17 E-value=0.082 Score=45.46 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=20.8
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceE
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEI 62 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~ 62 (225)
.|++|..|++++. .+..+|.+ .+.+..|+.|+++-.++..+
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPEE-MGSLVRLQTLNLSFNRFRML 473 (565)
T ss_pred hhhcceeeecccc-hhhhcchh-hhhhhhhheecccccccccc
Confidence 3556666666642 24445555 34555566666633333333
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=91.11 E-value=0.057 Score=44.73 Aligned_cols=39 Identities=23% Similarity=0.166 Sum_probs=20.6
Q ss_pred cccccccceeecCcC--CCcceeecCCCccceeCCCccEEEEeCCC
Q 046905 147 EILFSKLRYMTMLDL--ENLTSFCSGVVDYTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 147 ~~~~p~L~~L~l~~~--~~L~~~~~~~~~~~~~~p~L~~L~I~~C~ 190 (225)
...+-+|..|++++. .++..+. ....+|.|+++.+.+-|
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~-----~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVN-----HIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHhhhhheeccccccchhhHHHhc-----ccccccHHHHHhhcCCC
Confidence 334445566655442 2232222 11347888888887765
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.49 E-value=0.15 Score=25.73 Aligned_cols=16 Identities=38% Similarity=0.881 Sum_probs=12.9
Q ss_pred CCCccEEEEeCCCCCc
Q 046905 178 FPSLEDLIVTGCCNMK 193 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~ 193 (225)
+|.|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4778888888888876
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=87.87 E-value=0.21 Score=41.51 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=14.6
Q ss_pred cccccccccceeecCcCC
Q 046905 145 EEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 145 ~~~~~~p~L~~L~l~~~~ 162 (225)
..+..+|+|+.+.+.+.|
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 456789999999988876
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.73 E-value=0.88 Score=36.78 Aligned_cols=90 Identities=26% Similarity=0.289 Sum_probs=56.9
Q ss_pred ccCccEEEEeeC--CccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 21 FGRLRRLEVVRD--DVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 21 l~~L~~L~l~~~--~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
+++||.|.++.. .....++. +...+|+|++|.++-..+..+-.. .....++||..|++.+|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl--------------~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTL--------------RPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccccccc--------------chhhhhcchhhhhcccCCc
Confidence 779999999874 32233333 245679999999844444432111 1223478899999999965
Q ss_pred ccccCC--chHHhhcccCCEEEEecCcccc
Q 046905 99 LMNLVP--SSVAKSLERLVTLRVSGCSAMT 126 (225)
Q Consensus 99 L~~l~~--~~~~~~l~~L~~L~I~~C~~L~ 126 (225)
.. +-- ......+|+|+.|+-.++..-+
T Consensus 129 ~~-l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 129 TN-LDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred cc-cccHHHHHHHHhhhhccccccccCCcc
Confidence 44 211 1234568999998888877543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.94 E-value=1.1 Score=37.34 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=22.6
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV 128 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l 128 (225)
-++.|+...|.-......-....-|||+..+.+..|+ ++..
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~ 214 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE 214 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch
Confidence 4555555555433211111223458899998888887 5543
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=79.04 E-value=0.79 Score=39.89 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=43.0
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccc---cccccccc--ccccccccccceEecc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLVVF 94 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~i~ 94 (225)
.|.+|..|.+.+......... +..+++|++|+++-..+..+........ ..+....+ ......+++|+.+++.
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cccceeeeeccccchhhcccc--hhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence 355666666665443332221 3456677777764344444322211110 00000000 0112225666777766
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
++. +..+.... ...+.+|+.+++.+..
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 663 22221000 3556666666666543
No 58
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=79.00 E-value=0.74 Score=21.77 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=11.9
Q ss_pred CCCccccccccccc
Q 046905 2 NYLDKDIQVIFQGD 15 (225)
Q Consensus 2 ~~~~~~l~~~~~~~ 15 (225)
||.+++++.+|+|.
