Query 046914
Match_columns 90
No_of_seqs 113 out of 1024
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7i_A Ribonuclease H, RNAse H 99.9 1.8E-28 6.1E-33 182.5 1.3 82 2-88 37-133 (305)
2 1exn_A 5'-exonuclease, 5'-nucl 99.9 8.5E-25 2.9E-29 161.8 0.8 80 2-88 39-130 (290)
3 1bgx_T TAQ DNA polymerase; DNA 99.8 1.6E-22 5.4E-27 165.6 0.0 81 2-88 38-120 (832)
4 2izo_A FEN1, flap structure-sp 99.8 3.9E-19 1.3E-23 133.1 4.0 79 2-88 49-152 (346)
5 1a76_A Flap endonuclease-1 pro 99.7 1.3E-18 4.3E-23 129.2 4.5 79 2-88 52-155 (326)
6 3ory_A Flap endonuclease 1; hy 99.7 8.6E-19 2.9E-23 132.6 0.7 79 2-88 66-169 (363)
7 3q8k_A Flap endonuclease 1; he 99.7 3.7E-18 1.3E-22 128.1 3.3 79 2-88 57-160 (341)
8 1rxw_A Flap structure-specific 99.7 1.4E-18 4.7E-23 129.5 0.8 79 2-88 52-154 (336)
9 1ul1_X Flap endonuclease-1; pr 99.7 2.3E-17 7.8E-22 124.9 4.0 79 2-88 57-160 (379)
10 1b43_A Protein (FEN-1); nuclea 99.6 1.3E-16 4.6E-21 118.9 4.7 79 2-88 52-155 (340)
11 3qe9_Y Exonuclease 1; exonucle 98.5 1.8E-07 6.2E-12 70.3 5.5 80 2-88 49-153 (352)
12 3kz5_E Protein SOPB; partition 79.0 1.4 4.9E-05 24.4 2.3 23 52-74 28-50 (52)
13 3fs2_A 2-dehydro-3-deoxyphosph 66.5 4.2 0.00014 29.8 2.9 31 51-82 84-119 (298)
14 3sz8_A 2-dehydro-3-deoxyphosph 62.8 6.8 0.00023 28.5 3.4 24 59-82 75-98 (285)
15 2nrr_A Uvrabc system protein C 60.4 19 0.00066 24.0 5.1 22 61-82 89-112 (159)
16 3ugs_B Undecaprenyl pyrophosph 59.2 25 0.00084 24.7 5.7 50 23-81 6-56 (225)
17 3av0_A DNA double-strand break 53.9 36 0.0012 24.6 6.1 49 16-85 54-105 (386)
18 2rod_B NOXA, noxaa; MCL-1, apo 53.1 12 0.00041 17.6 2.2 16 55-70 2-17 (27)
19 3td3_A Outer membrane protein 53.0 28 0.00096 21.1 4.7 35 55-90 24-58 (123)
20 2qkf_A 3-deoxy-D-manno-octulos 52.6 12 0.00041 26.8 3.3 24 59-82 70-93 (280)
21 3t1i_A Double-strand break rep 52.5 39 0.0013 25.6 6.3 56 16-88 65-152 (431)
22 3oon_A Outer membrane protein 52.3 24 0.00083 21.4 4.3 39 51-90 23-61 (123)
23 2nrt_A Uvrabc system protein C 51.9 25 0.00085 24.6 4.7 22 61-82 94-117 (220)
24 3tml_A 2-dehydro-3-deoxyphosph 49.7 11 0.00038 27.3 2.7 23 60-82 73-95 (288)
25 2hqs_H Peptidoglycan-associate 48.5 32 0.0011 20.9 4.5 34 56-90 17-50 (118)
26 2vg0_A Short-chain Z-isoprenyl 46.6 3.7 0.00013 28.8 -0.3 51 23-82 2-54 (227)
27 1uf3_A Hypothetical protein TT 45.6 51 0.0017 20.9 5.3 49 16-86 26-74 (228)
28 1f75_A Undecaprenyl pyrophosph 45.0 26 0.00088 24.8 4.0 51 23-82 20-71 (249)
29 1oef_A Apolipoprotein E; glyco 44.4 16 0.00055 16.9 2.0 20 54-73 4-23 (26)
30 2d2r_A Undecaprenyl pyrophosph 43.5 28 0.00096 24.6 4.0 51 23-82 15-66 (245)
