AT3G52050 protein (Arabidopsis thaliana)

STRING 9.05

AT3G52050 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	AT3G52050	5'-3' exonuclease family protein; 5'-3' exonuclease family protein; FUNCTIONS IN- 5'-3' exonuclease activity, DNA binding, catalytic activity; CONTAINS InterPro DOMAIN/s- 5'-3' exonuclease (InterPro-IPR002421), Helix-hairpin-helix motif, class 2 (InterPro-IPR008918); BEST Arabidopsis thaliana protein match is- 5'-3' exonuclease family protein (TAIR-AT1G34380.2); Has 6752 Blast hits to 6747 proteins in 1396 species- Archae - 3; Bacteria - 3268; Metazoa - 5; Fungi - 10; Plants - 48; Viruses - 26; Other Eukaryotes - 3392 (source- NCBI BLink). (448 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	POLGAMMA1	POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding / DNA-directed DNA polymerase/ n [...] (1034 aa)	•			0.707
	POLGAMMA2	POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase; DNA Polymerase gamma [...] (1050 aa)	•			0.665
	AT4G10470	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (388 aa)			•	0.484
	GCP1	glycoprotease M22 family protein; glycoprotease M22 family protein; FUNCTIONS IN- endopeptidase [...] (480 aa)		•		0.477
	AT5G58720	PRLI-interacting factor, putative; PRLI-interacting factor, putative; FUNCTIONS IN- damaged DNA [...] (519 aa)			•	0.462
	ATHB-2	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / protein homodimerization/ seque [...] (284 aa)			•	0.462
	APC8	APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding; anaphase-promoting complex or cyclosome s [...] (579 aa)			•	0.462
	AT3G27960	kinesin light chain-related; kinesin light chain-related; FUNCTIONS IN- binding; INVOLVED IN- b [...] (663 aa)			•	0.462
	AT2G37150	zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) famil [...] (546 aa)			•	0.462
	HB-2	HB-2 (HOMEOBOX-2); DNA binding / transcription factor; Encodes a homeodomain leucine zipper cla [...] (220 aa)			•	0.462

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: medium (45%)

Permalink