Query 046905
Match_columns 225
No_of_seqs 181 out of 1234
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 1.2E-13 4E-18 114.9 13.5 120 85-212 182-310 (328)
2 4fcg_A Uncharacterized protein 99.4 2.5E-12 8.5E-17 106.8 14.6 126 81-213 145-287 (328)
3 2xwt_C Thyrotropin receptor; s 99.3 5.1E-12 1.8E-16 100.0 10.5 42 21-63 30-72 (239)
4 2o6q_A Variable lymphocyte rec 99.3 3.3E-11 1.1E-15 97.1 11.2 177 16-215 31-217 (270)
5 2xwt_C Thyrotropin receptor; s 99.3 3.6E-11 1.2E-15 95.1 11.1 170 6-215 41-217 (239)
6 4ezg_A Putative uncharacterize 99.3 1.8E-11 6.1E-16 94.1 8.7 153 17-214 39-192 (197)
7 1ozn_A Reticulon 4 receptor; N 99.2 5.6E-11 1.9E-15 96.3 11.7 191 16-215 26-237 (285)
8 3zyj_A Leucine-rich repeat-con 99.2 5.4E-11 1.8E-15 102.4 11.4 201 5-215 73-291 (440)
9 2ast_B S-phase kinase-associat 99.2 2.4E-12 8.3E-17 106.5 1.4 176 20-213 91-282 (336)
10 3zyj_A Leucine-rich repeat-con 99.2 1E-10 3.5E-15 100.6 11.6 193 15-215 57-267 (440)
11 3zyi_A Leucine-rich repeat-con 99.2 9.1E-11 3.1E-15 101.3 10.6 193 15-215 68-278 (452)
12 2z80_A TOLL-like receptor 2, v 99.2 1.4E-10 4.9E-15 96.8 11.2 161 15-211 45-206 (353)
13 3zyi_A Leucine-rich repeat-con 99.2 1.1E-10 3.9E-15 100.6 10.7 201 5-215 84-302 (452)
14 2ast_B S-phase kinase-associat 99.2 8.4E-12 2.9E-16 103.3 2.8 153 19-189 115-282 (336)
15 3m19_A Variable lymphocyte rec 99.2 2.6E-10 9E-15 90.8 11.0 163 15-215 28-191 (251)
16 3o53_A Protein LRIM1, AGAP0063 99.1 1.2E-10 4.3E-15 95.9 9.0 62 149-216 189-250 (317)
17 1p9a_G Platelet glycoprotein I 99.1 5.6E-10 1.9E-14 91.0 12.6 177 15-214 24-206 (290)
18 1xku_A Decorin; proteoglycan, 99.1 1.3E-09 4.5E-14 90.0 14.3 126 84-215 143-275 (330)
19 1ozn_A Reticulon 4 receptor; N 99.1 2.2E-10 7.5E-15 92.8 9.4 163 20-190 54-236 (285)
20 3rfs_A Internalin B, repeat mo 99.1 5.5E-10 1.9E-14 90.0 11.6 170 20-215 39-217 (272)
21 2id5_A Lingo-1, leucine rich r 99.1 1.3E-09 4.4E-14 94.4 14.6 64 147-215 268-332 (477)
22 2o6q_A Variable lymphocyte rec 99.1 5.6E-10 1.9E-14 89.8 10.6 168 22-215 16-193 (270)
23 2id5_A Lingo-1, leucine rich r 99.1 7.5E-10 2.6E-14 95.9 11.8 200 5-215 41-260 (477)
24 2z80_A TOLL-like receptor 2, v 99.1 5.6E-10 1.9E-14 93.2 10.5 191 20-215 74-313 (353)
25 3oja_A Leucine-rich immune mol 99.1 5.3E-10 1.8E-14 97.6 10.4 122 85-215 119-249 (487)
26 2z62_A TOLL-like receptor 4, v 99.1 1E-09 3.4E-14 88.5 10.6 172 20-214 50-235 (276)
27 2z81_A CD282 antigen, TOLL-lik 99.0 1.2E-09 4.3E-14 96.0 11.4 162 15-211 19-180 (549)
28 3rgz_A Protein brassinosteroid 99.0 8E-10 2.7E-14 101.5 10.5 113 82-215 438-550 (768)
29 3vq2_A TLR4, TOLL-like recepto 99.0 4.5E-10 1.5E-14 100.0 7.8 171 19-213 373-555 (606)
30 1wwl_A Monocyte differentiatio 99.0 1.2E-09 4E-14 89.8 9.6 57 150-215 252-308 (312)
31 1h6t_A Internalin B; cell adhe 99.0 1.2E-09 4E-14 89.1 9.5 163 19-213 43-210 (291)
32 2ft3_A Biglycan; proteoglycan, 99.0 2.4E-09 8.3E-14 88.5 11.4 38 176-214 238-275 (332)
33 1h6u_A Internalin H; cell adhe 99.0 1.5E-09 5.2E-14 89.1 9.9 61 147-215 169-229 (308)
34 3rfs_A Internalin B, repeat mo 99.0 2E-09 6.7E-14 86.8 10.1 173 17-215 14-193 (272)
35 4ecn_A Leucine-rich repeat pro 99.0 1.3E-09 4.5E-14 101.2 10.2 176 16-215 440-656 (876)
36 4ay9_X Follicle-stimulating ho 99.0 1.2E-09 4.2E-14 91.2 9.1 188 15-211 23-231 (350)
37 3o6n_A APL1; leucine-rich repe 99.0 3.9E-09 1.3E-13 89.1 12.2 33 21-54 68-100 (390)
38 4eco_A Uncharacterized protein 99.0 1.1E-09 3.8E-14 98.6 9.1 174 16-215 198-414 (636)
39 4fmz_A Internalin; leucine ric 99.0 1.7E-09 5.8E-14 89.8 9.3 164 19-214 41-210 (347)
40 2z66_A Variable lymphocyte rec 99.0 2.6E-09 8.9E-14 87.2 10.2 192 16-215 22-235 (306)
41 3t6q_A CD180 antigen; protein- 99.0 5.4E-09 1.9E-13 93.0 12.8 187 20-213 299-510 (606)
42 1ogq_A PGIP-2, polygalacturona 99.0 3.5E-09 1.2E-13 87.1 10.5 125 82-215 121-256 (313)
43 1h6u_A Internalin H; cell adhe 99.0 2.1E-09 7.1E-14 88.3 9.1 164 19-215 38-207 (308)
44 2z66_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 89.3 7.5 173 20-215 76-260 (306)
45 4fmz_A Internalin; leucine ric 99.0 3.6E-09 1.2E-13 87.8 10.5 165 19-215 63-233 (347)
46 3oja_B Anopheles plasmodium-re 99.0 2.5E-09 8.6E-14 95.5 10.0 36 177-215 322-357 (597)
47 3oja_B Anopheles plasmodium-re 99.0 4.6E-09 1.6E-13 93.8 11.6 99 21-122 74-181 (597)
48 1m9s_A Internalin B; cell inva 98.9 5.6E-09 1.9E-13 93.5 11.9 103 83-214 106-208 (605)
49 3rgz_A Protein brassinosteroid 98.9 1.5E-09 5E-14 99.8 8.2 125 85-215 393-526 (768)
50 3o6n_A APL1; leucine-rich repe 98.9 7.3E-09 2.5E-13 87.5 12.0 181 20-215 139-351 (390)
51 4eco_A Uncharacterized protein 98.9 8.3E-09 2.8E-13 92.9 12.6 159 22-215 433-599 (636)
52 2z63_A TOLL-like receptor 4, v 98.9 3.9E-09 1.3E-13 93.1 10.3 64 146-214 465-529 (570)
53 3e6j_A Variable lymphocyte rec 98.9 3.7E-09 1.3E-13 83.1 9.0 136 16-189 34-169 (229)
54 2z7x_B TOLL-like receptor 1, v 98.9 2.2E-09 7.4E-14 94.0 8.2 59 151-215 421-480 (520)
55 3v47_A TOLL-like receptor 5B a 98.9 6.2E-09 2.1E-13 89.4 10.7 41 82-123 125-165 (455)
56 4ezg_A Putative uncharacterize 98.9 9.1E-09 3.1E-13 78.8 10.6 129 19-190 63-192 (197)
57 1ogq_A PGIP-2, polygalacturona 98.9 4.3E-09 1.5E-13 86.6 9.2 170 22-215 50-233 (313)
58 2z62_A TOLL-like receptor 4, v 98.9 5.9E-09 2E-13 83.9 9.7 175 16-215 22-212 (276)
59 1h6t_A Internalin B; cell adhe 98.9 5.1E-09 1.7E-13 85.3 9.3 166 16-215 18-190 (291)
60 2z81_A CD282 antigen, TOLL-lik 98.9 1.4E-09 4.8E-14 95.6 5.6 174 19-215 47-235 (549)
61 4ay9_X Follicle-stimulating ho 98.9 1.3E-08 4.3E-13 85.0 11.1 180 25-215 12-214 (350)
62 3m19_A Variable lymphocyte rec 98.9 6.1E-09 2.1E-13 82.8 8.7 134 20-190 57-190 (251)
63 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 3.5E-09 1.2E-13 93.7 7.9 59 151-215 450-509 (562)
64 1o6v_A Internalin A; bacterial 98.9 9.9E-09 3.4E-13 88.8 10.2 164 18-215 217-387 (466)
65 1xku_A Decorin; proteoglycan, 98.9 1.6E-08 5.4E-13 83.5 10.8 174 15-215 114-305 (330)
66 3t6q_A CD180 antigen; protein- 98.9 1E-08 3.5E-13 91.3 10.1 187 20-215 276-488 (606)
67 2o6s_A Variable lymphocyte rec 98.9 9.8E-09 3.4E-13 79.2 8.8 138 15-189 21-158 (208)
68 4glp_A Monocyte differentiatio 98.8 5.8E-09 2E-13 85.5 7.4 175 19-215 114-306 (310)
69 3vq2_A TLR4, TOLL-like recepto 98.8 2E-08 6.9E-13 89.4 11.4 186 19-215 282-485 (606)
70 4ecn_A Leucine-rich repeat pro 98.8 2.2E-08 7.4E-13 93.1 11.8 159 22-215 673-839 (876)
71 4glp_A Monocyte differentiatio 98.8 3.6E-09 1.2E-13 86.8 5.8 175 21-215 90-284 (310)
72 3o53_A Protein LRIM1, AGAP0063 98.8 6.7E-09 2.3E-13 85.4 7.4 60 149-215 167-226 (317)
73 2z63_A TOLL-like receptor 4, v 98.8 3.3E-09 1.1E-13 93.6 5.6 159 16-213 341-504 (570)
74 3v47_A TOLL-like receptor 5B a 98.8 1.4E-08 4.8E-13 87.2 9.2 86 20-123 28-114 (455)
75 2v70_A SLIT-2, SLIT homolog 2 98.8 2.2E-08 7.6E-13 78.2 9.5 35 178-213 128-163 (220)
76 1xeu_A Internalin C; cellular 98.8 1.3E-08 4.5E-13 81.7 8.3 144 19-212 38-181 (263)
77 2ell_A Acidic leucine-rich nuc 98.8 9.2E-09 3.1E-13 76.6 6.5 144 17-197 19-164 (168)
78 1m9s_A Internalin B; cell inva 98.8 7.5E-09 2.6E-13 92.7 7.0 147 19-215 40-187 (605)
79 1ziw_A TOLL-like receptor 3; i 98.8 3.4E-08 1.2E-12 89.1 11.0 63 148-215 533-596 (680)
80 4g8a_A TOLL-like receptor 4; l 98.8 2.3E-08 7.8E-13 88.9 9.4 143 15-195 45-188 (635)
81 1o6v_A Internalin A; bacterial 98.8 4.7E-08 1.6E-12 84.5 11.0 163 19-215 196-365 (466)
82 2p1m_B Transport inhibitor res 98.7 1.7E-09 5.7E-14 95.9 1.4 164 20-211 64-243 (594)
83 3oja_A Leucine-rich immune mol 98.7 4.1E-08 1.4E-12 85.7 10.2 180 21-215 33-226 (487)
84 3j0a_A TOLL-like receptor 5; m 98.7 2.2E-08 7.4E-13 92.9 8.4 105 16-123 19-134 (844)
85 1wwl_A Monocyte differentiatio 98.7 7.5E-09 2.6E-13 85.0 4.5 177 21-215 94-286 (312)
86 3j0a_A TOLL-like receptor 5; m 98.7 1.7E-08 5.9E-13 93.6 7.4 27 33-63 14-40 (844)
87 3bz5_A Internalin-J, INLJ; leu 98.7 1E-07 3.5E-12 82.5 11.4 41 19-62 39-79 (457)
88 1p9a_G Platelet glycoprotein I 98.7 9.3E-08 3.2E-12 77.8 10.5 170 19-215 7-184 (290)
89 3bz5_A Internalin-J, INLJ; leu 98.7 5.6E-08 1.9E-12 84.1 9.6 142 19-215 61-203 (457)
90 2v9t_B SLIT homolog 2 protein 98.7 5.2E-08 1.8E-12 76.0 8.6 107 85-213 55-162 (220)
91 1xeu_A Internalin C; cellular 98.7 1.3E-08 4.5E-13 81.7 4.7 149 16-215 13-162 (263)
92 1ziw_A TOLL-like receptor 3; i 98.7 5.7E-08 2E-12 87.6 9.3 38 16-54 19-56 (680)
93 2p1m_B Transport inhibitor res 98.7 4.9E-09 1.7E-13 92.9 2.0 104 20-123 103-222 (594)
94 2o6s_A Variable lymphocyte rec 98.7 1.4E-07 4.7E-12 72.6 9.9 141 35-215 19-160 (208)
95 2xot_A Amphoterin-induced prot 98.7 2E-08 6.9E-13 84.2 5.4 165 16-215 33-201 (361)
96 2v9t_B SLIT homolog 2 protein 98.7 1.8E-07 6.2E-12 72.9 10.6 138 16-190 26-163 (220)
97 4g8a_A TOLL-like receptor 4; l 98.6 4.6E-08 1.6E-12 86.9 7.4 170 20-213 395-577 (635)
98 2z7x_B TOLL-like receptor 1, v 98.6 4.8E-07 1.6E-11 79.0 13.5 111 82-215 344-456 (520)
99 2ft3_A Biglycan; proteoglycan, 98.6 7.8E-08 2.7E-12 79.4 8.0 188 16-215 48-253 (332)
100 2ell_A Acidic leucine-rich nuc 98.6 4.7E-08 1.6E-12 72.7 4.7 130 45-214 22-158 (168)
101 3g06_A SSPH2 (leucine-rich rep 98.6 6.6E-07 2.3E-11 80.3 12.8 43 16-63 55-97 (622)
102 3cvr_A Invasion plasmid antige 98.5 5.5E-07 1.9E-11 80.0 11.6 158 16-215 74-242 (571)
103 2je0_A Acidic leucine-rich nuc 98.5 1.8E-08 6.1E-13 73.6 1.7 107 20-161 15-123 (149)
104 3g06_A SSPH2 (leucine-rich rep 98.5 1E-06 3.5E-11 79.1 13.4 37 178-215 260-296 (622)
105 3ogk_B Coronatine-insensitive 98.5 2.4E-08 8.3E-13 88.5 2.5 35 20-54 291-325 (592)
106 2v70_A SLIT-2, SLIT homolog 2 98.5 9.7E-07 3.3E-11 68.7 11.3 140 15-190 25-164 (220)
107 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 5.3E-07 1.8E-11 79.7 10.5 104 16-123 46-157 (562)
108 3e6j_A Variable lymphocyte rec 98.5 3E-07 1E-11 72.1 7.7 109 20-162 62-170 (229)
109 2xot_A Amphoterin-induced prot 98.5 1.8E-07 6.1E-12 78.4 5.7 126 5-161 48-173 (361)
110 1jl5_A Outer protein YOPM; leu 98.5 5.6E-07 1.9E-11 77.8 9.0 112 86-214 173-288 (454)
111 2je0_A Acidic leucine-rich nuc 98.4 6E-08 2.1E-12 70.7 2.2 126 45-211 15-148 (149)
112 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4E-12 71.5 3.6 89 87-194 62-154 (176)
113 3ogk_B Coronatine-insensitive 98.4 2.1E-07 7.2E-12 82.4 5.0 59 149-211 486-546 (592)
114 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7E-12 70.1 3.9 38 87-125 115-152 (176)
115 2o6r_A Variable lymphocyte rec 98.4 8.3E-07 2.9E-11 66.5 7.3 88 17-122 23-110 (177)
116 1a9n_A U2A', U2A'; complex (nu 98.4 5.8E-07 2E-11 67.4 6.1 136 20-191 17-152 (176)
117 2wfh_A SLIT homolog 2 protein 98.3 1.8E-06 6.1E-11 65.9 8.2 114 15-162 24-137 (193)
118 1w8a_A SLIT protein; signaling 98.3 1.1E-06 3.7E-11 66.9 6.8 116 15-162 22-137 (192)
119 1ds9_A Outer arm dynein; leuci 98.3 2.7E-08 9.1E-13 76.3 -2.3 145 23-209 24-180 (198)
120 1w8a_A SLIT protein; signaling 98.3 4.6E-06 1.6E-10 63.4 10.1 109 86-215 29-138 (192)
121 1jl5_A Outer protein YOPM; leu 98.3 3.5E-06 1.2E-10 72.8 10.1 55 151-215 173-227 (454)
122 2ca6_A RAN GTPase-activating p 98.3 2.2E-07 7.5E-12 78.3 2.4 37 177-214 242-285 (386)
123 2o6r_A Variable lymphocyte rec 98.3 4.5E-06 1.5E-10 62.4 9.3 34 178-212 99-133 (177)
124 2wfh_A SLIT homolog 2 protein 98.3 5.4E-06 1.8E-10 63.2 9.4 108 85-215 30-138 (193)
125 2ca6_A RAN GTPase-activating p 98.2 3.1E-07 1.1E-11 77.3 2.2 64 148-215 241-315 (386)
126 4b8c_D Glucose-repressible alc 98.2 1.5E-06 5.2E-11 79.3 6.6 109 82-215 220-328 (727)
127 1a9n_A U2A', U2A'; complex (nu 98.2 3.6E-06 1.2E-10 63.0 6.8 106 85-213 41-150 (176)
128 3cvr_A Invasion plasmid antige 98.2 6.7E-06 2.3E-10 73.1 9.1 147 23-215 60-219 (571)
129 4b8c_D Glucose-repressible alc 98.1 2.3E-06 8E-11 78.1 6.0 109 43-191 220-328 (727)
130 1dce_A Protein (RAB geranylger 98.1 5.1E-06 1.8E-10 73.8 7.7 121 47-209 441-566 (567)
131 2ra8_A Uncharacterized protein 98.0 1.3E-05 4.6E-10 67.2 7.0 166 20-213 137-317 (362)
132 3goz_A Leucine-rich repeat-con 98.0 5.3E-06 1.8E-10 69.3 4.5 180 22-215 80-296 (362)
133 1dce_A Protein (RAB geranylger 97.9 1.6E-05 5.6E-10 70.5 7.4 126 22-185 441-566 (567)
134 3sb4_A Hypothetical leucine ri 97.9 5.6E-05 1.9E-09 62.1 10.1 55 150-211 249-305 (329)
135 1z7x_W Ribonuclease inhibitor; 97.9 6.3E-07 2.2E-11 76.9 -2.0 116 87-215 86-211 (461)
136 1z7x_W Ribonuclease inhibitor; 97.9 9.4E-07 3.2E-11 75.8 -1.4 34 23-57 86-124 (461)
137 2r9u_A Variable lymphocyte rec 97.9 1.9E-05 6.4E-10 59.1 5.6 91 15-123 26-116 (174)
138 3goz_A Leucine-rich repeat-con 97.8 3.1E-06 1.1E-10 70.7 0.9 62 152-215 168-237 (362)
139 3sb4_A Hypothetical leucine ri 97.8 7.9E-05 2.7E-09 61.2 9.4 102 85-210 225-328 (329)
140 1ds9_A Outer arm dynein; leuci 97.8 4E-06 1.4E-10 64.0 1.3 106 19-162 45-151 (198)
141 2r9u_A Variable lymphocyte rec 97.7 8.8E-05 3E-09 55.4 7.3 83 86-189 33-115 (174)
142 3g39_A Variable lymphocyte rec 97.7 4.7E-05 1.6E-09 56.7 5.6 89 16-122 24-112 (170)
143 2ifg_A High affinity nerve gro 97.7 0.00014 4.7E-09 60.0 8.2 87 108-213 27-113 (347)
144 3g39_A Variable lymphocyte rec 97.6 0.00022 7.6E-09 52.9 7.4 35 86-122 30-64 (170)
145 2ra8_A Uncharacterized protein 97.5 5.7E-05 1.9E-09 63.3 3.2 136 20-190 170-318 (362)
146 2ifg_A High affinity nerve gro 97.4 0.0003 1E-08 58.0 6.6 33 22-54 31-63 (347)
147 3un9_A NLR family member X1; l 97.2 7.9E-06 2.7E-10 68.8 -5.4 87 20-123 70-166 (372)
148 3un9_A NLR family member X1; l 96.5 0.00021 7E-09 60.1 -1.7 144 22-190 101-250 (372)
149 4fdw_A Leucine rich hypothetic 96.4 0.021 7.1E-07 48.3 10.1 35 176-212 297-332 (401)
150 4fdw_A Leucine rich hypothetic 96.4 0.029 9.8E-07 47.4 10.9 57 151-212 248-309 (401)
151 3rw6_A Nuclear RNA export fact 94.3 0.054 1.9E-06 43.2 5.1 63 44-123 167-231 (267)
152 3rw6_A Nuclear RNA export fact 93.3 0.04 1.4E-06 43.9 2.5 86 84-185 168-257 (267)
153 1io0_A Tropomodulin; LRR prote 90.4 0.025 8.6E-07 42.2 -1.7 38 85-123 64-104 (185)
154 1io0_A Tropomodulin; LRR prote 89.3 0.036 1.2E-06 41.4 -1.6 114 84-214 34-162 (185)
155 4fs7_A Uncharacterized protein 86.3 2.8 9.6E-05 34.6 8.1 32 21-54 229-260 (394)
156 4gt6_A Cell surface protein; l 77.2 8.5 0.00029 31.6 7.8 59 150-215 310-369 (394)
157 3rfe_A Platelet glycoprotein I 73.5 1.9 6.4E-05 30.0 2.3 31 23-54 32-62 (130)
158 3rfe_A Platelet glycoprotein I 73.0 3.3 0.00011 28.7 3.5 34 179-213 31-65 (130)
159 4gt6_A Cell surface protein; l 71.1 8.1 0.00028 31.8 6.1 104 21-161 264-367 (394)
160 4fs7_A Uncharacterized protein 70.3 3.8 0.00013 33.8 3.9 12 43-54 293-304 (394)
161 4h09_A Hypothetical leucine ri 68.0 17 0.00058 29.5 7.4 32 21-54 216-247 (379)
162 4h09_A Hypothetical leucine ri 64.0 9 0.00031 31.2 4.9 111 21-169 239-349 (379)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=1.2e-13 Score=114.89 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=72.8
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC-CC---CCccc-----ccccccccccccce
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-GD---SDVAG-----ANLEEEILFSKLRY 155 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-~~---~~~~~-----~~~~~~~~~p~L~~ 155 (225)
+++|+.|++.++ .++.+ +.....+++|++|++.+|. +..++..-.. .. .+.++ ..+.....+++|++
T Consensus 182 l~~L~~L~L~~n-~l~~l--p~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIRSL--PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp STTCCEEEEEEE-CCCCC--CGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCCCEEECcCC-CcCcc--hHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 555666666655 34433 2334555666666666554 3333221000 00 00000 01123456788888
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecC
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSE 212 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~ 212 (225)
|.+.+|..+..++... ..+++|++|++++|+.+..+|..+..+++|+.+.+..
T Consensus 258 L~L~~n~~~~~~p~~~----~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDI----HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCBCCTTG----GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EECCCCCchhhcchhh----hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 8888888877776532 5688999999999988888888888888888888864
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=2.5e-12 Score=106.80 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=90.1
Q ss_pred ccccccccceEeccCccCccccCCchHH---------hhcccCCEEEEecCcccccccccccCC-C---CCccc----cc
Q 046905 81 IKISFGNLTHLVVFSCKKLMNLVPSSVA---------KSLERLVTLRVSGCSAMTQVVASCDQG-D---SDVAG----AN 143 (225)
Q Consensus 81 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~---------~~l~~L~~L~I~~C~~L~~l~~~~~~~-~---~~~~~----~~ 143 (225)
....+++|+.|++++|..+..+. ... ..+++|++|++.++. +..++..-... . .+.++ ..
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p--~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELP--EPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCC--SCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred HHhcCcCCCEEECCCCCCccccC--hhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcC
Confidence 45568899999999998777652 222 248999999999985 55554321110 0 01110 01
Q ss_pred ccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 144 LEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 144 ~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
+.....+++|++|.+.++.....++... ..+++|++|++.+|..+..+|..+..+++|+.+++.++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~----~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIF----GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCT----TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHh----cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 1235567889999999988877766532 46899999999999999999988889999999999864
No 3
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=5.1e-12 Score=99.95 Aligned_cols=42 Identities=7% Similarity=0.148 Sum_probs=21.7
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEe
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIF 63 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~ 63 (225)
..+|+.|+++++.. ..+|...+..+++|++|++ ++..++.++
T Consensus 30 ~~~l~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~~l~~i~ 72 (239)
T 2xwt_C 30 PPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLE 72 (239)
T ss_dssp CTTCCEEEEESCCC-SEECTTTTTTCTTCCEEEEECCSSCCEEC
T ss_pred CCcccEEEEeCCcc-eEECHHHccCCCCCcEEeCCCCCCcceeC
Confidence 33566666665432 3333333455666666666 444455443
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=3.3e-11 Score=97.08 Aligned_cols=177 Identities=16% Similarity=0.147 Sum_probs=103.4
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---ccccc-cccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLAL-IKISFG 86 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~-~~~~l~ 86 (225)
+|....++++.|+++++.. ..++...+..+++|++|+++-..+..++... .... ..+.. ..+++ ....++
T Consensus 31 ip~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 31 IPSNIPADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp CCSCCCTTCSEEECCSSCC-SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred cCCCCCCCCCEEECcCCCC-CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 4444556888888887553 4445444567888888888333455443311 0000 00110 01111 123456
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcce
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTS 166 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 166 (225)
+|++|++.++ .++.+. +.....+++|+.|+++++. +..++. .....+++|++|.+.++ .++.
T Consensus 110 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~L~~n-~l~~ 171 (270)
T 2o6q_A 110 NLAELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPK--------------GVFDKLTSLKELRLYNN-QLKR 171 (270)
T ss_dssp SCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCSC
T ss_pred CCCEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCCc-CCccCH--------------hHccCCcccceeEecCC-cCcE
Confidence 6777777665 344332 2234566777777776663 443321 12345788999998876 3444
Q ss_pred eecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 167 FCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
+.... ...+++|++|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 172 ~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGA---FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhH---hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 44321 235789999999998 77778764 46789999999986543
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.26 E-value=3.6e-11 Score=95.07 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=122.8
Q ss_pred cccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccccccccccccccccc
Q 046905 6 KDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKIS 84 (225)
Q Consensus 6 ~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 84 (225)
++++.+-.+.+. .+++|+.|+++++..+..++...+..+++|++|++ +|..+..++.. .+..
T Consensus 41 n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~---------------~f~~ 103 (239)
T 2xwt_C 41 THLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD---------------ALKE 103 (239)
T ss_dssp CCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT---------------SEEC
T ss_pred CcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH---------------HhCC
Confidence 334444333332 37899999999876455566544678999999999 78888877542 2334
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCC---EEEEecCcccccccccccCCCCCcccccccccccccccc-eeecCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLV---TLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLR-YMTMLD 160 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~---~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~-~L~l~~ 160 (225)
+++|+.|++.++. ++.+ +. ...+++|+ .|++.+++++..++.. ....+++|+ .|.+.+
T Consensus 104 l~~L~~L~l~~n~-l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~--------------~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVN--------------AFQGLCNETLTLKLYN 165 (239)
T ss_dssp CTTCCEEEEEEEC-CCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTT--------------TTTTTBSSEEEEECCS
T ss_pred CCCCCEEeCCCCC-Cccc--cc-cccccccccccEEECCCCcchhhcCcc--------------cccchhcceeEEEcCC
Confidence 7899999999984 6655 22 56778888 9999999667776521 234578899 999977
Q ss_pred CCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCC-CCeeEEEecCCce
Q 046905 161 LENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLIT-PKRVDAWYSESAC 215 (225)
Q Consensus 161 ~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~-~~L~~l~i~~~~~ 215 (225)
. +++.+.... +..++|++|++.+++.++.+|.. +..+ ++|+.+++.++..