T Consensus 6 ~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 6 NMPYSKLEKLWEGV 19 (20)
T ss_pred ECCCCChHHhcCcc
Confidence 67889999999984
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=78.96 E-value=3.6 Score=32.31 Aligned_cols=11 Identities=27% Similarity=0.473 Sum_probs=5.2
Q ss_pred ccccceEeccC
Q 046905 85 FGNLTHLVVFS 95 (225)
Q Consensus 85 l~~L~~L~i~~ 95 (225)
+|+|+.|.+.+
T Consensus 87 ~p~l~~L~Ltn 97 (233)
T KOG1644|consen 87 LPNLKTLILTN 97 (233)
T ss_pred ccccceEEecC
Confidence 44455554444
No 60
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=78.76 E-value=0.1 Score=46.71 Aligned_cols=30 Identities=10% Similarity=-0.050 Sum_probs=17.0
Q ss_pred ccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 181 LEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 181 L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
|.+|++ .|.++.++|-.+.++..|++|-++
T Consensus 213 Li~lDf-ScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 213 LIRLDF-SCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred eeeeec-ccCceeecchhhhhhhhheeeeec
Confidence 444443 355666666655566666666655
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.97 E-value=0.21 Score=41.00 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=21.9
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEe
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVS 120 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~ 120 (225)
+.+.++|...+| +|.++ +....||.||.|.++
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLS 49 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLS 49 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEee
Confidence 456677777777 45555 456678888877765
No 62
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=75.65 E-value=0.48 Score=40.75 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=28.9
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEe
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIF 63 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~ 63 (225)
|...-+....+++..+ .++.+|...++.+++|++|+++=..++.+.
T Consensus 62 P~~LP~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~ 107 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIA 107 (498)
T ss_pred cccCCCcceEEEeccC-CcccCChhhccchhhhceecccccchhhcC
Confidence 3333345666777643 356677777777888888888555555553
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.46 E-value=21 Score=24.77 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=37.2
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
..+|+.+.+.+ .++.+. ......+++|+.+.+.. +++.+... .....++|+.+.+.+ ++
T Consensus 11 ~~~l~~i~~~~--~~~~I~-~~~F~~~~~l~~i~~~~--~~~~i~~~--------------~F~~~~~l~~i~~~~--~~ 69 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIG-ENAFSNCTSLKSINFPN--NLTSIGDN--------------AFSNCKSLESITFPN--NL 69 (129)
T ss_dssp -TT--EEEETS--T--EE--TTTTTT-TT-SEEEESS--TTSCE-TT--------------TTTT-TT-EEEEETS--TT
T ss_pred CCCCCEEEECC--CeeEeC-hhhcccccccccccccc--ccccccee--------------eeecccccccccccc--cc
Confidence 34566666552 344332 12233455666666654 24443211 112233456666643 44
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEec
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYS 211 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~ 211 (225)
..+.... ...++.|+.+.+.. .++.++... ... +++.+.+.
T Consensus 70 ~~i~~~~---F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 70 KSIGDNA---FSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -EE-TTT---TTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccccc---ccccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 4444332 12356666666632 455555433 233 66666654
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=72.07 E-value=1.7 Score=37.82 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=23.3
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEec
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFS 64 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~ 64 (225)
+..++.+.+......... .-+..+.+|++|.+....++.+..
T Consensus 71 l~~l~~l~l~~n~i~~~~--~~l~~~~~l~~l~l~~n~i~~i~~ 112 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKIL--NHLSKLKSLEALDLYDNKIEKIEN 112 (414)
T ss_pred hHhHHhhccchhhhhhhh--cccccccceeeeeccccchhhccc
Confidence 455666665442221111 113567888888886666666654
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=67.96 E-value=9.3 Score=30.12 Aligned_cols=88 Identities=19% Similarity=0.205 Sum_probs=48.3
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
.+++|..|.+.+- ++..+. +.....+|+|..|.+.+-. +.++..- .....+|+|++|++.+-|-
T Consensus 62 ~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNs-i~~l~dl-------------~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNS-IQELGDL-------------DPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred CccccceEEecCC-cceeec-cchhhhccccceEEecCcc-hhhhhhc-------------chhccCCccceeeecCCch
Confidence 3677888887765 455553 3445567888888887753 4443211 2345677777777765532
Q ss_pred ccee-ecCCCccceeCCCccEEEEeCC
Q 046905 164 LTSF-CSGVVDYTFKFPSLEDLIVTGC 189 (225)
Q Consensus 164 L~~~-~~~~~~~~~~~p~L~~L~I~~C 189 (225)
=..- +... ....+|+|+.|+..+-
T Consensus 126 ~~k~~YR~y--vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 126 EHKKNYRLY--VLYKLPSLRTLDFQKV 150 (233)
T ss_pred hcccCceeE--EEEecCcceEeehhhh
Confidence 1100 0000 0123677777665543
No 66
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=65.58 E-value=4.7 Score=34.22 Aligned_cols=149 Identities=17% Similarity=0.087 Sum_probs=73.1
Q ss_pred cccCccEEEEeeCCccccCCHh---HHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVG---LLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSC 96 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~---~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C 96 (225)
+-++||++...++..-..-... .++..+.|+.+.+.-..+..- |.. .+......+|+|+.|++.+-
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e----G~~-------al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE----GVT-------ALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCc----hhH-------HHHHHHHhCCcceeeecccc
Confidence 3458888888764432221111 234456777776622222110 000 00112335788999998865
Q ss_pred cCccccCC---chHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCc
Q 046905 97 KKLMNLVP---SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVD 173 (225)
Q Consensus 97 ~~L~~l~~---~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~ 173 (225)
- ++.... ......+++|++|++.+|- ++.=...... ..-...+|+|+.|.+.++.-=..-..-...
