Query 046908
Match_columns 551
No_of_seqs 366 out of 4253
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.6E-52 2.1E-56 463.2 35.5 442 5-467 138-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-49 3.3E-54 445.4 34.5 447 4-467 115-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 9.8E-44 2.1E-48 340.4 8.7 397 9-468 54-457 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.6E-42 3.6E-47 332.1 6.5 374 8-443 79-455 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.6E-39 1E-43 295.6 -9.8 424 7-464 45-542 (565)
6 KOG0444 Cytoskeletal regulator 100.0 3.8E-37 8.1E-42 297.5 -1.2 372 1-416 1-375 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 3.8E-36 8.3E-41 290.6 -1.8 372 28-444 4-379 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 1.8E-37 3.9E-42 285.1 -11.4 401 3-440 64-541 (565)
9 KOG0618 Serine/threonine phosp 100.0 1.7E-31 3.7E-36 269.8 -1.6 421 9-464 23-490 (1081)
10 KOG0618 Serine/threonine phosp 100.0 1.5E-31 3.2E-36 270.2 -2.2 395 8-439 46-488 (1081)
11 KOG4237 Extracellular matrix p 99.9 2.7E-28 5.9E-33 224.6 1.1 243 8-252 68-360 (498)
12 KOG4237 Extracellular matrix p 99.9 5.7E-27 1.2E-31 215.9 -2.6 314 110-461 51-380 (498)
13 PLN03210 Resistant to P. syrin 99.9 3E-23 6.5E-28 233.5 25.5 307 81-438 590-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 8.1E-23 1.8E-27 230.0 25.4 335 3-389 554-903 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 3.5E-22 7.6E-27 209.0 17.1 262 106-445 202-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 3.1E-26 204.4 17.1 41 357-398 424-464 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 6.6E-20 1.4E-24 193.3 13.1 246 106-416 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.1E-19 2.3E-24 191.7 12.6 246 129-440 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.6E-19 5.6E-24 175.7 3.3 94 185-280 77-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 1.9E-19 4.1E-24 176.7 2.3 264 164-438 22-318 (319)
21 KOG0617 Ras suppressor protein 99.7 5.3E-19 1.2E-23 145.1 -3.7 158 3-178 29-186 (264)
22 KOG0617 Ras suppressor protein 99.7 8.3E-19 1.8E-23 143.9 -5.7 155 236-416 31-186 (264)
23 PLN03150 hypothetical protein; 99.5 2.6E-14 5.6E-19 150.7 10.5 118 356-473 419-538 (623)
24 KOG1909 Ran GTPase-activating 99.3 1.3E-13 2.8E-18 126.6 0.2 89 351-439 209-310 (382)
25 KOG1909 Ran GTPase-activating 99.3 2.1E-13 4.6E-18 125.2 0.6 255 101-415 26-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.7E-18 134.2 -3.8 212 194-437 55-270 (722)
27 PLN03150 hypothetical protein; 99.2 2.6E-11 5.5E-16 128.1 10.5 113 321-444 419-532 (623)
28 KOG0532 Leucine-rich repeat (L 99.2 6.7E-13 1.5E-17 129.2 -2.5 198 110-341 55-254 (722)
29 KOG3207 Beta-tubulin folding c 99.2 3.8E-12 8.2E-17 120.3 1.7 212 213-443 120-342 (505)
30 PF14580 LRR_9: Leucine-rich r 99.2 3.3E-11 7.2E-16 104.1 6.4 105 164-273 41-146 (175)
31 KOG3207 Beta-tubulin folding c 99.2 2.6E-12 5.6E-17 121.4 -0.8 161 29-202 119-284 (505)
32 COG4886 Leucine-rich repeat (L 99.2 3.4E-11 7.3E-16 121.6 7.0 199 192-421 96-295 (394)
33 COG4886 Leucine-rich repeat (L 99.2 6.9E-11 1.5E-15 119.4 8.1 199 169-398 97-296 (394)
34 PF14580 LRR_9: Leucine-rich r 99.1 8.3E-11 1.8E-15 101.7 4.8 126 32-173 20-148 (175)
35 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.9E-16 110.9 -0.1 185 230-443 206-415 (490)
36 KOG1259 Nischarin, modulator o 99.1 4.9E-11 1.1E-15 107.4 2.1 130 188-333 283-412 (490)
37 PF13855 LRR_8: Leucine rich r 99.0 2.3E-10 5E-15 81.3 3.2 61 7-67 1-61 (61)
38 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.3E-15 118.1 0.7 245 164-444 71-322 (414)
39 PF13855 LRR_8: Leucine rich r 99.0 3.3E-10 7.1E-15 80.5 2.9 60 380-439 2-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 99.0 9.8E-10 2.1E-14 118.7 7.8 280 105-417 523-808 (889)
41 KOG0531 Protein phosphatase 1, 98.8 4E-10 8.7E-15 114.0 -1.0 64 354-419 254-321 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.8 6.2E-09 1.4E-13 112.6 7.2 106 31-139 523-629 (889)
43 KOG2120 SCF ubiquitin ligase, 98.7 2.7E-10 5.8E-15 102.7 -5.2 178 7-198 185-372 (419)
44 KOG1859 Leucine-rich repeat pr 98.7 2.5E-10 5.4E-15 114.6 -8.0 129 289-441 163-293 (1096)
45 KOG1859 Leucine-rich repeat pr 98.6 1.2E-09 2.5E-14 109.9 -5.0 126 166-303 165-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.5 2.8E-09 6.1E-14 96.2 -5.0 107 190-300 186-296 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.5 2.6E-08 5.7E-13 88.9 1.0 38 379-416 272-316 (388)
48 COG5238 RNA1 Ran GTPase-activa 98.4 1.1E-07 2.3E-12 85.1 1.2 91 213-303 156-255 (388)
49 KOG2982 Uncharacterized conser 98.3 3.4E-07 7.4E-12 83.0 3.8 188 213-417 70-263 (418)
50 KOG2982 Uncharacterized conser 98.3 2E-07 4.3E-12 84.5 2.2 86 53-139 69-157 (418)
51 KOG4579 Leucine-rich repeat (L 98.3 4.7E-08 1E-12 78.2 -2.8 83 355-440 53-136 (177)
52 KOG4579 Leucine-rich repeat (L 98.2 1.4E-07 3E-12 75.5 -1.6 108 106-229 28-138 (177)
53 PF12799 LRR_4: Leucine Rich r 98.1 2.2E-06 4.8E-11 55.5 3.0 37 7-44 1-37 (44)
54 KOG1644 U2-associated snRNP A' 98.1 5.7E-06 1.2E-10 71.1 5.5 104 32-138 43-150 (233)
55 KOG1644 U2-associated snRNP A' 98.0 9.2E-06 2E-10 69.9 5.6 108 165-277 42-150 (233)
56 PF12799 LRR_4: Leucine Rich r 97.9 9.9E-06 2.2E-10 52.4 3.2 36 380-416 2-37 (44)
57 PF13306 LRR_5: Leucine rich r 97.9 3.7E-05 8.1E-10 64.0 6.7 39 74-114 6-44 (129)
58 PF13306 LRR_5: Leucine rich r 97.9 3E-05 6.6E-10 64.5 6.1 82 161-246 8-89 (129)
59 PRK15386 type III secretion pr 97.8 0.00012 2.6E-09 71.6 8.9 72 213-301 51-123 (426)
60 KOG4341 F-box protein containi 97.7 1.5E-06 3.3E-11 82.6 -4.0 162 210-385 290-458 (483)
61 KOG3665 ZYG-1-like serine/thre 97.6 3.2E-05 7E-10 82.1 3.1 57 29-88 146-203 (699)
62 KOG4341 F-box protein containi 97.6 3.7E-06 8.1E-11 80.0 -3.5 63 352-414 369-437 (483)
63 PRK15386 type III secretion pr 97.6 0.00023 4.9E-09 69.8 8.5 33 103-138 50-82 (426)
64 KOG3665 ZYG-1-like serine/thre 97.4 6.4E-05 1.4E-09 79.9 2.0 111 5-117 146-262 (699)
65 KOG2123 Uncharacterized conser 97.1 4E-05 8.6E-10 69.3 -3.0 105 238-361 19-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00021 4.6E-09 64.4 0.7 107 27-136 39-151 (260)
67 KOG2123 Uncharacterized conser 97.0 5.6E-05 1.2E-09 68.3 -3.4 100 188-296 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 96.9 0.00061 1.3E-08 61.5 2.9 85 237-333 42-129 (260)
69 KOG1947 Leucine rich repeat pr 96.4 0.00036 7.7E-09 72.7 -2.5 237 29-301 186-438 (482)
70 KOG1947 Leucine rich repeat pr 96.3 0.00064 1.4E-08 70.7 -1.2 240 52-333 185-440 (482)
71 KOG4308 LRR-containing protein 96.0 5E-05 1.1E-09 77.1 -11.2 86 354-439 203-302 (478)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.0036 7.8E-08 33.5 0.4 19 9-28 2-20 (22)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0072 1.6E-07 32.3 0.8 22 32-54 1-22 (22)
74 KOG4308 LRR-containing protein 95.1 0.00022 4.8E-09 72.5 -10.2 90 190-280 88-185 (478)
75 PF13504 LRR_7: Leucine rich r 93.5 0.053 1.1E-06 26.8 1.4 15 106-120 2-16 (17)
76 smart00369 LRR_TYP Leucine-ric 92.5 0.11 2.3E-06 29.1 2.0 21 7-27 2-22 (26)
77 smart00370 LRR Leucine-rich re 92.5 0.11 2.3E-06 29.1 2.0 21 7-27 2-22 (26)
78 KOG0473 Leucine-rich repeat pr 92.5 0.0043 9.4E-08 55.0 -5.6 63 352-416 62-124 (326)
79 smart00369 LRR_TYP Leucine-ric 91.8 0.17 3.6E-06 28.2 2.2 22 189-211 2-23 (26)
80 smart00370 LRR Leucine-rich re 91.8 0.17 3.6E-06 28.2 2.2 22 189-211 2-23 (26)
81 KOG3864 Uncharacterized conser 87.0 0.067 1.5E-06 46.7 -2.7 34 104-137 150-185 (221)
82 PF13516 LRR_6: Leucine Rich r 86.5 0.23 5.1E-06 27.0 0.2 14 320-333 2-15 (24)
83 PF12273 RCR: Chitin synthesis 84.4 0.81 1.8E-05 37.8 2.6 12 504-515 4-15 (130)
84 KOG0473 Leucine-rich repeat pr 84.2 0.042 9.1E-07 48.9 -5.3 81 105-200 42-122 (326)
85 smart00365 LRR_SD22 Leucine-ri 84.1 0.92 2E-05 25.3 1.8 14 7-20 2-15 (26)
86 KOG3864 Uncharacterized conser 83.3 0.15 3.3E-06 44.6 -2.3 83 32-114 102-185 (221)
87 PF02439 Adeno_E3_CR2: Adenovi 80.4 2.4 5.3E-05 25.8 2.8 12 504-515 8-19 (38)
88 PF02009 Rifin_STEVOR: Rifin/s 80.2 3.1 6.8E-05 39.5 5.0 16 524-539 280-295 (299)
89 TIGR00864 PCC polycystin catio 79.8 0.97 2.1E-05 54.8 1.8 37 409-445 1-37 (2740)
90 PTZ00370 STEVOR; Provisional 76.7 3.1 6.8E-05 38.5 3.8 21 515-535 272-292 (296)
91 PF01102 Glycophorin_A: Glycop 76.5 3.1 6.7E-05 33.5 3.3 19 501-519 68-86 (122)
92 smart00364 LRR_BAC Leucine-ric 76.1 1.8 3.9E-05 24.1 1.3 17 106-122 3-19 (26)
93 PTZ00046 rifin; Provisional 74.9 4.4 9.6E-05 39.1 4.4 22 519-540 334-355 (358)
94 TIGR01477 RIFIN variant surfac 74.8 4.6 9.9E-05 38.9 4.5 21 520-540 330-350 (353)
95 KOG4242 Predicted myosin-I-bin 74.5 18 0.00038 36.5 8.4 58 381-438 415-479 (553)
96 PF02439 Adeno_E3_CR2: Adenovi 73.2 6.6 0.00014 24.0 3.2 25 499-523 7-31 (38)
97 PF07204 Orthoreo_P10: Orthore 72.4 6.6 0.00014 29.4 3.8 29 498-526 41-69 (98)
98 smart00368 LRR_RI Leucine rich 72.0 3.4 7.3E-05 23.5 1.8 12 8-19 3-14 (28)
99 TIGR00864 PCC polycystin catio 71.1 2 4.3E-05 52.4 1.3 53 433-485 1-72 (2740)
100 TIGR01478 STEVOR variant surfa 70.3 3.6 7.8E-05 38.0 2.6 14 517-530 278-291 (295)
101 KOG4242 Predicted myosin-I-bin 61.8 21 0.00046 35.9 6.1 154 32-198 215-389 (553)
102 PF08693 SKG6: Transmembrane a 61.4 1.9 4E-05 26.8 -0.7 7 504-510 17-23 (40)
103 PF06716 DUF1201: Protein of u 59.3 30 0.00065 22.0 4.3 26 501-526 8-33 (54)
104 PF01299 Lamp: Lysosome-associ 58.3 5.2 0.00011 38.6 1.4 21 504-524 277-297 (306)
105 KOG3763 mRNA export factor TAP 57.9 5.5 0.00012 40.7 1.5 37 353-389 216-254 (585)
106 PF04478 Mid2: Mid2 like cell 56.4 1.7 3.6E-05 36.2 -2.0 26 500-525 52-77 (154)
107 PF06667 PspB: Phage shock pro 51.7 20 0.00044 26.1 3.1 25 505-529 6-30 (75)
108 PF02480 Herpes_gE: Alphaherpe 50.3 5.3 0.00011 40.5 0.0 15 517-531 372-386 (439)
109 PRK00523 hypothetical protein; 50.0 40 0.00087 24.2 4.3 21 508-528 12-32 (72)
110 PF08374 Protocadherin: Protoc 49.3 9.3 0.0002 33.8 1.3 22 500-521 39-60 (221)
111 KOG3763 mRNA export factor TAP 48.0 12 0.00026 38.3 2.1 66 125-203 215-284 (585)
112 TIGR02976 phageshock_pspB phag 47.2 27 0.00059 25.4 3.2 21 509-529 10-30 (75)
113 PRK01844 hypothetical protein; 46.9 47 0.001 23.8 4.2 19 509-527 12-30 (72)
114 PF02009 Rifin_STEVOR: Rifin/s 45.1 42 0.00091 32.1 5.1 15 519-533 278-293 (299)
115 PHA03099 epidermal growth fact 44.3 30 0.00065 27.8 3.3 24 505-528 106-129 (139)
116 PRK14762 membrane protein; Pro 43.9 36 0.00079 18.5 2.5 20 500-519 4-23 (27)
117 PF12273 RCR: Chitin synthesis 42.4 24 0.00051 29.1 2.7 15 502-516 5-19 (130)
118 smart00367 LRR_CC Leucine-rich 41.5 20 0.00043 19.7 1.5 11 31-41 2-12 (26)
119 PRK09458 pspB phage shock prot 40.9 28 0.00061 25.2 2.5 26 505-530 6-31 (75)
120 PF06305 DUF1049: Protein of u 33.2 1.7E+02 0.0037 20.5 5.8 17 500-516 24-40 (68)
121 PF11770 GAPT: GRB2-binding ad 32.8 24 0.00051 29.3 1.2 14 536-549 48-61 (158)
122 PF11337 DUF3139: Protein of u 32.5 91 0.002 23.3 4.3 19 528-546 32-50 (85)
123 PF15102 TMEM154: TMEM154 prot 30.6 19 0.00042 29.8 0.4 14 515-528 72-85 (146)
124 PF11980 DUF3481: Domain of un 30.4 63 0.0014 23.8 2.9 28 498-525 15-43 (87)
125 PF15176 LRR19-TM: Leucine-ric 29.9 1.3E+02 0.0028 23.2 4.5 25 502-526 17-41 (102)
126 PF12191 stn_TNFRSF12A: Tumour 29.2 25 0.00053 28.3 0.7 10 519-528 99-108 (129)
127 TIGR01478 STEVOR variant surfa 26.7 68 0.0015 30.0 3.1 25 504-528 261-286 (295)
128 PF03229 Alpha_GJ: Alphavirus 26.5 2.9E+02 0.0063 21.9 6.0 26 507-532 92-117 (126)
129 PF05283 MGC-24: Multi-glycosy 26.3 64 0.0014 28.3 2.8 23 504-526 163-185 (186)
130 PF00558 Vpu: Vpu protein; In 25.9 63 0.0014 23.9 2.3 11 512-522 15-25 (81)
131 PF06143 Baculo_11_kDa: Baculo 25.4 2.8E+02 0.0061 20.8 5.5 6 540-545 78-83 (84)
132 PF14575 EphA2_TM: Ephrin type 24.1 85 0.0018 22.9 2.7 8 507-514 6-13 (75)
133 PTZ00370 STEVOR; Provisional 22.9 1.2E+02 0.0027 28.5 4.0 25 504-528 257-282 (296)
134 smart00082 LRRCT Leucine rich 21.5 44 0.00095 21.8 0.8 10 460-469 1-10 (51)
135 PF12877 DUF3827: Domain of un 20.9 89 0.0019 32.9 3.0 23 498-520 269-291 (684)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.6e-52 Score=463.19 Aligned_cols=442 Identities=36% Similarity=0.532 Sum_probs=294.6
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
.+++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+.+| ..+..+++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccE
Confidence 46677777777777766667677777777777777777766667777777777777777776665554 34666666666
Q ss_pred EEcccCcccccccCCCccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccCCC------------CCCCc
Q 046908 85 LLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPI------------CSNNN 151 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~------------~~~~~ 151 (551)
|++++|.+...++. .+..+++|++|++++|.+ ..+|..+.++++|++|++++|.+.+..|. +.++.