31 3otr_A Enolase; structural gen 43.5 11 0.00036 29.3 1.9 57 25-88 245-310 (452)
32 3cyp_B Chemotaxis protein MOTB 43.1 40 0.0014 21.0 4.4 38 52-90 10-49 (138)
33 3ib7_A ICC protein; metallopho 42.6 49 0.0017 22.5 5.1 46 23-86 66-111 (330)
34 2vg3_A Undecaprenyl pyrophosph 42.5 3.2 0.00011 30.2 -1.1 51 23-82 55-106 (284)
35 2nwr_A 2-dehydro-3-deoxyphosph 42.5 22 0.00076 25.3 3.4 24 59-82 59-82 (267)
36 1o60_A 2-dehydro-3-deoxyphosph 41.9 13 0.00046 26.8 2.1 23 60-82 74-96 (292)
37 2aiz_P Outer membrane protein 41.8 48 0.0016 20.7 4.6 35 55-90 40-74 (134)
38 2q8u_A Exonuclease, putative; 41.5 83 0.0028 22.0 6.3 22 16-38 55-77 (336)
39 2x7v_A Probable endonuclease 4 41.1 19 0.00063 24.2 2.7 22 57-78 265-286 (287)
40 1olt_A Oxygen-independent copr 40.7 51 0.0017 24.6 5.2 74 2-82 213-288 (457)
41 2vqe_K 30S ribosomal protein S 40.4 23 0.00078 22.7 2.9 43 39-81 40-82 (129)
42 2kgw_A Outer membrane protein 39.7 47 0.0016 20.3 4.2 40 50-90 29-68 (129)
43 3sgv_B Undecaprenyl pyrophosph 38.5 43 0.0015 23.9 4.3 52 22-82 16-68 (253)
44 1vk2_A Uracil-DNA glycosylase 37.9 29 0.00098 23.5 3.2 35 51-85 105-139 (204)
45 3r8n_K 30S ribosomal protein S 36.4 27 0.00092 22.0 2.7 42 40-81 31-72 (117)
46 2k5e_A Uncharacterized protein 36.2 9.1 0.00031 22.0 0.4 27 57-83 11-37 (73)
47 2b7e_A PRE-mRNA processing pro 35.8 2.4 8.1E-05 24.1 -2.2 16 38-53 44-59 (59)
48 4erh_A Outer membrane protein 35.2 50 0.0017 20.6 3.9 41 49-90 26-68 (148)
49 1r1m_A Outer membrane protein 34.3 45 0.0015 21.7 3.6 38 52-90 22-59 (164)
50 4h8e_A Undecaprenyl pyrophosph 34.1 44 0.0015 23.8 3.8 52 22-82 23-75 (256)
51 2k1s_A Inner membrane lipoprot 33.8 72 0.0025 20.0 4.5 41 49-90 38-78 (149)
52 2q0o_C Probable transcriptiona 33.4 25 0.00087 22.1 2.1 25 59-83 80-105 (107)
53 1ii7_A MRE11 nuclease; RAD50, 31.9 1.3E+02 0.0044 21.0 7.0 21 16-37 34-54 (333)
54 1ui0_A Uracil-DNA glycosylase; 30.9 38 0.0013 22.9 2.9 35 51-85 88-123 (205)
55 3v1a_A Computational design, M 30.6 41 0.0014 18.1 2.4 18 56-73 2-19 (48)
56 1yzm_A FYVE-finger-containing 30.6 42 0.0014 18.3 2.5 19 55-73 2-20 (51)
57 2k53_A A3DK08 protein; NESG, C 30.5 16 0.00056 21.1 0.8 31 52-82 4-34 (76)
58 3tho_B Exonuclease, putative; 30.1 1.5E+02 0.0053 21.3 6.6 20 16-36 37-57 (379)
59 3u5c_O RP59A, 40S ribosomal pr 29.8 65 0.0022 20.8 3.7 42 40-81 39-81 (137)
60 2fi0_A Conserved domain protei 29.4 7 0.00024 22.8 -1.0 26 57-82 15-40 (81)
61 1jke_A O145, D-Tyr-trnaTyr dea 28.8 78 0.0027 20.8 4.0 36 43-78 79-120 (145)
62 3d03_A Phosphohydrolase; glyce 28.6 93 0.0032 20.3 4.6 42 23-86 41-82 (274)
63 4did_B Inositol phosphate phos 28.1 44 0.0015 22.1 2.7 30 42-71 74-103 (152)
