BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046914
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA
PE=3 SV=1
Length = 871
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82
++ + G NFRH +YP YK NRPP P+ ++ L ++ + ++ ++E N
Sbjct: 59 VFDSGGKNFRHEIYPEYKANRPPPPEDLIAQLPLVRDVARNLNFPILEKN 108
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82
++ + G NFRH +YP YK NRPP P+ +V L ++ ++ ++E N
Sbjct: 59 VFDSGGKNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILEKN 108
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82
++ + G NFRH +YP YK NRPP P+ ++ L ++ ++ ++E N
Sbjct: 59 VFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKN 108
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82
++ + G NFRH +YP YK NRPP P+ ++ L ++ ++ ++E N
Sbjct: 59 VFDSGGKNFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKN 108
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
++ A G FR L+ YK++RPP PD + ++ L A +KAM + ++ V+ + D
Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 115
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
++ A G FR L+ YK++RPP PD + ++ L A +KAM + ++ V+ + D
Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 115
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
++ A G FR ++ YK++RPP PD + + +Q L I+A+ I ++ V + D
Sbjct: 61 VFDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEAD 115
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 2 GESYGLLWRGFLSYNIRHDTYMTDITLDVHDLYGAC-----GMNFRHTLYPSYKNNRPPT 56
GE G L+ GF S ++ + D YGA G NFRH +Y +YK NRP
Sbjct: 31 GEPVGALY-GFTSMLLK-------LLSDFKPQYGAIVFDSGGKNFRHKIYQNYKANRPTP 82
Query: 57 PDTIVQGLQYLKASIKAMSIKVIEVN 82
P+ ++ L ++ ++ ++E N
Sbjct: 83 PEDLIGQLPLIRDVASHLNFAILEKN 108
>sp|A0KZ94|XNI_SHESA Protein Xni OS=Shewanella sp. (strain ANA-3) GN=xni PE=3 SV=1
Length = 260
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 17 IRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSI 76
I H T++T + + M++R LYP YK R P P+ + GL L+ +K++ I
Sbjct: 43 IHHPTHVTIV-------WDGDEMSWRKQLYPDYKKGRKPMPEPLAAGLPALQEHLKSVQI 95
Query: 77 KVIEVNVMYED 87
+ I +D
Sbjct: 96 QSIYAAAEADD 106
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
++ A G FR L+ YK NRP PD + ++ L AS++A+ + ++ V + D
Sbjct: 58 VFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEAD 112
>sp|B8EAT2|XNI_SHEB2 Protein Xni OS=Shewanella baltica (strain OS223) GN=xni PE=3 SV=1
Length = 262
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVI 79
+++R LYP+YK R P P+ + QGL L+ + AM I I
Sbjct: 58 ISWRKQLYPNYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI 98
>sp|Q0HSY6|XNI_SHESR Protein Xni OS=Shewanella sp. (strain MR-7) GN=xni PE=3 SV=1
Length = 260
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
+++R LYP YK R P P+ + GL L+ +K++ I+ I +D
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAAGLSALQEHLKSLPIQSIYAAAEADD 106
>sp|Q0HGN0|XNI_SHESM Protein Xni OS=Shewanella sp. (strain MR-4) GN=xni PE=3 SV=1
Length = 260
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
+++R LYP YK R P P+ + GL L+ +K++ I+ I +D
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAAGLSALQEHLKSLPIQSIYAAAEADD 106
>sp|A6WL18|XNI_SHEB8 Protein Xni OS=Shewanella baltica (strain OS185) GN=xni PE=3 SV=1
Length = 262
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVI 79
+++R LYP YK R P P+ + QGL L+ + AM I I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI 98
>sp|A9KTM9|XNI_SHEB9 Protein Xni OS=Shewanella baltica (strain OS195) GN=xni PE=3 SV=1
Length = 262
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVI 79
+++R LYP YK R P P+ + QGL L+ + AM I I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI 98
>sp|A3D2C6|XNI_SHEB5 Protein Xni OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=xni PE=3 SV=1
Length = 262
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVI 79
+++R LYP YK R P P+ + QGL L+ + AM I I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI 98
>sp|A4Y4Y4|XNI_SHEPC Protein Xni OS=Shewanella putrefaciens (strain CN-32 / ATCC
BAA-453) GN=xni PE=3 SV=1
Length = 262
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
+++R LYP YK R P P+ + QGL+ L+ + ++I I +D
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASIYAAAEADD 106
>sp|A1RLT6|XNI_SHESW Protein Xni OS=Shewanella sp. (strain W3-18-1) GN=xni PE=3 SV=1
