RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046909
         (150 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 71.0 bits (173), Expect = 5e-17
 Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 28/150 (18%)

Query: 5   RSHFFDVMFAMTEDPFRSRLDGAPI-----------------------AHVIALDILGMK 41
           RS+ FD    +  DPF +     P                        AHV   D+ G+K
Sbjct: 5   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 64

Query: 42  KDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQFKMPMSADLEHV 101
           K+EVK+EVE+  VL VSGER  +   K     +K HR E + GKF R+F++   A +E V
Sbjct: 65  KEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRVERSSGKFVRRFRLLEDAKVEEV 120

Query: 102 KVHLENGVLRITVPKLTEEKRRQPKVISIN 131
           K  LENGVL +TVPK  E K+ + K I I+
Sbjct: 121 KAGLENGVLTVTVPK-AEVKKPEVKAIQIS 149


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 61.2 bits (148), Expect = 1e-13
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 30  AHVIALDILGMKKDEVKIEVEENMVLRVSGERKSDDYYKEGVEGEKRHRAESTFGKFWRQ 89
              +   + G+ K+++ +       L +  +R      +        +       + +R 
Sbjct: 21  HIKVIAWLPGVNKEDIILNAV-GDTLEIRAKRSPLMITESE---RIIYSEIPEEEEIYRT 76

Query: 90  FKMPMSADLEHVKVHLENGVLRITVPKLTEEKRRQPKVISI 130
            K+P +   E+     ENGVL + +PK         K I+I
Sbjct: 77  IKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINI 114


>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus
           musculus), mitochondrial [TaxId: 10090]}
          Length = 84

 Score = 27.5 bits (61), Expect = 0.26
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 106 ENGVLRITVPKLTEEKRR 123
           E  ++R+ +PK+T     
Sbjct: 66  EGTLIRVPIPKVTSGPSS 83


>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 298

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 6/29 (20%), Positives = 15/29 (51%)

Query: 97  DLEHVKVHLENGVLRITVPKLTEEKRRQP 125
            L+++   L++   ++ VP+    K R+ 
Sbjct: 263 TLKNIYESLKDMKYKVEVPEEIARKARKA 291


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 552,612
Number of extensions: 24442
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 4
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)