Query 046909
Match_columns 150
No_of_seqs 239 out of 1049
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 2.6E-30 5.6E-35 186.1 13.9 116 8-133 19-137 (142)
2 PRK10743 heat shock protein Ib 100.0 9.2E-30 2E-34 182.5 13.5 115 7-131 18-137 (137)
3 COG0071 IbpA Molecular chapero 100.0 1E-28 2.2E-33 179.0 14.1 106 20-131 39-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 3.1E-27 6.8E-32 158.8 11.4 90 23-116 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.9E-25 4.1E-30 152.2 12.7 99 26-131 4-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.2E-25 2.7E-30 151.1 11.0 90 23-116 2-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 1.2E-24 2.7E-29 145.7 11.5 87 22-116 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 7.5E-24 1.6E-28 140.8 10.1 79 26-116 7-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.7E-23 3.8E-28 138.2 10.4 79 26-116 4-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 2E-23 4.3E-28 138.2 10.2 80 26-117 4-84 (84)
11 cd06481 ACD_HspB9_like Alpha c 99.9 7.5E-23 1.6E-27 136.3 10.6 83 26-116 4-87 (87)
12 cd06476 ACD_HspB2_like Alpha c 99.9 1.1E-22 2.3E-27 134.4 10.5 79 26-116 4-83 (83)
13 cd06479 ACD_HspB7_like Alpha c 99.9 9.5E-23 2.1E-27 134.0 9.9 76 26-116 5-81 (81)
14 cd06482 ACD_HspB10 Alpha cryst 99.9 4.1E-22 8.8E-27 132.6 10.2 81 27-116 6-87 (87)
15 cd06477 ACD_HspB3_Like Alpha c 99.9 9.3E-22 2E-26 129.8 10.7 78 26-115 4-82 (83)
16 cd06526 metazoan_ACD Alpha-cry 99.9 9.2E-22 2E-26 129.8 9.4 78 27-116 5-83 (83)
17 cd06475 ACD_HspB1_like Alpha c 99.9 1.3E-21 2.8E-26 130.1 10.0 78 26-115 7-85 (86)
18 cd06464 ACD_sHsps-like Alpha-c 99.9 3.1E-21 6.7E-26 127.1 11.0 85 26-116 4-88 (88)
19 KOG0710 Molecular chaperone (s 99.8 2.5E-19 5.3E-24 135.7 7.8 113 17-131 80-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 2.7E-18 5.9E-23 114.9 10.1 79 26-116 12-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 2.9E-16 6.3E-21 116.6 12.2 95 26-133 69-164 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.7E-14 3.6E-19 91.8 9.6 78 26-116 3-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 3.6E-12 7.7E-17 82.4 9.4 69 26-119 3-71 (78)
24 cd06463 p23_like Proteins cont 99.1 6.8E-10 1.5E-14 71.7 9.5 74 26-119 3-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 1.9E-09 4.2E-14 79.7 8.9 75 22-120 92-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 4E-08 8.6E-13 64.0 8.5 74 26-119 4-77 (84)
27 PF08190 PIH1: pre-RNA process 98.4 1.3E-06 2.7E-11 70.4 8.7 67 26-115 258-327 (328)
28 PF04969 CS: CS domain; Inter 98.4 8.6E-06 1.9E-10 51.8 9.9 75 22-116 1-79 (79)
29 cd06465 p23_hB-ind1_like p23_l 98.0 7.6E-05 1.7E-09 51.1 9.5 76 22-118 1-78 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 98.0 8.6E-05 1.9E-09 48.5 8.7 74 26-119 4-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.9 0.00013 2.7E-09 47.5 7.8 71 26-119 5-77 (85)
32 cd06468 p23_CacyBP p23_like do 97.7 0.00093 2E-08 44.1 9.7 74 26-119 8-85 (92)
33 cd06488 p23_melusin_like p23_l 97.7 0.00081 1.8E-08 44.3 9.4 74 26-119 7-80 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.7 0.00058 1.2E-08 44.7 8.5 71 26-119 5-77 (85)
35 cd00237 p23 p23 binds heat sho 96.9 0.019 4E-07 39.4 9.8 76 22-119 2-79 (106)
36 cd06494 p23_NUDCD2_like p23-li 96.9 0.0092 2E-07 40.0 8.0 70 26-119 12-83 (93)
37 PLN03088 SGT1, suppressor of 96.5 0.018 3.8E-07 47.4 8.5 78 22-119 157-236 (356)
38 KOG1309 Suppressor of G2 allel 96.2 0.022 4.8E-07 42.6 6.6 78 22-119 4-83 (196)
39 cd06492 p23_mNUDC_like p23-lik 96.1 0.082 1.8E-06 34.8 8.4 71 26-119 5-79 (87)
40 cd06490 p23_NCB5OR p23_like do 95.3 0.49 1.1E-05 31.0 9.7 72 26-119 5-80 (87)
41 cd06495 p23_NUDCD3_like p23-li 94.5 0.53 1.1E-05 32.0 8.4 73 26-118 11-86 (102)
42 PF13349 DUF4097: Domain of un 87.3 7.5 0.00016 27.6 8.6 62 44-113 86-147 (166)
43 PF14913 DPCD: DPCD protein fa 84.7 7.1 0.00015 29.6 7.4 70 26-118 93-170 (194)
44 cd06482 ACD_HspB10 Alpha cryst 84.7 2.7 5.8E-05 27.7 4.6 35 85-120 9-43 (87)
45 cd06476 ACD_HspB2_like Alpha c 82.0 3.1 6.8E-05 27.0 4.1 33 85-118 8-40 (83)
46 cd06470 ACD_IbpA-B_like Alpha- 81.9 4.2 9E-05 26.6 4.7 36 84-120 11-46 (90)
47 cd06497 ACD_alphaA-crystallin_ 81.6 3.5 7.5E-05 26.9 4.3 33 84-117 10-42 (86)
48 KOG2265 Nuclear distribution p 81.6 8.9 0.00019 28.7 6.8 71 26-119 25-97 (179)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 81.3 3.9 8.5E-05 26.4 4.4 32 85-117 8-39 (83)
50 cd06477 ACD_HspB3_Like Alpha c 80.8 4.6 0.0001 26.2 4.6 34 85-119 8-41 (83)
51 cd06480 ACD_HspB8_like Alpha-c 80.7 3.9 8.5E-05 27.2 4.3 31 29-59 58-89 (91)
52 PRK10743 heat shock protein Ib 80.5 7.9 0.00017 27.6 6.1 33 86-119 47-79 (137)
53 cd06526 metazoan_ACD Alpha-cry 78.0 5.8 0.00013 25.3 4.4 34 85-119 8-41 (83)
54 cd06471 ACD_LpsHSP_like Group 77.7 3.8 8.2E-05 26.7 3.5 30 29-59 62-91 (93)
55 cd06479 ACD_HspB7_like Alpha c 77.5 7 0.00015 25.2 4.7 33 85-118 9-41 (81)
56 cd06464 ACD_sHsps-like Alpha-c 76.8 4.5 9.8E-05 25.4 3.6 32 28-60 55-87 (88)
57 PRK11597 heat shock chaperone 75.8 12 0.00026 26.9 5.9 32 86-118 45-76 (142)
58 COG5091 SGT1 Suppressor of G2 75.6 1.4 3E-05 35.4 1.1 80 22-120 177-258 (368)
59 cd06498 ACD_alphaB-crystallin_ 75.2 7.1 0.00015 25.3 4.2 32 85-117 8-39 (84)
60 cd06472 ACD_ScHsp26_like Alpha 74.0 5.5 0.00012 25.9 3.5 31 28-59 59-90 (92)
61 cd06475 ACD_HspB1_like Alpha c 73.5 11 0.00024 24.5 4.8 33 85-118 11-43 (86)
62 PF00011 HSP20: Hsp20/alpha cr 73.2 11 0.00023 24.7 4.9 33 84-117 7-39 (102)
63 cd06481 ACD_HspB9_like Alpha c 73.1 10 0.00022 24.7 4.6 34 85-119 8-41 (87)
64 KOG3591 Alpha crystallins [Pos 72.8 4.8 0.0001 30.0 3.3 33 31-63 117-150 (173)
65 PF04972 BON: BON domain; Int 68.5 12 0.00025 22.3 3.9 25 38-63 12-36 (64)
66 PF01954 DUF104: Protein of un 67.0 5.8 0.00013 24.3 2.3 17 99-115 3-19 (60)
67 KOG1667 Zn2+-binding protein M 66.3 50 0.0011 26.4 7.8 79 23-120 216-296 (320)
68 KOG3260 Calcyclin-binding prot 65.9 34 0.00073 26.0 6.5 77 23-119 78-155 (224)
69 PRK05518 rpl6p 50S ribosomal p 64.1 34 0.00074 25.6 6.4 45 42-115 13-57 (180)
70 TIGR03653 arch_L6P archaeal ri 62.5 42 0.00091 24.8 6.5 45 42-115 7-51 (170)
71 PF08308 PEGA: PEGA domain; I 60.8 27 0.00059 21.2 4.6 38 26-63 32-69 (71)
72 PRK10568 periplasmic protein; 60.6 23 0.00049 26.8 5.0 26 37-63 72-97 (203)
73 COG0071 IbpA Molecular chapero 60.1 23 0.0005 25.1 4.7 32 86-118 52-83 (146)
74 cd06469 p23_DYX1C1_like p23_li 59.8 30 0.00064 21.3 4.7 34 29-63 36-70 (78)
75 TIGR03654 L6_bact ribosomal pr 58.6 47 0.001 24.6 6.3 44 42-115 11-54 (175)
76 KOG3413 Mitochondrial matrix p 54.3 14 0.0003 26.9 2.6 41 93-133 66-109 (156)
77 PRK05498 rplF 50S ribosomal pr 54.0 54 0.0012 24.3 6.0 44 42-115 12-55 (178)
78 PTZ00027 60S ribosomal protein 53.6 51 0.0011 24.8 5.8 47 42-115 13-59 (190)
79 cd06467 p23_NUDC_like p23_like 51.7 56 0.0012 20.4 5.1 31 85-115 9-39 (85)
80 KOG3158 HSP90 co-chaperone p23 46.5 1.2E+02 0.0027 22.7 7.0 71 26-118 14-84 (180)
81 CHL00140 rpl6 ribosomal protei 45.9 66 0.0014 23.9 5.3 21 42-63 12-32 (178)
82 cd00503 Frataxin Frataxin is a 43.7 26 0.00055 23.8 2.6 18 99-116 28-45 (105)
83 PF01491 Frataxin_Cyay: Fratax 42.7 32 0.00069 23.4 3.0 19 99-117 30-48 (109)
84 PTZ00179 60S ribosomal protein 42.1 88 0.0019 23.5 5.5 21 42-63 12-32 (189)
85 PRK11198 LysM domain/BON super 41.3 42 0.00091 24.0 3.6 25 38-63 38-62 (147)
86 PRK00446 cyaY frataxin-like pr 40.9 27 0.00059 23.8 2.4 33 101-133 29-64 (105)
87 TIGR03421 FeS_CyaY iron donor 39.6 28 0.0006 23.6 2.2 17 100-116 26-42 (102)
88 cd01759 PLAT_PL PLAT/LH2 domai 39.5 1.3E+02 0.0027 20.8 8.2 44 85-134 45-89 (113)
89 cd06494 p23_NUDCD2_like p23-li 37.9 1.2E+02 0.0025 20.0 5.7 31 84-114 15-45 (93)
90 PRK13726 conjugal transfer pil 34.7 81 0.0018 23.7 4.3 20 43-63 131-150 (188)
91 TIGR03422 mito_frataxin fratax 32.5 34 0.00074 22.9 1.8 16 102-117 30-45 (97)
92 PF13856 Gifsy-2: ATP-binding 30.1 26 0.00057 23.0 0.9 48 4-51 4-51 (95)
93 PF07873 YabP: YabP family; I 29.3 44 0.00096 20.5 1.8 23 40-63 23-45 (66)
94 cd02178 GH16_beta_agarase Beta 28.4 1.4E+02 0.0031 23.1 5.0 45 47-95 60-110 (258)
95 TIGR02934 nifT_nitrog probable 28.0 75 0.0016 19.9 2.6 24 106-133 9-32 (67)
96 PF14814 UB2H: Bifunctional tr 26.6 1.8E+02 0.0039 18.6 5.1 43 71-113 28-72 (85)
97 TIGR02856 spore_yqfC sporulati 25.6 55 0.0012 21.3 1.8 24 39-63 40-63 (85)
98 PF12673 DUF3794: Domain of un 25.6 1.7E+02 0.0037 18.0 7.7 48 45-94 16-63 (87)
99 PF05309 TraE: TraE protein; 25.4 1.3E+02 0.0029 22.2 4.1 20 43-63 131-150 (187)
100 cd02175 GH16_lichenase lichena 25.2 2.9E+02 0.0063 20.6 6.2 50 41-95 30-80 (212)
101 KOG4356 Uncharacterized conser 25.1 13 0.00029 30.3 -1.5 69 26-117 237-308 (310)
102 cd02182 GH16_Strep_laminarinas 24.7 1.9E+02 0.0042 22.4 5.1 46 42-94 45-98 (259)
103 cd02180 GH16_fungal_KRE6_gluca 24.4 2E+02 0.0044 23.2 5.2 50 41-95 39-91 (295)
104 PLN02711 Probable galactinol-- 23.8 1.9E+02 0.0042 26.6 5.4 37 91-130 737-775 (777)
105 COG4004 Uncharacterized protei 23.4 1.3E+02 0.0027 20.2 3.2 31 26-61 30-60 (96)
106 TIGR02892 spore_yabP sporulati 23.2 69 0.0015 21.0 1.9 23 40-63 22-44 (85)
107 PF12080 GldM_C: GldM C-termin 22.9 1.1E+02 0.0025 22.6 3.3 28 33-61 18-45 (181)
108 PF14545 DBB: Dof, BCAP, and B 22.8 3E+02 0.0065 19.8 5.3 37 26-62 46-85 (142)
109 COG1965 CyaY Protein implicate 22.5 74 0.0016 21.8 2.0 17 101-117 30-46 (106)
110 PF08845 SymE_toxin: Toxin Sym 22.3 1.4E+02 0.003 17.9 3.0 23 35-58 33-56 (57)
111 cd02177 GH16_kappa_carrageenas 22.2 2.6E+02 0.0056 22.2 5.3 48 46-94 45-103 (269)
112 COG2880 Uncharacterized protei 21.5 7.8 0.00017 24.3 -2.7 13 100-112 6-18 (67)
113 PF15525 DUF4652: Domain of un 21.2 3.8E+02 0.0083 20.5 7.5 70 40-116 112-181 (200)
114 TIGR02761 TraE_TIGR type IV co 20.3 2.6E+02 0.0057 20.6 4.8 21 42-63 130-150 (181)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=2.6e-30 Score=186.13 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=97.4
Q ss_pred hHHHHhhccCCCCCCccc--C-CCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeee
Q 046909 8 FFDVMFAMTEDPFRSRLD--G-APIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFG 84 (150)
Q Consensus 8 ~~d~~~~~~~~~~~p~~d--e-~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g 84 (150)
+|+.|.+.+...+.|++| | ++++|+|.++|||++++||+|.+.+ +.|+|+|+++. ..++.+|+++||.+|
T Consensus 19 l~~~~~~~~~~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~------~~~~~~~~~~Er~~g 91 (142)
T PRK11597 19 LANALQNAGESQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ------PEKEVKWLHQGLVNQ 91 (142)
T ss_pred HHHHhcccCccCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc------ccCCCcEEEEEEeCc
Confidence 333333333345678999 6 5789999999999999999999999 99999999765 235678999999999
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEeccCcccCCCCeEEEeeec
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKLTEEKRRQPKVISINDE 133 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I~~~ 133 (150)
+|.|+|.||.+||.+ +|+|+||||+|+|||..++ ...+++|+|+..