T Consensus 217 L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 66666665444433 355666666666666666 35556666666666666666666554442 33444
Q ss_pred ccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC
Q 046908 152 FAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF 231 (551)
Q Consensus 152 ~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 231 (551)
+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|++.+..|
T Consensus 296 l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 296 LSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred eccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCC
Confidence 55555544432 5566666666666666666666666666666666666655555433 335556666666665555555
Q ss_pred cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeecccccccc------
Q 046908 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITG------ 304 (551)
Q Consensus 232 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~------ 304 (551)
..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++..+..+ .+++|+.|++++|.+++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~-----~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEG-----EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred hhHhCcCCCCEEECcCCEecc-----cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 555555555555555555544 223334444555555555555444444433 44444444444444431
Q ss_pred ------------CccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 305 ------------DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 305 ------------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
.+.+.+.+|..+ ..++|+.|++++|++.+.+|.. +.++++|+.|++++|.+.+.+|
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~-----------~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRK-----------LGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChh-----------hhhhhccCEEECcCCcceeeCC
Confidence 000011333332 2355666666666665555544 4677889999999999999999
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCcc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 452 (551)
..+.++++|++|++++|.+++.+|..|..+++|+.|++++|++++.+|..+..++.|+++++++|++.+.+|....+.++
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~ 596 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI 596 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCcccCCCCCCCCcc
Q 046908 453 DESSYTGNHELCGSL 467 (551)
Q Consensus 453 ~~~~~~~n~~~c~~~ 467 (551)
....+.||+..|+..
T Consensus 597 ~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 597 NASAVAGNIDLCGGD 611 (968)
T ss_pred ChhhhcCCccccCCc
Confidence 889999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-49 Score=445.40 Aligned_cols=447 Identities=33% Similarity=0.472 Sum_probs=393.0
Q ss_pred CCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 4 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
.++++|++|+|++|++++..|. ..+++|++|+|++|.+++..|..++++++|++|++++|.+.+.+| ..+.++++|+
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~ 191 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLE 191 (968)
T ss_pred ccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCC
Confidence 4789999999999999987775 568999999999999999999999999999999999999987776 4689999999
Q ss_pred EEEcccCcccccccCCCccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccCCC------------CCCC
Q 046908 84 VLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPI------------CSNN 150 (551)
Q Consensus 84 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~------------~~~~ 150 (551)
+|++++|.+....+. .+..+++|++|++++|.+ ..+|..+.++++|++|++++|.+.+..|. +..+
T Consensus 192 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 192 FLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred eeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 999999987666554 688999999999999999 57899999999999999999999877764 5667
Q ss_pred cccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccC
Q 046908 151 NFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI 230 (551)
Q Consensus 151 ~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 230 (551)
.+.+.+|..+.. +++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..
T Consensus 271 ~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 271 KLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred eeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcC
Confidence 788888888775 8999999999999999999999999999999999999997777654 67999999999999999999
Q ss_pred CcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccce
Q 046908 231 FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFF 309 (551)
Q Consensus 231 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~ 309 (551)
|..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~-----~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~----- 418 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTG-----EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG----- 418 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEe-----eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-----
Confidence 9999999999999999999987 455668899999999999999999888877 89999999999998863
Q ss_pred eccCccccccCCCceEEecCCcccccCChhhhhhhchhhHh------------hhccccCceEecCCCcCcccCCccccC
Q 046908 310 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRF------------YSNLKYMAGLDLSSNELSGEIPREIGQ 377 (551)
Q Consensus 310 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 377 (551)
.+|..+..+++|+.|++++|.+.+.+|..+..++++..-. ..+.++|+.|++++|++++..|..+..
T Consensus 419 -~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 419 -ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred -ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhh
Confidence 6777788888888888888888877776554444442111 123467899999999999999999999
Q ss_pred CCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcc
Q 046908 378 LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESS 456 (551)
Q Consensus 378 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~ 456 (551)
+++|++|++++|++++.+|..+.++++|+.|++++|.+++.+|..|..+++|+.|++++|++++..|. ...+..+..++
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999988887 55677888899
Q ss_pred cCCCCCCCCcc
Q 046908 457 YTGNHELCGSL 467 (551)
Q Consensus 457 ~~~n~~~c~~~ 467 (551)
+.+|+..+..|
T Consensus 578 ls~N~l~~~~p 588 (968)
T PLN00113 578 ISHNHLHGSLP 588 (968)
T ss_pred ccCCcceeeCC
Confidence 99999877544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-44 Score=340.42 Aligned_cols=397 Identities=23% Similarity=0.234 Sum_probs=212.7
Q ss_pred CCEEECcCCCCcccCCccCCCC--CCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcC-CCCCCEE
Q 046908 9 LFELDLSSNNFEGHIPQCLNNL--THLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLAN-HSKLEVL 85 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L 85 (551)
-+.||.+++.+..+....+.+. +.-+.|++++|+++.+.+..|.++++|+.+++..|.++ .+|. |.. ..+|+.|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGHLEKL 130 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccceeEE
Confidence 4567777777765444444433 23355888888887777777778888888877777766 3331 222 2235555
Q ss_pred EcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcC
Q 046908 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165 (551)
Q Consensus 86 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~ 165 (551)
+|.+|. +..+..+.+..++.|+.|||+.|.|+.+| ..-|-.-.
T Consensus 131 ~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~------------------------------------~~sfp~~~ 173 (873)
T KOG4194|consen 131 DLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIP------------------------------------KPSFPAKV 173 (873)
T ss_pred eeeccc-cccccHHHHHhHhhhhhhhhhhchhhccc------------------------------------CCCCCCCC
Confidence 554443 22233333444444444444444444444 22222233
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
++++|+|++|.|+....+.|..+.+|..|.|++|+++ .+|...|..+++|+.|+|..|++.-..--+|.++++|+.|.|
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 4555555555555555555555555555555555555 555555555555555555555554443445555555555555
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCce
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHV 324 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~ 324 (551)
..|.+....+++ |..+.++++|+|..|+++.....++ ++++|+.|++++|.|.. .-+.++..+++|++
T Consensus 253 qrN~I~kL~DG~-----Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r------ih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 253 QRNDISKLDDGA-----FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR------IHIDSWSFTQKLKE 321 (873)
T ss_pred hhcCcccccCcc-----eeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe------eecchhhhccccee
Confidence 555555554444 5555555555555555555544444 55555555555555542 22344555555566
Q ss_pred EEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccc---cccC
Q 046908 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPE---SFSN 401 (551)
Q Consensus 325 L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~ 401 (551)
|+|++|+++. ++...|..+..|++|+|++|.+...-...|.++++|++|||++|.++..+.+ .|.+
T Consensus 322 LdLs~N~i~~-----------l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 322 LDLSSNRITR-----------LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred Eecccccccc-----------CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 6666555551 1222244455555555555555544444555555555555555555544332 2555
Q ss_pred CCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 402 LKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 402 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+++|+.|++.+|++..+...+|.+++.|+.|||.+|.+-.+-++......++++.+..-.++|+|.+
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL 457 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence 5555555555555554444455555555555555555554444422222444555555555666654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-42 Score=332.05 Aligned_cols=374 Identities=24% Similarity=0.277 Sum_probs=289.7
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
.-+.||+|+|++..+-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.+. .+..+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 4567999999999888899999999999999999999 78876666778999999999888 566678999999999999
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCC
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQK 166 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 166 (551)
|.|. +..++...|..-.++++|+|++|.|+.+.. .|..+.+|..|.|+.|+++ .+|...|..+++
T Consensus 157 SrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-------------tLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 157 SRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-------------TLPQRSFKRLPK 222 (873)
T ss_pred hhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-------------ccCHHHhhhcch
Confidence 9886 566777778888899999999999987764 6777889999999999998 899988888899
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
|+.|+|..|.+.-...-.|.++++|+.|.|..|.+. .+..++|.++.++++|+|+.|+++.....++.+++.|++|+++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 999999999888665667888888888888888887 7888888888888888888888887777778888888888888
Q ss_pred cccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCc-cccccCCCce
Q 046908 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPY-QINELSNLHV 324 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~l~~L~~ 324 (551)
+|.|..+..++ ++..++|++|+|++|.++...+..| .+..|++|.|++|.++ .+.+ .|..+++|++
T Consensus 302 ~NaI~rih~d~-----WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-------~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 302 YNAIQRIHIDS-----WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-------HLAEGAFVGLSSLHK 369 (873)
T ss_pred hhhhheeecch-----hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-------HHHhhHHHHhhhhhh
Confidence 88888765554 7777888888888888888777777 6777777777777665 2222 2445555555
Q ss_pred EEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCC
Q 046908 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKM 404 (551)
Q Consensus 325 L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 404 (551)
|||+.|.+...+-. ....|.++++|+.|++.+|++..+...+|.+++.
T Consensus 370 LdLr~N~ls~~IED--------------------------------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 370 LDLRSNELSWCIED--------------------------------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred hcCcCCeEEEEEec--------------------------------chhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 55555555433322 1234555666666666666666555566666666
Q ss_pred CCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCC
Q 046908 405 TESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPT 443 (551)
Q Consensus 405 L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 443 (551)
|++|||.+|.|..+.|.+|..+ .|+.|.+..-++.|.+
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 6666666666666666666666 6666666555555444
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.6e-39 Score=295.58 Aligned_cols=424 Identities=26% Similarity=0.358 Sum_probs=318.1
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
..++.+++++|.++ .+.+.+.++..|.+|++++|++. ..|.+++.+..++.++.++|++. .+| ..+..+.+++.++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhhh
Confidence 35778889999888 45556888999999999999988 78888899999999999999887 444 3477788888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQK 166 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 166 (551)
.++|.... .++ .+..+-.|+.++..+|++.++|+.++.+.++..+++.+|.+. .+|+.... ++.
T Consensus 121 ~s~n~~~e-l~~-~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-------------~l~~~~i~-m~~ 184 (565)
T KOG0472|consen 121 CSSNELKE-LPD-SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-------------ALPENHIA-MKR 184 (565)
T ss_pred ccccceee-cCc-hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-------------hCCHHHHH-HHH
Confidence 88876433 333 466777888889999999999999999989999999999887 67776665 778
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
|+.+|...|-+. .+|..++.+.+|..|++..|++. .+|+ |.+|..|.+++++.|.+.....+...+++++..||+.
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence 888888888777 66777888888888888888887 7773 5678888888888888875555555688888888888
Q ss_pred cccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeecccccccc----------------------
Q 046908 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITG---------------------- 304 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~---------------------- 304 (551)
.|+++ ..|....-+.+|++||+++|.+++.++..-++ .|+.|-+.+|.+..
T Consensus 261 dNklk------e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 261 DNKLK------EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred ccccc------cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence 88887 45555778888888888888888877665566 78888888887653
Q ss_pred ------------------------------------CccceeccCccccccCC---CceEEecCCcccccCChhhhhhhc
Q 046908 305 ------------------------------------DNKFFGRIPYQINELSN---LHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 305 ------------------------------------~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
...-...+|..++.... ...++++.|++. ++|..+..+..
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 00000122222211111 445566666665 56655544443
Q ss_pred h-------------hhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCC
Q 046908 346 F-------------LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSH 412 (551)
Q Consensus 346 l-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 412 (551)
+ .......+++|..|+|++|.+. .+|..++.+..|++|+++.|++. ..|.....+..|+.+-.++
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 3 2233356677777888877776 67777777777888888888776 6666666666667776677
Q ss_pred CcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 413 NRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 413 n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
|++..+.|..+..+..|.+||+.+|.+...+|..+.+..++.+.+.|||+..
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence 7887666666899999999999999999988888899999999999999873
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=3.8e-37 Score=297.51 Aligned_cols=372 Identities=22% Similarity=0.328 Sum_probs=243.5
Q ss_pred CCCCCCCCCCEEECcCCCCc-ccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCC
Q 046908 1 LGICNLKNLFELDLSSNNFE-GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANH 79 (551)
Q Consensus 1 ~~l~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 79 (551)
++-+-+|-++-+|+|+|.++ +.+|.....++++++|.|...++. .+|+.++.+.+|++|.+++|++.... +.+..+
T Consensus 1 ~~tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~L 77 (1255)
T KOG0444|consen 1 MSTGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDL 77 (1255)
T ss_pred CCccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccc
Confidence 35667888999999999999 678999999999999999999999 89999999999999999999987432 457778
Q ss_pred CCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChh
Q 046908 80 SKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRN 159 (551)
Q Consensus 80 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~ 159 (551)
+.|+.+.++.|++-....+..+..+..|+.|+|++|++..+|..+..-+++-.|+||+|+|. .+|..
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-------------tIPn~ 144 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-------------TIPNS 144 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-------------cCCch
Confidence 88888888888766665444566777888888888888888888888888888888888887 77887
Q ss_pred HhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcc-cccCCcccCCCC
Q 046908 160 MGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF-FGQIFPKYMNLT 238 (551)
Q Consensus 160 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~ 238 (551)
+|.+++.|-.|||++|++. .+|.....+..|++|+|++|.+. .+.-.-.-.+++|+.|.+++.+- ...+|.++.++.
T Consensus 145 lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 7777777777788777777 45666677777777777777654 22211112245556666655432 234555555666
Q ss_pred CCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccc
Q 046908 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINE 318 (551)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 318 (551)
+|+.+|++.|.+. .+|..+-.+++|+.|++|+|+++......-...+|+.|+++.|+++ .+|.++..
T Consensus 223 NL~dvDlS~N~Lp------~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-------~LP~avcK 289 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP------IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-------VLPDAVCK 289 (1255)
T ss_pred hhhhccccccCCC------cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-------cchHHHhh
Confidence 6666666666554 3444555556666666666655554332223445555555555555 55555555
Q ss_pred cCCCceEEecCCcccc-cCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccc
Q 046908 319 LSNLHVLLLRGNSLQG-HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPE 397 (551)
Q Consensus 319 l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 397 (551)
+++|+.|.+.+|+++- -+|+.+ +.+.+|+.+..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGI-----------GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPe 356 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGI-----------GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPE 356 (1255)
T ss_pred hHHHHHHHhccCcccccCCccch-----------hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echh
Confidence 5555555555555441 134433 22333444455555544 45555555555555555555554 4445
Q ss_pred cccCCCCCCEEeCCCCcCc
Q 046908 398 SFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 398 ~~~~l~~L~~L~l~~n~l~ 416 (551)
++.-++.|+.||+..|.-.
T Consensus 357 aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhcCCcceeeccCCcCc
Confidence 5555555555555555443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=3.8e-36 Score=290.56 Aligned_cols=372 Identities=26% Similarity=0.351 Sum_probs=323.8
Q ss_pred CCCCCCCEEEcccCcCc-cccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCC
Q 046908 28 NNLTHLKVLDISNNQLS-GKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQ 106 (551)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 106 (551)
+-+|-.+-.|+++|.++ +..|.....+++++.|.|....+. .+| +.++.+.+|++|.+++|+++.... -+..++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~vhG--ELs~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISVHG--ELSDLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhhhh--hhccchh
Confidence 45677788999999999 678999999999999999888876 455 568999999999999998765544 3678899
Q ss_pred ccEEEccCCCC--CCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc
Q 046908 107 LKVLKLSDCHL--HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184 (551)
Q Consensus 107 L~~L~l~~n~l--~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 184 (551)
|+.+.+..|++ +.+|..++.+..|+.||||.|++. +.|..+-. ..++..|+|++|.|..+....
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------EvP~~LE~-AKn~iVLNLS~N~IetIPn~l 145 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------EVPTNLEY-AKNSIVLNLSYNNIETIPNSL 145 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-------------hcchhhhh-hcCcEEEEcccCccccCCchH
Confidence 99999999999 789999999999999999999998 78887765 678999999999999766667
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
|.++..|-.||||+|++. .+|..+ ..+..|+.|+|++|.+.......+-.+++|+.|++++.+-+-. .+|.++.
T Consensus 146 finLtDLLfLDLS~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~----N~Ptsld 219 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD----NIPTSLD 219 (1255)
T ss_pred HHhhHhHhhhccccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh----cCCCchh
Confidence 889999999999999998 899887 4589999999999988765556667788999999998765432 5677799
Q ss_pred cCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
.+.+|..+|+|.|.+...+...+.+++|+.|+|++|+|+ .+....+...+|++|+++.|+++ .+|..++.+
T Consensus 220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-------eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL- 290 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-------ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL- 290 (1255)
T ss_pred hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-------eeeccHHHHhhhhhhccccchhc-cchHHHhhh-
Confidence 999999999999999988887779999999999999998 56666677789999999999998 899988665
Q ss_pred chhhHhhhccccCceEecCCCcCcc-cCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCC
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSG-EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL 423 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 423 (551)
+.|+.|.+.+|+++- -+|..++.+.+|+++..++|.+. ..|+.+..+++|+.|.|++|++- .+|+++
T Consensus 291 ----------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 291 ----------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred ----------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence 456889999998873 48999999999999999999997 89999999999999999999998 789999
Q ss_pred CCCCCCCeEECCCCccccCCC
Q 046908 424 TGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 424 ~~l~~L~~l~l~~N~l~~~~~ 444 (551)
.-++.|..||++.|+=.-.+|
T Consensus 359 HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhcCCcceeeccCCcCccCCC
Confidence 999999999999996543444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=285.11 Aligned_cols=401 Identities=26% Similarity=0.363 Sum_probs=271.4
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
+.++..|++|++++|++. ..|.+++.+..++.++.++|+++ .+|.+++.+.+|+.++.++|.+....+ .+..+..+
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~--~i~~~~~l 139 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD--SIGRLLDL 139 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc--hHHHHhhh
Confidence 346777888888888887 67777888888888888888888 777778888888888877777763322 35556666
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhh
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI 162 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~ 162 (551)
+.++..+|++. ..|. .+..+.+|..+++.+|++..+|+..-.++.|++||...|.+. .+|+.++.