64 3i4a_A N(G),N(G)-dimethylargin 26.7 85 0.0029 22.4 4.3 55 23-83 35-90 (308)
65 3qas_B Undecaprenyl pyrophosph 25.6 10 0.00035 27.0 -0.8 50 25-83 19-69 (253)
66 3s0y_A Motility protein B; pep 25.4 1.2E+02 0.0041 19.9 4.6 41 49-90 62-104 (193)
67 2k6x_A Sigma-A, RNA polymerase 25.3 53 0.0018 18.4 2.4 22 61-82 42-63 (72)
68 3nbm_A PTS system, lactose-spe 24.7 24 0.0008 21.7 0.8 27 57-83 60-86 (108)
69 1jmx_G Amine dehydrogenase; ox 23.3 11 0.00036 22.5 -0.9 15 75-90 22-36 (79)
70 3s06_A Motility protein B; pep 23.2 1.1E+02 0.0037 19.5 4.0 41 49-90 35-77 (166)
71 3kzp_A LMO0111 protein, putati 23.0 1.4E+02 0.0048 19.4 4.6 59 27-86 142-209 (235)
72 3zqu_A Probable aromatic acid 23.0 58 0.002 22.2 2.7 25 52-78 170-194 (209)
73 4fbw_A DNA repair protein RAD3 22.8 1.6E+02 0.0054 22.1 5.2 23 16-39 46-68 (417)
74 3qtp_A Enolase 1; glycolysis, 22.6 50 0.0017 25.4 2.5 30 55-88 279-308 (441)
75 2h2m_A Protein MURR1, COMM dom 22.4 9.7 0.00033 24.1 -1.3 36 39-80 33-68 (108)
76 3ose_A Serine/threonine-protei 22.3 72 0.0025 19.8 2.8 23 55-80 37-59 (120)
77 3hp4_A GDSL-esterase; psychrot 22.2 87 0.003 19.1 3.3 50 16-81 60-109 (185)
78 1z0k_B FYVE-finger-containing 22.1 84 0.0029 18.1 2.9 20 54-73 19-38 (69)
79 2hfv_A Hypothetical protein RP 21.9 59 0.002 19.9 2.3 25 57-83 30-54 (97)
80 3o3m_B Beta subunit 2-hydroxya 21.7 55 0.0019 24.0 2.5 25 63-87 331-355 (385)
81 3guv_A Site-specific recombina 21.6 1.1E+02 0.0037 19.2 3.6 21 59-79 23-43 (167)
82 2dbo_A D-tyrosyl-tRNA(Tyr) dea 21.5 1.2E+02 0.0041 19.9 3.9 36 43-78 79-120 (148)
83 1zo0_A ODC-AZ, ornithine decar 21.3 1.2E+02 0.0042 19.3 3.8 22 11-32 62-84 (126)
84 1spv_A Putative polyprotein/ph 20.6 1.6E+02 0.0055 19.2 4.5 48 43-90 80-127 (184)
85 3j20_M 30S ribosomal protein S 20.5 1.1E+02 0.0038 19.7 3.5 35 47-81 47-81 (137)
86 2kg4_A Growth arrest and DNA-d 20.5 96 0.0033 20.7 3.3 28 56-83 65-94 (165)
87 2nxf_A Putative dimetal phosph 20.4 1.6E+02 0.0055 19.4 4.5 54 16-86 45-98 (322)
88 3sop_A Neuronal-specific septi 20.3 64 0.0022 22.3 2.5 28 56-83 154-181 (270)
89 2ilr_A Protein FACE, fanconi a 20.3 54 0.0019 23.5 2.1 21 54-74 6-26 (264)
No 1
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.94 E-value=1.8e-28 Score=182.52 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=76.1
Q ss_pred CcchHHHHHH-HHhh--hhhhc---cCCCCeEEEeeeCCCCC-CCccccccCccccCCCCCCchhHHHhH--------HH
Q 046914 2 GESYGLLWRG-FLSY--NIRHD---TYMTDITLDVHDLYGAC-GMNFRHTLYPSYKNNRPPTPDTIVQGL--------QY 66 (90)
Q Consensus 2 G~pt~ai~~g-f~~~--~l~~~---~~~p~~i~v~fD~fD~~-~~t~R~~~yp~YKa~R~~~P~~L~~Ql--------~~ 66 (90)