T Consensus 92 ~F~R~f~LP~~vd~~--~A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~ 137 (142)
T PRK11597 92 PFSLSFTLAENMEVS--GATFVNGLLHIDLIRNEPE-AIAPQRIAISER 137 (142)
T ss_pred EEEEEEECCCCcccC--cCEEcCCEEEEEEeccCcc-ccCCcEEEECCc
Confidence 999999999999998 6999999999999997543 347899999876
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.97 E-value=9.2e-30 Score=182.54 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=95.5
Q ss_pred hhHHHHhhccCC--CCCCccc--C-CCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeee
Q 046909 7 HFFDVMFAMTED--PFRSRLD--G-APIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAES 81 (150)
Q Consensus 7 ~~~d~~~~~~~~--~~~p~~d--e-~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~ 81 (150)
++|+.|++.+.. ...|++| + ++++|+|.++|||++++||+|++.+ +.|+|+|+++. + .++.+|+++||
T Consensus 18 ~lf~~~~~~~~~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er 90 (137)
T PRK10743 18 RLFNLLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHAD----E--QKERTYLYQGI 90 (137)
T ss_pred HHhhhhhhhhhcccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECc----c--ccCCcEEEEEE
Confidence 355555554332 2238899 3 8999999999999999999999999 89999999766 2 25677999999
Q ss_pred eeeEEEEEEECCCCCcccceEEEEeCCEEEEEEeccCcccCCCCeEEEee
Q 046909 82 TFGKFWRQFKMPMSADLEHVKVHLENGVLRITVPKLTEEKRRQPKVISIN 131 (150)
Q Consensus 82 ~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I~ 131 (150)
.+|+|.|+|.||.+||.++ |+|+||||+|+|||..++ ...+|+|+|+
T Consensus 91 ~~g~F~R~~~LP~~Vd~~~--A~~~dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 91 AERNFERKFQLAENIHVRG--ANLVNGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred ECCEEEEEEECCCCcccCc--CEEeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 9999999999999999994 999999999999997543 3578999984
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-28 Score=179.05 Aligned_cols=106 Identities=33% Similarity=0.544 Sum_probs=98.1
Q ss_pred CCCccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCc
Q 046909 20 FRSRLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSAD 97 (150)
Q Consensus 20 ~~p~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd 97 (150)
+.|++| ++++.|+|.++||||+++||+|.+++ +.|+|+|++.. +...+...++++|+.+|.|.|+|.||..|+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~----~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~ 113 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREE----EEEEEEEGYLRRERAYGEFERTFRLPEKVD 113 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecc----cccccCCceEEEEEEeeeEEEEEECccccc
Confidence 679999 99999999999999999999999999 89999999987 556788899999999999999999999999
Q ss_pred ccceEEEEeCCEEEEEEeccCcccCCCCeEEEee
Q 046909 98 LEHVKVHLENGVLRITVPKLTEEKRRQPKVISIN 131 (150)
Q Consensus 98 ~~~i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I~ 131 (150)
.+.++|+|+||||+|+|||..++. ..+++|.|+
T Consensus 114 ~~~~~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 114 PEVIKAKYKNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred ccceeeEeeCcEEEEEEecccccc-ccCceeecC
Confidence 999999999999999999999863 467888774
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=3.1e-27 Score=158.75 Aligned_cols=90 Identities=52% Similarity=0.866 Sum_probs=82.8
Q ss_pred ccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccc
Q 046909 23 RLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEH 100 (150)
Q Consensus 23 ~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 100 (150)
++| |+++.|+|.++|||++++||+|++.+++.|+|+|++.. +....+..++++|+.+|.|.|+|.||.+|+.++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~----~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKK----EEEKKGDDWHRVERSSGRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecc----cccccCCCEEEEEEeccEEEEEEECCCCCCHHH
Confidence 467 99999999999999999999999987458999999877 344567889999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEec
Q 046909 101 VKVHLENGVLRITVPK 116 (150)
Q Consensus 101 i~A~~~~GvL~I~lPK 116 (150)
|+|+|+||+|+|++||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.93 E-value=1.9e-25 Score=152.19 Aligned_cols=99 Identities=37% Similarity=0.628 Sum_probs=83.4
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
+++++|.|.++|||+.+++|+|++.+ +.|.|+|.+.. ...+..++..|+.++.|.|+|.||.++|.++|+|.|
T Consensus 4 e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~------~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~ 76 (102)
T PF00011_consen 4 EDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKE------EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY 76 (102)
T ss_dssp ESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEG------EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE
T ss_pred ECCCEEEEEEECCCCChHHEEEEEec-Cccceeceeee------eeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe
Confidence 78999999999999999999999999 89999999883 345677888899999999999999999999999999
Q ss_pred eCCEEEEEEeccCcccCCCCeEEEee
Q 046909 106 ENGVLRITVPKLTEEKRRQPKVISIN 131 (150)
Q Consensus 106 ~~GvL~I~lPK~~~~~~~~~~~I~I~ 131 (150)
+||+|+|++||....+...+++|+|+
T Consensus 77 ~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 77 ENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred cCCEEEEEEEccccccCCCCeEEEeC
Confidence 99999999999999865689999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=1.2e-25 Score=151.11 Aligned_cols=90 Identities=32% Similarity=0.561 Sum_probs=80.8
Q ss_pred ccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccc
Q 046909 23 RLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEH 100 (150)
Q Consensus 23 ~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 100 (150)
++| |+++.|+|.++|||++++||+|++.+ +.|+|+|++.... +....+.+|+++|+.+|.|.|+|.|| +++.+.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~--~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~ 77 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESK--DEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEE 77 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccc--ccccccCCEEEEeeeccEEEEEEECC-CCCHHH
Confidence 678 99999999999999999999999999 8999999988621 12233457999999999999999999 799999
Q ss_pred eEEEEeCCEEEEEEec
Q 046909 101 VKVHLENGVLRITVPK 116 (150)
Q Consensus 101 i~A~~~~GvL~I~lPK 116 (150)
|+|+|+||+|+|++||
T Consensus 78 i~A~~~dGvL~I~lPK 93 (93)
T cd06471 78 IKAKYENGVLKITLPK 93 (93)
T ss_pred CEEEEECCEEEEEEcC
Confidence 9999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=1.2e-24 Score=145.68 Aligned_cols=87 Identities=25% Similarity=0.399 Sum_probs=78.8
Q ss_pred Cccc--CC-CCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcc
Q 046909 22 SRLD--GA-PIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADL 98 (150)
Q Consensus 22 p~~d--e~-~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~ 98 (150)
|++| ++ +++|+|.++|||+++++|+|.+.+ +.|+|+|++.. ... .+.+|+++|+.+|.|.|+|.||.++|.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~----~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~ 74 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKAD----EEN-EEREYLHRGIAKRAFERSFNLADHVKV 74 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ccc-CCCcEEEEEEeceEEEEEEECCCCceE
Confidence 5788 65 599999999999999999999999 89999999988 333 677899999999999999999999987
Q ss_pred cceEEEEeCCEEEEEEec
Q 046909 99 EHVKVHLENGVLRITVPK 116 (150)
Q Consensus 99 ~~i~A~~~~GvL~I~lPK 116 (150)
. +|+|+||+|+|+||+
T Consensus 75 ~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 75 K--GAELENGLLTIDLER 90 (90)
T ss_pred C--eeEEeCCEEEEEEEC
Confidence 5 899999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=7.5e-24 Score=140.82 Aligned_cols=79 Identities=19% Similarity=0.409 Sum_probs=70.9
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
+++++|.|.++||||+++||+|++.+ +.|+|+|++.. . .++..|+++| |.|+|.||.+||.++|+|+|
T Consensus 7 e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~ 74 (86)
T cd06497 7 SDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSE----R--QDDHGYISRE-----FHRRYRLPSNVDQSAITCSL 74 (86)
T ss_pred EcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----e--eCCCCEEEEE-----EEEEEECCCCCChHHeEEEe
Confidence 89999999999999999999999999 89999998654 2 2345666654 99999999999999999999
Q ss_pred -eCCEEEEEEec
Q 046909 106 -ENGVLRITVPK 116 (150)
Q Consensus 106 -~~GvL~I~lPK 116 (150)
+||+|+|++||
T Consensus 75 ~~dGvL~I~~PK 86 (86)
T cd06497 75 SADGMLTFSGPK 86 (86)
T ss_pred CCCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.90 E-value=1.7e-23 Score=138.21 Aligned_cols=79 Identities=20% Similarity=0.382 Sum_probs=69.7
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
+++++|.|.++||||+++||+|++.+ +.|+|+|++.. . .++..|+++| |.|+|.||.+||.++|+|+|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~ 71 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEE----R--QDEHGFISRE-----FHRRYRLPPGVDPAAITSSL 71 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEce----E--cCCCCEEEEE-----EEEEEECCCCcChHHeEEEE
Confidence 57899999999999999999999999 89999998654 2 2334566554 99999999999999999999
Q ss_pred -eCCEEEEEEec
Q 046909 106 -ENGVLRITVPK 116 (150)
Q Consensus 106 -~~GvL~I~lPK 116 (150)
+||+|+|++||
T Consensus 72 ~~dGvL~I~~PK 83 (83)
T cd06478 72 SADGVLTISGPR 83 (83)
T ss_pred CCCCEEEEEecC
Confidence 69999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.90 E-value=2e-23 Score=138.22 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=70.2
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
+++++|.|.++||||+++||+|.+.+ +.|+|+|++.. +. ++..|+++ .|.|+|.||.+||.++|+|+|
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~ 71 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEE----RQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSL 71 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEe
Confidence 57899999999999999999999999 89999998655 22 34456644 499999999999999999999
Q ss_pred e-CCEEEEEEecc
Q 046909 106 E-NGVLRITVPKL 117 (150)
Q Consensus 106 ~-~GvL~I~lPK~ 117 (150)
+ ||+|+|++||+
T Consensus 72 ~~dGvL~I~lPk~ 84 (84)
T cd06498 72 SPDGVLTVCGPRK 84 (84)
T ss_pred CCCCEEEEEEeCC
Confidence 5 99999999985
No 11
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.89 E-value=7.5e-23 Score=136.29 Aligned_cols=83 Identities=25% Similarity=0.429 Sum_probs=72.7
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
+..+.|.|.++||||+++||+|++.+ +.|+|+|++.. ........|. +.+|+|.|+|.||.+||.++|+|+|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREK----KNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEee----ecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEe
Confidence 57889999999999999999999999 99999999876 3333344454 3479999999999999999999999
Q ss_pred -eCCEEEEEEec
Q 046909 106 -ENGVLRITVPK 116 (150)
Q Consensus 106 -~~GvL~I~lPK 116 (150)
+||+|+|++|+
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999995
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.89 E-value=1.1e-22 Score=134.41 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=68.7
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
.++++|.|.++||||+++||+|++.+ +.|+|+|++.. .. ....+++ +.|.|+|.||.+||.++|+|+|
T Consensus 4 ~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~-----~eF~R~~~LP~~vd~~~v~A~~ 71 (83)
T cd06476 4 SEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQ----RM--DRHGFVS-----REFTRTYILPMDVDPLLVRASL 71 (83)
T ss_pred ccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--cCCCEEE-----EEEEEEEECCCCCChhhEEEEe
Confidence 46899999999999999999999999 89999999754 21 2333554 4599999999999999999999
Q ss_pred e-CCEEEEEEec
Q 046909 106 E-NGVLRITVPK 116 (150)
Q Consensus 106 ~-~GvL~I~lPK 116 (150)
. ||+|+|++||
T Consensus 72 ~~dGvL~I~~Pr 83 (83)
T cd06476 72 SHDGILCIQAPR 83 (83)
T ss_pred cCCCEEEEEecC
Confidence 5 9999999997
No 13
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=9.5e-23 Score=133.97 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=69.3
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
|+++.|.|.++||||+++||+|++.+ +.|+|+|+++. +. . ..+|+|.|+|.||.+||.++|+|+|
T Consensus 5 e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~----~~----~------~~~g~F~R~~~LP~~vd~e~v~A~l 69 (81)
T cd06479 5 TLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLA----SD----G------TVMNTFTHKCQLPEDVDPTSVSSSL 69 (81)
T ss_pred CcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----cC----C------CEEEEEEEEEECCCCcCHHHeEEEe
Confidence 89999999999999999999999999 89999999866 21 1 2478999999999999999999997
Q ss_pred -eCCEEEEEEec
Q 046909 106 -ENGVLRITVPK 116 (150)
Q Consensus 106 -~~GvL~I~lPK 116 (150)
+||+|+|++++
T Consensus 70 ~~~GvL~I~~~~ 81 (81)
T cd06479 70 GEDGTLTIKARR 81 (81)
T ss_pred cCCCEEEEEecC
Confidence 99999999985
No 14
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.88 E-value=4.1e-22 Score=132.56 Aligned_cols=81 Identities=23% Similarity=0.424 Sum_probs=70.3
Q ss_pred CCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEe
Q 046909 27 APIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLE 106 (150)
Q Consensus 27 ~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 106 (150)
+++.|+|.++||||+++||+|++.+ +.|+|+|+++.. ....+ .+|+.+|+|.|+|.||.+||.++|+|+|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~----~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~ 76 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENR----YDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYG 76 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecc----cccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEc
Confidence 5789999999999999999999999 999999998772 22111 24778999999999999999999999998
Q ss_pred CC-EEEEEEec
Q 046909 107 NG-VLRITVPK 116 (150)
Q Consensus 107 ~G-vL~I~lPK 116 (150)
|| +|+|.-|.
