BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046909
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 79/150 (52%), Gaps = 28/150 (18%)
Query: 5 RSHFFDVMFAMTEDPF---------------------RSRLDG--APIAHVIALDILGMK 41
RS+ FD + DPF +R+D P AHV D+ G+K
Sbjct: 6 RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65
Query: 42 KDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHV 101
K+EVK+EVE+ VL VSGER + K +K HR E + GKF R+F++ A +E V
Sbjct: 66 KEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRVERSSGKFVRRFRLLEDAKVEEV 121
Query: 102 KVHLENGVLRITVPKLTEEKRRQPKVISIN 131
K LENGVL +TVPK E K+ + K I I+
Sbjct: 122 KAGLENGVLTVTVPK-AEVKKPEVKAIQIS 150
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Query: 27 APIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKF 86
P AHV D+ G+KK+EVK+EVE+ VL VSGER + K +K HR E + GKF
Sbjct: 9 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDK----NDKWHRVERSSGKF 64
Query: 87 WRQFKMPMSADLEHVKVHLENGVLRITVPK 116
R+F++ A +E VK LENGVL +TVPK
Sbjct: 65 VRRFRLLEDAKVEEVKAGLENGVLTVTVPK 94
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Query: 27 APIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKF 86
P AHV D+ G+KK+EVK+EVE+ VL VSGER + K +K HR E + GKF
Sbjct: 8 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDK----NDKWHRVERSSGKF 63
Query: 87 WRQFKMPMSADLEHVKVHLENGVLRITVPK 116
R+F++ A +E VK LENGVL +TVPK
Sbjct: 64 VRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 32 VIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFK 91
V+ D+ G+ ++++++++ +L + GERKS+ E E+ R E +G F R+F
Sbjct: 17 VLYADLPGIDPSQIEVQMDKG-ILSIRGERKSE----SSTETERFSRIERRYGSFHRRFA 71
Query: 92 MPMSADLEHVKVHLENGVLRITVPK 116
+P SAD + + NGVL I +PK
Sbjct: 72 LPDSADADGITAAGRNGVLEIRIPK 96
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 32 VIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFK 91
V+ D+ G+ ++++++++ +L + GERKS+ E E+ R E +G F R+F
Sbjct: 20 VLYADLPGIDPSQIEVQMDKG-ILSIRGERKSE----SSTETERFSRIERRYGSFHRRFA 74
Query: 92 MPMSADLEHVKVHLENGVLRITVPK 116
+P SAD + + NGVL I +PK
Sbjct: 75 LPDSADADGITAAGRNGVLEIRIPK 99
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPK 116
+ +R K+P + E+ ENGVL + +PK
Sbjct: 104 EIYRTIKLPATVKEENASAKFENGVLSVILPK 135
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPK 116
+ +R K+P + E+ ENGVL + +PK
Sbjct: 118 EIYRTIKLPATVKEENASAKFENGVLSVILPK 149
>pdb|2YEU|A Chain A, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complex With Gd
pdb|2YEU|B Chain B, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complex With Gd
pdb|2YEU|C Chain C, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complex With Gd
pdb|2YEU|D Chain D, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complex With Gd
pdb|2YEU|E Chain E, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complex With Gd
pdb|2YEU|F Chain F, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complex With Gd
pdb|2YF3|A Chain A, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Complex With Manganese
pdb|2YF3|B Chain B, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Complex With Manganese
pdb|2YF3|C Chain C, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Complex With Manganese
pdb|2YF3|D Chain D, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Complex With Manganese
pdb|2YF3|E Chain E, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Complex With Manganese
pdb|2YF3|F Chain F, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Complex With Manganese
pdb|2YF4|A Chain A, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Apo Structure
pdb|2YF4|B Chain B, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Apo Structure
pdb|2YF4|C Chain C, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Apo Structure
pdb|2YF4|D Chain D, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Apo Structure
pdb|2YF4|E Chain E, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Apo Structure
pdb|2YF4|F Chain F, Crystal Structure Of Dr2231, The Mazg-Like Protein From
Deinococcus Radiodurans, Apo Structure
pdb|2YF9|A Chain A, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Native Form
pdb|2YFC|A Chain A, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complexed With Mn And Dump
pdb|2YFC|B Chain B, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complexed With Mn And Dump
pdb|2YFC|C Chain C, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complexed With Mn And Dump
pdb|2YFC|D Chain D, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complexed With Mn And Dump
pdb|2YFD|A Chain A, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complexed With Mg And Dump
pdb|2YFD|B Chain B, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complexed With Mg And Dump
pdb|2YFD|C Chain C, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complexed With Mg And Dump
pdb|2YFD|D Chain D, Structural And Functional Insights Of Dr2231 Protein, The
Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase
From Deinococcus Radiodurans, Complexed With Mg And Dump
Length = 154
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 25 DGAPIAHVIA---------LDILGMKKDEVKIEVEENMVLRVSGERKSD 64
D AP+AH +A LD LG+ D V EV + + SG R++D
Sbjct: 78 DLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRAD 126
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 85 KFWRQFKMPM--SADLEHVKVH--LENGVLRITVPKLTEEKRRQ 124
+ W Q +P A E + ++ ++ V+R+T+P LTEE+RR+
Sbjct: 71 QVWDQNAVPAIEKAIREELNLNPTVQGNVIRVTLPPLTEERRRE 114
>pdb|3QTB|A Chain A, Structure Of The Universal Stress Protein From
Archaeoglobus Fulgidus In Complex With Damp
pdb|3QTB|B Chain B, Structure Of The Universal Stress Protein From
Archaeoglobus Fulgidus In Complex With Damp
Length = 155
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 22 SRLDGAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEK 75
+RL G P+ V +L G KDE IE +E + VS R KEG EGE+
Sbjct: 49 ARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIR------KEGAEGEE 96
>pdb|3DLO|A Chain A, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|B Chain B, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|C Chain C, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|D Chain D, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
Length = 155
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 22 SRLDGAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEK 75
+RL G P+ V +L G KDE IE +E + VS R KEG EGE+
Sbjct: 49 ARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIR------KEGAEGEE 96
>pdb|2PMS|C Chain C, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
pdb|2PMS|D Chain D, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
Length = 125
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 19 PFRSRLDGAPIAHVIALDILGMKKDEVKIEVE--ENMVLRVSGERKSDDYYKEGVE 72
P +S+LD A A + L+ L K DE+ E+ E+ + +DY+KEG+E
Sbjct: 48 PLQSKLD-AKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLE 102
>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
pdb|1WQG|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
pdb|1WQH|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
Length = 185
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 106 ENGVLRITVPKLTEEKRRQ 124
+ ++R+ VP+LTEE+RR+
Sbjct: 94 DGALIRVAVPQLTEERRRE 112
>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 223
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 1 MSYARSHFFDVMFAMTEDPFRSRLDGAPI------AHVIALDILGMKKDEVKIEVEENMV 54
M S F+ + +R+ +DG + +H + + I D +K++VEEN
Sbjct: 118 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQI----PDSLKVKVEENTR 173
Query: 55 LRVSGERKSD 64
+ VSG KS+
Sbjct: 174 ITVSGYDKSE 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,437,080
Number of Sequences: 62578
Number of extensions: 177242
Number of successful extensions: 375
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 18
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)