|.|||||+ | |+++ +++++ . +|+|++|||| .+ ++||||++||+|||||++||++|..|+ +.
T Consensus 37 g~~tnav~-ggf~~~L~~ll~~~k~~-~P~~iavaFD---~~~~~tfR~elyp~YKanR~~~PeeL~~Q~~~l~~Qi~p~ 111 (305)
T 3h7i_A 37 KINLSMVR-HLILNSIKFNVKKAKTL-GYTKIVLCID---NAKSGYWRRDFAYYYKKNRGKAREESTWDWEGYFESSHKV 111 (305)
T ss_dssp CCCHHHHH-HHHHHHHHHHHHHHHHT-TCCEEEEECC---CCTTCCHHHHHSTTTTHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CcchHHHH-HHHHHHHHHHHHhhhcc-CCCEEEEEec---CCCCcchHhhhCHHhccCCCCCCHHHHHHHHHhhhhhHHH
Confidence 78999998 6 9999 77766 4 9999999999 65 689999999999999999999999888 89
Q ss_pred HHHHHHHcCCceEEeccccccc
Q 046914 67 LKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 67 i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
|+++|++|||++++.+|.||||
T Consensus 112 ike~l~a~gi~~l~~~G~EADD 133 (305)
T 3h7i_A 112 IDELKAYMPYIVMDIDKYEAND 133 (305)
T ss_dssp HHHHHHHSSSEEECCTTCCHHH
T ss_pred HHHHHHHCCCCEEccCCccHHH
Confidence 9999999999999999999997
No 2
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.89 E-value=8.5e-25 Score=161.77 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=76.6
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCc-------hhHHHh-HHHHHHHH
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTP-------DTIVQG-LQYLKASI 71 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P-------~~L~~Q-l~~i~~~l 71 (90)
|.| ||+ ||+++ ++++. .+|+|++|||| .++++|||++||+||+||+++| ++|..| ++.++++|
T Consensus 39 G~p--av~-Gf~~~l~~ll~~-~~p~~~vvvFD---~~~~tfR~~~~~~YKa~R~~~p~~~~~~~e~L~~q~~~~ikell 111 (290)
T 1exn_A 39 KKP--FAS-SYVSTIQSLAKS-YSARTTIVLGD---KGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAF 111 (290)
T ss_dssp SSC--CHH-HHHHHHHHHHHH-TTEEEEEEECC---BSCCHHHHHHCTTTTHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred Cch--HHH-HHHHHHHHHHHH-cCCCeEEEEEc---CCCchhhhhCcHHHHcCCCCCCccccccchhHHHhhHHHHHHHH
Confidence 677 999 99999 89999 79999999999 7789999999999999999999 999999 99999999
Q ss_pred HH--cCCceEEeccccccc
Q 046914 72 KA--MSIKVIEVNVMYEDA 88 (90)
Q Consensus 72 ~~--lGi~~~~~~g~eeD~ 88 (90)
++ |||++++.+|.||||
T Consensus 112 ~~~~~gip~i~~~g~EADD 130 (290)
T 1exn_A 112 ELCKTTFPTFTIRGVEADD 130 (290)
T ss_dssp HHHTTTSCEECCTTBCHHH
T ss_pred HhhCCCCcEEEECCcCHHH
Confidence 99 999999999999997
No 3
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.84 E-value=1.6e-22 Score=165.59 Aligned_cols=81 Identities=28% Similarity=0.450 Sum_probs=77.4
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceE
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVI 79 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~ 79 (90)
|.|||||+ ||+++ ++++. +. +|++|||| .++++|||++||+||+||+++|++|..|++.|+++|++|||+++