T Consensus 77 ~~~~l~i~~~~ 87 (87)
T cd06482 77 LGSVVKIETPC 87 (87)
T ss_pred CCCEEEEeeCC
Confidence 66 99998873
No 15
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.87 E-value=9.3e-22 Score=129.79 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=68.5
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
|+++.|.|.++||||+++||+|.+.+ +.|+|+|++.. +. ....+. .++|.|+|.||.+|+.++|+|+|
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~----~~--~~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~ 71 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGV----RM--DEHGFI-----SRSFTRQYQLPDGVEHKDLSAML 71 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----cc--CCCCEE-----EEEEEEEEECCCCcchheEEEEE
Confidence 78999999999999999999999999 99999999876 22 223343 23899999999999999999998
Q ss_pred -eCCEEEEEEe
Q 046909 106 -ENGVLRITVP 115 (150)
Q Consensus 106 -~~GvL~I~lP 115 (150)
+||||+|+.|
T Consensus 72 ~~dGvL~I~~~ 82 (83)
T cd06477 72 CHDGILVVETK 82 (83)
T ss_pred cCCCEEEEEec
Confidence 8999999976
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=9.2e-22 Score=129.79 Aligned_cols=78 Identities=29% Similarity=0.495 Sum_probs=68.3
Q ss_pred CCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEe
Q 046909 27 APIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLE 106 (150)
Q Consensus 27 ~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 106 (150)
.++.|.|.++||||+++||+|++.+ +.|+|+|++... .. .. ++.++.|.|+|.||.+||.++++|+|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~----~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEER----ED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLS 72 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeee----cc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeC
Confidence 3469999999999999999999999 999999998772 21 12 234688999999999999999999999
Q ss_pred C-CEEEEEEec
Q 046909 107 N-GVLRITVPK 116 (150)
Q Consensus 107 ~-GvL~I~lPK 116 (150)
| |+|+|++||
T Consensus 73 ~~GvL~I~~Pk 83 (83)
T cd06526 73 SDGVLTIEAPK 83 (83)
T ss_pred CCcEEEEEecC
Confidence 8 999999997
No 17
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.3e-21 Score=130.09 Aligned_cols=78 Identities=19% Similarity=0.379 Sum_probs=68.6
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
|+++.|.|.++||||++++|+|.+.+ +.|+|+|++.. .. ....+. .++|.|+|.||.+||.++|+|+|
T Consensus 7 e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 7 QTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEE----KQ--DEHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred EcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECc----Cc--CCCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 89999999999999999999999999 89999998765 22 223333 35899999999999999999999
Q ss_pred e-CCEEEEEEe
Q 046909 106 E-NGVLRITVP 115 (150)
Q Consensus 106 ~-~GvL~I~lP 115 (150)
. ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 7 999999998
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.86 E-value=3.1e-21 Score=127.08 Aligned_cols=85 Identities=45% Similarity=0.730 Sum_probs=77.5
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
|+++.|+|.++|||+++++|+|++.+ +.|.|+|++... .... ..+...++.++.|.|+|.||.++|.+.++|.|
T Consensus 4 e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~----~~~~-~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~ 77 (88)
T cd06464 4 ETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEE----EEEE-ENYLRRERSYGSFSRSFRLPEDVDPDKIKASL 77 (88)
T ss_pred EcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecc----cccC-CcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE
Confidence 67799999999999999999999999 999999999883 2222 27888899999999999999999999999999
Q ss_pred eCCEEEEEEec
Q 046909 106 ENGVLRITVPK 116 (150)
Q Consensus 106 ~~GvL~I~lPK 116 (150)
+||+|+|++||
T Consensus 78 ~~G~L~I~~pk 88 (88)
T cd06464 78 ENGVLTITLPK 88 (88)
T ss_pred eCCEEEEEEcC
Confidence 99999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.5e-19 Score=135.67 Aligned_cols=113 Identities=40% Similarity=0.700 Sum_probs=95.4
Q ss_pred CCCCCCccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCC
Q 046909 17 EDPFRSRLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPM 94 (150)
Q Consensus 17 ~~~~~p~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~ 94 (150)
..++.++++ +..+.|++.++|||+++++|+|+++++++|+|+|++..+. +.......|+..|+.+|.|.|.|.||+
T Consensus 80 ~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~--e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 80 KSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEE--EESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccc--ccccCCccceeehhcccceEeeecCCc
Confidence 344667788 9999999999999999999999999955899999999842 222366778999999999999999999
Q ss_pred CCcccceEEEEeCCEEEEEEeccCcc-cCCCCeEEEee
Q 046909 95 SADLEHVKVHLENGVLRITVPKLTEE-KRRQPKVISIN 131 (150)
Q Consensus 95 ~vd~~~i~A~~~~GvL~I~lPK~~~~-~~~~~~~I~I~ 131 (150)
+++.+.|+|.|+||||+|++||..+. +....+.|.|.
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 99999999999999999999999984 23445555553
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.78 E-value=2.7e-18 Score=114.95 Aligned_cols=79 Identities=18% Similarity=0.348 Sum_probs=69.1
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
++++.|.|.+++.||+++||+|++.+ +.|+|+|++.. .. ....+. .++|.|+|.||.+||.+.|+|+|
T Consensus 12 ~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~----~~--~e~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l 79 (91)
T cd06480 12 NSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEE----QQ--KEGGIV-----SKNFTKKIQLPPEVDPVTVFASL 79 (91)
T ss_pred CCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECc----cc--CCCCEE-----EEEEEEEEECCCCCCchhEEEEe
Confidence 67789999999999999999999999 89999999887 22 222344 36799999999999999999999
Q ss_pred e-CCEEEEEEec
Q 046909 106 E-NGVLRITVPK 116 (150)
Q Consensus 106 ~-~GvL~I~lPK 116 (150)
. ||+|+|.+|.
T Consensus 80 ~~dGvL~IeaP~ 91 (91)
T cd06480 80 SPEGLLIIEAPQ 91 (91)
T ss_pred CCCCeEEEEcCC
Confidence 7 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.9e-16 Score=116.56 Aligned_cols=95 Identities=23% Similarity=0.390 Sum_probs=83.9
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
.+.+.|.|.+|+..|++++|+|.+.+ +.|.|+|++.. ..++..+.. ..|.|+|.||.+||+++|++.+
T Consensus 69 ~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHee------r~d~~G~v~-----R~F~R~y~LP~~vdp~~V~S~L 136 (173)
T KOG3591|consen 69 NDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEE------KEDEHGYVS-----RSFVRKYLLPEDVDPTSVTSTL 136 (173)
T ss_pred cCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecc------ccCCCCeEE-----EEEEEEecCCCCCChhheEEee
Confidence 89999999999999999999999999 89999999877 225555554 4599999999999999999999
Q ss_pred -eCCEEEEEEeccCcccCCCCeEEEeeec
Q 046909 106 -ENGVLRITVPKLTEEKRRQPKVISINDE 133 (150)
Q Consensus 106 -~~GvL~I~lPK~~~~~~~~~~~I~I~~~ 133 (150)
.||+|+|.+||.+.... ..|.|+|+..
T Consensus 137 S~dGvLtI~ap~~~~~~~-~er~ipI~~~ 164 (173)
T KOG3591|consen 137 SSDGVLTIEAPKPPPKQD-NERSIPIEQV 164 (173)
T ss_pred CCCceEEEEccCCCCcCc-cceEEeEeec
Confidence 59999999999988633 5899999988
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.59 E-value=1.7e-14 Score=91.78 Aligned_cols=78 Identities=44% Similarity=0.749 Sum_probs=69.3
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
++++.|.|++++||+.+++|+|.+.+ +.|.|+|..... .. .+...+.|.+.+.||..++.+.++|.+
T Consensus 3 q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~----~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~ 69 (80)
T cd00298 3 QTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEE----EE--------RERSYGEFERSFELPEDVDPEKSKASL 69 (80)
T ss_pred EcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCC----Cc--------ceEeeeeEEEEEECCCCcCHHHCEEEE
Confidence 46789999999999999999999999 999999987762 11 344467899999999999999999999
Q ss_pred eCCEEEEEEec
Q 046909 106 ENGVLRITVPK 116 (150)
Q Consensus 106 ~~GvL~I~lPK 116 (150)
.+|+|+|++||
T Consensus 70 ~~~~l~i~l~K 80 (80)
T cd00298 70 ENGVLEITLPK 80 (80)
T ss_pred ECCEEEEEEcC
Confidence 99999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.40 E-value=3.6e-12 Score=82.42 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=62.8
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
++++.+.|++++||+++++++|.+++ +.|.|++ . .|.+.+.||..|+++..+|++
T Consensus 3 Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~---~---------------------~~~~~~~l~~~I~~e~~~~~~ 57 (78)
T cd06469 3 QTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF---P---------------------PYLFELDLAAPIDDEKSSAKI 57 (78)
T ss_pred ccCCEEEEEEEeCCCccccceEEEec-CEEEEcC---C---------------------CEEEEEeCcccccccccEEEE
Confidence 57889999999999999999999999 8898876 1 278899999999999999999
Q ss_pred eCCEEEEEEeccCc
Q 046909 106 ENGVLRITVPKLTE 119 (150)
Q Consensus 106 ~~GvL~I~lPK~~~ 119 (150)
.+|.|.|+|+|..+
T Consensus 58 ~~~~l~i~L~K~~~ 71 (78)
T cd06469 58 GNGVLVFTLVKKEP 71 (78)
T ss_pred eCCEEEEEEEeCCC
Confidence 99999999999764
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.14 E-value=6.8e-10 Score=71.68 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=65.2
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
++++.+.|.+.+||+.+++++|.+.+ +.|.|++.... .+.|...+.|+..|+++..++++
T Consensus 3 Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~~~ 62 (84)
T cd06463 3 QTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG-------------------GKEYLLEGELFGPIDPEESKWTV 62 (84)
T ss_pred ccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC-------------------CCceEEeeEccCccchhhcEEEE
Confidence 46789999999999999999999999 89999986431 13478889999999999999999
Q ss_pred eCCEEEEEEeccCc
Q 046909 106 ENGVLRITVPKLTE 119 (150)
Q Consensus 106 ~~GvL~I~lPK~~~ 119 (150)
.+|.|.|+|+|..+
T Consensus 63 ~~~~l~i~L~K~~~ 76 (84)
T cd06463 63 EDRKIEITLKKKEP 76 (84)
T ss_pred eCCEEEEEEEECCC
Confidence 99999999999875
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.03 E-value=1.9e-09 Score=79.75 Aligned_cols=75 Identities=20% Similarity=0.423 Sum_probs=57.7
Q ss_pred Cccc--CCCC-eEEEEEEcCCCCCCC-eEEEEee-CcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCC
Q 046909 22 SRLD--GAPI-AHVIALDILGMKKDE-VKIEVEE-NMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSA 96 (150)
Q Consensus 22 p~~d--e~~~-~~~i~~~lPG~~~ed-I~V~v~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 96 (150)
+.++ +.++ .++|.++|||+++++ |+|.+.. .+.|+|+. .. .|.+++.||..
