BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046908
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 147/470 (31%), Positives = 215/470 (45%), Gaps = 76/470 (16%)
Query: 17 NNFEGHIP-QCLNNLTHLKVLDISNNQLSGKVPSTLTNLT-SLEYLDRFSINFQGTISIN 74
NNF G +P L + LKVLD+S N+ SG++P +LTNL+ SL LD S NF G I N
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 75 SLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKL-SDCHLHVIPSFLLQHYHLIFL 133
N P + L+ L L ++ IP L L+ L
Sbjct: 385 LCQN------------------------PKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 420
Query: 134 DLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYM 193
LS N + +G +P ++G L KL L + N+ EG+IP + +K L
Sbjct: 421 HLSFNYL------------SGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 194 QDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMN-LTHLHWLYLDNNHFSG 252
L N+ +GE+P + S C L+ LSNN G+I PK++ L +L L L NN FSG
Sbjct: 468 LILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSG 525
Query: 253 KMDDANILVQLSQLKSLELIDI----------FEXXXXXXXXXXXXXXXXKHLYLQKNAI 302
NI +L +SL +D+ +++Y++ + +
Sbjct: 526 -----NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 303 TGDN-------KFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK 355
+ +F G Q+N LS + + GH + N
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT-----------SPTFDNNG 629
Query: 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRL 415
M LD+S N LSG IP+EIG + + LNL +N +SG+IP+ +L+ LDLS N+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 416 SGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCG 465
G IP ++ L L+ ++S NNLSGP P+ QF TF + + N LCG
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 153/502 (30%), Positives = 221/502 (44%), Gaps = 85/502 (16%)
Query: 2 GICNLKNLFELDLSSNNFEGH--IPQCLNN-LTHLKVLDISNNQLSGKVPSTLTNLTSLE 58
G L +L LDLS+N+ G + L++ LK L IS N++SG V ++ +LE
Sbjct: 143 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLE 200
Query: 59 YLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCH-L 117
+LD S NF I L + S L+ L IS G+ + + ++LK+L +S +
Sbjct: 201 FLDVSSNNFSTGIPF--LGDCSALQHLDIS-GNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 118 HVIPSFLLQHYHLIFLDLSNNKVVGNFP-----IC--------SNNNFAGKLPRNMGIVL 164
IP L+ L +L L+ NK G P C S N+F G +P G
Sbjct: 258 GPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 165 QKLIYLDMPKNIFEGDIPY-SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
N F G++P ++ +M+ L + DLS N FSGELP+ + + +L DLS+
Sbjct: 316 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 224 NNFFGQIFPKYMN--LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXX 281
NNF G I P L LYL NN F+GK+ L S+L SL
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT--LSNCSELVSL------------ 420
Query: 282 XXXXXXXXXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 341
HL N G IP + LS L L L N L+G IP EL
Sbjct: 421 ------------HLSF--------NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 342 HVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSN 401
+V K + L L N+L+GEIP + N+ ++LSNN L+G IP+
Sbjct: 461 YV-----------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 402 LKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNH 461
L+ L LS+N SG+IP +L L +++ N +G P A F +S +
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP----AAMFKQSGKIAAN 565
Query: 462 ELCGSL--------IRKKCSSA 475
+ G ++K+C A
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGA 587
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 145/520 (27%), Positives = 215/520 (41%), Gaps = 126/520 (24%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67
NL LD+SSNNF IP L + + L+ LDIS N+LSG ++ T L+ L+ S F
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 68 QGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQ 126
G I P L+ L L++ IP FL
Sbjct: 257 VGPIPP----------------------------LPLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 127 HYH-LIFLDLSNNKVVGNFP------------ICSNNNFAGKLPRNMGIVLQKLIYLDMP 173
L LDLS N G P S+NNF+G+LP + + ++ L LD+
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 174 KNIFEGDIPYSIGEM-KELYMQDLSRNNFSGE-LPQPIVSGCVALDLFDLSNNNFFGQIF 231
N F G++P S+ + L DLS NNFSG LP + L L NN F G+I
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL-IDIFEXXXXXXXXXXXXXX 290
P N + L L+L N+ SG + + L LS+L+ L+L +++ E
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIPQELMYVKTL- 465
Query: 291 XXKHLYLQKNAITGD------------------NKFFGRIPYQINELSNLHVLLLRGNSL 332
+ L L N +TG+ N+ G IP I L NL +L L NS
Sbjct: 466 --ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 333 QGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP----REIGQL---------- 378
G+IP EL + + + LDL++N +G IP ++ G++
Sbjct: 524 SGNIPAEL-----------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 379 ---------------------QNIRA-----------LNLSNNFLSGAIPESFSNLKMTE 406
Q IR+ N+++ G +F N
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 407 SLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDK 446
LD+S+N LSG+IP ++ + +L N+ +N++SG PD+
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 178/435 (40%), Gaps = 96/435 (22%)
Query: 33 LKVLDISNNQLSGKVPSTLTNLTS---LEYLDRFS--INFQGTISINSLANHSKLEVLLI 87
L LD+S N LSG V +TLT+L S L++L+ S ++F G +S N LEVL +
Sbjct: 99 LTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDL 155
Query: 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPI- 146
S+ S + W + LK HL + S NK+ G+ +
Sbjct: 156 SANS-ISGANVVGWVLSDGCGELK----HLAI----------------SGNKISGDVDVS 194
Query: 147 -CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGEL 205
C N L +LD+ N F IP+ +G+ L D+S N SG+
Sbjct: 195 RCVN-----------------LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 236
Query: 206 PQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265
+ I S C L L ++S+N F G I P + L L +L L N F+G++ D +
Sbjct: 237 SRAI-STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDF-LSGACDT 292
Query: 266 LKSLELIDIFEXXXXXXXXXXXXXXXXKHLYLQKNAITGD-----------NKFFGRIPY 314
L L+L H Y G N F G +P
Sbjct: 293 LTGLDL-------------------SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 315 Q-INELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPR 373
+ ++ L VL L N G +P L ++S L LDLSSN SG I
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT----------LDLSSNNFSGPILP 383