T Consensus 38 G~~t~av~-gf~~~l~~ll~~-~~-~~~v~vFD---g~~~tfR~~~~~~YKa~R~~~pe~l~~q~~~i~~~l~~~gi~~i 111 (832)
T 1bgx_T 38 GEPVQAVY-GFAKSLLKALKE-DG-DAVIVVFD---AKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARL 111 (832)
T ss_dssp SCBCSSST-THHHHHHHGGGT-CC-SCCCCCCC---CSSSCSSSGGGGTTTSCCCCCCTTSTTGGGTHHHHHHHTTCCCC
T ss_pred CcEehHHH-HHHHHHHHHHHH-cC-CeEEEEEc---CCCccccccchHHHHhccccChHHHHHHHHHHHHHHHHCCCCEE
Confidence 89999999 99999 89888 57 99999999 77789999999999999999999999999999999999999999
Q ss_pred Eeccccccc
Q 046914 80 EVNVMYEDA 88 (90)
Q Consensus 80 ~~~g~eeD~ 88 (90)
..+|.||||
T Consensus 112 ~~pg~EADD 120 (832)
T 1bgx_T 112 EVPGYEADD 120 (832)
T ss_dssp CCSSSCHHH
T ss_pred EeCCccHHH
Confidence 999999996
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.75 E-value=3.9e-19 Score=133.09 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=47.9
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHH------------------
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIV------------------ 61 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~------------------ 61 (90)
|.||+||+ ||+++ ++++.+..| ++||| ...++||++.|++||++|.++|++|.
T Consensus 49 G~~t~al~-g~~~~~~~ll~~~i~P---v~vFD---G~~~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~ 121 (346)
T 2izo_A 49 GRVTSHLS-GLFYRTINILEEGVIP---IYVFD---GKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAI 121 (346)
T ss_dssp SCBCHHHH-HHHHHHHHHHHHTEEE---EEEEC---C-------------------------------------------
T ss_pred CCccHHHH-HHHHHHHHHHHCCCcE---EEEEC---CCCcchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhc
Confidence 88999999 99998 777653345 78999 77889999999999999999999997
Q ss_pred -----HhHHHHHHHHHHcCCceEEeccccccc
Q 046914 62 -----QGLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 62 -----~Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
.|++.++++|++|||+++..|| ||||
T Consensus 122 ~~vt~~~~~~~~~lL~~~gi~~i~ap~-EADa 152 (346)
T 2izo_A 122 LRLSNIMVEESKKLLRAMGIPIVQAPS-EGEA 152 (346)
T ss_dssp ---CHHHHHHHHHHHHHHTCCEEECSS-CHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEcCC-cHHH
Confidence 8999999999999999999999 9997
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.73 E-value=1.3e-18 Score=129.20 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=70.6
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHH-----------------
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQ----------------- 62 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~----------------- 62 (90)
|.||++|+ ||+++ +++.....| ++||| ...++||++.|++||++|.++|++|..