T Consensus 140 ~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-------------tlP~~lg~ 204 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-------------TLPPELGG 204 (565)
T ss_pred hhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-------------cCChhhcc
Confidence 66666555422 2222 234444555555555555554444333455555555544444 33333332
Q ss_pred ---------------------hcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEEC
Q 046908 163 ---------------------VLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDL 221 (551)
Q Consensus 163 ---------------------~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 221 (551)
.+..|.++.+..|.+.........++.++..||+++|+++ ++|.++.- +.+|++||+
T Consensus 205 l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDl 282 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDL 282 (565)
T ss_pred hhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcc
Confidence 1445555555555555322223346677777777777776 77766643 666777777
Q ss_pred cCCcccccCCcccCCCCCCCEEecccccccCcCCC------chhh------------------------------Hhhcc
Q 046908 222 SNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDD------ANIL------------------------------VQLSQ 265 (551)
Q Consensus 222 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~------------------------------~~~~~ 265 (551)
++|.+++ .|.+++++ +|+.|-+.+|++..+..+ +.+. .....
T Consensus 283 SNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 283 SNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred cCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 7777764 34566777 777777777766543210 0000 01122
Q ss_pred CCCCCEEECCCCcccccCCCcccc---cccceeecccccccc-----------------CccceeccCccccccCCCceE
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNL---SSVKHLYLQKNAITG-----------------DNKFFGRIPYQINELSNLHVL 325 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~-----------------~~~~~~~~~~~~~~l~~L~~L 325 (551)
+.+.+.|+++.-.++.++...|.. .-....++++|++.. .+...+-+|..++.+++|..|
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence 345667777777777776666622 225666777776652 233334566667888999999
Q ss_pred EecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046908 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 326 ~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
++++|.+. .+|.++ ..+..|+.|+++.|.+. ..|.....+..++.+-.++|++..+.++.+.++.+|
T Consensus 441 ~L~NN~Ln-~LP~e~-----------~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEM-----------GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred ecccchhh-hcchhh-----------hhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 99999887 788775 55667899999999998 889888888888888889999998888889999999
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccc
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
..||+.+|.+. .+|..+.+|++|++|++.+|+|.
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999998 88999999999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-31 Score=269.80 Aligned_cols=421 Identities=24% Similarity=0.273 Sum_probs=254.7
Q ss_pred CCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
++.|+++.|.+....-+...+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. .+| ....++.+|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhheec
Confidence 566667666554322233444445778888877777 67777777777888877777665 344 446677777777776
Q ss_pred cCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCC-------CCCCcccccCChhHh
Q 046908 89 SGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPI-------CSNNNFAGKLPRNMG 161 (551)
Q Consensus 89 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~-------~~~~~~~~~l~~~~~ 161 (551)
+|. .... +..+..+.+|+.|+++.|++..+|..+..++.+..++.++|.....++. +..+.+.+.++..+.
T Consensus 100 ~n~-l~~l-P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~ 177 (1081)
T KOG0618|consen 100 NNR-LQSL-PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY 177 (1081)
T ss_pred cch-hhcC-chhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh
Confidence 554 2222 3346667788888888888888887777777777777777721111110 222222233333332
Q ss_pred hhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCC
Q 046908 162 IVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241 (551)
Q Consensus 162 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 241 (551)
. +.. .|+|++|.+... .+..+.+|+.+....|++. ++.. ..++|+.|+.++|.++...+ -..-.+|+
T Consensus 178 ~-l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~--~p~p~nl~ 244 (1081)
T KOG0618|consen 178 N-LTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDV--HPVPLNLQ 244 (1081)
T ss_pred h-hhe--eeecccchhhhh---hhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeecc--ccccccce
Confidence 2 112 466666665511 2334455555555555554 2221 23456666666666552221 11234677
Q ss_pred EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCC
Q 046908 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSN 321 (551)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~ 321 (551)
+++++.|+++ .+|.+...+.+|+.++..+|.++..+...+...+|+.|....|.+. .+|+...+.+.
T Consensus 245 ~~dis~n~l~------~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-------yip~~le~~~s 311 (1081)
T KOG0618|consen 245 YLDISHNNLS------NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-------YIPPFLEGLKS 311 (1081)
T ss_pred eeecchhhhh------cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-------hCCCcccccce
Confidence 7777777776 4556677777777777777777666665556677777777777776 66666666777
Q ss_pred CceEEecCCcccccCChhhhhhhch---------------------------------------hhHhhhccccCceEec
Q 046908 322 LHVLLLRGNSLQGHIPNELCHVSRF---------------------------------------LHRFYSNLKYMAGLDL 362 (551)
Q Consensus 322 L~~L~l~~n~l~~~~p~~~~~~~~l---------------------------------------~~~~~~~l~~L~~L~L 362 (551)
|++|++..|++. ..|..+.+.... ....+.+...|+.|+|
T Consensus 312 L~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 312 LRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 777777777776 444433221111 1112245556666666
Q ss_pred CCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccC
Q 046908 363 SSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 363 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 442 (551)
++|.+.......+.+++.|++|+||+|+++ .+|+....++.|++|...+|++. ..| .+..++.|+.+|++.|+++..
T Consensus 391 syNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 666665333334556666666666666666 45555666666666666666666 556 677888999999999998765
Q ss_pred CCC-CccCCccCCcccCCCCCCC
Q 046908 443 TPD-KEQFATFDESSYTGNHELC 464 (551)
Q Consensus 443 ~~~-~~~~~~~~~~~~~~n~~~c 464 (551)
.-. ....+.++.++++||.|.-
T Consensus 468 ~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 468 TLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhhCCCcccceeeccCCcccc
Confidence 544 3334788999999999754
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-31 Score=270.24 Aligned_cols=395 Identities=27% Similarity=0.324 Sum_probs=265.0
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
+|+.||+|+|.+. .+|..+..+.+|+.|.++.|.|. ..|.+..++.+|++|+|..|.+. ..| ..+..+.+|+.|++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP-~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLP-ASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCc-hhHHhhhccccccc
Confidence 4899999999887 78888888999999999999888 77788888888888888877665 444 34777888888888
Q ss_pred ccCcccccccCCCccCCCC-------------------ccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccC-CC
Q 046908 88 SSGSNMLQVKTETWHPTSQ-------------------LKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNF-PI 146 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~-------------------L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~-~~ 146 (551)
+.|.+... |. .+..++. ++.+++..|.+ ..++..+..+++ .|||++|.+.... ..
T Consensus 122 S~N~f~~~-Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 122 SFNHFGPI-PL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN 197 (1081)
T ss_pred chhccCCC-ch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence 88864322 11 1122222 44444444444 344444444443 4666666654100 00
Q ss_pred --------CCCCccc-----c---------cCCh---hHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCcc
Q 046908 147 --------CSNNNFA-----G---------KLPR---NMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNF 201 (551)
Q Consensus 147 --------~~~~~~~-----~---------~l~~---~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 201 (551)
+..+.+. | ..|- ...-...+|++++++.|++.+ +|.++..+.+|+.++..+|++
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhH
Confidence 0000000 0 0000 000012356666666666663 346666666666666666666
Q ss_pred ceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCC-CCEEECCCCccc
Q 046908 202 SGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKS-LELIDIFENSLS 280 (551)
Q Consensus 202 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~-L~~L~l~~n~l~ 280 (551)
+ .+|...+. ..+|+.|++..|.+.. +|....++++|++|+|..|.+...++. .+..+.. |..++.+.|++.
T Consensus 277 ~-~lp~ri~~-~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~-----~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 277 V-ALPLRISR-ITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDN-----FLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred H-hhHHHHhh-hhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchH-----HHhhhhHHHHHHhhhhcccc
Confidence 5 66666543 5666666666666653 344455677777777777777644331 1333332 556666666665
Q ss_pred ccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCce
Q 046908 281 GSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAG 359 (551)
Q Consensus 281 ~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~ 359 (551)
..+...- ..+.|+.|++.+|.+++ ..-+.+-++++|+.|+|++|++. .+|... +.++..|++
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd------~c~p~l~~~~hLKVLhLsyNrL~-~fpas~----------~~kle~Lee 411 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTD------SCFPVLVNFKHLKVLHLSYNRLN-SFPASK----------LRKLEELEE 411 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccc------cchhhhccccceeeeeecccccc-cCCHHH----------HhchHHhHH
Confidence 5442222 57889999999998875 44456777899999999999997 666543 678889999
Q ss_pred EecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCcc
Q 046908 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439 (551)
Q Consensus 360 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l 439 (551)
|+||+|+++ .+|.....+..|++|...+|++. ..| .+.+++.|+.+|++.|+++...-..-...+.|++||+++|..
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999999999 78899999999999999999998 677 788999999999999999865433333448999999999974
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-28 Score=224.56 Aligned_cols=243 Identities=21% Similarity=0.231 Sum_probs=190.1
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
.-..++|..|+|+.+.+.+|+.+++||+||||+|.|+.+.|++|.++.+|.+|-+.+|+-...++.+.|.++..++-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 56789999999998899999999999999999999999999999999999999888844444888899999999998888
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCccccc--CCC------------------
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGN--FPI------------------ 146 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~--~~~------------------ 146 (551)
.-|. ..-+..+.|..+++|..|.+-+|.+..++. .+..+..++++.+..|.+... +|-
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 6665 334555678888899999999999888876 777788888888877763211 000
Q ss_pred -----------------------------CCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECc
Q 046908 147 -----------------------------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLS 197 (551)
Q Consensus 147 -----------------------------~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 197 (551)
...+...+..|..-|..+++|+.|+|++|+++.+.+.+|.+...+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 112223345566667777888888888888887777788888888888888
Q ss_pred CCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccC
Q 046908 198 RNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSG 252 (551)
Q Consensus 198 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 252 (551)
.|++. .+...+|.++..|+.|+|++|+++...|.+|..+.+|.+|.+-.|++..
T Consensus 307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 88886 7777788888888888888888887778888888888888887777654
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=5.7e-27 Score=215.87 Aligned_cols=314 Identities=19% Similarity=0.181 Sum_probs=205.1
Q ss_pred EEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCC
Q 046908 110 LKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMK 189 (551)
Q Consensus 110 L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 189 (551)
.+-++-.++.+|..+. ...++++|..|.|+ .+|+..|..+++|+.|||++|.|+.+.|++|.++.
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~-------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~ 115 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQIS-------------SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA 115 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCcc-------------cCChhhccchhhhceecccccchhhcChHhhhhhH
Confidence 3444455556654322 24566777777777 77777777777777777777777777777777777
Q ss_pred CCcEEECcC-CccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCC
Q 046908 190 ELYMQDLSR-NNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKS 268 (551)
Q Consensus 190 ~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 268 (551)
++..|-+.+ |+|+ .+|...|.++.+++.|.+.-|++.-...++|..+++|..|.+..|.+..+.... |..+..
T Consensus 116 ~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~t-----f~~l~~ 189 (498)
T KOG4237|consen 116 SLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGT-----FQGLAA 189 (498)
T ss_pred hhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccc-----ccchhc
Confidence 777655544 7776 777777777777777777777776666677777777777777777776544433 666677
Q ss_pred CCEEECCCCcccccC------------CCcc-cccccceeeccccccccCccceeccCcc-cc-ccCCCceEEecCCccc
Q 046908 269 LELIDIFENSLSGSL------------VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQ-IN-ELSNLHVLLLRGNSLQ 333 (551)
Q Consensus 269 L~~L~l~~n~l~~~~------------~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~-~l~~L~~L~l~~n~l~ 333 (551)
++.+.+..|.+.... +..+ +.....-..+.+.++. .+++. |. ....+.+--.+.+...
T Consensus 190 i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-------q~~a~kf~c~~esl~s~~~~~d~~d 262 (498)
T KOG4237|consen 190 IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-------QEDARKFLCSLESLPSRLSSEDFPD 262 (498)
T ss_pred cchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc-------ccchhhhhhhHHhHHHhhccccCcC
Confidence 777766666532110 0001 1111111222222221 11111 10 0111211111222222
Q ss_pred ccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCC
Q 046908 334 GHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413 (551)
Q Consensus 334 ~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 413 (551)
+..|. ..|..+++|+.|+|++|+++++-+.+|.++..+++|.|..|+|..+....|.++..|+.|+|.+|
T Consensus 263 ~~cP~----------~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 263 SICPA----------KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred CcChH----------HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence 23332 23788999999999999999888889999999999999999998777778899999999999999
Q ss_pred cCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCC
Q 046908 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNH 461 (551)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~ 461 (551)
+|+...|.+|..+.+|.++++-.|++.|.+.-.+...+++.-...|||
T Consensus 333 ~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 333 QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred eeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 999888999999999999999999988777554444444444455555
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3e-23 Score=233.46 Aligned_cols=307 Identities=21% Similarity=0.204 Sum_probs=193.7
Q ss_pred CCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhH
Q 046908 81 KLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNM 160 (551)
Q Consensus 81 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~ 160 (551)
+|+.|.+.++. ...+|.. | ...+|+.|++.+|++..++..+..+++|+.|+++++.... .+|.
T Consensus 590 ~Lr~L~~~~~~-l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~------------~ip~-- 652 (1153)
T PLN03210 590 KLRLLRWDKYP-LRCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK------------EIPD-- 652 (1153)
T ss_pred ccEEEEecCCC-CCCCCCc-C-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC------------cCCc--
Confidence 45556555443 2233322 2 3457777777777777777666777777777777664322 3332
Q ss_pred hhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCC
Q 046908 161 GIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 161 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
...+++|+.|++++|.....+|..+..+++|+.|++++|.....+|... .+++|+.|++++|......|.. .++|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL 727 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNI 727 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCc
Confidence 1225677777777776656677777777777777777764444666544 4677777777777544444432 3567
Q ss_pred CEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccc-------cCCCcc-cccccceeeccccccccCccceecc
Q 046908 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG-------SLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI 312 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~ 312 (551)
+.|++++|.+...+. .+ .+++|+.|++.++.... ..+..+ .+++|+.|++++|... +.+
T Consensus 728 ~~L~L~~n~i~~lP~------~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l------~~l 794 (1153)
T PLN03210 728 SWLDLDETAIEEFPS------NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL------VEL 794 (1153)
T ss_pred CeeecCCCccccccc------cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc------ccc
Confidence 777777777653322 12 45667777666533211 111111 3567888888877533 257
Q ss_pred CccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCC
Q 046908 313 PYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS 392 (551)
Q Consensus 313 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 392 (551)
|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGI------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE 859 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCC------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc
Confidence 7777788888888888776544566532 4567788888877544344432 356788888888887
Q ss_pred CcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCc
Q 046908 393 GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~ 438 (551)
.+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 860 -~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 860 -EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 566777778888888888754444566667777778888877774
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8.1e-23 Score=230.01 Aligned_cols=335 Identities=19% Similarity=0.241 Sum_probs=181.9
Q ss_pred CCCCCCCCEEECcCCC------CcccCCccCCCCC-CCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhh
Q 046908 3 ICNLKNLFELDLSSNN------FEGHIPQCLNNLT-HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINS 75 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 75 (551)
|.++++|+.|.+..+. +...+|+.|..++ +|+.|.+.++.++ .+|..| ...+|+.|++.++.+.. ++ ..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~-~~ 629 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LW-DG 629 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cc-cc
Confidence 5566777777765442 2233455555554 4777777777666 556555 45677777777766552 22 23
Q ss_pred hcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccc
Q 046908 76 LANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAG 154 (551)
Q Consensus 76 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 154 (551)
+..+++|+.|+++++.....++. +..+++|+.|++++|.. ..+|..+..+++|+.|++++|....
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------------ 695 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------------ 695 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------------
Confidence 45667777777776655555542 55666777777777653 6677777777777777777654322
Q ss_pred cCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccc-------
Q 046908 155 KLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFF------- 227 (551)
Q Consensus 155 ~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~------- 227 (551)
.+|..+ .+++|+.|++++|......|.. ..+|+.|++++|.+. .+|... .+++|+.|++.++...
T Consensus 696 ~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 696 ILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred ccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhcccccc
Confidence 334333 2566777777776544444432 346667777777665 566543 3566666666553211
Q ss_pred ccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCcc
Q 046908 228 GQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNK 307 (551)
Q Consensus 228 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 307 (551)
...+..+...++|+.|++++|.... .+|..+..+++|+.|++++|...+..|....+++|+.|++++|..-.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~-----~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~--- 839 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLV-----ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR--- 839 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCcc-----ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc---
Confidence 1111112233556666666654433 34444566666666666665433333333345556666665553210
Q ss_pred ceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcC
Q 046908 308 FFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLS 387 (551)
Q Consensus 308 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 387 (551)
.+|.. .++|+.|++++|.++ .+|.++ ..+++|+.|++++|+--..+|.....+++|+.++++
T Consensus 840 ---~~p~~---~~nL~~L~Ls~n~i~-~iP~si-----------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 840 ---TFPDI---STNISDLNLSRTGIE-EVPWWI-----------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred ---ccccc---ccccCEeECCCCCCc-cChHHH-----------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 22221 235555555555554 444432 344455555555532222344445555555555555
Q ss_pred CC
Q 046908 388 NN 389 (551)
Q Consensus 388 ~n 389 (551)
+|
T Consensus 902 ~C 903 (1153)
T PLN03210 902 DC 903 (1153)
T ss_pred CC
Confidence 55
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=3.5e-22 Score=208.98 Aligned_cols=262 Identities=22% Similarity=0.253 Sum_probs=189.3
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
.-..|+++++.++.+|..+. .+|+.|++++|.++ .+|. .+++|++|++++|.++. +|..
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-------------~LP~----lp~~Lk~LdLs~N~Lts-LP~l- 260 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-------------SLPA----LPPELRTLEVSGNQLTS-LPVL- 260 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-------------CCCC----CCCCCcEEEecCCccCc-ccCc-
Confidence 45678888888888887664 36888888888887 4553 24678888888888874 3432
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.++|+.|++++|.+. .+|. . ..+|+.|++++|+++.. |. ..++|+.|++++|.++.++. +
T Consensus 261 --p~sL~~L~Ls~N~L~-~Lp~-l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~---l------ 320 (788)
T PRK15387 261 --PPGLLELSIFSNPLT-HLPA-L---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---L------ 320 (788)
T ss_pred --ccccceeeccCCchh-hhhh-c---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC---C------
Confidence 467888888888887 5664 2 35688888888888754 32 24678888888888875432 1
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
..+|+.|++++|.+++.+. ...+|+.|++++|+|+ .+|.. .++|+.|++++|++. .+|..