Query: 374 EIGQ--LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSN 431
+ Q ++ L L NN +G IP + SN SL LS N LSG IP L L+ L +
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 432 FNVSYNNLSGPTPDK 446
+ N L G P +
Sbjct: 444 LKLWLNMLEGEIPQE 458
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 38/241 (15%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ N NL + LS+N G IP+ + L +L +L +SNN SG +P+ L + SL +LD
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHP---------------TSQ 106
+ F GTI K+ I+ G + +K + + Q
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIA-GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 107 LKVLKLSD-CHL-------HVIPSFLLQHYHLIFLDLSNN-------KVVGNFPIC---- 147
L L + C++ H P+F + ++FLD+S N K +G+ P
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 148 -SNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELP 206
+N+ +G +P +G L+ L LD+ N +G IP ++ + L DLS NN SG +P
Sbjct: 660 LGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Query: 207 Q 207
+
Sbjct: 719 E 719
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 140/347 (40%), Gaps = 51/347 (14%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ N L L LS N G IP L +L+ L+ L + N L G++P L + +LE L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETW-HPTSQLKVLKLSDCHLHV-I 120
+ G I + L+N + L IS +N L + W L +LKLS+ I
Sbjct: 471 DFNDLTGEIP-SGLSNCTNLN--WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
P+ L LI+LDL+ N G P +GK+ N I ++ +Y+ E
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-SGKIAANF-IAGKRYVYIKNDGMKKECH 585
Query: 181 IPYSIGEMKELYMQDLSR----------NNFSGELPQPIVSGCVALDLFDLSNNNFFGQI 230
++ E + + + L+R + G P ++ D+S N G I
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 231 FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXXXXXXX 290
+ ++ +L L L +N SG + D ++ L+ L ++D+
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPD-----EVGDLRGLNILDL---------------- 684
Query: 291 XXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 337
NK GRIP ++ L+ L + L N+L G IP
Sbjct: 685 -------------SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 38/234 (16%)
Query: 244 YLDNNHFSGKMDD--------------------ANILVQLSQLKSLELIDIFEXXXX--X 281
+L N+H +G + L L L+ +++
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 282 XXXXXXXXXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 341
+ L L N+I+G N + EL +L + GN + G + C
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVSRC 196
Query: 342 HVSRFLH----------RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFL 391
FL F + + LD+S N+LSG+ R I ++ LN+S+N
Sbjct: 197 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 392 SGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTG-LNFLSNFNVSYNNLSGPTP 444
G IP LK + L L+ N+ +G IP L+G + L+ ++S N+ G P
Sbjct: 257 VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 153/502 (30%), Positives = 221/502 (44%), Gaps = 85/502 (16%)
Query: 2 GICNLKNLFELDLSSNNFEGH--IPQCLNN-LTHLKVLDISNNQLSGKVPSTLTNLTSLE 58
G L +L LDLS+N+ G + L++ LK L IS N++SG V ++ +LE
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLE 203
Query: 59 YLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCH-L 117
+LD S NF I L + S L+ L IS G+ + + ++LK+L +S +
Sbjct: 204 FLDVSSNNFSTGIPF--LGDCSALQHLDIS-GNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 118 HVIPSFLLQHYHLIFLDLSNNKVVGNFP-----IC--------SNNNFAGKLPRNMGIVL 164
IP L+ L +L L+ NK G P C S N+F G +P G
Sbjct: 261 GPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 165 QKLIYLDMPKNIFEGDIPY-SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
N F G++P ++ +M+ L + DLS N FSGELP+ + + +L DLS+
Sbjct: 319 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 224 NNFFGQIFPKYMN--LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXX 281
NNF G I P L LYL NN F+GK+ L S+L SL
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT--LSNCSELVSL------------ 423
Query: 282 XXXXXXXXXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 341
HL N G IP + LS L L L N L+G IP EL
Sbjct: 424 ------------HLSF--------NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 342 HVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSN 401
+V K + L L N+L+GEIP + N+ ++LSNN L+G IP+
Sbjct: 464 YV-----------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 402 LKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNH 461
L+ L LS+N SG+IP +L L +++ N +G P A F +S +
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP----AAMFKQSGKIAAN 568
Query: 462 ELCGSL--------IRKKCSSA 475
+ G ++K+C A
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGA 590
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 158/587 (26%), Positives = 227/587 (38%), Gaps = 174/587 (29%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67
NL LD+SSNNF IP L + + L+ LDIS N+LSG ++ T L+ L+ S F
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 68 QGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQ 126
G I P L+ L L++ IP FL
Sbjct: 260 VGPIPP----------------------------LPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 127 HYH-LIFLDLSNNKVVGNFP------------ICSNNNFAGKLPRNMGIVLQKLIYLDMP 173
L LDLS N G P S+NNF+G+LP + + ++ L LD+
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 174 KNIFEGDIPYSIGEM-KELYMQDLSRNNFSGE-LPQPIVSGCVALDLFDLSNNNFFGQIF 231
N F G++P S+ + L DLS NNFSG LP + L L NN F G+I
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL-IDIFEXXXXXXXXXXXXXX 290
P N + L L+L N+ SG + + L LS+L+ L+L +++ E
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIPQELMYVKTL- 468
Query: 291 XXKHLYLQKNAITGD------------------NKFFGRIPYQINELSNLHVLLLRGNSL 332
+ L L N +TG+ N+ G IP I L NL +L L NS
Sbjct: 469 --ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 333 QGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP----REIGQL---------- 378
G+IP EL + + + LDL++N +G IP ++ G++
Sbjct: 527 SGNIPAEL-----------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 379 ---------------------QNIRA-----------LNLSNNFLSGAIPESFSNLKMTE 406
Q IR+ N+++ G +F N
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 407 SLDLSHNRLSGHIP---------------------------------------------- 420
LD+S+N LSG+IP
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 421 -PQ-LTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCG 465
