Query 046908
Match_columns 551
No_of_seqs 366 out of 4253
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 09:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-56 4.3E-61 489.1 39.8 459 3-478 196-754 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.3E-52 7.8E-57 455.5 35.5 460 2-463 95-717 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 2E-52 6.7E-57 460.7 35.0 454 7-485 24-601 (844)
4 3t6q_A CD180 antigen; protein- 100.0 6.6E-50 2.3E-54 426.6 37.0 445 2-468 52-565 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-48 3.9E-53 422.6 38.9 452 3-468 45-627 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 7E-49 2.4E-53 418.7 33.1 432 7-469 32-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.6E-46 9E-51 398.8 39.4 428 7-461 33-534 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 2.6E-46 9E-51 396.0 35.0 417 7-468 28-536 (570)
9 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-45 1.1E-49 395.6 40.4 454 7-463 25-573 (680)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-45 1.1E-49 403.2 37.5 437 10-464 7-540 (844)
11 4eco_A Uncharacterized protein 100.0 2.9E-46 9.9E-51 398.3 26.7 419 7-464 81-601 (636)
12 3vq2_A TLR4, TOLL-like recepto 100.0 3.5E-45 1.2E-49 390.1 34.9 428 8-463 12-534 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 4E-45 1.4E-49 387.0 31.3 418 2-449 47-540 (570)
14 4ecn_A Leucine-rich repeat pro 100.0 2.8E-45 9.6E-50 396.9 25.9 419 7-464 323-841 (876)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-44 5.9E-49 380.2 30.0 425 7-467 26-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 7.8E-45 2.7E-49 380.1 24.2 431 7-468 21-486 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 9.8E-43 3.4E-47 373.6 38.0 452 8-484 53-619 (635)
18 4eco_A Uncharacterized protein 100.0 2.4E-43 8.3E-48 375.8 25.6 358 40-444 192-604 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 5.6E-43 1.9E-47 379.0 24.9 392 32-467 424-870 (876)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.5E-42 1.5E-46 362.1 26.1 430 6-468 30-515 (562)
21 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-42 1.6E-46 361.6 23.9 410 2-445 45-515 (549)
22 3v47_A TOLL-like receptor 5B a 100.0 6.7E-41 2.3E-45 344.4 30.8 385 9-447 12-415 (455)
23 2z7x_B TOLL-like receptor 1, v 100.0 7.9E-42 2.7E-46 357.3 17.9 408 2-445 40-486 (520)
24 3v47_A TOLL-like receptor 5B a 100.0 3.3E-39 1.1E-43 331.7 31.1 383 33-467 12-412 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-39 1.6E-43 345.1 31.5 414 2-445 71-585 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-38 2.3E-42 330.2 26.2 388 29-463 29-486 (562)
27 1o6v_A Internalin A; bacterial 100.0 7.2E-37 2.4E-41 314.7 32.3 346 6-442 45-390 (466)
28 1o6v_A Internalin A; bacterial 100.0 6.6E-37 2.3E-41 314.9 31.5 326 76-464 64-389 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 2E-37 6.8E-42 316.0 24.6 368 5-441 9-410 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 4.6E-37 1.6E-41 317.5 24.4 346 83-468 14-361 (477)
31 2id5_A Lingo-1, leucine rich r 100.0 7.7E-37 2.6E-41 315.9 25.7 345 58-445 14-361 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-36 3.9E-41 310.7 23.0 355 3-445 38-392 (457)
33 1jl5_A Outer protein YOPM; leu 100.0 1.9E-35 6.5E-40 301.4 23.5 361 2-444 29-433 (454)
34 3o6n_A APL1; leucine-rich repe 100.0 2.9E-35 9.8E-40 295.9 24.0 334 54-467 44-378 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-35 1.5E-39 298.9 23.7 332 2-425 59-396 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 5.9E-35 2E-39 293.6 23.1 314 103-468 43-357 (390)
37 3oja_B Anopheles plasmodium-re 100.0 4.1E-34 1.4E-38 303.0 24.2 333 54-466 50-383 (597)
38 4fmz_A Internalin; leucine ric 100.0 2.1E-33 7.3E-38 277.7 27.3 305 78-440 42-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 5.3E-34 1.8E-38 302.1 23.2 313 104-468 50-363 (597)
40 4fmz_A Internalin; leucine ric 100.0 9E-33 3.1E-37 273.2 28.8 305 5-392 42-346 (347)
41 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-33 8.3E-38 272.4 18.0 257 190-472 51-312 (313)
42 1xku_A Decorin; proteoglycan, 100.0 3.7E-32 1.3E-36 266.7 26.3 291 106-438 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-32 8.9E-37 268.0 24.4 290 106-438 34-331 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-35 5.3E-40 305.0 -3.5 265 6-281 2-298 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 4.9E-34 1.7E-38 293.7 6.7 391 30-441 2-441 (461)
46 1xku_A Decorin; proteoglycan, 100.0 1E-30 3.5E-35 256.4 29.5 243 32-334 32-277 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 1E-30 3.4E-35 256.7 25.4 285 129-460 34-330 (332)
48 1ogq_A PGIP-2, polygalacturona 100.0 7.1E-32 2.4E-36 262.0 16.4 251 165-441 50-305 (313)
49 3zyj_A Leucine-rich repeat-con 100.0 3.5E-29 1.2E-33 255.4 24.0 251 166-445 44-297 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 5.6E-29 1.9E-33 254.8 24.7 251 166-445 55-308 (452)
51 2z66_A Variable lymphocyte rec 100.0 1.2E-29 4.2E-34 246.0 17.5 232 190-445 29-266 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.2E-29 4.2E-34 251.1 17.7 282 103-445 29-319 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 1.8E-29 6.2E-34 249.9 18.1 280 78-418 29-316 (353)
54 3ogk_B Coronatine-insensitive 100.0 3.1E-31 1.1E-35 281.7 1.7 406 4-442 70-528 (592)
55 3zyj_A Leucine-rich repeat-con 100.0 5.3E-28 1.8E-32 246.7 25.4 228 165-417 64-293 (440)
56 3zyi_A Leucine-rich repeat-con 100.0 6.3E-28 2.2E-32 247.0 25.3 248 129-417 55-304 (452)
57 2z66_A Variable lymphocyte rec 100.0 2.3E-28 7.9E-33 237.0 19.1 252 192-468 10-266 (306)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-28 6.2E-33 235.2 16.1 249 192-466 14-264 (285)
59 3ogk_B Coronatine-insensitive 100.0 3E-30 1E-34 274.2 1.0 406 5-437 110-548 (592)
60 4fcg_A Uncharacterized protein 100.0 1.1E-27 3.7E-32 233.9 18.8 224 189-440 81-314 (328)
61 4fcg_A Uncharacterized protein 100.0 4E-27 1.4E-31 229.9 20.2 229 5-252 79-315 (328)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-26 4.6E-31 222.1 22.6 269 9-330 13-284 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-26 7.7E-31 241.4 25.2 260 107-444 42-301 (622)
64 3g06_A SSPH2 (leucine-rich rep 99.9 7.6E-26 2.6E-30 237.4 26.9 267 7-342 40-306 (622)
65 3o53_A Protein LRIM1, AGAP0063 99.9 5.7E-27 1.9E-31 228.1 15.9 219 187-440 32-250 (317)
66 1wwl_A Monocyte differentiatio 99.9 1.5E-27 5.1E-32 231.6 9.9 251 164-441 42-310 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 8.4E-28 2.9E-32 234.0 7.0 260 8-328 11-270 (317)
68 2p1m_B Transport inhibitor res 99.9 7.5E-29 2.6E-33 263.5 -1.1 402 4-440 63-519 (594)
69 3oja_A Leucine-rich immune mol 99.9 6.1E-27 2.1E-31 241.0 12.6 244 190-468 35-287 (487)
70 2p1m_B Transport inhibitor res 99.9 6.4E-29 2.2E-33 264.0 -4.9 409 5-438 103-542 (594)
71 2z62_A TOLL-like receptor 4, v 99.9 4.3E-25 1.5E-29 210.6 20.2 209 215-446 29-243 (276)
72 1wwl_A Monocyte differentiatio 99.9 6.6E-27 2.2E-31 227.1 6.0 252 27-333 39-309 (312)
73 3oja_A Leucine-rich immune mol 99.9 4.9E-26 1.7E-30 234.2 12.7 243 165-444 34-286 (487)
74 1p9a_G Platelet glycoprotein I 99.9 1.2E-24 4E-29 208.4 18.6 207 210-444 6-212 (290)
75 2o6q_A Variable lymphocyte rec 99.9 1.4E-23 4.8E-28 199.2 23.6 207 190-445 17-223 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 6.2E-24 2.1E-28 202.5 21.2 209 190-418 29-239 (276)
77 1p9a_G Platelet glycoprotein I 99.9 8.8E-24 3E-28 202.3 20.4 202 185-416 6-208 (290)
78 2o6q_A Variable lymphocyte rec 99.9 1.8E-23 6.1E-28 198.5 20.4 202 240-467 18-222 (270)
79 3goz_A Leucine-rich repeat-con 99.9 3E-24 1E-28 213.0 8.9 261 171-442 4-299 (362)
80 3rfs_A Internalin B, repeat mo 99.9 5.6E-23 1.9E-27 195.2 16.5 202 104-340 40-242 (272)
81 3rfs_A Internalin B, repeat mo 99.9 1.6E-22 5.6E-27 192.0 17.2 210 77-321 38-247 (272)
82 4glp_A Monocyte differentiatio 99.9 1.2E-22 4.3E-27 196.8 16.3 237 189-441 64-308 (310)
83 2xwt_C Thyrotropin receptor; s 99.9 1.5E-22 5.1E-27 188.5 16.1 196 214-437 31-236 (239)
84 2xwt_C Thyrotropin receptor; s 99.9 9.2E-23 3.1E-27 189.9 14.0 208 19-277 23-236 (239)
85 3goz_A Leucine-rich repeat-con 99.9 2E-23 6.7E-28 207.0 9.0 180 110-303 3-209 (362)
86 3m19_A Variable lymphocyte rec 99.9 1E-21 3.4E-26 184.2 18.1 191 267-475 35-232 (251)
87 2ca6_A RAN GTPase-activating p 99.9 1E-23 3.4E-28 211.3 4.5 92 352-443 213-319 (386)
88 2ast_B S-phase kinase-associat 99.9 9.3E-23 3.2E-27 200.4 10.8 233 165-445 70-311 (336)
89 2ast_B S-phase kinase-associat 99.9 4.3E-23 1.5E-27 202.8 8.3 223 190-437 48-282 (336)
90 4glp_A Monocyte differentiatio 99.9 2E-22 7E-27 195.3 12.6 226 7-252 64-308 (310)
91 4ay9_X Follicle-stimulating ho 99.9 1.4E-21 4.7E-26 192.7 18.7 223 165-413 30-256 (350)
92 2ca6_A RAN GTPase-activating p 99.9 2.1E-23 7.1E-28 209.0 4.6 251 155-419 23-319 (386)
93 4ay9_X Follicle-stimulating ho 99.9 6E-22 2.1E-26 195.3 14.9 208 10-235 12-223 (350)
94 1h6u_A Internalin H; cell adhe 99.9 2.1E-21 7.1E-26 187.7 17.5 193 29-252 39-231 (308)
95 1h6u_A Internalin H; cell adhe 99.9 1.7E-21 6E-26 188.2 16.4 194 185-416 37-230 (308)
96 3m19_A Variable lymphocyte rec 99.9 1.5E-20 5E-25 176.3 18.0 157 166-334 36-193 (251)
97 2v9t_B SLIT homolog 2 protein 99.8 3.9E-20 1.3E-24 169.4 14.0 155 270-444 14-169 (220)
98 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.6E-24 164.6 15.3 169 108-303 10-178 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 6.3E-20 2.2E-24 168.0 12.9 156 270-445 14-171 (220)
100 2o6s_A Variable lymphocyte rec 99.8 9.2E-20 3.2E-24 165.7 13.4 157 165-340 28-185 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 6.7E-24 164.7 15.1 158 293-469 14-172 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 1.6E-19 5.3E-24 165.3 13.1 156 293-468 14-170 (220)
103 3cvr_A Invasion plasmid antige 99.8 4.6E-19 1.6E-23 183.7 16.2 188 106-344 60-254 (571)
104 2xot_A Amphoterin-induced prot 99.8 2.1E-19 7E-24 177.9 11.7 179 241-444 21-206 (361)
105 3cvr_A Invasion plasmid antige 99.8 1.2E-18 4.1E-23 180.6 17.4 178 8-252 60-244 (571)
106 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.1E-23 166.7 15.2 169 213-440 45-213 (291)
107 3e6j_A Variable lymphocyte rec 99.8 2.8E-18 9.7E-23 158.1 15.5 157 269-445 21-177 (229)
108 3sb4_A Hypothetical leucine ri 99.8 1.3E-18 4.4E-23 170.0 12.8 260 6-297 48-328 (329)
109 1w8a_A SLIT protein; signaling 99.8 1.5E-18 5E-23 155.3 11.4 155 293-466 11-165 (192)
110 2xot_A Amphoterin-induced prot 99.8 1.7E-18 5.7E-23 171.4 13.0 180 107-304 20-203 (361)
111 3e6j_A Variable lymphocyte rec 99.8 7.4E-18 2.5E-22 155.3 16.4 155 292-467 21-176 (229)
112 1m9s_A Internalin B; cell inva 99.8 2.2E-18 7.4E-23 180.7 14.3 194 188-419 20-213 (605)
113 1h6t_A Internalin B; cell adhe 99.8 3.8E-18 1.3E-22 163.3 14.6 172 28-228 43-214 (291)
114 3sb4_A Hypothetical leucine ri 99.8 2.7E-18 9.2E-23 167.7 13.2 287 104-434 24-328 (329)
115 1m9s_A Internalin B; cell inva 99.8 8.6E-18 2.9E-22 176.2 15.8 196 166-399 22-217 (605)
116 1dce_A Protein (RAB geranylger 99.7 1E-20 3.5E-25 197.2 -9.9 189 28-253 346-548 (567)
117 4fdw_A Leucine rich hypothetic 99.7 2.3E-16 7.9E-21 157.2 21.6 265 6-303 112-383 (401)
118 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.3E-22 150.0 11.0 151 266-440 43-194 (197)
119 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.6E-22 157.6 10.5 167 216-442 21-187 (263)
120 4fdw_A Leucine rich hypothetic 99.7 6E-16 2.1E-20 154.2 22.3 242 29-303 111-358 (401)
121 2wfh_A SLIT homolog 2 protein 99.7 5.4E-17 1.8E-21 145.0 13.2 131 293-444 13-143 (193)
122 4ezg_A Putative uncharacterize 99.7 9.9E-17 3.4E-21 144.1 14.0 151 164-333 43-194 (197)
123 2wfh_A SLIT homolog 2 protein 99.7 3.9E-17 1.3E-21 145.9 11.2 131 323-468 13-144 (193)
124 1w8a_A SLIT protein; signaling 99.7 5.8E-17 2E-21 144.8 10.3 178 270-470 11-190 (192)
125 1xeu_A Internalin C; cellular 99.7 6.5E-17 2.2E-21 152.2 11.0 166 105-303 19-185 (263)
126 1dce_A Protein (RAB geranylger 99.7 2.8E-18 9.7E-23 178.8 1.0 109 321-445 442-551 (567)
127 4fs7_A Uncharacterized protein 99.7 2.5E-15 8.4E-20 150.5 20.9 332 19-408 59-393 (394)
128 4fs7_A Uncharacterized protein 99.7 4E-15 1.4E-19 148.9 21.5 222 181-437 154-376 (394)
129 4b8c_D Glucose-repressible alc 99.6 3.1E-17 1.1E-21 176.3 3.8 219 164-416 172-404 (727)
130 4b8c_D Glucose-repressible alc 99.6 1E-16 3.6E-21 172.3 7.6 144 181-339 216-360 (727)
131 2o6r_A Variable lymphocyte rec 99.6 2E-15 6.8E-20 133.1 13.3 134 292-445 9-142 (177)
132 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.9E-20 131.8 12.5 131 267-416 24-160 (168)
133 2ell_A Acidic leucine-rich nuc 99.6 7.7E-16 2.6E-20 134.5 9.7 134 5-141 22-160 (168)
134 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 9E-20 128.2 9.5 110 5-117 15-125 (149)
135 4gt6_A Cell surface protein; l 99.6 1.3E-13 4.4E-18 137.9 23.3 314 2-367 58-390 (394)
136 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 127.8 13.7 133 321-467 8-141 (177)
137 2je0_A Acidic leucine-rich nuc 99.6 8.8E-15 3E-19 124.9 9.1 112 165-283 17-129 (149)
138 3g39_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 123.1 11.9 111 321-445 10-120 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.6E-19 127.5 8.2 106 56-178 43-153 (176)
140 4gt6_A Cell surface protein; l 99.5 2.3E-12 8E-17 128.8 23.7 137 279-439 253-390 (394)
141 1ds9_A Outer arm dynein; leuci 99.5 3.4E-16 1.1E-20 140.7 -4.2 77 355-433 93-180 (198)
142 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 120.3 11.9 110 322-445 14-123 (174)
143 1a9n_A U2A', U2A'; complex (nu 99.5 6.1E-14 2.1E-18 123.3 9.5 111 184-303 14-126 (176)
144 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 119.1 11.9 109 356-467 10-119 (170)
145 2r9u_A Variable lymphocyte rec 99.4 4.9E-13 1.7E-17 117.0 12.0 107 358-467 15-122 (174)
146 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.1E-20 136.0 -4.2 134 259-416 40-185 (198)
147 3un9_A NLR family member X1; l 99.3 3.3E-14 1.1E-18 140.2 -3.7 91 189-280 101-196 (372)
148 2ifg_A High affinity nerve gro 99.3 2.9E-12 9.9E-17 125.9 9.6 92 352-444 28-120 (347)
149 2ifg_A High affinity nerve gro 99.3 5.4E-12 1.8E-16 123.9 10.6 109 358-468 11-121 (347)
150 3un9_A NLR family member X1; l 99.3 4.3E-13 1.5E-17 132.2 2.0 64 353-416 181-252 (372)
151 4h09_A Hypothetical leucine ri 99.3 9.1E-10 3.1E-14 109.4 23.6 74 351-426 282-355 (379)
152 4h09_A Hypothetical leucine ri 99.2 2E-09 6.8E-14 106.9 24.1 297 5-330 44-343 (379)
153 2ra8_A Uncharacterized protein 98.8 6.9E-09 2.3E-13 101.3 8.4 164 209-414 167-341 (362)
154 2ra8_A Uncharacterized protein 98.8 3.8E-09 1.3E-13 103.1 5.8 145 259-416 164-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1.4E-08 4.8E-13 89.4 1.7 62 354-415 92-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 2.7E-08 9.3E-13 87.5 2.0 41 211-251 33-78 (185)
157 3rw6_A Nuclear RNA export fact 98.4 8.8E-08 3E-12 88.5 2.8 81 352-433 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 3.6E-07 1.2E-11 84.4 5.4 64 29-93 168-233 (267)
159 3e4g_A ATP synthase subunit S, 98.1 8.9E-07 3E-11 75.8 2.6 89 29-117 59-151 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.5E-11 74.2 3.0 91 48-139 54-150 (176)
161 3rfe_A Platelet glycoprotein I 97.6 8.8E-05 3E-09 60.4 6.1 61 382-444 11-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 4.1E-05 1.4E-09 66.7 1.8 14 320-333 70-83 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 5.3E-05 1.8E-09 66.1 2.3 96 234-332 66-169 (197)
164 3rfe_A Platelet glycoprotein I 97.2 0.00062 2.1E-08 55.3 6.5 57 358-416 11-68 (130)
165 2lz0_A Uncharacterized protein 80.4 2.3 8E-05 32.0 4.8 49 16-65 5-53 (100)
166 2lz0_A Uncharacterized protein 72.0 11 0.00037 28.3 6.5 41 371-412 12-52 (100)
167 2k1k_A Ephrin type-A receptor 63.0 10 0.00034 22.6 3.6 8 505-512 17-24 (38)
168 2knc_B Integrin beta-3; transm 53.1 45 0.0015 23.6 6.3 9 527-535 42-50 (79)
169 2jwa_A Receptor tyrosine-prote 50.5 19 0.00064 22.2 3.3 8 505-512 15-22 (44)
170 2l9u_A Receptor tyrosine-prote 46.2 34 0.0012 19.5 3.6 15 504-518 12-26 (40)
171 2klu_A T-cell surface glycopro 44.1 15 0.00051 24.6 2.3 23 504-526 14-36 (70)
172 2lx0_A Membrane fusion protein 28.1 60 0.002 17.3 2.6 18 504-521 8-25 (32)
173 1hgv_A PH75 inovirus major coa 22.4 1.3E+02 0.0044 17.7 3.6 18 499-516 13-30 (46)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-56 Score=489.14 Aligned_cols=459 Identities=33% Similarity=0.468 Sum_probs=348.3
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
+.++++|++|+|++|++.+..|. +.++++|++|++++|.+++..|..|.++++|++|++++|.+.+.++.. .+++|
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L 271 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSL 271 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTC
T ss_pred cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCC
Confidence 35678888888888888876666 888888888888888888888888888888888888888887766532 67777
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccCCC-------------CC
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPI-------------CS 148 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~-------------~~ 148 (551)
++|++++|.+.+.++...+..+++|++|++++|.+ ..+|..+..+++|++|++++|.+++.+|. +.
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 77777777766566554444456777777777776 35666667777777777777766654442 34
Q ss_pred CCcccccCChhHhhh--------------------------cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccc
Q 046908 149 NNNFAGKLPRNMGIV--------------------------LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFS 202 (551)
Q Consensus 149 ~~~~~~~l~~~~~~~--------------------------l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 202 (551)
.+.+.+.+|..+... +++|++|++++|.+.+..|..+.++++|+.|++++|++.
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 445555555554432 334555555555555556666666666666666666666
Q ss_pred eeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCccccc
Q 046908 203 GELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGS 282 (551)
Q Consensus 203 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 282 (551)
+.+|..+ ..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++.
T Consensus 432 ~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 432 GTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-----IPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp SCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-----CCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc-----CCHHHhcCCCCCEEEccCCccCCc
Confidence 5555443 4466677777777766666666666677777777777776653 344477777777777777777777
Q ss_pred CCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchh--------------
Q 046908 283 LVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL-------------- 347 (551)
Q Consensus 283 ~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------- 347 (551)
.+..+ .+++|++|++++|.++ +.+|..+..+++|++|++++|++++.+|..+.....+.
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~------~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFS------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCE------EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred CChHHhcCCCCCEEECCCCccc------CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccc
Confidence 77666 7777788888777665 47888889999999999999999988888765432210
Q ss_pred ---------------------------------------------hHhhhccccCceEecCCCcCcccCCccccCCCCCc
Q 046908 348 ---------------------------------------------HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIR 382 (551)
Q Consensus 348 ---------------------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 382 (551)
...+..++.|+.|+|++|++++.+|..++++++|+
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 659 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred cccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCC
Confidence 01245578899999999999999999999999999
Q ss_pred EEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCC
Q 046908 383 ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHE 462 (551)
Q Consensus 383 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~ 462 (551)
.|+|++|++++.+|..+.++++|+.|||++|++++.+|..+..++.|++|++++|+++|.+|...++.++....+.|||.
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTE
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCccccCCCCCCCCC
Q 046908 463 LCGSLIRKKCSSALKP 478 (551)
Q Consensus 463 ~c~~~~~~~c~~~~~~ 478 (551)
+|+.++. .|......
T Consensus 740 Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 740 LCGYPLP-RCDPSNAD 754 (768)
T ss_dssp EESTTSC-CCCSCC--
T ss_pred hcCCCCc-CCCCCccC
Confidence 9999876 78765443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-52 Score=455.54 Aligned_cols=460 Identities=30% Similarity=0.398 Sum_probs=341.0
Q ss_pred CCCCCCCCCEEECcCCCCcccCCc--cCCCCCCCCEEEcccCcCccccchhc-cCCCCCCEeeCCCCccccccChhh--h
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQ--CLNNLTHLKVLDISNNQLSGKVPSTL-TNLTSLEYLDRFSINFQGTISINS--L 76 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~--~ 76 (551)
+++++++|++|||++|++.+.+|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+.+..+... +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 466778888888888887776666 77777777777777777776666554 566667777776666654433211 2
Q ss_pred ----------------------cCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCC-CCchhhhCCCCCCEE
Q 046908 77 ----------------------ANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIPSFLLQHYHLIFL 133 (551)
Q Consensus 77 ----------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L 133 (551)
..+++|++|++++|.+...++. +..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 4556666666666665544443 778888888888888884 667788888899999
Q ss_pred EccCCcccccCCC----------CCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccce
Q 046908 134 DLSNNKVVGNFPI----------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSG 203 (551)
Q Consensus 134 ~Ls~n~l~~~~~~----------~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 203 (551)
++++|.+++..|. +..+.+.+.+|..++..+++|++|++++|.+.+..|..+.++++|++|++++|++.+
T Consensus 253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 9999988876664 566777778888887766899999999999999999999999999999999999988
Q ss_pred eCChhhhhCCCCCCEEECcCCcccccCCcccCCCC-CCCEEecccccccCcCCC---------------------chhhH
Q 046908 204 ELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT-HLHWLYLDNNHFSGKMDD---------------------ANILV 261 (551)
Q Consensus 204 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~---------------------~~~~~ 261 (551)
.+|...+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+++..+. +.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 99988778888899999988888776666665554 555555555544321110 02344
Q ss_pred hhccCCCCCEEECCCCcccccCCCcc-cccccceeecccccccc------------------CccceeccCccccccCCC
Q 046908 262 QLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITG------------------DNKFFGRIPYQINELSNL 322 (551)
Q Consensus 262 ~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~------------------~~~~~~~~~~~~~~l~~L 322 (551)
.+..+++|++|++++|.+++..+..+ .+++|++|++++|.+++ .+.+.+.+|..+..+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 46667777777777777766655555 56666666666665542 233344667777777777
Q ss_pred ceEEecCCcccccCChhhhhhhch-------------hhHhhhccccCceEecCCCcCcccCCccc--------------
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRF-------------LHRFYSNLKYMAGLDLSSNELSGEIPREI-------------- 375 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------- 375 (551)
++|++++|++++.+|..+..++++ ....+..+++|+.|++++|.+++.+|..+
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 777777777777777776665554 12345677888888888888776666433
Q ss_pred --------------------------------------------------------cCCCCCcEEEcCCCCCCCcccccc
Q 046908 376 --------------------------------------------------------GQLQNIRALNLSNNFLSGAIPESF 399 (551)
Q Consensus 376 --------------------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~ 399 (551)
..+++|+.|++++|++++.+|..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 335678899999999999999999
Q ss_pred cCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCC
Q 046908 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHEL 463 (551)
Q Consensus 400 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~ 463 (551)
+++++|+.|+|++|++++.+|..+..++.|++||+++|+++|.+|. ...+..+..+++++|+..
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999999999999999999999999999999999999999999887 566778888888888643
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-52 Score=460.66 Aligned_cols=454 Identities=20% Similarity=0.215 Sum_probs=268.9
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccc-cchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK-VPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (551)
++|++|||++|.|++..+.+|.++++|++|+|++|...+. .|.+|.++++|++|+|++|.+.+.. +..|.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcccCEe
Confidence 4566666666666655566666666666666666633322 2555666666666666666665332 2446666666666
Q ss_pred EcccCcccccccC-CCccCCCCccEEEccCCCCCCC--chhhhCCCCCCEEEccCCcccccCCC--------------CC
Q 046908 86 LISSGSNMLQVKT-ETWHPTSQLKVLKLSDCHLHVI--PSFLLQHYHLIFLDLSNNKVVGNFPI--------------CS 148 (551)
Q Consensus 86 ~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l--~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------~~ 148 (551)
++++|.+....+. ..|..+++|++|++++|.+..+ +..+.++++|++|++++|.+++..+. +.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 6666655443322 2355666666666666666433 23456666666666666655432221 11
Q ss_pred CCcccccCChhHhh-----------------------------------------------------------------h
Q 046908 149 NNNFAGKLPRNMGI-----------------------------------------------------------------V 163 (551)
Q Consensus 149 ~~~~~~~l~~~~~~-----------------------------------------------------------------~ 163 (551)
.+.+.+..|..+.. .
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 22222222211110 0
Q ss_pred --cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCC
Q 046908 164 --LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241 (551)
Q Consensus 164 --l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 241 (551)
.++|+.|++++|.+.+..+..|..+++|+.|++++|++. .++...|.++++|++|++++|.+.+..+..|.++++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 134555555555555555555555555555555555555 33333344555555555555555555555555555555
Q ss_pred EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccC--------------cc
Q 046908 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGD--------------NK 307 (551)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--------------~~ 307 (551)
.|++++|.+....+.. |..+++|++|++++|.+++... +++|+.|++++|+++.. |.
T Consensus 342 ~L~L~~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQT-----FKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp EEECCSCCCCCCCSSC-----SCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred EEECCCCCCCccChhh-----hcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCc
Confidence 5555555555443332 4555555555555555544321 33444444444433310 00
Q ss_pred cee-ccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc-----ccCCccccCCCCC
Q 046908 308 FFG-RIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS-----GEIPREIGQLQNI 381 (551)
Q Consensus 308 ~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L 381 (551)
+.+ ..+..+..+++|+.|++++|++++..+... +..+++|+.|++++|.++ +..+..|.++++|
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQT----------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS----------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccc----------cccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 000 001113356777777777777764333221 345678888888888876 3445668889999
Q ss_pred cEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCC
Q 046908 382 RALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNH 461 (551)
Q Consensus 382 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~ 461 (551)
++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.. +..+..+++.+||
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np 558 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNK 558 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEEC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCC
Confidence 9999999999988888899999999999999999977776666 78999999999999888854 5678889999999
Q ss_pred CCCCcccc-------------------CCCCCCCCCCCCCCCC
Q 046908 462 ELCGSLIR-------------------KKCSSALKPPATPTEE 485 (551)
Q Consensus 462 ~~c~~~~~-------------------~~c~~~~~~~~~~~~~ 485 (551)
+.|+|+.. ..|..|....+.+...
T Consensus 559 ~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~ 601 (844)
T 3j0a_A 559 FICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFS 601 (844)
T ss_dssp CCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTT
T ss_pred cccccccHHHHHHHHhcCcccccccccCccCCchhhCCCcccc
Confidence 99988642 4677776655555333
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.6e-50 Score=426.56 Aligned_cols=445 Identities=21% Similarity=0.194 Sum_probs=275.5
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|+|++|+++++.|.+|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.+. +...+..+++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l-~~~~~~~l~~ 130 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI-DFIPLHNQKT 130 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG-GGSCCTTCTT
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC-CcchhccCCc
Confidence 356666777777777766666666677777777777777766666666666777777777776666642 2234666677
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCC-chhhhCCCCCC--EEEccCCcccccCCCCCCCc-------
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI-PSFLLQHYHLI--FLDLSNNKVVGNFPICSNNN------- 151 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~--~L~Ls~n~l~~~~~~~~~~~------- 151 (551)
|++|++++|.+.....+ .+.++++|++|++++|.+..+ +..+..+++|+ +|++++|.+++..|......
T Consensus 131 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp CCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred ccEEECCCCcccccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 77777776664432222 334467777777777777555 34566777777 67777777665443311000
Q ss_pred -----------------------------ccccCChhHhhhcC--CccEEEccCCcccccCCcccccCCCCcEEECcCCc
Q 046908 152 -----------------------------FAGKLPRNMGIVLQ--KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNN 200 (551)
Q Consensus 152 -----------------------------~~~~l~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 200 (551)
-...++...+..+. +++.|++++|.+.+..+..|..+++|+.|++++|+
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 00011111111111 34555555555554444445555555555555555
Q ss_pred cceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCC-Cc-------------------h--
Q 046908 201 FSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMD-DA-------------------N-- 258 (551)
Q Consensus 201 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~-------------------~-- 258 (551)
++ .+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ .. .
T Consensus 290 l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 290 LS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred cC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 54 444432 334555555555555554444444444555555555544432111 11 0
Q ss_pred hhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccC-ccccccCCCceEEecCCcccccC
Q 046908 259 ILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHI 336 (551)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 336 (551)
.+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.++. ..+ ..+..+++|++|++++|.+.+..
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV------KDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC------CTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC------cccchhhhCcccCCEEECCCCccCCcC
Confidence 02224555555555555555555544444 45555555555555441 222 22555566666666666655444
Q ss_pred ChhhhhhhchhhHhhhccccCceEecCCCcCccc---CCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCC
Q 046908 337 PNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE---IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413 (551)
Q Consensus 337 p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 413 (551)
|.. +..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..|.++++|+.|++++|
T Consensus 442 ~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 442 EQL-----------FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTT-----------TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred HHH-----------HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 433 46788899999999998762 3356888999999999999999888888999999999999999
Q ss_pred cCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCccc
Q 046908 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
++++..|..+..++.| +|++++|++++..|. ...+..++.+++.+||+.|+|+.
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9998889999999999 999999999987776 35567888999999999999974
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-48 Score=422.62 Aligned_cols=452 Identities=23% Similarity=0.215 Sum_probs=277.9
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
|+++++|++|+|++|++++..|.+|.++++|++|+|++|.++...+.+|.++++|++|++++|.+.+ ++...|.++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCC
Confidence 4556666666666666666666666666666666666666664444456666666666666666653 333456666777
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchh-h--hCCCCCCEEEccCCcccccCCC-------------
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF-L--LQHYHLIFLDLSNNKVVGNFPI------------- 146 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~--~~~~~L~~L~Ls~n~l~~~~~~------------- 146 (551)
++|++++|.+.. .++..+..+++|++|++++|.++.++.. + ..+++|++|++++|.+++..|.
T Consensus 124 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 124 ITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred CEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 777776665433 2333456666777777777776555432 2 2446677777777766543332
Q ss_pred --------------------------CCCCcccccCChhHhhhc--CCccEEEccCCcccccCCcccccCCCCcEEECcC
Q 046908 147 --------------------------CSNNNFAGKLPRNMGIVL--QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSR 198 (551)
Q Consensus 147 --------------------------~~~~~~~~~l~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 198 (551)
+.++.+.+..|..+. .+ ++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 112222222232222 23 3478888888877777777777778888888887
Q ss_pred CccceeCChh--------------------------------hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 199 NNFSGELPQP--------------------------------IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 199 n~l~~~~~~~--------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
|++.+..|.. .+..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 7776433321 23345566666666666666666666666666666666
Q ss_pred cccccCc--CCC---------------------chhhHhhccCCCCCEEECCCCcccccCC-Ccc-cccccceeeccccc
Q 046908 247 NNHFSGK--MDD---------------------ANILVQLSQLKSLELIDIFENSLSGSLV-SSF-NLSSVKHLYLQKNA 301 (551)
Q Consensus 247 ~n~l~~~--~~~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~L~~n~ 301 (551)
+|.+... ... ...+..+..+++|++|++++|.+.+..+ ..+ ++++|++|++++|.
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 6543211 000 0112234445555555555555544322 223 44555555555554
Q ss_pred cccC------------------ccc--eeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEe
Q 046908 302 ITGD------------------NKF--FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361 (551)
Q Consensus 302 l~~~------------------~~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~ 361 (551)
++.. +.+ .+.+|..+..+++|++|++++|++++..|. .|.++++|++|+
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~-----------~~~~l~~L~~L~ 510 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-----------MLEGLEKLEILD 510 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEE
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh-----------hhccccccCEEe
Confidence 4310 000 012344444555555555555555432222 246777788888
Q ss_pred cCCCcCcccCC--------ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEE
Q 046908 362 LSSNELSGEIP--------REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFN 433 (551)
Q Consensus 362 Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 433 (551)
+++|.+++..+ ..+.++++|++|++++|+++.+.+..|.++++|+.|++++|++++..+..|..+++|+.|+
T Consensus 511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 590 (680)
T 1ziw_A 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590 (680)
T ss_dssp CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence 88888774321 2367788888888888888866666788899999999999999877777788889999999
Q ss_pred CCCCccccCCCCC-c-cCCccCCcccCCCCCCCCccc
Q 046908 434 VSYNNLSGPTPDK-E-QFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 434 l~~N~l~~~~~~~-~-~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+++|++++..+.. . .+..+..+++.+|||.|+|+.
T Consensus 591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999998877652 2 567888999999999999974
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7e-49 Score=418.68 Aligned_cols=432 Identities=18% Similarity=0.150 Sum_probs=325.5
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
++|++|+|++|++++..+.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+.+.. +..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccCCEEE
Confidence 56888888888888777778888888888888888888777778888888888888888877443 35678888888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCC--CCchhhhCCCCCCEEEccCCcccccCCC----------------CC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH--VIPSFLLQHYHLIFLDLSNNKVVGNFPI----------------CS 148 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~Ls~n~l~~~~~~----------------~~ 148 (551)
+++|.+. .+++..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+++..+. +.
T Consensus 111 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 8877644 344445778888888888888885 4677888888888888888877654332 11
Q ss_pred CCcccccCChhHh-------------------------------------------------------------------
Q 046908 149 NNNFAGKLPRNMG------------------------------------------------------------------- 161 (551)
Q Consensus 149 ~~~~~~~l~~~~~------------------------------------------------------------------- 161 (551)
.+.+. .++...+
T Consensus 190 ~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 22222 1222222
Q ss_pred -------------hhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccc
Q 046908 162 -------------IVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG 228 (551)
Q Consensus 162 -------------~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 228 (551)
..+++|+.|++++|.+.. +| .+..+++|+.|++++|++ +.+|. + .+++|+.|++++|+..+
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCE
T ss_pred cccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCcc
Confidence 224455555555555542 23 556666777777777777 36662 2 57777777777775443
Q ss_pred cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccc
Q 046908 229 QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKF 308 (551)
Q Consensus 229 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 308 (551)
.. .+..+++|++|++++|.+++.. ..+..+..+++|++|++++|.+++.+.....+++|++|++++|.++.
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~---- 413 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSG---CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR---- 413 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEE---ECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES----
T ss_pred ch--hhccCCCCCEEECcCCccCCCc---chhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC----
Confidence 32 5667888888888888776532 12455788888888888888888766333378889999998888762
Q ss_pred eeccC-ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcc-cCCccccCCCCCcEEEc
Q 046908 309 FGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG-EIPREIGQLQNIRALNL 386 (551)
Q Consensus 309 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L 386 (551)
..| ..+..+++|++|++++|.+.+..|.. +.++++|+.|++++|.+++ ..|..+..+++|++|++
T Consensus 414 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 414 --VTEFSAFLSLEKLLYLDISYTNTKIDFDGI-----------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp --TTTTTTTTTCTTCCEEECTTSCCEECCTTT-----------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred --ccChhhhhccccCCEEECcCCCCCccchhh-----------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 334 46778889999999999988767665 4678899999999999997 47889999999999999
Q ss_pred CCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCC-ccCCcccCCCCCCCC
Q 046908 387 SNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFA-TFDESSYTGNHELCG 465 (551)
Q Consensus 387 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~-~~~~~~~~~n~~~c~ 465 (551)
++|++++..|..|.++++|++|++++|++++..|..|..+++|++|++++|+++...+....++ .++.+++.+||+.|+
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999998889999999999999999999999889999999999999999999997666555555 588999999999999
Q ss_pred cccc
Q 046908 466 SLIR 469 (551)
Q Consensus 466 ~~~~ 469 (551)
|+..
T Consensus 561 c~~~ 564 (606)
T 3vq2_A 561 CEHQ 564 (606)
T ss_dssp STTH
T ss_pred CccH
Confidence 9854
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-46 Score=398.80 Aligned_cols=428 Identities=20% Similarity=0.206 Sum_probs=317.9
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
+++++|+|++|+++++.|.+|.++++|++|+|++|.++++.|++|.++++|++|++++|.+.+..+ ..|.++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEee
Confidence 479999999999999889999999999999999999998999999999999999999999985544 5799999999999
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~ 165 (551)
+++|.+.. +++..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++ .++...+..++
T Consensus 112 L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~~l~ 177 (606)
T 3t6q_A 112 FIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-------------YLSKEDMSSLQ 177 (606)
T ss_dssp CTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-------------EECHHHHHTTT
T ss_pred ccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-------------ccChhhhhhhc
Confidence 99998554 44456899999999999999997763 34455999999999999998 56555555678
Q ss_pred Ccc--EEEccCCcccccCCcccccC---------------------------------------------------CCCc
Q 046908 166 KLI--YLDMPKNIFEGDIPYSIGEM---------------------------------------------------KELY 192 (551)
Q Consensus 166 ~L~--~L~L~~n~~~~~~~~~~~~l---------------------------------------------------~~L~ 192 (551)
+|+ .|++++|.+.+..|..+... .+|+
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888 88888888887766554321 1678
Q ss_pred EEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEE
Q 046908 193 MQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELI 272 (551)
Q Consensus 193 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 272 (551)
.|++++|++. .++...+..+++|++|++++|.++ ..|..+..+++|++|++++|.+.+.. +..+..+++|++|
T Consensus 258 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L 330 (606)
T 3t6q_A 258 SINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC-----QISASNFPSLTHL 330 (606)
T ss_dssp EEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG-----GGCGGGCTTCSEE
T ss_pred EEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc-----hhhhhccCcCCEE
Confidence 8899999987 777777888999999999999998 56778999999999999999998643 3458889999999
Q ss_pred ECCCCcccccCC-Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchh---
Q 046908 273 DIFENSLSGSLV-SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL--- 347 (551)
Q Consensus 273 ~l~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~--- 347 (551)
++++|.+.+..+ ..+ .+++|++|++++|.++.. ...+..+..+++|++|++++|++.+..|..+..++++.