T Consensus 92 ~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~--~~---------------------~~~krv~L~~~- 147 (177)
T PF05455_consen 92 IHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV--GE---------------------KYLKRVALPWP- 147 (177)
T ss_pred eeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec--CC---------------------ceEeeEecCCC-
Confidence 4455 5455 799999999999888 9999985 14455542 22 25678999966
Q ss_pred cccceEEEEeCCEEEEEEeccCcc
Q 046909 97 DLEHVKVHLENGVLRITVPKLTEE 120 (150)
Q Consensus 97 d~~~i~A~~~~GvL~I~lPK~~~~ 120 (150)
+.+.++|+|+||||+|++-+....
T Consensus 148 ~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 148 DPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred ccceeeEEEeCceEEEEEeecCCC
Confidence 688899999999999999987764
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.82 E-value=4e-08 Score=64.05 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=64.2
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
++++.+.|.+.+||+.+++++|.+.+ +.|.|++.... .+.|...+.|+..|+++..++++
T Consensus 4 Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~~~ 63 (84)
T cd06466 4 QTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG-------------------GSEYQLELDLFGPIDPEQSKVSV 63 (84)
T ss_pred ccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECCC-------------------CCeEEEecccccccCchhcEEEE
Confidence 67899999999999999999999999 89999876321 12477788999999999999999
Q ss_pred eCCEEEEEEeccCc
Q 046909 106 ENGVLRITVPKLTE 119 (150)
Q Consensus 106 ~~GvL~I~lPK~~~ 119 (150)
.+|.|.|+|.|...
T Consensus 64 ~~~~vei~L~K~~~ 77 (84)
T cd06466 64 LPTKVEITLKKAEP 77 (84)
T ss_pred eCeEEEEEEEcCCC
Confidence 99999999999764
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.43 E-value=1.3e-06 Score=70.45 Aligned_cols=67 Identities=21% Similarity=0.494 Sum_probs=59.1
Q ss_pred CCCCeEEEEEEcCCC-CCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEE
Q 046909 26 GAPIAHVIALDILGM-KKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVH 104 (150)
Q Consensus 26 e~~~~~~i~~~lPG~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 104 (150)
...+.++|++.|||+ +..+|+|.|.+ ..|.|...... |.-.+.||..||.+..+|.
T Consensus 258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~~----------------------y~L~l~LP~~V~~~~~~Ak 314 (328)
T PF08190_consen 258 GSPEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKPK----------------------YRLDLPLPYPVDEDNGKAK 314 (328)
T ss_pred CCCceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCCc----------------------eEEEccCCCcccCCCceEE
Confidence 567899999999999 88999999999 89999865322 6778999999999999999
Q ss_pred Ee--CCEEEEEEe
Q 046909 105 LE--NGVLRITVP 115 (150)
Q Consensus 105 ~~--~GvL~I~lP 115 (150)
|. .++|+|+||
T Consensus 315 f~~~~~~L~vtlp 327 (328)
T PF08190_consen 315 FDKKTKTLTVTLP 327 (328)
T ss_pred EccCCCEEEEEEE
Confidence 94 699999998
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.37 E-value=8.6e-06 Score=51.79 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=60.3
Q ss_pred Cccc--CCCCeEEEEEEcCCC--CCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCc
Q 046909 22 SRLD--GAPIAHVIALDILGM--KKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSAD 97 (150)
Q Consensus 22 p~~d--e~~~~~~i~~~lPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd 97 (150)
|+++ ++++.+.|.+.+++. ++++++|.+.+ +.|.|+..... + ..|...+.|...|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~---------~----------~~~~~~~~L~~~I~ 60 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGD---------G----------KEYLLEGELFGEID 60 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETT---------S----------CEEEEEEEBSS-BE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccC---------C----------ceEEEEEEEeeeEc
Confidence 3455 788999999999665 59999999999 89999965433 1 13666788999999
Q ss_pred ccceEEEEeCCEEEEEEec
Q 046909 98 LEHVKVHLENGVLRITVPK 116 (150)
Q Consensus 98 ~~~i~A~~~~GvL~I~lPK 116 (150)
++..+.++.++.|.|+|.|
T Consensus 61 ~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 61 PDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp CCCEEEEEETTEEEEEEEB
T ss_pred chhcEEEEECCEEEEEEEC
Confidence 9999999999999999987
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.04 E-value=7.6e-05 Score=51.07 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=63.1
Q ss_pred Cccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCccc
Q 046909 22 SRLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLE 99 (150)
Q Consensus 22 p~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 99 (150)
|+++ .+.+.+.|.+.+||+ ++++|.+.. +.|.|++.... .+ ..|...+.|...|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~--------~~----------~~y~~~~~L~~~I~pe 59 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG--------GG----------KKYEFDLEFYKEIDPE 59 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC--------CC----------eeEEEEeEhhhhcccc
Confidence 3556 788999999999998 889999999 89999985321 11 1256677899999999
Q ss_pred ceEEEEeCCEEEEEEeccC
Q 046909 100 HVKVHLENGVLRITVPKLT 118 (150)
Q Consensus 100 ~i~A~~~~GvL~I~lPK~~ 118 (150)
..+.++.++.|.|+|.|..
T Consensus 60 ~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 60 ESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ccEEEecCCeEEEEEEECC
Confidence 9999999999999999987
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.99 E-value=8.6e-05 Score=48.45 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=61.4
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
.+++.+.|++.++|+.++++.|.+.+ +.|.+++.... +. .|.-.+.|...|+++..+.+.
T Consensus 4 Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~---------~~----------~y~~~~~L~~~I~p~~s~~~v 63 (84)
T cd06489 4 QTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS---------GN----------DYSLKLHLLHPIVPEQSSYKI 63 (84)
T ss_pred ccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC---------CC----------cEEEeeecCceecchhcEEEE
Confidence 56788999999999999999999999 89999876422 11 255567899999999888888
Q ss_pred eCCEEEEEEeccCc
Q 046909 106 ENGVLRITVPKLTE 119 (150)
Q Consensus 106 ~~GvL~I~lPK~~~ 119 (150)
..+-+.|+|.|...
T Consensus 64 ~~~kiei~L~K~~~ 77 (84)
T cd06489 64 LSTKIEIKLKKTEA 77 (84)
T ss_pred eCcEEEEEEEcCCC
Confidence 89999999999753
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.86 E-value=0.00013 Score=47.47 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCCeEEEEEEcC-CCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEE
Q 046909 26 GAPIAHVIALDIL-GMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVH 104 (150)
Q Consensus 26 e~~~~~~i~~~lP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 104 (150)
++++.+.|.+.+| |+.++||+|.+.+ +.|.|+... . . +.-.-.|...|+++...-+
T Consensus 5 Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-~-----------~----------~~l~~~L~~~I~~~~s~w~ 61 (85)
T cd06467 5 QTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-G-----------E----------PLLDGELYAKVKVDESTWT 61 (85)
T ss_pred eeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-C-----------C----------ceEcCcccCceeEcCCEEE
Confidence 5678899999998 7899999999999 899988631 1 0 1122358889999998888
Q ss_pred EeC-CEEEEEEeccCc
Q 046909 105 LEN-GVLRITVPKLTE 119 (150)
Q Consensus 105 ~~~-GvL~I~lPK~~~ 119 (150)
+.+ ..|.|+|+|..+
T Consensus 62 ~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 62 LEDGKLLEITLEKRNE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 999 999999999864
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.67 E-value=0.00093 Score=44.12 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=60.0
Q ss_pred CCCCeEEEEEEcCCCCC---CCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEE-ECCCCCcccce
Q 046909 26 GAPIAHVIALDILGMKK---DEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQF-KMPMSADLEHV 101 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~---edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~-~LP~~vd~~~i 101 (150)
++++.+.|.+.+|+..+ ++++|.+.. +.|.|++.... +. .|.-.+ .|-..|+++..
T Consensus 8 Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---------~~----------~~~~~~~~L~~~I~~e~s 67 (92)
T cd06468 8 QSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---------GK----------NYRFTINRLLKKIDPEKS 67 (92)
T ss_pred cCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---------Cc----------EEEEEehHhhCccCcccc
Confidence 78899999999999976 999999999 89999874211 11 133345 38899999999
Q ss_pred EEEEeCCEEEEEEeccCc
Q 046909 102 KVHLENGVLRITVPKLTE 119 (150)
Q Consensus 102 ~A~~~~GvL~I~lPK~~~ 119 (150)
+..+..+-+.|+|.|..+
T Consensus 68 ~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 68 SFKVKTDRIVITLAKKKE 85 (92)
T ss_pred EEEEeCCEEEEEEEeCCC
Confidence 999999999999999864
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.67 E-value=0.00081 Score=44.30 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=61.6
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
.+++.+.|.+.+.|+.++++.+.+.+ +.|.|+..... + ..|...+.|-..|+++..+.+.
T Consensus 7 Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~----------~~y~~~l~L~~~I~~~~s~~~v 66 (87)
T cd06488 7 QTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG---------N----------KEFQLDIELWGVIDVEKSSVNM 66 (87)
T ss_pred eCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC---------C----------ceEEEEeeccceEChhHcEEEe
Confidence 78899999999999999999999998 88888754222 1 1266678899999999988888
Q ss_pred eCCEEEEEEeccCc
Q 046909 106 ENGVLRITVPKLTE 119 (150)
Q Consensus 106 ~~GvL~I~lPK~~~ 119 (150)
..+-+.|+|.|..+
T Consensus 67 ~~~kvei~L~K~~~ 80 (87)
T cd06488 67 LPTKVEIKLRKAEP 80 (87)
T ss_pred cCcEEEEEEEeCCC
Confidence 89999999999864
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.66 E-value=0.00058 Score=44.75 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCCCeEEEEEEcC-CCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEE
Q 046909 26 GAPIAHVIALDIL-GMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVH 104 (150)
Q Consensus 26 e~~~~~~i~~~lP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 104 (150)
.+.+.+.|.+.+| |+.++|++|.+.. +.|.|... . +. .+ ..-.|...|+++.-.-.
T Consensus 5 Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~--~---------~~----------~~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 5 QTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK--D---------QA----------PL-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred EeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC--C---------CC----------eE-EeCcccCcccccCcEEE
Confidence 5788999999996 9999999999999 88888642 1 00 01 23368889999998888
Q ss_pred EeCC-EEEEEEeccCc
Q 046909 105 LENG-VLRITVPKLTE 119 (150)
Q Consensus 105 ~~~G-vL~I~lPK~~~ 119 (150)
+++| .|.|+|.|..+
T Consensus 62 i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 62 IKENKSLEVSLIKKDE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 8777 79999999864
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.94 E-value=0.019 Score=39.39 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=58.1
Q ss_pred Cccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCccc
Q 046909 22 SRLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLE 99 (150)
Q Consensus 22 p~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 99 (150)
|+++ .+.+.+.|++.+|+ .+|++|.+++ +.|.++|... ++.. |.-.+.|=..|+++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~---------~g~~----------y~~~l~l~~~I~pe 59 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG---------DNVK----------IYNEIELYDRVDPN 59 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC---------CCcE----------EEEEEEeecccCcc
Confidence 5666 77889999999999 5899999999 8999998421 1111 34456777889999
Q ss_pred ceEEEEeCCEEEEEEeccCc
Q 046909 100 HVKVHLENGVLRITVPKLTE 119 (150)
Q Consensus 100 ~i~A~~~~GvL~I~lPK~~~ 119 (150)
..+-+...--+.|.|.|...