T Consensus 224 t-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~---------~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 224 T-FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFV---------DALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred h-hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHH---------HHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 2 221110 1233467889999999995 3221000000 011224888888888777431110000000
Q ss_pred cceeCCCccEEEEeCCC
Q 046905 174 YTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~ 190 (225)
+....|.|+.|.+.+|.
T Consensus 293 ~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhcchhhHHhcCCccc
Confidence 11236888888888874
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=63.70 E-value=4.3 Score=19.98 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=14.8
Q ss_pred CCCccEEEEeCCCCCceecCC
Q 046905 178 FPSLEDLIVTGCCNMKIFTSG 198 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~ 198 (225)
+++|++|++.++ +++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 367888888776 77877754
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=63.70 E-value=4.3 Score=19.98 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=14.8
Q ss_pred CCCccEEEEeCCCCCceecCC
Q 046905 178 FPSLEDLIVTGCCNMKIFTSG 198 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~ 198 (225)
+++|++|++.++ +++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 367888888776 77877754
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=59.73 E-value=2.3 Score=39.80 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=52.0
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Ccccc--ccccccc--ccccccccccceEecc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLES--HVGVSKL--ALIKISFGNLTHLVVF 94 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~~--~l~~~~l--~~~~~~l~~L~~L~i~ 94 (225)
++.|+.|+++++...+ ...+..++.|++|+|+-..+..++..+ ++.-. +++...+ .-....+.+|+.|+++
T Consensus 186 l~ale~LnLshNk~~~---v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK---VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhh---hHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence 5678889998755332 223678999999999444455555432 11100 1111111 0123346677777775
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
+- -+....-...+..+..|..|++.+-+
T Consensus 263 yN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 263 YN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred Hh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 43 12222112234556777788877644
No 70
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=57.41 E-value=6.6 Score=34.08 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=17.1
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYK 60 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~ 60 (225)
+++|++|+++++... .+-...+..+..+++|.+.-.+++
T Consensus 273 L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred cccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHH
Confidence 455566666543322 222222344555555555333333
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.22 E-value=7.4 Score=18.70 Aligned_cols=11 Identities=27% Similarity=0.153 Sum_probs=5.0
Q ss_pred cccceEeccCc
Q 046905 86 GNLTHLVVFSC 96 (225)
Q Consensus 86 ~~L~~L~i~~C 96 (225)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 45555555555
No 72
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=54.69 E-value=2.7 Score=38.05 Aligned_cols=97 Identities=22% Similarity=0.201 Sum_probs=57.9
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCc-cc---ccccc---cccccccccccccceEec
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGC-LE---SHVGV---SKLALIKISFGNLTHLVV 93 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~-~~---~~l~~---~~l~~~~~~l~~L~~L~i 93 (225)
+--|+.|.+++++ +..+|.. ++.++.|..|+..|..+.+++...+. .. .++.. ..+++.... -.|..|++
T Consensus 142 ~lpLkvli~sNNk-l~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDf 218 (722)
T KOG0532|consen 142 DLPLKVLIVSNNK-LTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDF 218 (722)
T ss_pred cCcceeEEEecCc-cccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-Cceeeeec
Confidence 3357888888643 4556655 45777888888866666666543221 11 11111 223333332 24677777
Q ss_pred cCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 94 FSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
+ |.++..+ |.....|.+|+.|.+++-+
T Consensus 219 S-cNkis~i--Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 219 S-CNKISYL--PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred c-cCceeec--chhhhhhhhheeeeeccCC
Confidence 6 6677777 5566788888888887755
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=28.50 E-value=34 Score=17.27 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=12.3
Q ss_pred CCccEEEEeCCCCCceecC
Q 046905 179 PSLEDLIVTGCCNMKIFTS 197 (225)
Q Consensus 179 p~L~~L~I~~C~~L~~lp~ 197 (225)
++|+.|.+++ .+|+++|.
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4677777766 46777775
No 74
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=21.37 E-value=9.9 Score=35.80 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=11.2
Q ss_pred cccccceEeccCccC
Q 046905 84 SFGNLTHLVVFSCKK 98 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~ 98 (225)
.+..|+.|.+.+-+-
T Consensus 277 sLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 277 SLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHHHHhhcCCcc
Confidence 467789998887653
Done!