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETS----DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE----EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccc----cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 999998875444 335 889999999999988620 11255677888888888888888866666654333320
Q ss_pred -----------hHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCc---ccccccCCCCCCEEeCCCC
Q 046908 348 -----------HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA---IPESFSNLKMTESLDLSHN 413 (551)
Q Consensus 348 -----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n 413 (551)
...+..+++|+.|++++|.+++..|..+.++++|++|++++|++++. .+..+..+++|+.|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 01244555566666666666555555556666666666666665542 1234555666666666666
Q ss_pred cCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCC
Q 046908 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNH 461 (551)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~ 461 (551)
++++..|..|..+++|++|++++|++++..|. ...+..+ .+++.+|.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 66655556666666666666666666555443 2233334 44444444
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-46 Score=396.03 Aligned_cols=417 Identities=20% Similarity=0.209 Sum_probs=324.6
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
+++++|+|++|++++..+.+|.++++|++|+|++|.+++..+++|.++++|++|++++|.+.+ ++...|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 479999999999998888899999999999999999998888899999999999999999884 4556799999999999
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCC--CchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhc
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV--IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l 164 (551)
+++|.+. .++...+..+++|++|++++|.+.. +|..+.++++|++|++++|.+++. +...+..+
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l 172 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------------YCTDLRVL 172 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-------------CGGGGHHH
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-------------cHHHccch
Confidence 9998744 4444468999999999999999965 789999999999999999998742 22222223
Q ss_pred CCc----cEEEccCCcccccCC----------------------------------------------------------
Q 046908 165 QKL----IYLDMPKNIFEGDIP---------------------------------------------------------- 182 (551)
Q Consensus 165 ~~L----~~L~L~~n~~~~~~~---------------------------------------------------------- 182 (551)
++| +.+++++|.+.+..+
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred hccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 333 444444444443333
Q ss_pred -----------------------cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCC
Q 046908 183 -----------------------YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH 239 (551)
Q Consensus 183 -----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 239 (551)
..+..+++|+.|++++|.+. .+|..+. .+ +|++|++++|.+.. .|. ..+++
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~-~~-~L~~L~l~~n~~~~-l~~--~~l~~ 326 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY-NF-GWQHLELVNCKFGQ-FPT--LKLKS 326 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS-CC-CCSEEEEESCBCSS-CCB--CBCSS
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc-cC-CccEEeeccCcccc-cCc--ccccc
Confidence 34444555555555555554 4554432 23 56666666665542 222 34556
Q ss_pred CCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccC--CCcc-cccccceeeccccccccCccceeccCccc
Q 046908 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL--VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQI 316 (551)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 316 (551)
|+.|++++|.+....+ ...+++|++|++++|.+++.. +..+ .+++|++|++++|.++ .++..+
T Consensus 327 L~~L~l~~n~~~~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~ 392 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFS-------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-------TMSSNF 392 (570)
T ss_dssp CCEEEEESCBSCCBCC-------CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-------EEEEEE
T ss_pred cCEEeCcCCccccccc-------cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-------cccccc
Confidence 6666666665544221 256788888888888887654 3334 7888999999988876 455558
Q ss_pred cccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCC-Ccc
Q 046908 317 NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS-GAI 395 (551)
Q Consensus 317 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 395 (551)
..+++|++|++++|.+.+..|... |..+++|++|++++|.+.+..|..+.++++|++|++++|+++ +.+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSV----------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCT----------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccCCCCEEEccCCccccccchhh----------hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 888999999999999886555322 578899999999999999889999999999999999999997 568
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCccc
Q 046908 396 PESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 396 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
|..+..+++|+.|++++|++++..|..|..+++|++|++++|++++..+. ...+..++.+++.+|++.|+|+.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88999999999999999999988899999999999999999999988776 56778899999999999999874
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-45 Score=395.59 Aligned_cols=454 Identities=22% Similarity=0.206 Sum_probs=324.4
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
+++++|+|++|++++..+.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+. .++...|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 58999999999999888889999999999999999999999999999999999999999988 56666799999999999
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCC-chhhhCCCCCCEEEccCCcccccCCC--------------CCCCc
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI-PSFLLQHYHLIFLDLSNNKVVGNFPI--------------CSNNN 151 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------~~~~~ 151 (551)
+++|.+ ..+++..|..+++|++|++++|.+... |..+.++++|++|++++|.+++..+. +..+.
T Consensus 104 L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCcc-CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 999975 456666899999999999999999554 56788999999999999998753321 33444
Q ss_pred ccccCChhHhh--------------------------hcCCccEEEccCCcccccCCcccccCCC--CcEEECcCCccce
Q 046908 152 FAGKLPRNMGI--------------------------VLQKLIYLDMPKNIFEGDIPYSIGEMKE--LYMQDLSRNNFSG 203 (551)
Q Consensus 152 ~~~~l~~~~~~--------------------------~l~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~L~~n~l~~ 203 (551)
+.+..|..+.. ..++|+.|++++|.+.+..|..|..++. |+.|++++|++.
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~- 261 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN- 261 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-
Confidence 44433332211 1245677777777777777777777654 888888888887
Q ss_pred eCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhH----hhccCCCCCEEECCCCcc
Q 046908 204 ELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILV----QLSQLKSLELIDIFENSL 279 (551)
Q Consensus 204 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~l 279 (551)
.++...+..+++|++|++++|.+.+..+..|.++++|++|++++|...+......+|. .|..+++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 4444455678888888888888888777778888888888887665432111111111 477788888888888888
Q ss_pred cccCCCcc-cccccceeecccccccc----------------------CccceeccCccccccCCCceEEecCCcccccC
Q 046908 280 SGSLVSSF-NLSSVKHLYLQKNAITG----------------------DNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 336 (551)
Q Consensus 280 ~~~~~~~~-~~~~L~~L~L~~n~l~~----------------------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 336 (551)
++..+..+ ++++|++|++++|.++. .+.+.+..|.++..+++|++|++++|++.+.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 88877777 77888888887775321 23333455667778888888888888887666
Q ss_pred C-hhhhhhhch-------------hhHhhhccccCceEecCCCcCc--ccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 337 P-NELCHVSRF-------------LHRFYSNLKYMAGLDLSSNELS--GEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 337 p-~~~~~~~~l-------------~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
| ..+..++.+ ....|..+++|+.|++++|.+. +..|..+.++++|++|++++|++++..+..|.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 5 333322222 1223444555555555555554 34566667777777777777777766666677
Q ss_pred CCCCCCEEeCCCCcCcccCC--------CCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCC
Q 046908 401 NLKMTESLDLSHNRLSGHIP--------PQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHEL 463 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p--------~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~ 463 (551)
++++|+.|++++|++++..+ ..|..+++|++|++++|+++...+. ...+..++.+++.+|...
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 77777777777777764321 2356677777777777777654443 445666666777666543
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-45 Score=403.20 Aligned_cols=437 Identities=22% Similarity=0.221 Sum_probs=328.1
Q ss_pred CEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEccc
Q 046908 10 FELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISS 89 (551)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 89 (551)
+..|.++++++. +|. ..++|++|+|++|.+++..|..|.++++|++|++++|...+.++...|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 578889999984 554 4589999999999999889999999999999999999888788778899999999999999
Q ss_pred CcccccccCCCccCCCCccEEEccCCCCCC-Cchh--hhCCCCCCEEEccCCcccccCCC-------------CCCCccc
Q 046908 90 GSNMLQVKTETWHPTSQLKVLKLSDCHLHV-IPSF--LLQHYHLIFLDLSNNKVVGNFPI-------------CSNNNFA 153 (551)
Q Consensus 90 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~--~~~~~~L~~L~Ls~n~l~~~~~~-------------~~~~~~~ 153 (551)
|.+. .+.++.|.++++|++|++++|.+.. +|.. +.++++|++|++++|.+++..+. +..+.+.
T Consensus 83 N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9855 4555689999999999999999954 5554 88999999999999998764331 3344455
Q ss_pred ccCChhHhhhc--CCccEEEccCCcccccCCcccccCCC------CcEEECcCCccceeCChhhhh--------------
Q 046908 154 GKLPRNMGIVL--QKLIYLDMPKNIFEGDIPYSIGEMKE------LYMQDLSRNNFSGELPQPIVS-------------- 211 (551)
Q Consensus 154 ~~l~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~-------------- 211 (551)
+..+..+.. + ++|+.|+++.|.+.+..|..+..+.+ |+.|++++|++.+.++..+..
T Consensus 162 ~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 444444432 2 56666777777666666655555544 888888888766544433221
Q ss_pred ---------------------C--CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCC
Q 046908 212 ---------------------G--CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKS 268 (551)
Q Consensus 212 ---------------------~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 268 (551)
+ .++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+.. |..+++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----~~~l~~ 315 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-----FYGLDN 315 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-----TTTCSS
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-----hcCCCC
Confidence 1 256888888888888777788888888888888888887654433 777888
Q ss_pred CCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCccccc------------
Q 046908 269 LELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGH------------ 335 (551)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------ 335 (551)
|++|++++|.+++..+..+ ++++|++|++++|.++. ..+..+..+++|++|++++|.+++.
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~ 389 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI------IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC------CCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEE
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc------cChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccC
Confidence 8888888888877777666 77888888888887762 2234566777777777777776531
Q ss_pred ------CChhhhhhhc----------h-hhHhhhccccCceEecCCCcCcccCCc-cccCCCCCcEEEcCCCCCC-----
Q 046908 336 ------IPNELCHVSR----------F-LHRFYSNLKYMAGLDLSSNELSGEIPR-EIGQLQNIRALNLSNNFLS----- 392 (551)
Q Consensus 336 ------~p~~~~~~~~----------l-~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~----- 392 (551)
+|.....+.. + ....+..+++|+.|++++|.+++..+. .+..+++|++|++++|.++
T Consensus 390 ~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp SCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred CCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc
Confidence 1111100000 0 011235788999999999998854433 4566889999999999987
Q ss_pred CcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 393 GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
+..+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.... ..++.+++++|....
T Consensus 470 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA 540 (844)
T ss_dssp CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence 34456788999999999999999999999999999999999999999987766433 677777877776544
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-46 Score=398.31 Aligned_cols=419 Identities=19% Similarity=0.274 Sum_probs=217.8
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCc------c---------------------------ccchhcc-
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLS------G---------------------------KVPSTLT- 52 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~---------------------------~~~~~~~- 52 (551)
.+++.|+|++|++.|.+|.+|+++++|++|+|++|.+. + ..|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999551 1 0000000
Q ss_pred ------------------CCCCCCEeeCC--CCccccccChhhhcCCCCCCEEEcccCccccc-----------------
Q 046908 53 ------------------NLTSLEYLDRF--SINFQGTISINSLANHSKLEVLLISSGSNMLQ----------------- 95 (551)
Q Consensus 53 ------------------~l~~L~~L~L~--~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------- 95 (551)
....++.+.+. .|.+++ +|. .+.++++|++|++++|.+.+.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 00111111111 344444 442 355555555555555554442
Q ss_pred ccCCCcc--CCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCc-ccccCCCCCCCcccccCChhHhhh-----cCC
Q 046908 96 VKTETWH--PTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNK-VVGNFPICSNNNFAGKLPRNMGIV-----LQK 166 (551)
Q Consensus 96 ~~~~~~~--~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~l~~~~~~~-----l~~ 166 (551)
+|. .+. .+++|++|++++|.+ ..+|..+.++++|++|++++|. +++. .+|..++.. +++
T Consensus 239 ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-----------~lp~~~~~L~~~~~l~~ 306 (636)
T 4eco_A 239 KTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE-----------QLKDDWQALADAPVGEK 306 (636)
T ss_dssp TTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH-----------HHHHHHHHHHHSGGGGT
T ss_pred Cch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc-----------cchHHHHhhhccccCCC
Confidence 332 233 555555555555554 4455555555555555555554 4310 234444321 255
Q ss_pred ccEEEccCCcccccCCc--ccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCC-CCEE
Q 046908 167 LIYLDMPKNIFEGDIPY--SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH-LHWL 243 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 243 (551)
|+.|++++|.+. .+|. .+.++++|+.|++++|++.|.+| .+..+++|++|++++|++. .+|..+..+++ |++|
T Consensus 307 L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 307 IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 555555555555 4444 55555555555555555555555 3344555555555555555 44444555555 5555
Q ss_pred ecccccccCcCCCchhhHhhccC--CCCCEEECCCCcccccCCCcc--------cccccceeeccccccccCccceeccC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQL--KSLELIDIFENSLSGSLVSSF--------NLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~--------~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
++++|.++.++ ..+..+ ++|++|++++|.+++..+..+ .+++|++|++++|.++ .+|
T Consensus 383 ~Ls~N~l~~lp------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-------~lp 449 (636)
T 4eco_A 383 SFAHNKLKYIP------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-------KFP 449 (636)
T ss_dssp ECCSSCCSSCC------SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-------SCC
T ss_pred EccCCcCcccc------hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-------cCC
Confidence 55555555221 113322 255555555555555433322 2345555555555554 344
Q ss_pred cc-ccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcccc--CCCCCcEEEcCCCC
Q 046908 314 YQ-INELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG--QLQNIRALNLSNNF 390 (551)
Q Consensus 314 ~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~ 390 (551)
.. +..+++|++|++++|+++ .+|..+..... ..+.++++|+.|+|++|.++ .+|..+. .+++|++|++++|+
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN---ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCS-BCCSSSSEETT---EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred HHHHccCCCCCEEECCCCCCC-CcCHHHhcccc---ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 33 233555555555555555 44433211000 00112235555555555555 4454444 55555555555555
Q ss_pred CCCcccccccCCCCCCEEeC------CCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 391 LSGAIPESFSNLKMTESLDL------SHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 391 l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
+++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|.. ..+.+..+++.+|++.|
T Consensus 525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 554 4555555555555555 33445555555555555555555555555 233332 12455555555555554
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.5e-45 Score=390.08 Aligned_cols=428 Identities=18% Similarity=0.133 Sum_probs=313.9
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
.-++++.++++++ .+|..+. ++|++|+|++|.+++..+.+|.++++|++|++++|.+.+. +...|.++++|++|++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeEC
Confidence 3568999999998 5665554 8999999999999988888999999999999999999854 4467999999999999
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccc-cCCC------------CCCCccc
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVG-NFPI------------CSNNNFA 153 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~-~~~~------------~~~~~~~ 153 (551)
++|.+. .++++.|.++++|++|++++|.+..++ ..+.++++|++|++++|.+++ .+|. +..+.+.
T Consensus 88 s~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 88 TGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 999854 455567999999999999999997776 679999999999999999875 3343 4445555
Q ss_pred ccCChhHhhhcCC----ccEEEccCCcccccCCcccccCCCCcEEECcCCccce--------------------------
Q 046908 154 GKLPRNMGIVLQK----LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSG-------------------------- 203 (551)
Q Consensus 154 ~~l~~~~~~~l~~----L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------- 203 (551)
+..+..+.. +++ +..+++++|.+.+..+..+... +|+.|++++|.+.+
T Consensus 167 ~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 167 TITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp EECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 433333322 332 3356666666665544444433 67777777665431
Q ss_pred --------------------------------eCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccccccc
Q 046908 204 --------------------------------ELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFS 251 (551)
Q Consensus 204 --------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 251 (551)
.+|. +..+++|+.|++++|.+... + .+..+++|++|++++|.+.
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCCS
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccCc
Confidence 0111 22344555555555555332 2 4444555555555555442
Q ss_pred CcCCC--------------chhhHhhccCCCCCEEECCCCcccccC--CCcc-cccccceeeccccccccCccceeccCc
Q 046908 252 GKMDD--------------ANILVQLSQLKSLELIDIFENSLSGSL--VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPY 314 (551)
Q Consensus 252 ~~~~~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (551)
.++.. ......+..+++|++|++++|.+++.. +..+ .+++|++|++++|.++ .+|.
T Consensus 321 ~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~ 393 (606)
T 3vq2_A 321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-------IMSA 393 (606)
T ss_dssp SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-------EECC
T ss_pred ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-------cchh
Confidence 21100 000012556677777777777776653 3334 6777777777777766 5666
Q ss_pred cccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCC-
Q 046908 315 QINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSG- 393 (551)
Q Consensus 315 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 393 (551)
.+..+++|++|++++|++.+..|.. .|..+++|+.|++++|.+++..|..+.++++|++|++++|++++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFS----------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTT----------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred hccCCCCCCeeECCCCccCCccChh----------hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 7777888888888888877555522 25788999999999999998899999999999999999999997
Q ss_pred cccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCC
Q 046908 394 AIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHEL 463 (551)
Q Consensus 394 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~ 463 (551)
..|..|.++++|++|++++|++++..|..|..+++|++|++++|++++..|. ...+..++.+++.+|...
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 4788899999999999999999999999999999999999999999988665 566778888999988765
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-45 Score=387.00 Aligned_cols=418 Identities=18% Similarity=0.173 Sum_probs=352.4
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|+|++|+++++.+.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+.+. +...+..+++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS-TTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC-CCcccccccc
Confidence 578999999999999999988889999999999999999999988889999999999999999998853 4345899999
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCC----CEEEccCCcccccCCCCCCC------
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHL----IFLDLSNNKVVGNFPICSNN------ 150 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L----~~L~Ls~n~l~~~~~~~~~~------ 150 (551)
|++|++++|.+.....+..|..+++|++|++++|.+..++ ..+..+++| ++|++++|.+.+..|.....
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 9999999998665333456899999999999999997664 466667777 78999988877544421100
Q ss_pred ---------------------------------------------------------------cccccCChhHhhhcCCc
Q 046908 151 ---------------------------------------------------------------NFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 151 ---------------------------------------------------------------~~~~~l~~~~~~~l~~L 167 (551)
.+.+.++..+ ..+++|
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L 284 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNV 284 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTC
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh-cCcCcc
Confidence 1222233333 347899
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|.. .+++|+.|++++|.+.+..+. ..+++|++|++++
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~ 356 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred cEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence 99999999998 577788888 9999999999998 78863 588999999999998766554 7899999999999
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccC-ccccccCCCceEE
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLL 326 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~ 326 (551)
|.+++.. ..+..+..+++|++|++++|.+.+..+....+++|++|++++|.++. ..+ ..+..+++|++|+
T Consensus 357 n~l~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 357 NGLSFKG---CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------MSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp SCCBEEE---EEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES------CTTSCTTTTCTTCCEEE
T ss_pred CccCccc---cccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc------ccchhhhhcCCCCCEEe
Confidence 9987532 22556889999999999999999887763389999999999998872 333 4688899999999
Q ss_pred ecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc-ccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046908 327 LRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS-GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 327 l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
+++|.+.+..|.. |.++++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..|.++++|
T Consensus 428 l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 428 ISHTHTRVAFNGI-----------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp CTTSCCEECCTTT-----------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcCCcccccchhh-----------hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 9999999777665 477889999999999997 5788999999999999999999998889999999999
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccC
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQF 449 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~ 449 (551)
+.|++++|++++..|..|..+++|+.+++++|+++|.+|....+
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 99999999999888888999999999999999999999875443
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-45 Score=396.91 Aligned_cols=419 Identities=19% Similarity=0.245 Sum_probs=288.7
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEc-ccCcCccccchhc----------------------------------
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDI-SNNQLSGKVPSTL---------------------------------- 51 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~---------------------------------- 51 (551)
.+++.|+|++|++.|.+|.+|+++++|+.|+| ++|.+++..|-.-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8887654422110
Q ss_pred -----------------cCCCCCCEeeCC--CCccccccChhhhcCCCCCCEEEcccCccccc-----------------
Q 046908 52 -----------------TNLTSLEYLDRF--SINFQGTISINSLANHSKLEVLLISSGSNMLQ----------------- 95 (551)
Q Consensus 52 -----------------~~l~~L~~L~L~--~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------- 95 (551)
.....++.+.+. .|.+.+ +|. .+.++++|++|++++|.+.+.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 111223333333 256665 553 477788888888888776652
Q ss_pred ccCCC-ccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCc-ccccCCCCCCCcccccCChhHhh------hcCC
Q 046908 96 VKTET-WHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNK-VVGNFPICSNNNFAGKLPRNMGI------VLQK 166 (551)
Q Consensus 96 ~~~~~-~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~l~~~~~~------~l~~ 166 (551)
+|... |..+++|++|++++|.+ ..+|..+.++++|++|++++|. +++. .+|..++. .+++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~-----------~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA-----------QLKADWTRLADDEDTGPK 549 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH-----------HHHHHHHHHHHCTTTTTT
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc-----------cchHHHHhhhhcccccCC
Confidence 44432 33778888888888876 6777778888888888888876 6520 24544432 2347
Q ss_pred ccEEEccCCcccccCCc--ccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCC-CCEE
Q 046908 167 LIYLDMPKNIFEGDIPY--SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH-LHWL 243 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 243 (551)
|+.|++++|.+. .+|. .+.++++|+.|++++|++. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|
T Consensus 550 L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred ccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 888888888887 6666 7778888888888888877 777 4566778888888888777 56667777777 8888
Q ss_pred ecccccccCcCCCchhhHhhccCC--CCCEEECCCCcccccCCCcc------cccccceeeccccccccCccceeccCcc
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLK--SLELIDIFENSLSGSLVSSF------NLSSVKHLYLQKNAITGDNKFFGRIPYQ 315 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (551)
++++|.++.++ ..+..++ +|+.|++++|.+.+..+... ..++|++|++++|.++ .+|..
T Consensus 625 ~Ls~N~L~~lp------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-------~lp~~ 691 (876)
T 4ecn_A 625 GFSHNKLKYIP------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-------KFPTE 691 (876)
T ss_dssp ECCSSCCCSCC------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-------SCCHH
T ss_pred ECcCCCCCcCc------hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-------ccCHH
Confidence 88888776332 2244443 37888888888776554322 3457788888888776 56655
Q ss_pred c-cccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcccc--CCCCCcEEEcCCCCCC
Q 046908 316 I-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG--QLQNIRALNLSNNFLS 392 (551)
Q Consensus 316 ~-~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~ 392 (551)
+ ..+++|+.|++++|++. .+|..+..... ....++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+++
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~---~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT-SIPENSLKPKD---GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS-CCCTTSSSCTT---SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred HHccCCCCCEEECCCCcCC-ccChHHhcccc---ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC
Confidence 4 36778888888888777 66654421110 00123457788888888777 6677765 7778888888888887
Q ss_pred CcccccccCCCCCCEEeCCC------CcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 393 GAIPESFSNLKMTESLDLSH------NRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~------n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
+ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|++ +.+|.. ..+.+..+++++|++..
T Consensus 767 ~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred c-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 5 566677778888887765 667777777777788888888888887 445543 23567777777777654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-44 Score=380.22 Aligned_cols=425 Identities=18% Similarity=0.167 Sum_probs=304.1
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
++|++|+|++|++++..|.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+.+ ++...+.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEE
Confidence 478888888888887778888888888888888888887777888888888888888888874 4556688888888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCC-CCCCc-hhhhCCCCCCEEEccCCcccccCCCC------------CCCcc
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCH-LHVIP-SFLLQHYHLIFLDLSNNKVVGNFPIC------------SNNNF 152 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~------------~~~~~ 152 (551)
+++|.+.....+..+..+++|++|++++|. ++.+| ..+..+++|++|++++|.+++..|.. ..+.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 888876543334467888888888888887 46666 46788888888888888887654431 11111
Q ss_pred cccCChhHhhhcCCccEEEccCCcccccC--C-cccccCCCCcEEECcCCccceeCChhh---hhCCCCCCEEECcCCcc
Q 046908 153 AGKLPRNMGIVLQKLIYLDMPKNIFEGDI--P-YSIGEMKELYMQDLSRNNFSGELPQPI---VSGCVALDLFDLSNNNF 226 (551)
Q Consensus 153 ~~~l~~~~~~~l~~L~~L~L~~n~~~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l 226 (551)
+.+|...+..+++|+.|++++|.+.+.. + .....+++|+.|++++|.+.+..+..+ +..+++|+.+++++|.+
T Consensus 185 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 185 -AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp -TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred -cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 1345555555778888888888777542 1 123346677777777777764433332 23456777777777765
Q ss_pred cccCC------cccCCC-----------------------------CCCCEEecccccccCcCCCchhhHhh-ccCCCCC
Q 046908 227 FGQIF------PKYMNL-----------------------------THLHWLYLDNNHFSGKMDDANILVQL-SQLKSLE 270 (551)
Q Consensus 227 ~~~~~------~~~~~l-----------------------------~~L~~L~L~~n~l~~~~~~~~~~~~~-~~l~~L~ 270 (551)
.+... ..+..+ ++|+.|++++|.+.. +|..+ ..+++|+
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~------ip~~~~~~l~~L~ 337 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL------VPCSFSQHLKSLE 337 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC------CCHHHHHHCTTCC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc------CCHHHHhcCcccc
Confidence 54211 112223 355666666665542 33333 5678888
Q ss_pred EEECCCCcccccCC---Ccc-cccccceeeccccccccCccceeccC---ccccccCCCceEEecCCcccccCChhhhhh
Q 046908 271 LIDIFENSLSGSLV---SSF-NLSSVKHLYLQKNAITGDNKFFGRIP---YQINELSNLHVLLLRGNSLQGHIPNELCHV 343 (551)
Q Consensus 271 ~L~l~~n~l~~~~~---~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 343 (551)
+|++++|.+++..+ ..+ .+++|++|++++|.++ .++ ..+..+++|++|++++|+++ .+|..+
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--- 406 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-------SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC--- 406 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-------CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC---
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCccc-------ccccchhhhhcCCCCCEEECCCCCCc-cCChhh---
Confidence 88888888876542 223 6778888888888776 333 34677788888888888887 566543
Q ss_pred hchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCC
Q 046908 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL 423 (551)
Q Consensus 344 ~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 423 (551)
..+++|++|++++|.++ .+|..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. .
T Consensus 407 --------~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 407 --------QWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp --------CCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred --------cccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence 55677888888888877 344333 257888888888887543 57899999999999998 6676 4
Q ss_pred CCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 424 TGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 424 ~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
..++.|++|++++|++++.+|. ...+..+..+++.+|++.|+|+
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 6789999999999999998886 5678889999999999999997
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.8e-45 Score=380.06 Aligned_cols=431 Identities=21% Similarity=0.198 Sum_probs=332.2
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
++|++|+|++|++++..|.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+. .++.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEe
Confidence 57888888888888777778888888888888888888777888888888888888888877 34432 788888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCC--CEEEccCCcc--cccCCC-------------CCC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHL--IFLDLSNNKV--VGNFPI-------------CSN 149 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L--~~L~Ls~n~l--~~~~~~-------------~~~ 149 (551)
+++|.+.....+..|..+++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|. +..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 888876553333467888888888888888855 345666667 8888888877 443332 122
Q ss_pred CcccccCChhHhhhcCCccEEEccCCc-------ccccCCcccccCCCCcEEECcCCccceeCChhhhh--CCCCCCEEE
Q 046908 150 NNFAGKLPRNMGIVLQKLIYLDMPKNI-------FEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVS--GCVALDLFD 220 (551)
Q Consensus 150 ~~~~~~l~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~ 220 (551)
+.+.+.++...+..+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+..+..... ..++|++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 334445555555567888888888886 555555 6788899999999988876543332221 146899999
Q ss_pred CcCCcccccCCccc-----CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccccee
Q 046908 221 LSNNNFFGQIFPKY-----MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHL 295 (551)
Q Consensus 221 L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 295 (551)
+++|++.+..|..+ ..+++|+.+++++|.+ ..+.. .+.. +..-.+|+.|++++|.+...... ..+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~-~~~~-~~~~~~L~~L~l~~n~l~~~~~~-~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS-YIYE-IFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTH-HHHH-HHHTCCCSEEEEESSCCCCCCCC-SSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchh-hhhc-ccccCceeEEEcCCCccccccch-hhCCcccEE
Confidence 99999998888887 8999999999999988 32211 1211 22236899999999998765421 268999999
Q ss_pred eccccccccCccceeccCccccccCCCceEEecCCcccc--cCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCc
Q 046908 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG--HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPR 373 (551)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 373 (551)
++++|.+++ .+|..+..+++|++|++++|++++ .+|. .+..+++|+.|++++|.+++.+|.
T Consensus 330 ~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 330 DFSNNLLTD------TVFENCGHLTELETLILQMNQLKELSKIAE-----------MTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp ECCSSCCCT------TTTTTCCCCSSCCEEECCSSCCCBHHHHHH-----------HHTTCTTCCEEECCSSCCBCCGGG
T ss_pred EeECCccCh------hhhhhhccCCCCCEEEccCCccCccccchH-----------HHhhCCCCCEEECCCCcCCccccc
Confidence 999998873 578888999999999999999984 2222 257889999999999999975665
Q ss_pred -cccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCc
Q 046908 374 -EIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFAT 451 (551)
Q Consensus 374 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~ 451 (551)
.+..+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+. ...+..
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 488899999999999999877776654 79999999999999 7787777999999999999999976655 566778
Q ss_pred cCCcccCCCCCCCCccc
Q 046908 452 FDESSYTGNHELCGSLI 468 (551)
Q Consensus 452 ~~~~~~~~n~~~c~~~~ 468 (551)
+..+++.+|++.|+|+.
T Consensus 470 L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCEEECCSSCBCCCHHH
T ss_pred ccEEECcCCCCcccCCc
Confidence 88999999999999874
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.8e-43 Score=373.59 Aligned_cols=452 Identities=19% Similarity=0.171 Sum_probs=330.6
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
++++|||++|+|+++.+.+|.++++|++|+|++|.|+++.+++|.++++|++|+|++|.+. .++...|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence 7999999999999888899999999999999999999888899999999999999999988 567788999999999999
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCC--CchhhhCCCCCCEEEccCCcccccCCC----------------CCC
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV--IPSFLLQHYHLIFLDLSNNKVVGNFPI----------------CSN 149 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~Ls~n~l~~~~~~----------------~~~ 149 (551)
++|.+ ..+++..|..+++|++|++++|.+.. +|..+..+++|++|++++|.+++..+. +..
T Consensus 132 s~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99975 45666679999999999999999954 577889999999999999988754332 111
Q ss_pred Ccccc-----------------------cCChhHhhhcCCccEEEccCCc------------------------------
Q 046908 150 NNFAG-----------------------KLPRNMGIVLQKLIYLDMPKNI------------------------------ 176 (551)
Q Consensus 150 ~~~~~-----------------------~l~~~~~~~l~~L~~L~L~~n~------------------------------ 176 (551)
+.+.. .++...+..++.++...+..+.
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 11111 0111111122222222211000
Q ss_pred c---cccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC-------------------ccc
Q 046908 177 F---EGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF-------------------PKY 234 (551)
Q Consensus 177 ~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~ 234 (551)
. ....+..+..+.+++.+++.++.+. .++. +.....++.|++.+|.+..... ...
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGG--GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hcccccchhhhhhhhcccccccccccccc-cccc--cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 0 0011122333445555555555544 2222 1223445555554444332221 223
Q ss_pred CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceecc-C
Q 046908 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRI-P 313 (551)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~ 313 (551)
..+++|+.+++++|.+.... ..+..+..+.+|+++++..+...........+++|+.+++..+.... .. +
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~---~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~------~~~~ 438 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKG---CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------MSEF 438 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEE---ECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES------TTSS
T ss_pred ccccccccchhhcccccccc---ccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc------cccc
Confidence 45677888888877765422 23344667778888888888777665554478888888888776542 22 2
Q ss_pred ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc-ccCCccccCCCCCcEEEcCCCCCC
Q 046908 314 YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS-GEIPREIGQLQNIRALNLSNNFLS 392 (551)
Q Consensus 314 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~ 392 (551)
..+..+++++.+++++|.+.+..|.. +..++.++.|++++|.+. +..|..|..+++|++|+|++|+++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~-----------~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGI-----------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTT-----------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cccccccccccccccccccccccccc-----------cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence 44677889999999999988665554 477889999999999754 457888999999999999999999
Q ss_pred CcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccC-CccCCcccCCCCCCCCcccc-
Q 046908 393 GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQF-ATFDESSYTGNHELCGSLIR- 469 (551)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~-~~~~~~~~~~n~~~c~~~~~- 469 (551)
+..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|. ...+ ..++.+++.+|||.|+|...
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 98899999999999999999999988888999999999999999999998887 3334 57888999999999999743
Q ss_pred -----------------CCCCCCCCCCCCCCC
Q 046908 470 -----------------KKCSSALKPPATPTE 484 (551)
Q Consensus 470 -----------------~~c~~~~~~~~~~~~ 484 (551)
..|..|....+.+..
T Consensus 588 ~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~ 619 (635)
T 4g8a_A 588 FLQWIKDQRQLLVEVERMECATPSDKQGMPVL 619 (635)
T ss_dssp HHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGG
T ss_pred HHHHHHhCCCccCCCCCceeCCchHHCCCEee
Confidence 457777766665533
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-43 Score=375.77 Aligned_cols=358 Identities=17% Similarity=0.235 Sum_probs=304.4
Q ss_pred cCcCccccchhccCCCCCCEeeCCCCccccc-----------------cChhhhc--CCCCCCEEEcccCcccccccCCC
Q 046908 40 NNQLSGKVPSTLTNLTSLEYLDRFSINFQGT-----------------ISINSLA--NHSKLEVLLISSGSNMLQVKTET 100 (551)
Q Consensus 40 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~ 100 (551)
+|.+++ +|..|+++++|++|++++|.+.+. +| ..+. ++++|++|++++|.+.+.+|. .
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~-~ 268 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPT-F 268 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCT-T
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChH-H
Confidence 578887 899999999999999999999874 55 3466 899999999999988777764 6
Q ss_pred ccCCCCccEEEccCCC-CC--CCchhhhCC------CCCCEEEccCCcccccCCCCCCCcccccCCh--hHhhhcCCccE
Q 046908 101 WHPTSQLKVLKLSDCH-LH--VIPSFLLQH------YHLIFLDLSNNKVVGNFPICSNNNFAGKLPR--NMGIVLQKLIY 169 (551)
Q Consensus 101 ~~~l~~L~~L~l~~n~-l~--~l~~~~~~~------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~--~~~~~l~~L~~ 169 (551)
+..+++|++|++++|+ ++ .+|..+..+ ++|++|++++|.++ .+|. .+. .+++|+.
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-------------~ip~~~~l~-~l~~L~~ 334 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-------------TFPVETSLQ-KMKKLGM 334 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-------------SCCCHHHHT-TCTTCCE
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-------------ccCchhhhc-cCCCCCE
Confidence 8999999999999998 76 588888776 89999999999988 6776 444 4899999
Q ss_pred EEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCC-CCEEECcCCcccccCCcccCCCC--CCCEEecc
Q 046908 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVA-LDLFDLSNNNFFGQIFPKYMNLT--HLHWLYLD 246 (551)
Q Consensus 170 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~ 246 (551)
|++++|.+.+.+| .+..+++|+.|++++|++. .+|..+ ..+++ |++|++++|.++ .+|..+..++ +|++|+++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANF-CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTS-EEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhh-hhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence 9999999998888 8999999999999999998 888775 55888 999999999998 6677777654 89999999
Q ss_pred cccccCcCCCchhhHhhc-------cCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccc
Q 046908 247 NNHFSGKMDDANILVQLS-------QLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINE 318 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 318 (551)
+|.+.+..+. .+. .+++|++|++++|.+++.+...+ .+++|++|++++|.++ .+|.....
T Consensus 411 ~N~l~~~~p~-----~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-------~i~~~~~~ 478 (636)
T 4eco_A 411 YNEIGSVDGK-----NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-------EIPKNSLK 478 (636)
T ss_dssp SSCTTTTTTC-----SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-------BCCSSSSE
T ss_pred CCcCCCcchh-----hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-------CcCHHHhc
Confidence 9999875443 355 77899999999999997766666 6899999999999987 56654332
Q ss_pred --------cCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEc----
Q 046908 319 --------LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNL---- 386 (551)
Q Consensus 319 --------l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---- 386 (551)
+++|++|++++|+++ .+|..+. ...+++|+.|+|++|.+++ +|..+..+++|++|++
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~---------~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFR---------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCC-BCCGGGS---------TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred cccccccccCCccEEECcCCcCC-ccChhhh---------hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 339999999999998 7776641 0378899999999999996 8999999999999999
Q ss_pred --CCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 387 --SNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 387 --~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
++|++.+.+|..+.++++|++|++++|++. .+|..+. ++|+.|++++|++.+...
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 568888899999999999999999999994 7787766 799999999999876543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-43 Score=378.96 Aligned_cols=392 Identities=16% Similarity=0.184 Sum_probs=312.2
Q ss_pred CCCEEEccc--CcCccccchhccCCCCCCEeeCCCCccccc-----------------cChhh-hcCCCCCCEEEcccCc
Q 046908 32 HLKVLDISN--NQLSGKVPSTLTNLTSLEYLDRFSINFQGT-----------------ISINS-LANHSKLEVLLISSGS 91 (551)
Q Consensus 32 ~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~-~~~l~~L~~L~l~~n~ 91 (551)
.++.+.+.. |.+++ +|..|+++++|++|+|++|.+.+. +|... |.++++|++|++++|.
T Consensus 424 ~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~ 502 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502 (876)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT
T ss_pred chhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC
Confidence 344444443 77886 888999999999999999999872 55332 3389999999999998
Q ss_pred ccccccCCCccCCCCccEEEccCCC-CC--CCchhhhCCC-------CCCEEEccCCcccccCCCCCCCcccccCCh--h
Q 046908 92 NMLQVKTETWHPTSQLKVLKLSDCH-LH--VIPSFLLQHY-------HLIFLDLSNNKVVGNFPICSNNNFAGKLPR--N 159 (551)
Q Consensus 92 ~~~~~~~~~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~-------~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~--~ 159 (551)
+.+.+| ..+..+++|++|++++|+ ++ .+|..+..++ +|++|++++|.++ .+|. .
T Consensus 503 l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-------------~ip~~~~ 568 (876)
T 4ecn_A 503 NMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-------------EFPASAS 568 (876)
T ss_dssp TCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-------------BCCCHHH
T ss_pred CCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-------------ccCChhh
Confidence 777777 468899999999999998 76 4887776665 9999999999988 6777 4
Q ss_pred HhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCC-CCEEECcCCcccccCCcccCCCC
Q 046908 160 MGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVA-LDLFDLSNNNFFGQIFPKYMNLT 238 (551)
Q Consensus 160 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~ 238 (551)
+. .+++|+.|++++|.+. .+| .|..+++|+.|++++|++. .+|..+ ..+++ |+.|++++|.+. .+|..+..++
T Consensus 569 l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 569 LQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS-CEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH-hhccccCCEEECcCCCCC-cCchhhhccc
Confidence 44 4899999999999998 677 8999999999999999998 888775 45777 999999999998 6677777665
Q ss_pred C--CCEEecccccccCcCCCchhhHhhc--cCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccC
Q 046908 239 H--LHWLYLDNNHFSGKMDDANILVQLS--QLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 239 ~--L~~L~L~~n~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
. |+.|++++|.+.+..+. ++..+. .+++|+.|++++|.++..+...+ .+++|++|+|++|.++ .+|
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~--l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-------~ip 713 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRN--ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-------SIP 713 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSS--CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-------CCC
T ss_pred cCCCCEEECcCCcCCCcccc--chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-------ccC
Confidence 4 99999999999875442 121222 44589999999999997666666 7899999999999987 566
Q ss_pred ccccc--------cCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEE
Q 046908 314 YQINE--------LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALN 385 (551)
Q Consensus 314 ~~~~~--------l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 385 (551)
..+.. +++|+.|++++|+++ .+|..+. ...+++|+.|+|++|.+++ +|..+..+++|+.|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~---------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR---------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS---------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhh---------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence 55433 349999999999998 7776641 0378899999999999996 788999999999999
Q ss_pred cCC------CCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCC-ccCCccCCcccC
Q 046908 386 LSN------NFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDK-EQFATFDESSYT 458 (551)
Q Consensus 386 L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~ 458 (551)
|++ |++.+.+|..+.++++|+.|++++|++ +.+|..+. ++|+.|++++|++....+.. ..........+.
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~ 859 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEE
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeec
Confidence 976 788889999999999999999999999 58888765 69999999999997655431 111123344555
Q ss_pred CCCCCC--Ccc
Q 046908 459 GNHELC--GSL 467 (551)
Q Consensus 459 ~n~~~c--~~~ 467 (551)
+|+..+ +|+
T Consensus 860 ~n~~~~I~gC~ 870 (876)
T 4ecn_A 860 YDKTQDIRGCD 870 (876)
T ss_dssp CCTTSEEESCG
T ss_pred CCCccccCCCC
Confidence 665554 665
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.5e-42 Score=362.15 Aligned_cols=430 Identities=20% Similarity=0.184 Sum_probs=260.7
Q ss_pred CCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEE
Q 046908 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (551)
+...+++|+++|++++ +|..+. ++|++|+|++|.+++..+++|.++++|++|++++|.+.+. +...|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEE
Confidence 3344566666666663 443332 5666666666666655555666666666666666665533 23445666666666
Q ss_pred EcccCcccccccCCCccCCCCccEEEccCCCCCCCc--hhhhCCCCCCEEEccCCcccc---------------------
Q 046908 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP--SFLLQHYHLIFLDLSNNKVVG--------------------- 142 (551)
Q Consensus 86 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~~L~~L~Ls~n~l~~--------------------- 142 (551)
++++|.+. .++.. .+++|++|++++|.+..++ ..+.++++|++|++++|.+++
T Consensus 106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 66666543 34432 4566666666666664433 456666666666666665542
Q ss_pred ----cCCC-------------CCCCcccccCChhHhhhcCCccEEEccCCc-----ccccCCcccccCCCCcEEECcCCc
Q 046908 143 ----NFPI-------------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNI-----FEGDIPYSIGEMKELYMQDLSRNN 200 (551)
Q Consensus 143 ----~~~~-------------~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~-----~~~~~~~~~~~l~~L~~L~L~~n~ 200 (551)
..|. +..+.+.+.++...+..+++|+.+++++|. +.+ ....+..+++|+.++++++.
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCc
Confidence 1111 001111111222122223333333333332 010 11123334444444444433
Q ss_pred ccee----CChhhhhCCCCCCEEECcCCcccccCCccc-----CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCE
Q 046908 201 FSGE----LPQPIVSGCVALDLFDLSNNNFFGQIFPKY-----MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271 (551)
Q Consensus 201 l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 271 (551)
+.+. ++... ...+|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ ..+ . .....+....+|+.