T Consensus 166 n-~l~~i~~~~----~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 166 N-GFTSVQGYA----FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp C-CCCEECTTT----TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred C-CCcccCHhh----cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 6 456666543 33478999999999889988754 4677 8999999987654
No 6
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=1.8e-11 Score=94.15 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=111.1
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
....+++|+.|+++++.. ..+|. +..+++|++|++ +| .+..+. ....+++|++|++.+
T Consensus 39 ~~~~l~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~l~~n-~~~~~~-----------------~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINV-TDLTG--IEYAHNIKDLTINNI-HATNYN-----------------PISGLSNLERLRIMG 97 (197)
T ss_dssp BHHHHHTCCEEEEESSCC-SCCTT--GGGCTTCSEEEEESC-CCSCCG-----------------GGTTCTTCCEEEEEC
T ss_pred ChhhcCCccEEeccCCCc-cChHH--HhcCCCCCEEEccCC-CCCcch-----------------hhhcCCCCCEEEeEC
Confidence 335688999999998653 35563 678999999999 76 454432 233488999999999
Q ss_pred ccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccc
Q 046905 96 CKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYT 175 (225)
Q Consensus 96 C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~ 175 (225)
+ .+.... +.....+++|+.|++.+|. +..... .....+++|++|.+.++..++.+.. .
T Consensus 98 n-~l~~~~-~~~l~~l~~L~~L~Ls~n~-i~~~~~--------------~~l~~l~~L~~L~L~~n~~i~~~~~-----l 155 (197)
T 4ezg_A 98 K-DVTSDK-IPNLSGLTSLTLLDISHSA-HDDSIL--------------TKINTLPKVNSIDLSYNGAITDIMP-----L 155 (197)
T ss_dssp T-TCBGGG-SCCCTTCTTCCEEECCSSB-CBGGGH--------------HHHTTCSSCCEEECCSCTBCCCCGG-----G
T ss_pred C-ccCccc-ChhhcCCCCCCEEEecCCc-cCcHhH--------------HHHhhCCCCCEEEccCCCCccccHh-----h
Confidence 8 455422 2345678999999999986 332110 2345689999999999987776652 2
Q ss_pred eeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 176 FKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
..+++|++|++.+| +++.++ .+..+++|+.+++.++.
T Consensus 156 ~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 156 KTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 46899999999998 567666 56788999999997654
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=5.6e-11 Score=96.30 Aligned_cols=191 Identities=11% Similarity=0.068 Sum_probs=85.7
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---cccccc----cc-ccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVS----KL-ALIKISF 85 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~----~l-~~~~~~l 85 (225)
+|.+..++|++|+++++.. ..++...+..+++|++|+++...+..+.... +... -.+... .+ +.....+
T Consensus 26 ip~~~~~~l~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 26 VPVGIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp CCTTCCTTCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCcCCCCCceEEEeeCCcC-CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 4445566777777776543 3344333566777777777222444442210 0000 001000 01 1122334
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCcc-----cccccccccccccce
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVA-----GANLEEEILFSKLRY 155 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~-----~~~~~~~~~~p~L~~ 155 (225)
++|++|++.++. +..+. +.....+++|++|++.++. +..++...... . .+.+ .........+++|++
T Consensus 105 ~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 105 GRLHTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCCEEECCCCc-CCEEC-HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 556666665552 33221 2233445556666665553 33322110000 0 0000 000011233455666
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
|.+.++. ++.+... ....+++|++|++.++ +++.+|.. +..+++|+++++.++.+
T Consensus 182 L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 182 LLLHQNR-VAHVHPH---AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSSC-CCEECTT---TTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EECCCCc-ccccCHh---HccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 6665553 3333211 1234677777777776 45555432 35667777777775543
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.23 E-value=5.4e-11 Score=102.38 Aligned_cols=201 Identities=14% Similarity=0.122 Sum_probs=115.1
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEecc--CCccc---cccccc---
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSN--EGCLE---SHVGVS--- 76 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~--~~~~~---~~l~~~--- 76 (225)
++++..+-...|. .+++|+.|+++++.. ..++...+..+++|++|+++...+..++.. .+... ..+...
T Consensus 73 ~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 73 ENQIQIIKVNSFK--HLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp SCCCCEECTTTTS--SCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred CCcCCeeCHHHhh--CCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 4445544444443 378899999987653 444544467889999999933356555431 11111 011111
Q ss_pred cccc-ccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC---Cc-----cccccccc
Q 046905 77 KLAL-IKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS---DV-----AGANLEEE 147 (225)
Q Consensus 77 ~l~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~---~~-----~~~~~~~~ 147 (225)
.+++ .+..+++|+.|++.+|..+..+. ......+++|+.|++.+|. +..++........ +. .+......
T Consensus 150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 150 SIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred ccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhh
Confidence 1111 24456788888888877777653 2345667888888888774 5554321110000 00 01111233
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
..+++|+.|.+.++ .++.+.... ...+++|++|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 228 ~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 228 QGLMHLQKLWMIQS-QIQVIERNA---FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCTTCCEEECTTC-CCCEECTTS---STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccCccCCEEECCCC-ceeEEChhh---hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 45566777777665 344443321 235789999999997 67777754 36789999999985543
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=2.4e-12 Score=106.53 Aligned_cols=176 Identities=13% Similarity=0.091 Sum_probs=86.5
Q ss_pred cccCccEEEEeeCCcccc-CCHhHHHhccCCcEEEE-eccccce-Eecc-CCc---cccccccc------cccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATG-FPVGLLEVLHSLETLHL-SCTSYKE-IFSN-EGC---LESHVGVS------KLALIKISFG 86 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~-~p~~~~~~l~~L~~L~l-~c~~l~~-~~~~-~~~---~~~~l~~~------~l~~~~~~l~ 86 (225)
.+++|+.|+++++..... ++. .+..+++|++|++ +|. +.. .+.. ... ..-.+... .++.....++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred cCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 467888888887653322 332 3567888888888 663 321 1100 000 00000000 0111122344
Q ss_pred ccceEeccCccCccccCCchHHhhcc-cCCEEEEecCc-ccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLE-RLVTLRVSGCS-AMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~-~L~~L~I~~C~-~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+|++|++.+|..+.....+.....++ +|++|++.+|. .+..-. -......+|+|++|.+.+|..+
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~-------------l~~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD-------------LSTLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH-------------HHHHHHHCTTCSEEECTTCTTC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH-------------HHHHHhhCCCCCEEeCCCCCcC
Confidence 44444444443333321122333444 44444444443 111000 0012335788888888888765
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
+..... ....+++|++|++.+|..+..- ...+..+++|+.+++.++
T Consensus 236 ~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 KNDCFQ---EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGG---GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHH---HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 432211 1245788999999998744311 012356788999988754
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.20 E-value=1e-10 Score=100.64 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=109.6
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEecc--CCccc---ccccc---ccccc-ccccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSN--EGCLE---SHVGV---SKLAL-IKISF 85 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~--~~~~~---~~l~~---~~l~~-~~~~l 85 (225)
.+|.+..++++.|+++++.. ..++...+..+++|++|+++-..+..+... .+... ..+.. ..+++ .+..+
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred cCCCCCCCCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 46777778999999998664 444444467899999999933346655431 11111 01111 11222 24456
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC--C---Cccc--c-cccccccccccceee
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD--S---DVAG--A-NLEEEILFSKLRYMT 157 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~--~---~~~~--~-~~~~~~~~p~L~~L~ 157 (225)
++|+.|+++++. ++.+. +.....+++|++|++.+|..+..++......- . +.++ . .......+++|+.|.
T Consensus 136 ~~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELD 213 (440)
T ss_dssp SSCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEE
T ss_pred ccCceeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEE
Confidence 788888888773 55442 33456788888888888777766543211100 0 0000 0 001223445666666
Q ss_pred cCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceec-CCCCCCCCeeEEEecCCce
Q 046905 158 MLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFT-SGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 158 l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp-~~~~~~~~L~~l~i~~~~~ 215 (225)
+.++ .++.+.... ...+++|++|++.++ +++.++ ..+..+++|+.|++.++..
T Consensus 214 Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 214 LSGN-HLSAIRPGS---FQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CTTS-CCCEECTTT---TTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CCCC-ccCccChhh---hccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCC
Confidence 6655 344443221 235677888888776 455554 3446678888888876544
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.19 E-value=9.1e-11 Score=101.28 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=102.5
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---ccccc-ccccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLAL-IKISF 85 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~-~~~~l 85 (225)
.+|.+..++++.|+++++.... ++...+..+++|++|+++...+..+.... +... ..+.. ..+++ .+..+
T Consensus 68 ~iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 68 EVPQGIPSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp SCCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred ccCCCCCCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 3555556688888887755433 33333567788888888333455553211 1110 01111 11122 13346
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC--C---Cccc--c-cccccccccccceee
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD--S---DVAG--A-NLEEEILFSKLRYMT 157 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~--~---~~~~--~-~~~~~~~~p~L~~L~ 157 (225)
++|+.|+++++. ++.+. ......+++|+.|++.+|..+..++......- . +.+. . .......+++|+.|.
T Consensus 147 ~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224 (452)
T ss_dssp TTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEE
T ss_pred CCCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEE
Confidence 777777777763 44442 23445677777777777776666543211100 0 0000 0 001233456666666
Q ss_pred cCcCCCcceeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCCce
Q 046905 158 MLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 158 l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~~~ 215 (225)
+.++. ++.+... ....+++|++|++.++ +++.+ |..+..+++|+.|++.++..
T Consensus 225 Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 225 MSGNH-FPEIRPG---SFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CTTSC-CSEECGG---GGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCc-CcccCcc---cccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcC
Confidence 66653 3333221 1235788888888887 45555 44456788899999886644
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.4e-10 Score=96.76 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=83.2
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+.+++|++|+++++.. ..++...+..+++|++|+++...+..+... ....+++|++|+++
T Consensus 45 ~iP~~~~~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 45 SIPSGLTEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEED---------------SFSSLGSLEHLDLS 108 (353)
T ss_dssp SCCTTCCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTT---------------TTTTCTTCCEEECC
T ss_pred cccccccccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCCccCccCHh---------------hcCCCCCCCEEECC
Confidence 35556667899999987653 445544467899999999933356655431 12235666666666
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|++|++.++. +..++.. .....+++|++|.+.++..++.+....
T Consensus 109 ~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~-------------~~~~~l~~L~~L~l~~n~~~~~~~~~~--- 169 (353)
T 2z80_A 109 YN-YLSNLS-SSWFKPLSSLTFLNLLGNP-YKTLGET-------------SLFSHLTKLQILRVGNMDTFTKIQRKD--- 169 (353)
T ss_dssp SS-CCSSCC-HHHHTTCTTCSEEECTTCC-CSSSCSS-------------CSCTTCTTCCEEEEEESSSCCEECTTT---
T ss_pred CC-cCCcCC-HhHhCCCccCCEEECCCCC-CcccCch-------------hhhccCCCCcEEECCCCccccccCHHH---
Confidence 65 344331 2234556666666666653 3333210 012234555555555554444443221
Q ss_pred ceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEec
Q 046905 175 TFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYS 211 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~ 211 (225)
...+++|++|++.++. ++.+ |..+..+++|+++++.
T Consensus 170 ~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 170 FAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEE
T ss_pred ccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCC
Confidence 1234455555555542 2222 3333344444444443
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=1.1e-10 Score=100.65 Aligned_cols=201 Identities=16% Similarity=0.106 Sum_probs=122.2
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---cccccc---
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVS--- 76 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~--- 76 (225)
++++..+-.+.|. .+++|+.|+++++... .++...+..+++|++|+++...+..++... +... ..+...
T Consensus 84 ~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 84 ENNIQMIQADTFR--HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp SSCCCEECTTTTT--TCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred CCcCceECHHHcC--CCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 4445544444443 4788899999876543 334334567889999988333455554321 1111 111111
Q ss_pred cccc-ccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC---Cc-----cccccccc
Q 046905 77 KLAL-IKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS---DV-----AGANLEEE 147 (225)
Q Consensus 77 ~l~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~---~~-----~~~~~~~~ 147 (225)
.+++ .+..+++|+.|++.+|..+..+. ......+++|+.|++.++. +..++........ +. .+..+...
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 161 SIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred eeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCcccc
Confidence 1222 34567899999999998888763 3345678899999998875 5554321111000 01 11112344
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
..+++|+.|.+.++. ++.+.... ...+++|+.|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 239 ~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQ-VSLIERNA---FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCccCCCEEEeCCCc-CceECHHH---hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 567889999998863 44444322 245899999999998 78888765 36789999999986533
No 14
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.16 E-value=8.4e-12 Score=103.26 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=95.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccce--Eec----cCCccccccccc-c-----cccccccc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKE--IFS----NEGCLESHVGVS-K-----LALIKISF 85 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~--~~~----~~~~~~~~l~~~-~-----l~~~~~~l 85 (225)
..+++|++|+++++......+. .+..+++|++|++ +|..+.. ++. ........+... . ++.....+
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 3477888888887653333333 2456888888888 7755542 111 001111111111 1 22234567
Q ss_pred c-ccceEeccCcc-CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 86 G-NLTHLVVFSCK-KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 86 ~-~L~~L~i~~C~-~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
+ +|++|++++|. .+..-..+.....+++|++|++.+|..+..... .....+++|++|.+.+|..
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--------------~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--------------QEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--------------GGGGGCTTCCEEECTTCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH--------------HHHhCCCCCCEeeCCCCCC
Confidence 8 99999999997 455322245667899999999999975432211 2345679999999999985
Q ss_pred cceeecCCCccceeCCCccEEEEeCC
Q 046905 164 LTSFCSGVVDYTFKFPSLEDLIVTGC 189 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~~L~I~~C 189 (225)
+...... ....+++|++|++.+|
T Consensus 260 ~~~~~~~---~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLL---ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGG---GGGGCTTCCEEECTTS
T ss_pred CCHHHHH---HHhcCCCCCEEeccCc
Confidence 4332111 1235899999999999
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.15 E-value=2.6e-10 Score=90.80 Aligned_cols=163 Identities=16% Similarity=0.122 Sum_probs=114.8
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+..++++.|+++++.... ++...+..+++|++|+++-..+..++. .....+++|+.|+++
T Consensus 28 ~~p~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 28 SVPSGIPADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSA---------------GVFDDLTELGTLGLA 91 (251)
T ss_dssp SCCSCCCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCT---------------TTTTTCTTCCEEECT
T ss_pred ccCCCCCCCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCH---------------hHhccCCcCCEEECC
Confidence 4555566799999999866444 443346789999999993334554432 123458899999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|++|++.++. +..++. .....+++|+.|.+.++ +++.+..+.
T Consensus 92 ~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~--- 150 (251)
T 3m19_A 92 NN-QLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLPS--------------GVFDRLTKLKELRLNTN-QLQSIPAGA--- 150 (251)
T ss_dssp TS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCCCCCTTT---
T ss_pred CC-cccccC-hhHhcccCCCCEEEcCCCc-CCCcCh--------------hHhccCCcccEEECcCC-cCCccCHHH---
Confidence 88 466553 3455688999999999884 655542 12346789999999887 566665432
Q ss_pred ceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|+++++ +++.+|. .+..+++|+.+++.++.+
T Consensus 151 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 151 FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 235799999999997 6777765 456789999999986544
No 16
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.14 E-value=1.2e-10 Score=95.89 Aligned_cols=62 Identities=6% Similarity=0.015 Sum_probs=46.5
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCcee
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESACC 216 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~~ 216 (225)
.+++|++|.+.++ .++.+... ...+++|++|+++++ +++.+|.....+++|+.++++++.+.
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~----~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPE----FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGG----GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccCCEEECCCC-cCCcchhh----hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 4678888888776 34444432 245789999999998 77888887778899999999876553
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=5.6e-10 Score=91.03 Aligned_cols=177 Identities=17% Similarity=0.162 Sum_probs=110.7
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccc---cccc---ccccccccccccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLES---HVGV---SKLALIKISFGNL 88 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~---~l~~---~~l~~~~~~l~~L 88 (225)
.+|.+.+++++.|+++++... .++...+..+++|++|+++...+..++........ .+.. ..++.....+++|
T Consensus 24 ~ip~~~~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 102 (290)
T 1p9a_G 24 ALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102 (290)
T ss_dssp SCCSCCCTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTC
T ss_pred cCCCCCCCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCC
Confidence 356566679999999976543 34334467899999999944456666543221110 0111 1222333446667
Q ss_pred ceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceee
Q 046905 89 THLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+.|+++++ .++.+. +.....+++|+.|++.++. +..++. .....+++|+.|.+.+. +++.+.
T Consensus 103 ~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~l~ 164 (290)
T 1p9a_G 103 TVLDVSFN-RLTSLP-LGALRGLGELQELYLKGNE-LKTLPP--------------GLLTPTPKLEKLSLANN-NLTELP 164 (290)
T ss_dssp CEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTSC-CCCCCT--------------TTTTTCTTCCEEECTTS-CCSCCC
T ss_pred CEEECCCC-cCcccC-HHHHcCCCCCCEEECCCCC-CCccCh--------------hhcccccCCCEEECCCC-cCCccC
Confidence 77777666 344432 2334566677777776663 444331 12235788999998876 456665
Q ss_pred cCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
.+. ...+++|++|++.++ +++.+|.+....++|+.+.+.++.
T Consensus 165 ~~~---~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 AGL---LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred HHH---hcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 432 235889999999987 688899888778899999998543
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.12 E-value=1.3e-09 Score=90.00 Aligned_cols=126 Identities=7% Similarity=0.066 Sum_probs=65.8
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC--CCCCc-----cccccccccccccccee
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ--GDSDV-----AGANLEEEILFSKLRYM 156 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~--~~~~~-----~~~~~~~~~~~p~L~~L 156 (225)
.+++|+.|+++++.--..-..+.....+++|+.|++.++. +..++..... ...+. .+........+++|++|
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 4566666666665321110112334556667777766654 3333221100 00000 00111223455677777
Q ss_pred ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 157 TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 157 ~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.+.++. ++.+... ....+++|++|++++| +++.+|..+..+++|+++++.++.+
T Consensus 222 ~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 222 GLSFNS-ISAVDNG---SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp ECCSSC-CCEECTT---TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred ECCCCc-CceeChh---hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcC
Confidence 776653 3333322 1245778888888887 6677777777778888888875433
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.12 E-value=2.2e-10 Score=92.78 Aligned_cols=163 Identities=17% Similarity=0.102 Sum_probs=90.7
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccC--Cccc---ccccc---ccc-ccccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNE--GCLE---SHVGV---SKL-ALIKISFGNLT 89 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~--~~~~---~~l~~---~~l-~~~~~~l~~L~ 89 (225)
.+++|++|+++++......|. .+..+++|++|++ ++..+..+.... .... ..+.. ... +.....+++|+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 477888888887654333333 3567888888888 665455553211 1110 01111 111 12234567888
Q ss_pred eEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCc-----ccccccccccccccceeecC
Q 046905 90 HLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDV-----AGANLEEEILFSKLRYMTML 159 (225)
Q Consensus 90 ~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~-----~~~~~~~~~~~p~L~~L~l~ 159 (225)
+|++.++ .++.+. +.....+++|++|++.++. +..++...... . ... .+..+.....+++|+.|.+.
T Consensus 133 ~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 133 YLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp EEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCC-cccccC-HhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 8888877 344442 2334567888888888774 55444321110 0 001 11112334567899999998
Q ss_pred cCCCcceeecCCCccceeCCCccEEEEeCCC
Q 046905 160 DLENLTSFCSGVVDYTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 160 ~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~ 190 (225)
++ .++.+... ....+++|++|++.+++
T Consensus 210 ~n-~l~~~~~~---~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 210 AN-NLSALPTE---ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SS-CCSCCCHH---HHTTCTTCCEEECCSSC
T ss_pred CC-cCCcCCHH---HcccCcccCEEeccCCC
Confidence 87 34444321 12358999999998875
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.12 E-value=5.5e-10 Score=90.03 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=95.6
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---ccccc---ccccc-ccccccccceE
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGV---SKLAL-IKISFGNLTHL 91 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~---~~l~~-~~~~l~~L~~L 91 (225)
.+++|+.|.+.++. ...++. +..+++|++|++ ++ .+..+........ ..+.. ..+++ ....+++|++|
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~--l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQG--IQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTT--GGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCC-cccccc--cccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45666666666543 223332 455667777766 33 2333221111100 00000 01111 13346777777
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
++.+| .++.+. +.....+++|+.|++.+|. +..++. .....+++|+.|.+.++ +++.+....
T Consensus 115 ~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------------~~~~~l~~L~~L~l~~n-~l~~~~~~~ 176 (272)
T 3rfs_A 115 VLVEN-QLQSLP-DGVFDKLTNLTYLNLAHNQ-LQSLPK--------------GVFDKLTNLTELDLSYN-QLQSLPEGV 176 (272)
T ss_dssp ECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred ECCCC-cCCccC-HHHhccCCCCCEEECCCCc-cCccCH--------------HHhccCccCCEEECCCC-CcCccCHHH
Confidence 77777 344442 2334567777777777773 444331 12346788999999887 355544321
Q ss_pred CccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++++| +++.+|.. +..+++|+.+++.++.+
T Consensus 177 ---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 177 ---FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ---hcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence 235789999999998 56666654 46789999999986643
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.12 E-value=1.3e-09 Score=94.44 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=43.8
Q ss_pred cccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 147 EILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 147 ~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|.+.++ +++.+.... ...+++|++|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 268 ~~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 268 LHELLRLQEIQLVGG-QLAVVEPYA---FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CTTCTTCCEEECCSS-CCSEECTTT---BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ccccccCCEEECCCC-ccceECHHH---hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 345677777777765 344443321 245789999999998 67777754 36778999999986544
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.09 E-value=5.6e-10 Score=89.83 Aligned_cols=168 Identities=18% Similarity=0.133 Sum_probs=91.4
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---cccccc-cccccccceEe
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLALI-KISFGNLTHLV 92 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~~-~~~l~~L~~L~ 92 (225)
.+.+.+++++.. +..+|... .++|++|+++...+..++... .... ..+.. ..+++. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCC-CCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 467888887643 45566532 468999999434455554311 1000 00100 011111 12344555555
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV 172 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 172 (225)
++++ .++.+. +.....+++|++|++.++. +..++ ......+++|++|.+.++ .++.+....
T Consensus 92 l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~--------------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~- 152 (270)
T 2o6q_A 92 VTDN-KLQALP-IGVFDQLVNLAELRLDRNQ-LKSLP--------------PRVFDSLTKLTYLSLGYN-ELQSLPKGV- 152 (270)
T ss_dssp CCSS-CCCCCC-TTTTTTCSSCCEEECCSSC-CCCCC--------------TTTTTTCTTCCEEECCSS-CCCCCCTTT-
T ss_pred CCCC-cCCcCC-HhHcccccCCCEEECCCCc-cCeeC--------------HHHhCcCcCCCEEECCCC-cCCccCHhH-
Confidence 5544 233221 1223344555555555443 22221 122346788889888876 355554331
Q ss_pred ccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 173 DYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++.++ +++.+|.. +..+++|+.+++.++..
T Consensus 153 --~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 153 --FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp --TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence 245799999999998 66777654 56789999999986543
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.08 E-value=7.5e-10 Score=95.94 Aligned_cols=200 Identities=18% Similarity=0.147 Sum_probs=101.2
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---cccccc---
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVS--- 76 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~--- 76 (225)
++++..+-...|. .+++|++|+++++......|. .+..+++|++|+++-..+..++... +... ..+...
T Consensus 41 ~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 41 KNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp SSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred CCccceECHhHcc--CCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 3444444333333 377888888877654333333 3567788888888323344443211 1100 001110
Q ss_pred cc-ccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--CC---C-----ccccccc
Q 046905 77 KL-ALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--DS---D-----VAGANLE 145 (225)
Q Consensus 77 ~l-~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~~---~-----~~~~~~~ 145 (225)
.+ +.....+++|+.|++.++ .+..+. +.....+++|++|++.+|. +..++...... .. . .......
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDN-DLVYIS-HRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCT-TCCEEC-TTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred cCChhHccccccCCEEECCCC-ccceeC-hhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 01 112334555666666555 233322 2233445566666665553 33322110000 00 0 0000112
Q ss_pred ccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 146 EEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 146 ~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
....+++|++|.+.+++.+..+.... ...++|++|++.+| +++.+|. .+..+++|+.|+++++..
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNC----LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTT----TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred hcccCcccceeeCCCCccccccCccc----ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcC
Confidence 33456778888888887777766543 34558888888887 5666663 345778899998886544
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.08 E-value=5.6e-10 Score=93.16 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=95.0
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEecc--CCccc---ccccc---ccccc--ccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSN--EGCLE---SHVGV---SKLAL--IKISFGNLT 89 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~--~~~~~---~~l~~---~~l~~--~~~~l~~L~ 89 (225)
.+++|+.|+++++.... ++...+..+++|++|+++...+..++.. ..... -.+.. ..++. ....+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 36677777777654333 3323345677777777733344443321 11100 00110 11111 233466777
Q ss_pred eEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC-----Cccc-----ccccccccccccceeecC
Q 046905 90 HLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS-----DVAG-----ANLEEEILFSKLRYMTML 159 (225)
Q Consensus 90 ~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~-----~~~~-----~~~~~~~~~p~L~~L~l~ 159 (225)
.|+++++..+..+. +.....+++|++|++.++. +..+.......-. +.+. ........+++|+.|.+.
T Consensus 153 ~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 153 ILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp EEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred EEECCCCccccccC-HHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 77777665555442 2334556667777776664 3322111100000 0000 000011235666666665
Q ss_pred cCCCcceeecC-----------------C---C--------ccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEe
Q 046905 160 DLENLTSFCSG-----------------V---V--------DYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWY 210 (225)
Q Consensus 160 ~~~~L~~~~~~-----------------~---~--------~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i 210 (225)
++. ++.+... . . .....+++|++|+++++ +++.+|... ..+++|+++++
T Consensus 231 ~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 231 DTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp SCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 542 1111000 0 0 00124789999999998 788898875 68899999999
Q ss_pred cCCce
Q 046905 211 SESAC 215 (225)
Q Consensus 211 ~~~~~ 215 (225)
.++.+
T Consensus 309 ~~N~~ 313 (353)
T 2z80_A 309 HTNPW 313 (353)
T ss_dssp CSSCB
T ss_pred eCCCc
Confidence 86643
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=5.3e-10 Score=97.64 Aligned_cols=122 Identities=7% Similarity=0.000 Sum_probs=68.0
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC---CCC---Cccc--c-cccccccccccce
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ---GDS---DVAG--A-NLEEEILFSKLRY 155 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~---~~~---~~~~--~-~~~~~~~~p~L~~ 155 (225)
+++|+.|++.++ .+..+. +.....+++|+.|+++++. +..++..... ... +.++ . .......+++|+.
T Consensus 119 l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~ 195 (487)
T 3oja_A 119 GQGKKNIYLANN-KITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195 (487)
T ss_dssp CSSCEEEECCSS-CCCSGG-GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCE
T ss_pred cCCCCEEECCCC-CCCCCC-chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCE
Confidence 556666666665 233332 2233456666666666654 3332211100 000 0000 0 0012224677777
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
|.+.++ .++.++.. ...+++|+.|+++++ .+..+|..+..+++|+.+++.++.+
T Consensus 196 L~Ls~N-~l~~~~~~----~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 196 LDLSSN-KLAFMGPE----FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECCSS-CCCEECGG----GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred EECCCC-CCCCCCHh----HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 777765 34444432 245788999999886 6777888777888999999887654
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.06 E-value=1e-09 Score=88.47 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=102.3
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEecc--CCccc---ccccc---ccccc-ccccccccce
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSN--EGCLE---SHVGV---SKLAL-IKISFGNLTH 90 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~--~~~~~---~~l~~---~~l~~-~~~~l~~L~~ 90 (225)
.+++|+.|+++++.. ..++...+..+++|++|+++...+..++.. .+... ..+.. ..+.+ ....+++|+.
