RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046909
(150 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 104 bits (262), Expect = 1e-29
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 28/150 (18%)
Query: 5 RSHFFDVMFAMTEDPFRSRLDGAPI-----------------------AHVIALDILGMK 41
RS+ FD + DPF + P AHV D+ G+K
Sbjct: 6 RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65
Query: 42 KDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHV 101
K+EVK+EVE+ VL VSGER + + + +K HR E + GKF R+F++ A +E V
Sbjct: 66 KEEVKVEVEDGNVLVVSGERTKE----KEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV 121
Query: 102 KVHLENGVLRITVPKLTEEKRRQPKVISIN 131
K LENGVL +TVPK E K+ + K I I+
Sbjct: 122 KAGLENGVLTVTVPK-AEVKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 93.7 bits (234), Expect = 4e-26
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 30 AHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQ 89
V+ D+ G+ ++++++++ +L + GERKS+ E E+ R E +G F R+
Sbjct: 15 HFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSE----SSTETERFSRIERRYGSFHRR 69
Query: 90 FKMPMSADLEHVKVHLENGVLRITVPKLTE 119
F +P SAD + + NGVL I +PK
Sbjct: 70 FALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 86.7 bits (215), Expect = 1e-22
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 30 AHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAES-TFGKFWR 88
+ + G+ K+++ + + L + +R E E+ +E + +R
Sbjct: 67 HIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPL----MITESERIIYSEIPEEEEIYR 121
Query: 89 QFKMPMSADLEHVKVHLENGVLRITVPKLTEEKRRQPKVISI 130
K+P + E+ ENGVL + +PK K I+I
Sbjct: 122 TIKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 85.4 bits (212), Expect = 1e-22
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 18/127 (14%)
Query: 7 HFFDVMFAMTEDPFRSRLDGA---------PIAHVIALDILGMKKDEVKIEVEENMVLRV 57
+ + +E+ R + V+ D+ G K+++K V L +
Sbjct: 3 YLGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELII 62
Query: 58 SGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLE-HVKVHLENGVLRITVPK 116
ER+ + + ++P + + + ENGVL I +P
Sbjct: 63 EAEREITE--------PGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPI 114
Query: 117 LTEEKRR 123
+
Sbjct: 115 AGTSVFK 121
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 60.9 bits (148), Expect = 3e-13
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 32 VIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFK 91
+ LD+ +E+ ++V + + V + E+ +F R+++
Sbjct: 14 SVLLDVKHFSPEEISVKVVGD-HVEVHARHE-----------ERPDEHGFIAREFHRRYR 61
Query: 92 MPMSADLEHVKVHL-ENGVLRITVPKLTEEKRRQPKVI 128
+P D V L GVL I + +
Sbjct: 62 LPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPA 99
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 59.1 bits (143), Expect = 2e-12
Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 32 VIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFK 91
VI LD+ +++ ++V+E+ V + G+ E++ +F R+++
Sbjct: 15 VIFLDVKHFSPEDLTVKVQEDFVE-IHGKHN-----------ERQDDHGYISREFHRRYR 62
Query: 92 MPMSADLEHVKVHL-ENGVLRITVPKLTEEKRRQPKVISI 130
+P + D + L +G+L + PK+ +I
Sbjct: 63 LPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 57.8 bits (140), Expect = 3e-12
Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 32 VIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFK 91
+ LD+ +E+K++V + V+ V G+ + E++ +F R+++
Sbjct: 9 SVNLDVKHFSPEELKVKVLGD-VIEVHGKHE-----------ERQDEHGFISREFHRKYR 56
Query: 92 MPMSADLEHVKVHL-ENGVLRITVPKLTEEKRRQ 124
+P D + + +GVL + P+ +
Sbjct: 57 IPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 56.2 bits (136), Expect = 1e-11
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 30 AHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQ 89
++LD+ DE+ ++ ++ V+ ++G+ ++ F R+