T Consensus 321 p~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~Ls-------~LP~l---p~~L~~L~Ls~N~L~-~LP~l------ 380 (788)
T PRK15387 321 PSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLA-------SLPTL---PSELYKLWAYNNRLT-SLPAL------ 380 (788)
T ss_pred cccccccccccCccccccc---cccccceEecCCCccC-------CCCCC---Ccccceehhhccccc-cCccc------
Confidence 2357778888888876543 1357888888888887 55543 256778888888887 45532
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCC
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTG 425 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 425 (551)
..+|+.|++++|.++ .+|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..
T Consensus 381 --------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~ 443 (788)
T PRK15387 381 --------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIH 443 (788)
T ss_pred --------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhh
Confidence 246788899999888 45543 2578889999999884 4543 346788899999988 67888888
Q ss_pred CCCCCeEECCCCccccCCCC
Q 046908 426 LNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 426 l~~L~~l~l~~N~l~~~~~~ 445 (551)
++.|+.|++++|++++..+.
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCCCeEECCCCCCCchHHH
Confidence 88999999999998876543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.4e-21 Score=204.43 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=20.6
Q ss_pred CceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccc
Q 046908 357 MAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES 398 (551)
Q Consensus 357 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 398 (551)
|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 344555555554 44555555555555555555555444433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=6.6e-20 Score=193.29 Aligned_cols=246 Identities=24% Similarity=0.326 Sum_probs=150.2
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
+.+.|++++++++.+|..+. ++++.|++++|.++ .+|..++ ++|+.|++++|.++. +|..+
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-------------sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-------------SLPENLQ---GNIKTLYANSNQLTS-IPATL 239 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-------------cCChhhc---cCCCEEECCCCcccc-CChhh
Confidence 56778888888877776543 46788888888777 5665553 477888888887773 45444
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
. .+|+.|++++|++. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|.++..+.. +
T Consensus 240 ~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~------l-- 302 (754)
T PRK15370 240 P--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAH------L-- 302 (754)
T ss_pred h--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCccc------c--
Confidence 2 46777888888777 7776653 467777777777764 344332 4677777777777643221 1
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
.++|+.|++++|.++..+... .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+
T Consensus 303 p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-------~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l----- 365 (754)
T PRK15370 303 PSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALT-------SLPASLP--PELQVLDVSKNQIT-VLPETL----- 365 (754)
T ss_pred hhhHHHHHhcCCccccCCccc--cccceeccccCCccc-------cCChhhc--CcccEEECCCCCCC-cCChhh-----
Confidence 135666677777766543322 356667777776665 4444432 56667777776665 444432
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccc----ccCCCCCCEEeCCCCcCc
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES----FSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~ 416 (551)
.+.|+.|++++|.++ .+|..+. .+|+.|++++|+++ .+|.. +..++.+..|++.+|.++
T Consensus 366 --------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 --------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 135666666666666 3444433 24666666666665 33332 233456666666666654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.1e-19 Score=191.72 Aligned_cols=246 Identities=22% Similarity=0.327 Sum_probs=191.3
Q ss_pred CCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChh
Q 046908 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP 208 (551)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 208 (551)
+...|+++++.++ .+|..+ .+.++.|++++|.++. +|..+. .+|+.|++++|+++ .+|..
T Consensus 179 ~~~~L~L~~~~Lt-------------sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~ 238 (754)
T PRK15370 179 NKTELRLKILGLT-------------TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPAT 238 (754)
T ss_pred CceEEEeCCCCcC-------------cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChh
Confidence 5688999999888 666554 3579999999999984 455443 58999999999998 88876
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccc
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFN 288 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 288 (551)
+. ..|+.|++++|.+.. +|..+. .+|+.|++++|.++.++. .+ .++|+.|++++|+++..+...
T Consensus 239 l~---~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~------~l--~~sL~~L~Ls~N~Lt~LP~~l-- 302 (754)
T PRK15370 239 LP---DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKISCLPE------NL--PEELRYLSVYDNSIRTLPAHL-- 302 (754)
T ss_pred hh---ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccCcccc------cc--CCCCcEEECCCCccccCcccc--
Confidence 53 579999999999874 455443 589999999999985432 12 258999999999998765432
Q ss_pred ccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc
Q 046908 289 LSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368 (551)
Q Consensus 289 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 368 (551)
.++|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|+++
T Consensus 303 p~sL~~L~Ls~N~Lt-------~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l-------------~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 303 PSGITHLNVQSNSLT-------ALPETLP--PGLKTLEAGENALT-SLPASL-------------PPELQVLDVSKNQIT 359 (754)
T ss_pred hhhHHHHHhcCCccc-------cCCcccc--ccceeccccCCccc-cCChhh-------------cCcccEEECCCCCCC
Confidence 357999999999987 5565443 68999999999998 466543 257999999999998
Q ss_pred ccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCC----CCCCCCCeEECCCCccc
Q 046908 369 GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL----TGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 369 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~~L~~l~l~~N~l~ 440 (551)
.+|..+. ++|++|++++|+++. +|..+. ..|+.|++++|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 360 -~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 360 -VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5776553 689999999999994 455443 36999999999998 556543 34578899999999986
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.6e-19 Score=175.68 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=40.2
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCC---CCCEEECcCCcccc----cCCcccCCC-CCCCEEecccccccCcCCC
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCV---ALDLFDLSNNNFFG----QIFPKYMNL-THLHWLYLDNNHFSGKMDD 256 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~---~L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~ 256 (551)
+..+++|+.|++++|.+.+..+.. +..+. +|++|++++|++.+ .....+..+ ++|+.|++++|.+++...
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~- 154 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC- 154 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-
Confidence 344445555555555443222211 11122 25555555554432 111223333 555555555555543111
Q ss_pred chhhHhhccCCCCCEEECCCCccc
Q 046908 257 ANILVQLSQLKSLELIDIFENSLS 280 (551)
Q Consensus 257 ~~~~~~~~~l~~L~~L~l~~n~l~ 280 (551)
..+...+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCc
Confidence 123334445555555555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.9e-19 Score=176.66 Aligned_cols=264 Identities=22% Similarity=0.223 Sum_probs=139.1
Q ss_pred cCCccEEEccCCccccc----CCcccccCCCCcEEECcCCccceeCCh------hhhhCCCCCCEEECcCCcccccCCcc
Q 046908 164 LQKLIYLDMPKNIFEGD----IPYSIGEMKELYMQDLSRNNFSGELPQ------PIVSGCVALDLFDLSNNNFFGQIFPK 233 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~ 233 (551)
+..|+.++++++.++.. ++..+...+.++.++++++.+.+ .+. ..+..+++|+.|++++|.+....+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 44455555555554321 23334455566667766665541 111 23344778888888888776544444
Q ss_pred cCCCCC---CCEEecccccccCcCCCchhhHhhccC-CCCCEEECCCCcccccCCC----cc-cccccceeecccccccc
Q 046908 234 YMNLTH---LHWLYLDNNHFSGKMDDANILVQLSQL-KSLELIDIFENSLSGSLVS----SF-NLSSVKHLYLQKNAITG 304 (551)
Q Consensus 234 ~~~l~~---L~~L~L~~n~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~----~~-~~~~L~~L~L~~n~l~~ 304 (551)
+..+.+ |++|++++|.+.... ...+...+..+ ++|+.|++++|.+++.... .+ .+++|++|++++|.+++
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRG-LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHH-HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 444433 888888888776311 11233445566 7778888888777632211 12 44567777777776652
Q ss_pred CccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcccc-----CCC
Q 046908 305 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG-----QLQ 379 (551)
Q Consensus 305 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~ 379 (551)
. ....++..+..+++|++|++++|.+.+.....+. ..+..+++|+.|++++|.+++.....+. ..+
T Consensus 180 ~--~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 180 A--GIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-------ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred H--HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-------HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 1 0112233344455677777777766532222211 1234556666666666666542222211 135
Q ss_pred CCcEEEcCCCCCCCc----ccccccCCCCCCEEeCCCCcCccc----CCCCCCCC-CCCCeEECCCCc
Q 046908 380 NIRALNLSNNFLSGA----IPESFSNLKMTESLDLSHNRLSGH----IPPQLTGL-NFLSNFNVSYNN 438 (551)
Q Consensus 380 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l-~~L~~l~l~~N~ 438 (551)
.|++|++++|.++.. +...+..+++|+.+++++|.++.. ....+... +.|+.+++.+|+
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 666666666666521 223344456666666666666532 22223333 455566655554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.3e-19 Score=145.08 Aligned_cols=158 Identities=25% Similarity=0.415 Sum_probs=122.6
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
+-+.++++.|.||+|+++ ..|..++.+.+|+.|++++|+|. .+|.+++.+++|+.|+++-|.+. ..| ..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lp-rgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILP-RGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCc-cccCCCchh
Confidence 445677888999999998 55666889999999999999999 88888999999999998887765 333 457888888
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhh
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI 162 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~ 162 (551)
+.|++.+|+......++.|..++.|+.|.+++|.+..+|..++++++|+.|.+.+|++- ++|.+++.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-------------~lpkeig~ 171 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-------------SLPKEIGD 171 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-------------hCcHHHHH
Confidence 88888888877777777777777888888888888888887888888888877777776 66666664
Q ss_pred hcCCccEEEccCCccc
Q 046908 163 VLQKLIYLDMPKNIFE 178 (551)
Q Consensus 163 ~l~~L~~L~L~~n~~~ 178 (551)
++.|++|.+.+|+++
T Consensus 172 -lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 172 -LTRLRELHIQGNRLT 186 (264)
T ss_pred -HHHHHHHhcccceee
Confidence 555666666666555
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=8.3e-19 Score=143.94 Aligned_cols=155 Identities=25% Similarity=0.434 Sum_probs=86.5
Q ss_pred CCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcc
Q 046908 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQ 315 (551)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (551)
.+.+++.|.+++|+++.+++ ....+.+|+.|++++|++.+.+...-.+++|+.|++.-|++. ..|.+
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp------nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-------~lprg 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP------NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-------ILPRG 97 (264)
T ss_pred chhhhhhhhcccCceeecCC------cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-------cCccc
Confidence 45556666666666663333 255666666666666666665555446666666666666655 55666
Q ss_pred ccccCCCceEEecCCcccc-cCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCc
Q 046908 316 INELSNLHVLLLRGNSLQG-HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA 394 (551)
Q Consensus 316 ~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 394 (551)
|+.+|.|+.||+++|++.. .+|.. |-.+..|+.|+|++|.+. .+|...+++++|+.|.+..|.+. .
T Consensus 98 fgs~p~levldltynnl~e~~lpgn-----------ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGN-----------FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred cCCCchhhhhhccccccccccCCcc-----------hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-h
Confidence 6666666666666665542 22322 233344455555555554 45555555555555555555554 3
Q ss_pred ccccccCCCCCCEEeCCCCcCc
Q 046908 395 IPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 395 ~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
.|..++.+..|++|.+.+|+++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred CcHHHHHHHHHHHHhcccceee
Confidence 4444555555555555555555
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=2.6e-14 Score=150.68 Aligned_cols=118 Identities=35% Similarity=0.582 Sum_probs=104.0
Q ss_pred cCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECC
Q 046908 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVS 435 (551)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 435 (551)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCC--ccCCccCCcccCCCCCCCCccccCCCC
Q 046908 436 YNNLSGPTPDK--EQFATFDESSYTGNHELCGSLIRKKCS 473 (551)
Q Consensus 436 ~N~l~~~~~~~--~~~~~~~~~~~~~n~~~c~~~~~~~c~ 473 (551)
+|+++|.+|.. ........+.+.+|+..|+.+....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999998873 222344567889999999876555564
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-13 Score=126.63 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=44.6
Q ss_pred hhccccCceEecCCCcCccc----CCccccCCCCCcEEEcCCCCCCCccccc----c-cCCCCCCEEeCCCCcCccc---
Q 046908 351 YSNLKYMAGLDLSSNELSGE----IPREIGQLQNIRALNLSNNFLSGAIPES----F-SNLKMTESLDLSHNRLSGH--- 418 (551)
Q Consensus 351 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~~~--- 418 (551)
|..++.|+.|||.+|-++.. +...++.+++|++|++++|.+...-..+ + ...|+|+.|.+.+|.|+..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 44555555555555555421 2233444555666666666554322111 1 2356666666666666531
Q ss_pred -CCCCCCCCCCCCeEECCCCcc
Q 046908 419 -IPPQLTGLNFLSNFNVSYNNL 439 (551)
Q Consensus 419 -~p~~~~~l~~L~~l~l~~N~l 439 (551)
+-..+...+.|..|+|++|.+
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 112233355666666666666
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=2.1e-13 Score=125.22 Aligned_cols=255 Identities=20% Similarity=0.239 Sum_probs=117.1
Q ss_pred ccCCCCccEEEccCCCCC-----CCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCC
Q 046908 101 WHPTSQLKVLKLSDCHLH-----VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN 175 (551)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n 175 (551)
..+...++.+++++|.++ .+...+.+.++|+..++|+-- +|.. ...+|..+..
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~--------~~Ei~e~L~~------------- 83 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRL--------KDEIPEALKM------------- 83 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCc--------HHHHHHHHHH-------------
Confidence 345567888888888873 344556667778877777531 1111 1133332211
Q ss_pred cccccCCcccccCCCCcEEECcCCccceeCCh---hhhhCCCCCCEEECcCCcccccCC-------------cccCCCCC
Q 046908 176 IFEGDIPYSIGEMKELYMQDLSRNNFSGELPQ---PIVSGCVALDLFDLSNNNFFGQIF-------------PKYMNLTH 239 (551)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~ 239 (551)
+..++..+++|+++|||+|.+....+. .+.+.+..|++|.|.+|.+....- .....-+.
T Consensus 84 -----l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 84 -----LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred -----HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 111222333444444444444322111 112234444444444444332111 11223345
Q ss_pred CCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcccccc
Q 046908 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINEL 319 (551)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l 319 (551)
|+.+..++|++.... ...+...|...+.|+.+.++.|.+...... .+..++.++
T Consensus 159 Lrv~i~~rNrlen~g-a~~~A~~~~~~~~leevr~~qN~I~~eG~~-------------------------al~eal~~~ 212 (382)
T KOG1909|consen 159 LRVFICGRNRLENGG-ATALAEAFQSHPTLEEVRLSQNGIRPEGVT-------------------------ALAEALEHC 212 (382)
T ss_pred eEEEEeecccccccc-HHHHHHHHHhccccceEEEecccccCchhH-------------------------HHHHHHHhC
Confidence 555555555553221 113444455555555555555544322111 122334455
Q ss_pred CCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccc-----cCCCCCcEEEcCCCCCCCc
Q 046908 320 SNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-----GQLQNIRALNLSNNFLSGA 394 (551)
Q Consensus 320 ~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~ 394 (551)
++|++|||++|.++......++ ..+..++.|++|++++|.+......+| ...++|++|.+.+|.|+..
T Consensus 213 ~~LevLdl~DNtft~egs~~La-------kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALA-------KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred CcceeeecccchhhhHHHHHHH-------HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 5555555555555422222221 123445555566666655543332222 2245666666666666532
Q ss_pred ----ccccccCCCCCCEEeCCCCcC
Q 046908 395 ----IPESFSNLKMTESLDLSHNRL 415 (551)
Q Consensus 395 ----~~~~~~~l~~L~~L~l~~n~l 415 (551)
+.......+.|+.|+|++|++
T Consensus 286 a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 286 AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHhcchhhHHhcCCcccc
Confidence 112234456667777777766
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.2e-13 Score=134.21 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=138.5
Q ss_pred EECcCCccceeCChhhhh-CCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEE
Q 046908 194 QDLSRNNFSGELPQPIVS-GCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELI 272 (551)
Q Consensus 194 L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 272 (551)
|.|++-++. ++|...+. .+..-...|++.|++. ..|..+..+..|+.+.+..|.+. .+|.....+..|.++
T Consensus 55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r------~ip~~i~~L~~lt~l 126 (722)
T KOG0532|consen 55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR------TIPEAICNLEALTFL 126 (722)
T ss_pred cccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce------ecchhhhhhhHHHHh
Confidence 344444554 55554432 2334456677777776 34566666777777777777776 455557777778888
Q ss_pred ECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhh
Q 046908 273 DIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYS 352 (551)
Q Consensus 273 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~ 352 (551)
|++.|+++..+...+.+ -|+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..+ .
T Consensus 127 ~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~-------~lp~~ig~~~tl~~ld~s~nei~-slpsql-----------~ 186 (722)
T KOG0532|consen 127 DLSSNQLSHLPDGLCDL-PLKVLIVSNNKLT-------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL-----------G 186 (722)
T ss_pred hhccchhhcCChhhhcC-cceeEEEecCccc-------cCCcccccchhHHHhhhhhhhhh-hchHHh-----------h
Confidence 88888777766665533 3677777777777 67777777777777777777776 556554 4
Q ss_pred ccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC---CCC
Q 046908 353 NLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL---NFL 429 (551)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L 429 (551)
++.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++ .+|-.|..|+.|++|-|.+|.+. ..|..+.-. .-.
T Consensus 187 ~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIF 262 (722)
T ss_pred hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeee
Confidence 5556677777777776 556666643 4777777777777 66777777777777777777776 444433221 224
Q ss_pred CeEECCCC
Q 046908 430 SNFNVSYN 437 (551)
Q Consensus 430 ~~l~l~~N 437 (551)
++|+.+-+
T Consensus 263 KyL~~qA~ 270 (722)
T KOG0532|consen 263 KYLSTQAC 270 (722)
T ss_pred eeecchhc
Confidence 45555555
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=2.6e-11 Score=128.13 Aligned_cols=113 Identities=35% Similarity=0.569 Sum_probs=101.7
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
.++.|+|++|.+.+.+|..+ ..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-----------~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-----------SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHH-----------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 37889999999999999875 6678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCC-CCCCeEECCCCccccCCC
Q 046908 401 NLKMTESLDLSHNRLSGHIPPQLTGL-NFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~ 444 (551)
++++|+.|+|++|++++.+|..+... ..+..+++.+|+..|..|
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999999887764 467789999998766544
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=6.7e-13 Score=129.19 Aligned_cols=198 Identities=27% Similarity=0.361 Sum_probs=150.9
Q ss_pred EEccCCCCCCCchhh--hCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccccc
Q 046908 110 LKLSDCHLHVIPSFL--LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGE 187 (551)
Q Consensus 110 L~l~~n~l~~l~~~~--~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (551)
|.|++-.+..+|... ..+..-...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|.++.+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-------------elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~ 119 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-------------ELPEEACA-FVSLESLILYHNCIR-TIPEAICN 119 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-------------cCchHHHH-HHHHHHHHHHhccce-ecchhhhh
Confidence 445555555555322 33444566788888877 77776665 567888888888887 67778888
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+..|+.+|++.|++. .+|..++. --|+.|.+++|+++ ..|..++..+.|..|+.+.|.+. .++..+.++.