T Consensus 50 ~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 50 SFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred cccCCcEEECCCCcC-CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 478999999998654 344444467899999999933445555421 11110 00111 11111 2445677778
Q ss_pred EeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccc----eeecCcCCCcce
Q 046905 91 LVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLR----YMTMLDLENLTS 166 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~----~L~l~~~~~L~~ 166 (225)
|+++++ .++.+..+.....+++|++|+++++. +..++. .....+++|+ +|.+.+. .++.
T Consensus 129 L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~l~l~L~ls~n-~l~~ 191 (276)
T 2z62_A 129 LNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC--------------TDLRVLHQMPLLNLSLDLSLN-PMNF 191 (276)
T ss_dssp EECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECG--------------GGGHHHHTCTTCCEEEECCSS-CCCE
T ss_pred EECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCH--------------HHhhhhhhccccceeeecCCC-cccc
Confidence 877776 34433224455677778888887774 444321 1223344555 5666554 3444
Q ss_pred eecCCCccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEecCCc
Q 046905 167 FCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSESA 214 (225)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~~~ 214 (225)
+.... ...++|++|+++++ +++.+|... ..+++|+.+++.++.
T Consensus 192 ~~~~~----~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 192 IQPGA----FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECTTS----SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCccc----cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 54432 34568999999998 488887653 678999999998543
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.04 E-value=1.2e-09 Score=95.99 Aligned_cols=162 Identities=16% Similarity=0.092 Sum_probs=95.3
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+.+++|++|+++++......|. .+..+++|++|+++...+..++.. .+..+++|++|+++
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~---------------~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGD---------------AFYSLGSLEHLDLS 82 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTT---------------TTTTCTTCCEEECT
T ss_pred cccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChh---------------hccccccCCEEECC
Confidence 45666678999999998764443333 357899999999933356655431 23346778888887
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|++|+++++. +..+.. +.....+++|++|.+.++..+..+....
T Consensus 83 ~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-------------~~~~~~l~~L~~L~L~~n~~~~~~~~~~--- 143 (549)
T 2z81_A 83 DN-HLSSLS-SSWFGPLSSLKYLNLMGNP-YQTLGV-------------TSLFPNLTNLQTLRIGNVETFSEIRRID--- 143 (549)
T ss_dssp TS-CCCSCC-HHHHTTCTTCCEEECTTCC-CSSSCS-------------SCSCTTCTTCCEEEEEESSSCCEECTTT---
T ss_pred CC-ccCccC-HHHhccCCCCcEEECCCCc-ccccch-------------hhhhhccCCccEEECCCCccccccCHhh---
Confidence 77 344442 3445677788888887774 332210 0123356667777777666555554321
Q ss_pred ceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
...+++|++|++.++.--...|..+..+++|+.+++.
T Consensus 144 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred hhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 1346667777776664333344444444555555443
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.04 E-value=8e-10 Score=101.50 Aligned_cols=113 Identities=9% Similarity=-0.074 Sum_probs=70.3
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
...+++|+.|++.+|. +.... +.....+++|++|++.+|.-...++ .....+++|++|.+.++
T Consensus 438 l~~l~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---------------~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNM-LEGEI-PQELMYVKTLETLILDFNDLTGEIP---------------SGLSNCTNLNWISLSNN 500 (768)
T ss_dssp GGGCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCEEECCSSCCCSCCC---------------GGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCEEECCCCc-ccCcC-CHHHcCCCCceEEEecCCcccCcCC---------------HHHhcCCCCCEEEccCC
Confidence 3345666666666663 32221 3344566666666666664221221 23456778888888887
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.--..++.. ...+++|++|++++|.-...+|..+..+++|+.+++.++.+
T Consensus 501 ~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 501 RLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCCSCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ccCCcCChH----HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 644344432 24578888888888865557787777888888888876544
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.02 E-value=4.5e-10 Score=100.04 Aligned_cols=171 Identities=16% Similarity=0.088 Sum_probs=97.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc-cc-----ccccc----cccccccccc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE-SH-----VGVSK----LALIKISFGN 87 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~-~~-----l~~~~----l~~~~~~l~~ 87 (225)
..+++|+.|+++++.. ..+|. .+..+++|++|++ ++. +..++....... .. +.... .+.....+++
T Consensus 373 ~~~~~L~~L~L~~n~l-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGA-IIMSA-NFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HCCSCCCEEECCSCSE-EEECC-CCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccCCcccEeECCCCcc-ccchh-hccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 3577888888887653 33442 2466788888888 542 222211010000 00 00000 1122334566
Q ss_pred cceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCccee
Q 046905 88 LTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSF 167 (225)
Q Consensus 88 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~ 167 (225)
|+.|++.+|. +.....+.....+++|++|++++|. +..++. .....+++|++|.+.++. ++.+
T Consensus 450 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~Ls~N~-l~~~ 512 (606)
T 3vq2_A 450 LNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW--------------GVFDTLHRLQLLNMSHNN-LLFL 512 (606)
T ss_dssp CCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECT--------------TTTTTCTTCCEEECCSSC-CSCE
T ss_pred CCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccCh--------------hhhcccccCCEEECCCCc-CCCc
Confidence 6666666663 2221112334456666666666663 333221 234567899999999884 4444
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceecCCCCCCC-CeeEEEecCC
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITP-KRVDAWYSES 213 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~-~L~~l~i~~~ 213 (225)
... ....+++|++|++++| +++.+|..+..++ +|+++++.++
T Consensus 513 ~~~---~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 513 DSS---HYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EGG---GTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred CHH---HccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence 221 1245889999999998 5888998877776 5999999854
No 30
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.01 E-value=1.2e-09 Score=89.85 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=36.3
Q ss_pred ccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 150 FSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 150 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+++|++|.+.++. ++.++... +++|++|+++++ +++.+|. ...+++|+++++.++.+
T Consensus 252 l~~L~~L~Ls~N~-l~~ip~~~------~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-LKQVPKGL------PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CTTCCEEECTTSC-CSSCCSSC------CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred cCCCCEEECCCCc-cChhhhhc------cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 4677777776653 34444322 267778887776 5666665 56677788887766543
No 31
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.01 E-value=1.2e-09 Score=89.10 Aligned_cols=163 Identities=10% Similarity=0.086 Sum_probs=88.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccc---cccccccc--ccccccccccceEec
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLVV 93 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~i 93 (225)
..+++|+.|+++++.. ..++. +..+++|++|+++...+..++....... ..+....+ .+....+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i-~~~~~--~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCc-ccChh--HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 3466777777776542 33333 4567777777772223444332111100 00000000 122334566777777
Q ss_pred cCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCc
Q 046905 94 FSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVD 173 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~ 173 (225)
++| .++.+ .....+++|+.|++++|. +..+ .....+++|++|.+.++ .++.+..
T Consensus 120 ~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~----------------~~l~~l~~L~~L~L~~N-~l~~~~~---- 173 (291)
T 1h6t_A 120 EHN-GISDI---NGLVHLPQLESLYLGNNK-ITDI----------------TVLSRLTKLDTLSLEDN-QISDIVP---- 173 (291)
T ss_dssp TTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCC----------------GGGGGCTTCSEEECCSS-CCCCCGG----
T ss_pred CCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcc----------------hhhccCCCCCEEEccCC-ccccchh----
Confidence 666 34443 234566677777776664 3332 13345677888877766 3333322
Q ss_pred cceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 174 YTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
...+++|++|+++++ +++.+|. +..+++|+.+++.++
T Consensus 174 -l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE
T ss_pred -hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCC
Confidence 134778888888877 5666654 566778888887644
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.01 E-value=2.4e-09 Score=88.54 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=26.7
Q ss_pred eeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 176 FKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
..+++|++|++.++ +++.+|..+..+++|+.+++.++.
T Consensus 238 ~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 35677888887776 566777766677777777777543
No 33
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.01 E-value=1.5e-09 Score=89.09 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=38.9
Q ss_pred cccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 147 EILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 147 ~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|.+.++. ++.+.. ...+++|++|++++| +++.++. +..+++|+.+++.++.+
T Consensus 169 l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 169 LANLSKLTTLKADDNK-ISDISP-----LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred hcCCCCCCEEECCCCc-cCcChh-----hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCee
Confidence 3455667777766652 232221 235788899998887 5666653 56788899888875433
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.00 E-value=2e-09 Score=86.78 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=96.6
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccce
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTH 90 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~ 90 (225)
|...|.++..+.+.+........ ...+++|++|++ ++ .+..+........ ..+....+ .+....+++|++
T Consensus 14 ~~~~~~~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 89 (272)
T 3rfs_A 14 PDDAFAETIKANLKKKSVTDAVT---QNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTY 89 (272)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCE
T ss_pred CCchHHHHHHHHhcCcccccccc---cccccceeeeeeCCC-CcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCE
Confidence 44456666666665543333322 467999999999 54 3444432211110 00110000 122334555666
Q ss_pred EeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecC
Q 046905 91 LVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSG 170 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~ 170 (225)
|++++| .++.+. +.....+++|++|++.+|. +..++. .....+++|++|.+.++ +++.+...
T Consensus 90 L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~ 151 (272)
T 3rfs_A 90 LILTGN-QLQSLP-NGVFDKLTNLKELVLVENQ-LQSLPD--------------GVFDKLTNLTYLNLAHN-QLQSLPKG 151 (272)
T ss_dssp EECTTS-CCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred EECCCC-ccCccC-hhHhcCCcCCCEEECCCCc-CCccCH--------------HHhccCCCCCEEECCCC-ccCccCHH
Confidence 666555 333331 2223455566666665553 332221 12346788999999887 56555543
Q ss_pred CCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 171 VVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 171 ~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
. ...+++|++|++.+| +++.+|.. +..+++|+.+++.++..
T Consensus 152 ~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 152 V---FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp T---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred H---hccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcC
Confidence 1 235889999999998 57777654 36789999999986544
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.3e-09 Score=101.20 Aligned_cols=176 Identities=12% Similarity=0.057 Sum_probs=96.8
Q ss_pred ccc--ccccCccEEEEeeCCccc-----------------cCCHhH-HHhccCCcEEEE-eccccceEeccCCccccccc
Q 046905 16 FPR--HLFGRLRRLEVVRDDVAT-----------------GFPVGL-LEVLHSLETLHL-SCTSYKEIFSNEGCLESHVG 74 (225)
Q Consensus 16 ~~~--~~l~~L~~L~l~~~~~~~-----------------~~p~~~-~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~ 74 (225)
+|. +.+++|+.|+++++.... .+|..+ +.++++|++|++ +|.-...++.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~---------- 509 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD---------- 509 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG----------
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH----------
Confidence 554 468899999999866444 266652 228999999999 7765544442
Q ss_pred ccccccccccccccceEeccCccCccc-cCCchHHhhcc-------cCCEEEEecCcccccccc--cccC-CCC---Ccc
Q 046905 75 VSKLALIKISFGNLTHLVVFSCKKLMN-LVPSSVAKSLE-------RLVTLRVSGCSAMTQVVA--SCDQ-GDS---DVA 140 (225)
Q Consensus 75 ~~~l~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~-------~L~~L~I~~C~~L~~l~~--~~~~-~~~---~~~ 140 (225)
....+++|+.|+++++..+.. .. |.....++ +|+.|++.++. +..++. .-.. ... ..+
T Consensus 510 ------~l~~L~~L~~L~Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 510 ------FLYDLPELQSLNIACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp ------GGGGCSSCCEEECTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECT
T ss_pred ------HHhCCCCCCEEECcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECC
Confidence 122345555555555533332 11 22222222 55555555543 333332 0000 000 000
Q ss_pred c--c-cccccccccccceeecCcCCCcceeecCCCccceeCCC-ccEEEEeCCCCCceecCCCCCC--CCeeEEEecCCc
Q 046905 141 G--A-NLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS-LEDLIVTGCCNMKIFTSGDLIT--PKRVDAWYSESA 214 (225)
Q Consensus 141 ~--~-~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~-L~~L~I~~C~~L~~lp~~~~~~--~~L~~l~i~~~~ 214 (225)
. . .-.....+++|+.|.+.++. ++.++.. ...+++ |++|+++++. ++.+|..+... ++|+.++++.+.
T Consensus 582 ~N~l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~----l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 582 HNKVRHLEAFGTNVKLTDLKLDYNQ-IEEIPED----FCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp TSCCCBCCCCCTTSEESEEECCSSC-CSCCCTT----SCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCcccchhhcCCCcceEEECcCCc-cccchHH----HhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence 0 0 00123456778888887764 3344432 246788 9999999985 77888765444 459999998665
Q ss_pred e
Q 046905 215 C 215 (225)
Q Consensus 215 ~ 215 (225)
.
T Consensus 656 l 656 (876)
T 4ecn_A 656 I 656 (876)
T ss_dssp T
T ss_pred C
Confidence 4
No 36
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.99 E-value=1.2e-09 Score=91.16 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=110.0
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccC--Cccc-cc---ccc---ccccc-ccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNE--GCLE-SH---VGV---SKLAL-IKI 83 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~--~~~~-~~---l~~---~~l~~-~~~ 83 (225)
.+|.+.++++++|+++++. +..+|...+.++++|++|++ ++.-.+.++... +... .. +.. ..+++ .+.
T Consensus 23 ~iP~~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 23 EIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp SCCTTCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred ccCcCcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 3566666799999999754 56677665678999999999 665555554321 1111 00 000 12222 244
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC---C---Cccc--cc--cccccccccc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD---S---DVAG--AN--LEEEILFSKL 153 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~---~---~~~~--~~--~~~~~~~p~L 153 (225)
.+++|++|++.++ +++.+. ........++..|.+.++.++..++....... . ..+. .. .......++|
T Consensus 102 ~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 102 NLPNLQYLLISNT-GIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCTTCCEEEEEEE-CCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hcccccccccccc-ccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 5778888888877 344442 22233456677788877777766653321110 0 0000 00 1112234678
Q ss_pred ceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 154 RYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 154 ~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
+.|.+.++..++.++.+. ...+++|++|+++++ +++.+|.. .+..|+.+++.
T Consensus 180 ~~l~l~~~n~l~~i~~~~---f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l 231 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDV---FHGASGPVILDISRT-RIHSLPSY--GLENLKKLRAR 231 (350)
T ss_dssp EEEECTTCTTCCCCCTTT---TTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECT
T ss_pred hHHhhccCCcccCCCHHH---hccCcccchhhcCCC-CcCccChh--hhccchHhhhc
Confidence 888888888888777542 245788888888887 68888764 24556666554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.99 E-value=3.9e-09 Score=89.14 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=17.8
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
+++|++|+++++.. ..++...+..+++|++|++
T Consensus 68 l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L 100 (390)
T 3o6n_A 68 FRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYM 100 (390)
T ss_dssp CCCCSEEECTTSCC-CEECTTTTTTCTTCCEEEC
T ss_pred cccCcEEECCCCcc-cccChhhccCCCCcCEEEC
Confidence 55666666665442 2233222455666666666
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.99 E-value=1.1e-09 Score=98.58 Aligned_cols=174 Identities=10% Similarity=0.062 Sum_probs=103.2
Q ss_pred ccc--ccccCccEEEEeeCCcccc-----------------CCHhHHH--hccCCcEEEE-eccccceEeccCCcccccc
Q 046905 16 FPR--HLFGRLRRLEVVRDDVATG-----------------FPVGLLE--VLHSLETLHL-SCTSYKEIFSNEGCLESHV 73 (225)
Q Consensus 16 ~~~--~~l~~L~~L~l~~~~~~~~-----------------~p~~~~~--~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l 73 (225)
+|. +.+++|++|+++++..... +|.. ++ ++++|++|++ +|.-...++.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~--------- 267 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPT--------- 267 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCT---------
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChH---------
Confidence 454 4688999999998764442 6665 45 8999999999 7765544442
Q ss_pred cccccccccccccccceEeccCccCccc-cCCchHHhhc------ccCCEEEEecCcccccccc--cccC-CCC---Ccc
Q 046905 74 GVSKLALIKISFGNLTHLVVFSCKKLMN-LVPSSVAKSL------ERLVTLRVSGCSAMTQVVA--SCDQ-GDS---DVA 140 (225)
Q Consensus 74 ~~~~l~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l------~~L~~L~I~~C~~L~~l~~--~~~~-~~~---~~~ 140 (225)
....+++|+.|+++++..++. .. |.....+ ++|++|++.+|. +..++. .-.. ... +.+
T Consensus 268 -------~l~~l~~L~~L~Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 268 -------FLKALPEMQLINVACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp -------TTTTCSSCCEEECTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECC
T ss_pred -------HHhcCCCCCEEECcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCc
Confidence 223356666666666643443 11 2333333 666666666654 334432 1000 000 000
Q ss_pred c-----ccccccccccccceeecCcCCCcceeecCCCccceeCCC-ccEEEEeCCCCCceecCCCCC--CCCeeEEEecC
Q 046905 141 G-----ANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS-LEDLIVTGCCNMKIFTSGDLI--TPKRVDAWYSE 212 (225)
Q Consensus 141 ~-----~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~-L~~L~I~~C~~L~~lp~~~~~--~~~L~~l~i~~ 212 (225)
. .-+ ....+++|+.|.+.++. ++.++.. ...+++ |++|+++++. ++.+|..... +++|+.+++..
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~----l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPAN----FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSE-EEECCTT----SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCc-cccccHh----hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence 0 001 23456778888887763 4444433 256788 9999999985 6688876544 45899999986
Q ss_pred Cce
Q 046905 213 SAC 215 (225)
Q Consensus 213 ~~~ 215 (225)
+..
T Consensus 412 N~l 414 (636)
T 4eco_A 412 NEI 414 (636)
T ss_dssp SCT
T ss_pred CcC
Confidence 654
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.98 E-value=1.7e-09 Score=89.76 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=85.9
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccceEe
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLV 92 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~ 92 (225)
..+++|++|.+.++.. ..++. +..+++|++|++ +| .+..++....... -.+....+ .+....+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i-~~~~~--~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKV-ASIQG--IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCC-CCCTT--GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCcc-ccchh--hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence 3577888888887543 33443 567888888888 55 4544433111100 00000000 01223345555555
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV 172 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 172 (225)
+++|. +..+. ....+++|+.|++.+|..+..+ .....+++|++|.+.++.- +.+..
T Consensus 117 l~~n~-i~~~~---~~~~l~~L~~L~l~~n~~~~~~----------------~~~~~l~~L~~L~l~~~~~-~~~~~--- 172 (347)
T 4fmz_A 117 LNEDN-ISDIS---PLANLTKMYSLNLGANHNLSDL----------------SPLSNMTGLNYLTVTESKV-KDVTP--- 172 (347)
T ss_dssp CTTSC-CCCCG---GGTTCTTCCEEECTTCTTCCCC----------------GGGTTCTTCCEEECCSSCC-CCCGG---
T ss_pred CcCCc-ccCch---hhccCCceeEEECCCCCCcccc----------------cchhhCCCCcEEEecCCCc-CCchh---
Confidence 55542 33221 1344555555555555433322 1234566777777766632 22221
Q ss_pred ccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 173 DYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
...+++|++|++.+| .++.++. ...+++|+.+.+.++.
T Consensus 173 --~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp --GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC
T ss_pred --hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCC
Confidence 235788888888887 4555554 4567888888887543
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.98 E-value=2.6e-09 Score=87.23 Aligned_cols=192 Identities=18% Similarity=0.140 Sum_probs=97.2
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEe---cc-CCc---ccccccc---cccccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIF---SN-EGC---LESHVGV---SKLALIKISF 85 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~---~~-~~~---~~~~l~~---~~l~~~~~~l 85 (225)
+|.+.+++|++|+++++. +..+|...+..+++|++|+++...+..+. .. .+. ....+.. ..++.....+
T Consensus 22 ip~~~~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 22 VPTGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp CCSCCCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCCCCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 455556688888887654 34556554567788888888223343331 10 000 0000111 1112223345
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCccc------ccccccccccccc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVAG------ANLEEEILFSKLR 154 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~~------~~~~~~~~~p~L~ 154 (225)
++|++|+++++ .++.+........+++|+.|++.++. +..++...... . ...++ ..+.....+++|+
T Consensus 101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 66666666665 23333221234556666666666654 22221110000 0 00000 0112334567788
Q ss_pred eeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 155 YMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 155 ~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
+|.+.++ .++.+.... ...+++|++|++.++ +++.++. .+..+++|+.+++.++..
T Consensus 179 ~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 179 FLDLSQC-QLEQLSPTA---FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp EEECTTS-CCCEECTTT---TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred EEECCCC-CcCCcCHHH---hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCC
Confidence 8888776 344443221 235788888888887 4555554 345678888888886544
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.97 E-value=5.4e-09 Score=93.04 Aligned_cols=187 Identities=12% Similarity=0.023 Sum_probs=81.7
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEecc--CCccc---ccccccc---c---ccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSN--EGCLE---SHVGVSK---L---ALIKISFGN 87 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~--~~~~~---~~l~~~~---l---~~~~~~l~~ 87 (225)
.+++|++|+++++......|. .+..+++|++|++ ++.....++.. ..... -.+.... . +.....+++
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred ccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 467788888876554333332 2466777777777 55322222211 00000 0011000 0 112334566
Q ss_pred cceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC------CCcc-----ccccccccccccccee
Q 046905 88 LTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD------SDVA-----GANLEEEILFSKLRYM 156 (225)
Q Consensus 88 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~------~~~~-----~~~~~~~~~~p~L~~L 156 (225)
|+.|+++++. +.... +.....+++|++|++.++. +........... .+.+ ...+.....+++|++|
T Consensus 378 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 378 LQSLNLSYNE-PLSLK-TEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CCEEECCSCS-CEEEC-TTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCEEECCCCc-CCcCC-HHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 6666666653 33221 2333455666666665554 221111000000 0000 0011223345666666
Q ss_pred ecCcCCCcce-eecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 157 TMLDLENLTS-FCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 157 ~l~~~~~L~~-~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
.+.+++--.. +.... ....+++|++|++++| +++.+ |..+..+++|+.++++++
T Consensus 455 ~L~~n~l~~~~~~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTN--SLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCBCGGGEECSSC--GGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCCCccccccch--hhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC
Confidence 6666532211 11100 1234566666666666 33433 344455666666666654
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.96 E-value=3.5e-09 Score=87.12 Aligned_cols=125 Identities=10% Similarity=-0.041 Sum_probs=63.9
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccc-cccccccCC--C---CCccc-----ccccccccc
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMT-QVVASCDQG--D---SDVAG-----ANLEEEILF 150 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~-~l~~~~~~~--~---~~~~~-----~~~~~~~~~ 150 (225)
...+++|++|+++++. +.... +.....+++|++|++.++. +. .++..-... . ...+. ..+.....+
T Consensus 121 ~~~l~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA-LSGTL-PPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGGCTTCCEEECCSSE-EESCC-CGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred HhCCCCCCEEeCCCCc-cCCcC-ChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 3456677777777663 33221 3445567777777777665 32 222111000 0 00000 001112222
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+ |+.|.+.++. ++..... ....+++|++|++.++. +...+.....+++|+++++.++..
T Consensus 198 ~-L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 198 N-LAFVDLSRNM-LEGDASV---LFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp C-CSEEECCSSE-EEECCGG---GCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCC
T ss_pred c-ccEEECcCCc-ccCcCCH---HHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcc
Confidence 3 6777776652 2211111 12357889999998874 443333356778999999986654
No 43
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.96 E-value=2.1e-09 Score=88.30 Aligned_cols=164 Identities=12% Similarity=0.148 Sum_probs=92.8
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccceEe
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLV 92 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~ 92 (225)
..+++|+.|++.++.. ..++. +..+++|++|++ +| .+..++....... ..+....+ .+....+++|+.|+
T Consensus 38 ~~l~~L~~L~l~~~~i-~~l~~--~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGV-TTIEG--VQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCc-cCchh--hhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 3477888888877543 33443 567888888888 44 4444433111100 00000000 01233355566666
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV 172 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 172 (225)
+++|. ++.+ + ....+++|++|++.+|. +..++ ....+++|++|.+.++ .++.+..
T Consensus 114 l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~----------------~l~~l~~L~~L~l~~n-~l~~~~~--- 168 (308)
T 1h6u_A 114 LTSTQ-ITDV--T-PLAGLSNLQVLYLDLNQ-ITNIS----------------PLAGLTNLQYLSIGNA-QVSDLTP--- 168 (308)
T ss_dssp CTTSC-CCCC--G-GGTTCTTCCEEECCSSC-CCCCG----------------GGGGCTTCCEEECCSS-CCCCCGG---
T ss_pred CCCCC-CCCc--h-hhcCCCCCCEEECCCCc-cCcCc----------------cccCCCCccEEEccCC-cCCCChh---
Confidence 66552 3333 1 24455666666665553 32221 2446788888888876 3444332
Q ss_pred ccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 173 DYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++.++ +++.++. ...+++|+.++++++..
T Consensus 169 --l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 169 --LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp --GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred --hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCcc
Confidence 135789999999987 5666664 56788999999987654
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.96 E-value=1.2e-09 Score=89.32 Aligned_cols=173 Identities=16% Similarity=0.055 Sum_probs=95.4
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc-cc-----ccccc---c-cccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE-SH-----VGVSK---L-ALIKISFGNL 88 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~-~~-----l~~~~---l-~~~~~~l~~L 88 (225)
.+++|++|+++++... .+|.. +..+++|++|++ ++ .+..++....... .+ +.... . +.....+++|
T Consensus 76 ~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp SCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred cccccCEEECCCCccc-cChhh-cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 3678999999876533 34433 456888888888 43 3333322111000 00 00000 0 1112335566
Q ss_pred ceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceee
Q 046905 89 THLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+.|++.++. +.....+.....+++|+.|++++|. +..++ ......+++|++|.+.++. ++.+.
T Consensus 153 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--------------~~~~~~l~~L~~L~L~~N~-l~~~~ 215 (306)
T 2z66_A 153 EVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLS--------------PTAFNSLSSLQVLNMSHNN-FFSLD 215 (306)
T ss_dssp CEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEEC--------------TTTTTTCTTCCEEECTTSC-CSBCC
T ss_pred CEEECCCCc-cccccchhHHhhCcCCCEEECCCCC-cCCcC--------------HHHhcCCCCCCEEECCCCc-cCccC
Confidence 666666653 2220012334456666666666653 33322 1234467899999998874 33333
Q ss_pred cCCCccceeCCCccEEEEeCCCCCceecCCCCCCC-CeeEEEecCCce
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITP-KRVDAWYSESAC 215 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~-~L~~l~i~~~~~ 215 (225)
.. ....+++|++|+++++.--...|.....++ +|+++++.++.+
T Consensus 216 ~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 216 TF---PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SG---GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred hh---hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 21 123579999999999954444455556664 899999986544
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.96 E-value=3.6e-09 Score=87.81 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=113.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccceEe
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLV 92 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~ 92 (225)
..+++|++|+++++.. ..++. +..+++|++|++ +| .+..++....... -.+....+ .+....+++|+.|+
T Consensus 63 ~~~~~L~~L~l~~n~i-~~~~~--~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQI-TDISP--LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLN 138 (347)
T ss_dssp GGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred hhcCCccEEEccCCcc-ccchh--hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEE
Confidence 4588999999998653 34444 578999999999 55 5555533222211 11111111 12255689999999
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV 172 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 172 (225)
+.+|..+..+ .....+++|+.|++.+|. +..++ ....+++|++|.+.++. ++.+..
T Consensus 139 l~~n~~~~~~---~~~~~l~~L~~L~l~~~~-~~~~~----------------~~~~l~~L~~L~l~~n~-l~~~~~--- 194 (347)
T 4fmz_A 139 LGANHNLSDL---SPLSNMTGLNYLTVTESK-VKDVT----------------PIANLTDLYSLSLNYNQ-IEDISP--- 194 (347)
T ss_dssp CTTCTTCCCC---GGGTTCTTCCEEECCSSC-CCCCG----------------GGGGCTTCSEEECTTSC-CCCCGG---
T ss_pred CCCCCCcccc---cchhhCCCCcEEEecCCC-cCCch----------------hhccCCCCCEEEccCCc-cccccc---
Confidence 9999877765 236789999999999986 43332 24578899999998874 333332
Q ss_pred ccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 173 DYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|.+.++ ++..++. ...+++|+++++.++..