Sbjct: 8 RWRVSLDVNHFAPDELTVKTKDG-VVEITGKHA-----------ARQDEHGYISRCFTRK 55
Query: 90 FKMPMSADLEHVKVHL-ENGVLRITVPK 116
+ +P D V L G L + P
Sbjct: 56 YTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 58.0 bits (140), Expect = 1e-11
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 30 AHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQ 89
+ LD+ +E+K++V ++ + V G+ + E++ +F R+
Sbjct: 74 RFSVNLDVKHFSPEELKVKVLGDV-IEVHGKHE-----------ERQDEHGFISREFHRK 121
Query: 90 FKMPMSADLEHVKVHL-ENGVLRITVPKLTEEKRRQPKVISIN 131
+++P D + L +GVL + P+ + I I
Sbjct: 122 YRIPADVDPLTITSSLSSDGVLTVNGPRKQVSG--PERTIPIT 162
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 57.5 bits (138), Expect = 8e-11
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 39 GMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADL 98
+VK+ + N V V G E + + + S +F++ F P D
Sbjct: 244 HFAPKDVKVWAKGNKVY-VHGVTGK--------EEKTENASHSEHREFYKAFVTPEVVDA 294
Query: 99 EHVKVHLENGVLRITVPKL 117
+ + +G++ + P
Sbjct: 295 SKTQAEIVDGLMVVEAPLF 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.008
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 46/137 (33%)
Query: 35 LDILGMKKDEVKIEVEE--------------------NMVLRVSGERKSDDYYKEGVEGE 74
L I + +++V+ V + N+V VSG +S G+
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQS----LYGLNLT 392
Query: 75 KRH-RAESTFGKFWRQFKMPMSADLEHVKVHLENGVLRITVP---KLTEEKRRQPKVISI 130
R +A S Q ++P S K+ N L + P L P I
Sbjct: 393 LRKAKAPSGLD----QSRIPFSER----KLKFSNRFLPVASPFHSHLLV-----PASDLI 439
Query: 131 NDELAGNSF---GEDIK 144
N +L N+ +DI+
Sbjct: 440 NKDLVKNNVSFNAKDIQ 456
Score = 28.9 bits (64), Expect = 0.70
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 12 MFAMTEDPFRSRLDGAPIAHVIALDILGMKKDEVKIEV----EENMVLRVSGERKSDDYY 67
M A+ + + +V+ + +G + + +E+ EN +G+ ++ D
Sbjct: 1809 MIAINPGRVAASFSQEALQYVV--ERVGKRTGWL-VEIVNYNVENQQYVAAGDLRALDTV 1865
Query: 68 KEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHL 105
+ K + + ++ S LE V+ HL
Sbjct: 1866 TNVLNFIKLQKIDII--------ELQKSLSLEEVEGHL 1895
Score = 27.3 bits (60), Expect = 2.4
Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 63/170 (37%)
Query: 1 MS---YARSHFFDVMFAMTEDPFRSRLDGAPIAHVIALDILGMKKDEVKIEVEENMV-LR 56
M Y S ++ ++ F+ G I LDI V N V L
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTY-GFSI-----LDI-----------VINNPVNLT 1673
Query: 57 V-----SGERKSDDY----YKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHVKVHLEN 107
+ G+R ++Y ++ V+G + + E F + S E
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDG--KLKTEKIFKEINEHST---SYTFRS-----EK 1723
Query: 108 GVLRITVPKLTEEKRRQP-------------K---VISINDELAGNSFGE 141
G+L T + T QP K +I + AG+S GE
Sbjct: 1724 GLLSAT--QFT-----QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein,
transferase, claisen condensatio acid biosynthesis;
2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A*
3mi3_A*
Length = 423
Score = 29.1 bits (66), Expect = 0.49
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 2 SYARSHFFDVMFAMTEDPFRSRLD 25
++ +S +V F+ +ED FRS L
Sbjct: 158 NFVKSKGIEVRFS-SEDSFRSDLV 180
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: d.67.3.1
Length = 84
Score = 26.9 bits (60), Expect = 1.2
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 109 VLRITVPKLTEEKRR 123
++R+ +PK+T
Sbjct: 69 LIRVPIPKVTSGPSS 83
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex
aeolicus} SCOP: d.67.3.1
Length = 184
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 109 VLRITVPKLTEEKRR 123
V+R+T+P LTEE+RR
Sbjct: 99 VIRVTLPPLTEERRR 113
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle,
protein synthesis, translation; 2.15A {Mycobacterium
tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Length = 185
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 109 VLRITVPKLTEEKRR 123
++R+ VP+LTEE+RR