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC~--lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~------slpsql~~l~ 189 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLCD--LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------SLPSQLGYLT 189 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhhc--CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh------hchHHhhhHH
Confidence 888899999999887 78877753 34888888888886 45666778888888999988887 5666788888
Q ss_pred CCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhh
Q 046908 268 SLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 341 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 341 (551)
+|+.|.+..|.+...++... .-.|..||++.|+++ .+|..|.+|+.|++|-|.+|++. .-|..+|
T Consensus 190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-------~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-------YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-------ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 89888888888887776654 456888899999888 88888999999999999999887 6666654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.8e-12 Score=120.31 Aligned_cols=212 Identities=25% Similarity=0.250 Sum_probs=120.0
Q ss_pred CCCCCEEECcCCcccccCC-cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cc
Q 046908 213 CVALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NL 289 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~ 289 (551)
+.+|+.+.|.+..+..... .....|++++.||++.|-+.... .+..-...+++|+.|+++.|++........ .+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~---~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF---PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH---HHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4445555555554432211 23345666666666666554322 223334556677777777776654333332 56
Q ss_pred cccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcc
Q 046908 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG 369 (551)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~ 369 (551)
+.|+.|.|+.|.++- ..+......+|+|+.|++..|.....-. ..+..+..|++|||++|++.+
T Consensus 197 ~~lK~L~l~~CGls~-----k~V~~~~~~fPsl~~L~L~~N~~~~~~~-----------~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW-----KDVQWILLTFPSLEVLYLEANEIILIKA-----------TSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred hhhheEEeccCCCCH-----HHHHHHHHhCCcHHHhhhhcccccceec-----------chhhhhhHHhhccccCCcccc
Confidence 777777777776651 1222334456777777777774211100 012445567778888877763
Q ss_pred cC-CccccCCCCCcEEEcCCCCCCCcc-ccc-----ccCCCCCCEEeCCCCcCccc-CCCCCCCCCCCCeEECCCCcccc
Q 046908 370 EI-PREIGQLQNIRALNLSNNFLSGAI-PES-----FSNLKMTESLDLSHNRLSGH-IPPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 370 ~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
.. ....+.++.|+.|+++.+.+.++- |+. ...+++|+.|++++|++... .-..+..+++|+.+.+..|++..
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 21 134566778888888888776542 222 34577888888888888532 11234455667777777777764
Q ss_pred CC
Q 046908 442 PT 443 (551)
Q Consensus 442 ~~ 443 (551)
.-
T Consensus 341 e~ 342 (505)
T KOG3207|consen 341 ET 342 (505)
T ss_pred cc
Confidence 43
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=3.3e-11 Score=104.12 Aligned_cols=105 Identities=27% Similarity=0.292 Sum_probs=38.2
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccC-CcccCCCCCCCE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI-FPKYMNLTHLHW 242 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 242 (551)
+.+|+.|++++|.+.... .+..+++|+.|++++|+++ .++..+...+++|+.|++++|++.... -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 445555555555555332 3555677777777777776 555444344667777777777665422 234455666666
Q ss_pred EecccccccCcCCCchhhHhhccCCCCCEEE
Q 046908 243 LYLDNNHFSGKMDDANILVQLSQLKSLELID 273 (551)
Q Consensus 243 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 273 (551)
|++.+|++..... .-...+..+|+|+.||
T Consensus 118 L~L~~NPv~~~~~--YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 118 LSLEGNPVCEKKN--YRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TT-GGGGSTT--HHHHHHHH-TT-SEET
T ss_pred eeccCCcccchhh--HHHHHHHHcChhheeC
Confidence 6666666654322 2233345566666655
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.6e-12 Score=121.41 Aligned_cols=161 Identities=24% Similarity=0.220 Sum_probs=76.5
Q ss_pred CCCCCCEEEcccCcCccccc-hhccCCCCCCEeeCCCCccccccChh-hhcCCCCCCEEEcccCcccccccCCCccCCCC
Q 046908 29 NLTHLKVLDISNNQLSGKVP-STLTNLTSLEYLDRFSINFQGTISIN-SLANHSKLEVLLISSGSNMLQVKTETWHPTSQ 106 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 106 (551)
++.+|+...|.+..+..... +....+++++.|||++|-+....+.- ....+++|+.|+++.|....-.....-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44555555555555442111 23445555555555555544333221 12344555555555544332222222224456
Q ss_pred ccEEEccCCCCC--CCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccC-Cc
Q 046908 107 LKVLKLSDCHLH--VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI-PY 183 (551)
Q Consensus 107 L~~L~l~~n~l~--~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~-~~ 183 (551)
|+.|.++.|+++ .+-..+..+++|+.|+|..|..... ...+.. .+..|+.|||++|.+.... -.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----------~~~~~~---i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----------KATSTK---ILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----------ecchhh---hhhHHhhccccCCccccccccc
Confidence 777777777773 3334455566666666666632100 011111 1345666666666654322 12
Q ss_pred ccccCCCCcEEECcCCccc
Q 046908 184 SIGEMKELYMQDLSRNNFS 202 (551)
Q Consensus 184 ~~~~l~~L~~L~L~~n~l~ 202 (551)
..+.++.|+.|+++.+.+.
T Consensus 266 ~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred ccccccchhhhhccccCcc
Confidence 3344555555555555554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.4e-11 Score=121.63 Aligned_cols=199 Identities=34% Similarity=0.433 Sum_probs=109.0
Q ss_pred cEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCC-CCCEEecccccccCcCCCchhhHhhccCCCCC
Q 046908 192 YMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT-HLHWLYLDNNHFSGKMDDANILVQLSQLKSLE 270 (551)
Q Consensus 192 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ 270 (551)
..++++.+.+...+.. . ...+.++.|++.+|.++.+. ....... +|+.|++++|.+.. ++.....+++|+
T Consensus 96 ~~l~~~~~~~~~~~~~-~-~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~------l~~~~~~l~~L~ 166 (394)
T COG4886 96 PSLDLNLNRLRSNISE-L-LELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIES------LPSPLRNLPNLK 166 (394)
T ss_pred ceeeccccccccCchh-h-hcccceeEEecCCcccccCc-cccccchhhcccccccccchhh------hhhhhhcccccc
Confidence 3566666666312222 2 12456777777777776443 2333342 67777777777763 323466677777
Q ss_pred EEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHh
Q 046908 271 LIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRF 350 (551)
Q Consensus 271 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~ 350 (551)
.|++++|.++.........+.|+.|++++|+++ .+|........|+++.+++|++. ..+..
T Consensus 167 ~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-------~l~~~~~~~~~L~~l~~~~N~~~-~~~~~----------- 227 (394)
T COG4886 167 NLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-------DLPPEIELLSALEELDLSNNSII-ELLSS----------- 227 (394)
T ss_pred ccccCCchhhhhhhhhhhhhhhhheeccCCccc-------cCchhhhhhhhhhhhhhcCCcce-ecchh-----------
Confidence 777777777665554335666666666666665 45554444445666666666432 22222
Q ss_pred hhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCC
Q 046908 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP 421 (551)
Q Consensus 351 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 421 (551)
+..+.++..+.+.+|++. ..+..+..++++++|++++|.++.... +..+.+|+.|++++|.+....|.
T Consensus 228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 133444555555555554 224445555556666666666553322 55555566666666655544433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=6.9e-11 Score=119.37 Aligned_cols=199 Identities=33% Similarity=0.399 Sum_probs=110.4
Q ss_pred EEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCC-CCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 169 YLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCV-ALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 169 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
.+++..+.+... ......++.++.|++.+|.++ .++.... ... +|+.|++++|.+... +..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccc-cchhhcccccccccchhhh-hhhhhccccccccccCC
Confidence 455555555321 223334456666666666666 5555432 132 666666666666532 23455666666666666
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEe
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLL 327 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l 327 (551)
|++.. ++......++|+.|++++|++...+...-....|+++.+++|.+. ..+..+..+.++..+.+
T Consensus 173 N~l~~------l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-------~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 173 NDLSD------LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-------ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred chhhh------hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-------ecchhhhhccccccccc
Confidence 66653 222233566666666666666665543222344666666666432 44555556666666666
Q ss_pred cCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccc
Q 046908 328 RGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES 398 (551)
Q Consensus 328 ~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 398 (551)
.+|++.. .+.. ...+++++.|++++|.++ .++. +..+.+++.|++++|.++...+..
T Consensus 240 ~~n~~~~-~~~~-----------~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 240 SNNKLED-LPES-----------IGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred CCceeee-ccch-----------hccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 6666552 1222 244555666666666666 2332 566666666666666666555443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=8.3e-11 Score=101.67 Aligned_cols=126 Identities=23% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCCEEEcccCcCccccchhcc-CCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEE
Q 046908 32 HLKVLDISNNQLSGKVPSTLT-NLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVL 110 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 110 (551)
++++|+|++|.|+.+. .++ .+.+|+.|++++|.+... +.+..+++|++|++++|.+.. +.......+++|++|
T Consensus 20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--chhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 4444444444444221 122 234444444444444422 123444444455554444322 111111235566666
Q ss_pred EccCCCCCCCc--hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEcc
Q 046908 111 KLSDCHLHVIP--SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMP 173 (551)
Q Consensus 111 ~l~~n~l~~l~--~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~ 173 (551)
++++|++..+. ..+..+++|+.|++.+|+++.. + .....+...+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~---------~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K---------NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-T---------THHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-h---------hHHHHHHHHcChhheeCCE
Confidence 66666664332 3455667777777777766521 0 1223444457777777754
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.3e-11 Score=110.95 Aligned_cols=185 Identities=23% Similarity=0.230 Sum_probs=105.6
Q ss_pred CCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCC-----------------------Cc
Q 046908 230 IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV-----------------------SS 286 (551)
Q Consensus 230 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~ 286 (551)
.+..+.-+.+|+++.++.+.-..+..- ...-+.|+++...+..++.... ..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~------~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~ 279 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDI------ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVS 279 (490)
T ss_pred cccchHHhhhhheeeeeccchhheece------eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEe
Confidence 334445567788888877654432211 2233566666665544332110 00
Q ss_pred c-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCC
Q 046908 287 F-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSN 365 (551)
Q Consensus 287 ~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n 365 (551)
. ....|++++|++|.|+ .+.++..-.|.++.|++++|.+. .+.. +..+++|+.||||+|
T Consensus 280 ~dTWq~LtelDLS~N~I~-------~iDESvKL~Pkir~L~lS~N~i~-~v~n------------La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-------QIDESVKLAPKLRRLILSQNRIR-TVQN------------LAELPQLQLLDLSGN 339 (490)
T ss_pred cchHhhhhhccccccchh-------hhhhhhhhccceeEEecccccee-eehh------------hhhcccceEeecccc
Confidence 1 2455667777777666 45555555667777777777665 2111 244566677777777
Q ss_pred cCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccC-CCCCCCCCCCCeEECCCCccccCC
Q 046908 366 ELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI-PPQLTGLNFLSNFNVSYNNLSGPT 443 (551)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~ 443 (551)
.++ .+.++-..+.+.++|.|++|.|... ..+..+-+|..||+++|+|.... -..+.++|.|+.+.|.+|++.+.+
T Consensus 340 ~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 340 LLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 666 4444445566667777777766522 33555666677777777765322 235666677777777777776544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4.9e-11 Score=107.40 Aligned_cols=130 Identities=24% Similarity=0.217 Sum_probs=65.8
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
.+.|+++||++|.|+ .+.+.+ .-.+.++.|++++|.+.... .++.+++|+.||+++|.++.. -.+-..+.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~------~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC------VGWHLKLG 352 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh------hhhHhhhc
Confidence 344555555555555 444443 23455555555555554332 245555566666665555421 12233455
Q ss_pred CCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCccc
Q 046908 268 SLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQ 333 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 333 (551)
+.+.|.+++|.+..... .-.+-+|..|++++|+|...+ --..++.+|.|+.+.+.+|++.
T Consensus 353 NIKtL~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ld-----eV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELD-----EVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHhhhhh-hHhhhhheeccccccchhhHH-----HhcccccccHHHHHhhcCCCcc
Confidence 55555565555443211 013445566666666554110 1123566677777777777765
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.3e-10 Score=81.26 Aligned_cols=61 Identities=41% Similarity=0.606 Sum_probs=55.2
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCcc
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~ 67 (551)
|+|++|++++|+++.+.+++|.++++|++|++++|.++...+++|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 6789999999999988888999999999999999999988888999999999999998864
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=1.1e-10 Score=118.09 Aligned_cols=245 Identities=27% Similarity=0.279 Sum_probs=164.9
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
+..++.+++..|.+.. .-..+..+++|+.+++.+|++. .+... ...+++|++|++++|.++... .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence 4455566666666653 2233566778888888888876 44432 234778888888888887643 35567778888
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCC-cccccccceeeccccccccCccceeccCccccccCCC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVS-SFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L 322 (551)
++++|.++.... +..++.|+.+++++|.+...... .-.+.+++.+++.+|.+.. ..++..+..+
T Consensus 146 ~l~~N~i~~~~~-------~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--------i~~~~~~~~l 210 (414)
T KOG0531|consen 146 NLSGNLISDISG-------LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE--------IEGLDLLKKL 210 (414)
T ss_pred eeccCcchhccC-------CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc--------ccchHHHHHH
Confidence 888888865432 55688888888888888876662 1267888888999887752 2334445556
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccc--cCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK--YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
..+++..|.++..-+. ..+. .|+.+++++|.+. ..+..+..+..+..|++.+|++... ..+.
T Consensus 211 ~~~~l~~n~i~~~~~l-------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~ 274 (414)
T KOG0531|consen 211 VLLSLLDNKISKLEGL-------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLE 274 (414)
T ss_pred HHhhcccccceeccCc-------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cccc
Confidence 6668888887632221 1122 2788899999887 4446677788899999999988744 3355
Q ss_pred CCCCCCEEeCCCCcCccc---CCCC-CCCCCCCCeEECCCCccccCCC
Q 046908 401 NLKMTESLDLSHNRLSGH---IPPQ-LTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~---~p~~-~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..+.+..+....|.+... .... ....+.++.+.+.+|+.....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 667778888888877622 1221 4555778888888888766544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=3.3e-10 Score=80.47 Aligned_cols=60 Identities=45% Similarity=0.608 Sum_probs=37.1
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCcc
Q 046908 380 NIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439 (551)
Q Consensus 380 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l 439 (551)
+|++|++++|+++.+.++.|.++++|++|++++|+++...|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555666666666666666666655555666666666666666653
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=9.8e-10 Score=118.73 Aligned_cols=280 Identities=20% Similarity=0.205 Sum_probs=172.2
Q ss_pred CCccEEEccCCCCCCCchhhhCCCCCCEEEccCCc--ccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNK--VVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
...+.+.+-+|.+..++... .+++|++|-+.+|. +. .++..+|..++.|+.|||++|.--+.+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~-------------~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLL-------------EISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhh-------------hcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 46777777777776665433 33478888888885 44 6778888889999999999988878899
Q ss_pred cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHh
Q 046908 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQ 262 (551)
Q Consensus 183 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 262 (551)
..++++-+|++|++++..+. .+|..+ ..+..|.+|++..+.-....+.....+++|++|.+....... +......
T Consensus 589 ~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~e 663 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKE 663 (889)
T ss_pred hHHhhhhhhhcccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHh
Confidence 99999999999999999998 899887 458899999999887655567777779999999997765221 1133344
Q ss_pred hccCCCCCEEECCCCcccccCCCcccccccc----eeeccccccccCccceeccCccccccCCCceEEecCCcccccCCh
Q 046908 263 LSQLKSLELIDIFENSLSGSLVSSFNLSSVK----HLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 338 (551)
Q Consensus 263 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 338 (551)
+..+.+|+.+....... ........+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+......
T Consensus 664 l~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-------~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 664 LENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-------TLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred hhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-------eeecccccccCcceEEEEcCCCchhhcc
Confidence 56666666666644433 1111111233333 3333332222 4556677889999999999887632221
Q ss_pred hhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcc
Q 046908 339 ELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG 417 (551)
Q Consensus 339 ~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 417 (551)
..+..... . ..+++..+...++... ..+......++|+.|.+..+.....+......+..++.+-+..+.+.+
T Consensus 736 ~~~~~~~~---~--~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 736 WEESLIVL---L--CFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cccccchh---h--hHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 11111000 0 0112222222222111 111122234677777777776655544444555555555555555543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=4e-10 Score=113.96 Aligned_cols=64 Identities=30% Similarity=0.270 Sum_probs=28.5
Q ss_pred cccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCc---cccc-ccCCCCCCEEeCCCCcCcccC
Q 046908 354 LKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA---IPES-FSNLKMTESLDLSHNRLSGHI 419 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~l~~n~l~~~~ 419 (551)
+..+..|++.+|.+... ..+...+.+..+....|.+... .... ....+.++.+.+..|.+....
T Consensus 254 ~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 34444445544444311 1122334444445555544311 1111 344566666666666665443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=6.2e-09 Score=112.59 Aligned_cols=106 Identities=22% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCCEEEcccCcCccccchhccCCCCCCEeeCCCCcc-ccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccE
Q 046908 31 THLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF-QGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKV 109 (551)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 109 (551)
...++..+-+|.+. ..+... ..++|++|-+..|.. ...++...|..++.|+.||+++|.....+|. .+..+-+||+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhc
Confidence 55566666666655 333322 223566665555541 2234444455566666666655443333333 3444555555
Q ss_pred EEccCCCCCCCchhhhCCCCCCEEEccCCc
Q 046908 110 LKLSDCHLHVIPSFLLQHYHLIFLDLSNNK 139 (551)
Q Consensus 110 L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~ 139 (551)
|+++++.+..+|..+.++..|.+|++..+.