T Consensus 195 --~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 195 --LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp --GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred --ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCCcc
Confidence 246899999999998 5555544 56789999999987644
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=2.5e-09 Score=95.47 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=19.9
Q ss_pred eCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 177 KFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 177 ~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.+++|++|++++|+ +..+| ...+++|+.|++.++.|
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred cCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 35556666665553 34343 34556677777765544
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=4.6e-09 Score=93.79 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=44.2
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---cccccc-cccccccceE
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLALI-KISFGNLTHL 91 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~~-~~~l~~L~~L 91 (225)
+++|+.|+++++... .++...+..+++|++|+++...+..++... +... ..+.. ..+++. +..+++|+.|
T Consensus 74 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 566777777664432 233222456666676666222344433211 1110 00111 111222 2345666666
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
+++++ .+..+. +.....+++|+.|++.++
T Consensus 153 ~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 153 SMSNN-NLERIE-DDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp ECCSS-CCCBCC-TTTTTTCTTCCEEECTTS
T ss_pred EeeCC-cCCCCC-hhhhhcCCcCcEEECcCC
Confidence 66665 333332 223445566666666554
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.94 E-value=5.6e-09 Score=93.50 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=60.7
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
..+++|+.|++++|. +..+ ..+..+++|+.|++++|. +..+ .....+++|+.|.|.++.
T Consensus 106 ~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~l----------------~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITDI----------------TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TTCTTCCEEECTTSC-CCCC---GGGGGCTTCSEEECCSSC-CCCC----------------GGGGSCTTCSEEECCSSC
T ss_pred ccCCCCCEEEecCCC-CCCC---ccccCCCccCEEECCCCc-cCCc----------------hhhcccCCCCEEECcCCc
Confidence 346777777777763 4443 235567777777777764 3332 123456677777776662
Q ss_pred CcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 163 NLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 163 ~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
+..+.. ...+++|+.|++++| .+..+|. +..+++|+.|++.++.
T Consensus 165 -l~~~~~-----l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 165 -ISDIVP-----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp -CCCCGG-----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCSEE
T ss_pred -CCCchh-----hccCCCCCEEECcCC-CCCCChH-HccCCCCCEEEccCCc
Confidence 222221 134677777777776 5555543 4566777777776543
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.94 E-value=1.5e-09 Score=99.75 Aligned_cols=125 Identities=10% Similarity=-0.052 Sum_probs=68.8
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC-CC---CC-----cccccccccccccccce
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-GD---SD-----VAGANLEEEILFSKLRY 155 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-~~---~~-----~~~~~~~~~~~~p~L~~ 155 (225)
+++|+.|++.+|. +.... +.....+++|+.|++.+|.--..++..-.. .. .. ..+..+.....+++|+.
T Consensus 393 ~~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNG-FTGKI-PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSE-EEEEC-CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCc-ccccc-CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 4556666666663 22221 344556667777777666421111110000 00 00 00011123445677777
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
|.+.++.--..++. ....+++|++|++.+|.--..+|..+..+++|+.+++.++..
T Consensus 471 L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 471 LILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 77777643333332 124578899999999865557787777888999999887654
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.94 E-value=7.3e-09 Score=87.45 Aligned_cols=181 Identities=12% Similarity=0.039 Sum_probs=92.7
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEecc--CCccc--------------cccc-----ccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSN--EGCLE--------------SHVG-----VSK 77 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~--~~~~~--------------~~l~-----~~~ 77 (225)
.+++|++|+++++.... ++...+..+++|++|++ ++ .+..+... ..... ..++ ...
T Consensus 139 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp TCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC
T ss_pred CCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCCe
Confidence 37788888888765433 33333567888888888 43 33332100 00000 0000 000
Q ss_pred cc-cccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCccc--c--ccccc
Q 046905 78 LA-LIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVAG--A--NLEEE 147 (225)
Q Consensus 78 l~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~~--~--~~~~~ 147 (225)
+. .....+++|+.|++.++ .++.. .....+++|++|+++++. +..++...... . ...++ . .+...
T Consensus 217 l~~~~~~~~~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (390)
T 3o6n_A 217 INVVRGPVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG 291 (390)
T ss_dssp CCEEECCCCSSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSS
T ss_pred eeeccccccccccEEECCCC-CCccc---HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCccc
Confidence 00 00112356666666666 23332 244566667777776664 33332111000 0 00000 0 00122
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
..+|+|++|.+.++ .++.++.. ...+++|++|++.+++ ++.+| ...+++|+.+++.++.+
T Consensus 292 ~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 292 QPIPTLKVLDLSHN-HLLHVERN----QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCCCCCEEECCCC-cceecCcc----ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 35677888887777 44444432 2457888888888874 56565 45678899999887655
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.93 E-value=8.3e-09 Score=92.87 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=92.8
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
.+|+.|+++++.. ..+|......+++|++|+++...+..++...... ..+....+++|+.|+++++ .++.
T Consensus 433 ~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~--------~~~~~~~l~~L~~L~Ls~N-~l~~ 502 (636)
T 4eco_A 433 INVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD--------ENENFKNTYLLTSIDLRFN-KLTK 502 (636)
T ss_dssp CCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE--------TTEECTTGGGCCEEECCSS-CCCB
T ss_pred CCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc--------ccccccccCCccEEECcCC-cCCc
Confidence 3666666665443 2455554455666777666222344333211000 0000112348888888887 4554
Q ss_pred cCCchHHh--hcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC------cceeecCCCc
Q 046905 102 LVPSSVAK--SLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN------LTSFCSGVVD 173 (225)
Q Consensus 102 l~~~~~~~--~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~------L~~~~~~~~~ 173 (225)
+ +.... .+++|+.|+++++. +..++ .....+++|+.|.++++.. ...++..
T Consensus 503 l--p~~~~~~~l~~L~~L~Ls~N~-l~~ip---------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~--- 561 (636)
T 4eco_A 503 L--SDDFRATTLPYLVGIDLSYNS-FSKFP---------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG--- 561 (636)
T ss_dssp C--CGGGSTTTCTTCCEEECCSSC-CSSCC---------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT---
T ss_pred c--ChhhhhccCCCcCEEECCCCC-CCCcC---------------hhhhcCCCCCEEECCCCcccccCcccccChHH---
Confidence 4 34444 78888888888875 44443 2344678888888865432 2223222
Q ss_pred cceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 174 YTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++++|. ++.+|.... ++|+.++++++.+
T Consensus 562 -l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 562 -ITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp -GGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTT
T ss_pred -HhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCC
Confidence 2457888888888874 477887543 7888888886643
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.93 E-value=3.9e-09 Score=93.09 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=45.4
Q ss_pred ccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCc
Q 046905 146 EEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESA 214 (225)
Q Consensus 146 ~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~ 214 (225)
....+++|+.|.+.++. ++.+.... ...+++|++|++++| +++.+|. .+..+++|+.+++.++.
T Consensus 465 ~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQ-LEQLSPTA---FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhcccCCCEEECCCCc-cccCChhh---hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 34467888888888874 44443221 245889999999998 6676664 35778999999998653
No 53
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.93 E-value=3.7e-09 Score=83.09 Aligned_cols=136 Identities=19% Similarity=0.153 Sum_probs=67.2
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
+|.+..++|+.|+++++......|. .+..+++|++|+++-..+..++.. .+..+++|+.|++++
T Consensus 34 ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~---------------~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 34 VPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVG---------------VFDSLTQLTVLDLGT 97 (229)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCS
T ss_pred cCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChh---------------hcccCCCcCEEECCC
Confidence 4444456666666666443332232 245566666666622234333221 122356666666666
Q ss_pred ccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccc
Q 046905 96 CKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYT 175 (225)
Q Consensus 96 C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~ 175 (225)
+ .++.+. +.....+++|+.|++.++. +..++ .....+++|+.|.+.+. +++.+.... .
T Consensus 98 N-~l~~l~-~~~~~~l~~L~~L~Ls~N~-l~~lp---------------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~ 155 (229)
T 3e6j_A 98 N-QLTVLP-SAVFDRLVHLKELFMCCNK-LTELP---------------RGIERLTHLTHLALDQN-QLKSIPHGA---F 155 (229)
T ss_dssp S-CCCCCC-TTTTTTCTTCCEEECCSSC-CCSCC---------------TTGGGCTTCSEEECCSS-CCCCCCTTT---T
T ss_pred C-cCCccC-hhHhCcchhhCeEeccCCc-ccccC---------------cccccCCCCCEEECCCC-cCCccCHHH---H
Confidence 5 444432 2233456666666666553 44433 12334566666666554 344443221 2
Q ss_pred eeCCCccEEEEeCC
Q 046905 176 FKFPSLEDLIVTGC 189 (225)
Q Consensus 176 ~~~p~L~~L~I~~C 189 (225)
..+++|+.|.+.+.
T Consensus 156 ~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 156 DRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCTTCCEEECTTS
T ss_pred hCCCCCCEEEeeCC
Confidence 23566666666553
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=93.97 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=46.6
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
++|+.|.+.++ +++.++... ..+++|++|++++| +++.+|.. +..+++|+++++.++.+
T Consensus 421 ~~L~~L~Ls~N-~l~~ip~~~----~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 421 PRIKVLDLHSN-KIKSIPKQV----VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTCCEEECCSS-CCCCCCGGG----GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCEEECCCC-cccccchhh----hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 68899998887 555555432 47899999999998 78889876 67889999999986543
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.92 E-value=6.2e-09 Score=89.43 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=24.6
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
...+++|+.|+++++. +....+......+++|++|++.++.
T Consensus 125 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred ccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc
Confidence 3346677777777663 4444322335567777777777764
No 56
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.92 E-value=9.1e-09 Score=78.84 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=91.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|++|+++++. ...++. +..+++|++|++ ++ .+..... .....+++|+.|++++|.
T Consensus 63 ~~l~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~---------------~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 63 EYAHNIKDLTINNIH-ATNYNP--ISGLSNLERLRIMGK-DVTSDKI---------------PNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp GGCTTCSEEEEESCC-CSCCGG--GTTCTTCCEEEEECT-TCBGGGS---------------CCCTTCTTCCEEECCSSB
T ss_pred hcCCCCCEEEccCCC-CCcchh--hhcCCCCCEEEeECC-ccCcccC---------------hhhcCCCCCCEEEecCCc
Confidence 468899999999873 344432 678999999999 54 3332111 223458999999999984
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
+.... +.....+++|++|++++|..+..++ ....+++|++|.+.++. ++.+. . ...
T Consensus 124 -i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~----------------~l~~l~~L~~L~l~~n~-i~~~~-~----l~~ 179 (197)
T 4ezg_A 124 -HDDSI-LTKINTLPKVNSIDLSYNGAITDIM----------------PLKTLPELKSLNIQFDG-VHDYR-G----IED 179 (197)
T ss_dssp -CBGGG-HHHHTTCSSCCEEECCSCTBCCCCG----------------GGGGCSSCCEEECTTBC-CCCCT-T----GGG
T ss_pred -cCcHh-HHHHhhCCCCCEEEccCCCCccccH----------------hhcCCCCCCEEECCCCC-CcChH-H----hcc
Confidence 44422 4566789999999999997565543 34568899999998874 44433 1 246
Q ss_pred CCCccEEEEeCCC
Q 046905 178 FPSLEDLIVTGCC 190 (225)
Q Consensus 178 ~p~L~~L~I~~C~ 190 (225)
+++|++|++.+.+
T Consensus 180 l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 180 FPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEEECBC-
T ss_pred CCCCCEEEeeCcc
Confidence 8999999998753
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.91 E-value=4.3e-09 Score=86.56 Aligned_cols=170 Identities=13% Similarity=0.035 Sum_probs=97.9
Q ss_pred cCccEEEEeeCCccc--cCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 22 GRLRRLEVVRDDVAT--GFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
.+++.|+++++.... .+|.. +..+++|++|++ ++..+....+ .....+++|++|+++++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p---------------~~l~~l~~L~~L~Ls~n~- 112 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIP---------------PAIAKLTQLHYLYITHTN- 112 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCC---------------GGGGGCTTCSEEEEEEEC-
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCC---------------hhHhcCCCCCEEECcCCe-
Confidence 589999999876555 56765 678999999999 6776653321 234468999999999984
Q ss_pred ccccCCchHHhhcccCCEEEEecCcccc-cccccccC-CC---CCc-----cccccccccccc-ccceeecCcCCCccee
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSAMT-QVVASCDQ-GD---SDV-----AGANLEEEILFS-KLRYMTMLDLENLTSF 167 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~L~-~l~~~~~~-~~---~~~-----~~~~~~~~~~~p-~L~~L~l~~~~~L~~~ 167 (225)
+.... +.....+++|++|+++++. +. .++..-.. .. ... .+..+.....++ +|++|.+.++.--..+
T Consensus 113 l~~~~-p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 113 VSGAI-PDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp CEEEC-CGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred eCCcC-CHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 44332 4567789999999999986 33 22211000 00 000 000011222233 4555555444211111
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+. ....++ |++|++.++.--...|..+..+++|+.+++..+..
T Consensus 191 ~~----~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 191 PP----TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CG----GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred Ch----HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 11 112233 77777777632223444556778888888876544
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.91 E-value=5.9e-09 Score=83.91 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=91.0
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
+|....++|++|+++++.. ..++...+..+++|++|++ ++ .+..++.. ....+++|++|+++
T Consensus 22 ip~~l~~~l~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---------------~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 22 IPDNLPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDG---------------AYQSLSHLSTLILT 84 (276)
T ss_dssp CCSSSCTTCCEEECTTCCC-CEECTTTTTTCTTCSEEECTTC-CCCEECTT---------------TTTTCTTCCEEECT
T ss_pred cCCCCCCCccEEECCCCcc-cccCHhHhccccCCcEEECCCC-cCCccCHH---------------HccCCcCCCEEECC
Confidence 5555566899999998654 3444434678999999999 55 56665431 11224455555555
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCc-----cccc-ccccccccccceeecCcCCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDV-----AGAN-LEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~-----~~~~-~~~~~~~p~L~~L~l~~~~~ 163 (225)
++. ++.+. +.....+++|++|++.++. +..++...... . ... .... +.....+++|++|.+.++.
T Consensus 85 ~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~- 160 (276)
T 2z62_A 85 GNP-IQSLA-LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK- 160 (276)
T ss_dssp TCC-CCEEC-TTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-
T ss_pred CCc-cCccC-hhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-
Confidence 442 22221 1223344455555544442 22221100000 0 000 0000 1234456778888777763
Q ss_pred cceeecCCCccceeCCCcc----EEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 164 LTSFCSGVVDYTFKFPSLE----DLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~----~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
++.+.... ...+++|+ +|++.++ .++.+|.......+|+++++.++..
T Consensus 161 l~~~~~~~---~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 161 IQSIYCTD---LRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQL 212 (276)
T ss_dssp CCEECGGG---GHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCC
T ss_pred CCcCCHHH---hhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCce
Confidence 33333211 12234444 6777776 5667776555556899999986544
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.90 E-value=5.1e-09 Score=85.30 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=90.3
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---ccccc---ccccccccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGV---SKLALIKISFGNL 88 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~---~~l~~~~~~l~~L 88 (225)
||...+.++..+.+.+.......+ ...+++|++|++ +| .+..+........ ..+.. ..+.+ ...+++|
T Consensus 18 f~d~~l~~~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L 92 (291)
T 1h6t_A 18 FSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNL 92 (291)
T ss_dssp CCSHHHHHHHHHHTTCSCTTSEEC---HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred CCCHHHHHHHHHHhcCCCcccccc---hhhcCcccEEEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCC
Confidence 344344444444444332222222 457899999999 55 4554422111100 00110 01111 3345555
Q ss_pred ceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceee
Q 046905 89 THLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+.|+++++ .++.+ .....+++|++|++.+|. +..+ .....+++|+.|.+.++ .++.+.
T Consensus 93 ~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~n~-i~~~----------------~~l~~l~~L~~L~l~~n-~l~~~~ 150 (291)
T 1h6t_A 93 GWLFLDEN-KVKDL---SSLKDLKKLKSLSLEHNG-ISDI----------------NGLVHLPQLESLYLGNN-KITDIT 150 (291)
T ss_dssp CEEECCSS-CCCCG---GGGTTCTTCCEEECTTSC-CCCC----------------GGGGGCTTCCEEECCSS-CCCCCG
T ss_pred CEEECCCC-cCCCC---hhhccCCCCCEEECCCCc-CCCC----------------hhhcCCCCCCEEEccCC-cCCcch
Confidence 55555555 23332 123455555555555553 3222 23446788888888876 233332
Q ss_pred cCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
....+++|++|++++| +++.++. ...+++|+.++++++..
T Consensus 151 -----~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 151 -----VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp -----GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred -----hhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCCcC
Confidence 2346899999999998 6676665 67889999999987644
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.88 E-value=1.4e-09 Score=95.65 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=91.0
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|++|+++++.... .+...+..+++|++|++ ++ .+..++.. ....+++|++|+++++.
T Consensus 47 ~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---------------~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 47 RACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDN-HLSSLSSS---------------WFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp SSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTS-CCCSCCHH---------------HHTTCTTCCEEECTTCC
T ss_pred hcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCC-ccCccCHH---------------HhccCCCCcEEECCCCc
Confidence 348899999999866444 44334678999999999 54 44443321 12346677777777663
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCC-----Cc-----ccccccccccccccceeecCcCCCccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS-----DV-----AGANLEEEILFSKLRYMTMLDLENLTSF 167 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~-----~~-----~~~~~~~~~~~p~L~~L~l~~~~~L~~~ 167 (225)
++.+..+.....+++|++|++.++..+..++......-. +. .+..+.....+++|++|.+.+... ..+
T Consensus 110 -l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~ 187 (549)
T 2z81_A 110 -YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFL 187 (549)
T ss_dssp -CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTH
T ss_pred -ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-ccc
Confidence 433222234456677777777776544444311100000 00 000011222344455555443321 111
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceec---CC-CCCCCCeeEEEecCCce
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFT---SG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp---~~-~~~~~~L~~l~i~~~~~ 215 (225)
... ....+++|++|++.++ +++.++ .. ....++|+.+++.++..
T Consensus 188 ~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 188 LEI---FADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp HHH---HHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred chh---hHhhcccccEEEccCC-ccccccccccchhhhhhcccceecccccc
Confidence 110 0123788899998887 344432 11 13467888888876654
No 61
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.88 E-value=1.3e-08 Score=85.00 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=96.7
Q ss_pred cEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccccc----ccc-ccccccccceEecc
Q 046905 25 RRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVSK----LAL-IKISFGNLTHLVVF 94 (225)
Q Consensus 25 ~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~~----l~~-~~~~l~~L~~L~i~ 94 (225)
+++.-++ ..++.+|..+ .+++++|+++-..++.++... +... ..+.... ++. .+..+++|+.+.+.
T Consensus 12 ~~v~C~~-~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEES-TTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecC-CCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4444443 3456778653 578999999556788876521 1111 0111111 111 12234555555555
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCC-----ccc---cc---ccccccc-cccceeecCcCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSD-----VAG---AN---LEEEILF-SKLRYMTMLDLE 162 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~-----~~~---~~---~~~~~~~-p~L~~L~l~~~~ 162 (225)
++.+++.+. +.....+++|+.|++.++. +..++......... ..+ .. ....... ..++.|.+.+.
T Consensus 88 ~~N~l~~l~-~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N- 164 (350)
T 4ay9_X 88 KANNLLYIN-PEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN- 164 (350)
T ss_dssp EETTCCEEC-TTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-
T ss_pred cCCcccccC-chhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-
Confidence 555666553 2334567777777777664 44443221110000 000 00 0001111 23555555443
Q ss_pred CcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 163 NLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 163 ~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
+++.+..+. +..++|++|.+.++..++.+|.+ +..+++|+.|+++++..
T Consensus 165 ~i~~i~~~~----f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 165 GIQEIHNSA----FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp CCCEECTTS----STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred cccCCChhh----ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 455565543 34568999999999999999875 46789999999986644
No 62
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.88 E-value=6.1e-09 Score=82.82 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=93.4
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
.+++|++|+++++... .++...+..+++|++|+++...+..++. .....+++|+.|+++++ .+
T Consensus 57 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------~~~~~l~~L~~L~L~~N-~l 119 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPL---------------GVFDHLTQLDKLYLGGN-QL 119 (251)
T ss_dssp TCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCT---------------TTTTTCTTCCEEECCSS-CC
T ss_pred CcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccCh---------------hHhcccCCCCEEEcCCC-cC
Confidence 4789999999986544 4444446789999999994445554432 12335789999999998 56
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCC
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFP 179 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p 179 (225)
+.+. +.....+++|+.|++.++. +..++. .....+++|++|.+.+. .++.+.... ...++
T Consensus 120 ~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~ 179 (251)
T 3m19_A 120 KSLP-SGVFDRLTKLKELRLNTNQ-LQSIPA--------------GAFDKLTNLQTLSLSTN-QLQSVPHGA---FDRLG 179 (251)
T ss_dssp CCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCSCCCTTT---TTTCT
T ss_pred CCcC-hhHhccCCcccEEECcCCc-CCccCH--------------HHcCcCcCCCEEECCCC-cCCccCHHH---HhCCC
Confidence 6553 3345678999999999884 665542 12346789999999887 444454322 24578
Q ss_pred CccEEEEeCCC
Q 046905 180 SLEDLIVTGCC 190 (225)
Q Consensus 180 ~L~~L~I~~C~ 190 (225)
+|++|++.+++
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 99999998764
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.88 E-value=3.5e-09 Score=93.74 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=48.3
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
++|+.|.+.++ +++.++.+. ..+++|++|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~----~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDV----THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTT----TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CcCCEEECCCC-cCcccChhh----cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 68999999888 677776553 47899999999997 68889987 67889999999986544
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.86 E-value=9.9e-09 Score=88.81 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=98.9
Q ss_pred cccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---ccccc---cccccccccccccce
Q 046905 18 RHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGV---SKLALIKISFGNLTH 90 (225)
Q Consensus 18 ~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~---~~l~~~~~~l~~L~~ 90 (225)
.+.+++|+.|+++++... .++. +..+++|++|++ +| .+..+........ -.+.. ...++ ...+++|+.
T Consensus 217 ~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTN 291 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred ccccCCCCEEECCCCCcc-cchh--hhcCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence 456889999999986533 3332 577899999999 55 3443332221111 00111 11111 345677777
Q ss_pred EeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecC
Q 046905 91 LVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSG 170 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~ 170 (225)
|++.+| .++.+. ....+++|+.|++++|. +..++ ....+++|+.|.+.++ .++.+.
T Consensus 292 L~L~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~----------------~~~~l~~L~~L~l~~n-~l~~~~-- 347 (466)
T 1o6v_A 292 LELNEN-QLEDIS---PISNLKNLTYLTLYFNN-ISDIS----------------PVSSLTKLQRLFFYNN-KVSDVS-- 347 (466)
T ss_dssp EECCSS-CCSCCG---GGGGCTTCSEEECCSSC-CSCCG----------------GGGGCTTCCEEECCSS-CCCCCG--
T ss_pred EEcCCC-cccCch---hhcCCCCCCEEECcCCc-CCCch----------------hhccCccCCEeECCCC-ccCCch--
Confidence 777776 344442 24567777777777774 33322 2346788888888887 444442
Q ss_pred CCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 171 VVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 171 ~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
....+++|+.|++.+|+- ...+. ...+++|+.+.+.++.+
T Consensus 348 ---~l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 348 ---SLANLTNINWLSAGHNQI-SDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp ---GGTTCTTCCEEECCSSCC-CBCGG-GTTCTTCCEEECCCEEE
T ss_pred ---hhccCCCCCEEeCCCCcc-Cccch-hhcCCCCCEEeccCCcc
Confidence 124578899999988854 44333 56788888888876544
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.86 E-value=1.6e-08 Score=83.49 Aligned_cols=174 Identities=15% Similarity=0.140 Sum_probs=106.2
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEecc-CCccc-cc-----cccc---ccccccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSN-EGCLE-SH-----VGVS---KLALIKI 83 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~-~~~~~-~~-----l~~~---~l~~~~~ 83 (225)
.+|...+++|+.|+++++.. ..++...+..+++|++|++ ++. +...... ..... .+ +... .++. .
T Consensus 114 ~l~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~ 189 (330)
T 1xku_A 114 ELPEKMPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--G 189 (330)
T ss_dssp BCCSSCCTTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--S
T ss_pred ccChhhcccccEEECCCCcc-cccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCc--c
Confidence 35556668999999997653 4566666788999999999 543 3211000 00000 00 1111 1111 1
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
.+++|+.|+++++. ++.+. +.....+++|++|+++++. +..++. .....+++|++|.+.++ .
T Consensus 190 ~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~ 251 (330)
T 1xku_A 190 LPPSLTELHLDGNK-ITKVD-AASLKGLNNLAKLGLSFNS-ISAVDN--------------GSLANTPHLRELHLNNN-K 251 (330)
T ss_dssp CCTTCSEEECTTSC-CCEEC-TGGGTTCTTCCEEECCSSC-CCEECT--------------TTGGGSTTCCEEECCSS-C
T ss_pred ccccCCEEECCCCc-CCccC-HHHhcCCCCCCEEECCCCc-CceeCh--------------hhccCCCCCCEEECCCC-c
Confidence 23678888888773 55442 3445677888888888775 443321 23456789999999887 4
Q ss_pred cceeecCCCccceeCCCccEEEEeCCCCCceecCCCC-------CCCCeeEEEecCCce
Q 046905 164 LTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDL-------ITPKRVDAWYSESAC 215 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~-------~~~~L~~l~i~~~~~ 215 (225)
++.++... ..+++|++|++.++ +++.+|.... ..+.++.+.+.++.+
T Consensus 252 l~~lp~~l----~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 252 LVKVPGGL----ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CSSCCTTT----TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CccCChhh----ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 55555432 45789999999987 5676664321 246788888876654
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.85 E-value=1e-08 Score=91.26 Aligned_cols=187 Identities=14% Similarity=0.059 Sum_probs=94.5
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccC--Cccc---cccccc----cccc-cccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNE--GCLE---SHVGVS----KLAL-IKISFGNL 88 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~--~~~~---~~l~~~----~l~~-~~~~l~~L 88 (225)
.+++|+.|+++++. +..+|.. +..+++|++|++ ++ .+..++... .... -.+... .++. ....+++|
T Consensus 276 ~l~~L~~L~l~~n~-l~~lp~~-l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 276 CFSGLQELDLTATH-LSELPSG-LVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TCTTCSEEECTTSC-CSCCCSS-CCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred cccCCCEEeccCCc-cCCCChh-hcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 47899999999865 3467765 578999999999 55 344332211 0000 001111 1111 23456777
Q ss_pred ceEeccCccCccccC-CchHHhhcccCCEEEEecCcccccccccccCC--C---CCccc-----cc-cccccccccccee
Q 046905 89 THLVVFSCKKLMNLV-PSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVAG-----AN-LEEEILFSKLRYM 156 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~~-----~~-~~~~~~~p~L~~L 156 (225)
+.|+++++. +.... .+.....+++|++|++.+|. +..++...... . .+.++ .. ......+++|+.|
T Consensus 353 ~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 353 RELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CEEECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 777777763 33321 12334567778888887775 33332111000 0 00000 00 0112345566666
Q ss_pred ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCc-eec--CCCCCCCCeeEEEecCCce
Q 046905 157 TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMK-IFT--SGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 157 ~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~-~lp--~~~~~~~~L~~l~i~~~~~ 215 (225)
.+.++.-- ..... ....+++|++|++.+|+--. .+| ..+..+++|+.++++++..
T Consensus 431 ~l~~n~l~-~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 431 NLSHSLLD-ISSEQ---LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp ECTTCCCB-TTCTT---TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred ECCCCccC-CcCHH---HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 66655321 11111 12346777777777774322 122 2245667777777775543
No 67
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.85 E-value=9.8e-09 Score=79.18 Aligned_cols=138 Identities=18% Similarity=0.236 Sum_probs=88.6
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+..++|+.|+++++.. ..++...+..+++|++|+++...+..++.. .+..+++|++|++.