T Consensus 60 ~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 60 DSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred cCeEEeCCceEEEEEEeCCC
Confidence 87777667778889999864
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.93 E-value=0.0092 Score=39.96 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=55.2
Q ss_pred CCCCeEEEEEEcC-CCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEE
Q 046909 26 GAPIAHVIALDIL-GMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVH 104 (150)
Q Consensus 26 e~~~~~~i~~~lP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 104 (150)
.+.+.+.|.+.+| |+.+.|++|.+.. +.|.|... . ..+. .| .|...|+++.-.-+
T Consensus 12 QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~--g----------~~~l-----~G------~L~~~I~~destWt 67 (93)
T cd06494 12 QTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK--G----------QEVL-----KG------KLFDSVVADECTWT 67 (93)
T ss_pred eEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC--C----------EEEE-----cC------cccCccCcccCEEE
Confidence 7889999999998 8999999999999 88888742 1 0011 12 57788888988888
Q ss_pred EeCCE-EEEEEeccCc
Q 046909 105 LENGV-LRITVPKLTE 119 (150)
Q Consensus 105 ~~~Gv-L~I~lPK~~~ 119 (150)
+++|- |.|.|.|...
T Consensus 68 led~k~l~I~L~K~~~ 83 (93)
T cd06494 68 LEDRKLIRIVLTKSNR 83 (93)
T ss_pred EECCcEEEEEEEeCCC
Confidence 98875 8999999764
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.53 E-value=0.018 Score=47.36 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=64.1
Q ss_pred Cccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCccc
Q 046909 22 SRLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLE 99 (150)
Q Consensus 22 p~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 99 (150)
++.| .+++.++|.+.+.|+.++++.|.+.+ +.|.|+..... +. .|...+.|-..|+++
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~~----------~y~~~~~L~~~I~p~ 216 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG---------ED----------AYHLQPRLFGKIIPD 216 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC---------Cc----------ceeeccccccccccc
Confidence 3566 89999999999999999999999999 88888865322 11 245557888999999
Q ss_pred ceEEEEeCCEEEEEEeccCc
Q 046909 100 HVKVHLENGVLRITVPKLTE 119 (150)
Q Consensus 100 ~i~A~~~~GvL~I~lPK~~~ 119 (150)
..+.++.---+.|+|.|...
T Consensus 217 ~s~~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 217 KCKYEVLSTKIEIRLAKAEP 236 (356)
T ss_pred ccEEEEecceEEEEEecCCC
Confidence 99988888899999999875
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.20 E-value=0.022 Score=42.56 Aligned_cols=78 Identities=22% Similarity=0.223 Sum_probs=60.3
Q ss_pred Cccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCccc
Q 046909 22 SRLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLE 99 (150)
Q Consensus 22 p~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 99 (150)
++.| .+....+|++-.+|+.++|++|.+.. +.|.|..+... +. .|.-...|-..|.++
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~---------g~----------~~~l~~~L~~~I~pe 63 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPS---------GS----------EYNLQLKLYHEIIPE 63 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCC---------ch----------hhhhhHHhccccccc
Confidence 4667 89999999999999999999999998 88888765433 11 134344577788888
Q ss_pred ceEEEEeCCEEEEEEeccCc
Q 046909 100 HVKVHLENGVLRITVPKLTE 119 (150)
Q Consensus 100 ~i~A~~~~GvL~I~lPK~~~ 119 (150)
..+-+.----+.|+|+|...
T Consensus 64 ~~s~k~~stKVEI~L~K~~~ 83 (196)
T KOG1309|consen 64 KSSFKVFSTKVEITLAKAEI 83 (196)
T ss_pred ceeeEeeeeeEEEEeccccc
Confidence 87777777788999998544
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.10 E-value=0.082 Score=34.81 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=52.3
Q ss_pred CCCCeEEEEEEcC-C--CCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceE
Q 046909 26 GAPIAHVIALDIL-G--MKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVK 102 (150)
Q Consensus 26 e~~~~~~i~~~lP-G--~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 102 (150)
.+.+...|.+.|| | +++.||+|.+.. +.|.|.-.... .. + .=.|...|+.+.-.
T Consensus 5 QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~~------------~~--------i--~G~L~~~V~~des~ 61 (87)
T cd06492 5 QTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQP------------PI--------I--DGELYNEVKVEESS 61 (87)
T ss_pred eecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCCc------------eE--------E--eCcccCcccccccE
Confidence 3556788899986 3 889999999999 88888542111 11 1 12567888888888
Q ss_pred EEEeCC-EEEEEEeccCc
Q 046909 103 VHLENG-VLRITVPKLTE 119 (150)
Q Consensus 103 A~~~~G-vL~I~lPK~~~ 119 (150)
=.+++| .|.|+|-|...
T Consensus 62 Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 62 WLIEDGKVVTVNLEKINK 79 (87)
T ss_pred EEEeCCCEEEEEEEECCC
Confidence 889886 89999999854
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.26 E-value=0.49 Score=31.00 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=50.9
Q ss_pred CCCCeEEEEEEcCCC--CCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEE
Q 046909 26 GAPIAHVIALDILGM--KKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKV 103 (150)
Q Consensus 26 e~~~~~~i~~~lPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 103 (150)
.+++.++|.+-..+. .+.++.+.... +.|.|+-.... ..|...+.|=..|+.+. +.
T Consensus 5 Qt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~--------------------~~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 5 QTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGD--------------------KSYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred ECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCC--------------------ceEEEeeeccccCCCCc-EE
Confidence 678999999998864 55555566566 67888643211 12566678888888775 55
Q ss_pred EEe--CCEEEEEEeccCc
Q 046909 104 HLE--NGVLRITVPKLTE 119 (150)
Q Consensus 104 ~~~--~GvL~I~lPK~~~ 119 (150)
++. -|-+.|+|.|.++
T Consensus 63 ~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 63 RISTETGKIELVLKKKEP 80 (87)
T ss_pred EEcccCceEEEEEEcCCC
Confidence 554 8899999999764
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.46 E-value=0.53 Score=32.01 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCCCeEEEEEEcC-CC-CCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEE
Q 046909 26 GAPIAHVIALDIL-GM-KKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKV 103 (150)
Q Consensus 26 e~~~~~~i~~~lP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 103 (150)
.+-+.+.|.+.|| |. +..||.|.+.. ..|.|.-.... ...-+. .| .|...|+.+.-.-
T Consensus 11 QTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~--------~~~~~i-----~G------~L~~~V~~des~W 70 (102)
T cd06495 11 QDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG--------GEKVLM-----EG------EFTHKINTENSLW 70 (102)
T ss_pred eECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC--------CCceEE-----eC------cccCcccCccceE
Confidence 5778899999999 64 68899999999 88888754211 000111 12 4778888888888
Q ss_pred EEeCC-EEEEEEeccC
Q 046909 104 HLENG-VLRITVPKLT 118 (150)
Q Consensus 104 ~~~~G-vL~I~lPK~~ 118 (150)
.+++| .|.|+|-|..
T Consensus 71 tled~~~l~I~L~K~~ 86 (102)
T cd06495 71 SLEPGKCVLLSLSKCS 86 (102)
T ss_pred EEeCCCEEEEEEEECC
Confidence 89986 5899999974
No 42
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=87.33 E-value=7.5 Score=27.63 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=38.3
Q ss_pred CeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEeCCEEEEE
Q 046909 44 EVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLENGVLRIT 113 (150)
Q Consensus 44 dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~ 113 (150)
.+++...+ +.|.|+..... ..-...+..... ...-.-.+.||.+...++|+....+|-++|.
T Consensus 86 ~~~~~~~~-~~L~I~~~~~~------~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 86 KPEISVEG-GTLTIKSKDRE------SFFFKGFNFNNS-DNKSKITIYLPKDYKLDKIDIKTSSGDITIE 147 (166)
T ss_pred EEEEEEcC-CEEEEEEeccc------ccccceEEEccc-CCCcEEEEEECCCCceeEEEEEeccccEEEE
Confidence 57777777 78888776222 000112222111 2344566888988888888888888877765
No 43
>PF14913 DPCD: DPCD protein family
Probab=84.74 E-value=7.1 Score=29.57 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=52.9
Q ss_pred CCCCeEEEEE-EcCCCCCCCeEEEEeeC-cEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCC------CCc
Q 046909 26 GAPIAHVIAL-DILGMKKDEVKIEVEEN-MVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPM------SAD 97 (150)
Q Consensus 26 e~~~~~~i~~-~lPG~~~edI~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~------~vd 97 (150)
++..+|.-++ +|| +.++-.+|.++++ +.++|+-.-+. |.+.|.+|+ ..+
T Consensus 93 dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNKK----------------------YyKk~~IPDl~R~~l~l~ 149 (194)
T PF14913_consen 93 DTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNKK----------------------YYKKFSIPDLDRCGLPLE 149 (194)
T ss_pred cCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCcc----------------------ceeEecCCcHHhhCCCcc
Confidence 8888898888 566 5677777777652 46888754333 777899995 347
Q ss_pred ccceEEEEeCCEEEEEEeccC
Q 046909 98 LEHVKVHLENGVLRITVPKLT 118 (150)
Q Consensus 98 ~~~i~A~~~~GvL~I~lPK~~ 118 (150)
.+.++..+.|..|.|+..|-.
T Consensus 150 ~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 150 QSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hhhceeeeecCeEEEEecCcH
Confidence 788888899999999988754
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=84.74 E-value=2.7 Score=27.68 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=30.2
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEeccCcc
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKLTEE 120 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~~ 120 (150)
.|.-...|| +++.+.|+.++.+|.|+|..-+....
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~ 43 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRY 43 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccc
Confidence 477788999 89999999999999999999876543
No 45
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=81.99 E-value=3.1 Score=26.98 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEeccC
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKLT 118 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 118 (150)
.|.-.+.|| ++.++.|+.++.||.|+|.--+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 478889998 899999999999999999987643
No 46
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=81.85 E-value=4.2 Score=26.55 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=30.9
Q ss_pred eEEEEEEECCCCCcccceEEEEeCCEEEEEEeccCcc
Q 046909 84 GKFWRQFKMPMSADLEHVKVHLENGVLRITVPKLTEE 120 (150)
Q Consensus 84 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~~ 120 (150)
..|.-.+.|| ++..+.|+..++++.|+|+-.+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 3578889999 79999999999999999998776554
No 47
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=81.62 E-value=3.5 Score=26.87 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=28.8
Q ss_pred eEEEEEEECCCCCcccceEEEEeCCEEEEEEecc
Q 046909 84 GKFWRQFKMPMSADLEHVKVHLENGVLRITVPKL 117 (150)
Q Consensus 84 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 117 (150)
..|.-.+.|| +++++.|+..+.+|.|+|+--+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3578889999 99999999999999999998654
No 48
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=81.58 E-value=8.9 Score=28.66 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCCCeEEEEEEcC-CC-CCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEE
Q 046909 26 GAPIAHVIALDIL-GM-KKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKV 103 (150)
Q Consensus 26 e~~~~~~i~~~lP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 103 (150)
.+=..+.|.+.+| |+ +..+|.|.+.. ..|.|.-+.... +. -| .|...|+.+...-
T Consensus 25 QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~-----------il-----dG------~L~~~vk~des~W 81 (179)
T KOG2265|consen 25 QTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPP-----------IL-----DG------ELSHSVKVDESTW 81 (179)
T ss_pred eehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCc-----------ee-----cC------ccccccccccceE
Confidence 3444566776676 88 88999999999 787776442220 11 12 3567788888888
Q ss_pred EEeCCEEEEEEeccCc
Q 046909 104 HLENGVLRITVPKLTE 119 (150)
Q Consensus 104 ~~~~GvL~I~lPK~~~ 119 (150)
.+++|.+.|++-++..