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred ccccCCCccccchHHHHHHhhheecccccc
Confidence 555555555555555555555555555443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.7e-10 Score=102.67 Aligned_cols=178 Identities=19% Similarity=0.152 Sum_probs=120.1
Q ss_pred CCCCEEECcCCCCcc-cCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccC-hhhhcCCCCCCE
Q 046908 7 KNLFELDLSSNNFEG-HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTIS-INSLANHSKLEV 84 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~ 84 (551)
..|++||||+..|+. ..-..++.+.+|+.|+|.++++.+.+...+.+-.+|+.|+++.++-..... .-.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358999999988873 233457789999999999999999888999999999999998865332322 234678999999
Q ss_pred EEcccCcccccccCCCccC-CCCccEEEccCCCC----CCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChh
Q 046908 85 LLISSGSNMLQVKTETWHP-TSQLKVLKLSDCHL----HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRN 159 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l----~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~ 159 (551)
|+++++............. -.+|+.|+++++.- +.+..-..++++|.+||||+|..-. ...-..
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~-----------~~~~~~ 333 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK-----------NDCFQE 333 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-----------chHHHH
Confidence 9999998665443222222 23788899988763 3344455678888889988874320 011122
Q ss_pred HhhhcCCccEEEccCCcccccCCcc---cccCCCCcEEECcC
Q 046908 160 MGIVLQKLIYLDMPKNIFEGDIPYS---IGEMKELYMQDLSR 198 (551)
Q Consensus 160 ~~~~l~~L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~L~~ 198 (551)
++ .++.|++|.++.|-. ++|.. +...+.|.+||+-+
T Consensus 334 ~~-kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 334 FF-KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HH-hcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 22 366777777777642 33332 33456666666544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.68 E-value=2.5e-10 Score=114.57 Aligned_cols=129 Identities=28% Similarity=0.260 Sum_probs=88.0
Q ss_pred ccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc
Q 046908 289 LSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368 (551)
Q Consensus 289 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 368 (551)
.-.|...+.++|.++ .+..++.-++.|+.|+|++|+++.. ..+..++.|+.|||++|.+.
T Consensus 163 Wn~L~~a~fsyN~L~-------~mD~SLqll~ale~LnLshNk~~~v-------------~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-------LMDESLQLLPALESLNLSHNKFTKV-------------DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hhhHhhhhcchhhHH-------hHHHHHHHHHHhhhhccchhhhhhh-------------HHHHhcccccccccccchhc
Confidence 445666777777776 4556666677888888888887621 12467788888888888887
Q ss_pred ccCCc-cccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccC-CCCCCCCCCCCeEECCCCcccc
Q 046908 369 GEIPR-EIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI-PPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 369 ~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
.+|. ...++. |+.|++++|.++.. ..+.++.+|+.||+++|-|++-- -..+..+..|+.|.|.+|++.+
T Consensus 223 -~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 223 -HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3332 233444 88888888888743 33667888888888888876421 1234455678888888888854
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=1.2e-09 Score=109.86 Aligned_cols=126 Identities=26% Similarity=0.209 Sum_probs=73.3
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
+|...+.+.|.+. ....++.-++.++.|+|++|+++ .+. ....++.|++|||++|.+.....-.-.++. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 4555666666655 23334455566666666666665 332 334466666777776666543322223333 667777
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cccccceeeccccccc
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~ 303 (551)
++|.++.. .++.++.+|+.||+++|-+.+...-.+ .+..|++|+|.+|.+.
T Consensus 240 rnN~l~tL-------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL-------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh-------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77766432 225666677777777776666544333 5667777777777664
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.8e-09 Score=96.18 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=57.1
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccccc-ccCcCCCchhhHhhccCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNH-FSGKMDDANILVQLSQLKS 268 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~ 268 (551)
.|+.+||++..++..--..+.+.|.+|+.|.+.++++.+.+...+..-.+|+.++|+.+. ++.. ..-..+.+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n----~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN----ALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh----HHHHHHHhhhh
Confidence 466666666665533333445556666666666666666555556666666666666542 2111 22233556666
Q ss_pred CCEEECCCCcccccCCCcc---cccccceeecccc
Q 046908 269 LELIDIFENSLSGSLVSSF---NLSSVKHLYLQKN 300 (551)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~n 300 (551)
|..|+++.|.+........ --+.|+.|+++++
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 6666666665543322222 2345555555554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.51 E-value=2.6e-08 Score=88.86 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=19.7
Q ss_pred CCCcEEEcCCCCCCCccc-c----cc--cCCCCCCEEeCCCCcCc
Q 046908 379 QNIRALNLSNNFLSGAIP-E----SF--SNLKMTESLDLSHNRLS 416 (551)
Q Consensus 379 ~~L~~L~L~~n~l~~~~~-~----~~--~~l~~L~~L~l~~n~l~ 416 (551)
++|..|...+|.+.+.+- . .| ..+|-|..|-+.+|++.
T Consensus 272 p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 272 PNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred CCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 455555555554432211 1 11 24566666777777775
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.37 E-value=1.1e-07 Score=85.08 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=50.1
Q ss_pred CCCCCEEECcCCcccccC----CcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-
Q 046908 213 CVALDLFDLSNNNFFGQI----FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF- 287 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 287 (551)
-+.|+......|++..-. ...|....+|+++.+.+|.|....-..-+...+..+++|++||+.+|.++.......
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 345666666666554211 112333456777777777665332222334456677778888888777764433222
Q ss_pred ----cccccceeeccccccc
Q 046908 288 ----NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 288 ----~~~~L~~L~L~~n~l~ 303 (551)
.++.|++|.+.+|-++
T Consensus 236 ~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHhcccchhhhccccchhhc
Confidence 3445666666666554
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3.4e-07 Score=83.00 Aligned_cols=188 Identities=19% Similarity=0.123 Sum_probs=87.5
Q ss_pred CCCCCEEECcCCcccc--cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--c
Q 046908 213 CVALDLFDLSNNNFFG--QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--N 288 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~ 288 (551)
++.++.+||.+|.++. .+...+.++|.|++|+|+.|++...... .| ..+.+|++|-+.+..+.......+ .
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Cc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 4455566666665543 1222344566666666666665543221 11 234455566555555443333333 5
Q ss_pred ccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc
Q 046908 289 LSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368 (551)
Q Consensus 289 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 368 (551)
+|.+++|+++.|.+..-+.-...+ +. .-+.+++++...|.... -...+++ -...|++..+.+..|++.
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~-e~--~s~~v~tlh~~~c~~~~--w~~~~~l-------~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCI-ED--WSTEVLTLHQLPCLEQL--WLNKNKL-------SRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred chhhhhhhhccchhhhhccccccc-cc--cchhhhhhhcCCcHHHH--HHHHHhH-------HhhcccchheeeecCccc
Confidence 566666666666332100000000 00 01234444444443220 0000111 133455566666666554
Q ss_pred ccC-CccccCCCCCcEEEcCCCCCCCcc-cccccCCCCCCEEeCCCCcCcc
Q 046908 369 GEI-PREIGQLQNIRALNLSNNFLSGAI-PESFSNLKMTESLDLSHNRLSG 417 (551)
Q Consensus 369 ~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 417 (551)
+.- -+.+..++.+-.|+|+.|+|..-. -+++.+++.|..|.+++|.+..
T Consensus 213 ~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 213 TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 321 233445566666777777765321 2456667777777777776653
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2e-07 Score=84.47 Aligned_cols=86 Identities=24% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCCCCCEeeCCCCccccccChh-hhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCC--CCCchhhhCCCC
Q 046908 53 NLTSLEYLDRFSINFQGTISIN-SLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL--HVIPSFLLQHYH 129 (551)
Q Consensus 53 ~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l--~~l~~~~~~~~~ 129 (551)
..+.++.+||.+|.++.+-... .+.++|.|++|+++.|.+...+.... .+..+|+.|-|.+..+ +.....+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3456666777776666443322 24566667777776666554444321 3455677777777666 344445556666
Q ss_pred CCEEEccCCc
Q 046908 130 LIFLDLSNNK 139 (551)
Q Consensus 130 L~~L~Ls~n~ 139 (551)
+++|.+|.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6666666653
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=4.7e-08 Score=78.17 Aligned_cols=83 Identities=25% Similarity=0.386 Sum_probs=44.0
Q ss_pred ccCceEecCCCcCcccCCcccc-CCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEE
Q 046908 355 KYMAGLDLSSNELSGEIPREIG-QLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFN 433 (551)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 433 (551)
..|+..+|++|.+. .+|+.|. ..+.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 44445555555555 3333332 2335555666666665 33444555666666666666655 4455555555555556
Q ss_pred CCCCccc
Q 046908 434 VSYNNLS 440 (551)
Q Consensus 434 l~~N~l~ 440 (551)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555544
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.4e-07 Score=75.49 Aligned_cols=108 Identities=28% Similarity=0.438 Sum_probs=70.2
Q ss_pred CccEEEccCCCCCCCch---hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 106 QLKVLKLSDCHLHVIPS---FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
.+..++|+.|.+..++. .+...++|+..+|++|.+. .+|..+...++.++.+++++|.+. ..|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-------------~fp~kft~kf~t~t~lNl~~neis-dvP 93 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-------------KFPKKFTIKFPTATTLNLANNEIS-DVP 93 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-------------hCCHHHhhccchhhhhhcchhhhh-hch
Confidence 45566677777765554 3445556666777777776 666666665667777777777776 455
Q ss_pred cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccccc
Q 046908 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229 (551)
Q Consensus 183 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 229 (551)
..+..++.|+.|+++.|.+. ..|..++. +.++-.|+..+|.+..+
T Consensus 94 eE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLDSPENARAEI 138 (177)
T ss_pred HHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhcCCCCccccC
Confidence 55777777777777777776 55555544 66666677666665543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=2.2e-06 Score=55.51 Aligned_cols=37 Identities=51% Similarity=0.739 Sum_probs=24.9
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCc
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLS 44 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 44 (551)
++|++|++++|+|+. +|..++++++|+.|++++|.|+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 467777777777773 4445777777777777777776
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=5.7e-06 Score=71.08 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=48.2
Q ss_pred CCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEE
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLK 111 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 111 (551)
+...+||++|.+.. -+.|..++.|.+|.++.|.++. +....-..+++|..|.+.+|.+..-.+.+-+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 33444444444431 1123444444444444444442 22222233344444444444433333333445555666666
Q ss_pred ccCCCCCCCch----hhhCCCCCCEEEccCC
Q 046908 112 LSDCHLHVIPS----FLLQHYHLIFLDLSNN 138 (551)
Q Consensus 112 l~~n~l~~l~~----~~~~~~~L~~L~Ls~n 138 (551)
+-+|....-+. .+.++++|+.||.+.-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66666533321 3456666777766654
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=9.2e-06 Score=69.86 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=60.3
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccC-CcccCCCCCCCEE
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI-FPKYMNLTHLHWL 243 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 243 (551)
.....+||++|.+... +.|..++.|.+|.+++|+|+ .+...+..-+++|..|.|.+|.+.... -.-+..+|.|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3455666666665422 24556677777777777776 566555555666777777777664321 1234556666666
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN 277 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 277 (551)
.+-+|+++...... ...+..+++|++||++.-
T Consensus 119 tll~Npv~~k~~YR--~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYR--LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCce--eEEEEecCcceEeehhhh
Confidence 66666655432211 111445556666655543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=9.9e-06 Score=52.43 Aligned_cols=36 Identities=44% Similarity=0.680 Sum_probs=15.6
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 380 NIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 380 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
+|++|++++|+|+. +|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2333444455555555555444
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.87 E-value=3.7e-05 Score=63.96 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=13.8
Q ss_pred hhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccC
Q 046908 74 NSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSD 114 (551)
Q Consensus 74 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 114 (551)
.+|.++++|+.+.+.. ....++..+|..+++|+.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 3444555555554432 13334444444444444444444
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.86 E-value=3e-05 Score=64.53 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=28.0
Q ss_pred hhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCC
Q 046908 161 GIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 161 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
|..+++|+.+.+.. .+......+|..+++|+.+++.++ +. .++...|.++.+++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 33344444444442 233333444444444444444432 33 34444444444444444433 2222233334444444
Q ss_pred CEEecc
Q 046908 241 HWLYLD 246 (551)
Q Consensus 241 ~~L~L~ 246 (551)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00012 Score=71.64 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=39.5
Q ss_pred CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCC-cccccCCCcccccc
Q 046908 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN-SLSGSLVSSFNLSS 291 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~ 291 (551)
+.+++.|++++|.+... |. -.++|++|.++++.-.. .+|..+ .++|+.|++++| .+... .++
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLt-----sLP~~L--P~nLe~L~Ls~Cs~L~sL------P~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLT-----TLPGSI--PEGLEKLTVCHCPEISGL------PES 113 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcc-----cCCchh--hhhhhheEccCccccccc------ccc
Confidence 67788888888866543 31 12357888887643222 122112 246777777776 33321 234
Q ss_pred cceeeccccc
Q 046908 292 VKHLYLQKNA 301 (551)
Q Consensus 292 L~~L~L~~n~ 301 (551)
|+.|++..+.
T Consensus 114 Le~L~L~~n~ 123 (426)
T PRK15386 114 VRSLEIKGSA 123 (426)
T ss_pred cceEEeCCCC
Confidence 6666665543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.75 E-value=1.5e-06 Score=82.59 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=83.8
Q ss_pred hhCCCCCCEEECcCCcc-cccCCccc-CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccC--CC
Q 046908 210 VSGCVALDLFDLSNNNF-FGQIFPKY-MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL--VS 285 (551)
Q Consensus 210 ~~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~ 285 (551)
..++..|+.|+.+++.- +.....++ .++.+|+.+.++.++--+. ..+...-.+.+.|+.+++.++...... ..
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---RGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---hhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 34566677777766532 21111222 3567777777777653111 011122345677777777776543221 11
Q ss_pred cc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCC
Q 046908 286 SF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSS 364 (551)
Q Consensus 286 ~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~ 364 (551)
.. +++.|+++.+++|....+.++- .+...-..+..|+.+.+++++.... ..+. ....+++|+.+++-+
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le--------~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITD--ATLE--------HLSICRNLERIELID 435 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchH--HHHH--------HHhhCcccceeeeec
Confidence 11 7888888888887643211000 1112234567788888888875411 1111 135677888888877
Q ss_pred CcCcc-c-CCccccCCCCCcEEE
Q 046908 365 NELSG-E-IPREIGQLQNIRALN 385 (551)
Q Consensus 365 n~l~~-~-~~~~~~~l~~L~~L~ 385 (551)
++-.. . +...-.+++++++..
T Consensus 436 ~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 436 CQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhHHHHhhCccceehh
Confidence 64321 1 122234555555543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=3.2e-05 Score=82.07 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCCCCEEEcccCcCcc-ccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 29 NLTHLKVLDISNNQLSG-KVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
.+|.|+.|.+++-.+.. .......++++|..||+++.++... ..+..+++|+.|.+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMR 203 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhcc
Confidence 45555555555544321 1222334555555555555554422 224444444444443
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.62 E-value=3.7e-06 Score=80.01 Aligned_cols=63 Identities=27% Similarity=0.254 Sum_probs=27.3
Q ss_pred hccccCceEecCCCcCc-cc----CCccccCCCCCcEEEcCCCCCCC-cccccccCCCCCCEEeCCCCc
Q 046908 352 SNLKYMAGLDLSSNELS-GE----IPREIGQLQNIRALNLSNNFLSG-AIPESFSNLKMTESLDLSHNR 414 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~-~~----~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 414 (551)
.+++.|+.|.++++... +. ....-..+..|..+.|+++.... ..-+.+..+++|+.+++-+++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34555555555555332 11 01112334455555555554431 112233445555555555543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00023 Score=69.76 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCC
Q 046908 103 PTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNN 138 (551)
Q Consensus 103 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n 138 (551)
.+.+++.|++++|.+..+|. -..+|++|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc 82 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENC 82 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCC
Confidence 35677777777777777772 2235777777664
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=6.4e-05 Score=79.87 Aligned_cols=111 Identities=27% Similarity=0.317 Sum_probs=79.6
Q ss_pred CCCCCCEEECcCCCCcc-cCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 5 NLKNLFELDLSSNNFEG-HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
.||.|++|.+++=.+.. .+..-..++|+|..||+|+..++.. ..+++|++|+.|.+.+-.+........+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 47899999988866542 2234466899999999999999954 66889999999988877766544455678899999
Q ss_pred EEEcccCcccccc-----cCCCccCCCCccEEEccCCCC
Q 046908 84 VLLISSGSNMLQV-----KTETWHPTSQLKVLKLSDCHL 117 (551)
Q Consensus 84 ~L~l~~n~~~~~~-----~~~~~~~l~~L~~L~l~~n~l 117 (551)
.||+|........ -.+.-..+|+|+.||.+++.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 9999875433221 112234467777777777766
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=4e-05 Score=69.27 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=55.5
Q ss_pred CCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcccc
Q 046908 238 THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQIN 317 (551)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 317 (551)
.+.+.|+..++.++++ .....++.|++|.|+-|+++...+.. .|..|++|+|..|.|.+.+. -..+.