PQ ++ L L+ ++S NNLSGP P+ QF TF + + N LCG
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 178/437 (40%), Gaps = 96/437 (21%)
Query: 31 THLKVLDISNNQLSGKVPSTLTNLTS---LEYLDRFS--INFQGTISINSLANHSKLEVL 85
L LD+S N LSG V +TLT+L S L++L+ S ++F G +S N LEVL
Sbjct: 100 ASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVL 156
Query: 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFP 145
+S+ S + W + LK HL + S NK+ G+
Sbjct: 157 DLSANS-ISGANVVGWVLSDGCGELK----HLAI----------------SGNKISGDVD 195
Query: 146 I--CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSG 203
+ C N L +LD+ N F IP+ +G+ L D+S N SG
Sbjct: 196 VSRCVN-----------------LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 204 ELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263
+ + I S C L L ++S+N F G I P + L L +L L N F+G++ D +
Sbjct: 238 DFSRAI-STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDF-LSGAC 293
Query: 264 SQLKSLELIDIFEXXXXXXXXXXXXXXXXKHLYLQKNAITGD-----------NKFFGRI 312
L L+L H Y G N F G +
Sbjct: 294 DTLTGLDL-------------------SGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 313 PYQ-INELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371
P + ++ L VL L N G +P L ++S L LDLSSN SG I
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT----------LDLSSNNFSGPI 384
Query: 372 PREIGQ--LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429
+ Q ++ L L NN +G IP + SN SL LS N LSG IP L L+ L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 430 SNFNVSYNNLSGPTPDK 446
+ + N L G P +
Sbjct: 445 RDLKLWLNMLEGEIPQE 461
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 38/241 (15%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ N NL + LS+N G IP+ + L +L +L +SNN SG +P+ L + SL +LD
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHP---------------TSQ 106
+ F GTI K+ I+ G + +K + + Q
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIA-GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 107 LKVLKLSD-CHL-------HVIPSFLLQHYHLIFLDLSNN-------KVVGNFPIC---- 147
L L + C++ H P+F + ++FLD+S N K +G+ P
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 148 -SNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELP 206
+N+ +G +P +G L+ L LD+ N +G IP ++ + L DLS NN SG +P
Sbjct: 663 LGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 207 Q 207
+
Sbjct: 722 E 722
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 38/234 (16%)
Query: 244 YLDNNHFSGKMDD--------------------ANILVQLSQLKSLELIDIFEXXXX--X 281
+L N+H +G + L L L+ +++
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 282 XXXXXXXXXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 341
+ L L N+I+G N + EL +L + GN + G + C
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVSRC 199
Query: 342 HVSRFLH----------RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFL 391
FL F + + LD+S N+LSG+ R I ++ LN+S+N
Sbjct: 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 392 SGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTG-LNFLSNFNVSYNNLSGPTP 444
G IP LK + L L+ N+ +G IP L+G + L+ ++S N+ G P
Sbjct: 260 VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 110/266 (41%), Gaps = 68/266 (25%)
Query: 224 NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXX 283
NN G I P LT LH+LY+ + + SG + D LSQ+K+L +D
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-----LSQIKTLVTLD---------- 131
Query: 284 XXXXXXXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHV 343
NA++ G +P I+ L NL + GN + G IP+
Sbjct: 132 -------------FSYNALS------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK 403
S K + +S N L+G+IP L N+ ++LS N L G F + K
Sbjct: 173 S----------KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221
Query: 404 MTE-----------------------SLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
T+ LDL +NR+ G +P LT L FL + NVS+NNL
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 441 GPTPDKEQFATFDESSYTGNHELCGS 466
G P FD S+Y N LCGS
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGS 307
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK 355
YL I G N G IP I +L+ LH L + ++ G IP+ F S +K
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-----------FLSQIK 125
Query: 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL-KMTESLDLSHNR 414
+ LD S N LSG +P I L N+ + N +SGAIP+S+ + K+ S+ +S NR
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 415 LSGHIPPQLTGLNFLSNFNVSYNNLSG 441
L+G IPP LN L+ ++S N L G
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDL 410
Y N Y+ G+ N L G IP I +L + L +++ +SGAIP+ S +K +LD
Sbjct: 77 YLNFLYIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 411 SHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
S+N LSG +PP ++ L L N +SG PD
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 129/320 (40%), Gaps = 52/320 (16%)
Query: 93 MLQVKTETWHPTSQLKVLKLSDCH----LHVIPSFLLQHYHLIFLDLSNNKVVGNFPICS 148
+LQ+K + +PT+ L +DC L V+ Q Y + LDLS + +PI S
Sbjct: 11 LLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70
Query: 149 N---------------NNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYM 193
+ NN G +P + + Q L YL + G IP + ++K L
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 194 QDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW-LYLDNNHFSG 252
D S N SG LP P +S L N G I Y + + L + + N +G
Sbjct: 130 LDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 253 KMDD--ANILVQLSQLKSLELIDIFEXXXXXXXXXX-XXXXXXKHLYLQKNAITGDNKFF 309
K+ AN+ +L +D+ + ++L KN++ D
Sbjct: 189 KIPPTFANL--------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD---L 237
Query: 310 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG 369
G++ NL+ L LR N + G +P L + LK++ L++S N L G
Sbjct: 238 GKVGLS----KNLNGLDLRNNRIYGTLPQGL-----------TQLKFLHSLNVSFNNLCG 282
Query: 370 EIPREIGQLQNIRALNLSNN 389
EIP+ G LQ +NN
Sbjct: 283 EIPQG-GNLQRFDVSAYANN 301
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 27/209 (12%)
Query: 17 NNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN-FQGTI--SI 73
NN G IP + LT L L I++ +SG +P L+ + +L LD FS N GT+ SI
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD-FSYNALSGTLPPSI 145
Query: 74 NSLANHSKLEVLLISSGSNMLQVKTETWHPTSQL-KVLKLSDCHL--HVIPSFLLQHYHL 130
+SL N V + G+ + +++ S+L + +S L + P+F + +L