T Consensus 261 l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p-~-~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 261 TTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFS-K-EALYSVFAEMNIKM 335 (562)
T ss_dssp ECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSC-H-HHHHHHHHTCCCSE
T ss_pred CcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecC-h-hhhhhhhccCcceE
Confidence 3221 11111 23478888888888887777665 5566666666666655 111 1 11122223367889
Q ss_pred EECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhh
Q 046908 272 IDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFY 351 (551)
Q Consensus 272 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~ 351 (551)
|++++|.+...... ..+++|++|++++|.+++ .+|..+..+++|++|++++|++++ ++.. ...|
T Consensus 336 L~l~~n~~~~~~~~-~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~--------~~~~ 399 (562)
T 3a79_B 336 LSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTD------SVFQGCSTLKRLQTLILQRNGLKN-FFKV--------ALMT 399 (562)
T ss_dssp EEEESSCCCCCCCC-SSCCCCCEEECCSSCCCT------TTTTTCCSCSSCCEEECCSSCCCB-TTHH--------HHTT
T ss_pred EEccCCCcccccCc-cCCCCceEEECCCCcccc------chhhhhcccCCCCEEECCCCCcCC-cccc--------hhhh
Confidence 99998887654321 157889999999998873 567778888999999999998873 2211 0125
Q ss_pred hccccCceEecCCCcCcccCCc-cccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCC
Q 046908 352 SNLKYMAGLDLSSNELSGEIPR-EIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLS 430 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 430 (551)
.++++|+.|++++|.+++.+|. .+..+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|+
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~ 476 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence 7788899999999999874554 578888999999999998876665543 68999999999988 6676666888999
Q ss_pred eEECCCCccccCCCC-CccCCccCCcccCCCCCCCCccc
Q 046908 431 NFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 431 ~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+|++++|++++..+. ...+..+..+++.+||+.|+|+.
T Consensus 477 ~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp EEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred EEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999999866655 56677888888999999998864
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.7e-42 Score=361.62 Aligned_cols=410 Identities=18% Similarity=0.206 Sum_probs=308.0
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|+|++|++++..|++|.++++|++|+|++|.+++..+..|+++++|++|++++|.+.+......+.++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 47889999999999999998888999999999999999999998888889999999999999999885433346889999
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCCCCC-CchhhhC------------------------CCCCCEEEcc
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV-IPSFLLQ------------------------HYHLIFLDLS 136 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~------------------------~~~L~~L~Ls 136 (551)
|++|++++|.....++...|..+++|++|++++|.+.. .|..+.. +++|++|+++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 99999999987777877788899999999999998854 4555444 4566666666
Q ss_pred CCcccccC--CC-------------CCCCcccccCChhH---hhhcCCccEEEccCCcccccC------CcccccCCCCc
Q 046908 137 NNKVVGNF--PI-------------CSNNNFAGKLPRNM---GIVLQKLIYLDMPKNIFEGDI------PYSIGEMKELY 192 (551)
Q Consensus 137 ~n~l~~~~--~~-------------~~~~~~~~~l~~~~---~~~l~~L~~L~L~~n~~~~~~------~~~~~~l~~L~ 192 (551)
+|.+++.. |. +..+.+.+..+..+ ...+++|+.+++++|.+.+.. ...+..+.+++
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 66665321 00 00011111111111 012334444444444443321 11233445555
Q ss_pred EEECcCCcccee-----CChhhhhCCCCCCEEECcCCcccccCCccc-CCCCCCCEEecccccccCcCCCchhh---Hhh
Q 046908 193 MQDLSRNNFSGE-----LPQPIVSGCVALDLFDLSNNNFFGQIFPKY-MNLTHLHWLYLDNNHFSGKMDDANIL---VQL 263 (551)
Q Consensus 193 ~L~L~~n~l~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~---~~~ 263 (551)
.|++.++.+... ++ ..+....+|+.|++++|++.. +|..+ ..+++|++|++++|.+++ .++ ..+
T Consensus 285 ~L~l~~~~i~~~~~~~~l~-~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~ 357 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVE-----EYLKNSACK 357 (549)
T ss_dssp EEEEESCBCSCGGGSCCCC-HHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCH-----HHHHHHTCT
T ss_pred cccccccccchhhhcccch-hhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCcccc-----ccccchhhh
Confidence 555555544311 11 122335789999999999874 44444 679999999999999986 332 236
Q ss_pred ccCCCCCEEECCCCcccccCC--Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhh
Q 046908 264 SQLKSLELIDIFENSLSGSLV--SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 340 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~~~~~--~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 340 (551)
..+++|++|++++|.+++..+ ..+ .+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~ 429 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI 429 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-------CCCSCCCCCTTCCEEECTTSCCS-CCCTTS
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-------cCChhhcccccccEEECCCCCcc-cccchh
Confidence 789999999999999987653 334 7999999999999998 78888889999999999999987 445432
Q ss_pred hhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCC
Q 046908 341 CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP 420 (551)
Q Consensus 341 ~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 420 (551)
.++|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|
T Consensus 430 -------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 430 -------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp -------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred -------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 257999999999998643 57899999999999999 4555 4578999999999999998888
Q ss_pred CCCCCCCCCCeEECCCCccccCCCC
Q 046908 421 PQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 421 ~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
..+..+++|+.|++++|++.|.+|.
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhcCcccCEEEecCCCccCCCcc
Confidence 8899999999999999999998874
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.7e-41 Score=344.38 Aligned_cols=385 Identities=20% Similarity=0.241 Sum_probs=274.1
Q ss_pred CCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
-+.++.++++++ .+|. +. ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 356788888887 4554 33 7899999999999888888899999999999998888777777778888888888888
Q ss_pred cCcccccccCCCccCCCCccEEEccCCCCCC-Cchh--hhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcC
Q 046908 89 SGSNMLQVKTETWHPTSQLKVLKLSDCHLHV-IPSF--LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165 (551)
Q Consensus 89 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~ 165 (551)
+|.+.. ..+..|..+++|++|++++|.+.. ++.. +..+++|++|++++|.+++ ..|..++..++
T Consensus 88 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~l~ 154 (455)
T 3v47_A 88 YNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK------------IQPASFFLNMR 154 (455)
T ss_dssp TCTTCE-ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS------------CCCCGGGGGCT
T ss_pred CCccCc-cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc------------cCcccccCCCC
Confidence 777443 344467778888888888888754 3333 6777777788877777762 22444344567
Q ss_pred CccEEEccCCcccccCCcccccC--CCCcEEECcCCccceeCChhhh--------hCCCCCCEEECcCCcccccCCcccC
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEM--KELYMQDLSRNNFSGELPQPIV--------SGCVALDLFDLSNNNFFGQIFPKYM 235 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~ 235 (551)
+|++|++++|.+.+..+..+..+ .+|+.|++++|.+. .++...+ ..+++|++|++++|++.+..+..+.
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 77777777777776666666555 56677777777665 3332211 1234455555555544443333332
Q ss_pred C---CCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc---cccccceeeccccccccCccce
Q 046908 236 N---LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF---NLSSVKHLYLQKNAITGDNKFF 309 (551)
Q Consensus 236 ~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~ 309 (551)
. .++|+.|++++|...+.. +..+.+.......+ ..++|++|++++|.++.
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----- 289 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSS-------------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA----- 289 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCC-------------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-----
T ss_pred ccccccceeeEeeccccccccc-------------------cchhhhccCcccccccccccCceEEEecCccccc-----
Confidence 1 144444444444332210 00111111122222 34689999999998763
Q ss_pred eccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCC
Q 046908 310 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNN 389 (551)
Q Consensus 310 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 389 (551)
..|..+..+++|++|++++|++.+..|.. |.++++|+.|++++|.+++..+..+.++++|++|++++|
T Consensus 290 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 290 -LLKSVFSHFTDLEQLTLAQNEINKIDDNA-----------FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp -ECTTTTTTCTTCCEEECTTSCCCEECTTT-----------TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred -cchhhcccCCCCCEEECCCCcccccChhH-----------hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 56777888999999999999998666655 467788999999999998888889999999999999999
Q ss_pred CCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCc
Q 046908 390 FLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKE 447 (551)
Q Consensus 390 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~ 447 (551)
++++..|..|.++++|++|++++|++++..+..|..+++|++|++++|+++|.+|...
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 9998888899999999999999999997777788999999999999999999988643
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.9e-42 Score=357.31 Aligned_cols=408 Identities=20% Similarity=0.185 Sum_probs=320.3
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|+|++|++++..|++|.++++|++|+|++|.++ .+|.. .+++|++|++++|.+.+...+..+..+++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence 3678999999999999999888999999999999999999999 56655 89999999999999986433367999999
Q ss_pred CCEEEcccCcccccccCCCccCCCCc--cEEEccCCCC---CCCchhhhCCC-CCCEEEccCCcccccCCCCCC------
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQL--KVLKLSDCHL---HVIPSFLLQHY-HLIFLDLSNNKVVGNFPICSN------ 149 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L--~~L~l~~n~l---~~l~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~------ 149 (551)
|++|++++|.+.. ..+..+++| ++|++++|.+ ...|..+..+. +...+++++|.+.+..+....
T Consensus 117 L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 117 LKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp CCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred ceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 9999999988654 246667777 9999999998 34455554433 122344555554443332110
Q ss_pred -------C-------cccccCChhHhhhcCCccEEEccCCcccccCCcccc---cCCCCcEEECcCCccceeCChhhh--
Q 046908 150 -------N-------NFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG---EMKELYMQDLSRNNFSGELPQPIV-- 210 (551)
Q Consensus 150 -------~-------~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~-- 210 (551)
+ .+.+.+| . +..+++|+.|++++|.+.+..+..+. ..++|+.|++++|++.|.+|..++
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 270 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-K-LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-G-GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC
T ss_pred eeccccccccccccceeecchh-h-hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc
Confidence 0 1222333 2 33488999999999988754322221 256999999999999988998774
Q ss_pred --hCCCCCCEEECcCCcccccCC-cccCCC---CCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCC
Q 046908 211 --SGCVALDLFDLSNNNFFGQIF-PKYMNL---THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV 284 (551)
Q Consensus 211 --~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 284 (551)
..+++|+.+++++|.+ ..| ..+..+ .+|+.|++++|.+..... +..+++|++|++++|.+++..+
T Consensus 271 ~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-------PSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTT
T ss_pred ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-------hhhCCcccEEEeECCccChhhh
Confidence 6688999999999988 333 344333 679999999999865321 2678999999999999999777
Q ss_pred Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecC
Q 046908 285 SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLS 363 (551)
Q Consensus 285 ~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls 363 (551)
..+ .+++|++|++++|.++.. +.+|..+..+++|++|++++|++.+.+|... |..+++|+.|+++
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~----------~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKEL----SKIAEMTTQMKSLQQLDISQNSVSYDEKKGD----------CSWTKSLLSLNMS 407 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBH----HHHHHHHTTCTTCCEEECCSSCCBCCGGGCS----------CCCCTTCCEEECC
T ss_pred hhhccCCCCCEEEccCCccCcc----ccchHHHhhCCCCCEEECCCCcCCcccccch----------hccCccCCEEECc
Confidence 777 899999999999998721 1345678899999999999999996576542 5778999999999
Q ss_pred CCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCC-CCCCCCCCCeEECCCCccccC
Q 046908 364 SNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP-QLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 364 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~N~l~~~ 442 (551)
+|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++. +|. .+..+++|+++++++|+++|.
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 9999887776654 79999999999999 677767799999999999999995 555 489999999999999999987
Q ss_pred CCC
Q 046908 443 TPD 445 (551)
Q Consensus 443 ~~~ 445 (551)
++.
T Consensus 484 c~~ 486 (520)
T 2z7x_B 484 CPR 486 (520)
T ss_dssp HHH
T ss_pred CCc
Confidence 753
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-39 Score=331.72 Aligned_cols=383 Identities=20% Similarity=0.184 Sum_probs=287.2
Q ss_pred CCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEc
Q 046908 33 LKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKL 112 (551)
Q Consensus 33 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 112 (551)
-+.++.+++.++ .+|. + .++|++|++++|.+.+.. ...+..+++|++|++++|.....+++..|..+++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCC-hhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 356788888888 5565 3 278999999999988543 4568899999999999988777777778899999999999
Q ss_pred cCCCCCCC-chhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc-cccCCC
Q 046908 113 SDCHLHVI-PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS-IGEMKE 190 (551)
Q Consensus 113 ~~n~l~~l-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~ 190 (551)
++|.+..+ |..+.++++|++|++++|.+++.. .+...+..+++|++|++++|.+.+..|.. +.++++
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV-----------LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH-----------HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccc-----------cCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 99998665 667888889999999988876311 11122334677888888888777766655 677777
Q ss_pred CcEEECcCCccceeCChhhhhCC--CCCCEEECcCCcccccCCcc--------cCCCCCCCEEecccccccCcCCCchhh
Q 046908 191 LYMQDLSRNNFSGELPQPIVSGC--VALDLFDLSNNNFFGQIFPK--------YMNLTHLHWLYLDNNHFSGKMDDANIL 260 (551)
Q Consensus 191 L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~ 260 (551)
|++|++++|++.+..+..+ ..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+ ..+
T Consensus 156 L~~L~L~~n~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~ 229 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-----SMA 229 (455)
T ss_dssp CCEEECTTCCBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-----HHH
T ss_pred ccEEeCCCCcccccChhhh-hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-----cch
Confidence 7777777777764434332 222 56777777777766544332 2245667777777776654 333
Q ss_pred HhhccC---CCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcccc--ccCCCceEEecCCccccc
Q 046908 261 VQLSQL---KSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQIN--ELSNLHVLLLRGNSLQGH 335 (551)
Q Consensus 261 ~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~ 335 (551)
..+... ++|+.|++++|...+.......++. ..+..+. ..++|++|++++|.+.+.
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD-------------------PDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC-------------------CCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred hhhhccccccceeeEeeccccccccccchhhhcc-------------------CcccccccccccCceEEEecCcccccc
Confidence 333332 6666666666655443211111111 1111222 247899999999999977
Q ss_pred CChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcC
Q 046908 336 IPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRL 415 (551)
Q Consensus 336 ~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 415 (551)
.|..+ ..+++|+.|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++|++
T Consensus 291 ~~~~~-----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 291 LKSVF-----------SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp CTTTT-----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred chhhc-----------ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 77654 6788999999999999988899999999999999999999988889999999999999999999
Q ss_pred cccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 416 SGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 416 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
++..|..|..+++|++|++++|++++..+. ...+..++.+++.+|++.|+|+
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 998899999999999999999999987765 4677899999999999999997
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.6e-39 Score=345.05 Aligned_cols=414 Identities=21% Similarity=0.204 Sum_probs=315.7
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|||++|+|+++.+.+|.++++|++|+|++|++++..+++|.++++|++|++++|++.+ ++...|.++++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~ 149 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKT 149 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcc
Confidence 58899999999999999998889999999999999999999998888899999999999999999984 55567999999
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCC----CCEEEccCCcccccCCC----------
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYH----LIFLDLSNNKVVGNFPI---------- 146 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~----L~~L~Ls~n~l~~~~~~---------- 146 (551)
|++|++++|.+.....+..+..+++|++|++++|++..++ ..+..+.+ ...++++.|.+....+.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 9999999998765545557888999999999999997654 33332222 23455555544321111
Q ss_pred ----------------------------------------CCCCcccc-------------------cCChhHhhhcCCc
Q 046908 147 ----------------------------------------CSNNNFAG-------------------KLPRNMGIVLQKL 167 (551)
Q Consensus 147 ----------------------------------------~~~~~~~~-------------------~l~~~~~~~l~~L 167 (551)
.....+.+ .+. ..+....++
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~l 308 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII-DLFNCLTNV 308 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT-TTTGGGTTC
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh-hhhhhhccc
Confidence 00000000 000 111223344
Q ss_pred cEEEccCCcccccCCccccc---------------------CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcc
Q 046908 168 IYLDMPKNIFEGDIPYSIGE---------------------MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~---------------------l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 226 (551)
+.+++.++.+.... .+.. +..|+.+++..|... ..+. ...+++|+.+++++|.+
T Consensus 309 ~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~--~~~l~~L~~L~ls~n~l 383 (635)
T 4g8a_A 309 SSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFS--EVDLPSLEFLDLSRNGL 383 (635)
T ss_dssp SEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC-CBCC--CCBCTTCCEEECCSSCC
T ss_pred cccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCC-CCcc--cccccccccchhhcccc
Confidence 55555444443221 1222 344555555555443 2221 12478999999999988
Q ss_pred cc--cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCC-cc-cccccceeecccccc
Q 046908 227 FG--QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVS-SF-NLSSVKHLYLQKNAI 302 (551)
Q Consensus 227 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~n~l 302 (551)
.. ..+..+..+.+|+.+++..+..... +..+..+++|+.++++.+......+. .+ .+++++.++++.|.+
T Consensus 384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~------~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 384 SFKGCCSQSDFGTISLKYLDLSFNGVITM------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp BEEEECCHHHHSCSCCCEEECCSCSEEEE------CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhhhhhhhccccccccc------cccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 54 3455667889999999999987643 23378899999999999887765543 34 899999999999988
Q ss_pred ccCccceeccCccccccCCCceEEecCCcccc-cCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCC
Q 046908 303 TGDNKFFGRIPYQINELSNLHVLLLRGNSLQG-HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNI 381 (551)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 381 (551)
.. ..+..+..++.|+.|++++|.+.. ..|.. |..+++|++|+|++|++++..|..|.++++|
T Consensus 458 ~~------~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~-----------~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 458 RV------AFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp EE------CCTTTTTTCTTCCEEECTTCEEGGGEECSC-----------CTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cc------ccccccccchhhhhhhhhhcccccccCchh-----------hhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 63 456678889999999999998653 34443 5788999999999999999899999999999
Q ss_pred cEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC-CCCCeEECCCCccccCCCC
Q 046908 382 RALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL-NFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 382 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~~ 445 (551)
++|+|++|+|++..+..|.++++|+.|++++|++++..|..+..+ ++|++|++++|++.|.+..
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999999999889999999999999999999999999999988 6899999999999998864
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.8e-38 Score=330.22 Aligned_cols=388 Identities=18% Similarity=0.175 Sum_probs=271.5
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCcc
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLK 108 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 108 (551)
.+...+++++++|.++ .+|..+. ++|++|++++|.+.+ ++...|.++++|++|++++|.+. .++++.|..+++|+
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCC
Confidence 4455699999999999 5776654 899999999999984 55577999999999999999754 56666899999999
Q ss_pred EEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCCh-hHhhhcCCccEEEccCCcccccCCccccc
Q 046908 109 VLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPR-NMGIVLQKLIYLDMPKNIFEGDIPYSIGE 187 (551)
Q Consensus 109 ~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (551)
+|++++|.++.+|.. .+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+. .+..
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~-------------~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~ 165 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFD-------------VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP 165 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSCCS-------------BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCCcc-------------ccCchHhhcccCcccEEecCCCccccC---chhh
Confidence 999999999999977 8999999999999997 4431 2334589999999999998763 4455
Q ss_pred CCCC--cEEECcCCcc--ceeCChhhhhCCC-CCCEEECcCCcccccCCc-ccCCCCCCCEEecccc-------------
Q 046908 188 MKEL--YMQDLSRNNF--SGELPQPIVSGCV-ALDLFDLSNNNFFGQIFP-KYMNLTHLHWLYLDNN------------- 248 (551)
Q Consensus 188 l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n------------- 248 (551)
+++| +.|++++|++ .+..|..+. .+. ..-.+++++|.+.+..+. .+..+++|+.+++++|
T Consensus 166 l~~L~L~~L~L~~n~l~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~ 244 (562)
T 3a79_B 166 VAHLHLSCILLDLVSYHIKGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244 (562)
T ss_dssp GTTSCEEEEEEEESSCCCCSSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred hhhceeeEEEeecccccccccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH
Confidence 5566 9999999988 544443321 111 011234444443332211 2233344444444433
Q ss_pred ---------------cccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--------------------------
Q 046908 249 ---------------HFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-------------------------- 287 (551)
Q Consensus 249 ---------------~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------- 287 (551)
.+.+.... .++. ....++|++|++++|.+++..+..+
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~~~-~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~ 322 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKCSV-KLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHHHH-HHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHH
T ss_pred HhccCcceEEEecCCcCcHHHHH-HHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChh
Confidence 22211000 0111 1122366666666666664333221
Q ss_pred ------cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEe
Q 046908 288 ------NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361 (551)
Q Consensus 288 ------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~ 361 (551)
...+|++|++++|.+. ..+ ....+++|++|++++|.+++.+|..+ .++++|+.|+
T Consensus 323 ~~~~~~~~~~L~~L~l~~n~~~-------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~l~~L~~L~ 383 (562)
T 3a79_B 323 ALYSVFAEMNIKMLSISDTPFI-------HMV-CPPSPSSFTFLNFTQNVFTDSVFQGC-----------STLKRLQTLI 383 (562)
T ss_dssp HHHHHHHTCCCSEEEEESSCCC-------CCC-CCSSCCCCCEEECCSSCCCTTTTTTC-----------CSCSSCCEEE
T ss_pred hhhhhhccCcceEEEccCCCcc-------ccc-CccCCCCceEEECCCCccccchhhhh-----------cccCCCCEEE
Confidence 1134666666666553 111 11567899999999999987777654 6778899999
Q ss_pred cCCCcCccc--CCccccCCCCCcEEEcCCCCCCC-cccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCc
Q 046908 362 LSSNELSGE--IPREIGQLQNIRALNLSNNFLSG-AIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 362 Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~ 438 (551)
+++|.+++. .|..+.++++|++|++++|++++ ..+..+..+++|+.|++++|++++..|..+. ++|++|++++|+
T Consensus 384 L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~ 461 (562)
T 3a79_B 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461 (562)
T ss_dssp CCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC
T ss_pred CCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc
Confidence 999999853 34668899999999999999997 4445688899999999999999877776654 689999999999
Q ss_pred cccCCCCCccCCccCCcccCCCCCC
Q 046908 439 LSGPTPDKEQFATFDESSYTGNHEL 463 (551)
Q Consensus 439 l~~~~~~~~~~~~~~~~~~~~n~~~ 463 (551)
++...+....+..++.+++.+|...
T Consensus 462 l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 462 IMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred CcccChhhcCCCCCCEEECCCCCCC
Confidence 9876666667788888889888755
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.2e-37 Score=314.69 Aligned_cols=346 Identities=25% Similarity=0.278 Sum_probs=189.1
Q ss_pred CCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEE
Q 046908 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (551)
+++|+.|+++++++.. +|. +..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEE
Confidence 3566666666666653 332 5566666666666666664333 6666666666666666553322 4455555555
Q ss_pred EcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcC
Q 046908 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165 (551)
Q Consensus 86 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~ 165 (551)
++++|.+... +. +..+++|++|++++|.+..++. +..++
T Consensus 118 ~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~------------------------------------- 156 (466)
T 1o6v_A 118 TLFNNQITDI-DP--LKNLTNLNRLELSSNTISDISA-LSGLT------------------------------------- 156 (466)
T ss_dssp ECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCGG-GTTCT-------------------------------------
T ss_pred ECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCChh-hccCC-------------------------------------
Confidence 5554442221 11 4444455555555554444432 44444
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
+|+.|+++ +.+.+. ..+.++++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 157 ~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 228 (466)
T 1o6v_A 157 SLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228 (466)
T ss_dssp TCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred cccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEEC
Confidence 44444443 222211 12445555555555555554 2321 3345555555555555554333 444555666666
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceE
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L 325 (551)
++|.+++. ..+..+++|+.|++++|.+.+..+ ...+++|++|++++|.++ .++. +..+++|++|
T Consensus 229 ~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-------~~~~-~~~l~~L~~L 292 (466)
T 1o6v_A 229 NGNQLKDI-------GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-------NISP-LAGLTALTNL 292 (466)
T ss_dssp CSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-------CCGG-GTTCTTCSEE
T ss_pred CCCCcccc-------hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC-------cccc-ccCCCccCeE
Confidence 66555432 124555666666666666655443 115566666666666555 2222 5556666666
Q ss_pred EecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046908 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 326 ~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
++++|++.+..| +..+++|+.|++++|.+++..| +..+++|++|++++|++++. ..+..+++|
T Consensus 293 ~L~~n~l~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 293 ELNENQLEDISP-------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp ECCSSCCSCCGG-------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred EcCCCcccCchh-------------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 666666653221 2455666666666666664443 55666777777777766654 346666777
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccC
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 442 (551)
+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 777777777765555 56666677777777766653
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.6e-37 Score=314.94 Aligned_cols=326 Identities=21% Similarity=0.259 Sum_probs=253.4
Q ss_pred hcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCccccc
Q 046908 76 LANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGK 155 (551)
Q Consensus 76 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 155 (551)
+..+++|++|++++|.+... ++ +..+++|++|++++|.+..++. +.++++|++|++++|.++ .
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-------------~ 126 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDI-TP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-------------D 126 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-------------C
T ss_pred hhhhcCCCEEECCCCccCCc-hh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-------------C
Confidence 33444444444444432222 11 5566677777777777766665 677777777777777766 3
Q ss_pred CChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccC
Q 046908 156 LPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM 235 (551)
Q Consensus 156 l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 235 (551)
++. +..+++|++|++++|.+.+. ..+..+++|+.|+++ +.+. .++. +..+++|+.|++++|.+.+. ..+.
T Consensus 127 ~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 196 (466)
T 1o6v_A 127 IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVT-DLKP--LANLTTLERLDISSNKVSDI--SVLA 196 (466)
T ss_dssp CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-Cccc-Cchh--hccCCCCCEEECcCCcCCCC--hhhc
Confidence 333 33477888888888877753 248899999999997 4554 3333 67899999999999998764 4588
Q ss_pred CCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcc
Q 046908 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQ 315 (551)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (551)
.+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.. ....+++|++|++++|.++ .++.
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~-------~~~~- 260 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS-------NLAP- 260 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-------CCGG-
T ss_pred cCCCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccc-------cchh-
Confidence 99999999999999986432 678999999999999998753 2228999999999999987 3333
Q ss_pred ccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcc
Q 046908 316 INELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI 395 (551)
Q Consensus 316 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 395 (551)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-------------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred hhcCCCCCEEECCCCccCcccc-------------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 7889999999999999984322 3678899999999999986544 889999999999999999776
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 396 PESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 396 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
+ +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| ...+..+..+++.+|++..
T Consensus 326 ~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 326 P--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred h--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 6 78899999999999999865 468899999999999999998887 6677888888898888765
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-37 Score=315.98 Aligned_cols=368 Identities=21% Similarity=0.202 Sum_probs=174.2
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCC-------------CEeeCCCCcccccc
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSL-------------EYLDRFSINFQGTI 71 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~~ 71 (551)
+..+|++|++++|++ +.+|++++++++|++|++++|.+.+..|..++++++| ++|++++|.+.+.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 357889999999998 6888889999999999999999888888888887764 8888888877642
Q ss_pred ChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCc
Q 046908 72 SINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNN 151 (551)
Q Consensus 72 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 151 (551)
|. ..++|++|++++|.+.. ++. ..++|++|++++|++..++... ++|++|++++|.++
T Consensus 87 p~----~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~---------- 144 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLE---------- 144 (454)
T ss_dssp CS----CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCS----------
T ss_pred CC----CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCC----------
Confidence 21 13577777777776544 332 1256666666666665554321 45666666666655
Q ss_pred ccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC
Q 046908 152 FAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF 231 (551)
Q Consensus 152 ~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 231 (551)
.+|. +..+++|++|++++|.+.+ +|.. ..+|+.|++++|++. .+|. +..+++|++|++++|.+.+. |
T Consensus 145 ---~lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~--~~~l~~L~~L~l~~N~l~~l-~ 211 (454)
T 1jl5_A 145 ---KLPE--LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKL-P 211 (454)
T ss_dssp ---SCCC--CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSC-C
T ss_pred ---CCcc--cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCcc--ccCCCCCCEEECCCCcCCcC-C
Confidence 2331 2235555555555555553 2322 235555555555555 3442 34455555555555555432 1
Q ss_pred cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceec
Q 046908 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGR 311 (551)
Q Consensus 232 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 311 (551)
.. .++|++|++++|.+..++ .+..+++|++|++++|.+++.+. .+++|++|++++|.++ .
T Consensus 212 ~~---~~~L~~L~l~~n~l~~lp-------~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~-------~ 271 (454)
T 1jl5_A 212 DL---PLSLESIVAGNNILEELP-------ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLT-------D 271 (454)
T ss_dssp CC---CTTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCS-------C
T ss_pred CC---cCcccEEECcCCcCCccc-------ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCccc-------c
Confidence 11 135555555555554221 14455555555555555554322 1345555555555554 2
Q ss_pred cCccccccCCCceEEecCCcccc--cCChhhhhhhchhhH---hhhcc-ccCceEecCCCcCcccCCccccCCCCCcEEE
Q 046908 312 IPYQINELSNLHVLLLRGNSLQG--HIPNELCHVSRFLHR---FYSNL-KYMAGLDLSSNELSGEIPREIGQLQNIRALN 385 (551)
Q Consensus 312 ~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~~~---~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 385 (551)
+|.. .++|++|++++|++++ .+|..+..+. +... .+..+ ++|+.|++++|++++ +|.. +++|++|+
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~-l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLN-ASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLI 343 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEE-CCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cCcc---cCcCCEEECcCCccCcccCcCCcCCEEE-CcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence 3322 2445555555555543 1111000000 0000 00111 356666666666663 4432 35666666
Q ss_pred cCCCCCCCcccccccCCCCCCEEeCCCCcCcc--cCCCCCCCC-------------CCCCeEECCCCcccc
Q 046908 386 LSNNFLSGAIPESFSNLKMTESLDLSHNRLSG--HIPPQLTGL-------------NFLSNFNVSYNNLSG 441 (551)
Q Consensus 386 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l-------------~~L~~l~l~~N~l~~ 441 (551)
+++|++++ +|. .+++|+.|++++|++++ .+|..+..+ ++|++|++++|++++
T Consensus 344 L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 344 ASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 66666663 333 35666666666666665 455555555 556666666666665
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-37 Score=317.53 Aligned_cols=346 Identities=18% Similarity=0.155 Sum_probs=289.7
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHh
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMG 161 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~ 161 (551)
+.++.+++. ...+|... .++++.|++++|+++.++ ..+.++++|++|+|++|.++ .++...+
T Consensus 14 ~~v~c~~~~-l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-------------~~~~~~~ 76 (477)
T 2id5_A 14 RAVLCHRKR-FVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-------------AVEPGAF 76 (477)
T ss_dssp TEEECCSCC-CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-------------EECTTTT
T ss_pred CEEEeCCCC-cCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-------------EeChhhh
Confidence 455655544 33444422 258999999999997774 58899999999999999988 4444444
Q ss_pred hhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCC
Q 046908 162 IVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241 (551)
Q Consensus 162 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 241 (551)
..+++|++|++++|.+....+..|.++++|+.|++++|++. .++...+..+++|++|++++|.+.+..+..|.++++|+
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 45899999999999999877778999999999999999998 55555667899999999999999999899999999999
Q ss_pred EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccC
Q 046908 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELS 320 (551)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~ 320 (551)
+|++++|.++... +..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.. .+|.......
T Consensus 156 ~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~~ 224 (477)
T 2id5_A 156 QLTLEKCNLTSIP-----TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD------TMTPNCLYGL 224 (477)
T ss_dssp EEEEESCCCSSCC-----HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC------EECTTTTTTC
T ss_pred EEECCCCcCcccC-----hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc------ccCcccccCc
Confidence 9999999998643 3458899999999999999999888777 89999999999987542 5666666667
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
+|++|++++|.++ .+|.. .|..+++|+.|+|++|.+++..+..|.++++|++|++++|++++..+..|.
T Consensus 225 ~L~~L~l~~n~l~-~~~~~----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 225 NLTSLSITHCNLT-AVPYL----------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CCSEEEEESSCCC-SCCHH----------HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccEEECcCCccc-ccCHH----------HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 9999999999998 45532 257889999999999999988888899999999999999999988899999
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 401 NLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
++++|+.|++++|++++..+..|..+++|++|++++|++.|.++..+.+.......+.++...|..|.
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 99999999999999998777788999999999999999998876544444444566778888887654
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-37 Score=315.86 Aligned_cols=345 Identities=17% Similarity=0.198 Sum_probs=262.6
Q ss_pred CEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCC-chhhhCCCCCCEEEcc
Q 046908 58 EYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI-PSFLLQHYHLIFLDLS 136 (551)
Q Consensus 58 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~Ls 136 (551)
+.++.+++.+. .+|.. -.++++.|++++|.+. .+++..|..+++|++|++++|.+..+ |..+.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEG---IPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSC---CCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCC---CCCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 46666666665 34432 2357888999888744 45555788888999999999988666 5678888899999999
Q ss_pred CCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCC
Q 046908 137 NNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVAL 216 (551)
Q Consensus 137 ~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 216 (551)
+|.++ .+|...+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+. .++...+.++++|
T Consensus 89 ~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 154 (477)
T 2id5_A 89 SNRLK-------------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSL 154 (477)
T ss_dssp SSCCC-------------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTC
T ss_pred CCcCC-------------ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCC
Confidence 98887 666666666888999999999988888888888899999999999887 5555566778899
Q ss_pred CEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCc-cccccccee
Q 046908 217 DLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSS-FNLSSVKHL 295 (551)
Q Consensus 217 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L 295 (551)
+.|++++|.+++..+..|..+++|+.|++++|.+.+..+.. |..+++|+.|++++|...+..+.. +...+|++|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS-----FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-----SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh-----cccCcccceeeCCCCccccccCcccccCccccEE
Confidence 99999999888777777888899999999998888755444 788889999999888765544443 356689999
Q ss_pred eccccccccCccceeccC-ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcc
Q 046908 296 YLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPRE 374 (551)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 374 (551)
++++|.++ .+| ..+..+++|+.|++++|++++..+.. |.++++|+.|+|++|.+++..|..
T Consensus 230 ~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 230 SITHCNLT-------AVPYLAVRHLVYLRFLNLSYNPISTIEGSM-----------LHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp EEESSCCC-------SCCHHHHTTCTTCCEEECCSSCCCEECTTS-----------CTTCTTCCEEECCSSCCSEECTTT
T ss_pred ECcCCccc-------ccCHHHhcCccccCeeECCCCcCCccChhh-----------ccccccCCEEECCCCccceECHHH
Confidence 99998887 555 35778888999999999888544433 467788899999999988888888
Q ss_pred ccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 375 IGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 375 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
|.++++|++|++++|++++..+..|..+++|+.|++++|.+...-+.. .-......+++.++...|..|.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence 888899999999999998777778888889999999999887432211 1112233455566666655554
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-36 Score=310.67 Aligned_cols=355 Identities=18% Similarity=0.156 Sum_probs=256.1
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
++++++|++|++++|++++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+.+. + +..+++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cCCCCcC
Confidence 44577888888888888854 4 578888888888888888854 3 77888888888888887753 2 6777888
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhh
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI 162 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~ 162 (551)
++|++++|.+.. ++ +..+++|++|++++|+++.++ +..+++|++|++++|...+ .++ +.
T Consensus 109 ~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~------------~~~---~~ 167 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT------------KLD---VT 167 (457)
T ss_dssp CEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC------------CCC---CT
T ss_pred CEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccc------------ccc---cc
Confidence 888888776544 22 677778888888888886664 6677778888888775432 221 12
Q ss_pred hcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCE
Q 046908 163 VLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242 (551)
Q Consensus 163 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 242 (551)
.+++|+.|++++|.+++. | +..+++|+.|++++|+++ .++ +..+++|+.|++++|++++. | +..+++|+.
T Consensus 168 ~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~ 237 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTY 237 (457)
T ss_dssp TCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSE
T ss_pred cCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCC-eec---cccCCCCCEEECcCCccccc-C--ccccCCCCE
Confidence 366777888887777763 3 667777777777777776 333 45577777777777777763 3 667777777
Q ss_pred EecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCC
Q 046908 243 LYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322 (551)
Q Consensus 243 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L 322 (551)
|++++|.+++.+ ...+++|+.|+++.| +|+.|++++|.+. +.+| +..+++|
T Consensus 238 L~l~~N~l~~~~--------~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~------~~~~--~~~l~~L 288 (457)
T 3bz5_A 238 FDCSVNPLTELD--------VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQL------IYFQ--AEGCRKI 288 (457)
T ss_dssp EECCSSCCSCCC--------CTTCTTCCEEECTTC-------------CCSCCCCTTCTTC------CEEE--CTTCTTC
T ss_pred EEeeCCcCCCcC--------HHHCCCCCEEeccCC-------------CCCEEECCCCccC------Cccc--ccccccC
Confidence 777777776542 345667777776654 4566677777643 2444 4578899
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
+.|++++|+..+.+|.....+..+ .+.++++|+.|++++|++++. + +.++++|+.|++++|++++ +
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L---~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------C
T ss_pred CEEECCCCcccceeccCCCcceEe---chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------c
Confidence 999999998887777654444333 367778899999999999864 3 7888999999999999885 2
Q ss_pred CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
+.|+.|++++|.+.+. ..+..|..+++++|+++|.+|.
T Consensus 355 ~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 4566777888888765 2445688889999999998876
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.9e-35 Score=301.39 Aligned_cols=361 Identities=24% Similarity=0.296 Sum_probs=206.6
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCC-------------CEEEcccCcCccccchhccCCCCCCEeeCCCCccc
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHL-------------KVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQ 68 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 68 (551)
+++++++|++|++++|++.+..|..++++++| ++|++++|.+++ +|.. .++|++|++++|.+.
T Consensus 29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT 104 (454)
T ss_dssp -----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS
T ss_pred hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCC
Confidence 46778888888888888888888888887764 888888888874 3432 367888888888877
Q ss_pred cccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCC
Q 046908 69 GTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICS 148 (551)
Q Consensus 69 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 148 (551)
+ ++. .+++|++|++++|.+.. ++. ..++|++|++++|+++.+| .+..+++|++|++++|.+++
T Consensus 105 ~-lp~----~~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~------ 167 (454)
T 1jl5_A 105 E-LPE----LPQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK------ 167 (454)
T ss_dssp S-CCC----CCTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC------
T ss_pred c-ccc----ccCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc------
Confidence 5 442 24778888888776443 221 1157888888888887777 47778888888888887762
Q ss_pred CCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccc
Q 046908 149 NNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG 228 (551)
Q Consensus 149 ~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 228 (551)
+|.. .++|++|++++|.+.+ +| .+.++++|+.|++++|++. .+|.. .++|++|++++|.+.
T Consensus 168 -------lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 168 -------LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE- 228 (454)
T ss_dssp -------CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-
T ss_pred -------cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-
Confidence 2221 2366666666666665 33 4666666666666666665 34431 246666666666665
Q ss_pred cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccc
Q 046908 229 QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKF 308 (551)
Q Consensus 229 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 308 (551)
.+| .+..+++|++|++++|.+++.+. .+++|++|++++|.+++.+.. +++|++|++++|.+++..
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~l~~---------~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~-- 293 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKTLPD---------LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLS-- 293 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSCCS---------CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEES--
T ss_pred ccc-ccCCCCCCCEEECCCCcCCcccc---------cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCccc--
Confidence 233 36666666666666666654321 124555555555555543221 244555555555444100
Q ss_pred eeccCc-------------ccccc-CCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcc
Q 046908 309 FGRIPY-------------QINEL-SNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPRE 374 (551)
Q Consensus 309 ~~~~~~-------------~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 374 (551)
.+|. .+..+ ++|++|++++|++++ +|. .+++|+.|++++|.++ .+|.