T Consensus 82 tiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 82 TIEDGKMIVILLKKSN 97 (179)
T ss_pred EecCCEEEEEEeeccc
Confidence 9999987777776655
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=81.33 E-value=3.9 Score=26.37 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEecc
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKL 117 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 117 (150)
.|.-.+.|| +++++.|+..+.+|.|+|..-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 588889999 99999999999999999998654
No 50
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=80.85 E-value=4.6 Score=26.25 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=29.7
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEeccCc
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKLTE 119 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~ 119 (150)
.|.-.+.|| +++++.|+-.+++|.|+|+--+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~ 41 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVR 41 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 477788999 8999999999999999999976553
No 51
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=80.71 E-value=3.9 Score=27.16 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=26.5
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEeeCcEEEEEE
Q 046909 29 IAHVIALDIL-GMKKDEVKIEVEENMVLRVSG 59 (150)
Q Consensus 29 ~~~~i~~~lP-G~~~edI~V~v~~~~~L~I~g 59 (150)
.+|.=.+.|| +++.+.|+-.+..+|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 3566688999 899999999999559999986
No 52
>PRK10743 heat shock protein IbpA; Provisional
Probab=80.53 E-value=7.9 Score=27.60 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=27.6
Q ss_pred EEEEEECCCCCcccceEEEEeCCEEEEEEeccCc
Q 046909 86 FWRQFKMPMSADLEHVKVHLENGVLRITVPKLTE 119 (150)
Q Consensus 86 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~ 119 (150)
|.-...|| +++.+.|+..+++|+|+|..-+...
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECcc
Confidence 56667798 8999999999999999999876543
No 53
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=78.00 E-value=5.8 Score=25.31 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=30.3
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEeccCc
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKLTE 119 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~ 119 (150)
.|.-.+.|| ++..+.|+..++++.|+|..-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 588899999 6999999999999999999887654
No 54
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=77.69 E-value=3.8 Score=26.67 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=26.0
Q ss_pred CeEEEEEEcCCCCCCCeEEEEeeCcEEEEEE
Q 046909 29 IAHVIALDILGMKKDEVKIEVEENMVLRVSG 59 (150)
Q Consensus 29 ~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g 59 (150)
+.|.-.+.||.++.+.++-.+.+ |.|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~d-GvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYEN-GVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEEC-CEEEEEE
Confidence 45677789999999999999999 9999975
No 55
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=77.51 E-value=7 Score=25.24 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEeccC
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKLT 118 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 118 (150)
.|.-.+.|| .++++.|+-++.+|.|+|.--+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477789999 999999999999999999987643
No 56
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=76.81 E-value=4.5 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.7
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEEeeCcEEEEEEE
Q 046909 28 PIAHVIALDIL-GMKKDEVKIEVEENMVLRVSGE 60 (150)
Q Consensus 28 ~~~~~i~~~lP-G~~~edI~V~v~~~~~L~I~g~ 60 (150)
...|.-.+.|| +++.+.++..+.+ |.|.|...
T Consensus 55 ~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~p 87 (88)
T cd06464 55 YGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLP 87 (88)
T ss_pred CcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEEc
Confidence 68899999999 7899999999999 99999853
No 57
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=75.82 E-value=12 Score=26.90 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=27.3
Q ss_pred EEEEEECCCCCcccceEEEEeCCEEEEEEeccC
Q 046909 86 FWRQFKMPMSADLEHVKVHLENGVLRITVPKLT 118 (150)
Q Consensus 86 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 118 (150)
|.-...|| +++.+.|...+++|.|+|+--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 66677888 899999999999999999987654
No 58
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=75.56 E-value=1.4 Score=35.45 Aligned_cols=80 Identities=9% Similarity=-0.059 Sum_probs=61.9
Q ss_pred Cccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCccc
Q 046909 22 SRLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLE 99 (150)
Q Consensus 22 p~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 99 (150)
.++| ++.....|-+.-|-+..++|++-+++ |+|.|+-+... .. --|.-.+.|-..|+++
T Consensus 177 i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~---------~~---------~~~~~~~~Ly~ev~P~ 237 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRR---------LR---------LWNDITISLYKEVYPD 237 (368)
T ss_pred eeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccc---------cc---------hHHHhhhhhhhhcCcc
Confidence 3566 89999999999999999999999999 89999976544 11 1134456777888888
Q ss_pred ceEEEEeCCEEEEEEeccCcc
Q 046909 100 HVKVHLENGVLRITVPKLTEE 120 (150)
Q Consensus 100 ~i~A~~~~GvL~I~lPK~~~~ 120 (150)
...-+.---++.|++.|....
T Consensus 238 ~~s~k~fsK~~e~~l~KV~~v 258 (368)
T COG5091 238 IRSIKSFSKRVEVHLRKVEMV 258 (368)
T ss_pred hhhhhhcchhheehhhhhhhh
Confidence 877666668888998887754
No 59
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=75.20 E-value=7.1 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEecc
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKL 117 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 117 (150)
.|.-.+.|| +++++.|+..+.+|.|+|.--+.
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 578889998 99999999999999999998543
No 60
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=74.00 E-value=5.5 Score=25.94 Aligned_cols=31 Identities=29% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEEeeCcEEEEEE
Q 046909 28 PIAHVIALDIL-GMKKDEVKIEVEENMVLRVSG 59 (150)
Q Consensus 28 ~~~~~i~~~lP-G~~~edI~V~v~~~~~L~I~g 59 (150)
...|.-.+.|| +++.+.|+-.+.+ |.|.|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLEN-GVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEEC-CEEEEEe
Confidence 46888899999 7899999999999 9999974
No 61
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=73.52 E-value=11 Score=24.46 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=29.2
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEeccC
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKLT 118 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 118 (150)
.|.-.+.|| +++.+.|+..+.++.|+|+--+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 588889999 999999999999999999987643
No 62
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=73.21 E-value=11 Score=24.71 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=27.9
Q ss_pred eEEEEEEECCCCCcccceEEEEeCCEEEEEEecc
Q 046909 84 GKFWRQFKMPMSADLEHVKVHLENGVLRITVPKL 117 (150)
Q Consensus 84 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 117 (150)
..|.-.+.|| +++.+.|+-.++++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 3578889999 89999999999999999998887
No 63
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=73.11 E-value=10 Score=24.72 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=29.4
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEeccCc
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVPKLTE 119 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~ 119 (150)
.|.-.+.|| .+.++.|+.+++++.|+|.--+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 477788998 8999999999999999999876543
No 64
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=72.76 E-value=4.8 Score=29.96 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=28.6
Q ss_pred EEEEEEcC-CCCCCCeEEEEeeCcEEEEEEEEec
Q 046909 31 HVIALDIL-GMKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 31 ~~i~~~lP-G~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
|.=+.-|| ||+++.|.-.++.+|.|+|+|.+..
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 33467899 9999999999988899999998776
No 65
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=68.49 E-value=12 Score=22.34 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCCCCCCeEEEEeeCcEEEEEEEEec
Q 046909 38 LGMKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 38 PG~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
++++..+|+|.+.+ +.+.++|....
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESS
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcH
Confidence 36777799999999 99999999866
No 66
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=67.05 E-value=5.8 Score=24.29 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=12.1
Q ss_pred cceEEEEeCCEEEEEEe
Q 046909 99 EHVKVHLENGVLRITVP 115 (150)
Q Consensus 99 ~~i~A~~~~GvL~I~lP 115 (150)
..|.|.|+||+|.-.=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 46899999999986533
No 67
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=66.28 E-value=50 Score=26.39 Aligned_cols=79 Identities=19% Similarity=0.102 Sum_probs=64.7
Q ss_pred ccc--CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccc
Q 046909 23 RLD--GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEH 100 (150)
Q Consensus 23 ~~d--e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 100 (150)
+.| .++..++|.+..-|..++.-.|..++ -.|.|+-.... . -.+|...+.|=.-|+++.
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~--------g----------na~fd~d~kLwgvvnve~ 276 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGF--------G----------NASFDLDYKLWGVVNVEE 276 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecC--------C----------Cceeeccceeeeeechhh
Confidence 556 89999999999999999999999988 78888765433 1 124777777777889999
Q ss_pred eEEEEeCCEEEEEEeccCcc
Q 046909 101 VKVHLENGVLRITVPKLTEE 120 (150)
Q Consensus 101 i~A~~~~GvL~I~lPK~~~~ 120 (150)
..+.+-.--+.|+|+|.++.
T Consensus 277 s~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 277 SSVVMGETKVEISLKKAEPG 296 (320)
T ss_pred ceEEeecceEEEEEeccCCC
Confidence 99999999999999999875
No 68
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=65.92 E-value=34 Score=25.96 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=55.3
Q ss_pred cccCCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEE-ECCCCCcccce
Q 046909 23 RLDGAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQF-KMPMSADLEHV 101 (150)
Q Consensus 23 ~~de~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~-~LP~~vd~~~i 101 (150)
.+|..++-+.+.+.|-||..+++.|++.. +.|-+..+.-. +.+ |.-.+ .|-..|++++-
T Consensus 78 gWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlq---------GK~----------y~~~vnnLlk~I~vEks 137 (224)
T KOG3260|consen 78 GWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQ---------GKN----------YRMIVNNLLKPISVEKS 137 (224)
T ss_pred CccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecC---------Ccc----------eeeehhhhccccChhhc
Confidence 34577788889999999999999999999 88888754222 222 33222 34567888888
Q ss_pred EEEEeCCEEEEEEeccCc
Q 046909 102 KVHLENGVLRITVPKLTE 119 (150)
Q Consensus 102 ~A~~~~GvL~I~lPK~~~ 119 (150)
.-..+-....|.+.|.+.
T Consensus 138 ~~kvKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 138 SKKVKTDTVLILCKKVEN 155 (224)
T ss_pred ccccccceEEEeehhhhc
Confidence 877887777788866554
No 69
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=64.12 E-value=34 Score=25.58 Aligned_cols=45 Identities=29% Similarity=0.536 Sum_probs=31.9
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEeCCEEEEEEe
Q 046909 42 KDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLENGVLRITVP 115 (150)
Q Consensus 42 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 115 (150)
|++++|++.+ +.++|+|.+.. ..+.|.-+ .++..+++|.|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G~----------------------L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKGE----------------------LTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCeE----------------------EEEEecCC------cEEEEEECCEEEEEEC
Confidence 6788999999 89999987443 55544322 4555678888888755
No 70
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=62.46 E-value=42 Score=24.83 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=31.6
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEeCCEEEEEEe
Q 046909 42 KDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLENGVLRITVP 115 (150)
Q Consensus 42 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 115 (150)
|++++|++.+ +.|+|+|.+.. ..+.|. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G~----------------------L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKGE----------------------VTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCeE----------------------EEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 5788999999 89999987443 555443 22 3555678888888754
No 71
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=60.79 E-value=27 Score=21.22 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEec
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
=..+.|.|++..||+..-.-.|.+..+....|+...+.
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~~ 69 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLEP 69 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEEE
Confidence 34778999999999999888888876567777766443
No 72
>PRK10568 periplasmic protein; Provisional
Probab=60.63 E-value=23 Score=26.82 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred cCCCCCCCeEEEEeeCcEEEEEEEEec
Q 046909 37 ILGMKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 37 lPG~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
-++++..+|+|.+.+ |.+.++|....
T Consensus 72 ~~~i~~~~I~V~v~~-G~V~L~G~V~s 97 (203)
T PRK10568 72 HDNIKSTDISVKTHQ-KVVTLSGFVES 97 (203)
T ss_pred CCCCCCCceEEEEEC-CEEEEEEEeCC
Confidence 367778899999999 99999999875
No 73
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.14 E-value=23 Score=25.12 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=28.1
Q ss_pred EEEEEECCCCCcccceEEEEeCCEEEEEEeccC
Q 046909 86 FWRQFKMPMSADLEHVKVHLENGVLRITVPKLT 118 (150)
Q Consensus 86 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 118 (150)
|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 66677888 899999999999999999998876
No 74
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=59.83 E-value=30 Score=21.29 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=28.1
Q ss_pred CeEEEEEEcCC-CCCCCeEEEEeeCcEEEEEEEEec
Q 046909 29 IAHVIALDILG-MKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 29 ~~~~i~~~lPG-~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
+.|.+.++||+ +++++.+..+.+ +.|.|+-.+..
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 56889999995 699999999999 89999865433
No 75
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=58.56 E-value=47 Score=24.57 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=31.2
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEeCCEEEEEEe
Q 046909 42 KDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLENGVLRITVP 115 (150)
Q Consensus 42 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 115 (150)
|++|+|++.+ +.|+|+|.... ..+.| |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G~----------------------l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKGE----------------------LSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCeE----------------------EEEEc--CC-----CeEEEEECCEEEEEec
Confidence 5789999998 89999987443 55555 43 3445567887777754
No 76
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=54.30 E-value=14 Score=26.92 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCCCcccceEEEEeCCEEEEEEeccCc---ccCCCCeEEEeeec
Q 046909 93 PMSADLEHVKVHLENGVLRITVPKLTE---EKRRQPKVISINDE 133 (150)
Q Consensus 93 P~~vd~~~i~A~~~~GvL~I~lPK~~~---~~~~~~~~I~I~~~ 133 (150)
-+.+..+.-.+.|.||||+|.|+-.-. -++++.+.|=....