Sbjct: 146 SSLPNL----VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNL 199
Query: 131 IFLDLSNNKVVGNFPI------------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178
F+DLS N + G+ + + N+ A L + +G+ + L LD+ N
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS-KNLNGLDLRNNRIY 257
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELPQ 207
G +P + ++K L+ ++S NN GE+PQ
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 118/272 (43%), Gaps = 32/272 (11%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NL NL L+LSSN L+ LT L+ L S+NQ++ P L NLT+LE LD S
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLD-IS 181
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVIPSF 123
N IS+ LA + LE L+ ++ Q+ T + L L L+ L I +
Sbjct: 182 SNKVSDISV--LAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDIGT- 234
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAG-KLPRNM--------GIVLQKLIYLDMPK 174
L +L LDL+NN++ P+ KL N G L L L++ +
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNE 292
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N E P I +K L L NN S P VS L SNN
Sbjct: 293 NQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVSD--VSSL 345
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
NLT+++WL +N S AN L +++QL
Sbjct: 346 ANLTNINWLSAGHNQISDLTPLAN-LTRITQL 376
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVP-STLTNLTSLE 58
LGI L NL EL L+ N + L +LT+L LD++NNQ+S P S LT LT L+
Sbjct: 213 LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ P L NLT+L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 62 RFSINFQGTISINSLANHSKLEV 84
F+ + +L N ++LE+
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLEL 136
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 118/272 (43%), Gaps = 32/272 (11%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NL NL L+LSSN L+ LT L+ L+ S+NQ++ P L NLT+LE LD S
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLD-IS 181
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVIPSF 123
N IS+ LA + LE L+ ++ Q+ T + L L L+ L I +
Sbjct: 182 SNKVSDISV--LAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDIGT- 234
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAG-KLPRNM--------GIVLQKLIYLDMPK 174
L +L LDL+NN++ P+ KL N G L L L++ +
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNE 292
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N E P I +K L L NN S P VS L NN
Sbjct: 293 NQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSL 345
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
NLT+++WL +N S AN L +++QL
Sbjct: 346 ANLTNINWLSAGHNQISDLTPLAN-LTRITQL 376
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVP-STLTNLTSLE 58
LGI L NL EL L+ N + L +LT+L LD++NNQ+S P S LT LT L+
Sbjct: 213 LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ P L NLT+L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 62 RFSINFQGTISINSLANHSKLEV 84
F+ + +L N ++LE+
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLEL 136
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 117/272 (43%), Gaps = 32/272 (11%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NL NL L+LSSN L+ LT L+ L S+NQ++ P L NLT+LE LD S
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLD-IS 181
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVIPSF 123
N IS+ LA + LE L+ ++ Q+ T + L L L+ L I +
Sbjct: 182 SNKVSDISV--LAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDIGT- 234
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAG-KLPRNM--------GIVLQKLIYLDMPK 174
L +L LDL+NN++ P+ KL N G L L L++ +
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNE 292
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N E P I +K L L NN S P VS L NN
Sbjct: 293 NQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSL 345
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
NLT+++WL +N S AN L +++QL
Sbjct: 346 ANLTNINWLSAGHNQISDLTPLAN-LTRITQL 376
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVP-STLTNLTSLE 58
LGI L NL EL L+ N + L +LT+L LD++NNQ+S P S LT LT L+
Sbjct: 213 LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ P L NLT+L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 62 RFSINFQGTISINSLANHSKLEV 84
F+ + +L N ++LE+
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLEL 136
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 371 IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLS 430
+P+E+ +++ ++LSNN +S +SFSN+ +L LS+NRL P GL L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 431 NFNVSYNNLS 440
++ N++S
Sbjct: 106 LLSLHGNDIS 115
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSL 57
+++ EL L N F +P+ L+N HL ++D+SNN++S + +N+T L
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 305 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSS 364
D F +P +++ +L ++ L N +S ++ +SN+ + L LS
Sbjct: 39 DGNQFTLVPKELSNYKHLTLIDLSNN-----------RISTLSNQSFSNMTQLLTLILSY 87
Query: 365 NELSGEIPREIGQLQNIRALNLSNNFLSGAIPE-SFSNLKMTESLDLSHNRL 415
N L PR L+++R L+L N +S +PE +F++L L + N L
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 312 IPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371
IP + EL L GN +P EL SN K++ +DLS+N +S
Sbjct: 29 IPRDVTEL------YLDGNQFT-LVPKEL-----------SNYKHLTLIDLSNNRISTLS 70
Query: 372 PREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSN 431
+ + + L LS N L P +F LK L L N +S L+ LS+
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130
Query: 432 FNVSYNNL 439
+ N L
Sbjct: 131 LAIGANPL 138
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
N K+L +DLS+N Q +N+T L L +S N+L P T L SL L
Sbjct: 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS-GEIPREIGQ 377
L+ L L+L+ N L+ EL ++ + +K + LD+S N +S E +
Sbjct: 347 LTELETLILQMNQLK-----ELSKIAEM----TTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 378 LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437
+++ +LN+S+N L+ I + LDL N++ IP Q+ L L NV+ N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASN 454
Query: 438 NLSGPTPD 445
L PD
Sbjct: 455 QLKS-VPD 461
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
LS+L L+L GN +Q S L F S L + L L+ IG L
Sbjct: 75 LSHLSTLILTGNPIQ----------SLALGAF-SGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
+ ++ LN+++N + S +PE FSNL E LDLS N++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%)
