Query 046913
Match_columns 261
No_of_seqs 146 out of 749
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 3.6E-79 7.9E-84 603.6 22.7 236 24-261 1-245 (542)
2 PF01397 Terpene_synth: Terpen 100.0 2.1E-60 4.6E-65 413.4 14.1 172 34-207 1-183 (183)
3 PLN02279 ent-kaur-16-ene synth 100.0 8.2E-60 1.8E-64 481.0 18.3 187 73-261 268-479 (784)
4 PLN02592 ent-copalyl diphospha 100.0 4.2E-59 9.1E-64 475.2 17.4 188 73-261 308-527 (800)
5 PF11848 DUF3368: Domain of un 42.4 13 0.00028 25.4 1.0 25 121-145 21-45 (48)
6 COG5123 TOA2 Transcription ini 41.4 15 0.00032 29.7 1.3 41 155-206 1-41 (113)
7 COG4738 Predicted transcriptio 31.6 86 0.0019 26.0 4.3 51 79-133 14-70 (124)
8 cd07604 BAR_ASAPs The Bin/Amph 29.1 87 0.0019 28.1 4.3 87 49-146 12-100 (215)
9 KOG3463 Transcription initiati 27.9 35 0.00076 27.8 1.4 36 158-204 3-38 (109)
10 PF14164 YqzH: YqzH-like prote 27.7 31 0.00067 25.6 1.0 18 125-142 11-28 (64)
11 PRK11621 twin-argninine leader 25.7 1.2E+02 0.0026 26.9 4.6 84 126-229 108-191 (204)
12 COG1725 Predicted transcriptio 24.8 1.5E+02 0.0032 24.7 4.6 56 116-178 47-116 (125)
13 PF08373 RAP: RAP domain; Int 23.7 59 0.0013 22.2 1.8 25 118-142 17-41 (58)
14 PF11000 DUF2840: Protein of u 22.8 51 0.0011 28.2 1.6 17 76-92 95-111 (149)
15 KOG3951 Uncharacterized conser 21.6 1.2E+02 0.0027 28.5 3.9 42 145-188 264-308 (321)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=3.6e-79 Score=603.57 Aligned_cols=236 Identities=51% Similarity=0.832 Sum_probs=217.3
Q ss_pred cCCCCCCCCCCCccccccCCCCCCch-hHHHHHHHHHHHHHHHHhhh--cCCCCcchhHHHHHHHHHhCCccccHHHHHH
Q 046913 24 RRSANNQPSIWDHDFLHSLSCNFNGE-SYKKQAEHLQGKVKTMINEV--SVTNKPLDQLELIDNLQRLGLAYHFETEIEN 100 (261)
Q Consensus 24 R~~a~~~ps~W~~~fl~s~~~~~~~~-~~~~~~~~LkeeVr~ml~~~--~~~~d~~~~L~lID~lqRLGI~yhFe~EI~~ 100 (261)
||+++|+||+||+++++++.+++... .+.+++++||++||+||... . .|++++|+|||+||||||+|||++||++
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~--~~~~~~l~liD~lqrLGi~~hF~~EI~~ 78 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYP--VDLFERLWLIDRLQRLGISYHFEDEIKE 78 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 78999999999997777776655544 78899999999999999763 2 7899999999999999999999999999
Q ss_pred HHHHHHhcCCCcC--cCCChhHHHHHHHHHHhcCccccccccccccccCCccc---ccchhhHHHHHHhhcCCCCCccHH
Q 046913 101 ILHNIYNNKDDKW--KNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFI---CNDFKGILSLYEASYCSLEGESIM 175 (261)
Q Consensus 101 ~L~~i~~~~~~~~--~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~---~~Dv~glLsLYeAS~l~~~gE~iL 175 (261)
+|++||+.+.... ...|||+|||+|||||||||+||||||++|+|++|+|+ .+|++|||||||||||+++||+||
T Consensus 79 ~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iL 158 (542)
T cd00684 79 ILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDIL 158 (542)
T ss_pred HHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHH
Confidence 9999998764321 24799999999999999999999999999999999999 589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC-CCCchHHHHHHHhccCCccCCchhHHHHhhHHHhhccCcccHHHHHHHHhhhHHHHHHHHH
Q 046913 176 EEAWQFTSKHLKQCLNSN-KDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQE 254 (261)
Q Consensus 176 deA~~Ft~~~L~~~~~~~-~~~~~L~~~V~~aL~~P~h~~~~Rlear~yI~~Y~~~~~~n~~LLeLAklDFN~~Q~~hq~ 254 (261)
|||+.||++||++++.++ .++++|+++|.+||++|+||++||||||+||+.|+++.++|++||||||+|||+||++||+
T Consensus 159 deA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~ 238 (542)
T cd00684 159 DEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE 238 (542)
T ss_pred HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHH
Confidence 999999999999998752 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhC
Q 046913 255 ELKDISG 261 (261)
Q Consensus 255 EL~~lsr 261 (261)
||++++|
T Consensus 239 El~~~~r 245 (542)
T cd00684 239 ELKILSR 245 (542)
T ss_pred HHHHHhH
Confidence 9999875
No 2
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=2.1e-60 Score=413.44 Aligned_cols=172 Identities=49% Similarity=0.831 Sum_probs=148.2
Q ss_pred CCccccccCCCCCC------chhHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHhCCccccHHHHHHHHHHHHh
Q 046913 34 WDHDFLHSLSCNFN------GESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYN 107 (261)
Q Consensus 34 W~~~fl~s~~~~~~------~~~~~~~~~~LkeeVr~ml~~~~~~~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~ 107 (261)
|||+|++|+.+.+. .+.+.+++++||++||.||..+. .|++++|+|||+||||||+|||++||+++|++||+
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~--~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~ 78 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASY--PDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYR 78 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSS--SHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhh
Confidence 99999987766554 37889999999999999998763 48999999999999999999999999999999999
Q ss_pred cCCCcC-cCCChhHHHHHHHHHHhcCccccccccccccccCCccc---ccchhhHHHHHHhhcCCCCCccHHHHHHHHHH
Q 046913 108 NKDDKW-KNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFI---CNDFKGILSLYEASYCSLEGESIMEEAWQFTS 183 (261)
Q Consensus 108 ~~~~~~-~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~ 183 (261)
.+.... ...|||+|||+|||||||||+||||||++|+|++|+|+ ++||+|||+|||||||+++||+|||||+.||+
T Consensus 79 ~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~ 158 (183)
T PF01397_consen 79 SWDEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTT 158 (183)
T ss_dssp TTTTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHH
T ss_pred hccccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 865432 22599999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred HHHHHHhccCCC-CchHHHHHHHhc
Q 046913 184 KHLKQCLNSNKD-DEDLNEQARRAL 207 (261)
Q Consensus 184 ~~L~~~~~~~~~-~~~L~~~V~~aL 207 (261)
+||+++++++.. +++|+++|+|||
T Consensus 159 ~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 159 KHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHhC
Confidence 999999986322 245999999997
No 3
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=8.2e-60 Score=480.99 Aligned_cols=187 Identities=31% Similarity=0.467 Sum_probs=172.4
Q ss_pred CCcchhHHHHHHHHHhCCccccHHHHHHHHHHHHhcCCCcC--cCCChhHHHHHHHHHHhcCccccccccccccccCCcc
Q 046913 73 NKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKW--KNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGF 150 (261)
Q Consensus 73 ~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~--~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F 150 (261)
.++++++++||+||||||+|||++||+++|+.+|+.+.... ...|+++|||+|||||||||+||||||++|+|++ |
T Consensus 268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~--F 345 (784)
T PLN02279 268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH--F 345 (784)
T ss_pred ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc--c
Confidence 58899999999999999999999999999999998654311 2369999999999999999999999999999765 8
Q ss_pred c------ccchhhHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhccC-----CCCchHHHHHHHhccCCccCCchhHH
Q 046913 151 I------CNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSN-----KDDEDLNEQARRALELPLHWRMPRLE 219 (261)
Q Consensus 151 ~------~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~-----~~~~~L~~~V~~aL~~P~h~~~~Rle 219 (261)
+ .+|++|||+||||||+++|||.|||||+.||++||++.+..+ .++++|+++|.+||++|||++|||||
T Consensus 346 ~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlE 425 (784)
T PLN02279 346 SDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLA 425 (784)
T ss_pred cchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHH
Confidence 7 389999999999999999999999999999999999988753 24678999999999999999999999
Q ss_pred HHhhHHHhhccCc------------ccHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 046913 220 ARWFIDVYEKKKD------------KNHALLQLAKLDFNILQATYQEELKDISG 261 (261)
Q Consensus 220 ar~yI~~Y~~~~~------------~n~~LLeLAklDFN~~Q~~hq~EL~~lsr 261 (261)
||+||+.|++++. +|++||||||+|||+||++||+||++|+|
T Consensus 426 aR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~r 479 (784)
T PLN02279 426 NRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLER 479 (784)