T Consensus 294 --~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~--------------~~~~L~~L~L~~N~l~-~lp~- 354 (454)
T 1jl5_A 294 --ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA--------------LPPRLERLIASFNHLA-EVPE- 354 (454)
T ss_dssp --CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC--------------CCTTCCEEECCSSCCS-CCCC-
T ss_pred --CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc--------------cCCcCCEEECCCCccc-cccc-
Confidence 0010 01112 467777777777763 443 2478999999999998 5665
Q ss_pred ccCCCCCcEEEcCCCCCCC--cccccccCC-------------CCCCEEeCCCCcCcc--cCCCCCCCCCCCCeEECCCC
Q 046908 375 IGQLQNIRALNLSNNFLSG--AIPESFSNL-------------KMTESLDLSHNRLSG--HIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 375 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~l~l~~N 437 (551)
.+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|. +++.+.+.+|
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~ 426 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSE 426 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCc
Confidence 47899999999999998 677888777 899999999999986 4553 4677788888
Q ss_pred ccccCCC
Q 046908 438 NLSGPTP 444 (551)
Q Consensus 438 ~l~~~~~ 444 (551)
.+.+..+
T Consensus 427 ~~~~~~~ 433 (454)
T 1jl5_A 427 RVVDPYE 433 (454)
T ss_dssp -------
T ss_pred ccCCccc
Confidence 8876654
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-35 Score=295.86 Aligned_cols=334 Identities=19% Similarity=0.188 Sum_probs=182.5
Q ss_pred CCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCE
Q 046908 54 LTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIF 132 (551)
Q Consensus 54 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~ 132 (551)
++++++|+++++.+. .++...+..+++|++|++++|.+ ..+++..|..+++|++|++++|.+..++ ..+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 456666666665554 34444555566666666665543 2333344555566666666666654443 23455555555
Q ss_pred EEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhC
Q 046908 133 LDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSG 212 (551)
Q Consensus 133 L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 212 (551)
|++++|.++ .+|..++..+++|++|++++|.+.+..+..+..+++|+.|++++|+++ .++
T Consensus 122 L~L~~n~l~-------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~------ 181 (390)
T 3o6n_A 122 LVLERNDLS-------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD------ 181 (390)
T ss_dssp EECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC------
T ss_pred EECCCCccC-------------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc------
Confidence 555555554 444444333445555555555554444444444444444444444443 222
Q ss_pred CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccc
Q 046908 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSV 292 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 292 (551)
+..+++|+.|++++|.++. +...++|+.|++++|.+....... .++|
T Consensus 182 ---------------------~~~l~~L~~L~l~~n~l~~----------~~~~~~L~~L~l~~n~l~~~~~~~--~~~L 228 (390)
T 3o6n_A 182 ---------------------LSLIPSLFHANVSYNLLST----------LAIPIAVEELDASHNSINVVRGPV--NVEL 228 (390)
T ss_dssp ---------------------GGGCTTCSEEECCSSCCSE----------EECCSSCSEEECCSSCCCEEECCC--CSSC
T ss_pred ---------------------cccccccceeecccccccc----------cCCCCcceEEECCCCeeeeccccc--cccc
Confidence 2223333444444443332 122234445555555444432221 3456
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
++|++++|.+++ ...+..+++|++|++++|.+.+..|.. |..+++|+.|++++|.+++ ++
T Consensus 229 ~~L~l~~n~l~~--------~~~l~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~-~~ 288 (390)
T 3o6n_A 229 TILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIMYHP-----------FVKMQRLERLYISNNRLVA-LN 288 (390)
T ss_dssp CEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCEEESGG-----------GTTCSSCCEEECCSSCCCE-EE
T ss_pred cEEECCCCCCcc--------cHHHcCCCCccEEECCCCcCCCcChhH-----------ccccccCCEEECCCCcCcc-cC
Confidence 666666665541 134556666777777777666554544 3556667777777777763 44
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCcc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 452 (551)
..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++.. + +..++.|+.|++++|++.+.... ..+..+
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~ 363 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNV 363 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTC
T ss_pred cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHH
Confidence 45566777777777777777 4455566777777777777777643 2 55667777788888877664322 233444
Q ss_pred CCcccCCCCCCCCcc
Q 046908 453 DESSYTGNHELCGSL 467 (551)
Q Consensus 453 ~~~~~~~n~~~c~~~ 467 (551)
....+.+++..|.++
T Consensus 364 ~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 364 ARPAVDDADQHCKID 378 (390)
T ss_dssp CTTTBCCCCSCCCTT
T ss_pred HhhcccccCceeccc
Confidence 455556666666543
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.5e-35 Score=298.90 Aligned_cols=332 Identities=20% Similarity=0.184 Sum_probs=255.3
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+++++++|++|++++|++++. | +..+++|++|++++|.+++. + ++++++|++|++++|.+.+ ++ +..+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC---CTTCTT
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec---CCCCCc
Confidence 467889999999999999975 4 89999999999999999965 3 8999999999999999986 33 889999
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCC-CCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhH
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCH-LHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNM 160 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~ 160 (551)
|++|++++|.+.. + .+..+++|++|++++|. ++.+ .+..+++|++|++++|.++ .+|
T Consensus 129 L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-------------~l~--- 186 (457)
T 3bz5_A 129 LTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-------------ELD--- 186 (457)
T ss_dssp CCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-------------CCC---
T ss_pred CCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-------------eec---
Confidence 9999999998665 3 37889999999999995 4666 4778999999999999998 444
Q ss_pred hhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCC
Q 046908 161 GIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 161 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
...+++|+.|++++|.+++. .+..+++|+.|++++|+++ .+| +..+++|+.|++++|++++..+ ..+++|
T Consensus 187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip---~~~l~~L~~L~l~~N~l~~~~~---~~l~~L 256 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPLTELDV---STLSKL 256 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCCC---TTCTTC
T ss_pred cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-ccC---ccccCCCCEEEeeCCcCCCcCH---HHCCCC
Confidence 23478999999999999975 4888999999999999999 477 5679999999999999988653 456667
Q ss_pred CEEecccccccCcCCC-----chhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcc
Q 046908 241 HWLYLDNNHFSGKMDD-----ANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQ 315 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (551)
+.|+++.|.+....-. +.+| +..+++|+.|++++|...+..+. ..++|+.|+
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~------------------- 313 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELD------------------- 313 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCC-------------------
T ss_pred CEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcceEec-------------------
Confidence 7776665533221100 0111 23445555555555544333221 123333333
Q ss_pred ccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcc
Q 046908 316 INELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI 395 (551)
Q Consensus 316 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 395 (551)
+..+++|++|++++|++++ ++ +..+++|+.|++++|++++ ++.|..|++++|.+.+.
T Consensus 314 l~~~~~L~~L~L~~N~l~~-l~-------------l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~- 370 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTE-LD-------------VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE- 370 (457)
T ss_dssp CTTCTTCCEEECTTCCCSC-CC-------------CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-
T ss_pred hhhcccCCEEECCCCcccc-cc-------------cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-
Confidence 3445789999999999986 32 3678899999999999985 35677788999998865
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCCCCCC
Q 046908 396 PESFSNLKMTESLDLSHNRLSGHIPPQLTG 425 (551)
Q Consensus 396 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 425 (551)
..+..|+.+++++|+++|.+|..+..
T Consensus 371 ----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 371 ----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ----ceeeecCccccccCcEEEEcChhHhc
Confidence 24567888999999999999876543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.9e-35 Score=293.56 Aligned_cols=314 Identities=23% Similarity=0.221 Sum_probs=273.5
Q ss_pred CCCCccEEEccCCCCCCCchh-hhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccC
Q 046908 103 PTSQLKVLKLSDCHLHVIPSF-LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181 (551)
Q Consensus 103 ~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~ 181 (551)
.+.+++.|++++|.++.+|.. +..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-------------EIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-------------EECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-------------ccChhhccCCCCcCEEECCCCCCCcCC
Confidence 356899999999999888865 678999999999999987 555555556899999999999999888
Q ss_pred CcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhH
Q 046908 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILV 261 (551)
Q Consensus 182 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 261 (551)
|..|.++++|+.|++++|++. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------- 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD------- 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-------
T ss_pred HHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-------
Confidence 889999999999999999998 899888888999999999999999988889999999999999999998642
Q ss_pred hhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhh
Q 046908 262 QLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 341 (551)
Q Consensus 262 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 341 (551)
+..+++|+.|++++|.+++.. ..++|++|++++|.++ .+|... .++|+.|++++|.+++. ..
T Consensus 182 -~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~-------~~~~~~--~~~L~~L~l~~n~l~~~--~~-- 243 (390)
T 3o6n_A 182 -LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN-------VVRGPV--NVELTILKLQHNNLTDT--AW-- 243 (390)
T ss_dssp -GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCC-------EEECCC--CSSCCEEECCSSCCCCC--GG--
T ss_pred -cccccccceeecccccccccC----CCCcceEEECCCCeee-------eccccc--cccccEEECCCCCCccc--HH--
Confidence 677899999999999987653 3568999999999987 344332 47999999999999843 22
Q ss_pred hhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCC
Q 046908 342 HVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP 421 (551)
Q Consensus 342 ~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 421 (551)
+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..+..+++|++|++++|+++ .+|.
T Consensus 244 ---------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~ 312 (390)
T 3o6n_A 244 ---------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 312 (390)
T ss_dssp ---------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred ---------HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCc
Confidence 5788999999999999998889999999999999999999985 5666788999999999999998 5677
Q ss_pred CCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 422 QLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 422 ~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
.+..+++|++|++++|+++... ...+..++.+++.+|++.|+|..
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred cccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHH
Confidence 7888899999999999998664 45678899999999999998754
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-34 Score=302.99 Aligned_cols=333 Identities=19% Similarity=0.182 Sum_probs=209.9
Q ss_pred CCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCE
Q 046908 54 LTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIF 132 (551)
Q Consensus 54 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~ 132 (551)
+.+++.+++++|.+. .+|...+..+++|++|++++|.+. .+++..|..+++|++|++++|.+..++. .+..+++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 456666766666555 445455666666666666665533 3333455666666666666666644443 3455555566
Q ss_pred EEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhC
Q 046908 133 LDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSG 212 (551)
Q Consensus 133 L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 212 (551)
|++++|.++ .+|..++..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.
T Consensus 128 L~L~~n~l~-------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---------- 184 (597)
T 3oja_B 128 LVLERNDLS-------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---------- 184 (597)
T ss_dssp EECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS----------
T ss_pred EEeeCCCCC-------------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC----------
Confidence 665555555 444444333455555555555555444444444455555555444444
Q ss_pred CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccc
Q 046908 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSV 292 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 292 (551)
+.. +..+++|+.|++++|.+.+ +...++|+.|++++|.+....... .++|
T Consensus 185 ---------------~~~---~~~l~~L~~L~l~~n~l~~----------l~~~~~L~~L~ls~n~l~~~~~~~--~~~L 234 (597)
T 3oja_B 185 ---------------HVD---LSLIPSLFHANVSYNLLST----------LAIPIAVEELDASHNSINVVRGPV--NVEL 234 (597)
T ss_dssp ---------------BCC---GGGCTTCSEEECCSSCCSE----------EECCTTCSEEECCSSCCCEEECSC--CSCC
T ss_pred ---------------CcC---hhhhhhhhhhhcccCcccc----------ccCCchhheeeccCCccccccccc--CCCC
Confidence 321 2234455555555555443 233345666666666665544332 3567
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+ ..+++|+.|+|++|.+++ +|
T Consensus 235 ~~L~L~~n~l~~--------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~Ls~N~l~~-l~ 294 (597)
T 3oja_B 235 TILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIMYHPF-----------VKMQRLERLYISNNRLVA-LN 294 (597)
T ss_dssp CEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCEEESGGG-----------TTCSSCCEEECTTSCCCE-EE
T ss_pred CEEECCCCCCCC--------ChhhccCCCCCEEECCCCccCCCCHHHh-----------cCccCCCEEECCCCCCCC-CC
Confidence 777777777652 3556778888888888888887666653 667788888888888874 56
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCcc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 452 (551)
..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++. | +..++.|+.|++++|++.|.+.. ..+..+
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~ 369 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNV 369 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTC
T ss_pred cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHH
Confidence 66677889999999999998 5666778889999999999998854 2 66778899999999999876532 234455
Q ss_pred CCcccCCCCCCCCc
Q 046908 453 DESSYTGNHELCGS 466 (551)
Q Consensus 453 ~~~~~~~n~~~c~~ 466 (551)
....+.+++..|+.
T Consensus 370 ~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 370 ARPAVDDADQHCKI 383 (597)
T ss_dssp CTTTBCCCCCCCCT
T ss_pred hhhccccccccCCc
Confidence 55666777878865
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-33 Score=277.73 Aligned_cols=305 Identities=21% Similarity=0.268 Sum_probs=200.8
Q ss_pred CCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCC
Q 046908 78 NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLP 157 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~ 157 (551)
.+++|++|+++++.... ++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++ .++
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~--~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-------------~~~ 104 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ--GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-------------DIS 104 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-------------CCG
T ss_pred hcccccEEEEeCCcccc-ch--hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-------------Cch
Confidence 34444555554443221 11 24555566666666666655555 566666666666666655 232
Q ss_pred hhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCC
Q 046908 158 RNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNL 237 (551)
Q Consensus 158 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 237 (551)
. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+
T Consensus 105 ~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l 176 (347)
T 4fmz_A 105 A--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANL 176 (347)
T ss_dssp G--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred H--HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccC
Confidence 1 2235666666666666654322 56667777777777754433333 4557777777777777655433 6677
Q ss_pred CCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcccc
Q 046908 238 THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQIN 317 (551)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 317 (551)
++|++|++++|.+.+... +..+++|+.+++++|.+.+..+ ...+++|++|++++|.++ .++. +.
T Consensus 177 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~-------~~~~-~~ 240 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT-------DLSP-LA 240 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-------CCGG-GT
T ss_pred CCCCEEEccCCccccccc-------ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccC-------CCcc-hh
Confidence 777777777777664321 6677777777777777776554 226777888888888776 3333 66
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccc
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPE 397 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 397 (551)
.+++|++|++++|.+++ ++ . +..+++|+.|++++|.+++. ..+..+++|++|++++|++++..+.
T Consensus 241 ~l~~L~~L~l~~n~l~~-~~-~-----------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-IN-A-----------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp TCTTCCEEECCSSCCCC-CG-G-----------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCCCCCEEECCCCccCC-Ch-h-----------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 77888888888887763 21 1 46677888888888888753 4577888888888888888877778
Q ss_pred cccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccc
Q 046908 398 SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 398 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
.+.++++|+.|++++|++++..| +..+++|+++++++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888888888888886655 777888888888888875
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.3e-34 Score=302.12 Aligned_cols=313 Identities=23% Similarity=0.227 Sum_probs=272.9
Q ss_pred CCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 104 TSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 104 l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
+.+++.+++++|.+..+|. .+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.+..|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-------------EIDTYAFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-------------EECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-------------CCChHHhcCCCCCCEEECCCCcCCCCCH
Confidence 5688999999999988886 4677999999999999988 4555444568999999999999999888
Q ss_pred cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHh
Q 046908 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQ 262 (551)
Q Consensus 183 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 262 (551)
..|+++++|+.|++++|.+. .+|...|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------- 187 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-------- 187 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--------
T ss_pred HHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--------
Confidence 89999999999999999998 889888889999999999999999999999999999999999999998642
Q ss_pred hccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhh
Q 046908 263 LSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH 342 (551)
Q Consensus 263 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 342 (551)
+..+++|+.|++++|.+++.. ..++|++|++++|.++ .++..+ .++|+.|++++|.+++. ..
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~-------~~~~~~--~~~L~~L~L~~n~l~~~--~~--- 249 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN-------VVRGPV--NVELTILKLQHNNLTDT--AW--- 249 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCC-------EEECSC--CSCCCEEECCSSCCCCC--GG---
T ss_pred hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccc-------cccccc--CCCCCEEECCCCCCCCC--hh---
Confidence 667899999999999988753 3568999999999987 344333 36899999999999852 22
Q ss_pred hhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCC
Q 046908 343 VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ 422 (551)
Q Consensus 343 ~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 422 (551)
+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..
T Consensus 250 --------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 250 --------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp --------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred --------hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence 4788999999999999999999999999999999999999995 5667788999999999999999 67777
Q ss_pred CCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 423 LTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 423 ~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+..+++|++|++++|++++.. ...+..+..+++.+|++.|+|..
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred cccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHH
Confidence 888999999999999998764 45677889999999999998753
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9e-33 Score=273.23 Aligned_cols=305 Identities=23% Similarity=0.334 Sum_probs=177.4
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
.+++|++|++++|++.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+... ..+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~---~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI---SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GGGTTCTTCSE
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc---hHHcCCCcCCE
Confidence 45566666666666653 22 25666666666666666663322 66666666666666655532 13445555555
Q ss_pred EEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhc
Q 046908 85 LLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l 164 (551)
|+++ +|.+..++. +..+++|++|++++|.... .++. +..+
T Consensus 115 L~l~-------------------------~n~i~~~~~-~~~l~~L~~L~l~~n~~~~------------~~~~--~~~l 154 (347)
T 4fmz_A 115 LYLN-------------------------EDNISDISP-LANLTKMYSLNLGANHNLS------------DLSP--LSNM 154 (347)
T ss_dssp EECT-------------------------TSCCCCCGG-GTTCTTCCEEECTTCTTCC------------CCGG--GTTC
T ss_pred EECc-------------------------CCcccCchh-hccCCceeEEECCCCCCcc------------cccc--hhhC
Confidence 5554 444444433 4444455555555443221 1111 1124
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
++|++|++++|.+.+..+ +..+++|+.|++++|++. .++. +..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~ 227 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEE
Confidence 455555555555443322 455566666666666655 3333 3446666666666666654333 55666666666
Q ss_pred cccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCce
Q 046908 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHV 324 (551)
Q Consensus 245 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~ 324 (551)
+++|.++...+ +..+++|++|++++|.+++.. ....+++|++|++++|.++ .+ +.+..+++|++
T Consensus 228 l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~-------~~-~~~~~l~~L~~ 291 (347)
T 4fmz_A 228 IGNNKITDLSP-------LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQIS-------DI-SVLNNLSQLNS 291 (347)
T ss_dssp CCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-------CC-GGGGGCTTCSE
T ss_pred ccCCccCCCcc-------hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccC-------CC-hhhcCCCCCCE
Confidence 66666654211 566667777777777666541 1126677777777777765 23 34667788888
Q ss_pred EEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCC
Q 046908 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS 392 (551)
Q Consensus 325 L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 392 (551)
|++++|++++..|.. +..+++|+.|++++|++++..| +..+++|++|++++|.++
T Consensus 292 L~L~~n~l~~~~~~~-----------l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEV-----------IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHHH-----------HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChhH-----------hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888887554443 4667788888888888885555 778888999999888875
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.4e-33 Score=272.37 Aligned_cols=257 Identities=35% Similarity=0.543 Sum_probs=193.8
Q ss_pred CCcEEECcCCccce--eCChhhhhCCCCCCEEECcC-CcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC
Q 046908 190 ELYMQDLSRNNFSG--ELPQPIVSGCVALDLFDLSN-NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266 (551)
Q Consensus 190 ~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 266 (551)
+++.|++++|++.+ .+|..+ ..+++|++|++++ |.+.+..|..|..+++|++|++++|.+++ .+|..+..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----~~p~~~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-----AIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-----ECCGGGGGC
T ss_pred eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-----cCCHHHhCC
Confidence 45555555555554 455433 3355666666653 55555556666666666666666666654 233336666
Q ss_pred CCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccC-CCceEEecCCcccccCChhhhhhh
Q 046908 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELS-NLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
++|++|++++|.+++..+..+ .+++|++|++++|.++ +.+|..+..++ +|++|++++|++++.+|..+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~---- 194 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF---- 194 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE------EECCGGGGCCCTTCCEEECCSSEEEEECCGGG----
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc------CcCCHHHhhhhhcCcEEECcCCeeeccCChHH----
Confidence 777777777777666555555 6777777777777665 26677777777 88888888888888888765
Q ss_pred chhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCC
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 424 (551)
..+. |+.|++++|.+++..|..+..+++|++|++++|++++..+. +..+++|++|++++|++++.+|..+.
T Consensus 195 -------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 195 -------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp -------GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred -------hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 3444 88999999999888888999999999999999999866665 78899999999999999989999999
Q ss_pred CCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccccCCC
Q 046908 425 GLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKC 472 (551)
Q Consensus 425 ~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~c 472 (551)
.+++|++|++++|++++.+|....+..+..+++.+|++.|+.+.. .|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999998888889999999999999987654 35
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.7e-32 Score=266.71 Aligned_cols=291 Identities=21% Similarity=0.209 Sum_probs=233.9
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
+++.++++++.+..+|..+. +++++|++++|.++ .++...+..+++|++|++++|.+.+..|..|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT-------------EIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCC-------------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCC-------------EeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 78899999999988886543 67899999999888 5555455568899999999999998888899
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.++++|++|++++|+++ .+|..++ ++|++|++++|.+.+..+..|..+++|++|++++|.+.... ..+..+..
T Consensus 97 ~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~ 169 (330)
T 1xku_A 97 APLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---IENGAFQG 169 (330)
T ss_dssp TTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---BCTTGGGG
T ss_pred cCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC---cChhhccC
Confidence 99999999999999998 7887663 78999999999998888888899999999999999886421 22334888
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
+++|++|++++|.++..+... .++|++|++++|.++. ..|..+..+++|++|++++|.+++..+..
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------ 235 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK------VDAASLKGLNNLAKLGLSFNSISAVDNGS------ 235 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCE------ECTGGGTTCTTCCEEECCSSCCCEECTTT------
T ss_pred CCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCCCcCceeChhh------
Confidence 999999999999988765544 3789999999998762 44667888899999999999988655544
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccC------CCCCCEEeCCCCcCcc--
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSN------LKMTESLDLSHNRLSG-- 417 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~-- 417 (551)
+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+..
T Consensus 236 -----~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 236 -----LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp -----GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred -----ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 366788899999999888 77888888899999999999998777766653 3778889999998864
Q ss_pred cCCCCCCCCCCCCeEECCCCc
Q 046908 418 HIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 418 ~~p~~~~~l~~L~~l~l~~N~ 438 (551)
..|..|..++.++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 556778888888999988874
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.6e-32 Score=267.97 Aligned_cols=290 Identities=19% Similarity=0.201 Sum_probs=226.3
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
+++.++++++.+..+|..+. +++++|++++|.+. .++...+..+++|++|++++|.+.+..|..|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDIS-------------ELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-------------EECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCC-------------ccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 68889999999988887553 68899999999887 4554444558899999999999988888889
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.++++|+.|++++|++. .+|..++ ++|++|++++|.+....+..|..+++|++|++++|.++... ..+..+..
T Consensus 99 ~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~ 171 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG---FEPGAFDG 171 (332)
T ss_dssp TTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG---SCTTSSCS
T ss_pred hCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC---CCcccccC
Confidence 99999999999999987 7887664 78999999999998877778889999999999999886311 11223666
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
+ +|++|++++|.+++.+... .++|++|++++|.++. ..+..+..+++|++|++++|++.+..+..
T Consensus 172 l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~------ 236 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQA------IELEDLLRYSKLYRLGLGHNQIRMIENGS------ 236 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCC------CCTTSSTTCTTCSCCBCCSSCCCCCCTTG------
T ss_pred C-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCCCcCCcCChhH------
Confidence 6 8889999999888765543 3788888998888772 33466788888889999888888555444
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccC------CCCCCEEeCCCCcCc--c
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSN------LKMTESLDLSHNRLS--G 417 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~ 417 (551)
|..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+. .
T Consensus 237 -----~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 237 -----LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp -----GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred -----hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 366778888888888888 77777888888888888888888776666654 367888888888887 5
Q ss_pred cCCCCCCCCCCCCeEECCCCc
Q 046908 418 HIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 418 ~~p~~~~~l~~L~~l~l~~N~ 438 (551)
..|..|..++.|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 667778888888888888874
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.5e-35 Score=304.99 Aligned_cols=265 Identities=17% Similarity=0.074 Sum_probs=142.4
Q ss_pred CCCCCEEECcCCCCcccCCcc-CCCCCCCCEEEcccCcCccc----cchhccCCCCCCEeeCCCCccccccChhhhcCCC
Q 046908 6 LKNLFELDLSSNNFEGHIPQC-LNNLTHLKVLDISNNQLSGK----VPSTLTNLTSLEYLDRFSINFQGTISINSLANHS 80 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 80 (551)
.++|++|||++|+++...... +..+++|++|+|++|.+++. ++..+..+++|++|++++|.+.+......+..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357889999999987544333 77889999999999998843 4667788899999999998876543333333444
Q ss_pred ----CCCEEEcccCccccc---ccCCCccCCCCccEEEccCCCCCCC-ch----hhh-CCCCCCEEEccCCcccccCCCC
Q 046908 81 ----KLEVLLISSGSNMLQ---VKTETWHPTSQLKVLKLSDCHLHVI-PS----FLL-QHYHLIFLDLSNNKVVGNFPIC 147 (551)
Q Consensus 81 ----~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~l-~~----~~~-~~~~L~~L~Ls~n~l~~~~~~~ 147 (551)
+|++|++++|.+... ..+..+..+++|++|++++|.++.. +. .+. ..++|++|++++|.+++....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~- 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE- 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH-
Confidence 577777766654421 1122455566666666666665321 11 111 134566666666655421000
Q ss_pred CCCcccccCChhHhhhcCCccEEEccCCcccccCCcccc-----cCCCCcEEECcCCcccee----CChhhhhCCCCCCE
Q 046908 148 SNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG-----EMKELYMQDLSRNNFSGE----LPQPIVSGCVALDL 218 (551)
Q Consensus 148 ~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~ 218 (551)
.++.. +..+++|+.|++++|.+.+..+..+. ..++|+.|++++|++++. ++. .+..+++|++
T Consensus 161 -------~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~ 231 (461)
T 1z7x_W 161 -------PLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRE 231 (461)
T ss_dssp -------HHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCE
T ss_pred -------HHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccE
Confidence 11111 12245566666666655443332222 134555666665555421 122 2223555555
Q ss_pred EECcCCcccccC-----CcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccc
Q 046908 219 FDLSNNNFFGQI-----FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281 (551)
Q Consensus 219 L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (551)
|++++|.+.+.. +..+..+++|++|++++|.++..... .++..+..+++|++|++++|.+.+
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG-DLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-HHHHHHHHCTTCCEEECTTCCCHH
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH-HHHHHHhhCCCcceEECCCCCCch
Confidence 555555554321 11222355555555555555421000 134444555555555555555543
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.9e-34 Score=293.75 Aligned_cols=391 Identities=17% Similarity=0.106 Sum_probs=285.0
Q ss_pred CCCCCEEEcccCcCccccchh-ccCCCCCCEeeCCCCcccccc---ChhhhcCCCCCCEEEcccCcccccccCCCccCCC
Q 046908 30 LTHLKVLDISNNQLSGKVPST-LTNLTSLEYLDRFSINFQGTI---SINSLANHSKLEVLLISSGSNMLQVKTETWHPTS 105 (551)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 105 (551)
.++|++|+|++|.++...... +..+++|++|++++|.+.... -...+..+++|++|++++|.+........+..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367899999999998655444 788999999999999987431 1245788899999999999865543332233344
Q ss_pred ----CccEEEccCCCCC-----CCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCc
Q 046908 106 ----QLKVLKLSDCHLH-----VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNI 176 (551)
Q Consensus 106 ----~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~ 176 (551)
+|++|++++|.++ .++..+..+++|++|++++|.+.+..+. .+...+....++|++|++++|.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--------~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ--------LLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH--------HHHHHHTSTTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH--------HHHHHHhcCCCcceEEECCCCC
Confidence 7999999999996 4577889999999999999988631110 1122222234579999999999
Q ss_pred ccccC----CcccccCCCCcEEECcCCccceeCChhhh----hCCCCCCEEECcCCccccc----CCcccCCCCCCCEEe
Q 046908 177 FEGDI----PYSIGEMKELYMQDLSRNNFSGELPQPIV----SGCVALDLFDLSNNNFFGQ----IFPKYMNLTHLHWLY 244 (551)
Q Consensus 177 ~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 244 (551)
+.+.. +..+..+++|+.|++++|.+.+..+..+. ...++|++|++++|.++.. .+..+..+++|++|+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 98643 55677789999999999998744333332 2466999999999998864 356677889999999
Q ss_pred cccccccCcCCCchh-hHhhccCCCCCEEECCCCcccccC----CCcc-cccccceeeccccccccCccceeccCcccc-
Q 046908 245 LDNNHFSGKMDDANI-LVQLSQLKSLELIDIFENSLSGSL----VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQIN- 317 (551)
Q Consensus 245 L~~n~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~----~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~- 317 (551)
+++|.+...... .+ +..+..+++|++|++++|.+++.. +..+ .+++|++|++++|.+++.. ...+...+.
T Consensus 234 Ls~n~l~~~~~~-~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~ 310 (461)
T 1z7x_W 234 LGSNKLGDVGMA-ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCETLLE 310 (461)
T ss_dssp CCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTS
T ss_pred ccCCcCChHHHH-HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHHhcc
Confidence 999988752111 11 222346899999999999998742 3333 6899999999999886310 001111111
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccC-----CCCCcEEEcCCCCCC
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQ-----LQNIRALNLSNNFLS 392 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~ 392 (551)
..++|++|++++|.+++.....+ ...+..+++|++|++++|.+++..+..+.. .++|++|++++|+++
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l-------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHF-------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHH-------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CCccceeeEcCCCCCchHHHHHH-------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 23699999999999885432222 123577899999999999998665554432 679999999999998
Q ss_pred C----cccccccCCCCCCEEeCCCCcCccc--------CCCCCCCCCCCCeEECCCCcccc
Q 046908 393 G----AIPESFSNLKMTESLDLSHNRLSGH--------IPPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 393 ~----~~~~~~~~l~~L~~L~l~~n~l~~~--------~p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
+ .++..+..+++|++|++++|++++. +|. ....|+.|++.++.+..
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~---~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ---PGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS---TTCCCCEEECTTCCCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc---CCcchhheeecccccCH
Confidence 6 6778888899999999999999753 222 23467888887776653
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1e-30 Score=256.44 Aligned_cols=243 Identities=21% Similarity=0.293 Sum_probs=132.2
Q ss_pred CCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEE
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLK 111 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 111 (551)
+++.++++++.++ .+|..+. ++|++|++++|.+.+ ++...|..+++|++|++++|.+. .+.+..|..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEE
Confidence 4555555555555 3343332 355555555555542 22233444444444444444322 22233455666666666
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccc--cCCcccccCC
Q 046908 112 LSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG--DIPYSIGEMK 189 (551)
Q Consensus 112 l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~ 189 (551)
+++|.++.+|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.+.. ..+..+.+++
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEIT-------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCC-------------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CCCCcCCccChhhc--ccccEEECCCCccc-------------ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 66666666655433 56666666666665 4555555556666666666666642 4555666666
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
+|+.|++++|++. .+|... .++|++|++++|++.+..+..|..+++|++
T Consensus 172 ~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------------------------- 220 (330)
T 1xku_A 172 KLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAK--------------------------- 220 (330)
T ss_dssp TCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCE---------------------------
T ss_pred CcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCE---------------------------
Confidence 6777777666665 455433 245555555555555444444444444444
Q ss_pred CEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccc
Q 046908 270 ELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG 334 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 334 (551)
|++++|.+++..+..+ .+++|++|++++|.++ .+|.++..+++|++|++++|++++
T Consensus 221 --L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 221 --LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp --EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred --EECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCcCCc
Confidence 4444444444444333 4555555555555554 455566666777777777777663
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1e-30 Score=256.66 Aligned_cols=285 Identities=19% Similarity=0.226 Sum_probs=228.5
Q ss_pred CCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChh
Q 046908 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP 208 (551)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 208 (551)
+++.++++++.++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|++. .++..
T Consensus 34 ~l~~l~~~~~~l~-------------~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-------------AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEK 96 (332)
T ss_dssp ETTEEECCSSCCS-------------SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGG
T ss_pred cCCEEECCCCCcc-------------ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHh
Confidence 6899999999887 566554 358999999999999888889999999999999999998 55555
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccc--cCCCc
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG--SLVSS 286 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~ 286 (551)
.+..+++|++|++++|.+..... .+. ++|++|++++|.+....+.. +..+++|+.|++++|.++. ..+..
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPP-NLP--SSLVELRIHDNRIRKVPKGV-----FSGLRNMNCIEMGGNPLENSGFEPGA 168 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCS-SCC--TTCCEEECCSSCCCCCCSGG-----GSSCSSCCEEECCSCCCBGGGSCTTS
T ss_pred HhhCcCCCCEEECCCCcCCccCc-ccc--ccCCEEECCCCccCccCHhH-----hCCCccCCEEECCCCccccCCCCccc
Confidence 66789999999999999985443 333 79999999999998755443 8899999999999999964 55666
Q ss_pred c-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCC
Q 046908 287 F-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSN 365 (551)
Q Consensus 287 ~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n 365 (551)
+ .+ +|++|++++|.++ .+|..+. ++|++|++++|.+++..|.. |..+++|+.|++++|
T Consensus 169 ~~~l-~L~~L~l~~n~l~-------~l~~~~~--~~L~~L~l~~n~i~~~~~~~-----------l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLT-------GIPKDLP--ETLNELHLDHNKIQAIELED-----------LLRYSKLYRLGLGHN 227 (332)
T ss_dssp SCSC-CCSCCBCCSSBCS-------SCCSSSC--SSCSCCBCCSSCCCCCCTTS-----------STTCTTCSCCBCCSS
T ss_pred ccCC-ccCEEECcCCCCC-------ccCcccc--CCCCEEECCCCcCCccCHHH-----------hcCCCCCCEEECCCC
Confidence 6 44 9999999999987 5666554 78999999999998655554 467788999999999
Q ss_pred cCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC------CCCCeEECCCCcc
Q 046908 366 ELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL------NFLSNFNVSYNNL 439 (551)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l------~~L~~l~l~~N~l 439 (551)
.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|... +.|+.+++++|++
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 999877788999999999999999998 677778999999999999999997777777653 5688999999998
Q ss_pred c--cCCCC-CccCCccCCcccCCC
Q 046908 440 S--GPTPD-KEQFATFDESSYTGN 460 (551)
Q Consensus 440 ~--~~~~~-~~~~~~~~~~~~~~n 460 (551)
. +..|. ...+..+..+++.+|
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccccCcccccccchhhhhhcccc
Confidence 6 33332 334455556666554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=7.1e-32 Score=262.01 Aligned_cols=251 Identities=25% Similarity=0.376 Sum_probs=196.8
Q ss_pred CCccEEEccCCcccc--cCCcccccCCCCcEEECcC-CccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCC
Q 046908 165 QKLIYLDMPKNIFEG--DIPYSIGEMKELYMQDLSR-NNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 241 (551)
.+++.|++++|.+.+ .+|..+.++++|+.|++++ |++.+.+|..+ ..+++|++|++++|.+++..|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356777777777776 6677777777777777774 77766666554 4577777777777777777777777777788
Q ss_pred EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-ccc-ccceeeccccccccCccceeccCcccccc
Q 046908 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLS-SVKHLYLQKNAITGDNKFFGRIPYQINEL 319 (551)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~l 319 (551)
+|++++|.+++. +|..+..+++|++|++++|.+++..+..+ .++ +|++|++++|.++ +.+|..+..+
T Consensus 129 ~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~------~~~~~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGT-----LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT------GKIPPTFANL 197 (313)
T ss_dssp EEECCSSEEESC-----CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE------EECCGGGGGC
T ss_pred EEeCCCCccCCc-----CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee------ccCChHHhCC
Confidence 888887777763 33447777888888888888876666655 565 7888888888765 2667777777
Q ss_pred CCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccc
Q 046908 320 SNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399 (551)
Q Consensus 320 ~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 399 (551)
+ |++|++++|.+++..|.. |..+++|+.|++++|.+++..+. +..+++|++|++++|++++.+|..+
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVL-----------FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp C-CSEEECCSSEEEECCGGG-----------CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred c-ccEEECcCCcccCcCCHH-----------HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 6 899999999888766654 46778889999999998866554 7888999999999999998899999
Q ss_pred cCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCcccc
Q 046908 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 400 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 99999999999999999988886 888999999999998443
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=255.42 Aligned_cols=251 Identities=22% Similarity=0.248 Sum_probs=215.0
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
....++.++..+. .+|..+. ++++.|++++|++. .++...|..+++|++|+|++|.+....+.+|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567888888887 4555443 68999999999998 666667788999999999999999888889999999999999
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccc-cccCccceeccCc-cccccCCC
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNA-ITGDNKFFGRIPY-QINELSNL 322 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~~~~-~~~~l~~L 322 (551)
++|.++...+.. |..+++|++|++++|.++...+..+ .+++|++|++++|. ++ .++. .+..+++|
T Consensus 120 ~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~-------~i~~~~~~~l~~L 187 (440)
T 3zyj_A 120 FDNRLTTIPNGA-----FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-------YISEGAFEGLSNL 187 (440)
T ss_dssp CSSCCSSCCTTT-----SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------EECTTTTTTCSSC
T ss_pred CCCcCCeeCHhH-----hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc-------eeCcchhhccccc
Confidence 999998765544 8899999999999999998888777 89999999999854 33 4443 58889999
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
++|++++|.++ .+|. +..+++|+.|+|++|.+++..|..|.++++|++|++++|++++..+..|.++
T Consensus 188 ~~L~L~~n~l~-~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 188 RYLNLAMCNLR-EIPN------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CEEECTTSCCS-SCCC------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred CeecCCCCcCc-cccc------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 99999999988 5553 4678899999999999998888999999999999999999998888889999
Q ss_pred CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
++|+.|+|++|++++..+..|..+++|+.|++++|++.|.+.-
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 9999999999999987778889999999999999999887754
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=5.6e-29 Score=254.78 Aligned_cols=251 Identities=20% Similarity=0.214 Sum_probs=215.2
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
....++.++..+.. +|..+. ++++.|++++|++. .++...|..+++|++|++++|.+.+..+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 45678888888874 555443 68999999999998 566666778999999999999999988899999999999999
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeecccc-ccccCccceeccCc-cccccCCC
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKN-AITGDNKFFGRIPY-QINELSNL 322 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~~l~~L 322 (551)
++|.++...+.. |..+++|++|++++|.++...+..+ .+++|++|++++| .++ .++. .+..+++|
T Consensus 131 ~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~-------~i~~~~~~~l~~L 198 (452)
T 3zyi_A 131 FDNWLTVIPSGA-----FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-------YISEGAFEGLFNL 198 (452)
T ss_dssp CSSCCSBCCTTT-----SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------EECTTTTTTCTTC
T ss_pred CCCcCCccChhh-----hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-------ccChhhccCCCCC
Confidence 999998766554 8889999999999999998888777 8999999999985 343 4444 57889999
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
++|++++|.++ .+|. +..+++|+.|+|++|.+++..|..|.++++|+.|++++|++++..+..|.++
T Consensus 199 ~~L~L~~n~l~-~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 199 KYLNLGMCNIK-DMPN------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CEEECTTSCCS-SCCC------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CEEECCCCccc-cccc------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 99999999998 3443 4678899999999999998889999999999999999999998888899999
Q ss_pred CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
++|+.|++++|++++..+..|..+++|+.|++++|++.|.+..
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999999977778889999999999999999888764
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.2e-29 Score=246.04 Aligned_cols=232 Identities=23% Similarity=0.279 Sum_probs=147.7
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccccc--CCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ--IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+++.|++++|++. .+|...+..+++|++|++++|.+... .+..+..+++|++|++++|.+.. ++..+..++
T Consensus 29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~------l~~~~~~l~ 101 (306)
T 2z66_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------MSSNFLGLE 101 (306)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE------EEEEEETCT
T ss_pred CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc------ChhhcCCCC
Confidence 3444444444443 34444334444444444444444321 12233334444444444444432 222244455
Q ss_pred CCCEEECCCCcccccCC-Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccc-cCChhhhhhh
Q 046908 268 SLELIDIFENSLSGSLV-SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG-HIPNELCHVS 344 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~ 344 (551)
+|++|++++|.+++..+ ..+ .+++|++|++++|.++. ..+..+..+++|++|++++|.+.+ ..|..
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----- 170 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------AFNGIFNGLSSLEVLKMAGNSFQENFLPDI----- 170 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE------CSTTTTTTCTTCCEEECTTCEEGGGEECSC-----
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc------cchhhcccCcCCCEEECCCCccccccchhH-----
Confidence 55555555555554443 223 55566666666665541 334456666777777777777664 34443
Q ss_pred chhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCC
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 424 (551)
+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+.
T Consensus 171 ------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 171 ------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp ------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 35667788888888888877788888899999999999999987777889999999999999999988888888
Q ss_pred CCC-CCCeEECCCCccccCCCC
Q 046908 425 GLN-FLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 425 ~l~-~L~~l~l~~N~l~~~~~~ 445 (551)
.++ +|++|++++|++++.++.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGG
T ss_pred hhhccCCEEEccCCCeecccCh
Confidence 884 899999999999887653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=251.10 Aligned_cols=282 Identities=20% Similarity=0.178 Sum_probs=178.2
Q ss_pred CCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 103 PTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 103 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
.++.....+.+++.++.+|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.+.+..+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRIT-------------YISNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCc-------------ccCHHHhccCCCCCEEECCCCccCccCH
Confidence 34455567778888888876554 36777777777776 4444444446777777777777776666
Q ss_pred cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC-cccCCCCCCCEEeccccc-ccCcCCCchhh
Q 046908 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNH-FSGKMDDANIL 260 (551)
Q Consensus 183 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 260 (551)
..|.++++|++|++++|+++ .++...+..+++|++|++++|++..... ..|..+++|++|++++|. +....+.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---- 168 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---- 168 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT----
T ss_pred hhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH----
Confidence 66777777777777777776 5666666667777777777776665443 356666666666666663 3332221
Q ss_pred HhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhh
Q 046908 261 VQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 340 (551)
Q Consensus 261 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 340 (551)
.+..+++|++|++++|.+++.. |..+..+++|++|++++|.+. .+|..
T Consensus 169 -~~~~l~~L~~L~l~~n~l~~~~-----------------------------~~~l~~l~~L~~L~l~~n~l~-~~~~~- 216 (353)
T 2z80_A 169 -DFAGLTFLEELEIDASDLQSYE-----------------------------PKSLKSIQNVSHLILHMKQHI-LLLEI- 216 (353)
T ss_dssp -TTTTCCEEEEEEEEETTCCEEC-----------------------------TTTTTTCSEEEEEEEECSCST-THHHH-
T ss_pred -HccCCCCCCEEECCCCCcCccC-----------------------------HHHHhccccCCeecCCCCccc-cchhh-
Confidence 2444555555555555444443 444445555555555555543 22221
Q ss_pred hhhhchhhHhhhccccCceEecCCCcCcccCCccc---cCCCCCcEEEcCCCCCCC----cccccccCCCCCCEEeCCCC
Q 046908 341 CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI---GQLQNIRALNLSNNFLSG----AIPESFSNLKMTESLDLSHN 413 (551)
Q Consensus 341 ~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n 413 (551)
.+..+++|+.|++++|.+++..+..+ ...+.++.++++++.+++ .+|..+.++++|+.|++++|
T Consensus 217 ---------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 217 ---------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp ---------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred ---------hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 12344555555555555554333222 234667778888877765 35677888999999999999
Q ss_pred cCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
+++...+..|..+++|++|++++|++.|.+|.