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg~~GTYViNKQ~PnkQIWlSSP 109 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLGSVGTYVINKQPPNKQIWLSSP 109 (156)
T ss_pred HhhcCccccccccccceEEEEecCceeEEecCCCCcceeeeeCC
Confidence 344555666788999999999883211 02444555544444
No 77
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=54.05 E-value=54 Score=24.30 Aligned_cols=44 Identities=23% Similarity=0.405 Sum_probs=30.7
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEeCCEEEEEEe
Q 046909 42 KDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLENGVLRITVP 115 (150)
Q Consensus 42 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 115 (150)
|++|+|++.+ +.|+|+|.... ..+.| |.. +...++++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G~----------------------l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKGE----------------------LSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE----------------------EEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 5789999999 89999987443 56555 432 444567787777644
No 78
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=53.63 E-value=51 Score=24.85 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEeCCEEEEEEe
Q 046909 42 KDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLENGVLRITVP 115 (150)
Q Consensus 42 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 115 (150)
|++++|++.+ +.|+|+|.... ..+.|+=| . ..+....++|.|.|.-+
T Consensus 13 P~~V~V~i~~-~~v~VkGp~G~----------------------L~~~~~~~-~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKYGE----------------------LTRSFRHL-P---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECCCce----------------------EEEEecCC-C---ceEEEEeCCCEEEEEeC
Confidence 6899999999 89999987433 55544321 1 24556678888777754
No 79
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=51.74 E-value=56 Score=20.37 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.0
Q ss_pred EEEEEEECCCCCcccceEEEEeCCEEEEEEe
Q 046909 85 KFWRQFKMPMSADLEHVKVHLENGVLRITVP 115 (150)
Q Consensus 85 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 115 (150)
...-.|.+|..+..+.++..+.+.-|+|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3566788999999999999999999999886
No 80
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=46.49 E-value=1.2e+02 Score=22.68 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=49.3
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 105 (150)
++.+-+.+++.++- ..+..|.++. ..|+++|+.... . + .|...|.|=..||+++.+-+-
T Consensus 14 qr~~~vyltv~Ved--~~d~~v~~e~-~~l~fs~k~~~d--------~--~--------~~~~~ief~~eIdpe~sk~k~ 72 (180)
T KOG3158|consen 14 QRRDLVYLTVCVED--AKDVHVNLEP-SKLTFSCKSGAD--------N--H--------KYENEIEFFDEIDPEKSKHKR 72 (180)
T ss_pred hhcCeEEEEEEecc--Cccceeeccc-cEEEEEeccCCC--------c--e--------eeEEeeehhhhcCHhhccccc
Confidence 67788889999875 4567777888 789999985441 1 1 256668888899999887665
Q ss_pred eCCEEEEEEeccC
Q 046909 106 ENGVLRITVPKLT 118 (150)
Q Consensus 106 ~~GvL~I~lPK~~ 118 (150)
. +-+...++++.
T Consensus 73 ~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 73 T-SRSIFCILRKK 84 (180)
T ss_pred c-ceEEEEEEEcc
Confidence 5 54444444443
No 81
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=45.88 E-value=66 Score=23.89 Aligned_cols=21 Identities=19% Similarity=0.656 Sum_probs=16.9
Q ss_pred CCCeEEEEeeCcEEEEEEEEec
Q 046909 42 KDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 42 ~edI~V~v~~~~~L~I~g~~~~ 63 (150)
|++|+|++.+ +.|+|+|....
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G~ 32 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKGT 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 5788899999 89999987444
No 82
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=43.72 E-value=26 Score=23.83 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.1
Q ss_pred cceEEEEeCCEEEEEEec
Q 046909 99 EHVKVHLENGVLRITVPK 116 (150)
Q Consensus 99 ~~i~A~~~~GvL~I~lPK 116 (150)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 467788899999999983
No 83
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=42.68 E-value=32 Score=23.42 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.7
Q ss_pred cceEEEEeCCEEEEEEecc
Q 046909 99 EHVKVHLENGVLRITVPKL 117 (150)
Q Consensus 99 ~~i~A~~~~GvL~I~lPK~ 117 (150)
..+.+.+.+|||+|+++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 3578999999999999643
No 84
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=42.07 E-value=88 Score=23.55 Aligned_cols=21 Identities=24% Similarity=0.609 Sum_probs=17.4
Q ss_pred CCCeEEEEeeCcEEEEEEEEec
Q 046909 42 KDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 42 ~edI~V~v~~~~~L~I~g~~~~ 63 (150)
|++++|++.+ +.|+|+|.+..
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCcE
Confidence 5789999999 89999987444
No 85
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=41.32 E-value=42 Score=24.01 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.4
Q ss_pred CCCCCCCeEEEEeeCcEEEEEEEEec
Q 046909 38 LGMKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 38 PG~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
.|+...+|+|.+.+ +.++++|....
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCC
Confidence 47888899999999 99999999876
No 86
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=40.85 E-value=27 Score=23.75 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=20.8
Q ss_pred eEEEEeCCEEEEEEeccCcc---cCCCCeEEEeeec
Q 046909 101 VKVHLENGVLRITVPKLTEE---KRRQPKVISINDE 133 (150)
Q Consensus 101 i~A~~~~GvL~I~lPK~~~~---~~~~~~~I~I~~~ 133 (150)
+.+.+.+|||+|+++....= ++++.+.|=+...
T Consensus 29 ~D~e~~~gVLti~f~~~~~~VINkQ~p~~QIWlas~ 64 (105)
T PRK00446 29 IDCERNGGVLTLTFENGSKIIINRQEPLHELWLAAK 64 (105)
T ss_pred eeeeccCCEEEEEECCCCEEEEeCCCchhheeEecC
Confidence 67888999999999864321 2334455544443
No 87
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=39.62 E-value=28 Score=23.57 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.3
Q ss_pred ceEEEEeCCEEEEEEec
Q 046909 100 HVKVHLENGVLRITVPK 116 (150)
Q Consensus 100 ~i~A~~~~GvL~I~lPK 116 (150)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36777889999999984
No 88
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=39.51 E-value=1.3e+02 Score=20.75 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=31.5
Q ss_pred EEEEEEECCCCC-cccceEEEEeCCEEEEEEeccCcccCCCCeEEEeeecc
Q 046909 85 KFWRQFKMPMSA-DLEHVKVHLENGVLRITVPKLTEEKRRQPKVISINDEL 134 (150)
Q Consensus 85 ~f~r~~~LP~~v-d~~~i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I~~~~ 134 (150)
.|..-|....++ +...++-.+++.+|-...|+. ..++|.|+.+.
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~------~~~~I~Vq~Ge 89 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKV------GAEKITVQSGK 89 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeE------EEEEEEEEeCC
Confidence 566666677666 777788888888776656655 46789999873
No 89
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=37.95 E-value=1.2e+02 Score=19.98 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=27.6
Q ss_pred eEEEEEEECCCCCcccceEEEEeCCEEEEEE
Q 046909 84 GKFWRQFKMPMSADLEHVKVHLENGVLRITV 114 (150)
Q Consensus 84 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~l 114 (150)
....-.|+||.++....+...+...-|+|.+
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 3466778999999999999999999999998
No 90
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=34.67 E-value=81 Score=23.72 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=14.0
Q ss_pred CCeEEEEeeCcEEEEEEEEec
Q 046909 43 DEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 43 edI~V~v~~~~~L~I~g~~~~ 63 (150)
..+.+.... +.+.|+|..+.
T Consensus 131 ~~i~v~~~~-~~V~V~Gtlkt 150 (188)
T PRK13726 131 TSVRVWPQY-GRVDIRGVLKT 150 (188)
T ss_pred eeEEEccCC-CEEEEEEEEEE
Confidence 456666666 78888887666
No 91
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=32.53 E-value=34 Score=22.92 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=12.9
Q ss_pred EEEEeCCEEEEEEecc
Q 046909 102 KVHLENGVLRITVPKL 117 (150)
Q Consensus 102 ~A~~~~GvL~I~lPK~ 117 (150)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 5667899999999644
No 92
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=30.07 E-value=26 Score=23.01 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=16.9
Q ss_pred ccchhHHHHhhccCCCCCCcccCCCCeEEEEEEcCCCCCCCeEEEEee
Q 046909 4 ARSHFFDVMFAMTEDPFRSRLDGAPIAHVIALDILGMKKDEVKIEVEE 51 (150)
Q Consensus 4 ~~~~~~d~~~~~~~~~~~p~~de~~~~~~i~~~lPG~~~edI~V~v~~ 51 (150)
+..++..++...+.+-|.-.+.=++..|...++=|-.........+++
T Consensus 4 ~fd~~~~d~D~~~~~~fg~~~~InG~~~~~v~d~~~~~~~~~~~~v~g 51 (95)
T PF13856_consen 4 FFDQLAADIDAVILDEFGEEHTINGKPYRAVFDEPELEERGKRVGVEG 51 (95)
T ss_dssp HHHHHHHHHHHHHHHHH-EEEEETTEEEEEEEGGGT------------
T ss_pred HHHHHHHHHHHHHHHHhCCeEEECCEEEEEEECCchhhhccccccccC
Confidence 333444444444444444333344566666666554443333224443
No 93
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=29.30 E-value=44 Score=20.46 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=18.8
Q ss_pred CCCCCeEEEEeeCcEEEEEEEEec
Q 046909 40 MKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 40 ~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
|+.+.|.+.... +.|.|.|+.=.
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L~ 45 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGLV 45 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceEE
Confidence 577888888888 89999998544
No 94
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=28.37 E-value=1.4e+02 Score=23.07 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=27.5
Q ss_pred EEEeeCcEEEEEEEEecCCCccccccCceEE------EeeeeeeEEEEEEECCCC
Q 046909 47 IEVEENMVLRVSGERKSDDYYKEGVEGEKRH------RAESTFGKFWRQFKMPMS 95 (150)
Q Consensus 47 V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~------~~e~~~g~f~r~~~LP~~ 95 (150)
|.+.+ +.|+|++.+.... .......|. .....||.|+-+++||..
T Consensus 60 v~v~~-G~L~i~a~~~~~~---~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVED-GNLVLSATRHPGT---ELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEEC-CEEEEEEEcCCCC---cCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 56678 8999999766520 000111111 224567999999999953
No 95
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=27.97 E-value=75 Score=19.93 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=16.8
Q ss_pred eCCEEEEEEeccCcccCCCCeEEEeeec
Q 046909 106 ENGVLRITVPKLTEEKRRQPKVISINDE 133 (150)
Q Consensus 106 ~~GvL~I~lPK~~~~~~~~~~~I~I~~~ 133 (150)
.+|.|++.+||+.-+ ...++++..
T Consensus 9 ~~g~l~~YvpKKDLE----E~Vv~~e~~ 32 (67)
T TIGR02934 9 RAGELSAYVPKKDLE----EVIVSVEKE 32 (67)
T ss_pred CCCCEEEEEECCcch----hheeeeecC
Confidence 467899999998875 445565544
No 96
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=26.65 E-value=1.8e+02 Score=18.60 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=26.2
Q ss_pred ccCceEEEeeeeeeEEEEEEECCCCCcccc-eEEEEeCC-EEEEE
Q 046909 71 VEGEKRHRAESTFGKFWRQFKMPMSADLEH-VKVHLENG-VLRIT 113 (150)
Q Consensus 71 ~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~-i~A~~~~G-vL~I~ 113 (150)
...+.|......+--|.|.|.+|+...+.. +.-.|.+| |-.|+
T Consensus 28 ~~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~ 72 (85)
T PF14814_consen 28 DRPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQ 72 (85)
T ss_dssp -STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEE
T ss_pred CCCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEE
Confidence 345566666666667899999999875544 67778777 43454
No 97
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=25.64 E-value=55 Score=21.33 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=19.8
Q ss_pred CCCCCCeEEEEeeCcEEEEEEEEec
Q 046909 39 GMKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 39 G~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
-|+.+.|.+.... +.|.|+|+.=.
T Consensus 40 ~y~~~~I~l~t~~-G~l~I~G~~L~ 63 (85)
T TIGR02856 40 VFSPEEVKLNSTN-GKITIEGKNFV 63 (85)
T ss_pred EECCCEEEEEcCc-eEEEEEcccEE
Confidence 4688899999999 89999998544
No 98
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=25.63 E-value=1.7e+02 Score=18.04 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=27.6
Q ss_pred eEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCC
Q 046909 45 VKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPM 94 (150)
Q Consensus 45 I~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~ 94 (150)
.++.+.+ +.|.|+|.......+.....+...+..+. .=.|...+.+|.
T Consensus 16 ~~~~v~~-~kv~v~G~l~~~ilY~~~~~~~~v~~~~~-~ipF~~~ie~~g 63 (87)
T PF12673_consen 16 TEIKVID-DKVIVEGELNVKILYVSEDDEQPVYSVEQ-EIPFSQFIELPG 63 (87)
T ss_pred EEEEEEC-CEEEEEEEEEEEEEEEeCCCCCCEEEEEE-EeeeeEEEECCC
Confidence 3456677 78999998776433223333333333332 236888888863
No 99
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=25.42 E-value=1.3e+02 Score=22.18 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=13.4
Q ss_pred CCeEEEEeeCcEEEEEEEEec
Q 046909 43 DEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 43 edI~V~v~~~~~L~I~g~~~~ 63 (150)
+++.+...+ +.+.|+|..+.