T ss_pred HHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 9999999988875 89999999999999999999999999986
No 4
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=4.2e-59 Score=475.23 Aligned_cols=188 Identities=35% Similarity=0.560 Sum_probs=171.8
Q ss_pred CCcchhHHHHHHHHHhCCccccHHHHHHHHHHHHhcCCC---cC----cCCChhHHHHHHHHHHhcCccccccccccccc
Q 046913 73 NKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDD---KW----KNENLYATSLEFRLLRQHGYNVSQEVFSSFRD 145 (261)
Q Consensus 73 ~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~---~~----~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d 145 (261)
.+++++|++||+||||||+|||++||+++|+.+|+.+.. .+ ...|+++|||+|||||||||+||||||++|++
T Consensus 308 ~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~ 387 (800)
T PLN02592 308 VDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK 387 (800)
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC
Confidence 689999999999999999999999999999999985322 11 13699999999999999999999999999997
Q ss_pred cCCccc------ccchhhHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhccC------CCCchHHHHHHHhccCCccC
Q 046913 146 KNGGFI------CNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSN------KDDEDLNEQARRALELPLHW 213 (261)
Q Consensus 146 ~~G~F~------~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~------~~~~~L~~~V~~aL~~P~h~ 213 (261)
+|+|+ ..|++|||+|||||||+++||.|||+|+.||++||++.+..+ .++++|+++|.|||++||||
T Consensus 388 -~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~ 466 (800)
T PLN02592 388 -GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYA 466 (800)
T ss_pred -CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhc
Confidence 89997 579999999999999999999999999999999999986421 24678999999999999999
Q ss_pred CchhHHHHhhHHHhhccCcc-------------cHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 046913 214 RMPRLEARWFIDVYEKKKDK-------------NHALLQLAKLDFNILQATYQEELKDISG 261 (261)
Q Consensus 214 ~~~Rlear~yI~~Y~~~~~~-------------n~~LLeLAklDFN~~Q~~hq~EL~~lsr 261 (261)
+||||||||||+.|++++++ |+.||||||+|||+||++||+||++++|
T Consensus 467 ~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsr 527 (800)
T PLN02592 467 SLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQK 527 (800)
T ss_pred CcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhH
Confidence 99999999999999987765 9999999999999999999999999986
No 5
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.42 E-value=13 Score=25.43 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCccccccccccccc
Q 046913 121 TSLEFRLLRQHGYNVSQEVFSSFRD 145 (261)
Q Consensus 121 ~AL~FRLLRqhGy~VS~DvF~~F~d 145 (261)
+.=.+.-|+++||++|+++++.+..
T Consensus 21 ~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 21 VKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3334555689999999998877643
No 6
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=41.38 E-value=15 Score=29.73 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.2
Q ss_pred hhhHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHh
Q 046913 155 FKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRA 206 (261)
Q Consensus 155 v~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~L~~~V~~a 206 (261)
+.|+-+||+-|-++--=|++||+ +++.|.++|+|+..|-..
T Consensus 1 v~~yYElYRrs~ig~~L~dalD~-----------lis~g~isp~lam~vLet 41 (113)
T COG5123 1 VPGYYELYRRSMIGKVLEDALDE-----------LISAGVISPNLAMHVLET 41 (113)
T ss_pred CccHHHHHHHHHHHHHHHHHHHH-----------HHhcCCcCHHHHHHHHHH
Confidence 35889999999876434455554 445566788877665444
No 7
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=31.57 E-value=86 Score=26.00 Aligned_cols=51 Identities=25% Similarity=0.437 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHHhcCCC---cCc-CCCh--hHHHHHHHHHHhcCc
Q 046913 79 LELIDNLQRLGLAYHFETEIENILHNIYNNKDD---KWK-NENL--YATSLEFRLLRQHGY 133 (261)
Q Consensus 79 L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~---~~~-~~dL--~~~AL~FRLLRqhGy 133 (261)
-.+|+.|+.|||++---. +|-.+-+.... ... ...| -.||++.|.||.+|.