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 99844334468899999999999999987764
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=249.90 Aligned_cols=280 Identities=18% Similarity=0.178 Sum_probs=209.1
Q ss_pred CCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccC
Q 046908 78 NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKL 156 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l 156 (551)
.|+.....+.+++. ...+|... .++|++|++++|+++.++. .+.++++|++|++++|.++ .+
T Consensus 29 ~C~~~~~c~~~~~~-l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------------~~ 91 (353)
T 2z80_A 29 SCDRNGICKGSSGS-LNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-------------TI 91 (353)
T ss_dssp EECTTSEEECCSTT-CSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-------------EE
T ss_pred CCCCCeEeeCCCCC-cccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-------------cc
Confidence 45566667777665 34455432 2489999999999988876 7899999999999999998 45
Q ss_pred ChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCCh-hhhhCCCCCCEEECcCC-cccccCCccc
Q 046908 157 PRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQ-PIVSGCVALDLFDLSNN-NFFGQIFPKY 234 (551)
Q Consensus 157 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 234 (551)
+...+..+++|++|++++|.+.+..+..+.++++|++|++++|++. .+|. ..+..+++|++|++++| .+....+..|
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 4444455899999999999999766666999999999999999998 7877 67788999999999999 5777778899
Q ss_pred CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccC
Q 046908 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
.++++|++|++++|.+++..+. .+..+++|++|++++|.+.......+ .+++|++|++++|.++.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--------- 236 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPK-----SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT--------- 236 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTT-----TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT---------
T ss_pred cCCCCCCEEECCCCCcCccCHH-----HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc---------
Confidence 9999999999999999875443 48888888888888888765544433 46677777777776652
Q ss_pred ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcc----cCCccccCCCCCcEEEcCCC
Q 046908 314 YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG----EIPREIGQLQNIRALNLSNN 389 (551)
Q Consensus 314 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n 389 (551)
..+..+.. ......++.++++++.+++ .+|..+..+++|++|++++|
T Consensus 237 ---------------------~~~~~l~~--------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 237 ---------------------FHFSELST--------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp ---------------------CCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred ---------------------cccccccc--------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 11111100 0122334444555444443 35667788888888888888
Q ss_pred CCCCcccccccCCCCCCEEeCCCCcCccc
Q 046908 390 FLSGAIPESFSNLKMTESLDLSHNRLSGH 418 (551)
Q Consensus 390 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 418 (551)
+++...+..|.++++|+.|++++|++.+.
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 88855445568888899999999988754
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.1e-31 Score=281.74 Aligned_cols=406 Identities=17% Similarity=0.072 Sum_probs=289.2
Q ss_pred CCCCCCCEEECcCCCCc---ccCCccCC------------CCCCCCEEEcccCcCccccchhccCC--CCCCEeeCCCCc
Q 046908 4 CNLKNLFELDLSSNNFE---GHIPQCLN------------NLTHLKVLDISNNQLSGKVPSTLTNL--TSLEYLDRFSIN 66 (551)
Q Consensus 4 ~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~ 66 (551)
.++++|++|+|+++... +..|..+. .+++|++|+|++|.+++..+..+... .+|++|+++++.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 46889999999886421 23333333 78999999999999987777766663 459999998886
Q ss_pred cccccC-hhhhcCCCCCCEEEcccCcccccc---cCCCccCCCCccEEEccCCCCC-----CCchhhhCCCCCCEEEccC
Q 046908 67 FQGTIS-INSLANHSKLEVLLISSGSNMLQV---KTETWHPTSQLKVLKLSDCHLH-----VIPSFLLQHYHLIFLDLSN 137 (551)
Q Consensus 67 ~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~Ls~ 137 (551)
...... ......+++|++|++++|...... .......+++|++|++++|.++ .++..+..+++|++|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 221111 122357899999999998753321 1113456789999999999996 3445667899999999999
Q ss_pred CcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCccc---ccCCcccccCCCCcEEECcCCccceeCChhhhhCCC
Q 046908 138 NKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE---GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCV 214 (551)
Q Consensus 138 n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 214 (551)
|.+. .++.. +..+++|+.|+++..... ...+..+..+++|+.|+++++... .+|. .+..++
T Consensus 230 ~~~~-------------~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~ 293 (592)
T 3ogk_B 230 FEIL-------------ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAA 293 (592)
T ss_dssp CBGG-------------GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGG
T ss_pred ccHH-------------HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcC
Confidence 9887 56644 445899999999864332 234456778899999999886443 4554 445688
Q ss_pred CCCEEECcCCcccccCC-cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCC-----------Cccccc
Q 046908 215 ALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFE-----------NSLSGS 282 (551)
Q Consensus 215 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~ 282 (551)
+|++|++++|.+++... ..+..+++|++|+++ +.+... .++.....+++|++|++++ +.+++.
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~----~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR----GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH----HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH----HHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 99999999999765433 346789999999999 444321 4555567899999999993 566544
Q ss_pred CCCcc--cccccceeeccccccccCccceeccCccccc-cCCCceEEec----CCcccccCChhhhhhhchhhHhhhccc
Q 046908 283 LVSSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQINE-LSNLHVLLLR----GNSLQGHIPNELCHVSRFLHRFYSNLK 355 (551)
Q Consensus 283 ~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~p~~~~~~~~l~~~~~~~l~ 355 (551)
....+ .+++|++|++..|.+++ ..+..+.. +++|+.|+++ .|.+++. |..- .+ ...+.+++
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~------~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~~-~~----~~~~~~~~ 436 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITN------ESLESIGTYLKNLCDFRLVLLDREERITDL-PLDN-GV----RSLLIGCK 436 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCH------HHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCHH-HH----HHHHHHCT
T ss_pred HHHHHHhhCccCeEEEeecCCccH------HHHHHHHhhCCCCcEEEEeecCCCccccCc-hHHH-HH----HHHHHhCC
Confidence 33222 68999999998887763 33444544 8899999997 5566632 2110 01 11256789
Q ss_pred cCceEecCCCc--CcccCCccc-cCCCCCcEEEcCCCCCCCc-ccccccCCCCCCEEeCCCCcCccc-CCCCCCCCCCCC
Q 046908 356 YMAGLDLSSNE--LSGEIPREI-GQLQNIRALNLSNNFLSGA-IPESFSNLKMTESLDLSHNRLSGH-IPPQLTGLNFLS 430 (551)
Q Consensus 356 ~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~ 430 (551)
+|+.|++++|. +++..+..+ ..+++|++|++++|++++. .+..+.++++|+.|++++|.+++. ++..+..+++|+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 99999998654 665544444 3488999999999999863 455568899999999999998654 333445688999
Q ss_pred eEECCCCccccC
Q 046908 431 NFNVSYNNLSGP 442 (551)
Q Consensus 431 ~l~l~~N~l~~~ 442 (551)
+|++++|+++..
T Consensus 517 ~L~ls~n~it~~ 528 (592)
T 3ogk_B 517 YLWVQGYRASMT 528 (592)
T ss_dssp EEEEESCBCCTT
T ss_pred eeECcCCcCCHH
Confidence 999999998654
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=246.65 Aligned_cols=228 Identities=24% Similarity=0.285 Sum_probs=187.7
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
++++.|++++|.+.+..+..|.++++|+.|++++|++. .++...|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 46777777777777777777888888888888888887 66666677788888888888888877777788888888888
Q ss_pred cccccccCcCCCchhhHhhccCCCCCEEECCCC-cccccCCCcc-cccccceeeccccccccCccceeccCccccccCCC
Q 046908 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFEN-SLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322 (551)
Q Consensus 245 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L 322 (551)
+++|.++...+.. |..+++|++|++++| .+....+..+ ++++|++|++++|.++ .+| .+..+++|
T Consensus 143 L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-------~~~-~~~~l~~L 209 (440)
T 3zyj_A 143 LRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-------EIP-NLTPLIKL 209 (440)
T ss_dssp CCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-------SCC-CCTTCSSC
T ss_pred CCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-------ccc-ccCCCccc
Confidence 8888887655443 778888888888884 4555555566 7888999999999887 455 46788999
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
++|++++|++++..|.. |.++++|+.|++++|.+++..+..|.++++|++|+|++|++++..+..|..+
T Consensus 210 ~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGS-----------FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CEEECTTSCCCEECTTT-----------TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred CEEECCCCccCccChhh-----------hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 99999999998666655 4778899999999999998889999999999999999999998888889999
Q ss_pred CCCCEEeCCCCcCcc
Q 046908 403 KMTESLDLSHNRLSG 417 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~ 417 (551)
++|+.|++++|.+..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 999999999999863
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.3e-28 Score=246.99 Aligned_cols=248 Identities=21% Similarity=0.255 Sum_probs=213.6
Q ss_pred CCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChh
Q 046908 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP 208 (551)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 208 (551)
..+.++.++..++ .+|..+ .++++.|++++|.+.+..+..|.++++|+.|++++|++. .++..
T Consensus 55 ~~~~v~c~~~~l~-------------~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~ 117 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-------------EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVG 117 (452)
T ss_dssp SSCEEECCSSCCS-------------SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTT
T ss_pred CCcEEEECCCCcC-------------ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChh
Confidence 4678888888887 666544 358999999999999988999999999999999999998 66666
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCC-cccccCCCcc
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN-SLSGSLVSSF 287 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 287 (551)
.|.++++|++|+|++|+++...+..|..+++|++|++++|.++...... |..+++|+.|++++| .+.......+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccChhhc
Confidence 7788999999999999999888888999999999999999998765544 889999999999984 5666666666
Q ss_pred -cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCc
Q 046908 288 -NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNE 366 (551)
Q Consensus 288 -~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~ 366 (551)
++++|++|++++|.++ .+| .+..+++|++|++++|++++..|.. |.++++|+.|++++|.
T Consensus 193 ~~l~~L~~L~L~~n~l~-------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIK-------DMP-NLTPLVGLEELEMSGNHFPEIRPGS-----------FHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp TTCTTCCEEECTTSCCS-------SCC-CCTTCTTCCEEECTTSCCSEECGGG-----------GTTCTTCCEEECTTSC
T ss_pred cCCCCCCEEECCCCccc-------ccc-cccccccccEEECcCCcCcccCccc-----------ccCccCCCEEEeCCCc
Confidence 8999999999999987 444 4778899999999999998666654 4778899999999999
Q ss_pred CcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcc
Q 046908 367 LSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG 417 (551)
Q Consensus 367 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 417 (551)
+++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 998888899999999999999999998888889999999999999998864
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.3e-28 Score=237.02 Aligned_cols=252 Identities=20% Similarity=0.209 Sum_probs=217.0
Q ss_pred cEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCE
Q 046908 192 YMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271 (551)
Q Consensus 192 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 271 (551)
+.++.+++.++ .+|..+ .++|++|++++|.+....+..|..+++|++|++++|.++... ..+..+..+++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG---CCSQSDFGTTSLKY 82 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE---EEEHHHHSCSCCCE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc---CcccccccccccCE
Confidence 56788888887 888755 468999999999999777777899999999999999987432 22455778999999
Q ss_pred EECCCCcccccCCCcccccccceeeccccccccCccceeccC--ccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 272 IDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP--YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 272 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
|++++|.+.+.......+++|++|++++|.++ .++ ..+..+++|++|++++|.+.+..|..
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------- 145 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------- 145 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEE-------SSTTTTTTTTCTTCCEEECTTSCCEECSTTT----------
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCccc-------ccccchhhhhccCCCEEECCCCcCCccchhh----------
Confidence 99999999876655448999999999999987 444 46888999999999999998766654
Q ss_pred hhhccccCceEecCCCcCcc-cCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSG-EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 428 (551)
|.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++
T Consensus 146 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 146 -FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp -TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred -cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 4678899999999999986 57889999999999999999999888899999999999999999999877778899999
Q ss_pred CCeEECCCCccccCCCC-CccC-CccCCcccCCCCCCCCccc
Q 046908 429 LSNFNVSYNNLSGPTPD-KEQF-ATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 429 L~~l~l~~N~l~~~~~~-~~~~-~~~~~~~~~~n~~~c~~~~ 468 (551)
|++|++++|++++..+. ...+ ..+..+++.+|++.|+|..
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 99999999999988776 3444 4788999999999999864
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.8e-28 Score=235.16 Aligned_cols=249 Identities=20% Similarity=0.228 Sum_probs=151.4
Q ss_pred cEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCE
Q 046908 192 YMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271 (551)
Q Consensus 192 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 271 (551)
+.++.+++.++ .+|... .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+. .+..+++|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-----AFTGLALLEQ 84 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----TTTTCTTCCE
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-----hcCCccCCCE
Confidence 34444444444 444332 34555555555555555445555555555555555555543222 2555555555
Q ss_pred EECCCCc-ccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 272 IDIFENS-LSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 272 L~l~~n~-l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
|++++|. +....+..+ .+++|++|++++|.++. ..|..+..+++|++|++++|++++..+..
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------- 148 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGLAALQYLYLQDNALQALPDDT---------- 148 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE------ECHhHhhCCcCCCEEECCCCcccccCHhH----------
Confidence 5555554 444444444 55666666666665541 22444566666777777777666333222
Q ss_pred hhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 429 (551)
|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..|.++++|+.|++++|++++..+..+..+++|
T Consensus 149 -~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 149 -FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp -TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred -hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 3556677777777777775555567778888888888888887777778888888888888888886655667778888
Q ss_pred CeEECCCCccccCCCCCccCCccCCcccCCCCCCCCc
Q 046908 430 SNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGS 466 (551)
Q Consensus 430 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~ 466 (551)
++|++++|++.+.++......++.......+...|..
T Consensus 228 ~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred CEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 8888888888776655433344444444555555543
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3e-30 Score=274.17 Aligned_cols=406 Identities=13% Similarity=0.061 Sum_probs=289.0
Q ss_pred CCCCCCEEECcCCCCcccCCccCCC-CC-CCCEEEcccCc-Ccc-ccchhccCCCCCCEeeCCCCccccccC---hhhhc
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNN-LT-HLKVLDISNNQ-LSG-KVPSTLTNLTSLEYLDRFSINFQGTIS---INSLA 77 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~Ls~n~-i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~ 77 (551)
++++|++|+|++|.+++..+..+.. ++ +|++|+|++|. ++. ..+....++++|++|++++|.+.+.-. ...+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6899999999999888666666655 34 49999999986 221 123334588999999999998764421 12456
Q ss_pred CCCCCCEEEcccCcccc---cccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccc
Q 046908 78 NHSKLEVLLISSGSNML---QVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAG 154 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 154 (551)
.+++|++|++++|.... ......+..+++|++|++++|.+..++..+..+++|++|+++........+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--------- 260 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP--------- 260 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCT---------
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchH---------
Confidence 78999999999987641 111223567899999999999998899999999999999998643221000
Q ss_pred cCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccc-cCCcc
Q 046908 155 KLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG-QIFPK 233 (551)
Q Consensus 155 ~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 233 (551)
..+..+. .+++|+.++++++.. ...|..+..+++|+.|++++|.+++.....++..+++|++|+++ +.+.. ..+..
T Consensus 261 ~~~~~l~-~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~ 337 (592)
T 3ogk_B 261 EKYMNLV-FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL 337 (592)
T ss_dssp TSSSCCC-CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred HHHHHhh-ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence 1111222 267899999988643 35677788899999999999997655444556789999999999 44433 33333
Q ss_pred cCCCCCCCEEeccc-----------ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cccccceeecc--
Q 046908 234 YMNLTHLHWLYLDN-----------NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHLYLQ-- 298 (551)
Q Consensus 234 ~~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~-- 298 (551)
+..+++|++|++++ |.++.. .+......+++|++|+++.|.+++.....+ .+++|++|++.
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQR----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHH----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 46789999999993 455431 344445679999999998888887655555 48999999997
Q ss_pred --ccccccCccceeccCccccccCCCceEEecCCc--ccccCChhhhhhhchhhHhhhccccCceEecCCCcCccc-CCc
Q 046908 299 --KNAITGDNKFFGRIPYQINELSNLHVLLLRGNS--LQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE-IPR 373 (551)
Q Consensus 299 --~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~-~~~ 373 (551)
.|.+++.. ....++..+..+++|+.|++++|. +++..+..+ ...+++|+.|++++|.+++. ++.
T Consensus 414 ~~~n~l~~~p-~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 414 DREERITDLP-LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------GQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp SCCSCCSSCC-CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------HHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCccccCch-HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------HHhCccceEeeccCCCCCHHHHHH
Confidence 45555200 000133446779999999998654 543333322 24578999999999999863 445
Q ss_pred cccCCCCCcEEEcCCCCCCCc-ccccccCCCCCCEEeCCCCcCcccCCCCC-CCCCCCCeEECCCC
Q 046908 374 EIGQLQNIRALNLSNNFLSGA-IPESFSNLKMTESLDLSHNRLSGHIPPQL-TGLNFLSNFNVSYN 437 (551)
Q Consensus 374 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~N 437 (551)
.+.++++|++|++++|.+++. ++..+..+++|+.|++++|+++......+ ..++.+....+..+
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 568899999999999998754 34445678999999999999886533323 34566655555443
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.1e-27 Score=233.93 Aligned_cols=224 Identities=18% Similarity=0.204 Sum_probs=159.6
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCC
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKS 268 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 268 (551)
.+++.|++++|++. .+|..++. +++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~------~lp~~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR------ALPASIASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC------CCCGGGGGCTT
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc------cCcHHHhcCcC
Confidence 34444444444444 44443332 444444444444444 33444445555555555555444 12223455555
Q ss_pred CCEEECCCCcccccCCCcc----------cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCCh
Q 046908 269 LELIDIFENSLSGSLVSSF----------NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 338 (551)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~----------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 338 (551)
|++|++++|.+.+..+..+ ++++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|.
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~N~l~-~l~~ 223 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------SLPASIANLQNLKSLKIRNSPLS-ALGP 223 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-------CCCGGGGGCTTCCEEEEESSCCC-CCCG
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-------cchHhhcCCCCCCEEEccCCCCC-cCch
Confidence 5555555544444443332 4888999999999887 77888889999999999999998 4555
Q ss_pred hhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCccc
Q 046908 339 ELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418 (551)
Q Consensus 339 ~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 418 (551)
. +..+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|..+.++++|+.|++++|.+.+.
T Consensus 224 ~-----------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 224 A-----------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp G-----------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred h-----------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 4 36778899999999999889999999999999999999999889998899999999999999999999
Q ss_pred CCCCCCCCCCCCeEECCCCccc
Q 046908 419 IPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 419 ~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
+|..+..+++|+.+++..|.+.
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGSC
T ss_pred ccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999877664
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4e-27 Score=229.87 Aligned_cols=229 Identities=19% Similarity=0.193 Sum_probs=193.5
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
..+++++|+|++|+++ .+|..+..+++|++|+|++|.++ .+|..|+++++|++|++++|.+. .++ ..+..+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP-ASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCC-GGGGGCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCc-HHHhcCcCCCE
Confidence 3578999999999999 67878889999999999999999 88999999999999999999998 565 35889999999
Q ss_pred EEcccCcccccccCCC--------ccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccC
Q 046908 85 LLISSGSNMLQVKTET--------WHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKL 156 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~--------~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l 156 (551)
|++++|+....++... +..+++|++|++++|.++.+|..+..+++|++|++++|.++ .+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-------------~l 221 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-------------AL 221 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-------------CC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-------------cC
Confidence 9999988777776642 34588999999999999999988999999999999999887 56
Q ss_pred ChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCC
Q 046908 157 PRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMN 236 (551)
Q Consensus 157 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 236 (551)
|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..+ ..+++|++|++++|.+.+.+|..+..
T Consensus 222 ~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 222 GPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred chhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHhh
Confidence 66544 47888899998888888888888888888888888888877777664 55888888888888888888888888
Q ss_pred CCCCCEEecccccccC
Q 046908 237 LTHLHWLYLDNNHFSG 252 (551)
Q Consensus 237 l~~L~~L~L~~n~l~~ 252 (551)
+++|+.+++..+.+..
T Consensus 300 L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 300 LPANCIILVPPHLQAQ 315 (328)
T ss_dssp SCTTCEEECCGGGSCC
T ss_pred ccCceEEeCCHHHHHH
Confidence 8888888887765543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.4e-26 Score=222.08 Aligned_cols=269 Identities=18% Similarity=0.210 Sum_probs=161.1
Q ss_pred CCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
-++++.++++++ .+|..+ .++|++|++++|.+++..++.|.++++|++|++++|.+.+.. ...+..+++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCC
Confidence 368889888888 445433 478999999999999777788899999999999988877443 3456666666666666
Q ss_pred cCcccccccCCCccCCCCccEEEccCCCCCCC-chhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCc
Q 046908 89 SGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI-PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 89 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L 167 (551)
+|.....+++..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------------------- 141 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--------------------------- 141 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---------------------------
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc---------------------------
Confidence 66544444444556666666666666666444 23444455555555555544
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
.+..+..|..+++|+.|++++|+++ .++...+..+++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 142 ----------~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 142 ----------QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp ----------CCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ----------cccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 4444444555566666666666665 45544455566666666666666666566666666666666666
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccc--cCCCceE
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINE--LSNLHVL 325 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~--l~~L~~L 325 (551)
|.+++.. +..+..+++|++|++++|.+....+...-...++.+....+.+.. ..|..+.+ +..++..
T Consensus 211 n~l~~~~-----~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c------~~p~~l~g~~l~~l~~~ 279 (285)
T 1ozn_A 211 NNLSALP-----TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC------SLPQRLAGRDLKRLAAN 279 (285)
T ss_dssp SCCSCCC-----HHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBE------EESGGGTTCBGGGSCGG
T ss_pred CcCCcCC-----HHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCcccc------CCchHhCCcChhhcCHH
Confidence 6665422 233566666666666666665433221122334444444444432 44544433 3444444
Q ss_pred EecCC
Q 046908 326 LLRGN 330 (551)
Q Consensus 326 ~l~~n 330 (551)
++++|
T Consensus 280 ~l~~C 284 (285)
T 1ozn_A 280 DLQGC 284 (285)
T ss_dssp GSCCC
T ss_pred HhccC
Confidence 44444
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.2e-26 Score=241.43 Aligned_cols=260 Identities=22% Similarity=0.241 Sum_probs=140.3
Q ss_pred ccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccc
Q 046908 107 LKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG 186 (551)
Q Consensus 107 L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 186 (551)
++.|++++|.++.+|..+. ++|++|++++|.++ .+|. .+++|+.|++++|.++. +|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-------------~lp~----~l~~L~~L~Ls~N~l~~-lp~--- 98 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-------------SLPA----LPPELRTLEVSGNQLTS-LPV--- 98 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-------------CCCC----CCTTCCEEEECSCCCSC-CCC---
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-------------CCCC----cCCCCCEEEcCCCcCCc-CCC---
Confidence 4455555555555444332 44555555555544 3332 13455555555555542 222
Q ss_pred cCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC
Q 046908 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266 (551)
Q Consensus 187 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 266 (551)
.+++|+.|++++|++. .+|. .+++|+.|++++|+++... . .+++|++|++++|.+++++. .+
T Consensus 99 ~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~~---------~~ 160 (622)
T 3g06_A 99 LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLPA---------LP 160 (622)
T ss_dssp CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC---------CC
T ss_pred CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcCC---------cc
Confidence 3455555555555554 3443 2455555555555554422 1 13555566666655553221 23
Q ss_pred CCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhch
Q 046908 267 KSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRF 346 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 346 (551)
++|+.|++++|.+++.+ ..+++|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.
T Consensus 161 ~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~-------~l~~~---~~~L~~L~L~~N~l~-~l~~-------- 218 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA-------SLPTL---PSELYKLWAYNNRLT-SLPA-------- 218 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-------CCCCC---CTTCCEEECCSSCCS-SCCC--------
T ss_pred CCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC-------CCCCc---cchhhEEECcCCccc-ccCC--------
Confidence 45566666666655543 12456666666666555 33332 255666666666665 3332
Q ss_pred hhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC
Q 046908 347 LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426 (551)
Q Consensus 347 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 426 (551)
.+++|+.|++++|.+++ +| ..+++|+.|++++|+|+. +|. .+++|+.|++++|+++ .+|..+..+
T Consensus 219 ------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 219 ------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp ------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred ------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 12456666666666663 44 344667777777777763 333 4566777777777776 556666677
Q ss_pred CCCCeEECCCCccccCCC
Q 046908 427 NFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 427 ~~L~~l~l~~N~l~~~~~ 444 (551)
++|+.|++++|++++..+
T Consensus 284 ~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CTTCEEECCSCCCCHHHH
T ss_pred cccCEEEecCCCCCCcCH
Confidence 777777777777665443
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=7.6e-26 Score=237.40 Aligned_cols=267 Identities=22% Similarity=0.220 Sum_probs=185.8
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
.+++.|++++|+++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|++++|.+.+ ++. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC----CCCCCCEEE
Confidence 36889999999998 5666565 89999999999998 4554 57889999999998773 442 677888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQK 166 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 166 (551)
+++|.+.. ++. .+++|+.|++++|+++.+|.. .++|++|++++|.++ .+|. .+++
T Consensus 108 Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-------------~l~~----~~~~ 162 (622)
T 3g06_A 108 IFSNPLTH-LPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-------------SLPA----LPSE 162 (622)
T ss_dssp ECSCCCCC-CCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-------------CCCC----CCTT
T ss_pred CcCCcCCC-CCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-------------CcCC----ccCC
Confidence 88776443 322 456788888888888777753 367888888888776 3332 1456
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
|+.|++++|.+.+ +| ..+++|+.|++++|++. .+|. .+++|+.|++++|.++... . .+++|+.|+++
T Consensus 163 L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls 229 (622)
T 3g06_A 163 LCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVS 229 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECC
T ss_pred CCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccccC-C---CCCCCCEEEcc
Confidence 7778888877775 33 34577777777777776 4553 2467777777777776432 2 24677777777
Q ss_pred cccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEE
Q 046908 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLL 326 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~ 326 (551)
+|.+++++ ..+++|+.|++++|.++..+. .+++|++|++++|.|+ .+|..+..+++|+.|+
T Consensus 230 ~N~L~~lp---------~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-------~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 230 GNRLTSLP---------VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-------RLPESLIHLSSETTVN 290 (622)
T ss_dssp SSCCSCCC---------CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-------SCCGGGGGSCTTCEEE
T ss_pred CCccCcCC---------CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-------cCCHHHhhccccCEEE
Confidence 77776532 334677777777777775544 4567777777777766 5666677777777777
Q ss_pred ecCCcccccCChhhhh
Q 046908 327 LRGNSLQGHIPNELCH 342 (551)
Q Consensus 327 l~~n~l~~~~p~~~~~ 342 (551)
+++|++++..|..+..
T Consensus 291 L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 291 LEGNPLSERTLQALRE 306 (622)
T ss_dssp CCSCCCCHHHHHHHHH
T ss_pred ecCCCCCCcCHHHHHh
Confidence 7777777666655543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.7e-27 Score=228.08 Aligned_cols=219 Identities=23% Similarity=0.209 Sum_probs=111.2
Q ss_pred cCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC
Q 046908 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266 (551)
Q Consensus 187 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 266 (551)
.+++|+.|++++|++. .++...+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +...
T Consensus 32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~----------l~~~ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE----------LLVG 98 (317)
T ss_dssp TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE----------EEEC
T ss_pred cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc----------ccCC
Confidence 3344444444444444 3333333444444444444444443322 4444555555555554443 1222
Q ss_pred CCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhch
Q 046908 267 KSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRF 346 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 346 (551)
++|++|++++|.+++..+.. +++|++|++++|.++. ..+..+..+++|++|++++|.+++..|..+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------ 164 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------ 164 (317)
T ss_dssp TTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCS------GGGBCTGGGSSEEEEECTTSCCCEEEGGGG------
T ss_pred CCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCC------ccchhhhccCCCCEEECCCCCCCcccHHHH------
Confidence 45555555555555443332 3455555555555541 223345555566666666666554333332
Q ss_pred hhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC
Q 046908 347 LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426 (551)
Q Consensus 347 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 426 (551)
+..+++|++|++++|.+++. + ....+++|++|++++|++++. +..+..+++|+.|++++|+++ .+|..+..+
T Consensus 165 ----~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 165 ----AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp ----GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred ----hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 23445566666666666533 2 222356666666666666633 333566666666666666666 345556666
Q ss_pred CCCCeEECCCCccc
Q 046908 427 NFLSNFNVSYNNLS 440 (551)
Q Consensus 427 ~~L~~l~l~~N~l~ 440 (551)
++|+.|++++|++.
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 66666666666665
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.5e-27 Score=231.65 Aligned_cols=251 Identities=22% Similarity=0.255 Sum_probs=192.6
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccc-eeCChhhh------hCCCCCCEEECcCCcccccCCccc--
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFS-GELPQPIV------SGCVALDLFDLSNNNFFGQIFPKY-- 234 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~-- 234 (551)
.++|+.+++++|.+ .+|..+... |+.|++++|++. ..+|.... .++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44677777777777 455555443 777788888773 34555442 247888999999998887777765
Q ss_pred CCCCCCCEEecccccccCcCCCchhhHhhccC-----CCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccc
Q 046908 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL-----KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKF 308 (551)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~ 308 (551)
..+++|++|++++|.+++. + ..+..+ ++|++|++++|.+++..+..+ .+++|++|++++|++.+..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~-----~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 189 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-D-----AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER-- 189 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-S-----SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH--
T ss_pred hcCCCccEEEccCCCCcch-h-----HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch--
Confidence 7889999999999988875 2 224444 899999999999998887777 8899999999999865200
Q ss_pred eeccCccc--cccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC-ccccCCCCCcEEE
Q 046908 309 FGRIPYQI--NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP-REIGQLQNIRALN 385 (551)
Q Consensus 309 ~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 385 (551)
.++..+ ..+++|++|++++|++++ ++. +....+.++++|+.|++++|.+++..| ..+..+++|++|+
T Consensus 190 --~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 190 --GLISALCPLKFPTLQVLALRNAGMET-PSG-------VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp --HHHHHSCTTSCTTCCEEECTTSCCCC-HHH-------HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred --HHHHHHHhccCCCCCEEECCCCcCcc-hHH-------HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 123333 788999999999999872 211 122335788999999999999997764 5567789999999
Q ss_pred cCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCcccc
Q 046908 386 LSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 386 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
+++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 260 Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999 6666665 8999999999999966 66 8999999999999999975
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8.4e-28 Score=233.96 Aligned_cols=260 Identities=16% Similarity=0.118 Sum_probs=139.0
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
.++..+++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|++++|.+.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 35566666666665555556677788888888888887777788888888888888888775443 666677777777
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCc
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L 167 (551)
++|.+... + ..++|++|++++|.+..++.. .+++|++|++++|.++
T Consensus 88 s~n~l~~l-~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~-------------------------- 133 (317)
T 3o53_A 88 NNNYVQEL-L-----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKIT-------------------------- 133 (317)
T ss_dssp CSSEEEEE-E-----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCC--------------------------
T ss_pred cCCccccc-c-----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCC--------------------------
Confidence 66653321 1 124566666666665444321 2344555555555444
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
+..+..+..+++|+.|++++|++.+..+..++..+++|++|++++|.+++.. ....+++|++|++++
T Consensus 134 -----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 134 -----------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSS 200 (317)
T ss_dssp -----------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCS
T ss_pred -----------CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCC
Confidence 4334444444444444444444443223333233444555555555444331 112244555555555
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEe
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLL 327 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l 327 (551)
|.+++. +..+..+++|++|++++|.+++.+.....+++|++|++++|.+++ +.+|.++..+++|+.+++
T Consensus 201 N~l~~l------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 201 NKLAFM------GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp SCCCEE------CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH-----HHHHHHHHTCHHHHHHHH
T ss_pred CcCCcc------hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC-----cCHHHHHhccccceEEEC
Confidence 554421 122444455555555555555433222244555555555554431 133444455555555555
Q ss_pred c
Q 046908 328 R 328 (551)
Q Consensus 328 ~ 328 (551)
+
T Consensus 270 ~ 270 (317)
T 3o53_A 270 Q 270 (317)
T ss_dssp H
T ss_pred C
Confidence 5
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=7.5e-29 Score=263.52 Aligned_cols=402 Identities=15% Similarity=0.125 Sum_probs=274.3
Q ss_pred CCCCCCCEEECcCCCCcc---cCCcc------------CCCCCCCCEEEcccCcCccccchhcc-CCCCCCEeeCCCCc-
Q 046908 4 CNLKNLFELDLSSNNFEG---HIPQC------------LNNLTHLKVLDISNNQLSGKVPSTLT-NLTSLEYLDRFSIN- 66 (551)
Q Consensus 4 ~~l~~L~~L~Ls~n~i~~---~~~~~------------~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~- 66 (551)
.++++|++|+++++.... ..|.. +..+++|++|+|++|.+++..+..+. .+++|++|++++|.
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 457899999999875321 22221 24678999999999999877777775 68999999999884
Q ss_pred cccccChhhhcCCCCCCEEEcccCccccccc---CCCccCCCCccEEEccCCC--C--CCCchhhhCCCCCCEEEccCC-
Q 046908 67 FQGTISINSLANHSKLEVLLISSGSNMLQVK---TETWHPTSQLKVLKLSDCH--L--HVIPSFLLQHYHLIFLDLSNN- 138 (551)
Q Consensus 67 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~--l--~~l~~~~~~~~~L~~L~Ls~n- 138 (551)
+........+..+++|++|++++|.+..... ......+++|++|++++|. + ..++.....+++|++|++++|
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 4322122334589999999999987443221 1233467899999999997 2 123334456899999999998
Q ss_pred cccccCCCCCCCcccccCChhHhhhcCCccEEEccCCc-------ccccCCcccccCCCCcEE-ECcCCccceeCChhhh
Q 046908 139 KVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNI-------FEGDIPYSIGEMKELYMQ-DLSRNNFSGELPQPIV 210 (551)
Q Consensus 139 ~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~ 210 (551)
.+. .++..+. .+++|+.|+++.+. +.+ .+..+.++++|+.+ .+.+.... .++.. +
T Consensus 223 ~~~-------------~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~-~ 285 (594)
T 2p1m_B 223 PLE-------------KLATLLQ-RAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAV-Y 285 (594)
T ss_dssp CHH-------------HHHHHHH-HCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGG-H
T ss_pred cHH-------------HHHHHHh-cCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHH-H
Confidence 333 3444443 48899999966543 333 33467888999998 45443332 34433 2
Q ss_pred hCCCCCCEEECcCCcccccCC-cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCC---------Cccc
Q 046908 211 SGCVALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFE---------NSLS 280 (551)
Q Consensus 211 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~---------n~l~ 280 (551)
..+++|++|++++|.+++... ..+..+++|++|++++| +.. ..+......+++|+.|++++ +.++
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~----~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED----AGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH----HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH----HHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 357899999999998765332 23568899999999988 432 13444445689999999843 4454
Q ss_pred ccCCCcc--cccccceeeccccccccCccceeccCccc-cccCCCceEEec--C----CcccccCChhhhhhhchhhHhh
Q 046908 281 GSLVSSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLR--G----NSLQGHIPNELCHVSRFLHRFY 351 (551)
Q Consensus 281 ~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~l~~L~~L~l~--~----n~l~~~~p~~~~~~~~l~~~~~ 351 (551)
+.....+ ++++|++|.+..|.+++ .....+ ..+++|+.|+++ + +.++ ..|..- .+ ...+
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~-~~----~~l~ 428 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTN------AALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDI-GF----GAIV 428 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCH------HHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHH-HH----HHHH
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCH------HHHHHHHhhCCCcceeEeecccCCCccccc-CCchhh-HH----HHHH
Confidence 4333333 48899999888887763 223333 358899999999 3 4444 222110 01 1125
Q ss_pred hccccCceEecCCCcCcccCCccccC-CCCCcEEEcCCCCCCCcccccc-cCCCCCCEEeCCCCcCcccCCC-CCCCCCC
Q 046908 352 SNLKYMAGLDLSSNELSGEIPREIGQ-LQNIRALNLSNNFLSGAIPESF-SNLKMTESLDLSHNRLSGHIPP-QLTGLNF 428 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~ 428 (551)
..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++.....+ .++++|+.|++++|.+++.... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 7788999999987 666555555554 8899999999999876554444 6789999999999998654333 3455789
Q ss_pred CCeEECCCCccc
Q 046908 429 LSNFNVSYNNLS 440 (551)
Q Consensus 429 L~~l~l~~N~l~ 440 (551)
|++|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 999999999873
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.1e-27 Score=240.96 Aligned_cols=244 Identities=23% Similarity=0.196 Sum_probs=156.2
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
+|+.|++++|.+. .++...+..+++|++|+|++|.+++..+ |..+++|++|++++|.+++. ...++|
T Consensus 35 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l----------~~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL----------LVGPSI 101 (487)
T ss_dssp GCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE----------EECTTC
T ss_pred CccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC----------CCCCCc
Confidence 4555555555554 3333344455555555555555554333 55566666666666655532 223566
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
++|++++|.+++..+.. +++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+
T Consensus 102 ~~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--------- 164 (487)
T 3oja_A 102 ETLHAANNNISRVSCSR--GQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--------- 164 (487)
T ss_dssp CEEECCSSCCCCEEECC--CSSCEEEECCSSCCCS------GGGBCGGGGSSEEEEECTTSCCCEEEGGGG---------
T ss_pred CEEECcCCcCCCCCccc--cCCCCEEECCCCCCCC------CCchhhcCCCCCCEEECCCCCCCCcChHHH---------
Confidence 66666666666655442 4667777777777662 345566777888888888888876666554
Q ss_pred hhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 429 (551)
+..+++|+.|+|++|.+++.. ....+++|++|+|++|.+++.++ .+..+++|+.|++++|.+++ +|..+..++.|
T Consensus 165 -~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L 239 (487)
T 3oja_A 165 -AASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239 (487)
T ss_dssp -GGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred -hhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCC
Confidence 235677888888888887552 23357888888888888886444 47788888888888888884 67778888888
Q ss_pred CeEECCCCccccCC-CC-CccCCccCCcccC-------CCCCCCCccc
Q 046908 430 SNFNVSYNNLSGPT-PD-KEQFATFDESSYT-------GNHELCGSLI 468 (551)
Q Consensus 430 ~~l~l~~N~l~~~~-~~-~~~~~~~~~~~~~-------~n~~~c~~~~ 468 (551)
+.+++++|++.+.. |. ...+..+..+... ++++.|.|+.
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 88888888887322 11 2223333333333 6788887653
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.4e-29 Score=264.02 Aligned_cols=409 Identities=15% Similarity=0.073 Sum_probs=278.0
Q ss_pred CCCCCCEEECcCCCCcccCCccCC-CCCCCCEEEcccC-cCccc-cchhccCCCCCCEeeCCCCccccccC---hhhhcC
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLN-NLTHLKVLDISNN-QLSGK-VPSTLTNLTSLEYLDRFSINFQGTIS---INSLAN 78 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~ 78 (551)
++++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. .+..+.++++|++|++++|.+.+..+ ......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 578999999999998876666665 6899999999999 56533 44445689999999999998764322 112237
Q ss_pred CCCCCEEEcccCc--ccccccCCCccCCCCccEEEccCCC-CCCCchhhhCCCCCCEEEccCCcccccCCCCCCCccccc
Q 046908 79 HSKLEVLLISSGS--NMLQVKTETWHPTSQLKVLKLSDCH-LHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGK 155 (551)
Q Consensus 79 l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 155 (551)
+++|++|+++++. ............+++|++|++++|. +..++..+..+++|++|+++.+... ...+.+. .
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~-~ 256 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----VRPDVYS-G 256 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----CCHHHHH-H
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----cchhhHH-H
Confidence 7899999999886 1111111123457899999999994 4668888999999999998765421 1111111 2
Q ss_pred CChhHhhhcCCccEE-EccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccccc-CCcc
Q 046908 156 LPRNMGIVLQKLIYL-DMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ-IFPK 233 (551)
Q Consensus 156 l~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~ 233 (551)
++..+ ..+++|+.+ .+.+... ..++..+..+++|+.|++++|.+.+.....+...+++|+.|++++| +... .+..