T Consensus 131 ~~i~~d~~~-~~V~V~G~l~t 150 (187)
T PF05309_consen 131 KSIEVDPET-LTVFVTGTLKT 150 (187)
T ss_pred eEEEEecCC-CEEEEEEEEEE
Confidence 566666666 67777777554
No 100
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=25.16 E-value=2.9e+02 Score=20.56 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=28.6
Q ss_pred CCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEE-eeeeeeEEEEEEECCCC
Q 046909 41 KKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHR-AESTFGKFWRQFKMPMS 95 (150)
Q Consensus 41 ~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~e~~~g~f~r~~~LP~~ 95 (150)
++++++|+ + +.|+|++.+.... ...-.+..+.. ....+|.|+-++.+|..
T Consensus 30 ~~~nv~v~--~-g~L~l~~~~~~~~--~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEFS--D-GGLALTLTNDTYG--EKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEEE--C-CeEEEEEeCCcCC--CCccccceEEECceEEeeEEEEEEEcCCC
Confidence 35665554 6 7899998765410 00111222222 23468999999999853
No 101
>KOG4356 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.13 E-value=13 Score=30.26 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=49.7
Q ss_pred CCCCeEEEEEEcCCCCC-CCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEE
Q 046909 26 GAPIAHVIALDILGMKK-DEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVH 104 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~-edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 104 (150)
|..+.....++||++.. ...+..+.+ ..|.|.+.+.. |.-...+|..++.....|.
T Consensus 237 e~p~~i~~e~~lp~~n~~~~~sl~v~e-~ri~i~~~~~~----------------------y~l~~~~~~~~~~~~~~a~ 293 (310)
T KOG4356|consen 237 EAPDEIEAEIDLPNYNSMQEFSLLVGE-DRIVIETRKQG----------------------YRLNLNIPYIIDQDRAPAL 293 (310)
T ss_pred cCcchhhhhhhcccchhhhccccccCC-cceEeccCccc----------------------eeeccccccccCcccchhh
Confidence 77778888888998865 355555665 56777654332 5555778889999999999
Q ss_pred Ee--CCEEEEEEecc
Q 046909 105 LE--NGVLRITVPKL 117 (150)
Q Consensus 105 ~~--~GvL~I~lPK~ 117 (150)
|. ---|.|+||-.
T Consensus 294 Fd~~~~al~i~~P~~ 308 (310)
T KOG4356|consen 294 FDKTTKALHITIPVV 308 (310)
T ss_pred HHHHHHhhheecccc
Confidence 84 45788888854
No 102
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=24.70 E-value=1.9e+02 Score=22.38 Aligned_cols=46 Identities=7% Similarity=0.057 Sum_probs=24.4
Q ss_pred CCCeEEEEe-eCcEEEEEEEEecCCCccccccCceEEEeee---e----eeEEEEEEECCC
Q 046909 42 KDEVKIEVE-ENMVLRVSGERKSDDYYKEGVEGEKRHRAES---T----FGKFWRQFKMPM 94 (150)
Q Consensus 42 ~edI~V~v~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~---~----~g~f~r~~~LP~ 94 (150)
++++ .+. + +.|+|++.+.. ...-.+.++..+.. . ++.|+-+++||.
T Consensus 45 ~~n~--~v~~d-G~L~I~a~~~~----~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~ 98 (259)
T cd02182 45 TANV--QLSGN-GTLQITPLRDG----SGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGD 98 (259)
T ss_pred CcCE--EEcCC-CeEEEEEEecC----CCCEEEEEEEECCccccccCCCcEEEEEEEECCC
Confidence 3444 455 5 89999997653 11112222222221 1 136778888875
No 103
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=24.41 E-value=2e+02 Score=23.16 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=29.2
Q ss_pred CCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEE---EeeeeeeEEEEEEECCCC
Q 046909 41 KKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRH---RAESTFGKFWRQFKMPMS 95 (150)
Q Consensus 41 ~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~---~~e~~~g~f~r~~~LP~~ 95 (150)
.++++ .+.+ +.|+|++.+.... ...-...++. .....+|.|+-+++||..
T Consensus 39 ~~~nv--~v~~-G~L~I~a~~~~~~--~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~ 91 (295)
T cd02180 39 DPDAV--TTIN-GSLRITMDQFRNH--GLNFRSGMLQSWNKLCFTGGYIEASASLPGK 91 (295)
T ss_pred cCcCe--EecC-CeEEEEEEeecCC--CCCEEEEEEEECCcceeeCCEEEEEEECCCC
Confidence 34555 4567 8999999865410 0001122222 234468899999999963
No 104
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=23.76 E-value=1.9e+02 Score=26.64 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=25.9
Q ss_pred ECCC--CCcccceEEEEeCCEEEEEEeccCcccCCCCeEEEe
Q 046909 91 KMPM--SADLEHVKVHLENGVLRITVPKLTEEKRRQPKVISI 130 (150)
Q Consensus 91 ~LP~--~vd~~~i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I 130 (150)
..|. .+|-..+...|++|+|++.+|-.+.. ....|.|
T Consensus 737 ~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~---~~~~v~~ 775 (777)
T PLN02711 737 EKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS---GLSLIEY 775 (777)
T ss_pred CCCeEEEECCEEeeeEecCCEEEEEecCCCcC---CceeEEE
Confidence 4554 45667777778899999999987632 4455554
No 105
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.45 E-value=1.3e+02 Score=20.18 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=23.3
Q ss_pred CCCCeEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEE
Q 046909 26 GAPIAHVIALDILGMKKDEVKIEVEENMVLRVSGER 61 (150)
Q Consensus 26 e~~~~~~i~~~lPG~~~edI~V~v~~~~~L~I~g~~ 61 (150)
+.+| .|....||++. |.|..++ +.|.|.+..
T Consensus 30 ~eGD--~ivas~pgis~--ieik~E~-kkL~v~t~~ 60 (96)
T COG4004 30 EEGD--RIVASSPGISR--IEIKPEN-KKLLVNTTD 60 (96)
T ss_pred eccc--EEEEecCCceE--EEEeccc-ceEEEeccc
Confidence 4455 67788999964 7777888 889998843
No 106
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=23.20 E-value=69 Score=20.96 Aligned_cols=23 Identities=17% Similarity=0.331 Sum_probs=17.8
Q ss_pred CCCCCeEEEEeeCcEEEEEEEEec
Q 046909 40 MKKDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 40 ~~~edI~V~v~~~~~L~I~g~~~~ 63 (150)
|+.+.|.+.... +.|.|+|+.=.
T Consensus 22 fd~~~I~l~T~~-G~L~I~G~~L~ 44 (85)
T TIGR02892 22 FDDEEILLETVM-GFLTIKGQELK 44 (85)
T ss_pred ECCCEEEEEeCc-EEEEEEcceeE
Confidence 467888888888 88999887443
No 107
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=22.87 E-value=1.1e+02 Score=22.63 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEcCCCCCCCeEEEEeeCcEEEEEEEE
Q 046909 33 IALDILGMKKDEVKIEVEENMVLRVSGER 61 (150)
Q Consensus 33 i~~~lPG~~~edI~V~v~~~~~L~I~g~~ 61 (150)
|.+.+||+..+.+.++..+ +.|.=.|..
T Consensus 18 isIsvpgv~~~~v~~s~~g-gsl~~~g~~ 45 (181)
T PF12080_consen 18 ISISVPGVPSNKVPASATG-GSLSKSGGG 45 (181)
T ss_pred EEEEeCCCCccccEEEeeC-CEEEecCCC
Confidence 6788899999998888877 665544443
No 108
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=22.78 E-value=3e+02 Score=19.83 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=28.1
Q ss_pred CCCCeEEEEEEcCCC---CCCCeEEEEeeCcEEEEEEEEe
Q 046909 26 GAPIAHVIALDILGM---KKDEVKIEVEENMVLRVSGERK 62 (150)
Q Consensus 26 e~~~~~~i~~~lPG~---~~edI~V~v~~~~~L~I~g~~~ 62 (150)
.-.+.|++.+.+|.+ ....|.|.+.-|+.+.=....+
T Consensus 46 ~~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ik 85 (142)
T PF14545_consen 46 KWENPYTLQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQIK 85 (142)
T ss_pred eEECCEEEEEECchhcCCCCceEEEEEEECCEEEEEEeEE
Confidence 556889999999999 8899999998756544444433
No 109
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=22.53 E-value=74 Score=21.81 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.0
Q ss_pred eEEEEeCCEEEEEEecc
Q 046909 101 VKVHLENGVLRITVPKL 117 (150)
Q Consensus 101 i~A~~~~GvL~I~lPK~ 117 (150)
|-+.+.+|||+|+++..
T Consensus 30 ~D~d~qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFDNG 46 (106)
T ss_pred cceecCCCEEEEEECCC
Confidence 55777899999999875
No 110
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=22.31 E-value=1.4e+02 Score=17.92 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.4
Q ss_pred EEcCCCCC-CCeEEEEeeCcEEEEE
Q 046909 35 LDILGMKK-DEVKIEVEENMVLRVS 58 (150)
Q Consensus 35 ~~lPG~~~-edI~V~v~~~~~L~I~ 58 (150)
++-.||.. +.|+|++.. +.|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~-g~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMP-GCLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEEC-CEEEEe
Confidence 45568855 589999999 899986
No 111
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=22.20 E-value=2.6e+02 Score=22.21 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=26.4
Q ss_pred EEEEeeCcEEEEEEEEecCCC----------ccccccCceEE-EeeeeeeEEEEEEECCC
Q 046909 46 KIEVEENMVLRVSGERKSDDY----------YKEGVEGEKRH-RAESTFGKFWRQFKMPM 94 (150)
Q Consensus 46 ~V~v~~~~~L~I~g~~~~~~~----------~~~~~~~~~~~-~~e~~~g~f~r~~~LP~ 94 (150)
.+.+.+ +.|+|++.+..... ....-.+.... .....||.|+-++.||.
T Consensus 45 Nv~v~d-G~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISN-GILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeC-CEEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 456778 89999998764110 00000111111 12346889999999754
No 112
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.45 E-value=7.8 Score=24.34 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=10.3
Q ss_pred ceEEEEeCCEEEE
Q 046909 100 HVKVHLENGVLRI 112 (150)
Q Consensus 100 ~i~A~~~~GvL~I 112 (150)
-|.|.|+||||.=
T Consensus 6 IIEaiYEnGVfKP 18 (67)
T COG2880 6 IIEAIYENGVLKP 18 (67)
T ss_pred HHHHHHhcccccc
Confidence 3678899999973
No 113
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=21.17 E-value=3.8e+02 Score=20.45 Aligned_cols=70 Identities=7% Similarity=0.070 Sum_probs=45.2
Q ss_pred CCCCCeEEEEeeCcEEEEEEEEecCCCccccccCceEEEeeeeeeEEEEEEECCCCCcccceEEEEeCCEEEEEEec
Q 046909 40 MKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLENGVLRITVPK 116 (150)
Q Consensus 40 ~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK 116 (150)
+.|. --+++++.+.++|-|.... ....++.++.--...|....-+..... ...-|+|.+..+.|.+.+--
T Consensus 112 ~sPK-~i~WiDD~~L~vIIG~a~G-----TvS~GGnLy~~nl~tg~~~~ly~~~dk-kqQVis~e~~gd~L~Lki~v 181 (200)
T PF15525_consen 112 YSPK-YIEWIDDNNLAVIIGYAHG-----TVSKGGNLYKYNLNTGNLTELYEWKDK-KQQVISAEKNGDNLNLKINV 181 (200)
T ss_pred cCCc-eeEEecCCcEEEEEccccc-----eEccCCeEEEEEccCCceeEeeecccc-ceeEEEEEEeCCEEEEEEEE
Confidence 4455 3355666567777776554 345677777666666766666655544 56668899988888776643
No 114
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=20.33 E-value=2.6e+02 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=14.9
Q ss_pred CCCeEEEEeeCcEEEEEEEEec
Q 046909 42 KDEVKIEVEENMVLRVSGERKS 63 (150)
Q Consensus 42 ~edI~V~v~~~~~L~I~g~~~~ 63 (150)
+.++.+.... +.+.|+|..+.
T Consensus 130 ~~~i~v~~~~-~~V~V~G~l~~ 150 (181)
T TIGR02761 130 PKSVEWNPQE-GTVKVRGHLKR 150 (181)
T ss_pred eeeEEEccCC-CEEEEEEEEEE
Confidence 3567777777 78888887655
Done!