Query: 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399
LCH RF+ LDL N + E ++ L L+ N +S P +F
Sbjct: 17 LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76
Query: 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439
+NL +L L NRL TGL+ L+ ++S N +
Sbjct: 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD--RFSI 65
+L EL+L+ N P NNL +L+ L + +N+L T L++L LD I
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 66 NFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLL 125
L N LEV ++++ + + + L+ L L C+L IP+ L
Sbjct: 117 VILLDYMFQDLYNLKSLEV----GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 126 QHYH-LIFLDL 135
H H LI L L
Sbjct: 173 SHLHGLIVLRL 183
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
LS+L L+L GN +Q S L F S L + L L+ IG L
Sbjct: 76 LSHLSTLILTGNPIQ----------SLALGAF-SGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
+ ++ LN+++N + S +PE FSNL E LDLS N++
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRF--YSNLKYMAGLDLSSNELSGEIPREIG 376
LS+L L+L GN +Q S L F S+L+ + L+ + L IG
Sbjct: 77 LSHLSTLILTGNPIQ----------SLALGAFSGLSSLQKLVALETNLASLEN---FPIG 123
Query: 377 QLQNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
L+ ++ LN+++N + S +PE FSNL E LDLS N++
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
LS+L L+L GN +Q S L F S L + L L+ IG L
Sbjct: 76 LSHLSTLILTGNPIQ----------SLALGAF-SGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
+ ++ LN+++N + S +PE FSNL E LDLS N++
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
LS+L L+L GN +Q S L F S L + L L+ IG L
Sbjct: 77 LSHLSTLILTGNPIQ----------SLALGAF-SGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
+ ++ LN+++N + S +PE FSNL E LDLS N++
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 317 NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG 376
N LS+L VL + GNS Q FL ++ L+ + LDLS +L P
Sbjct: 466 NGLSSLEVLKMAGNSFQ----------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515
Query: 377 QLQNIRALNLS-NNFLS-GAIPESFSNLKMTESLDLSHNRLSG-------HIPPQLTGLN 427
L +++ LN+S NNF S P + L + LD S N + H P L LN
Sbjct: 516 SLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573
Query: 428 FLSN 431
N
Sbjct: 574 LTQN 577
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
LS+L L+L GN +Q +S L + L L+ IG L
Sbjct: 99 LSHLSTLILTGNPIQSLALGA-----------FSGLSSLQKLVAVETNLASLENFPIGHL 147
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
+ ++ LN+++N + S +PE FSNL E LDLS N++
Sbjct: 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK-VPSTLTNLTSLEYLDRF 63
+L+NL LD+S + N L+ L+VL ++ N +P T L +L +LD
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
+ +S + + S L+VL +S +N + T + + L+VL S H+
Sbjct: 503 QCQLE-QLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560
Query: 124 LLQHY--HLIFLDLSNN 138
LQH+ L FL+L+ N
Sbjct: 561 ELQHFPSSLAFLNLTQN 577
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNL--TSLEYLDRF 63
LK+L L +SN + +L L+ LD+S N LS K + ++ SL+YLD
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD-- 403
Query: 64 SINFQGTISINSLANHSKLEVL--LISSGSNMLQVKT-ETWHPTSQLKVLKLSDCHLHVI 120
++F G I+++S N LE L L SN+ Q+ + L L +S H V
Sbjct: 404 -LSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
++ IF LS+ +V+ + N+F ++ L+ L +LD+ + E
Sbjct: 461 -------FNGIFNGLSSLEVLK----MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 181 IPYSIGEMKELYMQDLSRNNF 201
P + + L + ++S NNF
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNF 530
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 103/245 (42%), Gaps = 48/245 (19%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNL--TSLEYLDRFSINFQ 68
L+L SN + + LT L L +S+N LS K + ++ TSL+YLD ++F
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD---LSFN 88
Query: 69 GTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF--LLQ 126
G I+++S N L ++ QL+ L +L + F L
Sbjct: 89 GVITMSS----------------NFLGLE--------QLEHLDFQHSNLKQMSEFSVFLS 124
Query: 127 HYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD-IPYSI 185
+LI+LD+S+ F N F G L L L M N F+ + +P
Sbjct: 125 LRNLIYLDISHTHTRVAF----NGIFNG---------LSSLEVLKMAGNSFQENFLPDIF 171
Query: 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG-QIFPKYMNLTHLHWLY 244
E++ L DLS+ +L + +L + ++S+NNFF FP Y L L L
Sbjct: 172 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLD 229
Query: 245 LDNNH 249
NH
Sbjct: 230 YSLNH 234
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 317 NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG 376
N LS+L VL + GNS Q FL ++ L+ + LDLS +L P
Sbjct: 147 NGLSSLEVLKMAGNSFQ----------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 377 QLQNIRALNLS-NNFLS-GAIPESFSNLKMTESLDLSHNRLSG-------HIPPQLTGLN 427
L +++ LN+S NNF S P + L + LD S N + H P L LN
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
Query: 428 FLSN 431
N
Sbjct: 255 LTQN 258
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK-VPSTLTNLTSLEYLDRF 63
+L+NL LD+S + N L+ L+VL ++ N +P T L +L +LD
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
+ +S + + S L+VL +S N + T + + L+VL S H+
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 124 LLQHY--HLIFLDLSNN 138
LQH+ L FL+L+ N
Sbjct: 242 ELQHFPSSLAFLNLTQN 258
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 317 NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG 376
N LS+L VL + GNS Q FL ++ L+ + LDLS +L P
Sbjct: 442 NGLSSLEVLKMAGNSFQ----------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 377 QLQNIRALNLS-NNFLS-GAIPESFSNLKMTESLDLSHNRLSG-------HIPPQLTGLN 427
L +++ LN+S NNF S P + L + LD S N + H P L LN
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Query: 428 FLSN 431
N
Sbjct: 550 LTQN 553
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
LS+L L+L GN +Q +S L + L L+ IG L
Sbjct: 75 LSHLSTLILTGNPIQSLALGA-----------FSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
+ ++ LN+++N + S +PE FSNL E LDLS N++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK-VPSTLTNLTSLEYLDRF 63
+L+NL LD+S + N L+ L+VL ++ N +P T L +L +LD
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
+ +S + + S L+VL +S +N + T + + L+VL S H+
Sbjct: 479 QCQLE-QLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 124 LLQHY--HLIFLDLSNN 138
LQH+ L FL+L+ N
Sbjct: 537 ELQHFPSSLAFLNLTQN 553