T Consensus 257 l~~~l-~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 257 LSVAL-SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HHHHH-HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HHHHH-hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 34433 458889998 4444332 2445555678999999999998765444455667899999999988 4322 2222
Q ss_pred cCCCCCCCEEeccc---------ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cccccceeecc--c-
Q 046908 234 YMNLTHLHWLYLDN---------NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHLYLQ--K- 299 (551)
Q Consensus 234 ~~~l~~L~~L~L~~---------n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~--~- 299 (551)
...+++|++|++.+ +.+++. .+......+++|+.|++..|.+++.....+ .+++|++|+++ +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~----~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQ----GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHH----HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHH----HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 23588999999944 334321 222223458999999998888877554444 58999999999 3
Q ss_pred ---cccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccc-
Q 046908 300 ---NAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI- 375 (551)
Q Consensus 300 ---n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~- 375 (551)
+.++.. .....++..+..+++|+.|++++ .+++..+..+ ...+++|+.|++++|.+++..+..+
T Consensus 410 ~~~~~l~~~-~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l----------~~~~~~L~~L~L~~~~i~~~~~~~l~ 477 (594)
T 2p1m_B 410 KAPDYLTLE-PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI----------GTYAKKMEMLSVAFAGDSDLGMHHVL 477 (594)
T ss_dssp TCCCTTTCC-CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH----------HHHCTTCCEEEEESCCSSHHHHHHHH
T ss_pred CCcccccCC-chhhHHHHHHhhCCCccEEeecC-cccHHHHHHH----------HHhchhccEeeccCCCCcHHHHHHHH
Confidence 444410 00012223366789999999977 5554333322 2347889999999999976655555
Q ss_pred cCCCCCcEEEcCCCCCCCcccc-cccCCCCCCEEeCCCCcCcccCCCCC-CCCCCCCeEECCCCc
Q 046908 376 GQLQNIRALNLSNNFLSGAIPE-SFSNLKMTESLDLSHNRLSGHIPPQL-TGLNFLSNFNVSYNN 438 (551)
Q Consensus 376 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~N~ 438 (551)
.++++|++|++++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 6789999999999999654433 44568999999999999854322223 445666666665554
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.3e-25 Score=210.55 Aligned_cols=209 Identities=23% Similarity=0.259 Sum_probs=127.7
Q ss_pred CCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccc
Q 046908 215 ALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVK 293 (551)
Q Consensus 215 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~ 293 (551)
+|++|++++|.+++..+..|..+++|++|++++|.++...+.. +..+++|++|++++|.+++..+..+ ++++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-----ccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 4455555555554444444555555555555555544332222 4455555555555555555444444 455555
Q ss_pred eeeccccccccCccceeccCccccccCCCceEEecCCccccc-CChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 294 HLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGH-IPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 294 ~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+|++++|.++. ..+..+..+++|++|++++|.+++. +|.. |..+++|+.|++++|.+++..+
T Consensus 104 ~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-----------~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 104 KLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEY-----------FSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp EEECTTSCCCC------STTCCCTTCTTCCEEECCSSCCCCCCCCGG-----------GGGCTTCCEEECCSSCCCEECG
T ss_pred EEECCCCCccc------cCchhcccCCCCCEEECcCCccceecCchh-----------hccCCCCCEEECCCCCCCcCCH
Confidence 55555555541 1122355566666666666666532 3443 3455666677777776665555
Q ss_pred ccccCCCCCc----EEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCC
Q 046908 373 REIGQLQNIR----ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDK 446 (551)
Q Consensus 373 ~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 446 (551)
..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|++++..+..|..+++|++|++++|+++|.++..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 5665555555 788889988866555554 448999999999998776677888999999999999999888754
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.6e-27 Score=227.11 Aligned_cols=252 Identities=16% Similarity=0.100 Sum_probs=131.2
Q ss_pred CCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCcccc-ccChhh------hcCCCCCCEEEcccCcccccccCC
Q 046908 27 LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQG-TISINS------LANHSKLEVLLISSGSNMLQVKTE 99 (551)
Q Consensus 27 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~------~~~l~~L~~L~l~~n~~~~~~~~~ 99 (551)
++..++|+.|++++|.+ .+|..+... |++|++++|.+.. .++... +.++++|++|++++|.+.+..+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45566778888888877 456555443 7777777777742 233211 114666666666666655555443
Q ss_pred Cc-cCCCCccEEEccCCCCCCCchhhhCC-----CCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEcc
Q 046908 100 TW-HPTSQLKVLKLSDCHLHVIPSFLLQH-----YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMP 173 (551)
Q Consensus 100 ~~-~~l~~L~~L~l~~n~l~~l~~~~~~~-----~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~ 173 (551)
.| ..+++|++|++++|.++.+|..+..+ ++|++|++++|.+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-------------------------------- 162 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-------------------------------- 162 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC--------------------------------
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc--------------------------------
Confidence 32 55666666666666665555444443 45555555555544
Q ss_pred CCcccccCCcccccCCCCcEEECcCCccceeC--Chh-hhhCCCCCCEEECcCCcccc---cCCcccCCCCCCCEEeccc
Q 046908 174 KNIFEGDIPYSIGEMKELYMQDLSRNNFSGEL--PQP-IVSGCVALDLFDLSNNNFFG---QIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 174 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~-~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~ 247 (551)
+..+..|.++++|+.|++++|++.+.+ +.. .+..+++|++|++++|++++ .....+..+++|++|++++
T Consensus 163 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 163 -----NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp -----CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred -----cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 444444444455555555555443221 111 12334455555555554442 1112223445555555555
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEe
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLL 327 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l 327 (551)
|.+++..+. ..+..+++|++|++++|.++..+...+ ++|++|++++|+++ .+|. +..+++|++|++
T Consensus 238 N~l~~~~~~----~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~-------~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 238 NSLRDAAGA----PSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD-------RNPS-PDELPQVGNLSL 303 (312)
T ss_dssp SCCCSSCCC----SCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC-------SCCC-TTTSCEEEEEEC
T ss_pred CcCCcccch----hhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC-------CChh-HhhCCCCCEEec
Confidence 555443210 013344556666666665553333222 56666666666665 3344 556666666777
Q ss_pred cCCccc
Q 046908 328 RGNSLQ 333 (551)
Q Consensus 328 ~~n~l~ 333 (551)
++|+++
T Consensus 304 ~~N~l~ 309 (312)
T 1wwl_A 304 KGNPFL 309 (312)
T ss_dssp TTCTTT
T ss_pred cCCCCC
Confidence 666665
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.9e-26 Score=234.17 Aligned_cols=243 Identities=21% Similarity=0.137 Sum_probs=189.5
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
++|+.|++++|.+.+..|..|..+++|+.|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 378888888888877777778888888888888888875444 5668888888888888775432 37888888
Q ss_pred cccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCcccc-ccCCC
Q 046908 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQIN-ELSNL 322 (551)
Q Consensus 245 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~-~l~~L 322 (551)
+++|.+++..+ ..+++|+.|++++|.+++..+..+ .+++|++|++++|.+++ ..|..+. .+++|
T Consensus 106 L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~l~~~l~~L 171 (487)
T 3oja_A 106 AANNNISRVSC--------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------VNFAELAASSDTL 171 (487)
T ss_dssp CCSSCCCCEEE--------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE------EEGGGGGGGTTTC
T ss_pred CcCCcCCCCCc--------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC------cChHHHhhhCCcc
Confidence 88888876432 235788888888888888877766 78889999999888762 4556665 68899
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
+.|++++|.+++. |. ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+
T Consensus 172 ~~L~Ls~N~l~~~-~~------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l 236 (487)
T 3oja_A 172 EHLNLQYNFIYDV-KG------------QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (487)
T ss_dssp CEEECTTSCCCEE-EC------------CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred cEEecCCCccccc-cc------------cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccC
Confidence 9999999998854 22 1357889999999999985 44558899999999999999995 67778899
Q ss_pred CCCCEEeCCCCcCc-ccCCCCCCCCCCCCeEECC-------CCccccCCC
Q 046908 403 KMTESLDLSHNRLS-GHIPPQLTGLNFLSNFNVS-------YNNLSGPTP 444 (551)
Q Consensus 403 ~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l~l~-------~N~l~~~~~ 444 (551)
++|+.|++++|.+. +.+|..+..++.|+.++++ .|+..+.++
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 99999999999998 5667777888888888886 555555443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.2e-24 Score=208.41 Aligned_cols=207 Identities=22% Similarity=0.175 Sum_probs=169.4
Q ss_pred hhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccc
Q 046908 210 VSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNL 289 (551)
Q Consensus 210 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 289 (551)
+..+++++.++++++.++... ..+ .++++.|++++|.+++.. +..|..+++|++|++++|.+++.... ..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFS-----LATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEE-----GGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred ccccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCCccC-----HHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 456788999999999987543 333 268999999999988643 34488999999999999999876554 368
Q ss_pred cccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcc
Q 046908 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG 369 (551)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~ 369 (551)
++|++|++++|.++ .+|..+..+++|++|++++|++++..|.. |.++++|+.|+|++|.+++
T Consensus 77 ~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-----------~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-------SLPLLGQTLPALTVLDVSFNRLTSLPLGA-----------LRGLGELQELYLKGNELKT 138 (290)
T ss_dssp TTCCEEECCSSCCS-------SCCCCTTTCTTCCEEECCSSCCCCCCSST-----------TTTCTTCCEEECTTSCCCC
T ss_pred CcCCEEECCCCcCC-------cCchhhccCCCCCEEECCCCcCcccCHHH-----------HcCCCCCCEEECCCCCCCc
Confidence 89999999999887 67888888899999999999988444443 4777888999999999987
Q ss_pred cCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 370 EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 370 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+..++.|+.+++++|++.|.+.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 77777888899999999999998777777888999999999999998 677777777889999999999887663
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-23 Score=199.22 Aligned_cols=207 Identities=24% Similarity=0.298 Sum_probs=143.6
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
..+.+++++++++ .+|..+ .++++.|++++|.+....+.+|..+++|++|++++|.++.+.+.. |..+++|
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~-----~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----FKELKNL 87 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT-----TSSCTTC
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh-----hcCCCCC
Confidence 4566677777666 566543 245667777777666655556666666666666666665443332 4555666
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
++|++++|.+++..+.. +..+++|++|++++|.+++..+..
T Consensus 88 ~~L~l~~n~l~~~~~~~-----------------------------~~~l~~L~~L~l~~n~l~~~~~~~---------- 128 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGV-----------------------------FDQLVNLAELRLDRNQLKSLPPRV---------- 128 (270)
T ss_dssp CEEECCSSCCCCCCTTT-----------------------------TTTCSSCCEEECCSSCCCCCCTTT----------
T ss_pred CEEECCCCcCCcCCHhH-----------------------------cccccCCCEEECCCCccCeeCHHH----------
Confidence 66666655555444333 344555555555555555333322
Q ss_pred hhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 429 (551)
|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|
T Consensus 129 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 129 -FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp -TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 3556677777777777775556668888999999999999998777789999999999999999997777778899999
Q ss_pred CeEECCCCccccCCCC
Q 046908 430 SNFNVSYNNLSGPTPD 445 (551)
Q Consensus 430 ~~l~l~~N~l~~~~~~ 445 (551)
+.|++++|++.+.++.
T Consensus 208 ~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 208 KMLQLQENPWDCTCNG 223 (270)
T ss_dssp CEEECCSSCBCCSSSS
T ss_pred CEEEecCCCeeCCCcc
Confidence 9999999999888764
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.2e-24 Score=202.52 Aligned_cols=209 Identities=24% Similarity=0.239 Sum_probs=135.5
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
+++.|++++|+++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.. +..+++|
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-----FSGLSSL 102 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-----TTTCTTC
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-----hcCCccc
Confidence 4555555555554 333333444555555555555555554455555555555555555555433222 5556666
Q ss_pred CEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhh
Q 046908 270 ELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 348 (551)
++|++++|.+.+..+..+ .+++|++|++++|.++. ..+|..+..+++|++|++++|++++..+..+..+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----- 172 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL----- 172 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-----CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-----
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccce-----ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-----
Confidence 666666666655555444 56677777777776651 0256778888888888888888886555544322
Q ss_pred HhhhccccCc-eEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCccc
Q 046908 349 RFYSNLKYMA-GLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418 (551)
Q Consensus 349 ~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 418 (551)
..++.+. .|++++|.+++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++.+.
T Consensus 173 ---~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 173 ---HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp ---HTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ---hhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 2223333 7999999998665555544 5899999999999987777889999999999999999853
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=8.8e-24 Score=202.31 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=129.0
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
+.++++++.+++++++++ .+|..+ .++++.|++++|.+.+..+..|..+++|++|++++|.++.... ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DG 74 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CS
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------CC
Confidence 455666777777777776 666554 2566777777777766666667777777777777777664332 24
Q ss_pred cCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccC-ccccccCCCceEEecCCcccccCChhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHV 343 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 343 (551)
.+++|++|++++|.++..+.....+++|++|++++|+++ .+| ..|..+++|++|++++|++++. |...
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-------~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~--- 143 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-------SLPLGALRGLGELQELYLKGNELKTL-PPGL--- 143 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-------CCCSSTTTTCTTCCEEECTTSCCCCC-CTTT---
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-------ccCHHHHcCCCCCCEEECCCCCCCcc-Chhh---
Confidence 566777777777777654433236677777777777665 333 4466677777777777776633 3221
Q ss_pred hchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 344 ~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
|..+++|+.|+|++|++++..+..|.++++|++|++++|+++ .+|..+..+++|+.|++++|.+.
T Consensus 144 -------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 144 -------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred -------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 455666777777777776555555666777777777777776 44555555667777777777664
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.8e-23 Score=198.48 Aligned_cols=202 Identities=22% Similarity=0.303 Sum_probs=160.9
Q ss_pred CCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCcc-cc
Q 046908 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQ-IN 317 (551)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~ 317 (551)
.++++++++.++.++.. + .++++.|++++|.+++..+..+ .+++|++|++++|.++ .+|.. +.
T Consensus 18 ~~~l~~~~~~l~~ip~~------~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~i~~~~~~ 82 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSN------I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-------TLPAGIFK 82 (270)
T ss_dssp TTEEECTTSCCSSCCSC------C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-------CCCTTTTS
T ss_pred CCEEEccCCCCCccCCC------C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-------eeChhhhc
Confidence 45566666665543221 1 1456677777777766666555 6777777777777766 44443 56
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccc
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPE 397 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 397 (551)
.+++|++|++++|++++ +|... |..+++|++|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 83 ~l~~L~~L~l~~n~l~~-~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQA-LPIGV----------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp SCTTCCEEECCSSCCCC-CCTTT----------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCEEECCCCcCCc-CCHhH----------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 78899999999998884 33322 57889999999999999988888899999999999999999987777
Q ss_pred cccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 398 SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 398 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
.|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+. ...+..+..+++.+|||.|+|.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 899999999999999999987777899999999999999999987765 5567888999999999999986
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3e-24 Score=212.96 Aligned_cols=261 Identities=19% Similarity=0.215 Sum_probs=141.2
Q ss_pred EccCCcccccCCcccccCCCCcEEECcCCccceeCCh----hhhhCCC-CCCEEECcCCcccccCCcccCCC-----CCC
Q 046908 171 DMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQ----PIVSGCV-ALDLFDLSNNNFFGQIFPKYMNL-----THL 240 (551)
Q Consensus 171 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L 240 (551)
.++.|.+.+..|..+...++|+.|++++|++. ..+. ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34444444444443333344555555555554 3332 3333444 55555555555554444434332 556
Q ss_pred CEEecccccccCcCCCchhhHhhccC-CCCCEEECCCCcccccCCCcc-----c-ccccceeeccccccccCccceeccC
Q 046908 241 HWLYLDNNHFSGKMDDANILVQLSQL-KSLELIDIFENSLSGSLVSSF-----N-LSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-----~-~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
++|++++|.+++.... .+...+..+ ++|++|++++|.+++.....+ . .++|++|++++|.+++.. ...++
T Consensus 83 ~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~l~ 159 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--SDELI 159 (362)
T ss_dssp CEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--HHHHH
T ss_pred cEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--HHHHH
Confidence 6666666655542221 222234444 566666666666655544333 1 246666666666665211 11223
Q ss_pred ccccccC-CCceEEecCCcccccCChhhhhhhchhhHhhhcc-ccCceEecCCCcCccc----CCccccC-CCCCcEEEc
Q 046908 314 YQINELS-NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL-KYMAGLDLSSNELSGE----IPREIGQ-LQNIRALNL 386 (551)
Q Consensus 314 ~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~L 386 (551)
..+..++ +|++|++++|++++..+..++. .+..+ ++|+.|+|++|.+++. ++..+.. .++|++|+|
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAK-------FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHH-------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHH-------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 3344444 7777777777776555444322 13444 3777777777777642 3334444 347778888
Q ss_pred CCCCCCCccc----ccccCCCCCCEEeCCCCcCccc-------CCCCCCCCCCCCeEECCCCccccC
Q 046908 387 SNNFLSGAIP----ESFSNLKMTESLDLSHNRLSGH-------IPPQLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 387 ~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~-------~p~~~~~l~~L~~l~l~~N~l~~~ 442 (551)
++|.+++..+ ..+..+++|+.|++++|.+... ++..+..++.|+.+|+++|++...
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8777775433 3346677788888888774322 334566777788888888877544
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.6e-23 Score=195.23 Aligned_cols=202 Identities=18% Similarity=0.228 Sum_probs=104.7
Q ss_pred CCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCc
Q 046908 104 TSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183 (551)
Q Consensus 104 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~ 183 (551)
+++|+.|++++|.+..++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+.
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-------------~~~--~l~~l~~L~~L~L~~n~l~~~~~~ 103 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-------------DIS--ALKELTNLTYLILTGNQLQSLPNG 103 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-------------CCG--GGTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-------------Cch--hhcCCCCCCEEECCCCccCccChh
Confidence 344555555555554443 2444555555555555544 111 111244555555555555544444
Q ss_pred ccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 184 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
.|..+++|++|++++|++. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+.. +
T Consensus 104 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~ 177 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV-----F 177 (272)
T ss_dssp TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----T
T ss_pred HhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH-----h
Confidence 4555555555555555555 444444445555555555555555555555555555555555555555433322 4
Q ss_pred ccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhh
Q 046908 264 SQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 340 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 340 (551)
..+++|++|++++|.+++..+..+ .+++|++|++++|.+. +.+++|+.+++..|.++|.+|..+
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 555555555555555555555444 4555555555555443 123455555555555555555544
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.6e-22 Score=192.00 Aligned_cols=210 Identities=20% Similarity=0.232 Sum_probs=158.5
Q ss_pred cCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccC
Q 046908 77 ANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKL 156 (551)
Q Consensus 77 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l 156 (551)
..+++|+.|+++++... .+ ..+..+++|++|++++|.+..++ .+..+++|++|++++|.++ .+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~-------------~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SV--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ-------------SL 100 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CC--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC-------------CC
T ss_pred ccccceeeeeeCCCCcc-cc--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC-------------cc
Confidence 34455666666555422 11 13566777778888888776654 5777788888888888777 45
Q ss_pred ChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCC
Q 046908 157 PRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMN 236 (551)
Q Consensus 157 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 236 (551)
+...+..+++|++|++++|.+.+..+..|..+++|+.|++++|++. .++...+..+++|+.|++++|++++..+..|..
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 5555555788888888888888777777888888999999998887 677777777889999999999888877777888
Q ss_pred CCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccc
Q 046908 237 LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI 316 (551)
Q Consensus 237 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 316 (551)
+++|++|++++|.+++..+.. +..+++|++|++++|.+.+. +++|+.+++..|.++ |.+|.++
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~------g~ip~~~ 242 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGV-----FDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHS------GVVRNSA 242 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTT-----TTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTG------GGBBCTT
T ss_pred CccCCEEECCCCcCCccCHHH-----HhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCC------CcccCcc
Confidence 899999999999888755543 78889999999999977653 667888888888776 3778777
Q ss_pred cccCC
Q 046908 317 NELSN 321 (551)
Q Consensus 317 ~~l~~ 321 (551)
+.++.
T Consensus 243 ~~~~~ 247 (272)
T 3rfs_A 243 GSVAP 247 (272)
T ss_dssp SCBCG
T ss_pred cccCC
Confidence 65544
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=196.79 Aligned_cols=237 Identities=18% Similarity=0.155 Sum_probs=177.4
Q ss_pred CCCcEEECcCCccceeCChhh--hhCCCCCCEEECcCCcccccCCccc--CCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 189 KELYMQDLSRNNFSGELPQPI--VSGCVALDLFDLSNNNFFGQIFPKY--MNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
..++.+.+.++.+....-..+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+.. ....+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL-AELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-HHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh-HHHHhh
Confidence 346667776665542111111 1124679999999999988888887 88999999999999988643311 113456
Q ss_pred cCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHV 343 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 343 (551)
.+++|++|++++|.+.+..+..+ .+++|++|++++|++.....+ ..+..+..+++|++|++++|+++ .++..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~---- 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL--MAALCPHKFPAIQNLALRNTGME-TPTGV---- 215 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH--HTTSCTTSSCCCCSCBCCSSCCC-CHHHH----
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh--hHHHhhhcCCCCCEEECCCCCCC-chHHH----
Confidence 89999999999999998888777 899999999999986521000 11233467899999999999986 22221
Q ss_pred hchhhHhhhccccCceEecCCCcCcccCCccccCC---CCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCC
Q 046908 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL---QNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP 420 (551)
Q Consensus 344 ~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 420 (551)
....+..+++|++|+|++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |
T Consensus 216 ---~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 216 ---CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp ---HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred ---HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 11125778999999999999998878777776 69999999999999 5566553 8999999999999954 4
Q ss_pred CCCCCCCCCCeEECCCCcccc
Q 046908 421 PQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 421 ~~~~~l~~L~~l~l~~N~l~~ 441 (551)
. +..++.|+.|++++|+++.
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 6788999999999999863
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.5e-22 Score=188.52 Aligned_cols=196 Identities=16% Similarity=0.227 Sum_probs=132.0
Q ss_pred CCCCEEECcCCcccccCCcccCCCCCCCEEeccccc-ccCcCCCchhhHhhccCCCCCEEECCC-CcccccCCCcc-ccc
Q 046908 214 VALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNH-FSGKMDDANILVQLSQLKSLELIDIFE-NSLSGSLVSSF-NLS 290 (551)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~~~ 290 (551)
.+|++|++++|++++..+..|.++++|++|++++|. ++.+.+.. |..+++|++|++++ |.+++..+..| +++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-----FYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-----EESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-----cCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 356666666666666666666666777777777765 65544333 66677777777776 67766666666 677
Q ss_pred ccceeeccccccccCccceeccCccccccCCCc---eEEecCC-cccccCChhhhhhhchhhHhhhccccCc-eEecCCC
Q 046908 291 SVKHLYLQKNAITGDNKFFGRIPYQINELSNLH---VLLLRGN-SLQGHIPNELCHVSRFLHRFYSNLKYMA-GLDLSSN 365 (551)
Q Consensus 291 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~~~l~~~~~~~l~~L~-~L~Ls~n 365 (551)
+|++|++++|.++ .+|. +..+++|+ +|++++| .+++..+.. |.++++|+ .|++++|
T Consensus 106 ~L~~L~l~~n~l~-------~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-----------~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 106 LLKFLGIFNTGLK-------MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-----------FQGLCNETLTLKLYNN 166 (239)
T ss_dssp TCCEEEEEEECCC-------SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-----------TTTTBSSEEEEECCSC
T ss_pred CCCEEeCCCCCCc-------cccc-cccccccccccEEECCCCcchhhcCccc-----------ccchhcceeEEEcCCC
Confidence 7777777777766 4554 56666666 7888887 666333222 46677777 8888888
Q ss_pred cCcccCCccccCCCCCcEEEcCCCC-CCCcccccccCC-CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCC
Q 046908 366 ELSGEIPREIGQLQNIRALNLSNNF-LSGAIPESFSNL-KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 437 (551)
.++...+..|.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++ +|.. .++.|+.|+++++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 777433344444 778888888884 876666778888 888888888888874 3433 4567788887766
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.2e-23 Score=189.93 Aligned_cols=208 Identities=16% Similarity=0.177 Sum_probs=124.2
Q ss_pred CcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCc-cccccChhhhcCCCCCCEEEccc-Ccccccc
Q 046908 19 FEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN-FQGTISINSLANHSKLEVLLISS-GSNMLQV 96 (551)
Q Consensus 19 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~ 96 (551)
++ .+|. +. ++|++|++++|.++++.+.+|.++++|++|++++|. +. .++...|.++++|++|++++ |. ...+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~-l~~i 96 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRN-LTYI 96 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETT-CCEE
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCC-eeEc
Confidence 44 4454 33 478888888888887666678888888888888886 44 45555667777777777776 44 3445
Q ss_pred cCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCC-
Q 046908 97 KTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN- 175 (551)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n- 175 (551)
+...|..+++|++|++++|.++.+|. +..+++|+ .|+.|++++|
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~----------------------------------~L~~L~l~~N~ 141 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD----------------------------------IFFILEITDNP 141 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCC----------------------------------SEEEEEEESCT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccc----------------------------------cccEEECCCCc
Confidence 55566667777777777777666664 44444444 1114444444
Q ss_pred cccccCCcccccCCCCc-EEECcCCccceeCChhhhhCCCCCCEEECcCCc-ccccCCcccCCC-CCCCEEecccccccC
Q 046908 176 IFEGDIPYSIGEMKELY-MQDLSRNNFSGELPQPIVSGCVALDLFDLSNNN-FFGQIFPKYMNL-THLHWLYLDNNHFSG 252 (551)
Q Consensus 176 ~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~ 252 (551)
.+.+..+..|.++++|+ .|++++|++. .+|...|.. ++|+.|++++|+ ++...+..|..+ ++|+.|++++|.++.
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 44444444455555555 5566555555 555555443 556666666663 555555555566 666666666666654
Q ss_pred cCCCchhhHhhccCCCCCEEECCCC
Q 046908 253 KMDDANILVQLSQLKSLELIDIFEN 277 (551)
Q Consensus 253 ~~~~~~~~~~~~~l~~L~~L~l~~n 277 (551)
.+.. .+++|+.|+++++
T Consensus 220 l~~~--------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 220 LPSK--------GLEHLKELIARNT 236 (239)
T ss_dssp CCCT--------TCTTCSEEECTTC
T ss_pred CChh--------HhccCceeeccCc
Confidence 3221 3455666665554
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2e-23 Score=207.04 Aligned_cols=180 Identities=18% Similarity=0.202 Sum_probs=88.8
Q ss_pred EEccCCCCCC-CchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCCh----hHhhhcC-CccEEEccCCcccccCCc
Q 046908 110 LKLSDCHLHV-IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPR----NMGIVLQ-KLIYLDMPKNIFEGDIPY 183 (551)
Q Consensus 110 L~l~~n~l~~-l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~----~~~~~l~-~L~~L~L~~n~~~~~~~~ 183 (551)
..++.|.++. +|..+...++|++|++++|.++ ..+. ..+..++ +|++|++++|.+.+..+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 69 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-------------SISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-------------GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCC-------------hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence 3455566643 3333334444666666666665 3332 2233344 566666666666555444
Q ss_pred ccccC-----CCCcEEECcCCccceeCChhh---hhCC-CCCCEEECcCCcccccCCccc----CC-CCCCCEEeccccc
Q 046908 184 SIGEM-----KELYMQDLSRNNFSGELPQPI---VSGC-VALDLFDLSNNNFFGQIFPKY----MN-LTHLHWLYLDNNH 249 (551)
Q Consensus 184 ~~~~l-----~~L~~L~L~~n~l~~~~~~~~---~~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~ 249 (551)
.+..+ ++|++|++++|++++..+..+ +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 44443 666666666666653322221 2222 566666666666654443322 22 2456666666665
Q ss_pred ccCcCCCchhhHhhccCC-CCCEEECCCCcccccCCCcc-----cc-cccceeeccccccc
Q 046908 250 FSGKMDDANILVQLSQLK-SLELIDIFENSLSGSLVSSF-----NL-SSVKHLYLQKNAIT 303 (551)
Q Consensus 250 l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~-----~~-~~L~~L~L~~n~l~ 303 (551)
++..... .++..+..++ +|++|++++|.+++..+..+ .. ++|++|+|++|.++
T Consensus 150 l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 150 LGIKSSD-ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp GGGSCHH-HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred CCHHHHH-HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 5532111 2333444444 56666666665555443222 12 35555555555544
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1e-21 Score=184.23 Aligned_cols=191 Identities=21% Similarity=0.235 Sum_probs=130.1
Q ss_pred CCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
++++.|++++|.+++..+..+ .+++|++|++++|.++. ..+..+..+++|++|++++|++++..+..
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------ 102 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------LSAGVFDDLTELGTLGLANNQLASLPLGV------ 102 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCCCCCTTT------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc------cCHhHhccCCcCCEEECCCCcccccChhH------
Confidence 345555555555555555444 55666666666665542 23344666777777777777776333332
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCC
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTG 425 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 425 (551)
|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..
T Consensus 103 -----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 103 -----FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp -----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -----hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 466778888888888888666667888999999999999999877778999999999999999999887888999
Q ss_pred CCCCCeEECCCCccccCCCCCccCCc-c-----CCcccCCCCCCCCccccCCCCCC
Q 046908 426 LNFLSNFNVSYNNLSGPTPDKEQFAT-F-----DESSYTGNHELCGSLIRKKCSSA 475 (551)
Q Consensus 426 l~~L~~l~l~~N~l~~~~~~~~~~~~-~-----~~~~~~~n~~~c~~~~~~~c~~~ 475 (551)
+++|++|++++|++.+.......+.. + ...+..++. .|+.+....|..+
T Consensus 178 l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 178 LGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp CTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 99999999999999887443211111 1 111223333 4556666777765
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1e-23 Score=211.29 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=45.0
Q ss_pred hccccCceEecCCCcCc----ccCCccccCCCCCcEEEcCCCCCCCc----cccccc--CCCCCCEEeCCCCcCcc----
Q 046908 352 SNLKYMAGLDLSSNELS----GEIPREIGQLQNIRALNLSNNFLSGA----IPESFS--NLKMTESLDLSHNRLSG---- 417 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~---- 417 (551)
..+++|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++. ++..+. .+++|+.|++++|.++.
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 34445555555555553 23444455555555555555555433 233332 25555555555555554
Q ss_pred cCCCCC-CCCCCCCeEECCCCccccCC
Q 046908 418 HIPPQL-TGLNFLSNFNVSYNNLSGPT 443 (551)
Q Consensus 418 ~~p~~~-~~l~~L~~l~l~~N~l~~~~ 443 (551)
.+|..+ ..+++|++|++++|++++..
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcch
Confidence 244433 33455555555555555433
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9.3e-23 Score=200.36 Aligned_cols=233 Identities=18% Similarity=0.207 Sum_probs=124.1
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
+.++.+++++|.+.+..+. +..+++|+.|++++|.+.+......+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4556666666655544433 334566666666666554321122334455566666665555544444555555555555
Q ss_pred cccc-cccCcCCCchhhHhhccCCCCCEEECCCC-cccccCCCcccccccceeeccccccccCccceeccCccccccC-C
Q 046908 245 LDNN-HFSGKMDDANILVQLSQLKSLELIDIFEN-SLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELS-N 321 (551)
Q Consensus 245 L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~-~ 321 (551)
+++| .+++. .++..+..+++|++|++++| .+++. .++..+..++ +
T Consensus 149 L~~~~~l~~~----~l~~~~~~~~~L~~L~l~~~~~l~~~----------------------------~~~~~~~~l~~~ 196 (336)
T 2ast_B 149 LSGCSGFSEF----ALQTLLSSCSRLDELNLSWCFDFTEK----------------------------HVQVAVAHVSET 196 (336)
T ss_dssp CTTCBSCCHH----HHHHHHHHCTTCCEEECCCCTTCCHH----------------------------HHHHHHHHSCTT
T ss_pred CCCCCCCCHH----HHHHHHhcCCCCCEEcCCCCCCcChH----------------------------HHHHHHHhcccC
Confidence 5555 33321 13333445555555555555 44332 1233344555 6
Q ss_pred CceEEecCCc--cc-ccCChhhhhhhchhhHhhhccccCceEecCCCc-CcccCCccccCCCCCcEEEcCCCC-CCCccc
Q 046908 322 LHVLLLRGNS--LQ-GHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNE-LSGEIPREIGQLQNIRALNLSNNF-LSGAIP 396 (551)
Q Consensus 322 L~~L~l~~n~--l~-~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 396 (551)
|++|++++|. ++ +.+|. .+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.....
T Consensus 197 L~~L~l~~~~~~~~~~~l~~-----------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLST-----------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHH-----------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred CCEEEeCCCcccCCHHHHHH-----------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 6666666663 22 11111 13456666777777666 555556666777777777777774 222222
Q ss_pred ccccCCCCCCEEeCCCCcCcccCCCCCCCC-CCCCeEECCCCccccCCCC
Q 046908 397 ESFSNLKMTESLDLSHNRLSGHIPPQLTGL-NFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 397 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~~ 445 (551)
..+.++++|+.|++++| +. ...+..+ ..+..|++++|++++..|.
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCC
Confidence 24666777777777777 22 1233333 2366667777777776664
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.3e-23 Score=202.77 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=169.2
Q ss_pred CCcEEECcCCccceeCChhhhhCC--CCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGC--VALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
.++.++++++.+. ...+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. .++..+..++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS----TLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----HHHHHHTTBC
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----HHHHHHhhCC
Confidence 4677788777664 2233334 6788888888888766554 45688888888888877541 2666788888
Q ss_pred CCCEEECCCCcccccCCCcc-cccccceeecccc-ccccCccceeccCccccccCCCceEEecCC-ccccc-CChhhhhh
Q 046908 268 SLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKN-AITGDNKFFGRIPYQINELSNLHVLLLRGN-SLQGH-IPNELCHV 343 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~ 343 (551)
+|++|++++|.+++..+..+ .+++|++|++++| .+++ ..++..+..+++|++|++++| .+++. ++.
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~----- 188 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-----FALQTLLSSCSRLDELNLSWCFDFTEKHVQV----- 188 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-----HHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-----
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-----HHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-----
Confidence 88888888888876655555 6888899999888 5542 024566788999999999999 88743 222
Q ss_pred hchhhHhhhccc-cCceEecCCC--cCc-ccCCccccCCCCCcEEEcCCCC-CCCcccccccCCCCCCEEeCCCCc-Ccc
Q 046908 344 SRFLHRFYSNLK-YMAGLDLSSN--ELS-GEIPREIGQLQNIRALNLSNNF-LSGAIPESFSNLKMTESLDLSHNR-LSG 417 (551)
Q Consensus 344 ~~l~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 417 (551)
.+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +..
T Consensus 189 ------~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 189 ------AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp ------HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred ------HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 246788 9999999999 555 3567778889999999999999 777777889999999999999996 322
Q ss_pred cCCCCCCCCCCCCeEECCCC
Q 046908 418 HIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 418 ~~p~~~~~l~~L~~l~l~~N 437 (551)
.....+..+++|++|++++|
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHhcCCCCCEEeccCc
Confidence 22225778999999999999
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=195.28 Aligned_cols=226 Identities=18% Similarity=0.152 Sum_probs=173.0
Q ss_pred CCCCEEECcCCCCcccC-Cc--cCCCCCCCCEEEcccCcCccccchhc--cCCCCCCEeeCCCCccccccC---hhhhcC
Q 046908 7 KNLFELDLSSNNFEGHI-PQ--CLNNLTHLKVLDISNNQLSGKVPSTL--TNLTSLEYLDRFSINFQGTIS---INSLAN 78 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~-~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~---~~~~~~ 78 (551)
..++.+.+.++.+.... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35788888888775311 11 12345779999999999998899888 899999999999999886544 234567
Q ss_pred CCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCC---Cch--hhhCCCCCCEEEccCCcccccCCCCCCCccc
Q 046908 79 HSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV---IPS--FLLQHYHLIFLDLSNNKVVGNFPICSNNNFA 153 (551)
Q Consensus 79 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 153 (551)
+++|++|++++|.+ ..+++..|..+++|++|++++|++.. ++. .+..+++|++|++++|.++
T Consensus 144 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------ 210 (310)
T 4glp_A 144 KPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME------------ 210 (310)
T ss_dssp CSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC------------
T ss_pred ccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC------------
Confidence 99999999999886 45556678999999999999999743 332 3467889999999999886
Q ss_pred ccCCh---hHhhhcCCccEEEccCCcccccCCcccccC---CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccc
Q 046908 154 GKLPR---NMGIVLQKLIYLDMPKNIFEGDIPYSIGEM---KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFF 227 (551)
Q Consensus 154 ~~l~~---~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 227 (551)
.++. .++..+++|++|++++|.+.+..|..+..+ ++|+.|++++|+++ .+|..++ ++|+.|++++|+++
T Consensus 211 -~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 211 -TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLN 285 (310)
T ss_dssp -CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCC
T ss_pred -chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCC
Confidence 3443 344567899999999999988777777666 58888888888887 7777652 67888888888887
Q ss_pred ccCCcccCCCCCCCEEecccccccC
Q 046908 228 GQIFPKYMNLTHLHWLYLDNNHFSG 252 (551)
Q Consensus 228 ~~~~~~~~~l~~L~~L~L~~n~l~~ 252 (551)
+. | .+..+++|+.|++++|+++.
T Consensus 286 ~~-~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 286 RA-P-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred CC-c-hhhhCCCccEEECcCCCCCC
Confidence 54 2 25667778888888777754
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.4e-21 Score=192.71 Aligned_cols=223 Identities=19% Similarity=0.173 Sum_probs=149.2
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCE-EECcCCcccccCCcccCCCCCCCEE
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDL-FDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
+++++|+|++|+++.+.+.+|.++++|++|+|++|++.+.+|..+|.++++++. +.+++|++....+.+|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456777777777776666677778888888888888765677777777777665 5556677877777788888888888
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCC-CcccccCCCcc-cc-cccceeeccccccccCccceeccCccccccC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFE-NSLSGSLVSSF-NL-SSVKHLYLQKNAITGDNKFFGRIPYQINELS 320 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~ 320 (551)
++++|.+....+.. +....++..+++.+ +.+.......| .+ ..++.|++++|.|+ .+|.......
T Consensus 110 ~l~~n~l~~~~~~~-----~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-------~i~~~~f~~~ 177 (350)
T 4ay9_X 110 LISNTGIKHLPDVH-----KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-------EIHNSAFNGT 177 (350)
T ss_dssp EEEEECCSSCCCCT-----TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-------EECTTSSTTE
T ss_pred cccccccccCCchh-----hcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-------CCChhhcccc
Confidence 88888887655443 55556677777754 46666666655 33 45777888888776 5666655566
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
+|+.+++.+|+..+.+|... |.++++|+.|++++|+++...+.. +.+|+.|.+.++.-...+| .+.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~----------f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDV----------FHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTT----------TTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred chhHHhhccCCcccCCCHHH----------hccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 77788877543333555543 567777788888888777433333 3455555554443222444 366
Q ss_pred CCCCCCEEeCCCC
Q 046908 401 NLKMTESLDLSHN 413 (551)
Q Consensus 401 ~l~~L~~L~l~~n 413 (551)
.+++|+.++++++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 7777888887764
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.1e-23 Score=208.97 Aligned_cols=251 Identities=19% Similarity=0.205 Sum_probs=192.6
Q ss_pred cCChhHhhhcCCccEEEccCCcccccCC----cccccCCCCcEEECcCC---ccceeCChhh------hhCCCCCCEEEC
Q 046908 155 KLPRNMGIVLQKLIYLDMPKNIFEGDIP----YSIGEMKELYMQDLSRN---NFSGELPQPI------VSGCVALDLFDL 221 (551)
Q Consensus 155 ~l~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n---~l~~~~~~~~------~~~l~~L~~L~L 221 (551)
.++..+.. +++|+.|++++|.+....+ ..+..+++|+.|++++| ++.+.+|..+ +..+++|++|++
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 45555554 7899999999999987643 34778999999999996 4445566554 367899999999
Q ss_pred cCCcccc----cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC---------CCCCEEECCCCccccc-CC---
Q 046908 222 SNNNFFG----QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL---------KSLELIDIFENSLSGS-LV--- 284 (551)
Q Consensus 222 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l---------~~L~~L~l~~n~l~~~-~~--- 284 (551)
++|.+.. ..+..+..+++|++|++++|.++..... .++..+..+ ++|++|++++|.++.. .+
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 9999987 4566788899999999999998642211 234445555 9999999999999733 22
Q ss_pred Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccc----cCChhhhhhhchhhHhhhccccCce
Q 046908 285 SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG----HIPNELCHVSRFLHRFYSNLKYMAG 359 (551)
Q Consensus 285 ~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~~~~l~~~~~~~l~~L~~ 359 (551)
..+ .+++|++|++++|.++.. +....++..+..+++|+.|++++|.++. .+|. .+..+++|+.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~-g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-----------~l~~~~~L~~ 248 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPE-GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-----------ALKSWPNLRE 248 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHH-HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-----------HGGGCTTCCE
T ss_pred HHHHhCCCcCEEECcCCCCCHh-HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-----------HHccCCCcCE
Confidence 233 688999999999988621 0111233478889999999999999862 3333 2577889999
Q ss_pred EecCCCcCccc----CCcccc--CCCCCcEEEcCCCCCCC----cccccc-cCCCCCCEEeCCCCcCcccC
Q 046908 360 LDLSSNELSGE----IPREIG--QLQNIRALNLSNNFLSG----AIPESF-SNLKMTESLDLSHNRLSGHI 419 (551)
Q Consensus 360 L~Ls~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 419 (551)
|+|++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999999865 466664 48999999999999997 366666 66899999999999998654
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=6e-22 Score=195.29 Aligned_cols=208 Identities=19% Similarity=0.232 Sum_probs=144.8
Q ss_pred CEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEccc
Q 046908 10 FELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISS 89 (551)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 89 (551)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|.+.+.++..+|.+++++.++....
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67889999998 566655 368999999999999766778999999999999999988888888899999888765544
Q ss_pred CcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCC-cccccCCCCCCCcccccCChhHhhhc-CC
Q 046908 90 GSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNN-KVVGNFPICSNNNFAGKLPRNMGIVL-QK 166 (551)
Q Consensus 90 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~l~~~~~~~l-~~ 166 (551)
++.+..++++.|..+++|++|++++|++..+|. .+....++..+++.++ .+. .++...+..+ ..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-------------~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-------------TIERNSFVGLSFE 155 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-------------EECTTSSTTSBSS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-------------cccccchhhcchh
Confidence 444666777788889999999999999877764 4445556777777653 444 3443333323 24
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcC-CccceeCChhhhhCCCCCCEEECcCCcccccCCcccC
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSR-NNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM 235 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 235 (551)
++.|++++|.++.+.+..| ...+|+.+++++ |.+. .+|.++|.++++|++|++++|+++...+..|.
T Consensus 156 l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp CEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred hhhhccccccccCCChhhc-cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence 6666677666665444433 344566666654 3343 66666666666666666666666654444433
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.1e-21 Score=187.69 Aligned_cols=193 Identities=18% Similarity=0.204 Sum_probs=103.2
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCcc
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLK 108 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 108 (551)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKN-VS--AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCC-ch--hhcCCCCCC
Confidence 44555555555555552 22 35555555555555555443221 4444445555544444222 11 345566666
Q ss_pred EEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccC
Q 046908 109 VLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188 (551)
Q Consensus 109 ~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 188 (551)
+|++++|.++.++. +..+++|++|++++|.++ .++. +..+++|+.|++++|.+.+..+ +..+
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------------~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l 172 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-------------NISP--LAGLTNLQYLSIGNAQVSDLTP--LANL 172 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-------------CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccC-------------cCcc--ccCCCCccEEEccCCcCCCChh--hcCC
Confidence 66666666655553 566666666666666665 2222 2235556666666665554322 5566
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccC
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSG 252 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 252 (551)
++|+.|++++|++. .++. +..+++|++|++++|++.+.. .+..+++|+.|++++|++++
T Consensus 173 ~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 173 SKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 66666666666665 3333 344566666666666665443 25556666666666665543
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.7e-21 Score=188.22 Aligned_cols=194 Identities=21% Similarity=0.285 Sum_probs=112.5
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
..++++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. .+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-------~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-------AIA 104 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-------GGT
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-------hhc
Confidence 345666777777777665 4542 3456677777777776665443 666777777777777665421 256
Q ss_pred cCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
.+++|++|++++|.+++..+ ...+++|++|++++|.++ .++. +..+++|+.|++++|.+++ ++.
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------~~~~-l~~l~~L~~L~l~~n~l~~-~~~------ 168 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-------NISP-LAGLTNLQYLSIGNAQVSD-LTP------ 168 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-------CCGG-GGGCTTCCEEECCSSCCCC-CGG------
T ss_pred CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccC-------cCcc-ccCCCCccEEEccCCcCCC-Chh------
Confidence 66667777777666665432 115566666666666554 2222 5556666666666666552 111
Q ss_pred chhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 169 ------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 ------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred ------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 2445556666666666553222 5556666666666666654432 555666666666666665
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.5e-20 Score=176.29 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=79.6
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
.++.|++++|.+.+..+..|.++++|+.|++++|++. .++...+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 3444444444444444444445555555555555554 333333444555555555555555444444555555555555
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCce
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHV 324 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~ 324 (551)
++|.+++..+.. |..+++|++|++++|.+++..+..+ .+++|++|++++|.++. ..+..+..+++|+.