Length = 262
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
+++R LYP YK R P P+ + QGL+ L+ + ++I I +D
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASIYAAAEADD 106
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 2 GESYGLLWRGFLSYNIRHDTYMTDITLD-VHDLYGACGMNFRHTLYPSYKNNRPPTPDTI 60
GE G L+ GF S ++ ++D V ++ + G NFRH +Y +YK NRP P +
Sbjct: 31 GEPVGALY-GFTSMLLK---LLSDFKPQYVAIVFDSGGKNFRHKIYQNYKANRPLPPKDL 86
Query: 61 VQGLQYLKASIKAMSIKVIEVN 82
+ L ++ ++E N
Sbjct: 87 IAQLPLVRDVASNFKFAILEKN 108
>sp|A8H6V6|XNI_SHEPA Protein Xni OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=xni PE=3 SV=1
Length = 256
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 38 GMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
+++R TL+P YK R P P+ + GL +KA + I ++ + +D
Sbjct: 57 AISWRKTLFPDYKKGRKPMPEALANGLNDIKAYLAEHHIHSVDADSEADD 106
>sp|A1S8B8|XNI_SHEAM Protein Xni OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
GN=xni PE=3 SV=1
Length = 253
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 38 GMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
+++R LY YK R P P+ + +GL LK ++ + + + + +D
Sbjct: 57 AISWRKHLYEDYKKGRKPMPEALAKGLPALKTKLETLDVHSVNADSEADD 106
>sp|C5BHA5|XNI_EDWI9 Protein Xni OS=Edwardsiella ictaluri (strain 93-146) GN=xni PE=3
SV=1
Length = 253
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 40 NFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSI 76
++RH L P YK R PD + Q ++ L+A+ A +
Sbjct: 57 SWRHRLLPGYKAGRQAMPDALAQEMESLRAAFTAQGV 93
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVI 79
FRH +YK+NR TP+ + L YL+ ++A++++ I
Sbjct: 75 FRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTI 113
>sp|Q6D8F6|XNI_ERWCT Protein Xni OS=Erwinia carotovora subsp. atroseptica (strain SCRI
1043 / ATCC BAA-672) GN=xni PE=3 SV=1
Length = 260
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 40 NFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIK 77
++RH L P YK R P PD + Q L +K + A+ ++
Sbjct: 57 SWRHQLLPDYKAGRTPMPDNLKQELPQIKTAFAAVGVE 94
>sp|B1KQX1|XNI_SHEWM Protein Xni OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=xni
PE=3 SV=1
Length = 252
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 38 GMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYED 87
++R TLY YK R P P+ + + L LK + +++ I+ +D
Sbjct: 57 ATSWRKTLYEDYKKGRKPMPEALAKSLPALKTHLSELNVNSIDAEAEADD 106
>sp|A1SYB8|XNI_PSYIN Protein Xni OS=Psychromonas ingrahamii (strain 37) GN=xni PE=3
SV=1
Length = 262
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 40 NFRHTLYPSYKNNRPPTPDTIVQGL 64
++RH +YP YK R P P+ + QGL
Sbjct: 65 SWRHQIYPEYKQGRKPIPELLKQGL 89
>sp|Q8EGP9|XNI_SHEON Protein Xni OS=Shewanella oneidensis (strain MR-1) GN=xni PE=3
SV=2
Length = 261
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVI 79
+++R LYP YK R P P+ + GL L+ ++ + I+ I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQSI 98
>sp|A7MR03|XNI_CROS8 Protein Xni OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=xni
PE=3 SV=1
Length = 251
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 36 ACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLK 68
A +RH L P YK RPP PD + Q + L+
Sbjct: 53 ARAQGWRHQLLPDYKAGRPPMPDDLHQEMPALR 85
>sp|P57506|EX53_BUCAI 5'-3' exonuclease OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU431 PE=3 SV=1
Length = 286
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81
FR+ L+ YK NR PD +V +Q L +K + IK + +
Sbjct: 70 FRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTI 110
>sp|A6TD79|XNI_KLEP7 Protein Xni OS=Klebsiella pneumoniae subsp. pneumoniae (strain
ATCC 700721 / MGH 78578) GN=xni PE=3 SV=1
Length = 251
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 40 NFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK R P P+T+V + L+A+ + I+
Sbjct: 57 GWRHQRLPEYKAGRAPMPETLVAEMPALRAAFEQRGIRC 95
>sp|B5XUZ0|XNI_KLEP3 Protein Xni OS=Klebsiella pneumoniae (strain 342) GN=xni PE=3
SV=1
Length = 251
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 40 NFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK R P P+T+V + L+A+ + I+
Sbjct: 57 GWRHQRLPEYKAGRAPMPETLVAEMPALRAAFEQRGIRC 95
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 38 GMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIE 80