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 23/201 (11%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNL--TSLEYLDRF 63
LK+L L +SN + +L L+ LD+S N LS K + ++ TSL+YLD
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD-- 379
Query: 64 SINFQGTISINSLANHSKLEVL--LISSGSNMLQVKT-ETWHPTSQLKVLKLSDCHLHVI 120
++F G I+++S N LE L L SN+ Q+ + L L +S H V
Sbjct: 380 -LSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
++ IF LS+ +V+ + N+F ++ L+ L +LD+ + E
Sbjct: 437 -------FNGIFNGLSSLEVLK----MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 181 IPYSIGEMKELYMQDLSRNNF 201
P + + L + ++S NNF
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNF 506
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
LS+L L+L GN +Q +S L + L L+ IG L
Sbjct: 75 LSHLSTLILTGNPIQSLALGA-----------FSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
+ ++ LN+++N + S +PE FSNL E LDLS N++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLE 58
L+NL LDLS E P N+L+ L+VL++++NQL LTSL+
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 317 NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG 376
N LS+L VL + GNS Q FL ++ L+ + LDLS +L P
Sbjct: 442 NGLSSLEVLKMAGNSFQ----------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 377 QLQNIRALNLSNNFLSGAIPE 397
L +++ LN+++N L ++P+
Sbjct: 492 SLSSLQVLNMASNQLK-SVPD 511
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
L +L L+L GN +Q P +S L + L +L+ IGQL
Sbjct: 74 LHHLSNLILTGNPIQSFSPGS-----------FSGLTSLENLVAVETKLASLESFPIGQL 122
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
++ LN+++NF+ S +P FSNL +DLS+N +
Sbjct: 123 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQL-SGKVPSTLTNLTSLEYL 60
G+ +L+NL ++ + E P + L LK L++++N + S K+P+ +NLT+L ++
Sbjct: 97 GLTSLENLVAVETKLASLES-FP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 153
Query: 61 DRFSINFQGTISINSL 76
D S N+ TI++N L
Sbjct: 154 D-LSYNYIQTITVNDL 168
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
L +L L+L GN +Q P +S L + L +L+ IGQL
Sbjct: 79 LHHLSNLILTGNPIQSFSPGS-----------FSGLTSLENLVAVETKLASLESFPIGQL 127
Query: 379 QNIRALNLSNNFL-SGAIPESFSNLKMTESLDLSHNRL 415
++ LN+++NF+ S +P FSNL +DLS+N +
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQL-SGKVPSTLTNLTSLEYL 60
G+ +L+NL ++ + E P + L LK L++++N + S K+P+ +NLT+L ++
Sbjct: 102 GLTSLENLVAVETKLASLES-FP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158
Query: 61 DRFSINFQGTISINSL 76
D S N+ TI++N L
Sbjct: 159 D-LSYNYIQTITVNDL 173
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 117/272 (43%), Gaps = 33/272 (12%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NL NL L+LSSN L+ LT L+ L+ N Q++ P L NLT+LE LD S
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGN-QVTDLKP--LANLTTLERLD-IS 180
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVIPSF 123
N IS+ LA + LE L+ ++ Q+ T + L L L+ L I +
Sbjct: 181 SNKVSDISV--LAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDIGT- 233
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAG-KLPRNM--------GIVLQKLIYLDMPK 174
L +L LDL+NN++ P+ KL N G L L L++ +
Sbjct: 234 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNE 291
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N E P I +K L L NN S P VS L SNN
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVSD--VSSL 344
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
NLT+++WL +N S AN L +++QL
Sbjct: 345 ANLTNINWLSAGHNQISDLTPLAN-LTRITQL 375
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVP-STLTNLTSLE 58
LGI L NL EL L+ N + L +LT+L LD++NNQ+S P S LT LT L+
Sbjct: 212 LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 266
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ P L NLT+L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 62 RFSINFQGTISINSLANHSKLEV 84
F+ + +L N ++LE+
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLEL 136
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 341 CHVSR-----FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI 395
C +S+ L +S+ + L L+ NE++ L ++ LNLS NFL
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339
Query: 396 PESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
F NL E LDLS+N + GL L + N L PD
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
L NL ELDLS N + + LT LK L + NQL LTSL+Y+
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 116/272 (42%), Gaps = 33/272 (12%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NL NL L+LSSN L+ LT L+ L N Q++ P L NLT+LE LD S
Sbjct: 131 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLD-IS 184
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVIPSF 123
N IS+ LA + LE L+ ++ Q+ T + L L L+ L I +
Sbjct: 185 SNKVSDISV--LAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDIGT- 237
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAG-KLPRNM--------GIVLQKLIYLDMPK 174
L +L LDL+NN++ P+ KL N G L L L++ +
Sbjct: 238 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNE 295
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N E P I +K L L NN S P VS L +NN
Sbjct: 296 NQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSL 348
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
NLT+++WL +N S AN L +++QL
Sbjct: 349 ANLTNINWLSAGHNQISDLTPLAN-LTRITQL 379
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVP-STLTNLTSLE 58
LGI L NL EL L+ N + L +LT+L LD++NNQ+S P S LT LT L+
Sbjct: 216 LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 270
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ P L NLT+L L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 117
Query: 62 RFSINFQGTISINSLANHSKLEV 84
F+ + +L N ++LE+
Sbjct: 118 LFNNQITDIDPLKNLTNLNRLEL 140
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 357 MAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416
+ LDLS+N ++ ++ + N++AL L++N ++ +SFS+L E LDLS+N LS
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNR 414
+ + LDLS+N ++ ++ + N++AL L++N ++ +SFS+L E LDLS+N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 415 LS 416
LS
Sbjct: 112 LS 113
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 116/272 (42%), Gaps = 33/272 (12%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NL NL L+LSSN L+ LT L+ L+ N Q++ P L NLT+LE LD S
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGN-QVTDLKP--LANLTTLERLD-IS 180
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVIPSF 123