T Consensus 21 ~~p~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 21 SVPTGIPAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNG---------------VFNKLTSLTYLNLS 84 (208)
T ss_dssp SCCSCCCTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEECC
T ss_pred CCCCCCCCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCccCccChh---------------hcCCCCCcCEEECC
Confidence 34556677899999988653 345555457789999999933455544321 12347888999988
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|+.|++.++. +..++. .....+++|++|.+.+. .++.+....
T Consensus 85 ~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~l~~N-~l~~~~~~~--- 143 (208)
T 2o6s_A 85 TN-QLQSLP-NGVFDKLTQLKELALNTNQ-LQSLPD--------------GVFDKLTQLKDLRLYQN-QLKSVPDGV--- 143 (208)
T ss_dssp SS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCSCCCTTT---
T ss_pred CC-cCCccC-HhHhcCccCCCEEEcCCCc-CcccCH--------------hHhccCCcCCEEECCCC-ccceeCHHH---
Confidence 87 455542 2334678888998888774 544431 12345678888888775 344444321
Q ss_pred ceeCCCccEEEEeCC
Q 046905 175 TFKFPSLEDLIVTGC 189 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C 189 (225)
...+++|++|++.++
T Consensus 144 ~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred hccCCCccEEEecCC
Confidence 234778888888774
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.84 E-value=5.8e-09 Score=85.51 Aligned_cols=175 Identities=13% Similarity=0.026 Sum_probs=96.0
Q ss_pred ccccCccEEEEeeCCccccCCH---hHHHhccCCcEEEEeccccceEeccC--Cccc---ccccccc------cc--ccc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPV---GLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVSK------LA--LIK 82 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~~------l~--~~~ 82 (225)
..+++|++|+++++......+. ..+..+++|++|+++...+..++... .... ..+.... ++ ...
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 4478999999998665444331 11235889999999333444443211 1100 0011111 11 111
Q ss_pred ccccccceEeccCccCccccCC-c-hHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCc
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVP-S-SVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLD 160 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~-~-~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 160 (225)
..+++|++|++++| +++.+.. + .....+++|++|+++++. +..+..... .....+++|++|.+.+
T Consensus 194 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~-----------~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 194 HKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA-----------PRCMWSSALNSLNLSF 260 (310)
T ss_dssp TSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC-----------SSCCCCTTCCCEECCS
T ss_pred hcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH-----------HhccCcCcCCEEECCC
Confidence 34666777777766 3443210 0 012456777777777664 333211000 1112237888888877
Q ss_pred CCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 161 LENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 161 ~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+ .++.++... +++|++|+++++ +++.+|. ...+++|+.++++++.+
T Consensus 261 N-~l~~lp~~~------~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 261 A-GLEQVPKGL------PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp S-CCCSCCSCC------CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred C-CCCchhhhh------cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence 6 355555432 478999999887 6676665 46778899988876654
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.83 E-value=2e-08 Score=89.37 Aligned_cols=186 Identities=13% Similarity=0.049 Sum_probs=100.7
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccc-cc-ccccccccccceEe
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVS-KL-ALIKISFGNLTHLV 92 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~-~l-~~~~~~l~~L~~L~ 92 (225)
..+++|+.|++.++.. ..+| . +..+++|++|++ +|.- ..++.. .... ..+... .. ......+++|+.|+
T Consensus 282 ~~l~~L~~L~l~~~~~-~~l~-~-l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSI-KYLE-D-VPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp GGGTTCSEEEEESCCC-CCCC-C-CCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred ccCCCCCEEEecCccc-hhhh-h-ccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 3466777777776443 3444 1 455677777777 5543 444422 1111 001000 00 01233467788888
Q ss_pred ccCccCccccC-CchHHhhcccCCEEEEecCcccccccccccC-CC---CCcc-----cccc-cccccccccceeecCcC
Q 046905 93 VFSCKKLMNLV-PSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-GD---SDVA-----GANL-EEEILFSKLRYMTMLDL 161 (225)
Q Consensus 93 i~~C~~L~~l~-~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-~~---~~~~-----~~~~-~~~~~~p~L~~L~l~~~ 161 (225)
++++. +.... .+.....+++|++|++.+|. +..++..-.. .. ...+ +... .....+++|++|.+.++
T Consensus 357 ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 87773 33331 13455677888888887775 4443311000 00 0000 0011 23345678888888887
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCc-eecCCCCCCCCeeEEEecCCce
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMK-IFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~-~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.--..... ....+++|++|++.+|.--. .+|..+..+++|+.++++++..
T Consensus 435 ~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 435 NTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCccchh----hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 64332222 12457899999999984433 2677778889999999987644
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=2.2e-08 Score=93.13 Aligned_cols=159 Identities=16% Similarity=0.065 Sum_probs=98.7
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
++|+.|+++++.. ..+|......+++|++|+++...+..++...... ..+....+++|+.|++++| .+..
T Consensus 673 ~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~--------~~~~l~nl~~L~~L~Ls~N-~L~~ 742 (876)
T 4ecn_A 673 INASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMTSIPENSLKP--------KDGNYKNTYLLTTIDLRFN-KLTS 742 (876)
T ss_dssp CCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC--------TTSCCTTGGGCCEEECCSS-CCCC
T ss_pred CCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCcCCccChHHhcc--------ccccccccCCccEEECCCC-CCcc
Confidence 3677777766543 3566665556777777777223444443321000 0011123558999999988 5665
Q ss_pred cCCchHHh--hcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc------ceeecCCCc
Q 046905 102 LVPSSVAK--SLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL------TSFCSGVVD 173 (225)
Q Consensus 102 l~~~~~~~--~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L------~~~~~~~~~ 173 (225)
+ +.... .+++|+.|+++++. +..++ .....+++|+.|.+.+++.+ ..++.
T Consensus 743 l--p~~l~~~~l~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~---- 800 (876)
T 4ecn_A 743 L--SDDFRATTLPYLSNMDVSYNC-FSSFP---------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPT---- 800 (876)
T ss_dssp C--CGGGSTTTCTTCCEEECCSSC-CSSCC---------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCT----
T ss_pred c--hHHhhhccCCCcCEEEeCCCC-CCccc---------------hhhhcCCCCCEEECCCCCCcccccccccChH----
Confidence 4 34444 78999999998875 55443 23456788999988775422 22222
Q ss_pred cceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 174 YTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
....+++|+.|++++|. +..+|.... ++|+.|+++++.+
T Consensus 801 ~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTT
T ss_pred HHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCC
Confidence 12458899999999884 488887643 6889998886643
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.82 E-value=3.6e-09 Score=86.77 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=89.3
Q ss_pred ccCccEEEEeeCCccccCCHhHH-HhccCCcEEEE-eccccceEec-cCCcccccccccccccccccccccceEeccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLL-EVLHSLETLHL-SCTSYKEIFS-NEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l-~c~~l~~~~~-~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
+++|++|+++++......|...+ ..+++|++|++ ++. +..... ... .....+++|++|+++++.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~------------~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAE------------LQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHH------------HHTTBCSCCCEEEEECCS
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHH------------HHhhhccCCCEEEeeCCC
Confidence 56899999999776666665432 67999999999 543 332110 000 001124445555554442
Q ss_pred CccccCCchHHhhcccCCEEEEecCccccc--cccccc---C---CCCCccc--cc--cc----ccccccccceeecCcC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQ--VVASCD---Q---GDSDVAG--AN--LE----EEILFSKLRYMTMLDL 161 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~--l~~~~~---~---~~~~~~~--~~--~~----~~~~~p~L~~L~l~~~ 161 (225)
+.... +.....+++|++|+++++.-... ++.... . .....+. .. .. -...+++|++|.+.++
T Consensus 157 -l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 157 -SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp -SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred -cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 22221 12223444555555544431110 000000 0 0000000 00 00 1235588889988876
Q ss_pred CCccee-ecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 162 ENLTSF-CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 162 ~~L~~~-~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
. ++.+ +.... ....+++|++|+++++ +++.+|... .++|+.++++.+..
T Consensus 235 ~-l~~~~p~~~~-~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 235 S-LRATVNPSAP-RCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSNRL 284 (310)
T ss_dssp C-CCCCCCSCCS-SCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSCCC
T ss_pred C-CCccchhhHH-hccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCCcC
Confidence 4 3333 22110 0112379999999887 677888765 37999999986654
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.82 E-value=6.7e-09 Score=85.45 Aligned_cols=60 Identities=7% Similarity=-0.061 Sum_probs=45.8
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.+++|++|.+.++. ++.+... ..+++|++|+++++ +++.+|..+..+++|+.++++++..
T Consensus 167 ~l~~L~~L~L~~N~-l~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 167 SSDTLEHLNLQYNF-IYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp GTTTCCEEECTTSC-CCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC
T ss_pred ccCcCCEEECCCCc-Ccccccc-----cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCcc
Confidence 46788888888774 5555432 24889999999997 6788887777889999999986644
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.81 E-value=3.3e-09 Score=93.59 Aligned_cols=159 Identities=17% Similarity=0.045 Sum_probs=88.6
Q ss_pred cccccccCccEEEEeeCCccccC--CHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEe
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGF--PVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLV 92 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~ 92 (225)
++...+++|+.|+++++...... +.. +..+++|++|++ +|. +..++.. ...+++|+.|+
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~----------------~~~l~~L~~L~ 402 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFNG-VITMSSN----------------FLGLEQLEHLD 402 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHH-HHTCSCCCEEECCSCS-EEEEEEE----------------EETCTTCCEEE
T ss_pred cccccCCCCCEEeCcCCccCcccccccc-ccccCccCEEECCCCc-ccccccc----------------ccccCCCCEEE
Confidence 34467899999999986543221 333 578999999999 553 4444321 22356667777
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc-ceeecCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL-TSFCSGV 171 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L-~~~~~~~ 171 (225)
+.+|. +....+......+++|+.|++.+|. +..++. .....+++|+.|.+.++.-- ..++..
T Consensus 403 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~p~~- 465 (570)
T 2z63_A 403 FQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN--------------GIFNGLSSLEVLKMAGNSFQENFLPDI- 465 (570)
T ss_dssp CTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECCT--------------TTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred ccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccch--------------hhhhcCCcCcEEECcCCcCccccchhh-
Confidence 66663 3332222234556667777766664 222211 12234566666666666422 122221
Q ss_pred CccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
...+++|++|++.+|. ++.+ |..+..+++|+++++.++
T Consensus 466 ---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 466 ---FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp ---CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred ---hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC
Confidence 1346666777766663 3433 445556666666666644
No 74
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.81 E-value=1.4e-08 Score=87.19 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=47.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
..++|++|+++++......|. .+..+++|++|++ ++.-...++.. .+..+++|++|+++++.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~---------------~~~~l~~L~~L~Ls~n~- 90 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNN---------------TFRGLSSLIILKLDYNQ- 90 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTT---------------TTTTCTTCCEEECTTCT-
T ss_pred CCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcc---------------cccccccCCEEeCCCCc-
Confidence 346889999887654443343 3577888999988 66433333221 12235556666666553
Q ss_pred ccccCCchHHhhcccCCEEEEecCc
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
+.... +.....+++|++|++.+|.
T Consensus 91 l~~~~-~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 91 FLQLE-TGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp TCEEC-TTTTTTCTTCCEEECTTSC
T ss_pred cCccC-hhhccCcccCCEEeCCCCC
Confidence 33321 2334455666666666554
No 75
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.80 E-value=2.2e-08 Score=78.15 Aligned_cols=35 Identities=6% Similarity=-0.127 Sum_probs=16.6
Q ss_pred CCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 178 FPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
+++|++|++.++ +++.+ |..+..+++|+.+++.++
T Consensus 128 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 128 LSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 455555555554 33433 333344555555555543
No 76
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=1.3e-08 Score=81.65 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=71.1
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
..+++|+.|+++++. +..++. +..+++|++|+++...+..++. ...+++|+.|+++++ .
T Consensus 38 ~~l~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-----------------l~~l~~L~~L~L~~N-~ 96 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQSLAG--MQFFTNLKELHLSHNQISDLSP-----------------LKDLTKLEELSVNRN-R 96 (263)
T ss_dssp HHHTTCSEEECTTSC-CCCCTT--GGGCTTCCEEECCSSCCCCCGG-----------------GTTCSSCCEEECCSS-C
T ss_pred hhcCcCcEEECcCCC-cccchH--HhhCCCCCEEECCCCccCCChh-----------------hccCCCCCEEECCCC-c
Confidence 346778888887654 334552 5677888888873334444432 223555666666655 3
Q ss_pred ccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeC
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKF 178 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~ 178 (225)
++.+. .. .. ++|+.|++++|. +..++ ....+++|+.|.+.++. ++.+.. ...+
T Consensus 97 l~~l~--~~-~~-~~L~~L~L~~N~-l~~~~----------------~l~~l~~L~~L~Ls~N~-i~~~~~-----l~~l 149 (263)
T 1xeu_A 97 LKNLN--GI-PS-ACLSRLFLDNNE-LRDTD----------------SLIHLKNLEILSIRNNK-LKSIVM-----LGFL 149 (263)
T ss_dssp CSCCT--TC-CC-SSCCEEECCSSC-CSBSG----------------GGTTCTTCCEEECTTSC-CCBCGG-----GGGC
T ss_pred cCCcC--cc-cc-CcccEEEccCCc-cCCCh----------------hhcCcccccEEECCCCc-CCCChH-----HccC
Confidence 33331 11 11 556666665553 33321 22344555555555442 222221 1235
Q ss_pred CCccEEEEeCCCCCceecCCCCCCCCeeEEEecC
Q 046905 179 PSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSE 212 (225)
Q Consensus 179 p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~ 212 (225)
++|++|+++++ +++.+ ..+..+++|+.+++.+
T Consensus 150 ~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 150 SKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp TTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEE
T ss_pred CCCCEEECCCC-cCcch-HHhccCCCCCEEeCCC
Confidence 55666665554 33333 2234455555555543
No 77
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=9.2e-09 Score=76.65 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=94.8
Q ss_pred ccccccCccEEEEeeCCcc-ccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 17 PRHLFGRLRRLEVVRDDVA-TGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~-~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
+....++|+.|+++++... ..+|.. +..+++|++|++ +|. +..+ . ....+++|+.|+++
T Consensus 19 ~~~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~-~----------------~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 19 RNRTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVG-LISV-S----------------NLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSC-CCCC-S----------------SCCCCSSCCEEEEE
T ss_pred ccCCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCC-CCCh-h----------------hhccCCCCCEEECc
Confidence 3445679999999986643 356654 478999999999 554 5544 1 12348899999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
+|. +... .+.....+++|+.|++.+|. +..++.. .....+++|++|.+.+++ +..+.......
T Consensus 80 ~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~ 142 (168)
T 2ell_A 80 ENR-IFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTL-------------EPLKKLECLKSLDLFNCE-VTNLNDYRESV 142 (168)
T ss_dssp SCC-CCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGG-------------GGGSSCSCCCEEECCSSG-GGTSTTHHHHH
T ss_pred CCc-CchH-HHHHHhhCCCCCEEeccCCc-cCcchhH-------------HHHhcCCCCCEEEeeCCc-CcchHHHHHHH
Confidence 984 5553 25566679999999999984 5554311 134467889999988873 22222100001
Q ss_pred ceeCCCccEEEEeCCCCCceecC
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTS 197 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~ 197 (225)
...+|+|++|++.+|+ ++.+|.
T Consensus 143 ~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 143 FKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp HTTCSSCCEETTEETT-SCBCCS
T ss_pred HHhCccCcEecCCCCC-hhhccc
Confidence 2358899999998884 444554
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.79 E-value=7.5e-09 Score=92.66 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=105.9
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|+.|.+.++. +..++. +..+++|+.|++ +| .+..++. ...+++|+.|++++|
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-----------------l~~l~~L~~L~Ls~N- 97 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-----------------LTNLKNLGWLFLDEN- 97 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCTT--GGGCTTCCEEECTTS-CCCCCGG-----------------GGGCTTCCEEECCSS-
T ss_pred hcCCCCCEEECcCCC-CCCChH--HccCCCCCEEEeeCC-CCCCChh-----------------hccCCCCCEEECcCC-
Confidence 457888888888755 344453 578899999999 54 3444322 335889999999998
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
.+..+ ..+..+++|+.|++.+|. +..++ ....+++|+.|.|.++ .++.+. ....
T Consensus 98 ~l~~l---~~l~~l~~L~~L~Ls~N~-l~~l~----------------~l~~l~~L~~L~Ls~N-~l~~l~-----~l~~ 151 (605)
T 1m9s_A 98 KIKDL---SSLKDLKKLKSLSLEHNG-ISDIN----------------GLVHLPQLESLYLGNN-KITDIT-----VLSR 151 (605)
T ss_dssp CCCCC---TTSTTCTTCCEEECTTSC-CCCCG----------------GGGGCTTCSEEECCSS-CCCCCG-----GGGS
T ss_pred CCCCC---hhhccCCCCCEEEecCCC-CCCCc----------------cccCCCccCEEECCCC-ccCCch-----hhcc
Confidence 45554 245788999999999886 44432 3456899999999887 344432 2346
Q ss_pred CCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+++|+.|++++| ++..++. +..+++|+.|+++++..
T Consensus 152 l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 152 LTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred cCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCCCC
Confidence 899999999998 5666654 67889999999987644
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.78 E-value=3.4e-08 Score=89.15 Aligned_cols=63 Identities=8% Similarity=-0.076 Sum_probs=45.1
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~~~~ 215 (225)
..+++|+.|.+.++ +++.++.+. ...+++|+.|++.++ +++.+|... ..+++|+.+++.++..
T Consensus 533 ~~l~~L~~L~L~~N-~l~~i~~~~---~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 533 KGLSHLHILNLESN-GFDEIPVEV---FKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCC-CCCCCCHHH---cccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 45678888888776 455555432 245789999999775 778887653 5788999999987644
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.76 E-value=2.3e-08 Score=88.90 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=92.3
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEec
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVV 93 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i 93 (225)
.+|.+.-+++++|+++++. +..+|...+..+++|++|++ +| .+..+++. .+..+++|++|++
T Consensus 45 ~vP~~lp~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~---------------~f~~L~~L~~L~L 107 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDG---------------AYQSLSHLSTLIL 107 (635)
T ss_dssp SCCSSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTT---------------TTTTCTTCCEEEC
T ss_pred ccCCCCCcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-cCCCcChh---------------HhcCCCCCCEEEc
Confidence 3555545589999998754 45565555678999999999 55 56666431 2345788999999
Q ss_pred cCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCc
Q 046905 94 FSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVD 173 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~ 173 (225)
+++ +++.+. +.....+++|++|++.++. +..++. .....+++|++|.+.+.. ++.+....
T Consensus 108 s~N-~l~~l~-~~~f~~L~~L~~L~Ls~N~-l~~l~~--------------~~~~~L~~L~~L~Ls~N~-l~~~~~~~-- 167 (635)
T 4g8a_A 108 TGN-PIQSLA-LGAFSGLSSLQKLVAVETN-LASLEN--------------FPIGHLKTLKELNVAHNL-IQSFKLPE-- 167 (635)
T ss_dssp TTC-CCCEEC-GGGGTTCTTCCEEECTTSC-CCCSTT--------------CCCTTCTTCCEEECCSSC-CCCCCCCG--
T ss_pred cCC-cCCCCC-HHHhcCCCCCCEEECCCCc-CCCCCh--------------hhhhcCcccCeeccccCc-cccCCCch--
Confidence 988 477663 3456778899999998884 555542 123456778888777652 22222211
Q ss_pred cceeCCCccEEEEeCCCCCcee
Q 046905 174 YTFKFPSLEDLIVTGCCNMKIF 195 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~~L~~l 195 (225)
....+++|++|++.++ +++.+
T Consensus 168 ~~~~l~~L~~L~L~~N-~l~~~ 188 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSN-KIQSI 188 (635)
T ss_dssp GGGGCTTCCEEECCSS-CCCEE
T ss_pred hhccchhhhhhcccCc-ccccc
Confidence 2234677888887776 34433
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.76 E-value=4.7e-08 Score=84.55 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=96.0
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---ccccc---cccccccccccccceE
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGV---SKLALIKISFGNLTHL 91 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~---~~l~~~~~~l~~L~~L 91 (225)
..+++|+.|+++++......| ++.+++|++|++ +| .+..+........ ..+.. ....+ ...+++|+.|
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP---LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred ccCCCCCEEEecCCccccccc---ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence 468899999999876544333 467999999999 55 3444322111100 00100 01111 3334555555
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
++++| .+..+. ....+++|+.|++.+|. +..++ ....+++|+.|.+.++. ++.+..
T Consensus 271 ~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~----------------~~~~l~~L~~L~L~~n~-l~~~~~-- 326 (466)
T 1o6v_A 271 KLGAN-QISNIS---PLAGLTALTNLELNENQ-LEDIS----------------PISNLKNLTYLTLYFNN-ISDISP-- 326 (466)
T ss_dssp ECCSS-CCCCCG---GGTTCTTCSEEECCSSC-CSCCG----------------GGGGCTTCSEEECCSSC-CSCCGG--
T ss_pred ECCCC-ccCccc---cccCCCccCeEEcCCCc-ccCch----------------hhcCCCCCCEEECcCCc-CCCchh--
Confidence 55555 233321 13455556666665553 32221 24567889999998873 333322
Q ss_pred CccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++.+| +++.++ ....+++|+.+++.++..
T Consensus 327 ---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred ---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 236899999999998 566664 356789999999986654
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.74 E-value=1.7e-09 Score=95.91 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=94.6
Q ss_pred cccCccEEEEeeCCccccCC--------------HhHHHhccCCcEEEE-eccccceEeccCCccccccccccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFP--------------VGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKIS 84 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p--------------~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 84 (225)
.|++|+.|.+.++.....+. ..+...+++|++|++ +|. +..... ......
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~--------------~~l~~~ 128 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL--------------ELIAKS 128 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH--------------HHHHHH
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH--------------HHHHHh
Confidence 46788888888754332221 122356788888888 653 221100 011114
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+++|++|++.+|..+...........+++|++|++.+|. +.......- ......+++|++|.+.++.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l----------~~~~~~~~~L~~L~l~~~~-- 195 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL----------SHFPDTYTSLVSLNISCLA-- 195 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG----------GGSCTTCCCCCEEECTTCC--
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH----------HHHhhcCCcCcEEEecccC--
Confidence 789999999999776653224455578999999999886 332111000 0112256788888888775
Q ss_pred ceeecCC-CccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 165 TSFCSGV-VDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 165 ~~~~~~~-~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
..+.... ......+|+|++|++.+|..+..+|.....+++|+++.+.
T Consensus 196 ~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 196 SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 1111100 0011236888888888886666655544556667776643
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.74 E-value=4.1e-08 Score=85.65 Aligned_cols=180 Identities=10% Similarity=0.030 Sum_probs=106.7
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccc---cccccccccccccccccceEeccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLES---HVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~---~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
+++|+.|+++++.... ++...+..+++|++|+++...+...++....... .+....+. .....++|+.|++++|
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N- 109 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANN- 109 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSS-
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCC-
Confidence 5589999999865444 4444467899999999933345554443222110 11111110 1112367888888877
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCcc-----cccccccc-cccccceeecCcCCCcce
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVA-----GANLEEEI-LFSKLRYMTMLDLENLTS 166 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~-----~~~~~~~~-~~p~L~~L~l~~~~~L~~ 166 (225)
.+..+. ...+++|+.|++.++. +..++...... . .+.+ +..+.... .+++|+.|.+.++. ++.
T Consensus 110 ~l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 110 NISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp CCCCEE----ECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred cCCCCC----ccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc
Confidence 344442 1357889999998886 44443221110 0 0111 11111222 46788888888775 455
Q ss_pred eecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 167 FCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+... ..+++|++|+++++ +++.+|..+..+++|+.++++++..
T Consensus 184 ~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 184 VKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp EECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC
T ss_pred cccc-----ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcC
Confidence 5332 24889999999987 6778877777889999999986644
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.73 E-value=2.2e-08 Score=92.91 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=51.3
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccC--Cccc---cccccc---cc-ccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNE--GCLE---SHVGVS---KL-ALIKISF 85 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~--~~~~---~~l~~~---~l-~~~~~~l 85 (225)
+|. ..++|++|+++++......|.. +..+++|++|++ +|.....+.... .... ..+... .+ +..+..+
T Consensus 19 vP~-lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 19 VPQ-VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CCS-SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCC-CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 344 4567888888875543333332 567788888888 665544442211 0000 001110 11 1223445
Q ss_pred cccceEeccCccCccc-cCCchHHhhcccCCEEEEecCc
Q 046905 86 GNLTHLVVFSCKKLMN-LVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
++|++|++++|. +.. .........+++|++|+++++.
T Consensus 97 ~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 97 FHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp SSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred cccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc
Confidence 666666666662 332 1111123456666666666654
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.72 E-value=7.5e-09 Score=84.98 Aligned_cols=177 Identities=15% Similarity=0.020 Sum_probs=92.6
Q ss_pred ccCccEEEEeeCCccccCCHhHH-HhccCCcEEEEeccccceEeccC-Cc--------ccccccc---cccc-ccccccc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLL-EVLHSLETLHLSCTSYKEIFSNE-GC--------LESHVGV---SKLA-LIKISFG 86 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l~c~~l~~~~~~~-~~--------~~~~l~~---~~l~-~~~~~l~ 86 (225)
+++|++|+++++......|...+ ..+++|++|+++...+..++..- .. ....+.. ..++ .....++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 66777777776554444554321 55677777777323333331100 00 0000000 0111 2233466
Q ss_pred ccceEeccCccCccccCCchHH--hhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVA--KSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~--~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+|+.|+++++.-......+... ..+++|++|++.++. +..++... ......+++|++|.+.++. +
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~~~~l~~L~~L~Ls~N~-l 240 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVC-----------SALAAARVQLQGLDLSHNS-L 240 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHH-----------HHHHHTTCCCSEEECTTSC-C
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHH-----------HHHHhcCCCCCEEECCCCc-C
Confidence 6777777666422211001112 456677777776664 33221100 0111245889999998774 3
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+...... ....+++|++|+++++ +++.+|.... ++|++++++++..
T Consensus 241 ~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 241 RDAAGAP--SCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CSSCCCS--CCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSCC
T ss_pred Ccccchh--hhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCCC
Confidence 3322111 1234689999999998 5778887654 8999999987655
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.72 E-value=1.7e-08 Score=93.59 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=18.5
Q ss_pred CccccCCHhHHHhccCCcEEEEeccccceEe
Q 046905 33 DVATGFPVGLLEVLHSLETLHLSCTSYKEIF 63 (225)
Q Consensus 33 ~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~ 63 (225)
..+..+|. ..++|++|+++...+..+.
T Consensus 14 ~~L~~vP~----lp~~l~~LdLs~N~i~~i~ 40 (844)
T 3j0a_A 14 CNLTQVPQ----VLNTTERLLLSFNYIRTVT 40 (844)
T ss_dssp CCSSCCCS----SCTTCCEEEEESCCCCEEC
T ss_pred CCCCCCCC----CCCCcCEEECCCCcCCccC
Confidence 34566775 3689999999445566664
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.71 E-value=1e-07 Score=82.47 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=28.2
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceE
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEI 62 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~ 62 (225)
+.+++|++|+++++.. ..+|. +..+++|++|+++...+..+
T Consensus 39 ~~l~~L~~L~Ls~n~l-~~~~~--l~~l~~L~~L~Ls~n~l~~~ 79 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSI-TDMTG--IEKLTGLTKLICTSNNITTL 79 (457)
T ss_dssp HHHTTCCEEECCSSCC-CCCTT--GGGCTTCSEEECCSSCCSCC
T ss_pred hHcCCCCEEEccCCCc-ccChh--hcccCCCCEEEccCCcCCeE
Confidence 4588999999987653 34553 67889999999933345544
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.70 E-value=9.3e-08 Score=77.77 Aligned_cols=170 Identities=16% Similarity=0.120 Sum_probs=101.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---cccccccc--ccccccccccceE
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVSKL--ALIKISFGNLTHL 91 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~~l--~~~~~~l~~L~~L 91 (225)
..+++++.+++.+.. +..+|... .+++++|+++-..+..+.... .... ..+....+ .+....+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred cccCCccEEECCCCC-CCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 347788999888644 45666542 478999999334455554311 1000 00111000 0111345666666
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
+++++ .++.+ +.....+++|+.|+++++. +..++. .....+++|++|.+.++ +++.+..+.