Sbjct: 97 LIRVAVPQLTEERRR 111
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio
parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Length = 185
Score = 27.5 bits (62), Expect = 1.3
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 109 VLRITVPKLTEEKRR 123
++R+ +P LTEE+R+
Sbjct: 97 IIRVPLPPLTEERRK 111
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 27.6 bits (62), Expect = 1.3
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 87 WRQFKMPMSADLEHVKVHLENGVLRIT 113
WR+ P ++ + + + IT
Sbjct: 8 WRRPSRPEQRTEMYIDYDVSDRIATIT 34
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A
{Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6
2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J
3j0e_G
Length = 185
Score = 27.5 bits (62), Expect = 1.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 109 VLRITVPKLTEEKRR 123
L I +P LTEE+R+
Sbjct: 98 ALYINIPPLTEERRK 112
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta
sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1
PDB: 1t1m_C
Length = 185
Score = 27.5 bits (62), Expect = 1.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 109 VLRITVPKLTEEKRR 123
V+R+ P T E+R
Sbjct: 97 VIRLVFPSPTTEQRE 111
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.65A
{Bacillus anthracis}
Length = 209
Score = 27.6 bits (62), Expect = 1.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 109 VLRITVPKLTEEKRR 123
V+RI P LTEE+RR
Sbjct: 121 VIRIAFPALTEERRR 135
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli}
SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Length = 185
Score = 27.5 bits (62), Expect = 1.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 109 VLRITVPKLTEEKRR 123
+R+ +P LTEE+R+
Sbjct: 97 DIRVPLPPLTEERRK 111
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 27.6 bits (62), Expect = 1.8
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 92 MPMSADLEHVKVHLENGVLRITV--PKL 117
M ++A E +K L+ VL T P +
Sbjct: 1 MSLTASYETIKARLDGTVLSATFNAPPM 28
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 4.8
Identities = 4/41 (9%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 41 KKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAES 81
+ D +E+ R ++ +++ + E ++++ +
Sbjct: 100 ELDAASKVMEQE--WREKAKKDLEEWNQRQSEQVEKNKINN 138
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown
function, amino-acid biosynthesis; 2.10A {Listeria
monocytogenes str}
Length = 293
Score = 25.9 bits (58), Expect = 5.2
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 2 SYARSHFFDVMFAMTEDPFRSRLD 25
SYAR F V F+ ED RS
Sbjct: 128 SYARQKFDVVQFS-PEDATRSDRA 150
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM
barrel, catalytic domain, dimer, leucine biosynthesis,
ketoisovalerate; 1.95A {Neisseria meningitidis}
Length = 370
Score = 25.6 bits (57), Expect = 7.2
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 2 SYARSHFFDVMFAMTEDPFRSRLD 25
AR + DV F+ ED RS +D
Sbjct: 135 KIAREYTDDVEFS-CEDALRSEID 157
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 223
Score = 25.3 bits (56), Expect = 7.8
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 11/37 (29%)
Query: 43 DEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRA 79
EV++ EE+ LRV ++ + +R
Sbjct: 81 REVELTKEESGFLRV--KKTVE---------TRRANQ 106
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 25.4 bits (56), Expect = 10.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 76 RHRAESTFGKFWRQFKMPMSADLE 99
+ E+ F KF F P+ +E
Sbjct: 106 KEEKENHFLKFLGFFVGPIQFVME 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.379
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,319,597
Number of extensions: 135324
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 40
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)