BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046913
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 161/242 (66%), Gaps = 7/242 (2%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELI 82
RRSA+ +P+ WD+DFL S + + E YK +A+ L+ +V+ IN + L LELI
Sbjct: 14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKA--EFLTLLELI 71
Query: 83 DNLQRLGLAYHFETEIENILHNIYNNKD-DKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
DN+QRLGL Y FE++I L ++ D +L+AT+L FRLLRQHG+ VSQE FS
Sbjct: 72 DNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFS 131
Query: 142 SFRDKNGGFICN---DFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F+ N D K ILSLYEAS+ +LEGE+I++EA F HLK+ L+ K ++
Sbjct: 132 GFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKE-LSEEKIGKE 190
Query: 199 LNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKD 258
L EQ ALELPLH R RLEA W I+ Y KK+D N LL+LA LD+N++Q+ YQ +L++
Sbjct: 191 LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRE 250
Query: 259 IS 260
S
Sbjct: 251 TS 252
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 163/248 (65%), Gaps = 13/248 (5%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELI 82
+RRS N QP++WD +++ SL+ + E + + L +V+ ++ E +P+ QLELI
Sbjct: 5 IRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE---KMEPVQQLELI 61
Query: 83 DNLQRLGLAYHFETEIENILHNIYNNKDDKWKNE----NLYATSLEFRLLRQHGYNVSQE 138
+L+ LGL+ F+ EI+ IL IYN NE +LY T+L FRLLRQHG+N+SQ+
Sbjct: 62 HDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQD 121
Query: 139 VFSSFRDKNG----GFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLN--S 192
VF+ F+++ G + D KG+L LYEAS+ +GE +E A +F +K L++ L+
Sbjct: 122 VFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGG 181
Query: 193 NKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATY 252
N+ DE+L R +L+LPLHWR+ +EARWFID Y ++ D N + +LAKL+FNI+QAT+
Sbjct: 182 NEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATH 241
Query: 253 QEELKDIS 260
Q+ELKD+S
Sbjct: 242 QQELKDLS 249
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 183 bits (464), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 154/245 (62%), Gaps = 13/245 (5%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELI 82
+RRS N PS WD +F+ SL ++ + + +A L VK E+ + QLELI
Sbjct: 1 MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKM---ELEKETDQIRQLELI 57
Query: 83 DNLQRLGLAYHFETEIENIL------HNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
D+LQR+GL+ HF+ E + IL H+ Y N K + +LY+TSL FRLLR+HG+ V+
Sbjct: 58 DDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPK-EERDLYSTSLAFRLLREHGFQVA 116
Query: 137 QEVFSSFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSN 193
QEVF SF+++ G F + +D +G+L LYEAS+ EGE+ +E A +F +K L++ +N
Sbjct: 117 QEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEG 176
Query: 194 KDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQ 253
D DL + +L++PLHWR+ R A +I+ Y K+ D N +L+LA LD NI+QA +Q
Sbjct: 177 GVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQ 236
Query: 254 EELKD 258
EELK+
Sbjct: 237 EELKE 241
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELI 82
+R A+ QPSIW FL+ N + E+ K+ + L+ +V+ MI V+ +L I
Sbjct: 21 MRPKADFQPSIWGDLFLNCPDKNIDAETEKRH-QQLKEEVRKMI--VAPMANSTQKLAFI 77
Query: 83 DNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSS 142
D++QRLG++YHF EIE+ L NIY+N +D +LY TS+ FRLLR+HGYNVS +VF+
Sbjct: 78 DSVQRLGVSYHFTKEIEDELENIYHNNNDA--ENDLYTTSIRFRLLREHGYNVSCDVFNK 135
Query: 143 FRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDL 199
F+D+ G F + +D +G+L LY+ASY + GE I++EA FT+ HL + S D L
Sbjct: 136 FKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASL--DHPL 193
Query: 200 NEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDI 259
+E+ AL+ + +PR+EAR ++ VY+ + N ALL+ AK+DFN+LQ +++EL +I
Sbjct: 194 SEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEI 253
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 180 bits (456), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 22 IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLEL 81
IVR A+ PS+W FL N E Y K+ E L+ + + M+ ++ K D L L
Sbjct: 15 IVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 72
Query: 82 IDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
ID ++RLG++YHFE EI++IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFS 129
Query: 142 SFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K
Sbjct: 130 KFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKS--P 187
Query: 199 LNEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
L EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 188 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 247
Query: 258 DIS 260
+S
Sbjct: 248 QVS 250
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 180 bits (456), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 22 IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLEL 81
IVR A+ PS+W FL N E Y K+ E L+ + + M+ ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82 IDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