T Consensus 83 ~Ls~N-~l~~l--~~~~~~l~~L~~L~l~~N~-l~~l~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~ 143 (290)
T 1p9a_G 83 DLSHN-QLQSL--PLLGQTLPALTVLDVSFNR-LTSLPL--------------GALRGLGELQELYLKGN-ELKTLPPGL 143 (290)
T ss_dssp ECCSS-CCSSC--CCCTTTCTTCCEEECCSSC-CCCCCS--------------STTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred ECCCC-cCCcC--chhhccCCCCCEEECCCCc-CcccCH--------------HHHcCCCCCCEEECCCC-CCCccChhh
Confidence 66665 34433 2334556666666666653 433321 22346788999998876 455555432
Q ss_pred CccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|++.++ +++.+|.+. ..+++|+.+++.++..
T Consensus 144 ---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 144 ---LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ---TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ---cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcC
Confidence 235789999999987 688888754 5689999999986654
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.70 E-value=5.6e-08 Score=84.12 Aligned_cols=142 Identities=14% Similarity=0.045 Sum_probs=98.8
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
+.+++|++|+++++.. ..+| ++.+++|++|++ ++ .+..++ ...+++|++|+++++
T Consensus 61 ~~l~~L~~L~Ls~n~l-~~~~---~~~l~~L~~L~Ls~N-~l~~~~------------------~~~l~~L~~L~L~~N- 116 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNI-TTLD---LSQNTNLTYLACDSN-KLTNLD------------------VTPLTKLTYLNCDTN- 116 (457)
T ss_dssp GGCTTCSEEECCSSCC-SCCC---CTTCTTCSEEECCSS-CCSCCC------------------CTTCTTCCEEECCSS-
T ss_pred cccCCCCEEEccCCcC-CeEc---cccCCCCCEEECcCC-CCceee------------------cCCCCcCCEEECCCC-
Confidence 4577888888887543 3344 456788888888 43 344331 123778888888877
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
.++.+ + ...+++|+.|++.++. +..+ ....+++|++|.+.++..+..+..+ .
T Consensus 117 ~l~~l--~--~~~l~~L~~L~l~~N~-l~~l-----------------~l~~l~~L~~L~l~~n~~~~~~~~~------~ 168 (457)
T 3bz5_A 117 KLTKL--D--VSQNPLLTYLNCARNT-LTEI-----------------DVSHNTQLTELDCHLNKKITKLDVT------P 168 (457)
T ss_dssp CCSCC--C--CTTCTTCCEEECTTSC-CSCC-----------------CCTTCTTCCEEECTTCSCCCCCCCT------T
T ss_pred cCCee--c--CCCCCcCCEEECCCCc-ccee-----------------ccccCCcCCEEECCCCCcccccccc------c
Confidence 45554 1 4667888888887774 3332 1345788999999999877776443 4
Q ss_pred CCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+++|++|++.++ +++.+| ...+++|+.+++..+..
T Consensus 169 l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 169 QTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCC
T ss_pred CCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcC
Confidence 899999999998 677777 56789999999986543
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.70 E-value=5.2e-08 Score=76.02 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=48.9
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+++|+.|+++++ .+..+. +.....+++|+.|+++++. +..++. .....+++|+.|.+.+. .+
T Consensus 55 l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~--------------~~f~~l~~L~~L~L~~N-~l 116 (220)
T 2v9t_B 55 YKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNK-ITELPK--------------SLFEGLFSLQLLLLNAN-KI 116 (220)
T ss_dssp CTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CC
T ss_pred CCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCc-CCccCH--------------hHccCCCCCCEEECCCC-CC
Confidence 455555555555 233332 2233455555555555543 333321 01123455555555544 22
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCC
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSES 213 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~ 213 (225)
+.+.... ...+++|++|++.++ +++.++.. +..+++|+.+++.++
T Consensus 117 ~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 117 NCLRVDA---FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHH---cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 2222211 123556666666554 34444432 344556666666543
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.68 E-value=1.3e-08 Score=81.66 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=106.8
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
+|...+.+++.+.+.++.. ..++. +..+++|++|++ +| .+.+++. ...+++|+.|+++
T Consensus 13 ~pd~~l~~l~~l~l~~~~i-~~~~~--~~~l~~L~~L~l~~n-~i~~l~~-----------------l~~l~~L~~L~L~ 71 (263)
T 1xeu_A 13 FPDPGLANAVKQNLGKQSV-TDLVS--QKELSGVQNFNGDNS-NIQSLAG-----------------MQFFTNLKELHLS 71 (263)
T ss_dssp CCSHHHHHHHHHHHTCSCT-TSEEC--HHHHTTCSEEECTTS-CCCCCTT-----------------GGGCTTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCc-ccccc--hhhcCcCcEEECcCC-CcccchH-----------------HhhCCCCCEEECC
Confidence 4555677777777776443 33332 578999999999 55 4555431 2348999999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. . ...+++|+.|+++++. +..++. ... ++|++|.+.++ .++.+..
T Consensus 72 ~N-~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~----------------~~~-~~L~~L~L~~N-~l~~~~~----- 123 (263)
T 1xeu_A 72 HN-QISDLS--P-LKDLTKLEELSVNRNR-LKNLNG----------------IPS-ACLSRLFLDNN-ELRDTDS----- 123 (263)
T ss_dssp SS-CCCCCG--G-GTTCSSCCEEECCSSC-CSCCTT----------------CCC-SSCCEEECCSS-CCSBSGG-----
T ss_pred CC-ccCCCh--h-hccCCCCCEEECCCCc-cCCcCc----------------ccc-CcccEEEccCC-ccCCChh-----
Confidence 98 566653 2 6789999999999985 555431 112 89999999887 4544432
Q ss_pred ceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|+++++ +++.+| .+..+++|+.+++.++..
T Consensus 124 l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 124 LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSCC
T ss_pred hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCcC
Confidence 245899999999997 577776 456789999999987654
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.68 E-value=5.7e-08 Score=87.62 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=23.2
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
+|....+++++|+++++. +..++...+..+++|++|++
T Consensus 19 ip~~~~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 56 (680)
T 1ziw_A 19 VPDDLPTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDV 56 (680)
T ss_dssp CCSCSCTTCSEEECCSSC-CCCCCGGGGGGGTTCSEEEC
T ss_pred cccccCCCCcEEECCCCC-CCCcCHHHHhCCCcCcEEEC
Confidence 444444677777777654 33344444566777777777
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.67 E-value=4.9e-09 Score=92.90 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=51.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccce--Eecc----CCcccccccccc--------ccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKE--IFSN----EGCLESHVGVSK--------LALIKIS 84 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~--~~~~----~~~~~~~l~~~~--------l~~~~~~ 84 (225)
.+++|++|+++++......+..+...+++|++|++ +|..+.. +... .......+.... +......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 47789999998865333333333346889999998 7754432 1100 000000011000 1111224
Q ss_pred ccccceEeccCcc-CccccCCchHHhhcccCCEEEEecCc
Q 046905 85 FGNLTHLVVFSCK-KLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 85 l~~L~~L~i~~C~-~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
+++|+.|++++|. .+..-........+++|++|++.+|.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 5677777777775 12111111223346777777777763
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.66 E-value=1.4e-07 Score=72.63 Aligned_cols=141 Identities=21% Similarity=0.200 Sum_probs=97.6
Q ss_pred cccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccC
Q 046905 35 ATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERL 114 (225)
Q Consensus 35 ~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 114 (225)
...+|.. ..++|++|+++...+..++. .....+++|+.|++.++ .++.+. +.....+++|
T Consensus 19 l~~~p~~---~~~~l~~L~l~~n~l~~~~~---------------~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L 78 (208)
T 2o6s_A 19 RTSVPTG---IPAQTTYLDLETNSLKSLPN---------------GVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSL 78 (208)
T ss_dssp CSSCCSC---CCTTCSEEECCSSCCCCCCT---------------TTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred ccCCCCC---CCCCCcEEEcCCCccCcCCh---------------hhhcccccCcEEECCCC-ccCccC-hhhcCCCCCc
Confidence 3455543 35789999993334554432 12335889999999997 566552 3345679999
Q ss_pred CEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCce
Q 046905 115 VTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKI 194 (225)
Q Consensus 115 ~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~ 194 (225)
++|++.++. +..++. .....+++|++|.+.+. .++.+.... ...+++|++|++.++ +++.
T Consensus 79 ~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~ 138 (208)
T 2o6s_A 79 TYLNLSTNQ-LQSLPN--------------GVFDKLTQLKELALNTN-QLQSLPDGV---FDKLTQLKDLRLYQN-QLKS 138 (208)
T ss_dssp CEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCSC
T ss_pred CEEECCCCc-CCccCH--------------hHhcCccCCCEEEcCCC-cCcccCHhH---hccCCcCCEEECCCC-ccce
Confidence 999999985 555432 12346789999999876 455554431 245899999999997 6777
Q ss_pred ecCC-CCCCCCeeEEEecCCce
Q 046905 195 FTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 195 lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
+|.. +..+++|+.+++.++.+
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCB
T ss_pred eCHHHhccCCCccEEEecCCCe
Confidence 7765 46789999999987643
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.66 E-value=2e-08 Score=84.15 Aligned_cols=165 Identities=17% Similarity=0.142 Sum_probs=104.9
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHH-hccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLE-VLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~-~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
+|.....+++.|+++++.. ..++...+. .+++|++|+++-..+..++.. .+..+++|+.|+++
T Consensus 33 iP~~~~~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------------~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 33 VPQSLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSE---------------AFVPVPNLRYLDLS 96 (361)
T ss_dssp CCSSCCTTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCCCEECTT---------------TTTTCTTCCEEECC
T ss_pred cCccCCCCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcCCccChh---------------hccCCCCCCEEECC
Confidence 5555566788999987653 334433334 788999999844456665431 23457899999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|+.|++.++. +..+.. .....+++|+.|.+.+. .++.++......
T Consensus 97 ~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 158 (361)
T 2xot_A 97 SN-HLHTLD-EFLFSDLQALEVLLLYNNH-IVVVDR--------------NAFEDMAQLQKLYLSQN-QISRFPVELIKD 158 (361)
T ss_dssp SS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCEECT--------------TTTTTCTTCCEEECCSS-CCCSCCGGGTC-
T ss_pred CC-cCCcCC-HHHhCCCcCCCEEECCCCc-ccEECH--------------HHhCCcccCCEEECCCC-cCCeeCHHHhcC
Confidence 87 466653 3345678999999999876 444421 23446789999998876 344444321000
Q ss_pred ceeCCCccEEEEeCCCCCceecCC-CCCCCC--eeEEEecCCce
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTSG-DLITPK--RVDAWYSESAC 215 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~--L~~l~i~~~~~ 215 (225)
...+++|+.|++++. +++.+|.. +..++. ++.+++.++.|
T Consensus 159 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 159 GNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ---CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCc
Confidence 034889999999986 67777632 234454 46788876543
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.66 E-value=1.8e-07 Score=72.94 Aligned_cols=138 Identities=15% Similarity=0.234 Sum_probs=96.8
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
+|....++|+.|+++++.. ..++...+..+++|++|+++-..+..+.. ..+..+++|++|++++
T Consensus 26 iP~~l~~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~---------------~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 26 IPTNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAP---------------DAFQGLRSLNSLVLYG 89 (220)
T ss_dssp CCSSCCTTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECT---------------TTTTTCSSCCEEECCS
T ss_pred CCCccCcCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCH---------------HHhhCCcCCCEEECCC
Confidence 4555567999999997654 45555556889999999994445655532 2234578999999999
Q ss_pred ccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccc
Q 046905 96 CKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYT 175 (225)
Q Consensus 96 C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~ 175 (225)
+ .++.+. +.....+++|+.|++.++. +..++. .....+++|++|.+.+.. ++.+..+. .
T Consensus 90 N-~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~-l~~~~~~~---~ 148 (220)
T 2v9t_B 90 N-KITELP-KSLFEGLFSLQLLLLNANK-INCLRV--------------DAFQDLHNLNLLSLYDNK-LQTIAKGT---F 148 (220)
T ss_dssp S-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSSC-CSCCCTTT---T
T ss_pred C-cCCccC-HhHccCCCCCCEEECCCCC-CCEeCH--------------HHcCCCCCCCEEECCCCc-CCEECHHH---H
Confidence 8 566553 3445679999999999985 555432 234467899999998863 44454332 2
Q ss_pred eeCCCccEEEEeCCC
Q 046905 176 FKFPSLEDLIVTGCC 190 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~ 190 (225)
..+++|++|++.+.+
T Consensus 149 ~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCCCCCEEEeCCCC
Confidence 458899999998764
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.64 E-value=4.6e-08 Score=86.92 Aligned_cols=170 Identities=16% Similarity=0.029 Sum_probs=103.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc-cc-----ccc---ccc-cccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE-SH-----VGV---SKL-ALIKISFGNL 88 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~-~~-----l~~---~~l-~~~~~~l~~L 88 (225)
.+.+|+.+++..+......+ . +..+++|+.+++ .+...... ....... .. +.. ... +.....+++|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~-~-~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSS-N-FLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp SCSCCCEEECCSCSEEEECS-C-CTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhccccccccccc-c-ccccccccchhhhhccccccc-cccccccccccccccccccccccccccccccchhh
Confidence 35678888877644332222 2 346788888887 44322111 1100000 00 000 011 1223457889
Q ss_pred ceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceee
Q 046905 89 THLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+.|++.++.....+. +.....+++|+.|++++|. +..++. .....+++|++|.|.+. +++.+.
T Consensus 472 ~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~-L~~l~~--------------~~f~~l~~L~~L~Ls~N-~l~~l~ 534 (635)
T 4g8a_A 472 EVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLSP--------------TAFNSLSSLQVLNMSHN-NFFSLD 534 (635)
T ss_dssp CEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEECT--------------TTTTTCTTCCEEECTTS-CCCBCC
T ss_pred hhhhhhhcccccccC-chhhhhccccCEEECCCCc-cCCcCh--------------HHHcCCCCCCEEECCCC-cCCCCC
Confidence 999999887666543 3455778999999999985 666642 23446789999999887 455554
Q ss_pred cCCCccceeCCCccEEEEeCCCCCceec-CCCCCC-CCeeEEEecCC
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCCNMKIFT-SGDLIT-PKRVDAWYSES 213 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~~L~~lp-~~~~~~-~~L~~l~i~~~ 213 (225)
... ...+++|++|+++++ +++.++ ..+..+ ++|+.|++.++
T Consensus 535 ~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 535 TFP---YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CGG---GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred hhH---HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 321 245899999999997 566654 445566 68999999843
No 98
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.63 E-value=4.8e-07 Score=79.00 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=71.9
Q ss_pred cccccccceEeccCccCccccC-CchHHhhcccCCEEEEecCccccc-ccccccCCCCCcccccccccccccccceeecC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLV-PSSVAKSLERLVTLRVSGCSAMTQ-VVASCDQGDSDVAGANLEEEILFSKLRYMTML 159 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~I~~C~~L~~-l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 159 (225)
...+++|+.|++++|. ++.+. .+.....+++|+.|+++++. +.. ++. .....+++|++|.+.
T Consensus 344 ~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~--------------~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 344 CGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK--------------GDCSWTKSLLSLNMS 407 (520)
T ss_dssp CCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG--------------CSCCCCTTCCEEECC
T ss_pred hccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCccccc--------------chhccCccCCEEECc
Confidence 3456677777777763 33321 12334567777777777765 332 321 123356889999988
Q ss_pred cCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 160 DLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 160 ~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
++.--..+.... .++|++|++++| +++.+|.....+++|+.+++.++..
T Consensus 408 ~N~l~~~~~~~l------~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 408 SNILTDTIFRCL------PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp SSCCCGGGGGSC------CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCcchhhhh------cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcC
Confidence 875333222211 279999999998 7888998777899999999987654
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.63 E-value=7.8e-08 Score=79.39 Aligned_cols=188 Identities=10% Similarity=0.096 Sum_probs=98.9
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEecc--CCccc---cccccc---cccccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSN--EGCLE---SHVGVS---KLALIKISFG 86 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~--~~~~~---~~l~~~---~l~~~~~~l~ 86 (225)
+|...+++|+.|+++++... .++...+..+++|++|++ ++ .+..+... ..... -.+... .++.. .++
T Consensus 48 ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~ 123 (332)
T 2ft3_A 48 VPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPS 123 (332)
T ss_dssp CCSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSS--CCT
T ss_pred cCCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcc--ccc
Confidence 44445567888888775533 333333567888888888 44 45554221 11110 001111 11111 236
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccc--cccccC-CC---CCccc--ccccccccccccceeec
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV--VASCDQ-GD---SDVAG--ANLEEEILFSKLRYMTM 158 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l--~~~~~~-~~---~~~~~--~~~~~~~~~p~L~~L~l 158 (225)
+|++|+++++ .++.+. +.....+++|+.|++.++. +... ...... .. ...+. ........+++|++|.+
T Consensus 124 ~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l 200 (332)
T 2ft3_A 124 SLVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL 200 (332)
T ss_dssp TCCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBC
T ss_pred cCCEEECCCC-ccCccC-HhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEEC
Confidence 7888888776 344442 3345678888888888775 3221 110000 00 00000 00011122357777777
Q ss_pred CcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 159 LDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 159 ~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
.++ .++.+... ....+++|++|++.++ +++.++. .+..+++|+++++.++..
T Consensus 201 ~~n-~i~~~~~~---~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 201 DHN-KIQAIELE---DLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CSS-CCCCCCTT---SSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CCC-cCCccCHH---HhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcC
Confidence 665 23333211 1235789999999987 5666654 456789999999986644
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.57 E-value=4.7e-08 Score=72.72 Aligned_cols=130 Identities=16% Similarity=0.153 Sum_probs=91.7
Q ss_pred hccCCcEEEE-eccccc--eEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEec
Q 046905 45 VLHSLETLHL-SCTSYK--EIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSG 121 (225)
Q Consensus 45 ~l~~L~~L~l-~c~~l~--~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~ 121 (225)
..++|++|++ +|. +. .++. ....+++|+.|++.+|. ++.+ .....+++|+.|++++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~----------------~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~ 80 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEG----------------LTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSE 80 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSS----------------CCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEES
T ss_pred CcccCCEEECCCCC-CChhhHHH----------------HHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcC
Confidence 3578999999 664 43 3322 23458999999999995 6655 3456799999999999
Q ss_pred CcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC----
Q 046905 122 CSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS---- 197 (225)
Q Consensus 122 C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~---- 197 (225)
|. +...+. .....+++|++|.+.++ .++.+.... ....+++|++|++.++ .+..+|.
T Consensus 81 N~-l~~~~~--------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~ 141 (168)
T 2ell_A 81 NR-IFGGLD--------------MLAEKLPNLTHLNLSGN-KLKDISTLE--PLKKLECLKSLDLFNC-EVTNLNDYRES 141 (168)
T ss_dssp CC-CCSCCC--------------HHHHHCTTCCEEECBSS-SCCSSGGGG--GGSSCSCCCEEECCSS-GGGTSTTHHHH
T ss_pred Cc-CchHHH--------------HHHhhCCCCCEEeccCC-ccCcchhHH--HHhcCCCCCEEEeeCC-cCcchHHHHHH
Confidence 86 444211 22335899999999988 455543211 2346899999999998 5666665
Q ss_pred CCCCCCCeeEEEecCCc
Q 046905 198 GDLITPKRVDAWYSESA 214 (225)
Q Consensus 198 ~~~~~~~L~~l~i~~~~ 214 (225)
.+..+++|+++++.++.
T Consensus 142 ~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHTTCSSCCEETTEETT
T ss_pred HHHhCccCcEecCCCCC
Confidence 45678999999987543
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.57 E-value=6.6e-07 Score=80.32 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=23.5
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEe
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIF 63 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~ 63 (225)
+|...+++|+.|+++++. +..+|. .+++|++|+++...+..++
T Consensus 55 lp~~l~~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp 97 (622)
T 3g06_A 55 LPDCLPAHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLP 97 (622)
T ss_dssp CCSCCCTTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCC
T ss_pred cChhhCCCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCC
Confidence 344344677777777654 334444 3577777777222344443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.55 E-value=5.5e-07 Score=80.01 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=84.3
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCC-cccccccc---cccccccccccccceE
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEG-CLESHVGV---SKLALIKISFGNLTHL 91 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~-~~~~~l~~---~~l~~~~~~l~~L~~L 91 (225)
+|...+++|+.|+++++.. ..+| ..+++|++|+++...+..++.... .....+.. ..++. .+++|+.|
T Consensus 74 lp~~l~~~L~~L~Ls~N~l-~~ip----~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 74 LPDNLPPQITVLEITQNAL-ISLP----ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPE---LPALLEYI 145 (571)
T ss_dssp CCSCCCTTCSEEECCSSCC-SCCC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred cCHhHcCCCCEEECcCCCC-cccc----cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCC---cCccccEE
Confidence 4444456677777766442 3455 235677777772224444433110 00000110 11111 35556666
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
+++++ .++.+ +. .+++|+.|+++++. +..++ . ..++|+.|.+.++ +++.++. .
T Consensus 146 ~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N~-L~~lp----------------~--l~~~L~~L~Ls~N-~L~~lp~-~ 198 (571)
T 3cvr_A 146 NADNN-QLTML--PE---LPTSLEVLSVRNNQ-LTFLP----------------E--LPESLEALDVSTN-LLESLPA-V 198 (571)
T ss_dssp ECCSS-CCSCC--CC---CCTTCCEEECCSSC-CSCCC----------------C--CCTTCCEEECCSS-CCSSCCC-C
T ss_pred eCCCC-ccCcC--CC---cCCCcCEEECCCCC-CCCcc----------------h--hhCCCCEEECcCC-CCCchhh-H
Confidence 66655 24433 11 34566666666553 33332 1 1178888888776 4554443 2
Q ss_pred CccceeCCCc-------cEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSL-------EDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L-------~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.++| +.|+++++ +++.+|.....+++|+.|++.++.+
T Consensus 199 ------~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 199 ------PVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ------C--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ------HHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 1255 99999887 7788888777789999999986644
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.55 E-value=1.8e-08 Score=73.55 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=63.8
Q ss_pred cccCccEEEEeeCCcc-ccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 20 LFGRLRRLEVVRDDVA-TGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~-~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
.+++|+.|+++++... ..+|.. +..+++|++|++ +| .+..+ . ....+++|+.|+++++.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~----------------~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-A----------------NLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-T----------------TCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-h----------------hhhcCCCCCEEECCCCc
Confidence 3567888888876543 245542 466788888888 44 44443 1 12236788888888773
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
+... .+.....+++|+.|+++++. +..++.. .....+++|++|.+.++
T Consensus 76 -i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~-------------~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 76 -VSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTI-------------EPLKKLENLKSLDLFNC 123 (149)
T ss_dssp -CCSC-THHHHHHCTTCCEEECTTSC-CCSHHHH-------------GGGGGCTTCCEEECTTC
T ss_pred -ccch-HHHHhhhCCCCCEEECCCCc-CCChHHH-------------HHHhhCCCCCEEeCcCC
Confidence 4442 14455567888888887775 4433210 12335566666666665
No 104
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.54 E-value=1e-06 Score=79.11 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=27.0
Q ss_pred CCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+++|+.|++++| +++.+|..+..+++|+.+++.++.+
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred cccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 567788887776 6667777667778888888876543
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.53 E-value=2.4e-08 Score=88.45 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=21.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
.+++|++|+++++..........+..+++|++|++
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 47788999998765222222223456777777776
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.52 E-value=9.7e-07 Score=68.74 Aligned_cols=140 Identities=20% Similarity=0.239 Sum_probs=97.6
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|......++.|+++++......+...+..+++|++|+++...+..++.. .+..+++|+.|+++
T Consensus 25 ~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------------~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 25 KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---------------AFEGASGVNEILLT 89 (220)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---------------TTTTCTTCCEEECC
T ss_pred cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---------------HhCCCCCCCEEECC
Confidence 356566678899999986644443444457899999999944456666431 23458899999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|++|+++++. +..++. .....+++|+.|.+.+. +++.+....
T Consensus 90 ~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~--- 148 (220)
T 2v70_A 90 SN-RLENVQ-HKMFKGLESLKTLMLRSNR-ITCVGN--------------DSFIGLSSVRLLSLYDN-QITTVAPGA--- 148 (220)
T ss_dssp SS-CCCCCC-GGGGTTCSSCCEEECTTSC-CCCBCT--------------TSSTTCTTCSEEECTTS-CCCCBCTTT---
T ss_pred CC-ccCccC-HhHhcCCcCCCEEECCCCc-CCeECH--------------hHcCCCccCCEEECCCC-cCCEECHHH---
Confidence 98 455553 4456789999999999886 555432 23446789999999886 455553322
Q ss_pred ceeCCCccEEEEeCCC
Q 046905 175 TFKFPSLEDLIVTGCC 190 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~ 190 (225)
...+++|++|++.+.+
T Consensus 149 ~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 149 FDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTCTTCCEEECCSCC
T ss_pred hcCCCCCCEEEecCcC
Confidence 2458899999998764
No 107
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.51 E-value=5.3e-07 Score=79.66 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=62.8
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---cccccccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLALIKISFGN 87 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~~~~~l~~ 87 (225)
+|...+++|++|+++++.. ..++...+..+++|++|+++...+..+.... +... ..+.. ..++.. .+++
T Consensus 46 ip~~~~~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 46 VPKDLPPRTKALSLSQNSI-SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp CCTTSCTTCCEEECCSSCC-CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCCCCCcCEEECCCCCc-cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 5555557888888887653 3444444677888888888333566553321 1111 01111 122222 5788
Q ss_pred cceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 88 LTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 88 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
|++|+++++. ++.+..+.....+++|++|++.++.
T Consensus 123 L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 123 LRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCEEECCCCC-ccccCchHhhcccCcccEEecCCCc
Confidence 8888888884 5554334566788888888888764
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.50 E-value=3e-07 Score=72.07 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=79.5
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
.+++|+.|+++++.. ..+|...+..+++|++|+++...+..++.. .+..+++|+.|++.++ ++
T Consensus 62 ~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~---------------~~~~l~~L~~L~Ls~N-~l 124 (229)
T 3e6j_A 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSA---------------VFDRLVHLKELFMCCN-KL 124 (229)
T ss_dssp TCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCSS-CC
T ss_pred CccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChh---------------HhCcchhhCeEeccCC-cc
Confidence 478999999998654 566665567899999999943466655431 1235889999999988 56
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
+.+ +.....+++|+.|++.++. +..++. .....+++|+.|.+.+.|
T Consensus 125 ~~l--p~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 125 TEL--PRGIERLTHLTHLALDQNQ-LKSIPH--------------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSC--CTTGGGCTTCSEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECTTSC
T ss_pred ccc--CcccccCCCCCEEECCCCc-CCccCH--------------HHHhCCCCCCEEEeeCCC
Confidence 655 4556889999999999874 665542 123457889999987754
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.45 E-value=1.8e-07 Score=78.35 Aligned_cols=126 Identities=11% Similarity=0.127 Sum_probs=79.4
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccccccccccccccccc
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKIS 84 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 84 (225)
++++..+..+.+. ..+++|+.|+++++.. ..++...+..+++|++|+++...+..++.. .+..
T Consensus 48 ~N~l~~l~~~~~~-~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------~~~~ 110 (361)
T 2xot_A 48 HNNLSRLRAEWTP-TRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHTLDEF---------------LFSD 110 (361)
T ss_dssp SSCCCEECTTSSS-SCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTT---------------TTTT
T ss_pred CCCCCccChhhhh-hcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCcCCcCCHH---------------HhCC
Confidence 3445554444443 1478999999997654 445544467899999999944557766441 2334
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
+++|+.|+++++ .+..+. +.....+++|+.|++.++. +..++.... .....+++|+.|.+.+.