T Consensus 14 ~~~ie~L~~lgi~R~vA~----tlv~L~~~~E~sS~~IE~~sgLRQPEVSiAMr~Lre~gW 70 (124)
T COG4738 14 YEIIELLRILGIPRNVAT----TLVCLAKGDEASSREIERVSGLRQPEVSIAMRYLRENGW 70 (124)
T ss_pred HHHHHHHHHcCCCchHHH----HHHHHhcCcchhhhhhHHhhcCCCchhHHHHHHHHHccc
Confidence 458999999999986532 33223221110 000 0222 368999999999995
No 8
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=29.10 E-value=87 Score=28.15 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHhCCccc--cHHHHHHHHHHHHhcCCCcCcCCChhHHHHHHH
Q 046913 49 ESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYH--FETEIENILHNIYNNKDDKWKNENLYATSLEFR 126 (261)
Q Consensus 49 ~~~~~~~~~LkeeVr~ml~~~~~~~d~~~~L~lID~lqRLGI~yh--Fe~EI~~~L~~i~~~~~~~~~~~dL~~~AL~FR 126 (261)
+....+.++++.-+|.|..... .=.-....++++|+.||=..- .+.+|..+|...-. -+..++=.+-
T Consensus 12 ~~~~~~l~Kl~K~~k~~~~~g~--~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~---------~l~El~~~~~ 80 (215)
T cd07604 12 EGDRVGLQKLKKAVKAIHNSGL--AHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSV---------FTKELAALFK 80 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 4456788888899998886531 124467889999999993222 33368888765422 2444555566
Q ss_pred HHHhcCcccccccccccccc
Q 046913 127 LLRQHGYNVSQEVFSSFRDK 146 (261)
Q Consensus 127 LLRqhGy~VS~DvF~~F~d~ 146 (261)
.|++|=-++-...+.+|..+
T Consensus 81 ~L~~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 81 NLMQNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77776666666667777655
No 9
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=27.86 E-value=35 Score=27.77 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Q 046913 158 ILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQAR 204 (261)
Q Consensus 158 lLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~L~~~V~ 204 (261)
+-+||+++-++--=+++| .++++.|.++|+|+.+|-
T Consensus 3 ~YelYR~ttlG~~L~~tL-----------De~v~~g~itp~la~~VL 38 (109)
T KOG3463|consen 3 YYELYRRTTLGNALQKTL-----------DELVSDGVITPSLAKKVL 38 (109)
T ss_pred HHHHHHHhhHHHHHHHHH-----------HHHHHcCCCCHHHHHHHH
Confidence 468999998874333344 445666667888876653
No 10
>PF14164 YqzH: YqzH-like protein
Probab=27.65 E-value=31 Score=25.57 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.0
Q ss_pred HHHHHhcCcccccccccc
Q 046913 125 FRLLRQHGYNVSQEVFSS 142 (261)
Q Consensus 125 FRLLRqhGy~VS~DvF~~ 142 (261)
=+-|||+||++.++-+..
T Consensus 11 ~~~l~QYg~d~~~~pls~ 28 (64)
T PF14164_consen 11 INCLRQYGYDVECMPLSD 28 (64)
T ss_pred HHHHHHhCCcccCCCCCH
Confidence 356999999999987775
No 11
>PRK11621 twin-argninine leader-binding protein DmsD; Provisional
Probab=25.67 E-value=1.2e+02 Score=26.90 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=55.5
Q ss_pred HHHHhcCccccccccccccccCCcccccchhhHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Q 046913 126 RLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARR 205 (261)
Q Consensus 126 RLLRqhGy~VS~DvF~~F~d~~G~F~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~L~~~V~~ 205 (261)
+.+|++|+.++.+. +. ..|-=|++=+. +|+|.-.+. .+.+..|-..||-.+... ....|..