T Consensus 19 ~~vkKLNcwg~~L~DI-------sic~kMp~lEVLsLSvNkIssL~pl~-rCtrLkElYLRkN~I~sldE-----L~YLk 85 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-------SICEKMPLLEVLSLSVNKISSLAPLQ-RCTRLKELYLRKNCIESLDE-----LEYLK 85 (388)
T ss_pred HHhhhhcccCCCccHH-------HHHHhcccceeEEeeccccccchhHH-HHHHHHHHHHHhcccccHHH-----HHHHh
Confidence 3444555555554432 11345566666666666665543221 56667777777776652111 02245
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEe
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~ 361 (551)
++|+|+.|.|..|+..+..+.... ...+.-+|+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR------~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYR------RKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHH------HHHHHHcccchhcc
Confidence 667777777777776665554331 11235556666654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00021 Score=64.36 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCcc--ccccChhhhcCCCCCCEEEcccCcccccccCCCccCC
Q 046908 27 LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF--QGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPT 104 (551)
Q Consensus 27 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 104 (551)
...+..|+.|++.+..++.. ..|-.|++|+.|.++.|.+ .+.+..- ...+++|+++++++|.+...-.......+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhh
Confidence 34455666666666655521 2355667777777777733 3333221 23447888888887775432222234566
Q ss_pred CCccEEEccCCCCCCCc----hhhhCCCCCCEEEcc
Q 046908 105 SQLKVLKLSDCHLHVIP----SFLLQHYHLIFLDLS 136 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~----~~~~~~~~L~~L~Ls 136 (551)
.+|..|++.+|..+.+- ..+.-+++|++||--
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 67888888888875543 245556778777643
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=5.6e-05 Score=68.33 Aligned_cols=100 Identities=22% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+.+.++|+.-++.+. .|. +...++.|++|.|+-|+++... .|..|++|++|+|..|.|..+ .-...+.+++
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl----dEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL----DELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH----HHHHHHhcCc
Confidence 334445555555554 222 2234556666666666665443 255666666666666666543 2233455666
Q ss_pred CCCEEECCCCcccccCCCcc------cccccceee
Q 046908 268 SLELIDIFENSLSGSLVSSF------NLSSVKHLY 296 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~------~~~~L~~L~ 296 (551)
+|+.|-|..|.-.+..+..+ .+|+|++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666666665544443333 355555553
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00061 Score=61.48 Aligned_cols=85 Identities=25% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCC--cccccCCCcc-cccccceeeccccccccCccceeccC
Q 046908 237 LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN--SLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 237 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
...|+.+++.+..++... .|..+++|+.|.++.| .+.+-..... .+|+|+++++++|+|... .++
T Consensus 42 ~~~le~ls~~n~gltt~~-------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l----stl- 109 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL----STL- 109 (260)
T ss_pred ccchhhhhhhccceeecc-------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc----ccc-
Confidence 344445555554443321 2555667777777777 3333333222 557777777777776520 011
Q ss_pred ccccccCCCceEEecCCccc
Q 046908 314 YQINELSNLHVLLLRGNSLQ 333 (551)
Q Consensus 314 ~~~~~l~~L~~L~l~~n~l~ 333 (551)
..+..+.+|..|++.+|..+
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcchhhhhcccCCcc
Confidence 12344566667777776654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.44 E-value=0.00036 Score=72.67 Aligned_cols=237 Identities=20% Similarity=0.103 Sum_probs=125.6
Q ss_pred CCCCCCEEEcccCc-Cccc-cchhccCCCCCCEeeCCCC-cccccc---ChhhhcCCCCCCEEEcccCcccccccCCCc-
Q 046908 29 NLTHLKVLDISNNQ-LSGK-VPSTLTNLTSLEYLDRFSI-NFQGTI---SINSLANHSKLEVLLISSGSNMLQVKTETW- 101 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n-~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~- 101 (551)
.++.|+.|.+.++. +... .-.....+++|+.|+++++ ...... .......+.+|+.|+++++.......-..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46778888887773 3321 2344566778888887752 111111 122345567888888887764332221112
Q ss_pred cCCCCccEEEccCCC-C--CCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCccc
Q 046908 102 HPTSQLKVLKLSDCH-L--HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178 (551)
Q Consensus 102 ~~l~~L~~L~l~~n~-l--~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~ 178 (551)
..+++|+.|.+.+|. + ..+-.....++.|++|+++++..... ..+... ...+++++.+.+....-
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d----------~~l~~~-~~~c~~l~~l~~~~~~~- 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD----------SGLEAL-LKNCPNLRELKLLSLNG- 333 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH----------HHHHHH-HHhCcchhhhhhhhcCC-
Confidence 237789999888777 4 34455667788899999998754310 012222 33366666655433221
Q ss_pred ccCCcccccCCCCcEEECcCCccc--eeCChhhhhCCCCCCEEECcCCcccccC-CcccCCCCCCCEEecccccccCcCC
Q 046908 179 GDIPYSIGEMKELYMQDLSRNNFS--GELPQPIVSGCVALDLFDLSNNNFFGQI-FPKYMNLTHLHWLYLDNNHFSGKMD 255 (551)
Q Consensus 179 ~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 255 (551)
+..++.+.+++.... +.........++.++.+.+..+...... ...+.+++.|+ ..+...
T Consensus 334 ---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------- 396 (482)
T KOG1947|consen 334 ---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------- 396 (482)
T ss_pred ---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH-------
Confidence 334444444332221 1233344556778888887777643322 23445555552 222111
Q ss_pred CchhhHhhccCCCCCEEECCCCcccccCCCcc---cccccceeeccccc
Q 046908 256 DANILVQLSQLKSLELIDIFENSLSGSLVSSF---NLSSVKHLYLQKNA 301 (551)
Q Consensus 256 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~n~ 301 (551)
......++.|+++.+.......... .+..++.+++.++.
T Consensus 397 -------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 397 -------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred -------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 2222237777777765433222111 15566667666664
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.35 E-value=0.00064 Score=70.72 Aligned_cols=240 Identities=19% Similarity=0.061 Sum_probs=138.1
Q ss_pred cCCCCCCEeeCCCCccccccC-hhhhcCCCCCCEEEcccC-cccccc---cCCCccCCCCccEEEccCCC-CCC--Cchh
Q 046908 52 TNLTSLEYLDRFSINFQGTIS-INSLANHSKLEVLLISSG-SNMLQV---KTETWHPTSQLKVLKLSDCH-LHV--IPSF 123 (551)
Q Consensus 52 ~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~l~~n-~~~~~~---~~~~~~~l~~L~~L~l~~n~-l~~--l~~~ 123 (551)
...+.|+.|.+.++....... ......++.|++|+++++ ...... .......+++|+.|+++.+. ++. +...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347889999887765443322 244678899999999863 221111 12244567899999999998 543 2233
Q ss_pred hhCCCCCCEEEccCCc-ccccCCCCCCCcccccCChhHhhhcCCccEEEccCCccccc--CCcccccCCCCcEEECcCCc
Q 046908 124 LLQHYHLIFLDLSNNK-VVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD--IPYSIGEMKELYMQDLSRNN 200 (551)
Q Consensus 124 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~ 200 (551)
...+++|++|.+.++. ++. .--..+...++.|+.|+++++..... ......++++++.+.+....
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~------------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD------------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred HhhCCCcceEccCCCCccch------------hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 3448899999988776 442 22234555688999999998876421 22224446666665543322
Q ss_pred cceeCChhhhhCCCCCCEEECcCCcc---cccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCC-EEECCC
Q 046908 201 FSGELPQPIVSGCVALDLFDLSNNNF---FGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLE-LIDIFE 276 (551)
Q Consensus 201 l~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~-~L~l~~ 276 (551)
- +..++.+.+..... ..........+++++.+.+..+..... .....+.+++.|. .+.+..
T Consensus 333 ~-----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~l~gc~~l~~~l~~~~ 397 (482)
T KOG1947|consen 333 G-----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDL----GLELSLRGCPNLTESLELRL 397 (482)
T ss_pred C-----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCc----chHHHhcCCcccchHHHHHh
Confidence 1 33444444443322 112233456889999999988874332 1123356666662 222111
Q ss_pred CcccccCCCcccccccceeeccccccccCccceeccCccccc-cCCCceEEecCCccc
Q 046908 277 NSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINE-LSNLHVLLLRGNSLQ 333 (551)
Q Consensus 277 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~ 333 (551)
. ....++.|++..+.......+ ..... +..++.+++.++...
T Consensus 398 ~----------~~~~l~~L~l~~~~~~t~~~l-----~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 398 C----------RSDSLRVLNLSDCRLVTDKGL-----RCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred c----------cCCccceEecccCccccccch-----HHHhhhhhccccCCccCcccc
Confidence 1 122388888888864321100 11111 667888888887654
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.98 E-value=5e-05 Score=77.10 Aligned_cols=86 Identities=24% Similarity=0.322 Sum_probs=41.1
Q ss_pred cccCceEecCCCcCccc----CCccccCCCC-CcEEEcCCCCCCCc----ccccccCC-CCCCEEeCCCCcCcccC----
Q 046908 354 LKYMAGLDLSSNELSGE----IPREIGQLQN-IRALNLSNNFLSGA----IPESFSNL-KMTESLDLSHNRLSGHI---- 419 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~~---- 419 (551)
...++.|.+++|.++.. ....+...+. +..|++..|++.+. ....+..+ +.+++++++.|.++...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44555566665555421 1112233333 45566666655432 11223333 45566666666665322
Q ss_pred CCCCCCCCCCCeEECCCCcc
Q 046908 420 PPQLTGLNFLSNFNVSYNNL 439 (551)
Q Consensus 420 p~~~~~l~~L~~l~l~~N~l 439 (551)
...+..++.++.+.+.+|++
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhhhHHHHHhhcccCcc
Confidence 22334445566666666655
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0036 Score=33.55 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=9.3
Q ss_pred CCEEECcCCCCcccCCccCC
Q 046908 9 LFELDLSSNNFEGHIPQCLN 28 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~ 28 (551)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3333343
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.32 E-value=0.0072 Score=32.35 Aligned_cols=22 Identities=45% Similarity=0.836 Sum_probs=15.5
Q ss_pred CCCEEEcccCcCccccchhccCC
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNL 54 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l 54 (551)
+|++|||++|.++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788888888888 666666543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.10 E-value=0.00022 Score=72.51 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=50.6
Q ss_pred CCcEEECcCCccceeCChhh---hhCCCCCCEEECcCCcccccCC----cccCCC-CCCCEEecccccccCcCCCchhhH
Q 046908 190 ELYMQDLSRNNFSGELPQPI---VSGCVALDLFDLSNNNFFGQIF----PKYMNL-THLHWLYLDNNHFSGKMDDANILV 261 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~ 261 (551)
.+..+.|.+|.+.+.-...+ ......|+.|++++|.+.+... ..+... ..+++|++..|.++..... .+..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~-~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA-PLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH-HHHH
Confidence 36777888887764322222 2335567777777777653221 122222 4456666666666543322 4555
Q ss_pred hhccCCCCCEEECCCCccc
Q 046908 262 QLSQLKSLELIDIFENSLS 280 (551)
Q Consensus 262 ~~~~l~~L~~L~l~~n~l~ 280 (551)
.+.....++.++++.|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHhcccchhHHHHHhcccc
Confidence 5656666777777766653
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.45 E-value=0.053 Score=26.84 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=6.0
Q ss_pred CccEEEccCCCCCCC
Q 046908 106 QLKVLKLSDCHLHVI 120 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l 120 (551)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555554443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.51 E-value=0.11 Score=29.05 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=10.2
Q ss_pred CCCCEEECcCCCCcccCCccC
Q 046908 7 KNLFELDLSSNNFEGHIPQCL 27 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~ 27 (551)
++|++|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555555555553333333
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.51 E-value=0.11 Score=29.05 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=10.2
Q ss_pred CCCCEEECcCCCCcccCCccC
Q 046908 7 KNLFELDLSSNNFEGHIPQCL 27 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~ 27 (551)
++|++|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555555555553333333
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.50 E-value=0.0043 Score=54.96 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=33.4
Q ss_pred hccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
+.++.+..|+++.|.+. ..|..+.+...++.+++.+|..+ ..|.++...++++.+++-.|.+.
T Consensus 62 s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 62 SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 44444555555555554 45555555555555555555554 44555555555555555555543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.79 E-value=0.17 Score=28.23 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=13.5
Q ss_pred CCCcEEECcCCccceeCChhhhh
Q 046908 189 KELYMQDLSRNNFSGELPQPIVS 211 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~ 211 (551)
++|+.|+|++|++. .+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666666666666 66665543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.79 E-value=0.17 Score=28.23 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=13.5
Q ss_pred CCCcEEECcCCccceeCChhhhh
Q 046908 189 KELYMQDLSRNNFSGELPQPIVS 211 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~ 211 (551)
++|+.|+|++|++. .+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666666666666 66665543
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.95 E-value=0.067 Score=46.69 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=19.2
Q ss_pred CCCccEEEccCCC-CCCC-chhhhCCCCCCEEEccC
Q 046908 104 TSQLKVLKLSDCH-LHVI-PSFLLQHYHLIFLDLSN 137 (551)
Q Consensus 104 l~~L~~L~l~~n~-l~~l-~~~~~~~~~L~~L~Ls~ 137 (551)
.++|+.|++++|. |+.- -..+.++++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3466666666554 3222 24566666666666655
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.49 E-value=0.23 Score=27.02 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=6.2
Q ss_pred CCCceEEecCCccc
Q 046908 320 SNLHVLLLRGNSLQ 333 (551)
Q Consensus 320 ~~L~~L~l~~n~l~ 333 (551)
++|++|++++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555554
No 83
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=84.42 E-value=0.81 Score=37.76 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 046908 504 FGASFVTVILGL 515 (551)
Q Consensus 504 ~~~~~~~~~~~~ 515 (551)
+++++|++++++
T Consensus 4 l~~iii~~i~l~ 15 (130)
T PF12273_consen 4 LFAIIIVAILLF 15 (130)
T ss_pred eHHHHHHHHHHH
Confidence 333333333333
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.18 E-value=0.042 Score=48.95 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc
Q 046908 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 184 (551)
...+.||++.|.+..+...+..++.+..||++.|.+. .+|..... ...+..+++..|..+ ..|.+
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-------------~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s 106 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-------------FLPKDAKQ-QRETVNAASHKNNHS-QQPKS 106 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-------------hChhhHHH-HHHHHHHHhhccchh-hCCcc
Confidence 3444555555554444444444444555555555444 34443332 333444444444433 44555
Q ss_pred cccCCCCcEEECcCCc
Q 046908 185 IGEMKELYMQDLSRNN 200 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~ 200 (551)
+...++++++++.+|.
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 5555555555555544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.07 E-value=0.92 Score=25.31 Aligned_cols=14 Identities=57% Similarity=0.702 Sum_probs=7.8
Q ss_pred CCCCEEECcCCCCc
Q 046908 7 KNLFELDLSSNNFE 20 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~ 20 (551)
.+|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.27 E-value=0.15 Score=44.56 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=54.6
Q ss_pred CCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhc-CCCCCCEEEcccCcccccccCCCccCCCCccEE
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLA-NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVL 110 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 110 (551)
.++.+|-++..|..+.-+-+.+++.++.|.+.++.-.+....+.++ ..++|+.|++++|..+++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4577777887777666666777777777776665543222222222 347888888888887766655556677788877
Q ss_pred EccC
Q 046908 111 KLSD 114 (551)
Q Consensus 111 ~l~~ 114 (551)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7655
No 87
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.37 E-value=2.4 Score=25.80 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHH
Q 046908 504 FGASFVTVILGL 515 (551)
Q Consensus 504 ~~~~~~~~~~~~ 515 (551)
.+++++++++++
T Consensus 8 IIv~V~vg~~ii 19 (38)
T PF02439_consen 8 IIVAVVVGMAII 19 (38)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 88
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=80.23 E-value=3.1 Score=39.50 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHhh
Q 046908 524 YWRRRWYVFAKILNLV 539 (551)
Q Consensus 524 ~~~~~~~~~~~~~~~~ 539 (551)
||||...+..+..|.|
T Consensus 280 RYRRKKKmkKKlQYiK 295 (299)
T PF02009_consen 280 RYRRKKKMKKKLQYIK 295 (299)
T ss_pred HHHHHhhhhHHHHHHH
Confidence 3555444444544444
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=79.76 E-value=0.97 Score=54.79 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=28.2
Q ss_pred eCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 409 DLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 409 ~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
||++|+|+.+.+..|..+++|+.|+|++|++.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 5777888766667777788888888888888777754
No 90
>PTZ00370 STEVOR; Provisional
Probab=76.70 E-value=3.1 Score=38.48 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=11.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHH
Q 046908 515 LFAVLWINSYWRRRWYVFAKI 535 (551)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~ 535 (551)
++.++|+++|+++.|.+--++
T Consensus 272 iilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 272 IILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHHHhhcchhHHHHHh
Confidence 344556666666666654444
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=76.54 E-value=3.1 Score=33.53 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=6.8
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 046908 501 KWSFGASFVTVILGLFAVL 519 (551)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~ 519 (551)
+|++++.+.++.+++++++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.07 E-value=1.8 Score=24.08 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=12.7
Q ss_pred CccEEEccCCCCCCCch
Q 046908 106 QLKVLKLSDCHLHVIPS 122 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~ 122 (551)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777777777777775
No 93
>PTZ00046 rifin; Provisional
Probab=74.89 E-value=4.4 Score=39.14 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=13.5
Q ss_pred HHhhhhhhHHHHHHHHHHHhhh
Q 046908 519 LWINSYWRRRWYVFAKILNLVL 540 (551)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~ 540 (551)
+.+..||||...+..+..|.|+
T Consensus 334 IYLILRYRRKKKMkKKLQYiKL 355 (358)
T PTZ00046 334 IYLILRYRRKKKMKKKLQYIKL 355 (358)
T ss_pred HHHHHHhhhcchhHHHHHHHHH
Confidence 3344557777777777666654
No 94
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=74.81 E-value=4.6 Score=38.91 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=12.8
Q ss_pred HhhhhhhHHHHHHHHHHHhhh
Q 046908 520 WINSYWRRRWYVFAKILNLVL 540 (551)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~ 540 (551)
.+..||||+..+..+..|.|+
T Consensus 330 YLILRYRRKKKMkKKLQYiKL 350 (353)
T TIGR01477 330 YLILRYRRKKKMKKKLQYIKL 350 (353)
T ss_pred HHHHHhhhcchhHHHHHHHHH
Confidence 344556676666666666654
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.49 E-value=18 Score=36.46 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=31.3
Q ss_pred CcEEEcCCCCCCCcccc---cccCCCCCCEEeCCCCcCcc----cCCCCCCCCCCCCeEECCCCc
Q 046908 381 IRALNLSNNFLSGAIPE---SFSNLKMTESLDLSHNRLSG----HIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 381 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~N~ 438 (551)
+..+.++.|.+...... ....-+.+..|++++|.... .+|.......+++.+..+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 55666666666543322 23345567777777776642 344444444455555555553
No 96
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=73.25 E-value=6.6 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhh
Q 046908 499 ALKWSFGASFVTVILGLFAVLWINS 523 (551)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (551)
....++.++++++++.++.+.+.++
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566666666666665554443
No 97
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=72.44 E-value=6.6 Score=29.41 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=16.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 046908 498 VALKWSFGASFVTVILGLFAVLWINSYWR 526 (551)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (551)
.|.+++.+.++++++++++++++++.+++
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 34455555566666665555555555555
No 98
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.05 E-value=3.4 Score=23.45 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=6.1
Q ss_pred CCCEEECcCCCC
Q 046908 8 NLFELDLSSNNF 19 (551)
Q Consensus 8 ~L~~L~Ls~n~i 19 (551)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=71.06 E-value=2 Score=52.35 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=40.5
Q ss_pred ECCCCccccCCCC-CccCCccCCcccCCCCCCCCcccc------------------CCCCCCCCCCCCCCCC
Q 046908 433 NVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLIR------------------KKCSSALKPPATPTEE 485 (551)
Q Consensus 433 ~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~~------------------~~c~~~~~~~~~~~~~ 485 (551)
||++|+|+.+.+. +..+..+..+++.+|||.|+|.+. ..|..|....+.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~ 72 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLG 72 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCccc
Confidence 6899999977776 555678889999999999999763 2488877666555443
No 100
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=70.33 E-value=3.6 Score=38.01 Aligned_cols=14 Identities=14% Similarity=0.710 Sum_probs=6.6
Q ss_pred HHHHhhhhhhHHHH
Q 046908 517 AVLWINSYWRRRWY 530 (551)
Q Consensus 517 ~~~~~~~~~~~~~~ 530 (551)
.++|+++|+++.|.