T Consensus 111 l~~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~-----------~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 111 LQALEVLLLYNN-HIVVVD-RNAFEDMAQLQKLYLSQNQ-ISRFPVELI-----------KDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCSCCGGGT-----------C----CTTCCEEECCSS
T ss_pred CcCCCEEECCCC-cccEEC-HHHhCCcccCCEEECCCCc-CCeeCHHHh-----------cCcccCCcCCEEECCCC
Confidence 788899999887 355442 3455678889999888874 555542110 01135677888877764
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.45 E-value=5.6e-07 Score=77.78 Aligned_cols=112 Identities=16% Similarity=0.017 Sum_probs=54.7
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC-CCCCccc--c-cccccccccccceeecCcC
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-GDSDVAG--A-NLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-~~~~~~~--~-~~~~~~~~p~L~~L~l~~~ 161 (225)
++|++|+++++ .++.+ + ....+++|+.|++.+|. +..++..... ...+.++ . .-.....+++|++|.+.++
T Consensus 173 ~~L~~L~L~~n-~l~~l--~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 173 PSLEFIAAGNN-QLEEL--P-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSS-CCSSC--C-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred ccccEEECcCC-cCCcC--c-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 46667776666 34443 2 24566667777766664 3332211100 0000000 0 0012335667777777664
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
.++.++. .+++|++|++.+| +++.+|.. +++|++++++++.
T Consensus 248 -~l~~l~~-------~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 248 -LLKTLPD-------LPPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSENI 288 (454)
T ss_dssp -CCSSCCS-------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred -cCCcccc-------cccccCEEECCCC-cccccCcc---cCcCCEEECcCCc
Confidence 2333321 2467777777776 45555542 3566666666543
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.44 E-value=6e-08 Score=70.66 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=87.0
Q ss_pred hccCCcEEEE-eccccc--eEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEec
Q 046905 45 VLHSLETLHL-SCTSYK--EIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSG 121 (225)
Q Consensus 45 ~l~~L~~L~l-~c~~l~--~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~ 121 (225)
..++|++|++ +|. +. .++. ....+++|+.|++++| .++.+ .....+++|+.|++++
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~----------------~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~ 73 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEG----------------LTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSD 73 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCS----------------CCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCS
T ss_pred CCccCeEEEccCCc-CChhHHHH----------------HHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCC
Confidence 3578999999 653 33 3322 2345889999999998 56655 3456789999999998
Q ss_pred Cccccc-ccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC---
Q 046905 122 CSAMTQ-VVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS--- 197 (225)
Q Consensus 122 C~~L~~-l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~--- 197 (225)
+. +.. ++ .....+++|++|.+.++. ++.+.... ....+++|++|++++| .++.+|.
T Consensus 74 n~-i~~~~~---------------~~~~~l~~L~~L~ls~N~-i~~~~~~~--~~~~l~~L~~L~l~~N-~l~~~~~~~~ 133 (149)
T 2je0_A 74 NR-VSGGLE---------------VLAEKCPNLTHLNLSGNK-IKDLSTIE--PLKKLENLKSLDLFNC-EVTNLNDYRE 133 (149)
T ss_dssp SC-CCSCTH---------------HHHHHCTTCCEEECTTSC-CCSHHHHG--GGGGCTTCCEEECTTC-GGGGSTTHHH
T ss_pred Cc-ccchHH---------------HHhhhCCCCCEEECCCCc-CCChHHHH--HHhhCCCCCEEeCcCC-cccchHHHHH
Confidence 86 443 22 223358899999998875 44432101 2346899999999998 5676665
Q ss_pred -CCCCCCCeeEEEec
Q 046905 198 -GDLITPKRVDAWYS 211 (225)
Q Consensus 198 -~~~~~~~L~~l~i~ 211 (225)
....+++|+.+++.
T Consensus 134 ~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 134 NVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEETTB
T ss_pred HHHHHCCCcccccCC
Confidence 34568899988764
No 112
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.2e-07 Score=71.49 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=59.4
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCccccccccccc----ccccceeecCcCC
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEIL----FSKLRYMTMLDLE 162 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~----~p~L~~L~l~~~~ 162 (225)
+|+.|++++|. +++.... .+..+++|++|++++|..+..-.- ..... .++|++|.|.+|+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL--------------~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCL--------------ERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHH--------------HHHHTCHHHHHHCCEEEEESCT
T ss_pred eEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHH--------------HHHHhcccccCCCCEEEcCCCC
Confidence 68888888886 6665432 235788888888888886543110 11111 2578888888888
Q ss_pred CcceeecCCCccceeCCCccEEEEeCCCCCce
Q 046905 163 NLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKI 194 (225)
Q Consensus 163 ~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~ 194 (225)
+++.-.... ...+++|++|+|++|++++.
T Consensus 126 ~ITD~Gl~~---L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 126 NVTDKGIIA---LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCHHHHHH---GGGCTTCCEEEEESCTTCCC
T ss_pred cCCHHHHHH---HhcCCCCCEEECCCCCCCCc
Confidence 877644321 23578899999999988774
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.40 E-value=2.1e-07 Score=82.40 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=32.3
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC--CCCCCCCeeEEEec
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS--GDLITPKRVDAWYS 211 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~--~~~~~~~L~~l~i~ 211 (225)
.+++|++|+|.+|+ +..-.... ....+++|++|++++|. ++.... -...+|.++...+.
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~--~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAA--AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHH--HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred cCcccCeeeccCCC-CcHHHHHH--HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 46778888888887 43211110 11347888888888886 442110 01245655554443
No 114
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=2.1e-07 Score=70.13 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=17.8
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCccc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAM 125 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L 125 (225)
+|++|+|++|.++++-.. ..+..+++|++|+|++|+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTC
T ss_pred CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCC
Confidence 455555555555544321 11234455555555555543
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.38 E-value=8.3e-07 Score=66.47 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=43.4
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCc
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSC 96 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C 96 (225)
|...+++|+.|+++++.. ..++...+..+++|++|+++...+..++.. ....+++|+.|+++++
T Consensus 23 p~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 23 PTGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDG---------------VFDKLTKLTILYLHEN 86 (177)
T ss_dssp CTTCCTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCSS
T ss_pred CCCCCCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChh---------------HccCCCccCEEECCCC
Confidence 334445666666665432 334433345566666666622234433221 1123556666666665
Q ss_pred cCccccCCchHHhhcccCCEEEEecC
Q 046905 97 KKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 97 ~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
.++.+. +.....+++|+.|++.++
T Consensus 87 -~l~~~~-~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 87 -KLQSLP-NGVFDKLTQLKELALDTN 110 (177)
T ss_dssp -CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred -CccccC-HHHhhCCcccCEEECcCC
Confidence 344332 222345566666666655
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.36 E-value=5.8e-07 Score=67.39 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=86.2
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
...+|+.|+++++... .++. .....++|++|+++-..+..+.. ...+++|+.|+++++ .+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~-----------------l~~l~~L~~L~Ls~N-~l 76 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDG-----------------FPLLRRLKTLLVNNN-RI 76 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECC-----------------CCCCSSCCEEECCSS-CC
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccc-----------------cccCCCCCEEECCCC-cc
Confidence 4678999999986543 4453 22334499999993335665521 234789999999988 46
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCC
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFP 179 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p 179 (225)
+.+. +.....+++|+.|+++++. +..++.. .....+++|+.|.+.+++- ..++.........+|
T Consensus 77 ~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~-------------~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 77 CRIG-EGLDQALPDLTELILTNNS-LVELGDL-------------DPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVP 140 (176)
T ss_dssp CEEC-SCHHHHCTTCCEEECCSCC-CCCGGGG-------------GGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCT
T ss_pred cccC-cchhhcCCCCCEEECCCCc-CCcchhh-------------HhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCC
Confidence 6653 3445789999999999885 5554321 1344678888888888753 222211000124578
Q ss_pred CccEEEEeCCCC
Q 046905 180 SLEDLIVTGCCN 191 (225)
Q Consensus 180 ~L~~L~I~~C~~ 191 (225)
+|+.|++.++..
T Consensus 141 ~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 141 QVRVLDFQKVKL 152 (176)
T ss_dssp TCSEETTEECCH
T ss_pred ccceeCCCcCCH
Confidence 888888877653
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.33 E-value=1.8e-06 Score=65.90 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=75.9
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+.+++|+.|++.++. +..+|. .+..+++|++|+++-..+..+.. ..+..+++|+.|+++
T Consensus 24 ~ip~~~~~~l~~L~L~~n~-i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~---------------~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 24 VLPKGIPRDVTELYLDGNQ-FTLVPK-ELSNYKHLTLIDLSNNRISTLSN---------------QSFSNMTQLLTLILS 86 (193)
T ss_dssp SCCSCCCTTCCEEECCSSC-CCSCCG-GGGGCTTCCEEECCSSCCCCCCT---------------TTTTTCTTCCEEECC
T ss_pred cCCCCCCCCCCEEECCCCc-CchhHH-HhhcccCCCEEECCCCcCCEeCH---------------hHccCCCCCCEEECC
Confidence 3455566789999998754 346664 36788999999984445555432 123447889999998
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
++ .++.+. +.....+++|+.|++.++. +..++. .....+++|+.|.+.+.|
T Consensus 87 ~N-~l~~i~-~~~f~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 87 YN-RLRCIP-PRTFDGLKSLRLLSLHGND-ISVVPE--------------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SS-CCCBCC-TTTTTTCTTCCEEECCSSC-CCBCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred CC-ccCEeC-HHHhCCCCCCCEEECCCCC-CCeeCh--------------hhhhcCccccEEEeCCCC
Confidence 87 466553 3445678899999998875 555432 123356788888877653
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.32 E-value=1.1e-06 Score=66.94 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=70.4
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|...+.+|+.|+++++......+...+..+++|++|+++-..+..+.. ..+..+++|+.|+++
T Consensus 22 ~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---------------NAFEGASHIQELQLG 86 (192)
T ss_dssp SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT---------------TTTTTCTTCCEEECC
T ss_pred cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH---------------hHcCCcccCCEEECC
Confidence 45555556888888887554333332235678888888883334544422 123346788888888
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
++ .++.+. +.....+++|+.|+++++. +..++. .....+++|++|.+.+.+
T Consensus 87 ~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 EN-KIKEIS-NKMFLGLHQLKTLNLYDNQ-ISCVMP--------------GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SC-CCCEEC-SSSSTTCTTCCEEECCSSC-CCEECT--------------TSSTTCTTCCEEECTTCC
T ss_pred CC-cCCccC-HHHhcCCCCCCEEECCCCc-CCeeCH--------------HHhhcCCCCCEEEeCCCC
Confidence 77 455553 2334567888888888774 444321 223456778888776653
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=2.7e-08 Score=76.27 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=79.1
Q ss_pred CccEEEEee-CCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 23 RLRRLEVVR-DDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 23 ~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
+|+...+.+ ...+..+|.. +..+++|++|++ ++ .+..++ ....+++|+.|++.+| .++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-----------------~~~~l~~L~~L~l~~n-~l~ 83 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS-----------------SLSGMENLRILSLGRN-LIK 83 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC-----------------CHHHHTTCCEEEEEEE-EEC
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc-----------------ccccCCCCCEEECCCC-Ccc
Confidence 455555554 2233444443 567788888887 44 333332 1223677778887777 355
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS 180 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~ 180 (225)
.+ +.....+++|+.|++.++. +..++ ....+++|++|.+.++. ++.+.... ....+++
T Consensus 84 ~l--~~~~~~~~~L~~L~L~~N~-l~~l~----------------~~~~l~~L~~L~l~~N~-i~~~~~~~--~l~~l~~ 141 (198)
T 1ds9_A 84 KI--ENLDAVADTLEELWISYNQ-IASLS----------------GIEKLVNLRVLYMSNNK-ITNWGEID--KLAALDK 141 (198)
T ss_dssp SC--SSHHHHHHHCSEEEEEEEE-CCCHH----------------HHHHHHHSSEEEESEEE-CCCHHHHH--HHTTTTT
T ss_pred cc--cchhhcCCcCCEEECcCCc-CCcCC----------------ccccCCCCCEEECCCCc-CCchhHHH--HHhcCCC
Confidence 44 3445566778888887773 44432 23356777777776652 22221100 1124677
Q ss_pred ccEEEEeCCCCCceecCC----------CCCCCCeeEEE
Q 046905 181 LEDLIVTGCCNMKIFTSG----------DLITPKRVDAW 209 (225)
Q Consensus 181 L~~L~I~~C~~L~~lp~~----------~~~~~~L~~l~ 209 (225)
|++|++.+++--...|.. ...+++|+.++
T Consensus 142 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 888888777432222221 34566777665
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.31 E-value=4.6e-06 Score=63.42 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=59.3
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLT 165 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 165 (225)
++|+.|++.++ .++.+........+++|++|+++++. +..++. .....+++|++|.+.+.. ++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~Ls~N~-l~ 91 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP--------------NAFEGASHIQELQLGENK-IK 91 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT--------------TTTTTCTTCCEEECCSCC-CC
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH--------------hHcCCcccCCEEECCCCc-CC
Confidence 36666666666 34444222234566677777776654 333321 123345666666666542 34
Q ss_pred eeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCCce
Q 046905 166 SFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~~~ 215 (225)
.+.... ...+++|++|+++++ +++.+ |..+..+++|+++++.++.|
T Consensus 92 ~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 92 EISNKM---FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECSSS---STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ccCHHH---hcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 443321 124677777777776 44444 44456677777777765433
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.29 E-value=3.5e-06 Score=72.77 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=34.1
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
++|++|.+.++ .++.++. ...+++|++|++.+| +++.+|.. .++|+++++.++..
T Consensus 173 ~~L~~L~L~~n-~l~~l~~-----~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 173 PSLEFIAAGNN-QLEELPE-----LQNLPFLTAIYADNN-SLKKLPDL---PLSLESIVAGNNIL 227 (454)
T ss_dssp TTCCEEECCSS-CCSSCCC-----CTTCTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSSCC
T ss_pred ccccEEECcCC-cCCcCcc-----ccCCCCCCEEECCCC-cCCcCCCC---cCcccEEECcCCcC
Confidence 46777777765 3443331 135778888888877 45556542 35788888775543
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.29 E-value=2.2e-07 Score=78.27 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=19.4
Q ss_pred eCCCccEEEEeCCCCCce-----ecCCC--CCCCCeeEEEecCCc
Q 046905 177 KFPSLEDLIVTGCCNMKI-----FTSGD--LITPKRVDAWYSESA 214 (225)
Q Consensus 177 ~~p~L~~L~I~~C~~L~~-----lp~~~--~~~~~L~~l~i~~~~ 214 (225)
.+++|++|++++|. ++. +|..+ ...++|+.|++.++.
T Consensus 242 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 242 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 35666666666664 332 23322 225666666666543
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=4.5e-06 Score=62.41 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=15.1
Q ss_pred CCCccEEEEeCCCCCceecCCC-CCCCCeeEEEecC
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSE 212 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~ 212 (225)
+++|++|++.++ +++.+|... ..+++|+.+++.+
T Consensus 99 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcccCEEECcCC-cceEeCHHHhcCCcccCEEEecC
Confidence 444555555444 344444332 3344455555443
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.26 E-value=5.4e-06 Score=63.19 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=77.3
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+++|+.|++.+. .++.+ +.....+++|+.|+++++. +..++. .....+++|++|.+.+.. +
T Consensus 30 ~~~l~~L~L~~n-~i~~i--p~~~~~l~~L~~L~Ls~N~-i~~i~~--------------~~f~~l~~L~~L~Ls~N~-l 90 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLV--PKELSNYKHLTLIDLSNNR-ISTLSN--------------QSFSNMTQLLTLILSYNR-L 90 (193)
T ss_dssp CTTCCEEECCSS-CCCSC--CGGGGGCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSSC-C
T ss_pred CCCCCEEECCCC-cCchh--HHHhhcccCCCEEECCCCc-CCEeCH--------------hHccCCCCCCEEECCCCc-c
Confidence 568899999887 45655 3566788999999998875 554432 233467889999888763 5
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
+.+.... ...+++|++|++.++ +++.+|.. +..+++|+.+++.++.|
T Consensus 91 ~~i~~~~---f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRT---FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTT---TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHH---hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 5555432 245789999999986 67778764 46788999999986544
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.24 E-value=3.1e-07 Score=77.33 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=42.1
Q ss_pred ccccccceeecCcCCCccee-----ecCCCccceeCCCccEEEEeCCCCCce-----ecCCC-CCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSF-----CSGVVDYTFKFPSLEDLIVTGCCNMKI-----FTSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~-----~~~~~~~~~~~p~L~~L~I~~C~~L~~-----lp~~~-~~~~~L~~l~i~~~~~ 215 (225)
..+++|++|.+.++. +... .... ....+++|++|++++|. ++. +|... .++++|++|++.++..
T Consensus 241 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l--~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 241 KSWPNLRELGLNDCL-LSARGAAAVVDAF--SKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp GGCTTCCEEECTTCC-CCHHHHHHHHHHH--HTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred ccCCCcCEEECCCCC-CchhhHHHHHHHH--hhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 456778888887774 2221 1100 00127999999999984 554 77655 4579999999987654
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.22 E-value=1.5e-06 Score=79.35 Aligned_cols=109 Identities=16% Similarity=-0.007 Sum_probs=80.9
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
...+++|+.|+++++. +..+ +.....+++|+.|++.++. +..++ .....+++|+.|.|.++
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~lp---------------~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNI--SANIFKYDFLTRLYLNGNS-LTELP---------------AEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCC--CGGGGGCCSCSCCBCTTSC-CSCCC---------------GGGGGGTTCCEEECTTS
T ss_pred hccCCCCcEEECCCCC-CCCC--ChhhcCCCCCCEEEeeCCc-CcccC---------------hhhhCCCCCCEEeCcCC
Confidence 3457889999999885 5544 3445688999999998885 55554 23457889999999887
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
. |+.++.. ...+++|++|++.++ .++.+|..+..+++|+.|+++++.+
T Consensus 281 ~-l~~lp~~----~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 281 R-LTSLPAE----LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp C-CSSCCSS----GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred c-CCccChh----hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 5 5555443 256889999999988 6788898888889999999986644
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.18 E-value=3.6e-06 Score=63.00 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=70.4
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+++|+.|+++++ .++.+ .....+++|+.|+++++. +..++. .....+++|++|.+.++. +
T Consensus 41 ~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~-i 100 (176)
T 1a9n_A 41 LDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIGE--------------GLDQALPDLTELILTNNS-L 100 (176)
T ss_dssp TTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEECS--------------CHHHHCTTCCEEECCSCC-C
T ss_pred CCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccCc--------------chhhcCCCCCEEECCCCc-C
Confidence 348888888887 45554 234578888888888875 554431 112467889999888763 3
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCC----CCCCCCeeEEEecCC
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG----DLITPKRVDAWYSES 213 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~----~~~~~~L~~l~i~~~ 213 (225)
+.++... ....+++|++|++.+++ +..+|.. ...+++|+.+++.++
T Consensus 101 ~~~~~~~--~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 101 VELGDLD--PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCGGGGG--GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CcchhhH--hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 4443210 12458899999999874 5566653 457788888887644
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.16 E-value=6.7e-06 Score=73.07 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=80.0
Q ss_pred CccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccc---ccccc---cccccccccccccceEeccCc
Q 046905 23 RLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLE---SHVGV---SKLALIKISFGNLTHLVVFSC 96 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~---~~l~~---~~l~~~~~~l~~L~~L~i~~C 96 (225)
+|+.|+++++. +..+|... +++|++|+++...+..++ ..... ..+.. ..++. . ..+|+.|+++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l--~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-L--PASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-C--CTTCCEEECCSS
T ss_pred CccEEEeCCCC-CCccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-h--hcCCCEEECCCC
Confidence 88999998765 34477643 588999999444566554 11100 00100 01111 1 115555555554
Q ss_pred cCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccce
Q 046905 97 KKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTF 176 (225)
Q Consensus 97 ~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~ 176 (225)
.++.+ +. .+++|+.|+++++. +..++ . .+++|+.|.+.++. ++.++. .
T Consensus 131 -~l~~l--p~---~l~~L~~L~Ls~N~-l~~lp----------------~--~l~~L~~L~Ls~N~-L~~lp~-l----- 178 (571)
T 3cvr_A 131 -QLTML--PE---LPALLEYINADNNQ-LTMLP----------------E--LPTSLEVLSVRNNQ-LTFLPE-L----- 178 (571)
T ss_dssp -CCSCC--CC---CCTTCCEEECCSSC-CSCCC----------------C--CCTTCCEEECCSSC-CSCCCC-C-----
T ss_pred -cCCCC--CC---cCccccEEeCCCCc-cCcCC----------------C--cCCCcCEEECCCCC-CCCcch-h-----
Confidence 23332 11 34555555555543 32221 1 45778888887763 444433 2
Q ss_pred eCCCccEEEEeCCCCCceecCCCCCCCCe-------eEEEecCCce
Q 046905 177 KFPSLEDLIVTGCCNMKIFTSGDLITPKR-------VDAWYSESAC 215 (225)
Q Consensus 177 ~~p~L~~L~I~~C~~L~~lp~~~~~~~~L-------~~l~i~~~~~ 215 (225)
.++|+.|+++++ +++.+|. +.. +| +.|++.++..
T Consensus 179 -~~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 179 -PESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp -CTTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCC
T ss_pred -hCCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcc
Confidence 178999999887 6777876 332 66 8888876544
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.14 E-value=2.3e-06 Score=78.12 Aligned_cols=109 Identities=22% Similarity=0.112 Sum_probs=71.2
Q ss_pred HHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 43 LEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 43 ~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
+..+++|++|+++...+..++. ....+++|++|+++++ .++.+ +..+..+++|+.|+++++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~----------------~~~~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISA----------------NIFKYDFLTRLYLNGN-SLTEL--PAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCG----------------GGGGCCSCSCCBCTTS-CCSCC--CGGGGGGTTCCEEECTTS
T ss_pred hccCCCCcEEECCCCCCCCCCh----------------hhcCCCCCCEEEeeCC-cCccc--ChhhhCCCCCCEEeCcCC
Confidence 4556777777772223333322 2335788889998888 56544 455678888999999888
Q ss_pred cccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCC
Q 046905 123 SAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCN 191 (225)
Q Consensus 123 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~ 191 (225)
. +..++ .....+++|++|.|.++ .++.++... ..+++|++|++.+++-
T Consensus 281 ~-l~~lp---------------~~~~~l~~L~~L~L~~N-~l~~lp~~~----~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 281 R-LTSLP---------------AELGSCFQLKYFYFFDN-MVTTLPWEF----GNLCNLQFLGVEGNPL 328 (727)
T ss_dssp C-CSSCC---------------SSGGGGTTCSEEECCSS-CCCCCCSST----TSCTTCCCEECTTSCC
T ss_pred c-CCccC---------------hhhcCCCCCCEEECCCC-CCCccChhh----hcCCCccEEeCCCCcc
Confidence 6 55554 23456788888888877 456565432 4578888888888753
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=5.1e-06 Score=73.76 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=75.8
Q ss_pred cCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccc
Q 046905 47 HSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMT 126 (225)
Q Consensus 47 ~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~ 126 (225)
..|++|+++...+..++. ...+++|+.|+++++ .++.+ |..+..+++|+.|+++++. +.
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-----------------~~~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~Ls~N~-l~ 499 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-----------------LEQLLLVTHLDLSHN-RLRAL--PPALAALRCLEVLQASDNA-LE 499 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-----------------GGGGTTCCEEECCSS-CCCCC--CGGGGGCTTCCEEECCSSC-CC
T ss_pred cCceEEEecCCCCCCCcC-----------------ccccccCcEeecCcc-ccccc--chhhhcCCCCCEEECCCCC-CC
Confidence 367788883335554432 234778888888887 46644 4566778888888888774 54
Q ss_pred cccccccCCCCCcccccccccccccccceeecCcCCCcceee-cCCCccceeCCCccEEEEeCCCCCceecCCC----CC
Q 046905 127 QVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC-SGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD----LI 201 (225)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~-~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~----~~ 201 (225)
.++ ....+++|+.|.+.++ +++.+. .. ....+++|+.|+++++ .++.+|... ..
T Consensus 500 ~lp----------------~l~~l~~L~~L~Ls~N-~l~~~~~p~---~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~ 558 (567)
T 1dce_A 500 NVD----------------GVANLPRLQELLLCNN-RLQQSAAIQ---PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEM 558 (567)
T ss_dssp CCG----------------GGTTCSSCCEEECCSS-CCCSSSTTG---GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHH
T ss_pred CCc----------------ccCCCCCCcEEECCCC-CCCCCCCcH---HHhcCCCCCEEEecCC-cCCCCccHHHHHHHH
Confidence 443 2345778888888775 344442 11 2245788888888886 456555433 23
Q ss_pred CCCeeEEE
Q 046905 202 TPKRVDAW 209 (225)
Q Consensus 202 ~~~L~~l~ 209 (225)
+|+|+.|.
T Consensus 559 lp~L~~L~ 566 (567)
T 1dce_A 559 LPSVSSIL 566 (567)
T ss_dssp CTTCSEEE
T ss_pred CcccCccC
Confidence 67777764
No 131
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=1.3e-05 Score=67.15 Aligned_cols=166 Identities=15% Similarity=0.030 Sum_probs=79.3
Q ss_pred cccCccEEEEeeCCc-------cc-cCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccce
Q 046905 20 LFGRLRRLEVVRDDV-------AT-GFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTH 90 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~-------~~-~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~ 90 (225)
.|++|+.|.|.+... .. .-...++..+|+|+.|.| +|..+. +. + ...++|++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~----------------~--~~~~~L~~ 197 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IG----------------K--KPRPNLKS 197 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CC----------------S--CBCTTCSE
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ec----------------c--ccCCCCcE
Confidence 477888888854211 00 012233567788888888 652221 11 1 12667888
Q ss_pred EeccCccCccccCCchHH-hhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeec
Q 046905 91 LVVFSCKKLMNLVPSSVA-KSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCS 169 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~-~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~ 169 (225)
|+|..|. +..-...... ..+|+|++|.+..+.+.. ....... ... .......||+|++|.+.+|.--.....
T Consensus 198 L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~--~~~~~~~--~l~--~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 198 LEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDY--GFDGDMN--VFR--PLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp EEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGG--TCCSCGG--GTG--GGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred EEEecCC-CChHHHHHHHHccCCCCcEEEEecccccc--ccchhHH--HHH--HHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 8887663 3221101111 257888888876432210 0000000 000 001113477888888776643211100
Q ss_pred CCCccceeCCCccEEEEeCCCCCce-----ecCCCCCCCCeeEEEecCC
Q 046905 170 GVVDYTFKFPSLEDLIVTGCCNMKI-----FTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 170 ~~~~~~~~~p~L~~L~I~~C~~L~~-----lp~~~~~~~~L~~l~i~~~ 213 (225)
.. .....+|.|++|+++.+ .+.. ++.++.++++|+.|++..+
T Consensus 271 ~l-a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 271 MF-LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HH-HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HH-HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 00 00023677777777554 4543 3433345567777777544
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.97 E-value=5.3e-06 Score=69.26 Aligned_cols=180 Identities=11% Similarity=-0.040 Sum_probs=90.7
Q ss_pred cCccEEEEeeCCccccCCHhH---HHhc-cCCcEEEE-eccccceEeccC----------Cccccccccccc--------
Q 046905 22 GRLRRLEVVRDDVATGFPVGL---LEVL-HSLETLHL-SCTSYKEIFSNE----------GCLESHVGVSKL-------- 78 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~---~~~l-~~L~~L~l-~c~~l~~~~~~~----------~~~~~~l~~~~l-------- 78 (225)
++|++|+++++......+..+ +..+ ++|++|++ +|. +....... ......+....+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 899999999876443333322 2223 79999999 553 44332100 000000110000
Q ss_pred cccccccc-ccceEeccCccCccccCCc---hHHhhc-ccCCEEEEecCcccccccccccCCCCCccccccccccc-ccc
Q 046905 79 ALIKISFG-NLTHLVVFSCKKLMNLVPS---SVAKSL-ERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEIL-FSK 152 (225)
Q Consensus 79 ~~~~~~l~-~L~~L~i~~C~~L~~l~~~---~~~~~l-~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~-~p~ 152 (225)
......++ +|+.|++++| .+...... .....+ ++|++|++++|. +....... -...... .++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~----------l~~~l~~~~~~ 226 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE----------LAYIFSSIPNH 226 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH----------HHHHHHHSCTT
T ss_pred HHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH----------HHHHHhcCCCC
Confidence 01111233 6777777666 34433211 112233 367777776664 22210000 0011122 358
Q ss_pred cceeecCcCCCcceeecCC-CccceeCCCccEEEEeCCC-------CCceecCCCCCCCCeeEEEecCCce
Q 046905 153 LRYMTMLDLENLTSFCSGV-VDYTFKFPSLEDLIVTGCC-------NMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 153 L~~L~l~~~~~L~~~~~~~-~~~~~~~p~L~~L~I~~C~-------~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
|++|.+.++. +....... ......+++|++|++++|. .+..++.....+++|+.++++++..