N IS+ LA + LE L+ ++ Q+ T + L L L+ L I +
Sbjct: 181 SNKVSDISV--LAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDIGT- 233
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAG-KLPRNM--------GIVLQKLIYLDMPK 174
L +L LDL+NN++ P+ KL N G L L L++ +
Sbjct: 234 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNE 291
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N E P I +K L L NN S P VS L NN
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSL 344
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
NLT+++WL +N S AN L +++QL
Sbjct: 345 ANLTNINWLSAGHNQISDLTPLAN-LTRITQL 375
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVP-STLTNLTSLE 58
LGI L NL EL L+ N + L +LT+L LD++NNQ+S P S LT LT L+
Sbjct: 212 LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 266
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ P L NLT+L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 62 RFSINFQGTISINSLANHSKLEV 84
F+ + +L N ++LE+
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLEL 136
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NL NL L+LSSN L+ LT L+ L N Q++ P L NLT+LE LD S
Sbjct: 132 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLD-IS 185
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVIPSF 123
N IS+ LA + LE L+ ++ Q+ T + L L L+ L I +
Sbjct: 186 SNKVSDISV--LAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDIGT- 238
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAG-KLPRNM--------GIVLQKLIYLDMPK 174
L +L LDL+NN++ P+ KL N G L L L++ +
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNE 296
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N E P I +K L L NN S P VS L NN
Sbjct: 297 NQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSL 349
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
NLT+++WL +N S AN L +++QL
Sbjct: 350 ANLTNINWLSAGHNQISDLTPLAN-LTRITQL 380
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVP-STLTNLTSLE 58
LGI L NL EL L+ N + L +LT+L LD++NNQ+S P S LT LT L+
Sbjct: 217 LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ P L NLT+L L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118
Query: 62 RFSINFQGTISINSLANHSKLEV 84
F+ + +L N ++LE+
Sbjct: 119 LFNNQITDIDPLKNLTNLNRLEL 141
>pdb|2MEV|4 Chain 4, Structural Refinement And Analysis Of Mengo Virus
pdb|1MEC|4 Chain 4, Conformational Variability Of A Picornavirus Capsid: Ph-
Dependent Structural Changes Of Mengo Virus Related To
Its Host Receptor Attachment Site And Disassembly
Length = 70
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 347 LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402
++ FYSN +Y +DLS+N + P+ GQ N+ LSGA+ +FSN+
Sbjct: 21 INNFYSN-QYQNSIDLSANATGSDPPKTYGQFSNL---------LSGAV-NAFSNM 65
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
LDL +N++S + LQ++ AL L NN +S ++FS L+ + L +S N L I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 420 PPQL 423
PP L
Sbjct: 118 PPNL 121
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 354 LKYMAGLDLSSN--ELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLS 411
L + LDLS N E S ++ L +++ LNLS+N G ++F E LDL+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 412 HNRLSGHIPPQ-LTGLNFLSNFNVSY 436
RL + P L+FL N++Y
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLTY 431
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 12 LDLSSNNFEGHIPQC-LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQ-G 69
LDL+ + PQ NL L+VL+++ L L L L +L+ +FQ G
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Query: 70 TIS-INSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHY 128
TI+ N L LEVL++SS +L + + +H ++ + LS L L H
Sbjct: 462 TITKTNLLQTVGSLEVLILSS-CGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL 520
Query: 129 HLIFLDLSNNKV 140
I+L+L+ N +
Sbjct: 521 KGIYLNLAANSI 532
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 6 LKNLFELDLSSNNFEGHIPQC----LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
L NL LDLS N+ E C L NL+HL+ L++S+N+ G LE LD
Sbjct: 346 LGNLQTLDLSHNDIEA--SDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLD 403
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 33/138 (23%)
Query: 26 CLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85
CL L +L+ LD+S+N + ++ SL+ L N S L+ L
Sbjct: 342 CLEKLGNLQTLDLSHNDIEA------SDCCSLQ-----------------LKNLSHLQTL 378
Query: 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV-IPSFLLQHYHLI--------FLDLS 136
+S + L ++++ + QL++L L+ LH+ P Q+ H + FLD S
Sbjct: 379 NLSH-NEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTS 437
Query: 137 NNKVVGNFPICSNNNFAG 154
N ++ P+ + N G
Sbjct: 438 NQHLLAGLPVLRHLNLKG 455
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 380 NIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439
++R L+L++ L+ L + LDLSHNRL +PP L L L S N L
Sbjct: 442 DVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498
Query: 440 S 440
Sbjct: 499 E 499
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 380 NIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439
++R L+L++ L+ L + LDLSHNRL +PP L L L S N L
Sbjct: 442 DVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498
Query: 440 S 440
Sbjct: 499 E 499
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 341 CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400
C +S +++LK M +DLS N L+ + L+ I LNL++N +S +P
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544
Query: 401 NLKMTESLDLSHNRL 415
L +++L N L
Sbjct: 545 ILSQQRTINLRQNPL 559
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPS-TLTNLTSLEYL 60
G+ L L +L LS+N FE +N L L I N ++ + L NL +L L
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
Query: 61 DRFSINFQGTISIN-SLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV 119
D + + + N L N S L+ L +S L +KTE + QL++L L+ L V
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKV 414
Query: 120 IPS-FLLQHYHLI--------FLDLSNNKVVGNFPICSNNNFAG 154
+ Q+ HL+ LD+S+ ++ P + N G
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 383 ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNN 438
L L + ++G +P SF+ L + S + G P+L G++++S+F ++ N
Sbjct: 97 CLQLRQDIVAGRLPCSFATLALLGSYTIQSEL--GDYDPELHGVDYVSDFKLAPNQ 150
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 383 ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNN 438