ID ++RLG++YHFE EI++IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFS 127
Query: 142 SFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K
Sbjct: 128 KFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKS--P 185
Query: 199 LNEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
L EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 186 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 245
Query: 258 DIS 260
+S
Sbjct: 246 QVS 248
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 22 IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLEL 81
IVR A+ PS+W FL N E Y K+ E L+ + + M+ ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82 IDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
ID ++RLG++YHFE EI++IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFS 127
Query: 142 SFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K
Sbjct: 128 KFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKS--P 185
Query: 199 LNEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
L EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 186 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 245
Query: 258 DIS 260
+S
Sbjct: 246 QVS 248
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 22 IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLEL 81
IVR A+ PS+W FL N E Y K+ E L+ + + M+ ++ K D L L
Sbjct: 15 IVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 72
Query: 82 IDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
ID ++RLG++YHFE EI++IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFS 129
Query: 142 SFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K
Sbjct: 130 KFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKS--P 187
Query: 199 LNEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
L EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 188 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 247
Query: 258 DIS 260
+S
Sbjct: 248 QVS 250
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 22 IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLEL 81
IVR A+ PS+W FL N E Y K+ E L+ + + M+ ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82 IDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
ID ++RLG++YHFE EI++IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFS 127
Query: 142 SFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K
Sbjct: 128 KFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLK--SP 185
Query: 199 LNEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
L EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 186 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 245
Query: 258 DIS 260
+S
Sbjct: 246 QVS 248
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 22 IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLEL 81
IVR A+ PS+W FL N E Y K+ E L+ + + M+ ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82 IDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
ID ++RLG++YHFE EI++IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFS 127
Query: 142 SFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K
Sbjct: 128 KFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKS--P 185
Query: 199 LNEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
L EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 186 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 245
Query: 258 DIS 260
+S
Sbjct: 246 QVS 248
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 151/242 (62%), Gaps = 11/242 (4%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELI 82
VR A+ PS+W FL N E Y K+ E L+ + + M+ ++ K D L LI
Sbjct: 1 VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNLI 58
Query: 83 DNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSS 142
D ++RLG++YHFE EI++IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 59 DTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFSK 115
Query: 143 FRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDL 199
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K L
Sbjct: 116 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLK--SPL 173
Query: 200 NEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELKD 258
EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 174 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 233
Query: 259 IS 260
+S
Sbjct: 234 VS 235
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 22 IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLEL 81
IVR A+ PS+W FL N E Y ++ E L+ + ++M+ ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSML--LATGRKLADTLNL 70
Query: 82 IDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
ID ++RLG++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFS 127
Query: 142 SFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K
Sbjct: 128 KFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKS--P 185
Query: 199 LNEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
L EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 186 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 245