T Consensus 278 LYiWlyrrRK~swk 291 (295)
T TIGR01478 278 LYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHhhccccc
Confidence 44455544444453
No 101
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.80 E-value=21 Score=35.90 Aligned_cols=154 Identities=21% Similarity=0.104 Sum_probs=70.3
Q ss_pred CCCEEEcccCcCccccchhccCC---CCCCEeeCCCCcccc--ccChhhhcCCCCCCEEEcccCccccc-------ccCC
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNL---TSLEYLDRFSINFQG--TISINSLANHSKLEVLLISSGSNMLQ-------VKTE 99 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~~ 99 (551)
.+.+++|+.|...+.+|.....+ .-++.++.+...+.- ....-.++.-++++..+++.|..... ...+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 45677777777666665543222 234555544333221 11111223334566666665543221 1122
Q ss_pred CccCCCCccEEEccCCCC--CCCchhhhCC-----CCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEc
Q 046908 100 TWHPTSQLKVLKLSDCHL--HVIPSFLLQH-----YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM 172 (551)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l--~~l~~~~~~~-----~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L 172 (551)
.|..-+++ +|++.++.. ...+..+..+ +.=-++|++.|...+.- .+.+.++ -..+++|..
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~----------vleaci~--g~R~q~l~~ 361 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAE----------VLEACIF--GQRVQVLLQ 361 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccc----------hhhcccc--ceeeeEeec
Confidence 45555677 788877776 2233222211 11224555555443210 1111222 124777777
Q ss_pred cCCcccccCCcc--cccCCCCcEEECcC
Q 046908 173 PKNIFEGDIPYS--IGEMKELYMQDLSR 198 (551)
Q Consensus 173 ~~n~~~~~~~~~--~~~l~~L~~L~L~~ 198 (551)
+.|...+..... ...-+..+.+++.+
T Consensus 362 rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 362 RDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred cccccccccccccceeeccccccccccc
Confidence 777666543332 22234455555544
No 102
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=61.36 E-value=1.9 Score=26.82 Aligned_cols=7 Identities=0% Similarity=-0.277 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 046908 504 FGASFVT 510 (551)
Q Consensus 504 ~~~~~~~ 510 (551)
+++.+++
T Consensus 17 VvVPV~v 23 (40)
T PF08693_consen 17 VVVPVGV 23 (40)
T ss_pred EEechHH
Confidence 3333333
No 103
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=59.27 E-value=30 Score=21.99 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhh
Q 046908 501 KWSFGASFVTVILGLFAVLWINSYWR 526 (551)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (551)
+..++.++++++.+.+++++++..++
T Consensus 8 ~L~~~F~~lIC~Fl~~~~~F~~F~~K 33 (54)
T PF06716_consen 8 YLLLAFGFLICLFLFCLVVFIWFVYK 33 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777766666655543343
No 104
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=58.30 E-value=5.2 Score=38.62 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 046908 504 FGASFVTVILGLFAVLWINSY 524 (551)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~ 524 (551)
++++++++++++++++++.||
T Consensus 277 VG~~La~lvlivLiaYli~Rr 297 (306)
T PF01299_consen 277 VGAALAGLVLIVLIAYLIGRR 297 (306)
T ss_pred HHHHHHHHHHHHHHhheeEec
Confidence 444444444444444444333
No 105
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.85 E-value=5.5 Score=40.68 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=16.4
Q ss_pred ccccCceEecCCCcCccc--CCccccCCCCCcEEEcCCC
Q 046908 353 NLKYMAGLDLSSNELSGE--IPREIGQLQNIRALNLSNN 389 (551)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n 389 (551)
+.+.+..+.|++|++-.. +...-...++|++|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555666655321 1111122345555555555
No 106
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=56.43 E-value=1.7 Score=36.15 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 046908 500 LKWSFGASFVTVILGLFAVLWINSYW 525 (551)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (551)
+++++++++.++++++++++++|++.
T Consensus 52 IGvVVGVGg~ill~il~lvf~~c~r~ 77 (154)
T PF04478_consen 52 IGVVVGVGGPILLGILALVFIFCIRR 77 (154)
T ss_pred EEEEecccHHHHHHHHHhheeEEEec
Confidence 33444444444444444444444433
No 107
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=51.72 E-value=20 Score=26.06 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHH
Q 046908 505 GASFVTVILGLFAVLWINSYWRRRW 529 (551)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (551)
.++.+++++++|+.+|+...|+.+|
T Consensus 6 l~~plivf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 6 LFVPLIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555666666655555544
No 108
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=50.30 E-value=5.3 Score=40.51 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHH
Q 046908 517 AVLWINSYWRRRWYV 531 (551)
Q Consensus 517 ~~~~~~~~~~~~~~~ 531 (551)
+.++.++++||+++.
T Consensus 372 v~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 372 VWVCLRCRRRRRQRD 386 (439)
T ss_dssp ---------------
T ss_pred hheeeeehhcccccc
Confidence 333344444444444
No 109
>PRK00523 hypothetical protein; Provisional
Probab=50.03 E-value=40 Score=24.16 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHH
Q 046908 508 FVTVILGLFAVLWINSYWRRR 528 (551)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~ 528 (551)
++++++.+++.+++.+++-.+
T Consensus 12 i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 110
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=49.30 E-value=9.3 Score=33.83 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=9.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh
Q 046908 500 LKWSFGASFVTVILGLFAVLWI 521 (551)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~ 521 (551)
+.++++++++++++++++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHH
Confidence 3344444444444433333333
No 111
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.05 E-value=12 Score=38.33 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=31.9
Q ss_pred hCCCCCCEEEccCCcccccCCCCCCCcccccCC--hhHhhhcCCccEEEccCCcccccCCccccc--CCCCcEEECcCCc
Q 046908 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLP--RNMGIVLQKLIYLDMPKNIFEGDIPYSIGE--MKELYMQDLSRNN 200 (551)
Q Consensus 125 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--l~~L~~L~L~~n~ 200 (551)
.+.+.+..+.|++|++. .+. ..+....|+|..|+|++|...-.....+.+ ...|++|-+.+|.
T Consensus 215 ~n~p~i~sl~lsnNrL~-------------~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLY-------------HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhh-------------chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 34455556666666554 111 123334566666666666221111112222 2345666677776
Q ss_pred cce
Q 046908 201 FSG 203 (551)
Q Consensus 201 l~~ 203 (551)
+..
T Consensus 282 lc~ 284 (585)
T KOG3763|consen 282 LCT 284 (585)
T ss_pred ccc
Confidence 653
No 112
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=47.22 E-value=27 Score=25.42 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHH
Q 046908 509 VTVILGLFAVLWINSYWRRRW 529 (551)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~ 529 (551)
+++++++++.+|....|+.+|
T Consensus 10 liif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 10 LIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344455556666655555444
No 113
>PRK01844 hypothetical protein; Provisional
Probab=46.87 E-value=47 Score=23.82 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhhhhhH
Q 046908 509 VTVILGLFAVLWINSYWRR 527 (551)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~ 527 (551)
+++++.+++.+++.+++-.
T Consensus 12 ~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 12 VALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333
No 114
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=45.09 E-value=42 Score=32.05 Aligned_cols=15 Identities=0% Similarity=-0.265 Sum_probs=6.1
Q ss_pred HHhhhh-hhHHHHHHH
Q 046908 519 LWINSY-WRRRWYVFA 533 (551)
Q Consensus 519 ~~~~~~-~~~~~~~~~ 533 (551)
+|.+|| .+..|..-+
T Consensus 278 ILRYRRKKKmkKKlQY 293 (299)
T PF02009_consen 278 ILRYRRKKKMKKKLQY 293 (299)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 333433 444444433
No 115
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=44.34 E-value=30 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHH
Q 046908 505 GASFVTVILGLFAVLWINSYWRRR 528 (551)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~ 528 (551)
++++.++++++.+.+.+++++|++
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~ 129 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRT 129 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeecc
Confidence 334444444444444455545444
No 116
>PRK14762 membrane protein; Provisional
Probab=43.91 E-value=36 Score=18.48 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 046908 500 LKWSFGASFVTVILGLFAVL 519 (551)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~ 519 (551)
..|++.+.++++++++..++
T Consensus 4 ~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 4 ILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666555443
No 117
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.39 E-value=24 Score=29.07 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHHH
Q 046908 502 WSFGASFVTVILGLF 516 (551)
Q Consensus 502 ~~~~~~~~~~~~~~~ 516 (551)
+++++++++++++++
T Consensus 5 ~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 5 FAIIIVAILLFLFLF 19 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 118
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.49 E-value=20 Score=19.71 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=5.5
Q ss_pred CCCCEEEcccC
Q 046908 31 THLKVLDISNN 41 (551)
Q Consensus 31 ~~L~~L~Ls~n 41 (551)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555544
No 119
>PRK09458 pspB phage shock protein B; Provisional
Probab=40.95 E-value=28 Score=25.17 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHH
Q 046908 505 GASFVTVILGLFAVLWINSYWRRRWY 530 (551)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (551)
.++-+++++++|+.+|....|+.+|.
T Consensus 6 l~~PliiF~ifVaPiWL~LHY~sk~~ 31 (75)
T PRK09458 6 LAIPLTIFVLFVAPIWLWLHYRSKRQ 31 (75)
T ss_pred HHHhHHHHHHHHHHHHHHHhhccccc
Confidence 34445566666777777666655443
No 120
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.18 E-value=1.7e+02 Score=20.46 Aligned_cols=17 Identities=12% Similarity=-0.107 Sum_probs=8.4
Q ss_pred hhhhhHHHHHHHHHHHH
Q 046908 500 LKWSFGASFVTVILGLF 516 (551)
Q Consensus 500 ~~~~~~~~~~~~~~~~~ 516 (551)
+.+++++|++++.++..
T Consensus 24 il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554433
No 121
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=32.81 E-value=24 Score=29.25 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=6.7
Q ss_pred HHhhhhceeEEEec
Q 046908 536 LNLVLKLCSSFEVP 549 (551)
Q Consensus 536 ~~~~~~~~~~~~~~ 549 (551)
.++..+..-|.+.|
T Consensus 48 qRRssk~kDytkt~ 61 (158)
T PF11770_consen 48 QRRSSKRKDYTKTP 61 (158)
T ss_pred HhhhhhccccccCc
Confidence 33334444565555
No 122
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=32.55 E-value=91 Score=23.33 Aligned_cols=19 Identities=11% Similarity=-0.122 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhhceeEE
Q 046908 528 RWYVFAKILNLVLKLCSSF 546 (551)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~ 546 (551)
......+....-+.-.||.
T Consensus 32 ~k~~~~k~i~~yL~e~gy~ 50 (85)
T PF11337_consen 32 QKHKAEKAIDWYLQEQGYK 50 (85)
T ss_pred hHHHHHHHHHHHHHHcCCc
Confidence 3444444444444456665
No 123
>PF15102 TMEM154: TMEM154 protein family
Probab=30.60 E-value=19 Score=29.83 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=6.3
Q ss_pred HHHHHHhhhhhhHH
Q 046908 515 LFAVLWINSYWRRR 528 (551)
Q Consensus 515 ~~~~~~~~~~~~~~ 528 (551)
++.++++..++||+
T Consensus 72 Ll~vV~lv~~~kRk 85 (146)
T PF15102_consen 72 LLSVVCLVIYYKRK 85 (146)
T ss_pred HHHHHHheeEEeec
Confidence 33344455555433
No 124
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=30.44 E-value=63 Score=23.83 Aligned_cols=28 Identities=4% Similarity=-0.058 Sum_probs=11.5
Q ss_pred hhhhhhhHHHHHHHHHHHH-HHHHhhhhh
Q 046908 498 VALKWSFGASFVTVILGLF-AVLWINSYW 525 (551)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 525 (551)
.+++++.+.+++++++.+. ++++++.++
T Consensus 15 ~~yyiiA~gga~llL~~v~l~vvL~C~r~ 43 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVCLGVVLYCHRF 43 (87)
T ss_pred eeeHHHhhccHHHHHHHHHHHHHHhhhhh
Confidence 3444444444444433333 344444433
No 125
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=29.89 E-value=1.3e+02 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhh
Q 046908 502 WSFGASFVTVILGLFAVLWINSYWR 526 (551)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (551)
|.+.++++++.+++-+++++..+++
T Consensus 17 W~~LVGVv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIALAAKCP 41 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456666665554444444443333
No 126
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=29.23 E-value=25 Score=28.25 Aligned_cols=10 Identities=30% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHhhhhhhHH
Q 046908 519 LWINSYWRRR 528 (551)
Q Consensus 519 ~~~~~~~~~~ 528 (551)
++.++++|++
T Consensus 99 lv~rrcrrr~ 108 (129)
T PF12191_consen 99 LVWRRCRRRE 108 (129)
T ss_dssp ----------
T ss_pred HHHhhhhccc
Confidence 3333334333
No 127
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=26.74 E-value=68 Score=30.03 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHH-HHHhhhhhhHH
Q 046908 504 FGASFVTVILGLFA-VLWINSYWRRR 528 (551)
Q Consensus 504 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 528 (551)
.+++++|+++++|+ ++++.+-||||
T Consensus 261 cgiaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555554444333 33343434443
No 128
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=26.47 E-value=2.9e+02 Score=21.95 Aligned_cols=26 Identities=12% Similarity=-0.065 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHH
Q 046908 507 SFVTVILGLFAVLWINSYWRRRWYVF 532 (551)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (551)
+++++.+.+++...+.+|..|||-.+
T Consensus 92 GLcaL~LaamGA~~LLrR~cRr~arr 117 (126)
T PF03229_consen 92 GLCALTLAAMGAGALLRRCCRRAARR 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444443
No 129
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=26.35 E-value=64 Score=28.32 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Q 046908 504 FGASFVTVILGLFAVLWINSYWR 526 (551)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~ 526 (551)
++.++|..+.+..++++.+++||
T Consensus 163 FiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 163 FIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcc
Confidence 34444444444444444544443
No 130
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.89 E-value=63 Score=23.89 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=5.0
Q ss_pred HHHHHHHHHhh
Q 046908 512 ILGLFAVLWIN 522 (551)
Q Consensus 512 ~~~~~~~~~~~ 522 (551)
.+++++++|..
T Consensus 15 ~~iiaIvvW~i 25 (81)
T PF00558_consen 15 ALIIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33345555543
No 131
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=25.44 E-value=2.8e+02 Score=20.75 Aligned_cols=6 Identities=17% Similarity=-0.125 Sum_probs=2.2
Q ss_pred hhceeE
Q 046908 540 LKLCSS 545 (551)
Q Consensus 540 ~~~~~~ 545 (551)
++..+|
T Consensus 78 l~Nld~ 83 (84)
T PF06143_consen 78 LANLDY 83 (84)
T ss_pred HHhcCC
Confidence 333333
No 132
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=24.11 E-value=85 Score=22.91 Aligned_cols=8 Identities=38% Similarity=0.306 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 046908 507 SFVTVILG 514 (551)
Q Consensus 507 ~~~~~~~~ 514 (551)
+++.++++
T Consensus 6 ~~~g~~~l 13 (75)
T PF14575_consen 6 IIVGVLLL 13 (75)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 133
>PTZ00370 STEVOR; Provisional
Probab=22.89 E-value=1.2e+02 Score=28.46 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHH-HhhhhhhHH
Q 046908 504 FGASFVTVILGLFAVL-WINSYWRRR 528 (551)
Q Consensus 504 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 528 (551)
.+++++|+++++|+++ ++.+-||||
T Consensus 257 ygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555554444333 343434444
No 134
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=21.47 E-value=44 Score=21.76 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=8.3
Q ss_pred CCCCCCcccc
Q 046908 460 NHELCGSLIR 469 (551)
Q Consensus 460 n~~~c~~~~~ 469 (551)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 7999999764
No 135
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=20.91 E-value=89 Score=32.94 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=9.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 046908 498 VALKWSFGASFVTVILGLFAVLW 520 (551)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~ 520 (551)
.|+++++++.++++++|+++++|
T Consensus 269 lWII~gVlvPv~vV~~Iiiil~~ 291 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLIIIILYW 291 (684)
T ss_pred eEEEehHhHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
Done!