L L + ++G +P SF+ L + S + G P+L G++++S+F ++ N
Sbjct: 114 CLQLRQDIVAGRLPCSFATLALLGSYTIQSEL--GDYDPELHGVDYVSDFKLAPNQ 167
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 378 LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS----GHIPPQLTGLNFLSNFN 433
L +++ L L++N+L+ P FS+L L L+ NRL+ +P L L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL------D 532
Query: 434 VSYNNLSGPTPDKEQFATFDESSYTGNHELC 464
+S N L P PD F + T N +C
Sbjct: 533 ISRNQLLAPNPDV--FVSLSVLDITHNKFIC 561
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408
R + LK + L+L+ N+++ L N++ LNLS N L +F L +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 409 DLSHNRLS 416
DL N ++
Sbjct: 344 DLQKNHIA 351
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 380 NIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437
++R L+LS+ F+ F LK + L+L++N+++ GL+ L N+SYN
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 24/186 (12%)
Query: 295 LYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL 354
L LQ+N + K F ++ +S+L L + NSL H + C + + +
Sbjct: 382 LILQRNGL----KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 355 KYMAG------------LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402
+ G LDL +N + IP+++ LQ ++ LN+++N L F L
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Query: 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHE 462
+ + L N P G+ +LS + N SG + D + +G+ +
Sbjct: 497 TSLQYIWLHDNPWDCTCP----GIRYLSEW---INKHSGVVRNSAGSVAPDSAKCSGSGK 549
Query: 463 LCGSLI 468
S+I
Sbjct: 550 PVRSII 555
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 316 INELSNLHVLLLRGNSLQGHIPN----------ELCHVSRFLHRF----YSNLKYMAGLD 361
+ EL+NL L+L GN LQ +PN EL V L + L + L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 362 LSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPES-FSNLKMTESLDLSHNRL 415
L N+L +P+ + +L N+ L+L NN L ++PE F L + L L+ N+L
Sbjct: 140 LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
L NL LDL +N + + LT LK L +++NQL LTSL ++
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 351 YSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLD 409
+ N+ + L L N+LS +PR I + L++SNN L ++F ++L
Sbjct: 113 FQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 410 LSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
LS NRL+ H+ L+ + L + NVSYN LS
Sbjct: 172 LSSNRLT-HV--DLSLIPSLFHANVSYNLLS 199
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 1 LGICNLKN---------LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLS 44
LG+CN+K+ L EL++S N+F P + L+ LK L + N+Q+S
Sbjct: 203 LGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain
Length = 109
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 384 LNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437
L L + ++G +P SF+ L + S + G P+L G++++S+F ++ N
Sbjct: 20 LQLRQDIVAGRLPCSFATLALLGSYTIQSEL--GDYDPELHGVDYVSDFKLAPN 71
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 351 YSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLD 409
+ N+ + L L N+LS +PR I + L++SNN L ++F ++L
Sbjct: 119 FQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 410 LSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
LS NRL+ H+ L+ + L + NVSYN LS
Sbjct: 178 LSSNRLT-HV--DLSLIPSLFHANVSYNLLS 205
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 29/123 (23%)
Query: 133 LDLSNNKVV----GNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188
LDLS NK+ G+ C+N LQ LI N EGD YS+G +
Sbjct: 57 LDLSFNKITYIGHGDLRACAN--------------LQVLILKSSRINTIEGDAFYSLGSL 102
Query: 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF----FGQIFPKYMNLTHLHWLY 244
+ L + D ++ S P+ S L +L N + +FP NLT+L L
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSS----LKYLNLMGNPYQTLGVTSLFP---NLTNLQTLR 155
Query: 245 LDN 247
+ N
Sbjct: 156 IGN 158
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 29/123 (23%)
Query: 133 LDLSNNKVV----GNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188
LDLS NK+ G+ C+N LQ LI N EGD YS+G +
Sbjct: 31 LDLSFNKITYIGHGDLRACAN--------------LQVLILKSSRINTIEGDAFYSLGSL 76
Query: 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF----FGQIFPKYMNLTHLHWLY 244
+ L + D ++ S P+ S L +L N + +FP NLT+L L
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSS----LKYLNLMGNPYQTLGVTSLFP---NLTNLQTLR 129
Query: 245 LDN 247
+ N
Sbjct: 130 IGN 132
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS 392
++ L L+ N L+ E+P EI L N+R L+LS+N L+
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 370 EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429
EIP + + I + L N + P +FS K +DLS+N++S P GL L
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 430 SNFNVSYNN 438
++ V Y N
Sbjct: 83 NSL-VLYGN 90
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 370 EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429
EIP + + I + L N + P +FS K +DLS+N++S P GL L
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 430 SNFNVSYNN 438
++ V Y N
Sbjct: 83 NSL-VLYGN 90
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 362 LSSNELSGEIPRE--IGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
L+ NEL G I + G+L ++ L L N L+G P +F + L L N++
Sbjct: 36 LNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 420 PPQLTGLNFLSNFNVSYNNLSGPTP 444
GL+ L N+ N +S P
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMP 119
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 234 YMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXXXXXXXXXK 293
+ +L HL L L NH + + L+ L +LEL D K
Sbjct: 84 FKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFD--NRLTTIPNGAFVYLSKLK 139
Query: 294 HLYLQKNAITGDNKF-FGRIPY-------QINELSNLHVLLLRGNSLQGHIPNELCHVSR 345
L+L+ N I + F RIP ++ LS + G S ++ +C++
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199
Query: 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405
+ + L + LDLS N LS P L +++ L + + + +F NL+
Sbjct: 200 IPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 406 ESLDLSHNRLS 416
++L+HN L+
Sbjct: 258 VEINLAHNNLT 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,409,830
Number of Sequences: 62578
Number of extensions: 613373
Number of successful extensions: 2023
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 517
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)