T Consensus 108 ~f~~~~Gi~~~~~~----~E------P~DHigl~L~~-~a~L~~~~~--~~~~~~fl~~HLl~W~~~------f~~~v~~ 168 (204)
T PRK11621 108 QWMRENGIQFEMKQ----NE------PEDHFGLLLLL-AAWLAENGR--PTELEELLAWHLLPWSYR------FLDVFIE 168 (204)
T ss_pred HHHHHcCCCcCCCC----CC------CccHHHHHHHH-HHHHHhCCC--HHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 46699999887641 11 24555544333 566654433 356778999999888754 6777777
Q ss_pred hccCCccCCchhHHHHhhHHHhhc
Q 046913 206 ALELPLHWRMPRLEARWFIDVYEK 229 (261)
Q Consensus 206 aL~~P~h~~~~Rlear~yI~~Y~~ 229 (261)
+=..|+++.+.+| ++.+++..++
T Consensus 169 ~a~~~FY~~lA~L-~~~~L~~~~~ 191 (204)
T PRK11621 169 QAGHPFYQALAQL-ARLTLAQWQS 191 (204)
T ss_pred hcCCchHHHHHHH-HHHHHHHHHH
Confidence 7789999999877 3456665544
No 12
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=24.85 E-value=1.5e+02 Score=24.69 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHhcCccccccccccccccCCcccccchh------------hHHH--HHHhhcCCCCCccHHHHH
Q 046913 116 ENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFK------------GILS--LYEASYCSLEGESIMEEA 178 (261)
Q Consensus 116 ~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~Dv~------------glLs--LYeAS~l~~~gE~iLdeA 178 (261)
-+.+|++=+|+.|.+.||=-+--- .|.|-+.|.+ ..|+ +.+|.++++.-|+|++=.
T Consensus 47 VNpnTv~raY~eLE~eG~i~t~rg-------~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~s~eei~~~~ 116 (125)
T COG1725 47 VNPNTVQRAYQELEREGIVETKRG-------KGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGLSLEEILELL 116 (125)
T ss_pred CCHHHHHHHHHHHHHCCCEEEecC-------eeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 478999999999999998665543 3444433322 2222 456666666655555443
No 13
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=23.73 E-value=59 Score=22.22 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhcCcccccccccc
Q 046913 118 LYATSLEFRLLRQHGYNVSQEVFSS 142 (261)
Q Consensus 118 L~~~AL~FRLLRqhGy~VS~DvF~~ 142 (261)
+-.++|.=|+|+..||.|-+=-|-.
T Consensus 17 ~g~t~lk~r~L~~~G~~Vi~Ip~~e 41 (58)
T PF08373_consen 17 TGSTKLKHRHLKALGYKVISIPYYE 41 (58)
T ss_pred chHHHHHHHHHHHCCCEEEEecHHH
Confidence 3579999999999999996644433
No 14
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=22.82 E-value=51 Score=28.25 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHhCCcc
Q 046913 76 LDQLELIDNLQRLGLAY 92 (261)
Q Consensus 76 ~~~L~lID~lqRLGI~y 92 (261)
-.-|..||.|+.|||+-
T Consensus 95 ~~VL~~IDaiEalGidp 111 (149)
T PF11000_consen 95 ERVLQAIDAIEALGIDP 111 (149)
T ss_pred HHHHHHHhHHHHcCCCh
Confidence 34588999999999974
No 15
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=1.2e+02 Score=28.53 Aligned_cols=42 Identities=33% Similarity=0.550 Sum_probs=30.5
Q ss_pred ccCCccc---ccchhhHHHHHHhhcCCCCCccHHHHHHHHHHHHHHH
Q 046913 145 DKNGGFI---CNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQ 188 (261)
Q Consensus 145 d~~G~F~---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~ 188 (261)
+.+|-|- .-|+||-..|-.+-- ....|. |=.|..||++||..
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~e~-LLnaLRfTTKHlNd 308 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQSEC-LLNALRFTTKHLND 308 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhhHH-HHHHHHHHHhhcCC
Confidence 3567776 679999998887654 334444 55789999999973
Done!