Query: 258 DIS 260
+S
Sbjct: 246 QVS 248
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 22 IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLEL 81
IVR A+ PS+W FL N E Y ++ E L+ + ++M+ ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSML--LATGRKLADTLNL 70
Query: 82 IDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
ID ++RLG++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S E+FS
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFS 127
Query: 142 SFRDKNGGF---ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F+D+NG F + +D G+L+LYEAS+ + I+E+A F++ HL+ K
Sbjct: 128 KFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKS--P 185
Query: 199 LNEQARRALELPLHWRMPRLEARWFI-DVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
L EQ ALE LH +PR+E R+FI +Y+K++ KN+ LL+ AKLDFN+LQ +++EL
Sbjct: 186 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 245
Query: 258 DIS 260
+S
Sbjct: 246 QVS 248
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 152/242 (62%), Gaps = 13/242 (5%)
Query: 25 RSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDN 84
R+ QP++WD + S + E + +A + +VK M+ E + +LELID+
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQE---EVDSIRRLELIDD 92
Query: 85 LQRLGLAYHFETEIENILHNIY--NNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSS 142
L+RLG++ HFE EI IL++ Y NN+ D+ +LY+T+L FRLLRQ+ ++VSQEVF
Sbjct: 93 LRRLGISCHFEREIVEILNSKYYTNNEIDE---RDLYSTALRFRLLRQYDFSVSQEVFDC 149
Query: 143 FRDKNGG----FICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
F++ G + +D +G+L LYEAS+ S +GE + A F +K L++ + +KD +
Sbjct: 150 FKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDI-N 208
Query: 199 LNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKD 258
L RALELP HWR+ AR FID Y+++ D N +L+LAKLDFN++QA +Q+ELK+
Sbjct: 209 LLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKE 268
Query: 259 IS 260
S
Sbjct: 269 AS 270
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 38/263 (14%)
Query: 35 DHDFLHS---LSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLE---LIDNLQRL 88
D FL S +C F K E L + N V P+D LE ++DN+ RL
Sbjct: 253 DGSFLSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPCLY-PVDLLERLLIVDNIVRL 311
Query: 89 GLAYHFETEIENILHNIY---NNKDDKWKNEN----LYATSLEFRLLRQHGYNVSQEVFS 141
G+ HFE EI+ L +Y N + W N L T+L FRLLR H YNVS +F
Sbjct: 312 GIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFD 371
Query: 142 SFRDKNGGFICN------DFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNK- 194
+F+D NG FIC+ D +L+LY AS + GE+I++EA F +K+L++ L ++
Sbjct: 372 NFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSET 431
Query: 195 -----DDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDK------------NHAL 237
+ ++L+++ + AL+ H +PR+EA+ + VY + N
Sbjct: 432 SSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKF 491
Query: 238 LQLAKLDFNILQATYQEELKDIS 260
L+L KLDFNI+Q+ +QEE+K+++
Sbjct: 492 LELGKLDFNIIQSIHQEEMKNVT 514
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 19 TAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMIN 67
T+ ++RR+AN P++W +D +HSL + SY+++AE L ++K M+N
Sbjct: 20 TSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLN 68
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 133/262 (50%), Gaps = 38/262 (14%)
Query: 35 DHDFLHSLSCN---FNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLE---LIDNLQRL 88
D FL S + F KK + L +K N V + PLD E +D ++RL
Sbjct: 225 DGSFLSSPASTAAVFMRTGNKKCLDFLNFVLKKFGNHVPC-HYPLDLFERLWAVDTVERL 283
Query: 89 GLAYHFETEIENILHNIYNNKDDK---WKNENLYA----TSLEFRLLRQHGYNVSQEVFS 141
G+ HF+ EI+ L +Y++ D++ W EN T++ R+LR HGYNVS +V
Sbjct: 284 GIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLK 343
Query: 142 SFRDKNGGFIC------NDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCL-NSNK 194
+FRD+NG F C +L++ S+ S GE+IMEEA T ++L+ L N +
Sbjct: 344 TFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDA 403
Query: 195 DD-----EDLNEQARRALELPLHWRMPRLEARWFID------------VYEKKKDKNHAL 237
D +++ + AL+ P H MPRLEAR +I+ VY N
Sbjct: 404 FDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKY 463
Query: 238 LQLAKLDFNILQATYQEELKDI 259
L+LAKLDFN +Q+ +Q EL+D+
Sbjct: 464 LELAKLDFNKVQSIHQTELQDL 485
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 26/208 (12%)
Query: 76 LDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDK---WKNENLY----ATSLEFRLL 128
L++L L+DN++ LG+ HF+ EI+ L +Y + ++ W ++L T+L R L
Sbjct: 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 129 RQHGYNVSQEVFSSFRDKNGGFICN------DFKGILSLYEASYCSLEGESIMEEAWQFT 182
R HGYNVS +V ++F+D+NG F + + + +++L+ AS + E M++A +F
Sbjct: 307 RMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFA 366
Query: 183 SKHLKQCLNSN-KDDEDLNEQARRALELPLHWRMPRLEARWFID------------VYEK 229
+L++ L + + L ++ +E P H +PRLEAR +ID +Y
Sbjct: 367 EPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRM 426
Query: 230 KKDKNHALLQLAKLDFNILQATYQEELK 257
N L+LAKLDFNI+Q+ +QEELK
Sbjct: 427 PSLSNSKCLELAKLDFNIVQSLHQEELK 454
