BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046914
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score = 33.1 bits (74), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 33  LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81
           ++ A   +FRH  Y  YK  R PTP+   + L  +K  +  + +  +EV
Sbjct: 65  VFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEV 113


>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
          Length = 832

 Score = 33.1 bits (74), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 33  LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81
           ++ A   +FRH  Y  YK  R PTP+   + L  +K  +  + +  +EV
Sbjct: 65  VFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEV 113


>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
           Bacterium
          Length = 212

 Score = 31.2 bits (69), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 28  LDVHDLYGACGM-------NFRHTLYPSYKNNRPPTPDTIVQGLQY 66
           LD H++Y   G+        + H  Y  YKN RPP  D   + + +
Sbjct: 145 LDAHNVYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYIDAFFKNINW 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,874,351
Number of Sequences: 62578
Number of extensions: 102680
Number of successful extensions: 224
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 3
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)