T Consensus 115 ~~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 115 GGNQLKSLPSGV-----FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS------VPHGAFDRLGKLQT 183 (251)
T ss_dssp CSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCE
T ss_pred CCCcCCCcChhH-----hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc------cCHHHHhCCCCCCE
Confidence 555555433322 4455555555555555555554444 45555555555555541 22234555666666
Q ss_pred EEecCCcccc
Q 046908 325 LLLRGNSLQG 334 (551)
Q Consensus 325 L~l~~n~l~~ 334 (551)
|++++|++..
T Consensus 184 L~l~~N~~~c 193 (251)
T 3m19_A 184 ITLFGNQFDC 193 (251)
T ss_dssp EECCSCCBCT
T ss_pred EEeeCCceeC
Confidence 6666666653
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=3.9e-20 Score=169.37 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=126.6
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccC-ccccccCCCceEEecCCcccccCChhhhhhhchhh
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 348 (551)
+.++.+++.++.++... .+++++|++++|.|+ .++ ..+..+++|++|++++|++++..|..
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~-------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~--------- 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIK-------VIPPGAFSPYKKLRRIDLSNNQISELAPDA--------- 75 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCC-------EECTTSSTTCTTCCEEECCSSCCCEECTTT---------
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCC-------CcCHhHhhCCCCCCEEECCCCcCCCcCHHH---------
Confidence 57888888888776543 368899999999887 444 46788889999999999888665655
Q ss_pred HhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCC
Q 046908 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428 (551)
Q Consensus 349 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 428 (551)
|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++
T Consensus 76 --~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 76 --FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp --TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred --hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence 467788899999999988666666788899999999999998888888888999999999999998777778888888
Q ss_pred CCeEECCCCccccCCC
Q 046908 429 LSNFNVSYNNLSGPTP 444 (551)
Q Consensus 429 L~~l~l~~N~l~~~~~ 444 (551)
|++|++++|++.+.+.
T Consensus 154 L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 154 IQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCEEECCSSCEECSGG
T ss_pred CCEEEeCCCCcCCCCc
Confidence 9999999998887664
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=164.56 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=81.1
Q ss_pred cEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccccc
Q 046908 108 KVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGE 187 (551)
Q Consensus 108 ~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (551)
+.++.+++.+..+|..+ .+++++|++++|.++ .++...+..+++|++|++++|.+.+..+..|..
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLK-------------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC-------------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccC-------------cCChhhhcccccCcEEECCCCccCccChhhcCC
Confidence 34555555555555332 234555555555554 333333333455555555555555444444455
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+++|++|++++|++. .++...+..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+.. +..++
T Consensus 75 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~l~ 148 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV-----FDRLT 148 (208)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-----TTTCT
T ss_pred CCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH-----hccCC
Confidence 555555555555554 444444444555555555555555444444455555555555555554433222 44445
Q ss_pred CCCEEECCCCcccccCCCcccccccceeeccccccc
Q 046908 268 SLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAIT 303 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 303 (551)
+|++|++++|.+.+ .+++|++|++..|.++
T Consensus 149 ~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp TCCEEECCSCCBCC------CTTTTHHHHHHHHHCT
T ss_pred CccEEEecCCCeec------CCCCHHHHHHHHHhCC
Confidence 55555555554332 2334444444444433
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=167.97 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=127.1
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceecc-C-ccccccCCCceEEecCCcccccCChhhhhhhchh
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRI-P-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 347 (551)
+.+++++|.++.++... .+.+++|++++|.++ .+ + ..+..+++|++|++++|.+++..+..
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~-------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-------- 76 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFT-------VLEATGIFKKLPQLRKINFSNNKITDIEEGA-------- 76 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC-------EECCCCCGGGCTTCCEEECCSSCCCEECTTT--------
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCC-------ccCchhhhccCCCCCEEECCCCcCCEECHHH--------
Confidence 36677777766654432 345677778877776 33 2 34677888888888888888554433
Q ss_pred hHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCC
Q 046908 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLN 427 (551)
Q Consensus 348 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 427 (551)
|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|+.|++++|++++..|..|..++
T Consensus 77 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 77 ---FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp ---TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred ---hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 47788899999999999877788899999999999999999988899999999999999999999988899999999
Q ss_pred CCCeEECCCCccccCCCC
Q 046908 428 FLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 428 ~L~~l~l~~N~l~~~~~~ 445 (551)
+|++|++++|++.|.++-
T Consensus 154 ~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 154 SLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TCCEEECCSCCEECSGGG
T ss_pred CCCEEEecCcCCcCCCch
Confidence 999999999999988764
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=9.2e-20 Score=165.67 Aligned_cols=157 Identities=22% Similarity=0.287 Sum_probs=95.9
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
+++++|++++|.+.+..+..|..+++|++|++++|++. .++...+..+++|++|++++|++++..+..|..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46777777777776665556666777777777777776 56665556666777777777766665555566666666666
Q ss_pred cccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCc
Q 046908 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLH 323 (551)
Q Consensus 245 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~ 323 (551)
+++|.+++..+.. +..+++|++|++++|.+++..+..+ .+++|++|++++|.+. +.+++|+
T Consensus 107 L~~N~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~ 168 (208)
T 2o6s_A 107 LNTNQLQSLPDGV-----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIR 168 (208)
T ss_dssp CCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------------CCTTTTH
T ss_pred cCCCcCcccCHhH-----hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------------cCCCCHH
Confidence 6666666543332 5566666666666666665555444 4555666666555433 1234555
Q ss_pred eEEecCCcccccCChhh
Q 046908 324 VLLLRGNSLQGHIPNEL 340 (551)
Q Consensus 324 ~L~l~~n~l~~~~p~~~ 340 (551)
+|+++.|+++|.+|..+
T Consensus 169 ~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 169 YLSEWINKHSGVVRNSA 185 (208)
T ss_dssp HHHHHHHHCTTTBBCTT
T ss_pred HHHHHHHhCCceeeccC
Confidence 55555555555555443
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=164.69 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=140.7
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.+++++|.++ .+|..+. +.+++|++++|.+++..|... |..+++|+.|+|++|.+++..+
T Consensus 14 ~~l~~s~n~l~-------~iP~~~~--~~~~~L~L~~N~l~~~~~~~~----------~~~l~~L~~L~L~~N~i~~i~~ 74 (220)
T 2v70_A 14 TTVDCSNQKLN-------KIPEHIP--QYTAELRLNNNEFTVLEATGI----------FKKLPQLRKINFSNNKITDIEE 74 (220)
T ss_dssp TEEECCSSCCS-------SCCSCCC--TTCSEEECCSSCCCEECCCCC----------GGGCTTCCEEECCSSCCCEECT
T ss_pred CEeEeCCCCcc-------cCccCCC--CCCCEEEcCCCcCCccCchhh----------hccCCCCCEEECCCCcCCEECH
Confidence 58999999987 6777654 467899999999996655432 5788999999999999998888
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFAT 451 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~ 451 (551)
..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..|. ...+..
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT
T ss_pred HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC
Confidence 8999999999999999999988888899999999999999999999899999999999999999999998775 566788
Q ss_pred cCCcccCCCCCCCCcccc
Q 046908 452 FDESSYTGNHELCGSLIR 469 (551)
Q Consensus 452 ~~~~~~~~n~~~c~~~~~ 469 (551)
+..+++.+|++.|+|+..
T Consensus 155 L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 155 LSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CCEEECCSCCEECSGGGH
T ss_pred CCEEEecCcCCcCCCchH
Confidence 999999999999999753
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.6e-19 Score=165.34 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=113.2
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+.. |..+++|+.|+|++|.+++..|
T Consensus 14 ~~v~c~~~~l~-------~iP~~l~--~~l~~L~l~~n~i~~i~~~~-----------~~~l~~L~~L~Ls~N~i~~~~~ 73 (220)
T 2v9t_B 14 NIVDCRGKGLT-------EIPTNLP--ETITEIRLEQNTIKVIPPGA-----------FSPYKKLRRIDLSNNQISELAP 73 (220)
T ss_dssp TEEECTTSCCS-------SCCSSCC--TTCCEEECCSSCCCEECTTS-----------STTCTTCCEEECCSSCCCEECT
T ss_pred CEEEcCCCCcC-------cCCCccC--cCCCEEECCCCcCCCcCHhH-----------hhCCCCCCEEECCCCcCCCcCH
Confidence 45667777666 5665543 57778888888777433333 4666777888888888777677
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFAT 451 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~ 451 (551)
..|.++++|++|+|++|+++...+..|.++++|+.|++++|++++..|..|..+++|++|++++|++++..+. ...+..
T Consensus 74 ~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence 7777788888888888888766666677778888888888888777777777778888888888887776664 445666
Q ss_pred cCCcccCCCCCCCCccc
Q 046908 452 FDESSYTGNHELCGSLI 468 (551)
Q Consensus 452 ~~~~~~~~n~~~c~~~~ 468 (551)
+..+++.+||+.|+|.+
T Consensus 154 L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 154 IQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCEEECCSSCEECSGGG
T ss_pred CCEEEeCCCCcCCCCcc
Confidence 77777788888887764
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.6e-19 Score=183.72 Aligned_cols=188 Identities=26% Similarity=0.333 Sum_probs=121.1
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
+|+.|++++|+++.+|..+. ++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-------------~ip----~~l~~L~~L~Ls~N~l~~-ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-------------SLP----ELPASLEYLDACDNRLST-LPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-------------CCC----CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-------------ccc----cccCCCCEEEccCCCCCC-cch-h
Confidence 56666666666666665442 56667777766665 344 124567777777776665 444 4
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.+ +|+.|++++|+++ .+|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++++. +.
T Consensus 119 ~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-------l~- 179 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-------LP- 179 (571)
T ss_dssp CT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-------CC-
T ss_pred hc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-------hh-
Confidence 43 6777777777776 3665 36677777777777765 333 45677777777777765322 22
Q ss_pred CCCCCEEECCCCcccccCCCccccccc-------ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCCh
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSV-------KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 338 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 338 (551)
++|+.|++++|.++..+. +. .+| ++|+|++|.|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 180 -~~L~~L~Ls~N~L~~lp~--~~-~~L~~~~~~L~~L~Ls~N~l~-------~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA--VP-VRNHHSEETEIFFRCRENRIT-------HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC--CC---------CCEEEECCSSCCC-------CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -CCCCEEECcCCCCCchhh--HH-HhhhcccccceEEecCCCcce-------ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 677777777777775444 31 155 88888888777 6777777788888888888888877777
Q ss_pred hhhhhh
Q 046908 339 ELCHVS 344 (551)
Q Consensus 339 ~~~~~~ 344 (551)
.+..+.
T Consensus 249 ~l~~l~ 254 (571)
T 3cvr_A 249 SLSQQT 254 (571)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 665443
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.1e-19 Score=177.87 Aligned_cols=179 Identities=22% Similarity=0.166 Sum_probs=123.4
Q ss_pred CEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cccccceeeccccccccCccceeccCccccc
Q 046908 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQINE 318 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 318 (551)
+.++.+++.++.++.. + .+.++.|++++|.+++..+..+ .+++|++|+|++|.|+. ..+..|..
T Consensus 21 ~~l~c~~~~l~~iP~~------~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~------i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS------L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF------ISSEAFVP 86 (361)
T ss_dssp TEEECCSSCCSSCCSS------C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE------ECTTTTTT
T ss_pred CEEEeCCCCcCccCcc------C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc------cChhhccC
Confidence 5788888877754331 1 2457888888888888777666 67888888888887761 22345777
Q ss_pred cCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccc
Q 046908 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES 398 (551)
Q Consensus 319 l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 398 (551)
+++|++|++++|+++...+.. |.++++|+.|+|++|.+++..+..|.++++|++|+|++|++++..+..
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFL-----------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTT-----------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CCCCCEEECCCCcCCcCCHHH-----------hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 788888888888877433322 466777788888888877666777777788888888888887655555
Q ss_pred c---cCCCCCCEEeCCCCcCcccCCCCCCCCCC--CCeEECCCCccccCCC
Q 046908 399 F---SNLKMTESLDLSHNRLSGHIPPQLTGLNF--LSNFNVSYNNLSGPTP 444 (551)
Q Consensus 399 ~---~~l~~L~~L~l~~n~l~~~~p~~~~~l~~--L~~l~l~~N~l~~~~~ 444 (551)
| ..+++|+.|+|++|+++...+..+..++. ++.|++++|++.|.+.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 5 45777888888888777544455555555 3677777777776553
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.2e-18 Score=180.56 Aligned_cols=178 Identities=26% Similarity=0.376 Sum_probs=97.5
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
+|+.|+|++|++++ +|..+ .++|++|+|++|.++ .+| ..+++|++|++++|.+.+ ++. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--------- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--------- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT---------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc---------
Confidence 66777777776664 44433 266777777777666 444 345666666666666654 332 222
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCc
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L 167 (551)
+|++|++++|.++.+|. .+++|++|++++|.++ .+|. .+++|
T Consensus 121 ------------------~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-------------~lp~----~l~~L 162 (571)
T 3cvr_A 121 ------------------SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLT-------------MLPE----LPTSL 162 (571)
T ss_dssp ------------------TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-------------CCCC----CCTTC
T ss_pred ------------------CCCEEECCCCcCCCCCC---cCccccEEeCCCCccC-------------cCCC----cCCCc
Confidence 45555555555544544 3455555555555554 2332 14455
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCC-------CEEECcCCcccccCCcccCCCCCC
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVAL-------DLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
+.|++++|.+++ +|. +. ++|+.|++++|+++ .+|. + .. +| +.|++++|.++. +|..+..+++|
T Consensus 163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L 232 (571)
T 3cvr_A 163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V-PV--RNHHSEETEIFFRCRENRITH-IPENILSLDPT 232 (571)
T ss_dssp CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C-C----------CCEEEECCSSCCCC-CCGGGGGSCTT
T ss_pred CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H-HH--hhhcccccceEEecCCCccee-cCHHHhcCCCC
Confidence 555555555554 333 33 55666666666665 5554 2 11 44 666666666653 34444456666
Q ss_pred CEEecccccccC
Q 046908 241 HWLYLDNNHFSG 252 (551)
Q Consensus 241 ~~L~L~~n~l~~ 252 (551)
+.|++++|.+++
T Consensus 233 ~~L~L~~N~l~~ 244 (571)
T 3cvr_A 233 CTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSSCCH
T ss_pred CEEEeeCCcCCC
Confidence 666666666665
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.2e-18 Score=166.74 Aligned_cols=169 Identities=24% Similarity=0.316 Sum_probs=87.0
Q ss_pred CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccc
Q 046908 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSV 292 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 292 (551)
+++|+.|++++|.+... ..+..+++|++|++++|.+++.. . +..+++|++|++++|.+++... ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~------~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK------P-LANLKNLGWLFLDENKVKDLSS-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG------G-GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCc------c-cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 55677777777766543 23556666666666666665421 1 5566666666666666554321 1145555
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
++|++++|.++ .+ ..+..+++|+.|++++|++ ++.
T Consensus 115 ~~L~L~~n~i~-------~~-~~l~~l~~L~~L~l~~n~l-----------------------------------~~~-- 149 (291)
T 1h6t_A 115 KSLSLEHNGIS-------DI-NGLVHLPQLESLYLGNNKI-----------------------------------TDI-- 149 (291)
T ss_dssp CEEECTTSCCC-------CC-GGGGGCTTCCEEECCSSCC-----------------------------------CCC--
T ss_pred CEEECCCCcCC-------CC-hhhcCCCCCCEEEccCCcC-----------------------------------Ccc--
Confidence 55555555544 11 2344444555555555544 422
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
..+..+++|++|++++|++++..+ +..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 344445555555555555543332 44555555555555555432 2 2444555555555555544
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.8e-18 Score=158.07 Aligned_cols=157 Identities=23% Similarity=0.267 Sum_probs=131.7
Q ss_pred CCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhh
Q 046908 269 LELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348 (551)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 348 (551)
-+.++.+++.++..+... .++|++|++++|.++. ..|..+..+++|++|++++|++. .+|...
T Consensus 21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~-------- 83 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQLG-ALPVGV-------- 83 (229)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCC-CCCTTT--------
T ss_pred CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCCCC-CcChhh--------
Confidence 567899998888777654 4889999999998873 44667888999999999999997 444332
Q ss_pred HhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCC
Q 046908 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428 (551)
Q Consensus 349 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 428 (551)
|..+++|+.|+|++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++
T Consensus 84 --~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 84 --FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp --TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred --cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 577889999999999999777777889999999999999998 66778889999999999999999777778899999
Q ss_pred CCeEECCCCccccCCCC
Q 046908 429 LSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 429 L~~l~l~~N~l~~~~~~ 445 (551)
|+.|++++|++.|.++.
T Consensus 161 L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 161 LTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCEEECTTSCBCTTBGG
T ss_pred CCEEEeeCCCccCCcch
Confidence 99999999999887763
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=1.3e-18 Score=169.96 Aligned_cols=260 Identities=15% Similarity=0.087 Sum_probs=162.3
Q ss_pred CCCCCEEECcCCCCc--ccCCccCCCCCCCCEEEcccCcCccccchhccC--------CCCCCEeeCCCCccccccChhh
Q 046908 6 LKNLFELDLSSNNFE--GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTN--------LTSLEYLDRFSINFQGTISINS 75 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~ 75 (551)
+++|++|||++|+|. ...+..+ +.++.+.+..|. +.+.+|.+ +++|++|++.+ ++. .++..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence 788999999999988 2222222 224555555553 33455666 88888888776 555 566677
Q ss_pred hcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCC----CCCc-hhhhCCCCCC-EEEccCCcccccCCCCCC
Q 046908 76 LANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL----HVIP-SFLLQHYHLI-FLDLSNNKVVGNFPICSN 149 (551)
Q Consensus 76 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l----~~l~-~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~ 149 (551)
|.+|++|+.++++.|... .++..+|..+.++..+....... ..+. ..+..+..|+ .+.+....
T Consensus 120 F~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---------- 188 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---------- 188 (329)
T ss_dssp TTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC----------
T ss_pred hhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC----------
Confidence 888888888888766533 56666777777777666655221 1221 2344555555 34433221
Q ss_pred CcccccCChhHhhh---cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcc
Q 046908 150 NNFAGKLPRNMGIV---LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226 (551)
Q Consensus 150 ~~~~~~l~~~~~~~---l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 226 (551)
.++..++.. ..++..+.+.++-...........+++|+.+++++|+++ .++..+|.++.+|+.+++.+| +
T Consensus 189 -----~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 189 -----KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp -----CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-C
T ss_pred -----cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-c
Confidence 233333322 345555555544222111111123677777777777776 777777777777888887776 6
Q ss_pred cccCCcccCCCCCCC-EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeec
Q 046908 227 FGQIFPKYMNLTHLH-WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYL 297 (551)
Q Consensus 227 ~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L 297 (551)
..+...+|.++++|+ .+++.+ .++.+.+.+ |.++++|+.++++.|.++.+...+| ++++|+.++.
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a-----F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA-----FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCCEECTTT-----TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceehHHHhhCChhccEEEEEcc-cceEEchhh-----hhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 667777777787787 777776 566555544 7778888888877777777777777 7777777753
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=1.5e-18 Score=155.30 Aligned_cols=155 Identities=23% Similarity=0.320 Sum_probs=120.0
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.+++++|.++ .+|..+.. ++++|++++|.+.+..+..+ |..+++|++|+|++|.+++..|
T Consensus 11 ~~l~~s~~~l~-------~ip~~~~~--~l~~L~l~~n~i~~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRGLK-------EIPRDIPL--HTTELLLNDNELGRISSDGL----------FGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSCCS-------SCCSCCCT--TCSEEECCSCCCCSBCCSCS----------GGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEcCCCCcC-------cCccCCCC--CCCEEECCCCcCCccCCccc----------cccCCCCCEEECCCCCCCCcCH
Confidence 56777777766 56665433 78888888888875444322 4677888999999999998888
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCcc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 452 (551)
..|.++++|++|+|++|++++..+..|.++++|+.|++++|++++..|..|..+++|++|++++|++.|.++.......+
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l 151 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHH
Confidence 89999999999999999999888888999999999999999999988999999999999999999999887643222223
Q ss_pred CCcccCCCCCCCCc
Q 046908 453 DESSYTGNHELCGS 466 (551)
Q Consensus 453 ~~~~~~~n~~~c~~ 466 (551)
....+.++...|..
T Consensus 152 ~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 152 RKKSLNGGAARCGA 165 (192)
T ss_dssp HHHCCSGGGCBBCS
T ss_pred HHcCCCCCCCCCCC
Confidence 33334444444543
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.7e-18 Score=171.36 Aligned_cols=180 Identities=24% Similarity=0.266 Sum_probs=130.5
Q ss_pred ccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhh-hcCCccEEEccCCcccccCCccc
Q 046908 107 LKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI-VLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 107 L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
-+.++++++++..+|..+. ..++.|+|++|.++ .++...+. .+++|+.|++++|.+.+..+..|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~-------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLS-------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCC-------------EECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCC-------------ccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence 3578888888888886543 35788888888887 45555443 57788888888888887777788
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
..+++|+.|+|++|++. .++...|.++++|+.|+|++|++....+..|.++++|+.|+|++|.++..+... ...+..
T Consensus 85 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~~~~ 161 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--IKDGNK 161 (361)
T ss_dssp TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG--TC----
T ss_pred cCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH--hcCccc
Confidence 88888888888888887 677777777888888888888888877788888888888888888887644321 111256
Q ss_pred CCCCCEEECCCCcccccCCCcc-cccc--cceeecccccccc
Q 046908 266 LKSLELIDIFENSLSGSLVSSF-NLSS--VKHLYLQKNAITG 304 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~-~~~~--L~~L~L~~n~l~~ 304 (551)
+++|+.|++++|.++......+ .++. ++.|++.+|.+..
T Consensus 162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 7788888888887776665544 4554 3667777776654
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=7.4e-18 Score=155.25 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=84.9
Q ss_pred cceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccC
Q 046908 292 VKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371 (551)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~ 371 (551)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..|.. |.++++|+.|+|++|.++...
T Consensus 21 ~~~v~c~~~~l~-------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-----------~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 21 GTTVDCRSKRHA-------SVPAGIP--TNAQILYLHDNQITKLEPGV-----------FDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp TTEEECTTSCCS-------SCCSCCC--TTCSEEECCSSCCCCCCTTT-----------TTTCTTCCEEECCSSCCCCCC
T ss_pred CCEeEccCCCcC-------ccCCCCC--CCCCEEEcCCCccCccCHHH-----------hhCccCCcEEECCCCCCCCcC
Confidence 344555555554 4444332 55666666666655443433 244555566666666665444
Q ss_pred CccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCC
Q 046908 372 PREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFA 450 (551)
Q Consensus 372 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~ 450 (551)
+..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+. ...+.
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 444555666666666666665555555555666666666666665 4455555556666666666666554433 33445
Q ss_pred ccCCcccCCCCCCCCcc
Q 046908 451 TFDESSYTGNHELCGSL 467 (551)
Q Consensus 451 ~~~~~~~~~n~~~c~~~ 467 (551)
.+..+++.+||+.|+|+
T Consensus 160 ~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCCEEECTTSCBCTTBG
T ss_pred CCCEEEeeCCCccCCcc
Confidence 55555566666666553
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2.2e-18 Score=180.71 Aligned_cols=194 Identities=23% Similarity=0.319 Sum_probs=145.0
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+..+..+.++.+.+.+.++. ..++.|+.|++++|.+... ..+..+++|+.|+|++|.+.+..+ +..++
T Consensus 20 l~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~ 87 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-------LTNLK 87 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG-------GGGCT
T ss_pred HHHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh-------hccCC
Confidence 34455566777777644443 3477889999999988754 257888999999999998876432 78889
Q ss_pred CCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchh
Q 046908 268 SLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 347 (551)
+|+.|++++|.+.+.. ....+++|++|+|++|.++ .+ +.+..+++|+.|+|++|.+.+. ..
T Consensus 88 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-------~l-~~l~~l~~L~~L~Ls~N~l~~l--~~-------- 148 (605)
T 1m9s_A 88 NLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS-------DI-NGLVHLPQLESLYLGNNKITDI--TV-------- 148 (605)
T ss_dssp TCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC-------CC-GGGGGCTTCSEEECCSSCCCCC--GG--------
T ss_pred CCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC-------CC-ccccCCCccCEEECCCCccCCc--hh--------
Confidence 9999999999888753 2227888888888888876 33 3577788888888888888743 11
Q ss_pred hHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccC
Q 046908 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419 (551)
Q Consensus 348 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 419 (551)
+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+..
T Consensus 149 ---l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 149 ---LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ---GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred ---hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 4677888888888888886555 77888888888888888754 35778888888888888887543
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.8e-18 Score=163.27 Aligned_cols=172 Identities=22% Similarity=0.255 Sum_probs=108.6
Q ss_pred CCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCc
Q 046908 28 NNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQL 107 (551)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 107 (551)
..+++|+.|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD-LS--SLKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-GG--GGTTCTTC
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC-Ch--hhccCCCC
Confidence 3455555555555555522 2 25555555555555555553322 5555555555555554332 22 25666777
Q ss_pred cEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccccc
Q 046908 108 KVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGE 187 (551)
Q Consensus 108 ~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (551)
++|++++|.+..++ .+..+++|++|++++|.++ .+ . .+..+++|+.|++++|.+.+..+ +..
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-------------~~-~-~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-------------DI-T-VLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC-------------CC-G-GGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCC-------------cc-h-hhccCCCCCEEEccCCccccchh--hcC
Confidence 77777777776663 4667777777777777776 33 1 22336778888888887776544 777
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccc
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG 228 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 228 (551)
+++|+.|++++|++. .++. +..+++|+.|++++|.+..
T Consensus 177 l~~L~~L~L~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCC-CChh--hccCCCCCEEECcCCcccC
Confidence 888888888888887 5553 5668888888888888765
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=2.7e-18 Score=167.67 Aligned_cols=287 Identities=13% Similarity=0.079 Sum_probs=180.8
Q ss_pred CCCccEEEccCCCCCCCchhhhC-CCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 104 TSQLKVLKLSDCHLHVIPSFLLQ-HYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 104 l~~L~~L~l~~n~l~~l~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
+.+++.|.++++--..-...+.. +++|+.|||++|++.... ...+. ++.+..+.+..+. +.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~------~~~~~--------~~~~~~~~~~~~~---I~~ 86 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYS------GKAGT--------YPNGKFYIYMANF---VPA 86 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEE------ESSSS--------SGGGCCEEECTTE---ECT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEec------Ccccc--------ccccccccccccc---cCH
Confidence 34688888886422111123444 788889999888876100 00011 1223344444443 333
Q ss_pred ccccc--------CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccc----
Q 046908 183 YSIGE--------MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHF---- 250 (551)
Q Consensus 183 ~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---- 250 (551)
.+|.+ +++|+.+++.+ +++ .++..+|.+|++|+.+++++|.+..+.+.+|.++.++..+.+..+..
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 45666 88888888888 777 78888888888888888888888888888888877777776655321
Q ss_pred cCcCCCchhhHhhccCCCCC-EEECCCCccc-ccC-CCcccccccceeeccccccccCccceeccCccc-cccCCCceEE
Q 046908 251 SGKMDDANILVQLSQLKSLE-LIDIFENSLS-GSL-VSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLL 326 (551)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~-~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~l~~L~~L~ 326 (551)
...... .|..+..|+ .+.+....-. ... .......++..+.+.++-.. .-...+ ..+++|+.++
T Consensus 165 ~~i~~~-----~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-------~~~~~l~~~~~~L~~l~ 232 (329)
T 3sb4_A 165 NRWEHF-----AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-------ADFKLIRDYMPNLVSLD 232 (329)
T ss_dssp TTTTTS-----CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-------HHHHHHHHHCTTCCEEE
T ss_pred cccccc-----ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-------HHHHHHHHhcCCCeEEE
Confidence 111112 255666666 4444432211 100 00113455555555543111 001111 2377888888
Q ss_pred ecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCc-EEEcCCCCCCCcccccccCCCCC
Q 046908 327 LRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIR-ALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 327 l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
+++|+++ .+|.. .|.++++|+.+++.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++++|
T Consensus 233 L~~n~i~-~I~~~----------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 233 ISKTNAT-TIPDF----------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTBCCC-EECTT----------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred CCCCCcc-eecHh----------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 8888877 44443 2678888888888887 6656677788888888 888888 6776667788888888
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEEC
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNV 434 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 434 (551)
+.|++++|.++.+.+.+|.++++|+.++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88888888888777778888888887753
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=8.6e-18 Score=176.16 Aligned_cols=196 Identities=22% Similarity=0.303 Sum_probs=157.0
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
.+..+.+..+.+....+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 45566677777765443 567899999999999997 6663 5668999999999999987655 889999999999
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceE
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L 325 (551)
++|.+.+.. .+..+++|+.|++++|.+.+.. ....+++|+.|+|++|.++ .+ ..+..+++|+.|
T Consensus 95 s~N~l~~l~-------~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-------~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 95 DENKIKDLS-------SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-------DI-TVLSRLTKLDTL 158 (605)
T ss_dssp CSSCCCCCT-------TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC-------CC-GGGGSCTTCSEE
T ss_pred cCCCCCCCh-------hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC-------Cc-hhhcccCCCCEE
Confidence 999987642 3788999999999999998753 2238899999999999887 33 567889999999
Q ss_pred EecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccc
Q 046908 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399 (551)
Q Consensus 326 ~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 399 (551)
+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.....+
T Consensus 159 ~Ls~N~l~~~~~-------------l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 159 SLEDNQISDIVP-------------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp ECCSSCCCCCGG-------------GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred ECcCCcCCCchh-------------hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccc
Confidence 999999985443 36778899999999999854 468899999999999999886543333
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1e-20 Score=197.19 Aligned_cols=189 Identities=17% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccc------------cChhhhcCCCCCCEEE-cccCcccc
Q 046908 28 NNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT------------ISINSLANHSKLEVLL-ISSGSNML 94 (551)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~------------~~~~~~~~l~~L~~L~-l~~n~~~~ 94 (551)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|..... ..+..+..+++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~--- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY--- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH---
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc---
Confidence 67889999999999998 7899999999999999865532111 1112233333333333 22111
Q ss_pred cccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccC
Q 046908 95 QVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPK 174 (551)
Q Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~ 174 (551)
+.+|+.+.+++|.+..++. ..|+.|++++|.++ .+|. +..+++|+.|++++
T Consensus 422 ---------~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~-------------~lp~--~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 422 ---------LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLT-------------VLCH--LEQLLLVTHLDLSH 472 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCS-------------SCCC--GGGGTTCCEEECCS
T ss_pred ---------cchhhhhhhhcccccccCc-----cCceEEEecCCCCC-------------CCcC--ccccccCcEeecCc
Confidence 0112222223332222221 12455555555554 3332 22244555555555
Q ss_pred CcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccC-CcccCCCCCCCEEecccccccCc
Q 046908 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI-FPKYMNLTHLHWLYLDNNHFSGK 253 (551)
Q Consensus 175 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~ 253 (551)
|.+. .+|..+..+++|+.|++++|+++ .+| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+++.
T Consensus 473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 473 NRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cccc-ccchhhhcCCCCCEEECCCCCCC-CCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5554 34445555555555555555554 344 2334555555555555555443 44555555555555555555443
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.73 E-value=2.3e-16 Score=157.21 Aligned_cols=265 Identities=12% Similarity=0.106 Sum_probs=209.9
Q ss_pred CCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEE
Q 046908 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (551)
+..++.+.+.. +++.+...+|.++ +|+.+++..+ ++.+...+|.+. +|+.+.+.. ++. .+...+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 36677788755 4776777888885 7999999877 776778888884 799998875 444 5666789999999999
Q ss_pred EcccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhc
Q 046908 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164 (551)
Q Consensus 86 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l 164 (551)
++..|. ...++..+|. +.+|+.+.+..+ +..++. .|.++++|+.+++..+ ++ .++...|..
T Consensus 186 ~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-------------~I~~~aF~~- 247 (401)
T 4fdw_A 186 DLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-------------TIGQEAFRE- 247 (401)
T ss_dssp ECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-------------EECTTTTTT-
T ss_pred ecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-------------Ccccccccc-
Confidence 998765 5556777777 589999999854 776664 6778889999999875 44 666777765
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccc----eeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCC
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFS----GELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
.+|+.+.+. +.+..+...+|.++++|+.+++.++.+. ..++...|.+|++|+.+++.+ .+..+...+|.+|++|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 689999994 4566677889999999999999887653 248888999999999999994 5887888999999999
Q ss_pred CEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cc-cccceeeccccccc
Q 046908 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NL-SSVKHLYLQKNAIT 303 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~-~~L~~L~L~~n~l~ 303 (551)
+.++|..+ ++.+...+ |.++ +|+.+++.+|.........| ++ ..++.|++..+.+.
T Consensus 326 ~~l~lp~~-l~~I~~~a-----F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSA-----FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEEEECTT-CCEECTTS-----SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEEECcc-ccEEcHHh-----CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 99999665 66655555 8999 99999999999888888877 66 47899999888654
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=149.97 Aligned_cols=151 Identities=20% Similarity=0.249 Sum_probs=89.3
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
+++|+.|++++|.++... ....+++|++|++++|.++ . +..+..+++|++|++++|.+++..|..+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-------~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l----- 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-------N-YNPISGLSNLERLRIMGKDVTSDKIPNL----- 108 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-------C-CGGGTTCTTCCEEEEECTTCBGGGSCCC-----
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-------c-chhhhcCCCCCEEEeECCccCcccChhh-----
Confidence 344444444444444322 1114455555555555443 1 2245556666666666666665444433
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCC-CCCcccccccCCCCCCEEeCCCCcCcccCCCCCC
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNF-LSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 424 (551)
..+++|+.|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|+.|++++|++++ ++ .+.
T Consensus 109 ------~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~ 178 (197)
T 4ezg_A 109 ------SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIE 178 (197)
T ss_dssp ------TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGG
T ss_pred ------cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-Hhc
Confidence 455666777777777766666667777777777777776 553 33 46677777777777777764 33 566
Q ss_pred CCCCCCeEECCCCccc
Q 046908 425 GLNFLSNFNVSYNNLS 440 (551)
Q Consensus 425 ~l~~L~~l~l~~N~l~ 440 (551)
.+++|++|++++|++.
T Consensus 179 ~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEEECBC---
T ss_pred cCCCCCEEEeeCcccC
Confidence 7777777777777764
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.1e-17 Score=157.57 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccccee
Q 046908 216 LDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHL 295 (551)
Q Consensus 216 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 295 (551)
+..++++++.+.+.. .+..+++|+.|++++|.++... .+..+++|++|++++|.+++..+
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~L~~N~i~~~~~----------- 80 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-------GMQFFTNLKELHLSHNQISDLSP----------- 80 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG-----------
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-------HHhhCCCCCEEECCCCccCCChh-----------
Confidence 444455555554332 3445555555555555554321 24455555555555555554433
Q ss_pred eccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccc
Q 046908 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI 375 (551)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 375 (551)
+..+++|++|++++|++++ +|.. .. ++|+.|++++|.+++ + ..+
T Consensus 81 --------------------l~~l~~L~~L~L~~N~l~~-l~~~------------~~-~~L~~L~L~~N~l~~-~-~~l 124 (263)
T 1xeu_A 81 --------------------LKDLTKLEELSVNRNRLKN-LNGI------------PS-ACLSRLFLDNNELRD-T-DSL 124 (263)
T ss_dssp --------------------GTTCSSCCEEECCSSCCSC-CTTC------------CC-SSCCEEECCSSCCSB-S-GGG
T ss_pred --------------------hccCCCCCEEECCCCccCC-cCcc------------cc-CcccEEEccCCccCC-C-hhh
Confidence 4444445555555554442 2211 11 445555555555553 2 235
Q ss_pred cCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccC
Q 046908 376 GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 376 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 442 (551)
..+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 5556666666666666543 2 455566666666666666544 4455566666666666665544
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=6e-16 Score=154.18 Aligned_cols=242 Identities=13% Similarity=0.093 Sum_probs=140.7
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCcc
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLK 108 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 108 (551)
.+..++.+.+.++ ++.+...+|.+. +|+.+.+..+ +. .++..+|.++ +|+.+.+.. ....+...+|..+++|+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCC
Confidence 3456666666654 444556666664 6777776544 33 4555566664 577776653 34556666677777777
Q ss_pred EEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccC
Q 046908 109 VLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188 (551)
Q Consensus 109 ~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 188 (551)
.+++.+|++..++...+.+.+|+.+.+..+ +. .++...|..+++|+.+++..+ +..+...+|.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-------------~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~- 247 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-------------EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE- 247 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CC-------------EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hh-------------eehhhHhhCCCCCCEEecCCC-ccCcccccccc-
Confidence 777777777666665555666777766633 44 555555555666666666653 34445555555
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccc-----ccCCcccCCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFF-----GQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
.+|+.+.+ .+.+. .++..+|.+|++|+.+++.+|.+. .+...+|.+|++|+.+++.+ .++.+...+ |
T Consensus 248 ~~L~~i~l-p~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a-----F 319 (401)
T 4fdw_A 248 SGITTVKL-PNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL-----L 319 (401)
T ss_dssp CCCSEEEE-ETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT-----T
T ss_pred CCccEEEe-CCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh-----h
Confidence 55666666 33444 566666666666666666655443 34455566666666666652 344444433 5
Q ss_pred ccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccc
Q 046908 264 SQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~ 303 (551)
.++.+|+.+.+..+ ++.+...+| ++ +|+.+++.+|.+.
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 66666666666433 444555555 45 5666666555443
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=145.01 Aligned_cols=131 Identities=26% Similarity=0.317 Sum_probs=109.9
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|.. |.++++|+.|+|++|.+++..+
T Consensus 13 ~~l~~~~~~l~-------~ip~~~~--~~l~~L~L~~n~i~-~ip~~-----------~~~l~~L~~L~Ls~N~i~~i~~ 71 (193)
T 2wfh_A 13 TVVRCSNKGLK-------VLPKGIP--RDVTELYLDGNQFT-LVPKE-----------LSNYKHLTLIDLSNNRISTLSN 71 (193)
T ss_dssp TEEECTTSCCS-------SCCSCCC--TTCCEEECCSSCCC-SCCGG-----------GGGCTTCCEEECCSSCCCCCCT
T ss_pred CEEEcCCCCCC-------cCCCCCC--CCCCEEECCCCcCc-hhHHH-----------hhcccCCCEEECCCCcCCEeCH
Confidence 67888888887 7776654 68999999999987 66654 4677888999999999987777
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..|.++++|++|+|++|++++..+..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++.|.+.
T Consensus 72 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 72 QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred hHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 888999999999999999998888889999999999999999987666778888999999999999887664
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=9.9e-17 Score=144.10 Aligned_cols=151 Identities=17% Similarity=0.280 Sum_probs=95.5
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456666666666666 333 4666777777777777654 333 34457777777777777776666677777777777
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCc-ccccCCCcccccccceeeccccccccCccceeccCccccccCCC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENS-LSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L 322 (551)
++++|.+++ ..+..+..+++|++|++++|. ++... ....+++|++|++++|.++ .++ .+..+++|
T Consensus 118 ~Ls~n~i~~-----~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-------~~~-~l~~l~~L 183 (197)
T 4ezg_A 118 DISHSAHDD-----SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-------DYR-GIEDFPKL 183 (197)
T ss_dssp ECCSSBCBG-----GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-------CCT-TGGGCSSC
T ss_pred EecCCccCc-----HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-------ChH-HhccCCCC
Confidence 777777765 345557777777777777776 44432 2226666777777776665 233 45566666
Q ss_pred ceEEecCCccc
Q 046908 323 HVLLLRGNSLQ 333 (551)
Q Consensus 323 ~~L~l~~n~l~ 333 (551)
+.|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 66666666654
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=145.92 Aligned_cols=131 Identities=24% Similarity=0.345 Sum_probs=111.0
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
+.+++++|.++ .+|..+ .++++.|++++|.++ .+|..|.++++|++|++++|+|++..+..|.++
T Consensus 13 ~~l~~~~~~l~-~ip~~~-------------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI-------------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCS-SCCSCC-------------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCC-cCCCCC-------------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 57888888887 667543 247889999999998 677889999999999999999998888889999
Q ss_pred CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCccc
Q 046908 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
++|++|++++|++++..|..|..+++|++|++++|+++...+. ...+..+..+++.+|||.|+|..
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 9999999999999988888899999999999999999877765 55677888889999999998864
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=5.8e-17 Score=144.85 Aligned_cols=178 Identities=21% Similarity=0.251 Sum_probs=121.1
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccCc--cccccCCCceEEecCCcccccCChhhhhhhchh
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPY--QINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 347 (551)
+.+++++|.++.++... .+++++|++++|.++ .++. .+..+++|++|++++|.+++..|..
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------- 73 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELG-------RISSDGLFGRLPHLVKLELKRNQLTGIEPNA-------- 73 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCC-------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTT--------
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCC-------ccCCccccccCCCCCEEECCCCCCCCcCHhH--------
Confidence 56667777665554432 236777777777776 3443 3777888888888888888666655
Q ss_pred hHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCC
Q 046908 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLN 427 (551)
Q Consensus 348 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 427 (551)
|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..|..|..+++|+.|++++|.+.+..+-.+ -..
T Consensus 74 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~ 149 (192)
T 1w8a_A 74 ---FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAE 149 (192)
T ss_dssp ---TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHH
T ss_pred ---cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHH
Confidence 4677888999999999988888888999999999999999998888889999999999999999886543110 001
Q ss_pred CCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccccC
Q 046908 428 FLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRK 470 (551)
Q Consensus 428 ~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~ 470 (551)
.++...+..+...+..|.. +....-.++..+.+.|..+...