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 112/216 (51%), Gaps = 36/216 (16%)
Query: 75 PLDQLE---LIDNLQRLGLAYHFETEIENIL---HNIYNNKDDKWKN----ENLYATSLE 124
P+D E ++D LQRLG++ +FE EI+ L H + + W +++ T++
Sbjct: 242 PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMA 301
Query: 125 FRLLRQHGYNVSQEVFSSFRDKNGGFIC------NDFKGILSLYEASYCSLEGESIMEEA 178
FRLLRQHGY VS +VF +F +K G F C G+ +LY AS + E I++ A
Sbjct: 302 FRLLRQHGYQVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNA 360
Query: 179 WQFTSKHL------KQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKD 232
+F+ +L ++ ++ +DL + ALE+P + +PR+E R++ID Y + D
Sbjct: 361 KEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGEND 420
Query: 233 -------------KNHALLQLAKLDFNILQATYQEE 255
N+ L+LAK D+N QA +Q E
Sbjct: 421 VWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLE 456
>pdb|2BHV|A Chain A, Structure Of Comb10 Of The Com Type Iv Secretion System Of
Helicobacter Pylori
pdb|2BHV|B Chain B, Structure Of Comb10 Of The Com Type Iv Secretion System Of
Helicobacter Pylori
pdb|2BHV|C Chain C, Structure Of Comb10 Of The Com Type Iv Secretion System Of
Helicobacter Pylori
pdb|2BHV|D Chain D, Structure Of Comb10 Of The Com Type Iv Secretion System Of
Helicobacter Pylori
pdb|2BHV|E Chain E, Structure Of Comb10 Of The Com Type Iv Secretion System Of
Helicobacter Pylori
pdb|2BHV|F Chain F, Structure Of Comb10 Of The Com Type Iv Secretion System Of
Helicobacter Pylori
Length = 246
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 80 ELID-NLQRLGLAYHFETEIENILHNI---YNNKDDKWKNENLYATSLEFRLLRQHGYNV 135
ELI+ N QR G+ T +L I NN+ +K N + L +L+RQ G +
Sbjct: 137 ELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMRQSGMGI 196
Query: 136 SQEVFSSFRDKN 147
+Q V RDK+
Sbjct: 197 NQVVNQILRDKS 208
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 106 YNNKDDKWKN------ENLYATSLEFRLLRQHGYNVSQEVFSSFR 144
YN++D W + N + +L++ LL GYN++ + FR
Sbjct: 49 YNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFR 93
>pdb|1V8P|A Chain A, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|B Chain B, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|C Chain C, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|D Chain D, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|E Chain E, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|F Chain F, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|G Chain G, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|H Chain H, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|I Chain I, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|J Chain J, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|K Chain K, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
pdb|1V8P|L Chain L, Crystal Structure Of Pae2754 From Pyrobaculum Aerophilum
Length = 158
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 14/58 (24%)
Query: 159 LSLYEASYCSLEGESIMEEA------WQFTSKHLKQCLNSNK--DDEDLNEQARRALE 208
L++YEA G ++ +EA W S+HLK+ L+S K +D L+E R A+E
Sbjct: 59 LTIYEA------GNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVE 110
>pdb|2ZVI|A Chain A, Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-
Phosphate Enolase From Bacillus Subtilis
pdb|2ZVI|B Chain B, Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-
Phosphate Enolase From Bacillus Subtilis
pdb|2ZVI|C Chain C, Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-
Phosphate Enolase From Bacillus Subtilis
pdb|2ZVI|D Chain D, Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-
Phosphate Enolase From Bacillus Subtilis
Length = 425
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 EGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALEL 209
EG+ I++E ++ T +N DL ++ARRA EL
Sbjct: 206 EGKQILKETYEQTGHKTLYAVNLTGRTADLKDKARRAAEL 245
>pdb|2QNT|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Agrobacterium Tumefaciens Str. C58
Length = 141
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 141 SSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTS 183
S +RD+ G I DF G L+E + EG S+ E W+ +S
Sbjct: 24 SFYRDRLGLKILEDF-GSFVLFETGFAIHEGRSLEETIWRTSS 65
>pdb|4E5S|A Chain A, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|B Chain B, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|C Chain C, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|D Chain D, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
Length = 331
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 26/96 (27%)
Query: 176 EEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNH 235
E+ ++T+ + QCL SNK E L + W + W+ID +K KN
Sbjct: 143 EKGLEYTTDYFLQCLTSNKPIEVLPSET---------WS----DDSWYIDQENRKFIKNE 189
Query: 236 ALLQL----AKLD--------FNILQAT-YQEELKD 258
+ + A D N+LQ T Y LKD
Sbjct: 190 GYVSIHEGEATGDIIGGNXSTLNLLQGTSYXPNLKD 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,051,082
Number of Sequences: 62578
Number of extensions: 332112
Number of successful extensions: 780
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 28
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)