G R + Y YK NR P PD + + Y++ + A +I +IE
Sbjct: 60 GREARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIE 102
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81
++ A +FRH Y +YK R PTP+ + L +K + + +EV
Sbjct: 66 VFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEV 114
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81
++ A +FRH Y +YK R PTP+ + L +K + + +EV
Sbjct: 66 VFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEV 114
>sp|Q7N8Q9|XNI_PHOLL Protein Xni OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=xni PE=3 SV=1
Length = 252
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 40 NFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSI 76
++RH + P YK R P PD + Q + ++AS + +
Sbjct: 56 SWRHQILPDYKAGRSPMPDNLQQEMPQIRASFEQQGV 92
>sp|A8GIF8|XNI_SERP5 Protein Xni OS=Serratia proteamaculans (strain 568) GN=xni PE=3
SV=1
Length = 251
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 40 NFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSI 76
++RH + P YK R P PD + Q + L+ + +++ +
Sbjct: 57 SWRHQILPDYKAGRSPMPDNLQQEMPQLRQAFESLGV 93
>sp|B5RDV0|XNI_SALG2 Protein Xni OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)
GN=xni PE=3 SV=2
Length = 251
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + I+
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRC 95
>sp|B5QWQ6|XNI_SALEP Protein Xni OS=Salmonella enteritidis PT4 (strain P125109) GN=xni
PE=3 SV=2
Length = 251
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + I+
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRC 95
>sp|B5FTX5|XNI_SALDC Protein Xni OS=Salmonella dublin (strain CT_02021853) GN=xni PE=3
SV=1
Length = 251
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + I+
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRC 95
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 34 YGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81
+ A +FRH Y +YK R PTP+ + L +K + + + +EV
Sbjct: 65 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEV 112
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1
SV=1
Length = 832
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 33 LYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81
++ A +FRH Y YK R PTP+ + L +K + + + +EV
Sbjct: 65 VFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEV 113
>sp|B4TUJ1|XNI_SALSV Protein Xni OS=Salmonella schwarzengrund (strain CVM19633) GN=xni
PE=3 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRC 95
>sp|Q8Z433|XNI_SALTI Protein Xni OS=Salmonella typhi GN=xni PE=3 SV=2
Length = 251
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRC 95
>sp|Q8ZMC9|XNI_SALTY Protein Xni OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=xni PE=3 SV=2
Length = 251
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRC 95
>sp|A9N2I4|XNI_SALPB Protein Xni OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=xni PE=3 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRC 95
>sp|B5F4R7|XNI_SALA4 Protein Xni OS=Salmonella agona (strain SL483) GN=xni PE=3 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRC 95
>sp|Q9KTK4|XNI_VIBCH Protein Xni OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=xni PE=3 SV=2
Length = 259
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLK 68
+R L P+YK NR P PD + QG+ ++
Sbjct: 63 WRAELLPTYKANRKPMPDVLQQGIDAIQ 90
>sp|B4TGM7|XNI_SALHS Protein Xni OS=Salmonella heidelberg (strain SL476) GN=xni PE=3
SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRC 95
>sp|B5BF27|XNI_SALPK Protein Xni OS=Salmonella paratyphi A (strain AKU_12601) GN=xni
PE=3 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRC 95
>sp|Q5PEL3|XNI_SALPA Protein Xni OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=xni PE=3 SV=3
Length = 251
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 FRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKV 78
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRC 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,373,171
Number of Sequences: 539616
Number of extensions: 1249206
Number of successful extensions: 2250
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2160
Number of HSP's gapped (non-prelim): 95
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)