T Consensus 150 ~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~ 190 (192)
T 1w8a_A 150 WLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSE 190 (192)
T ss_dssp HHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---
T ss_pred HHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCC
Confidence 2333344455555544432 2333334555666777654433
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=6.5e-17 Score=152.18 Aligned_cols=166 Identities=18% Similarity=0.239 Sum_probs=99.5
Q ss_pred CCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc
Q 046908 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 184 (551)
.++..++++++.+..++ .+..+++|++|++++|.++ .++ .+ ..+++|+.|++++|.+.+..+
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-------------~l~-~l-~~l~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-------------SLA-GM-QFFTNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-------------CCT-TG-GGCTTCCEEECCSSCCCCCGG--
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-------------cch-HH-hhCCCCCEEECCCCccCCChh--
Confidence 34555666666666665 4566666777777776665 343 12 235666666666666665433
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
+..+++|+.|++++|++. .++... . ++|+.|++++|++++. ..+..+++|+.|++++|.+++.. .+.
T Consensus 81 l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-------~l~ 147 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-------MLG 147 (263)
T ss_dssp GTTCSSCCEEECCSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-------GGG
T ss_pred hccCCCCCEEECCCCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-------HHc
Confidence 666667777777777666 444322 1 6666666666666553 24666666666666666665431 256
Q ss_pred cCCCCCEEECCCCcccccCCCcc-cccccceeeccccccc
Q 046908 265 QLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~ 303 (551)
.+++|+.|++++|.+++. ..+ .+++|+.|++++|.++
T Consensus 148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 666666666666666655 222 5666666666666554
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.8e-18 Score=178.75 Aligned_cols=109 Identities=28% Similarity=0.327 Sum_probs=94.4
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
.|+.|++++|.+++ +|. + ..+++|+.|+|++|.++ .+|..++++++|+.|+|++|++++ +| .+.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~-----------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-L-----------EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA 505 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-G-----------GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT
T ss_pred CceEEEecCCCCCC-CcC-c-----------cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC
Confidence 58899999999884 554 3 66788899999999998 788899999999999999999986 55 788
Q ss_pred CCCCCCEEeCCCCcCcccC-CCCCCCCCCCCeEECCCCccccCCCC
Q 046908 401 NLKMTESLDLSHNRLSGHI-PPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
++++|+.|+|++|++++.. |..+..+++|+.|++++|++++.++.
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999999999999776 88899999999999999999887765
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=2.5e-15 Score=150.48 Aligned_cols=332 Identities=12% Similarity=0.106 Sum_probs=205.3
Q ss_pred CcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccC
Q 046908 19 FEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKT 98 (551)
Q Consensus 19 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 98 (551)
++.+-..+|.++++|+.+.+..+ ++.+...+|.++++|+.+++..+ +. .++..+|.++.+|+.+.+..+ ...+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~--l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM--LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT--CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc--eeeecc
Confidence 44455566777777777777643 55566666777777777776533 22 445556667777766655422 334444
Q ss_pred CCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcc
Q 046908 99 ETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIF 177 (551)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~ 177 (551)
.+|..+..++...... ...+. ..+.++++|+.+.+.++. . .++...|..+++|+.+.+..+ +
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-------------~I~~~~F~~c~~L~~i~l~~~-~ 196 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-------------TLHNGLFSGCGKLKSIKLPRN-L 196 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-------------EECTTTTTTCTTCCBCCCCTT-C
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-------------eeccccccCCCCceEEEcCCC-c
Confidence 5565554333322221 12222 346666777777775442 2 455556666777777777665 4
Q ss_pred cccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCc
Q 046908 178 EGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDA 257 (551)
Q Consensus 178 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 257 (551)
......+|.++..|+.+.+..+.. .+....+ ...+|+.+.+... +..+...+|..+..++.+.+..+... +....
T Consensus 197 ~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~ 271 (394)
T 4fs7_A 197 KIIRDYCFAECILLENMEFPNSLY--YLGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSL 271 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTTCC--EECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCT
T ss_pred eEeCchhhccccccceeecCCCce--Eeehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccc
Confidence 445566777777777777765543 2333333 3567777777543 34455567778888888888765432 22222
Q ss_pred hhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceecc-CccccccCCCceEEecCCccccc
Q 046908 258 NILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI-PYQINELSNLHVLLLRGNSLQGH 335 (551)
Q Consensus 258 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 335 (551)
|..+..++.+....+.+. ...| ++.+|+.+.+.++ ++ .+ ..+|.+|.+|+.+++..+ ++ .
T Consensus 272 -----F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-------~I~~~aF~~c~~L~~i~lp~~-v~-~ 333 (394)
T 4fs7_A 272 -----FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-------FIGEEAFESCTSLVSIDLPYL-VE-E 333 (394)
T ss_dssp -----TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-------EECTTTTTTCTTCCEECCCTT-CC-E
T ss_pred -----cccccccceeccCceeec---cccccccccccccccccc-cc-------eechhhhcCCCCCCEEEeCCc-cc-E
Confidence 777778887777665432 2344 7788888888654 33 33 345778888888887543 33 2
Q ss_pred CChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEE
Q 046908 336 IPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408 (551)
Q Consensus 336 ~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 408 (551)
+...+|.++.+|+.+++..+ ++.....+|.+|++|+.+++..+ ++ ....+|.++++|+.+
T Consensus 334 ----------I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 334 ----------IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ----------ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ----------EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 22334788888999988776 66566778999999999998765 33 335678888888765
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=4e-15 Score=148.91 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=143.8
Q ss_pred CCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhh
Q 046908 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANIL 260 (551)
Q Consensus 181 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 260 (551)
...+|.++.+|+.+.+.++. . .++..+|.++.+|+.+++..+ +..+...+|.++..|+.+.+..+.... .
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i-------~ 223 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL-------G 223 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE-------C
T ss_pred chhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe-------e
Confidence 34567777777777776543 3 567777777777777777665 445556677777777777766543321 1
Q ss_pred HhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChh
Q 046908 261 VQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339 (551)
Q Consensus 261 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 339 (551)
..+....+|+.+.+... ++.....+| ++..++.+.+..+... .....|..+..++.+....+.+ +.
T Consensus 224 ~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-------i~~~~F~~~~~l~~~~~~~~~i----~~- 290 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-------IGGSLFYNCSGLKKVIYGSVIV----PE- 290 (394)
T ss_dssp TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-------ECSCTTTTCTTCCEEEECSSEE----CT-
T ss_pred hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-------eeccccccccccceeccCceee----cc-
Confidence 11334466777766543 344444455 6777777777665432 2234566777777777655432 22
Q ss_pred hhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccC
Q 046908 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419 (551)
Q Consensus 340 ~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 419 (551)
..|.++.+|+.+.+..+ +......+|.++++|+.+++..+ ++.+...+|.++.+|+.+++..+ ++.+.
T Consensus 291 ---------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 291 ---------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp ---------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ---------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 12677778888877654 44455667888888888888654 65555677888888888888776 66566
Q ss_pred CCCCCCCCCCCeEECCCC
Q 046908 420 PPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 420 p~~~~~l~~L~~l~l~~N 437 (551)
..+|.++++|+.+++..+
T Consensus 359 ~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG
T ss_pred HHHhhCCCCCCEEEECCC
Confidence 678888888888887543
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=3.1e-17 Score=176.32 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=107.5
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCc-----EEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCC
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELY-----MQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT 238 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~-----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 238 (551)
.+.+..|++.+|.+... +..+.....|. .++++.|++. ++...+..+..|+.|+|++|.+.. ++..+..++
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCC
T ss_pred CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCC-CChhhcCCC
Confidence 35678888888887753 32222222222 2233334332 455566778889999999998874 455555888
Q ss_pred CCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCcccc
Q 046908 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQIN 317 (551)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 317 (551)
+|++|+|++|.++ .+|..+..+++|++|+|++|.++.+ |..+ .+++|++|+|++|.|+ .+|..++
T Consensus 248 ~L~~L~Ls~N~l~------~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~-------~lp~~~~ 313 (727)
T 4b8c_D 248 FLTRLYLNGNSLT------ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVT-------TLPWEFG 313 (727)
T ss_dssp SCSCCBCTTSCCS------CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCC-------CCCSSTT
T ss_pred CCCEEEeeCCcCc------ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCC-------ccChhhh
Confidence 8999999999887 3344588888999999999988855 4445 8888999999998887 7788888
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCC--------
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNN-------- 389 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-------- 389 (551)
.+++|+.|+|++|++++.+|..+..... ....++|++|.+++.+|.. |+.|+++.|
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~----------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~ 377 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFLKILTEKSV----------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYD 377 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHHHHHHHHHH----------HHHHHHHHHCCCCCCCCCC-----------------------
T ss_pred cCCCccEEeCCCCccCCCChHHHhhcch----------hhhHHhhccCcccCcCccc------cceeEeecccccccccC
Confidence 8889999999999988777776533211 1224678888888777753 555666666
Q ss_pred CCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 390 FLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 390 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
.+.+..+..+..+..++...+++|-+.
T Consensus 378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 378 SLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------CCC
T ss_pred Cccccccchhhcccccceeeeeccccc
Confidence 333333344445555566666666554
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1e-16 Score=172.25 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=83.6
Q ss_pred CCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhh
Q 046908 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANIL 260 (551)
Q Consensus 181 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 260 (551)
.+..+..++.|+.|+|++|++. .+|..++ .+++|++|+|++|.++ .+|..|..+++|++|+|++|.++. +|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~------lp 286 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS------LP 286 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS------CC
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc------cC
Confidence 3555666667777777777766 6666655 4666777777777666 455666667777777777776662 22
Q ss_pred HhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccC-CCceEEecCCcccccCChh
Q 046908 261 VQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELS-NLHVLLLRGNSLQGHIPNE 339 (551)
Q Consensus 261 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~ 339 (551)
..+..+++|++|+|++|.++.++.....+++|++|+|++|.+++ .+|..+..+. .+..+++++|.+++.+|..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK------QFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC------CChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 33666667777777777666544332266677777777776652 4444443321 1223566666666665554
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2e-15 Score=133.07 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=106.6
Q ss_pred cceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccC
Q 046908 292 VKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371 (551)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~ 371 (551)
.+.++++++.++ .+|..+. ++|++|++++|++++..+.. |..+++|++|++++|.+++..
T Consensus 9 ~~~l~~~~~~l~-------~~p~~~~--~~l~~L~l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 9 GTEIRCNSKGLT-------SVPTGIP--SSATRLELESNKLQSLPHGV-----------FDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TTEEECCSSCCS-------SCCTTCC--TTCSEEECCSSCCCCCCTTT-----------TTTCTTCSEEECCSSCCCCCC
T ss_pred CCEEEecCCCCc-------cCCCCCC--CCCcEEEeCCCcccEeCHHH-----------hcCcccccEEECCCCcceEeC
Confidence 356667777665 5554432 67888888888887433332 467788899999999888666
Q ss_pred CccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 372 PREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 372 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++.+.++.
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 67788999999999999999987777888999999999999999976666778899999999999999887763
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2e-15 Score=131.80 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCCCEEECCCCccc-ccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhh
Q 046908 267 KSLELIDIFENSLS-GSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 267 ~~L~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
++|+.|++++|.++ +..+..+ .+++|++|++++|.++ .+ ..+..+++|++|++++|.+++.+|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----- 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-------SV-SNLPKLPKLKKLELSENRIFGGLDML----- 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-------CC-SSCCCCSSCCEEEEESCCCCSCCCHH-----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-------Ch-hhhccCCCCCEEECcCCcCchHHHHH-----
Confidence 55666666666655 2333333 5555555555555554 22 33444555555555555555333322
Q ss_pred chhhHhhhccccCceEecCCCcCcccC-CccccCCCCCcEEEcCCCCCCCccc---ccccCCCCCCEEeCCCCcCc
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEI-PREIGQLQNIRALNLSNNFLSGAIP---ESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 416 (551)
+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 91 ------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 ------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 133444455555555444221 1344444455555555554443332 23444444444444444444
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.7e-16 Score=134.49 Aligned_cols=134 Identities=20% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCCCCCEEECcCCCCc-ccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 5 NLKNLFELDLSSNNFE-GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
..++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCC
Confidence 4577888888888887 56777788888888888888888855 678888888888888888776443 3344566666
Q ss_pred EEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch----hhhCCCCCCEEEccCCccc
Q 046908 84 VLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS----FLLQHYHLIFLDLSNNKVV 141 (551)
Q Consensus 84 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~~~L~~L~Ls~n~l~ 141 (551)
+|++++|.+........+..+++|++|++++|.+..+|. .+..+++|++|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666654332222345555566666666665555443 4555555555555555544
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.6e-15 Score=128.21 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCCCCCEEECcCCCCc-ccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 5 NLKNLFELDLSSNNFE-GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
..++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence 4577889999999887 67777888889999999999988855 678888888888888888875433 3344455555
Q ss_pred EEEcccCcccccccCCCccCCCCccEEEccCCCC
Q 046908 84 VLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL 117 (551)
Q Consensus 84 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 117 (551)
+|++++|.+........+..+++|++|++++|.+
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 5555544432211112233344444444444444
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.59 E-value=1.3e-13 Score=137.91 Aligned_cols=314 Identities=15% Similarity=0.173 Sum_probs=205.7
Q ss_pred CCCCCC-CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCc---CccccchhccCCCCCCEeeCCCCccccccChhhhc
Q 046908 2 GICNLK-NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQ---LSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLA 77 (551)
Q Consensus 2 ~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 77 (551)
||.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ +. .+...+|.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhh
Confidence 567774 5899998754 776778889999999999998764 66677788999999998876543 33 45667788
Q ss_pred CCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCC
Q 046908 78 NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLP 157 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~ 157 (551)
.+.+|+.+.+..+ ...+...+|..+.+|+.+.+.++ +..+....+....|+.+.+..+-. .+.
T Consensus 135 ~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--------------~i~ 197 (394)
T 4gt6_A 135 HCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--------------RIG 197 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--------------EEC
T ss_pred hhcccccccccce--eeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc--------------ccc
Confidence 9999999988543 45667778888999999988764 666666556667888888765432 233
Q ss_pred hhHhhhcCCccEEEccCCcccccCCcc-------------cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCC
Q 046908 158 RNMGIVLQKLIYLDMPKNIFEGDIPYS-------------IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNN 224 (551)
Q Consensus 158 ~~~~~~l~~L~~L~L~~n~~~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 224 (551)
...+..+..+................. +.....+..+.+. +.+. .+...+|.++..|+.+.+.++
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~-~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVA-RIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEE-EECTTTTTTCSSCCEEECCTT
T ss_pred cchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-Ccce-EcccceeeecccccEEecccc
Confidence 333444556666555443322111101 1122334444443 2333 566677888888888888765
Q ss_pred cccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccc
Q 046908 225 NFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 225 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~ 303 (551)
.. .+...+|.++++|+.+.+. +.++.+...+ |.++.+|+.+++..+ ++.+...+| ++.+|+++.+..+ ++
T Consensus 276 ~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~a-----F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~ 346 (394)
T 4gt6_A 276 VV-SIGTGAFMNCPALQDIEFS-SRITELPESV-----FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT 346 (394)
T ss_dssp CC-EECTTTTTTCTTCCEEECC-TTCCEECTTT-----TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC
T ss_pred cc-eecCcccccccccccccCC-CcccccCcee-----ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC
Confidence 43 4566778888888888886 4455555544 888888888888754 666777777 8888998888654 43
Q ss_pred cCccceeccC-ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcC
Q 046908 304 GDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNEL 367 (551)
Q Consensus 304 ~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l 367 (551)
.+. .+|.+|++|+.+++.++.... ..|..+.+|+.+.+..+.+
T Consensus 347 -------~I~~~aF~~C~~L~~i~~~~~~~~~--------------~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 347 -------KIPESAFSNCTALNNIEYSGSRSQW--------------NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -------BCCGGGGTTCTTCCEEEESSCHHHH--------------HTCBCCCCC----------
T ss_pred -------EEhHhHhhCCCCCCEEEECCceeeh--------------hhhhccCCCCEEEeCCCCE
Confidence 343 568888999999888875431 1245677788888776654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.3e-14 Score=127.79 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=116.4
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
..+.+++++|.++ .+|..+ .++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|.
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~-------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI-------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCCEEEecCCCCc-cCCCCC-------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc
Confidence 3578999999987 566432 36789999999999977777889999999999999999988778899
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 401 NLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
.+++|+.|++++|++++..+..+..+++|++|++++|++++..+. ...+..+..+++.+|++.|+|+
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999999999999987777889999999999999999977766 3567889999999999999886
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=8.8e-15 Score=124.93 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCccEEEccCCccc-ccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 165 QKLIYLDMPKNIFE-GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 165 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
++++.|++++|.+. +.+|..+..+++|+.|++++|++. .+ ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 445555555666666666666555 22 223445555555555555554444444445555555
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 283 (551)
++++|.+++. ..+..+..+++|++|++++|.+++..
T Consensus 94 ~ls~N~i~~~----~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 94 NLSGNKIKDL----STIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ECTTSCCCSH----HHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ECCCCcCCCh----HHHHHHhhCCCCCEEeCcCCcccchH
Confidence 5555554431 11233445555555555555544443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=4.7e-14 Score=123.05 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=97.0
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
..+.+++++|.++ .+|..+ .+.|+.|+|++|.+++..|..|.++++|++|+|++|+|++..+..|.
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~-------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI-------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCCEEEeCCCCcC-ccCccC-------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 3567888888887 566543 26788999999999988888999999999999999999988888899
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 401 NLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
++++|+.|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 999999999999999987777899999999999999999988764
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.3e-14 Score=127.53 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch--hhhCCCCCCEE
Q 046908 56 SLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS--FLLQHYHLIFL 133 (551)
Q Consensus 56 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L 133 (551)
+|++|++++|.+.+. ..+..+++|++|++++|.+. .+++..|..+++|++|++++|.++.+|. .+..+++|++|
T Consensus 43 ~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence 444444444444432 22444444444444444422 2333334556667777777777766665 66677777777
Q ss_pred EccCCcccccCCCCCCCcccccCChh---HhhhcCCccEEEccCCccc
Q 046908 134 DLSNNKVVGNFPICSNNNFAGKLPRN---MGIVLQKLIYLDMPKNIFE 178 (551)
Q Consensus 134 ~Ls~n~l~~~~~~~~~~~~~~~l~~~---~~~~l~~L~~L~L~~n~~~ 178 (551)
++++|.++ .+|.. ++..+++|+.|++++|...
T Consensus 119 ~l~~N~i~-------------~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 119 CILRNPVT-------------NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSSGGG-------------GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EecCCCCC-------------CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777776 44543 3445777777777777664
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.51 E-value=2.3e-12 Score=128.75 Aligned_cols=137 Identities=9% Similarity=0.180 Sum_probs=75.5
Q ss_pred ccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccC
Q 046908 279 LSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYM 357 (551)
Q Consensus 279 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L 357 (551)
+......+| ++..|+.+.+.++..+ .-..+|.++++|+.+.+.. .++ .++ ...|.++.+|
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~-------I~~~aF~~c~~L~~i~l~~-~i~-~I~----------~~aF~~c~~L 313 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVS-------IGTGAFMNCPALQDIEFSS-RIT-ELP----------ESVFAGCISL 313 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCE-------ECTTTTTTCTTCCEEECCT-TCC-EEC----------TTTTTTCTTC
T ss_pred ceEcccceeeecccccEEecccccce-------ecCcccccccccccccCCC-ccc-ccC----------ceeecCCCCc
Confidence 333444455 6666776666554322 1224466677777776642 222 222 2236777777
Q ss_pred ceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCC
Q 046908 358 AGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 437 (551)
+.+++..+ ++.....+|.+|++|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+..+..|+.+.+..|
T Consensus 314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 77777654 44345567777777777777654 554556677777778887777775432 34556667777766655
Q ss_pred cc
Q 046908 438 NL 439 (551)
Q Consensus 438 ~l 439 (551)
.+
T Consensus 389 ~~ 390 (394)
T 4gt6_A 389 SI 390 (394)
T ss_dssp --
T ss_pred CE
Confidence 43
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=3.4e-16 Score=140.75 Aligned_cols=77 Identities=25% Similarity=0.310 Sum_probs=37.6
Q ss_pred ccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccc-ccccCCCCCCEEeCCCCcCcccCCCC----------C
Q 046908 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIP-ESFSNLKMTESLDLSHNRLSGHIPPQ----------L 423 (551)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~----------~ 423 (551)
++|+.|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|+.|++++|++.+..|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 344455555554442 22 34445555555555555553222 34555555555555555555443332 4
Q ss_pred CCCCCCCeEE
Q 046908 424 TGLNFLSNFN 433 (551)
Q Consensus 424 ~~l~~L~~l~ 433 (551)
..++.|+.||
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4555555554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1.5e-13 Score=120.29 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=95.6
Q ss_pred CceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccC
Q 046908 322 LHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSN 401 (551)
Q Consensus 322 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 401 (551)
-+.+++++|.++ .+|..+ .+.|+.|+|++|.+++..|..|.++++|++|+|++|+|++..+..|.+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~-------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI-------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcEEEeCCCCCC-ccCCCc-------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 367888888886 667643 267899999999999888889999999999999999999877777899
Q ss_pred CCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 402 LKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 402 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
+++|+.|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 99999999999999977666799999999999999999987764
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.1e-14 Score=123.29 Aligned_cols=111 Identities=19% Similarity=0.160 Sum_probs=59.6
Q ss_pred ccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 184 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
.+.++.+|+.|++++|++. .++. +....++|+.|++++|.+++. ..|..+++|++|++++|.+++.++.. +
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~-----~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL-----D 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH-----H
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch-----h
Confidence 3445666667777776665 4443 222233666666666666654 45566666666666666665433221 4
Q ss_pred ccCCCCCEEECCCCcccccCC-Ccc-cccccceeeccccccc
Q 046908 264 SQLKSLELIDIFENSLSGSLV-SSF-NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~ 303 (551)
..+++|++|++++|.+..... ..+ .+++|++|++++|.++
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 555666666666665544332 122 4445555555555444
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.9e-13 Score=119.15 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=98.4
Q ss_pred cCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECC
Q 046908 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVS 435 (551)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 435 (551)
..+.+++++|.++ .+|..+. ++|++|+|++|+|++..+..|.++++|+.|+|++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 5676553 889999999999998889999999999999999999998878889999999999999
Q ss_pred CCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 436 YNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 436 ~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
+|++++..+. ...+..++.+++.+|++.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999988876 6678899999999999999986
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=4.9e-13 Score=116.96 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=96.9
Q ss_pred ceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCC
Q 046908 358 AGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 437 (551)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 68999999997 6776654 89999999999999888999999999999999999999777777899999999999999
Q ss_pred ccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 438 NLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 438 ~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
++++..+. ...+..+..+++.+|++.|+|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99988776 6678899999999999999986
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.8e-15 Score=136.00 Aligned_cols=134 Identities=20% Similarity=0.227 Sum_probs=96.3
Q ss_pred hhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCC
Q 046908 259 ILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 337 (551)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 337 (551)
++..+..+++|++|++++|.+++.+ .+ .+++|++|++++|.++ .+|..+..+++|++|++++|++++ +|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-------~l~~~~~~~~~L~~L~L~~N~l~~-l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-------KIENLDAVADTLEELWISYNQIAS-LS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-------SCSSHHHHHHHCSEEEEEEEECCC-HH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-------cccchhhcCCcCCEEECcCCcCCc-CC
Confidence 4445777778888888888777743 44 7788888888888776 566666667888888888888773 22
Q ss_pred hhhhhhhchhhHhhhccccCceEecCCCcCcccCC-ccccCCCCCcEEEcCCCCCCCcccc----------cccCCCCCC
Q 046908 338 NELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP-REIGQLQNIRALNLSNNFLSGAIPE----------SFSNLKMTE 406 (551)
Q Consensus 338 ~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~ 406 (551)
. +..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..+++|+
T Consensus 110 -~-----------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 110 -G-----------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp -H-----------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred -c-----------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 1 3566778888888888874322 4677888888888888888765443 267788888
Q ss_pred EEeCCCCcCc
Q 046908 407 SLDLSHNRLS 416 (551)
Q Consensus 407 ~L~l~~n~l~ 416 (551)
.|| +|.++
T Consensus 178 ~Ld--~~~i~ 185 (198)
T 1ds9_A 178 KLD--GMPVD 185 (198)
T ss_dssp EEC--CGGGT
T ss_pred EEC--CcccC
Confidence 886 66665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=3.3e-14 Score=140.22 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=38.6
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCccc-----CCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY-----MNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
.+|+.|+|++|.+.+.....+...+.+|+.|+|++|.++......+ ...++|++|+|++|.++.... ..++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV-AVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH-HHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH-HHHHHHH
Confidence 3555555555554422222222223345555555555443222222 123445555555555432110 0233333
Q ss_pred ccCCCCCEEECCCCccc
Q 046908 264 SQLKSLELIDIFENSLS 280 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~ 280 (551)
..+++|++|++++|.++
T Consensus 180 ~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HTCSSCCEEECTTSSCH
T ss_pred hcCCCcCEEeCCCCCCC
Confidence 44555555555555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=2.9e-12 Score=125.88 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=64.8
Q ss_pred hccccCceEecCC-CcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCC
Q 046908 352 SNLKYMAGLDLSS-NELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLS 430 (551)
Q Consensus 352 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 430 (551)
..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 4455667777764 777666666777777777777777777777777777777777777777777755555565555 77
Q ss_pred eEECCCCccccCCC
Q 046908 431 NFNVSYNNLSGPTP 444 (551)
Q Consensus 431 ~l~l~~N~l~~~~~ 444 (551)
.|++++|++.+.+.
T Consensus 107 ~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 107 ELVLSGNPLHCSCA 120 (347)
T ss_dssp EEECCSSCCCCCGG
T ss_pred EEEeeCCCccCCCc
Confidence 77777777776554
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=5.4e-12 Score=123.93 Aligned_cols=109 Identities=20% Similarity=0.250 Sum_probs=96.6
Q ss_pred ceEecCCC-cCcccCCccccCCCCCcEEEcCC-CCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECC
Q 046908 358 AGLDLSSN-ELSGEIPREIGQLQNIRALNLSN-NFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVS 435 (551)
Q Consensus 358 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 435 (551)
..++++++ .++ .+|. +..+++|++|+|++ |++++..+..|.++++|+.|+|++|+|++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 888 6888 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred CCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 436 YNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 436 ~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+|+|++..+.......+..+.+.+|++.|+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence 999998877644334488899999999999964
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=4.3e-13 Score=132.22 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred ccccCceEecCCCcCccc----CCccccCCCCCcEEEcCCCCCCCc----ccccccCCCCCCEEeCCCCcCc
Q 046908 353 NLKYMAGLDLSSNELSGE----IPREIGQLQNIRALNLSNNFLSGA----IPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
.+++|++|+|++|.+++. ++..+...++|++|+|++|.|++. +...+...++|++|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 344455555555544422 123334444555555555555432 1122233444555555555444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=9.1e-10 Score=109.36 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=35.0
Q ss_pred hhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC
Q 046908 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426 (551)
Q Consensus 351 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 426 (551)
|.++.+|+.+.+.++.++.....+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 445555555555555444344445555555555555433 33333344555555555555433 333333444443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.22 E-value=2e-09 Score=106.88 Aligned_cols=297 Identities=11% Similarity=0.063 Sum_probs=184.0
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
...+|+.+.+.. .++.+-..+|.++++|+.++|..+ ++.+...+|.++ +|+.+.+..+ +. .+...+|..+ +|+.
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cccc
Confidence 345788888864 477677888999999999999765 666778888887 6777776433 33 4555667665 7999
Q ss_pred EEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhh
Q 046908 85 LLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV 163 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~ 163 (551)
+.+..+ ...+...+|..+ +++.+.+..+ +..+. ..+..+..++.+.+..+................... ..+..
T Consensus 118 i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 192 (379)
T 4h09_A 118 FEFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL-ESYPA 192 (379)
T ss_dssp EECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE-EECCT
T ss_pred ccCCCc--cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee-ccccc
Confidence 888643 344555566654 5666665543 33332 356667777777766543221000000000000000 00111
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
...+....+..... ......+..+..++.+.+..+ +. .+....|.++..|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccee-EEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 33444444443322 244456666777887777554 33 566677777888888888665 555666778888888888
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceecc-CccccccCC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI-PYQINELSN 321 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~l~~ 321 (551)
.+..+ +..+...+ |..+.+|+.+.+.++.++.+...+| ++.+|+.+.+..+ ++ .+ ..+|.+|.+
T Consensus 269 ~l~~~-i~~i~~~a-----F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-------~I~~~aF~~C~~ 334 (379)
T 4h09_A 269 NFYAK-VKTVPYLL-----CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-------TIQVYAFKNCKA 334 (379)
T ss_dssp EECCC-CSEECTTT-----TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTTTCTT
T ss_pred ccccc-ceeccccc-----cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-------EEHHHHhhCCCC
Confidence 87643 44433333 7788888888888777777777777 7788888888654 33 33 345777888
Q ss_pred CceEEecCC
Q 046908 322 LHVLLLRGN 330 (551)
Q Consensus 322 L~~L~l~~n 330 (551)
|+.+.+..+
T Consensus 335 L~~i~ip~~ 343 (379)
T 4h09_A 335 LSTISYPKS 343 (379)
T ss_dssp CCCCCCCTT
T ss_pred CCEEEECCc
Confidence 888877554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=6.9e-09 Score=101.29 Aligned_cols=164 Identities=15% Similarity=0.245 Sum_probs=89.5
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc--cCCCCCEEECCCC--cccccCC
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS--QLKSLELIDIFEN--SLSGSLV 284 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n--~l~~~~~ 284 (551)
+...+++|+.|++++|.-.. .+. + .+++|++|++..+.+.. .....+. .+++|+.|+|+.+ ...+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~-----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~- 237 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPD-----SVVEDILGSDLPNLEKLVLYVGVEDYGFDG- 237 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCH-----HHHHHHHHSBCTTCCEEEEECBCGGGTCCS-
T ss_pred HHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCCh-----HHHHHHHHccCCCCcEEEEeccccccccch-
Confidence 34556777777777662111 111 2 26777777777766543 2222232 5677777766431 111100
Q ss_pred CcccccccceeeccccccccCccceeccCccc--cccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEec
Q 046908 285 SSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI--NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDL 362 (551)
Q Consensus 285 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~L 362 (551)
... .+...+ ..+++|+.|++++|.+.+..+..+... ..+++|+.|+|
T Consensus 238 ---~~~--------------------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a--------~~~~~L~~LdL 286 (362)
T 2ra8_A 238 ---DMN--------------------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES--------DILPQLETMDI 286 (362)
T ss_dssp ---CGG--------------------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC--------SSGGGCSEEEC
T ss_pred ---hHH--------------------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC--------ccCCCCCEEEC
Confidence 000 001111 235778888887777764333222111 24677888888
Q ss_pred CCCcCccc----CCccccCCCCCcEEEcCCCCCCCcccccccC-CCCCCEEeCCCCc
Q 046908 363 SSNELSGE----IPREIGQLQNIRALNLSNNFLSGAIPESFSN-LKMTESLDLSHNR 414 (551)
Q Consensus 363 s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 414 (551)
+.|.+.+. ++..+..+++|+.|++++|.+++..-..+.. + ...+++++++
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 88887753 2333456788888888888877543333332 2 3568888876
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=3.8e-09 Score=103.14 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=71.0
Q ss_pred hhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccc--cccCCCceEEecC--Ccccc
Q 046908 259 ILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI--NELSNLHVLLLRG--NSLQG 334 (551)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~--n~l~~ 334 (551)
+...+..+++|+.|++++|.-....+ +..++|++|++..|.++. .....+ ..+|+|+.|+|+. |...+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~------~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPD------SVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCH------HHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCCh------HHHHHHHHccCCCCcEEEEecccccccc
Confidence 33445666777777776662111111 246677777777665541 111122 2467777777653 11111
Q ss_pred cC-ChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccc---cCCCCCcEEEcCCCCCCCc----ccccccCCCCCC
Q 046908 335 HI-PNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI---GQLQNIRALNLSNNFLSGA----IPESFSNLKMTE 406 (551)
Q Consensus 335 ~~-p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~ 406 (551)
.. ...+..... -..+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+
T Consensus 236 ~~~~~~l~~~l~-----~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 236 DGDMNVFRPLFS-----KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp CSCGGGTGGGSC-----TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred chhHHHHHHHHh-----cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 10 111110000 0235666777776666654322222 2355666666666666542 122234456666
Q ss_pred EEeCCCCcCc
Q 046908 407 SLDLSHNRLS 416 (551)
Q Consensus 407 ~L~l~~n~l~ 416 (551)
.|++++|.++
T Consensus 311 ~L~L~~n~i~ 320 (362)
T 2ra8_A 311 FINMKYNYLS 320 (362)
T ss_dssp EEECCSBBCC
T ss_pred EEECCCCcCC
Confidence 6666666655
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=1.4e-08 Score=89.36 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=28.9
Q ss_pred cccCceEecCCCcCccc----CCccccCCCCCcEEEc--CCCCCCCc----ccccccCCCCCCEEeCCCCcC
Q 046908 354 LKYMAGLDLSSNELSGE----IPREIGQLQNIRALNL--SNNFLSGA----IPESFSNLKMTESLDLSHNRL 415 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 415 (551)
.+.|++|+|++|.+.+. +...+...++|++|+| ++|.|... +...+...+.|++|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34445555555544432 2333444455555555 45555432 122333445555555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=2.7e-08 Score=87.53 Aligned_cols=41 Identities=12% Similarity=-0.028 Sum_probs=18.9
Q ss_pred hCCCCCCEEECcCC-ccccc----CCcccCCCCCCCEEeccccccc
Q 046908 211 SGCVALDLFDLSNN-NFFGQ----IFPKYMNLTHLHWLYLDNNHFS 251 (551)
Q Consensus 211 ~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 251 (551)
...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34455555555555 54321 1222334444555555555443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=8.8e-08 Score=88.52 Aligned_cols=81 Identities=25% Similarity=0.285 Sum_probs=48.1
Q ss_pred hccccCceEecCCCcCcc--cCCccccCCCCCcEEEcCCCCCCCcc-cccccCCCCCCEEeCCCCcCcccCCC-------
Q 046908 352 SNLKYMAGLDLSSNELSG--EIPREIGQLQNIRALNLSNNFLSGAI-PESFSNLKMTESLDLSHNRLSGHIPP------- 421 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~------- 421 (551)
.+++.|+.|+|++|.+++ .++..+..+++|+.|+|++|+|++.. .+.+..+ +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 456677777777777765 33455566777777777777776541 1223333 677777777777654442
Q ss_pred CCCCCCCCCeEE
Q 046908 422 QLTGLNFLSNFN 433 (551)
Q Consensus 422 ~~~~l~~L~~l~ 433 (551)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244556666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=3.6e-07 Score=84.42 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=28.9
Q ss_pred CCCCCCEEEcccCcCcc--ccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCccc
Q 046908 29 NLTHLKVLDISNNQLSG--KVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNM 93 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 93 (551)
++++|+.|+|++|.|++ .+++.+..+++|++|+|++|.+.+.-....+..+ +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 34455555555555543 2233444455555555555555433222222223 4555555555443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=8.9e-07 Score=75.77 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=63.7
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCC----CCCCEEEcccCcccccccCCCccCC
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANH----SKLEVLLISSGSNMLQVKTETWHPT 104 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l----~~L~~L~l~~n~~~~~~~~~~~~~l 104 (551)
.-.+|+.||++++.|++..-..+..+++|++|+|+++..........+..+ ++|++|++++|..++......+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 335688888888888877777788888899998888863323223345543 4688999988875554333356778
Q ss_pred CCccEEEccCCCC
Q 046908 105 SQLKVLKLSDCHL 117 (551)
Q Consensus 105 ~~L~~L~l~~n~l 117 (551)
++|++|++++|.-
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 8999999999863
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.6e-06 Score=74.16 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=59.1
Q ss_pred chhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCC----CCccEEEccCCC-CCCC-c
Q 046908 48 PSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPT----SQLKVLKLSDCH-LHVI-P 121 (551)
Q Consensus 48 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l----~~L~~L~l~~n~-l~~l-~ 121 (551)
|.....-.+|++||++++.++. .....+..+++|++|+|++|..+....-..+..+ ++|++|++++|. ++.- -
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CcccCCCceEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 4333333578888888887653 2334467888888888888865444322234443 368888888885 5431 1
Q ss_pred hhhhCCCCCCEEEccCCc
Q 046908 122 SFLLQHYHLIFLDLSNNK 139 (551)
Q Consensus 122 ~~~~~~~~L~~L~Ls~n~ 139 (551)
..+..+++|++|++++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 346678888888888885
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.60 E-value=8.8e-05 Score=60.42 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=47.6
Q ss_pred cEEEcCCCCCC-CcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 382 RALNLSNNFLS-GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 382 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..++.+++.++ ..+|..+ -++|+.|+|++|+|+.+.+..|..++.|++|+|++|++.+.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 47888888887 2444433 2468999999999997777788899999999999888877664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=4.1e-05 Score=66.74 Aligned_cols=14 Identities=7% Similarity=0.266 Sum_probs=6.6
Q ss_pred CCCceEEecCCccc
Q 046908 320 SNLHVLLLRGNSLQ 333 (551)
Q Consensus 320 ~~L~~L~l~~n~l~ 333 (551)
+.|+.|+|++|.+.
T Consensus 70 ~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 70 KHIEKFSLANTAIS 83 (197)
T ss_dssp SCCCEEECTTSCCB
T ss_pred CCcCEEEccCCCCC
Confidence 44444444444444
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.40 E-value=5.3e-05 Score=66.06 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=44.4
Q ss_pred cCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-----cccccceeeccccc---cccC
Q 046908 234 YMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-----NLSSVKHLYLQKNA---ITGD 305 (551)
Q Consensus 234 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~L~~n~---l~~~ 305 (551)
+..-+.|+.|+|++|.+...... .+...+..-+.|+.|+|++|.|.......+ .-..|++|+|++|. +..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~-alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~- 143 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN- 143 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH-
T ss_pred HhhCCCcCEEEccCCCCChHHHH-HHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH-
Confidence 34445555555555555432111 344445555666666666666654332222 22345555555432 111
Q ss_pred ccceeccCccccccCCCceEEecCCcc
Q 046908 306 NKFFGRIPYQINELSNLHVLLLRGNSL 332 (551)
Q Consensus 306 ~~~~~~~~~~~~~l~~L~~L~l~~n~l 332 (551)
.....+...+..-+.|+.|+++.|.+
T Consensus 144 -~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 144 -QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp -HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred -HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 00001223344456666666665544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00062 Score=55.34 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=35.3
Q ss_pred ceEecCCCcCc-ccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 358 AGLDLSSNELS-GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 358 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
..++.+++.++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35666666665 23443322 35777777777777666666677777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.44 E-value=2.3 Score=32.02 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=36.4
Q ss_pred CCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCC
Q 046908 16 SNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSI 65 (551)
Q Consensus 16 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 65 (551)
+..++.+-..+|.++++|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566666778888888888888876 44477778888888888876543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.02 E-value=11 Score=28.25 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=19.9
Q ss_pred CCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCC
Q 046908 371 IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSH 412 (551)
Q Consensus 371 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 412 (551)
...+|.+|++|+.+.+..+ ++.+-..+|.++.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344555555555555543 2223344455555555555543
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=63.04 E-value=10 Score=22.61 Aligned_cols=8 Identities=0% Similarity=-0.330 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 046908 505 GASFVTVI 512 (551)
Q Consensus 505 ~~~~~~~~ 512 (551)
+++.++.+
T Consensus 17 VvG~v~gv 24 (38)
T 2k1k_A 17 IFGLLLGA 24 (38)
T ss_dssp HHHHHHHH
T ss_pred ehHHHHHH
Confidence 33333333
No 168
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.07 E-value=45 Score=23.60 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 046908 527 RRWYVFAKI 535 (551)
Q Consensus 527 ~~~~~~~~~ 535 (551)
|.|..|.+.
T Consensus 42 rE~~kFEkE 50 (79)
T 2knc_B 42 KEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=50.48 E-value=19 Score=22.19 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 046908 505 GASFVTVI 512 (551)
Q Consensus 505 ~~~~~~~~ 512 (551)
+++++.++
T Consensus 15 a~~vVGvl 22 (44)
T 2jwa_A 15 ISAVVGIL 22 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 170
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=46.22 E-value=34 Score=19.46 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHH
Q 046908 504 FGASFVTVILGLFAV 518 (551)
Q Consensus 504 ~~~~~~~~~~~~~~~ 518 (551)
++++.++++.++-..
T Consensus 12 ~i~gl~vif~~lg~t 26 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGT 26 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCce
Confidence 344444444443333
No 171
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=44.10 E-value=15 Score=24.64 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Q 046908 504 FGASFVTVILGLFAVLWINSYWR 526 (551)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~ 526 (551)
++.++..++++.+++++..++|+
T Consensus 14 lGg~~~lll~~glcI~ccvkcrh 36 (70)
T 2klu_A 14 LGGVAGLLLFIGLGIFFSVRSRH 36 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhHHHHHHHHHHHHHHHhhHHHH
Confidence 34444444444444443333333
No 172
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=28.13 E-value=60 Score=17.29 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 046908 504 FGASFVTVILGLFAVLWI 521 (551)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~ 521 (551)
++++.++++..+...+|.
T Consensus 8 viaglvalltflafgfwl 25 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 173
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=22.36 E-value=1.3e+02 Score=17.68 Aligned_cols=18 Identities=17% Similarity=-0.164 Sum_probs=8.6
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 046908 499 ALKWSFGASFVTVILGLF 516 (551)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~ 516 (551)
.-++.++++..++++.+.
T Consensus 13 ~~yi~~iaaagvgvlal~ 30 (46)
T 1hgv_A 13 TNYIQAIAAAGVGVLALA 30 (46)
T ss_dssp HTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHH
Confidence 334555555555444433
Done!