T Consensus 227 L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 227 VVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred ceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 9999998863 33221100 0011347899999999985 2444555666788899999886654
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=1.6e-05 Score=70.51 Aligned_cols=126 Identities=19% Similarity=0.174 Sum_probs=85.8
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
.+|+.|+++++. +..+|. ++.+++|++|+++...+..++. ....+++|+.|+++++ .++.
T Consensus 441 ~~L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~----------------~~~~l~~L~~L~Ls~N-~l~~ 500 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLRALPP----------------ALAALRCLEVLQASDN-ALEN 500 (567)
T ss_dssp TTCSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCCCCCG----------------GGGGCTTCCEEECCSS-CCCC
T ss_pred cCceEEEecCCC-CCCCcC--ccccccCcEeecCcccccccch----------------hhhcCCCCCEEECCCC-CCCC
Confidence 368999998764 445675 6889999999994345555543 2345889999999988 5665
Q ss_pred cCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCc
Q 046905 102 LVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSL 181 (225)
Q Consensus 102 l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L 181 (225)
+ + .+..+++|+.|+++++. +..++. +.....+++|+.|.+.+.+ ++.++.........+|+|
T Consensus 501 l--p-~l~~l~~L~~L~Ls~N~-l~~~~~-------------p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 501 V--D-GVANLPRLQELLLCNNR-LQQSAA-------------IQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp C--G-GGTTCSSCCEEECCSSC-CCSSST-------------TGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTC
T ss_pred C--c-ccCCCCCCcEEECCCCC-CCCCCC-------------cHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCccc
Confidence 4 3 56789999999998875 555420 1345578899999998874 333332221233458888
Q ss_pred cEEE
Q 046905 182 EDLI 185 (225)
Q Consensus 182 ~~L~ 185 (225)
+.|+
T Consensus 563 ~~L~ 566 (567)
T 1dce_A 563 SSIL 566 (567)
T ss_dssp SEEE
T ss_pred CccC
Confidence 8875
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=5.6e-05 Score=62.11 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=28.6
Q ss_pred ccccceeecCcCCCcceeecCCCccceeCCCcc-EEEEeCCCCCceecC-CCCCCCCeeEEEec
Q 046905 150 FSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLE-DLIVTGCCNMKIFTS-GDLITPKRVDAWYS 211 (225)
Q Consensus 150 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~-~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~ 211 (225)
+++|+.+.+.+ +++.+..+. +..+++|+ .+.+.+ +++.++. .+...++|+.|.+.
T Consensus 249 ~~~L~~l~l~~--ni~~I~~~a---F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 249 KKYLLKIKLPH--NLKTIGQRV---FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CTTCCEEECCT--TCCEECTTT---TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred CCCCCEEECCc--ccceehHHH---hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 34555555544 244444332 23455666 666655 5555543 23455666666664
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.92 E-value=6.3e-07 Score=76.89 Aligned_cols=116 Identities=13% Similarity=0.014 Sum_probs=61.0
Q ss_pred ccceEeccCccCccccC---CchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 87 NLTHLVVFSCKKLMNLV---PSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~---~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
+|++|++++|. +.... .+.....+++|++|++++|. +.......-. ..-....++|++|.+.+| .
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~---------~~l~~~~~~L~~L~L~~n-~ 153 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLC---------EGLLDPQCRLEKLQLEYC-S 153 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHH---------HHHTSTTCCCCEEECTTS-C
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHH---------HHHhcCCCcceEEECCCC-C
Confidence 67888887773 44211 12334567778888887775 3221100000 000112457888888887 2
Q ss_pred cceeecCC-CccceeCCCccEEEEeCCCCCcee-----cCCC-CCCCCeeEEEecCCce
Q 046905 164 LTSFCSGV-VDYTFKFPSLEDLIVTGCCNMKIF-----TSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 164 L~~~~~~~-~~~~~~~p~L~~L~I~~C~~L~~l-----p~~~-~~~~~L~~l~i~~~~~ 215 (225)
++...... ......+++|++|++++|. +... .... ...++|+.+++.++..
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 32211000 0011246899999999886 4421 1111 1356899999987644
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.90 E-value=9.4e-07 Score=75.80 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=20.6
Q ss_pred CccEEEEeeCCccc----cCCHhHHHhccCCcEEEE-ecc
Q 046905 23 RLRRLEVVRDDVAT----GFPVGLLEVLHSLETLHL-SCT 57 (225)
Q Consensus 23 ~L~~L~l~~~~~~~----~~p~~~~~~l~~L~~L~l-~c~ 57 (225)
+|++|+++++.... .++. .+..+++|++|++ ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSB
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCc
Confidence 68888887765332 1222 2456778888888 543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.87 E-value=1.9e-05 Score=59.15 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=52.5
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+..++|+.|+++++... .++...+..+++|++|+++-..+..++.. .+..+++|+.|+++
T Consensus 26 ~iP~~~~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~---------------~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 26 SVPAGIPTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTG---------------VFDKLTQLTQLDLN 89 (174)
T ss_dssp SCCSCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------TTTTCTTCCEEECC
T ss_pred ccCCCcCCCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChh---------------HhCCcchhhEEECC
Confidence 345555567777777765433 33333356677777777733355544331 12246777777777
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
++ .++.+. +.....+++|+.|++.+.+
T Consensus 90 ~N-~l~~l~-~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DN-HLKSIP-RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SS-CCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred CC-ccceeC-HHHhccccCCCEEEeCCCC
Confidence 66 455442 2335567777777777654
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.84 E-value=3.1e-06 Score=70.70 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=35.9
Q ss_pred ccceeecCcCCCcceeecCC-CccceeC-CCccEEEEeCCCCCce-----ecCCCCC-CCCeeEEEecCCce
Q 046905 152 KLRYMTMLDLENLTSFCSGV-VDYTFKF-PSLEDLIVTGCCNMKI-----FTSGDLI-TPKRVDAWYSESAC 215 (225)
Q Consensus 152 ~L~~L~l~~~~~L~~~~~~~-~~~~~~~-p~L~~L~I~~C~~L~~-----lp~~~~~-~~~L~~l~i~~~~~ 215 (225)
+|++|.+.++. ++...... ......+ ++|++|++++|. +.. ++..... .++|+.++++++..
T Consensus 168 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 168 NVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred cccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 78888888772 32221100 0001124 489999998884 554 4443333 35899999986644
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=7.9e-05 Score=61.21 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=65.0
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccc-eeecCcCCC
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLR-YMTMLDLEN 163 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~-~L~l~~~~~ 163 (225)
+++|+.|++.++ +++.+. ......+++|++|.+.+ +++.|.. .....+++|+ .+.+.+ +
T Consensus 225 ~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~--ni~~I~~--------------~aF~~~~~L~~~l~l~~--~ 284 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPH--NLKTIGQ--------------RVFSNCGRLAGTLELPA--S 284 (329)
T ss_dssp CTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCT--TCCEECT--------------TTTTTCTTCCEEEEECT--T
T ss_pred cCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCc--ccceehH--------------HHhhCChhccEEEEEcc--c
Confidence 456666666654 244442 23345566677766655 2444431 1233556788 888877 7
Q ss_pred cceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEe
Q 046905 164 LTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWY 210 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i 210 (225)
++.+..+. +..+++|+.+.+.+ .+++.++.. +...++|+.|+.
T Consensus 285 l~~I~~~a---F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGA---FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTT---TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhh---hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 88887653 45688999999865 478888763 467889998864
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.84 E-value=4e-06 Score=63.97 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=75.6
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|+.|+++++.. ..+| .+..+++|++|++ ++ .+..++. ....+++|+.|+++++
T Consensus 45 ~~l~~L~~L~ls~n~l-~~l~--~~~~l~~L~~L~l~~n-~l~~l~~----------------~~~~~~~L~~L~L~~N- 103 (198)
T 1ds9_A 45 STLKACKHLALSTNNI-EKIS--SLSGMENLRILSLGRN-LIKKIEN----------------LDAVADTLEELWISYN- 103 (198)
T ss_dssp HHTTTCSEEECSEEEE-SCCC--CHHHHTTCCEEEEEEE-EECSCSS----------------HHHHHHHCSEEEEEEE-
T ss_pred hcCCCCCEEECCCCCC-cccc--ccccCCCCCEEECCCC-Ccccccc----------------hhhcCCcCCEEECcCC-
Confidence 3588999999998653 4467 3788999999999 54 4444322 1233689999999998
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
.++.+ + ....+++|+.|++.++. +..++.. .....+++|++|.+.+++
T Consensus 104 ~l~~l--~-~~~~l~~L~~L~l~~N~-i~~~~~~-------------~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 104 QIASL--S-GIEKLVNLRVLYMSNNK-ITNWGEI-------------DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ECCCH--H-HHHHHHHSSEEEESEEE-CCCHHHH-------------HHHTTTTTCSEEEECSCH
T ss_pred cCCcC--C-ccccCCCCCEEECCCCc-CCchhHH-------------HHHhcCCCCCEEEecCCc
Confidence 56655 2 56789999999999885 4443210 134467899999998874
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.73 E-value=8.8e-05 Score=55.39 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=41.4
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLT 165 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 165 (225)
++|+.|+++++ .++.+. +.....+++|+.|+++++. +..++.. ....+++|+.|.+.+. +++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~~~--------------~~~~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSNK-LTAIPTG--------------VFDKLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTT--------------TTTTCTTCCEEECCSS-CCC
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCCC-CCccChh--------------HhCCcchhhEEECCCC-ccc
Confidence 56666666665 344432 2334556666666666653 4444311 1124556666666553 333
Q ss_pred eeecCCCccceeCCCccEEEEeCC
Q 046905 166 SFCSGVVDYTFKFPSLEDLIVTGC 189 (225)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~I~~C 189 (225)
.+..+. ...+++|++|++.+.
T Consensus 95 ~l~~~~---~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 95 SIPRGA---FDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCTTT---TTTCTTCSEEECCSS
T ss_pred eeCHHH---hccccCCCEEEeCCC
Confidence 333321 123566666666554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.72 E-value=4.7e-05 Score=56.65 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=51.9
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
+|...+++|+.|+++++.. ..++...+..+++|++|+++-..+..++.. .+..+++|+.|++++
T Consensus 24 ip~~~~~~l~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---------------~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 24 VPTGIPTTTQVLYLYDNQI-TKLEPGVFDRLTQLTRLDLDNNQLTVLPAG---------------VFDKLTQLTQLSLND 87 (170)
T ss_dssp CCSCCCTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCS
T ss_pred cCccCCCCCcEEEcCCCcC-CccChhhhcCcccCCEEECCCCCcCccChh---------------hccCCCCCCEEECCC
Confidence 4444456777777776543 333333356677777777733345544331 123467777777777
Q ss_pred ccCccccCCchHHhhcccCCEEEEecC
Q 046905 96 CKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 96 C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
. .++.+. +.....+++|+.|++.+.
T Consensus 88 N-~l~~~~-~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 N-QLKSIP-RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp S-CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred C-ccCEeC-HHHhcCCCCCCEEEeCCC
Confidence 6 455542 233556777777777764
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.66 E-value=0.00014 Score=60.04 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=44.9
Q ss_pred HhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEe
Q 046905 108 AKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVT 187 (225)
Q Consensus 108 ~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~ 187 (225)
+..+++|+.|++.++..+..++.. ....+++|+.|.|.+. +|+.+.... ...+++|++|+++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~--------------~~~~l~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR--------------DLRGLGELRNLTIVKS-GLRFVAPDA---FHFTPRLSRLNLS 88 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG--------------GSCSCCCCSEEECCSS-CCCEECTTG---GGSCSCCCEEECC
T ss_pred CCCCCCeeEEEccCCCCCCCcChh--------------HhccccCCCEEECCCC-ccceeCHHH---hcCCcCCCEEeCC
Confidence 445556666666554445544321 2234556666666655 455544321 2346666666666
Q ss_pred CCCCCceecCCCCCCCCeeEEEecCC
Q 046905 188 GCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 188 ~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
+. +|+.+|.......+|+.|.+.++
T Consensus 89 ~N-~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SS-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred CC-ccceeCHHHcccCCceEEEeeCC
Confidence 63 55666554322233666666543
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.57 E-value=0.00022 Score=52.91 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=15.4
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
++|+.|+++++ .++.+. +.....+++|+.|+++++
T Consensus 30 ~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCC
Confidence 44555555544 233321 222334455555555544
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.46 E-value=5.7e-05 Score=63.32 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=78.3
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc-
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK- 97 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~- 97 (225)
.+++|+.|.|+++.... ++. + .+++|++|++ .|. +..-. ... -....+|+|+.|+++.+.
T Consensus 170 ~~P~L~~L~L~g~~~l~-l~~--~-~~~~L~~L~L~~~~-l~~~~----l~~---------l~~~~lp~L~~L~L~~~~~ 231 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS-IGK--K-PRPNLKSLEIISGG-LPDSV----VED---------ILGSDLPNLEKLVLYVGVE 231 (362)
T ss_dssp TCTTCCEEEEECCBTCB-CCS--C-BCTTCSEEEEECSB-CCHHH----HHH---------HHHSBCTTCCEEEEECBCG
T ss_pred cCCCCcEEEEeCCCCce-ecc--c-cCCCCcEEEEecCC-CChHH----HHH---------HHHccCCCCcEEEEecccc
Confidence 57899999999863332 332 2 3789999999 553 32100 000 001248999999985321
Q ss_pred ------CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCccee----
Q 046905 98 ------KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSF---- 167 (225)
Q Consensus 98 ------~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~---- 167 (225)
.++.+........+|+|+.|.+.+|.-.......- .....+|+|++|.|+.+ .+...
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l------------a~a~~~~~L~~LdLs~n-~L~d~G~~~ 298 (362)
T 2ra8_A 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF------------LESDILPQLETMDISAG-VLTDEGARL 298 (362)
T ss_dssp GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH------------HHCSSGGGCSEEECCSS-CCBHHHHHH
T ss_pred ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH------------HhCccCCCCCEEECCCC-CCChHHHHH
Confidence 12222110111358999999999986321111000 11135789999999653 45432
Q ss_pred -ecCCCccceeCCCccEEEEeCCC
Q 046905 168 -CSGVVDYTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 168 -~~~~~~~~~~~p~L~~L~I~~C~ 190 (225)
..+ ...+++|++|++++|.
T Consensus 299 L~~~----L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 299 LLDH----VDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHTT----HHHHTTCSEEECCSBB
T ss_pred HHhh----cccCCcceEEECCCCc
Confidence 221 1357899999999884
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.38 E-value=0.0003 Score=57.97 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=14.1
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
.+|+.|++++.+.+..++...+..+++|++|++
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l 63 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEEC
Confidence 344555554322233333333344455555555
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.17 E-value=7.9e-06 Score=68.78 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=42.2
Q ss_pred cccCccEEEEeeCCccccCCHhHHHh-----ccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEec
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEV-----LHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVV 93 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~-----l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i 93 (225)
.+++|+.|+++++..... ....+.. .++|++|++ +|. +..... ......+++|+.|++
T Consensus 70 ~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~--------------~~l~~~L~~L~~L~L 133 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQ-LDPAGL--------------RTLLPVFLRARKLGL 133 (372)
T ss_dssp HHTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCC-CCHHHH--------------HHTHHHHHTEEEEEC
T ss_pred HHhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCC-CCHHHH--------------HHHHHHHHhccHhhc
Confidence 356788888887653221 1111222 258888888 553 221100 011122456777777
Q ss_pred cCccCccccCCchHH----hhcccCCEEEEecCc
Q 046905 94 FSCKKLMNLVPSSVA----KSLERLVTLRVSGCS 123 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~----~~l~~L~~L~I~~C~ 123 (225)
++| .+......... ...++|++|++++|.
T Consensus 134 s~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 134 QLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp CSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 766 34332111111 123567777777664
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.54 E-value=0.00021 Score=60.07 Aligned_cols=144 Identities=13% Similarity=-0.064 Sum_probs=81.3
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccccccccccccccc-ccccccceEeccCccCc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIK-ISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~-~~l~~L~~L~i~~C~~L 99 (225)
++|+.|+++++.........+...+++|++|++ +| .+...... .+.... ...++|+.|++++| .+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~-----------~L~~~L~~~~~~L~~L~Ls~n-~l 167 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACK-----------DLRDLLLHDQCQITTLRLSNN-PL 167 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHH-----------HHHHHHHSTTCCCCEEECCSS-CC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHH-----------HHHHHHHhcCCccceeeCCCC-CC
Confidence 689999999876433222223456789999999 65 33321100 000000 12578999999999 45
Q ss_pred cccCC---chHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC-Cccc
Q 046905 100 MNLVP---SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV-VDYT 175 (225)
Q Consensus 100 ~~l~~---~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~-~~~~ 175 (225)
..... ...+...++|++|++++|. +.......- .......++|+.|.+.++. +....... ....
T Consensus 168 ~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L----------~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L 235 (372)
T 3un9_A 168 TAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELL----------AAQLDRNRQLQELNVAYNG-AGDTAALALARAA 235 (372)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHH----------HHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHH----------HHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHH
Confidence 44211 2233568899999999986 432110000 0122345689999998873 32211100 0001
Q ss_pred eeCCCccEEEEeCCC
Q 046905 176 FKFPSLEDLIVTGCC 190 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~ 190 (225)
...++|++|++.+++
T Consensus 236 ~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 236 REHPSLELLHLYFNE 250 (372)
T ss_dssp HHCSSCCEEECTTSS
T ss_pred HhCCCCCEEeccCCC
Confidence 235899999999984
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.43 E-value=0.021 Score=48.25 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=23.5
Q ss_pred eeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecC
Q 046905 176 FKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSE 212 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~ 212 (225)
..+++|+.+.+. ..++.++.. +....+|+.+.+..
T Consensus 297 ~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 297 EGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECT
T ss_pred hCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECc
Confidence 356777777776 357777653 35568888888853
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.42 E-value=0.029 Score=47.41 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=31.6
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCC----CceecC-CCCCCCCeeEEEecC
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCN----MKIFTS-GDLITPKRVDAWYSE 212 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~----L~~lp~-~~~~~~~L~~l~i~~ 212 (225)
.+|+.+.+. .+++.+.... +..+++|+.+.+.+... ++.++. .+...++|+.+.+.+
T Consensus 248 ~~L~~i~lp--~~i~~I~~~a---F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 248 SGITTVKLP--NGVTNIASRA---FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCCSEEEEE--TTCCEECTTT---TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCccEEEeC--CCccEEChhH---hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 355666552 2355554432 34567788888765321 223443 335667888887753
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.35 E-value=0.054 Score=43.17 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=35.1
Q ss_pred HhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcc--cCCEEEEec
Q 046905 44 EVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLE--RLVTLRVSG 121 (225)
Q Consensus 44 ~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~--~L~~L~I~~ 121 (225)
.++++|++|+++-..+..+.... .....+++|+.|++++. .++.+. .+..+. +|++|++.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~-------------~~~~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS-------------SIVQKAPNLKILNLSGN-ELKSER---ELDKIKGLKLEELWLDG 229 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT-------------THHHHSTTCCEEECTTS-CCCSGG---GGGGGTTSCCSEEECTT
T ss_pred hhCCCCCEEECCCCCCCCCccch-------------hHHhhCCCCCEEECCCC-ccCCch---hhhhcccCCcceEEccC
Confidence 45777777777444454442211 11234777778877765 344431 122333 777887777
Q ss_pred Cc
Q 046905 122 CS 123 (225)
Q Consensus 122 C~ 123 (225)
.+
T Consensus 230 Np 231 (267)
T 3rw6_A 230 NS 231 (267)
T ss_dssp ST
T ss_pred Cc
Confidence 66
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.29 E-value=0.04 Score=43.94 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=52.9
Q ss_pred cccccceEeccCccCccccCC-chHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 84 SFGNLTHLVVFSCKKLMNLVP-SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~-~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
.+++|+.|++++. ++..+.. +.....+++|+.|++++.. +..+... .....+ +|++|.+.+.|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l-------------~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSEREL-------------DKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGG-------------GGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCchhh-------------hhcccC-CcceEEccCCc
Confidence 4889999999987 4665421 2455689999999998764 4443110 111223 89999998887
Q ss_pred CcceeecCC---CccceeCCCccEEE
Q 046905 163 NLTSFCSGV---VDYTFKFPSLEDLI 185 (225)
Q Consensus 163 ~L~~~~~~~---~~~~~~~p~L~~L~ 185 (225)
--..+.... ......||+|+.|+
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CccccCcchhHHHHHHHHCcccCeEC
Confidence 443332100 00224588888775
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=90.42 E-value=0.025 Score=42.25 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=20.5
Q ss_pred ccccceEeccCccCccccCC---chHHhhcccCCEEEEecCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVP---SSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~I~~C~ 123 (225)
.++|++|++++|. +.+-.. ...+...++|++|++++|.
T Consensus 64 ~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 64 NTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp CCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4567777777763 332211 1122334667777777664
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.30 E-value=0.036 Score=41.37 Aligned_cols=114 Identities=10% Similarity=-0.026 Sum_probs=65.5
Q ss_pred cccccceEeccCccCccccCC---chHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVP---SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLD 160 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 160 (225)
..++|+.|++.+|..+..... ...+...++|++|++++|. +..-....- .......+.|++|.|.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l----------~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFAL----------AEMLKVNNTLKSLNVES 102 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHH----------HHHHHHCSSCCEEECCS
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHH----------HHHHHhCCCcCEEECcC
Confidence 467899999999855654321 1223446889999999986 321100000 01223446799999887
Q ss_pred CCCcce-----eecCCCccceeCCCccEEEE--eCCCCCce-----ecCCCCCCCCeeEEEecCCc
Q 046905 161 LENLTS-----FCSGVVDYTFKFPSLEDLIV--TGCCNMKI-----FTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 161 ~~~L~~-----~~~~~~~~~~~~p~L~~L~I--~~C~~L~~-----lp~~~~~~~~L~~l~i~~~~ 214 (225)
+. +.. +.. .....++|++|++ .++ .+.. +...+...++|+++++..+.
T Consensus 103 N~-i~~~g~~~l~~----~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 NF-ISGSGILALVE----ALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SC-CCHHHHHHHHH----GGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred Cc-CCHHHHHHHHH----HHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 63 211 111 1124578999999 555 4442 22222345789999887553
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.25 E-value=2.8 Score=34.65 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=19.0
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
..+|+.+.+... ...+.......+.+|+.+.+
T Consensus 229 ~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~ 260 (394)
T 4fs7_A 229 KTGVKNIIIPDS--FTELGKSVFYGCTDLESISI 260 (394)
T ss_dssp TCCCCEEEECTT--CCEECSSTTTTCSSCCEEEE
T ss_pred cCCCceEEECCC--ceecccccccccccceeEEc
Confidence 357888877642 12233333456778888877
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.24 E-value=8.5 Score=31.64 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=34.0
Q ss_pred ccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 150 FSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 150 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
..+|+.+.|.+ +++.+.... +..+.+|+.+.|-. .++.+.. .+....+|+.+.+.+...
T Consensus 310 c~~L~~i~lp~--~v~~I~~~a---F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 310 CISLKSIDIPE--GITQILDDA---FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTT---TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCcCEEEeCC--cccEehHhH---hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee
Confidence 35566666542 455555432 33567888888742 3555543 235567788888775433
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.51 E-value=1.9 Score=29.97 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=12.6
Q ss_pred CccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 23 RLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
+|+.|+|+++. +..+|...+..+++|++|++
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 62 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHL 62 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEEC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEe
Confidence 44444444322 23333333334444444443
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.01 E-value=3.3 Score=28.66 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=19.6
Q ss_pred CCccEEEEeCCCCCceecCCC-CCCCCeeEEEecCC
Q 046905 179 PSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSES 213 (225)
Q Consensus 179 p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~~ 213 (225)
++|++|++++- +|+.+|.+. ..+++|+.|++.++
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 35666666653 566666543 45566666666643
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=71.14 E-value=8.1 Score=31.78 Aligned_cols=104 Identities=10% Similarity=0.118 Sum_probs=58.5
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
..+|+.+.+.+. ...+....+.++++|+.+.+. ..+..+.. ..+..+.+|+.+.|.+ +++
T Consensus 264 c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~---------------~aF~~c~~L~~i~lp~--~v~ 323 (394)
T 4gt6_A 264 CAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPE---------------SVFAGCISLKSIDIPE--GIT 323 (394)
T ss_dssp CSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECT---------------TTTTTCTTCCEEECCT--TCC
T ss_pred cccccEEecccc--cceecCcccccccccccccCC-CcccccCc---------------eeecCCCCcCEEEeCC--ccc
Confidence 457788877542 223444445667888887772 23444433 1233467788888753 455
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
.+. ......+.+|+++.|-. +++.|.. ..-...++|+.+.+.+-
T Consensus 324 ~I~-~~aF~~C~~L~~i~ip~--sv~~I~~--------------~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 324 QIL-DDAFAGCEQLERIAIPS--SVTKIPE--------------SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEC-TTTTTTCTTCCEEEECT--TCCBCCG--------------GGGTTCTTCCEEEESSC
T ss_pred Eeh-HhHhhCCCCCCEEEECc--ccCEEhH--------------hHhhCCCCCCEEEECCc
Confidence 553 23445677888888753 3444431 22335567777776654
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=70.32 E-value=3.8 Score=33.80 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=8.3
Q ss_pred HHhccCCcEEEE
Q 046905 43 LEVLHSLETLHL 54 (225)
Q Consensus 43 ~~~l~~L~~L~l 54 (225)
...+.+|+.+.+
T Consensus 293 F~~~~~L~~i~l 304 (394)
T 4fs7_A 293 FYGCSSLTEVKL 304 (394)
T ss_dssp TTTCTTCCEEEE
T ss_pred cccccccccccc
Confidence 455677777776
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=67.98 E-value=17 Score=29.49 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=16.8
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
..+|+.+.+... +..+.......+.+|+.+.+
T Consensus 216 ~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~l 247 (379)
T 4h09_A 216 GKNLKKITITSG--VTTLGDGAFYGMKALDEIAI 247 (379)
T ss_dssp CSSCSEEECCTT--CCEECTTTTTTCSSCCEEEE
T ss_pred ccccceeeeccc--eeEEccccccCCccceEEEc
Confidence 446666666431 22333333445677777776
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=63.95 E-value=9 Score=31.16 Aligned_cols=111 Identities=18% Similarity=0.175 Sum_probs=60.2
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
..+|+.+.+... +..+.......+.+|+.+.+. .++..+.. ..+..+++|+.+.+.+. .++
T Consensus 239 ~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~-~~i~~i~~---------------~aF~~c~~L~~i~l~~~-~i~ 299 (379)
T 4h09_A 239 MKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFY-AKVKTVPY---------------LLCSGCSNLTKVVMDNS-AIE 299 (379)
T ss_dssp CSSCCEEEECTT--CCEECTTTTTTCTTCCEEEEC-CCCSEECT---------------TTTTTCTTCCEEEECCT-TCC
T ss_pred CccceEEEcCCC--ccEeCccccceeehhcccccc-ccceeccc---------------ccccccccccccccccc-ccc
Confidence 557888887542 334444445667888888771 12444432 12234677888877654 344
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeec
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCS 169 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~ 169 (225)
.+. ......+.+|+.+.+.. +++.|.. ..-....+|+.+.+-+ +++.+..
T Consensus 300 ~I~-~~aF~~c~~L~~i~lp~--~l~~I~~--------------~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 300 TLE-PRVFMDCVKLSSVTLPT--ALKTIQV--------------YAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp EEC-TTTTTTCTTCCEEECCT--TCCEECT--------------TTTTTCTTCCCCCCCT--TCCEECT
T ss_pred eeh-hhhhcCCCCCCEEEcCc--cccEEHH--------------HHhhCCCCCCEEEECC--ccCEEch
Confidence 442 23345667788777742 3444431 1223455666666653 3555544
Done!