T Consensus 52 G~~t~~l~-g~~~~l~~ll~~~i~P---v~vFD---G~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~ 124 (326)
T 1a76_A 52 GEITSAYN-GVFYKTIHLLENDITP---IWVFD---GEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRV 124 (326)
T ss_dssp SCBCHHHH-HHHHHHHHHHHTTCEE---EEEEC---CCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGG
T ss_pred CCccHHHH-HHHHHHHHHHHCCCeE---EEEEe---CcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhc
Confidence 88999999 99998 764432445 88999 778899999999999999999999976
Q ss_pred ------hHHHHHHHHHHcCCceEEeccccccc
Q 046914 63 ------GLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 63 ------Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
|++.++++|+++||+++..|| ||||
T Consensus 125 ~~vt~~~~~~~~~lL~~~gi~~i~apg-EAD~ 155 (326)
T 1a76_A 125 SYLTPKMVENCKYLLSLMGIPYVEAPS-EGEA 155 (326)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCEEECSS-CHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEECCc-cHHH
Confidence 999999999999999999999 9997
No 6
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=99.71 E-value=8.6e-19 Score=132.62 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=70.6
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHh----------------
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQG---------------- 63 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Q---------------- 63 (90)
|.|||||+ ||+++ +++..+..| ++||| .+.++||++.|++||++|.++|++|..|
T Consensus 66 G~~T~al~-gf~~r~~~ll~~~i~P---v~VFD---g~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~ 138 (363)
T 3ory_A 66 GRITSHLS-GLFYRTINIVEAGIKP---VYVFD---GKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMS 138 (363)
T ss_dssp SCBCHHHH-HHHHHHHHHHHTTCEE---EEEEC---SSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCC
T ss_pred CCCccHHH-HHHHHHHHHHHcCCCc---EEEEc---CCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhcc
Confidence 89999999 99987 766542455 46788 7889999999999999999999999987
Q ss_pred -------HHHHHHHHHHcCCceEEeccccccc
Q 046914 64 -------LQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 64 -------l~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
++.++++|++|||+++..+| ||||
T Consensus 139 ~~vt~~~~~~i~~lL~~~GIp~i~apg-EADa 169 (363)
T 3ory_A 139 AKLTEEMVRDAKSLLDAMGIPWVQAPA-EGEA 169 (363)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEECSS-CHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeCc-cHHH
Confidence 99999999999999999998 9886
No 7
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.70 E-value=3.7e-18 Score=128.09 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=69.9
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCC------------CCCchhH-------
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNR------------PPTPDTI------- 60 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R------------~~~P~~L------- 60 (90)
|.|||||+ ||+++ ++++....|.| ||| .+.++||+++|++||++| .++|++|
T Consensus 57 G~~T~al~-g~~~~~~~ll~~~i~P~~---VFD---g~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~ 129 (341)
T 3q8k_A 57 GETTSHLM-GMFYRTIRMMENGIKPVY---VFD---GKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRL 129 (341)
T ss_dssp SCBCHHHH-HHHHHHHHHHTTTCEEEE---EEC---CCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCchHHH-HHHHHHHHHHHCCCCceE---EEe---CCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhc
Confidence 89999999 99988 77773256766 578 888999999999999655 5699999
Q ss_pred ----HHhHHHHHHHHHHcCCceEEeccccccc
Q 046914 61 ----VQGLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 61 ----~~Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
..|++.++++|++|||+++..|| ||||
T Consensus 130 ~~vt~~q~~~~~~lL~~~gip~i~ap~-EADd 160 (341)
T 3q8k_A 130 VKVTKQHNDECKHLLSLMGIPYLDAPS-EAEA 160 (341)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEECSS-CHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEECCc-cHHH
Confidence 99999999999999999999998 9997
No 8
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.70 E-value=1.4e-18 Score=129.46 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=70.0
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCc-----------hhHHH------
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTP-----------DTIVQ------ 62 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P-----------~~L~~------ 62 (90)
|.|||||+ ||+++ ++++....| +|||| ...++|||+.|++||++|.++| +++..
T Consensus 52 G~~t~a~~-g~~~~l~~ll~~~i~P---v~vFD---g~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~~~l~~~~~~~~ 124 (336)
T 1rxw_A 52 GRITSHLS-GILYRVSNMVEVGIRP---VFVFD---GEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAG 124 (336)
T ss_dssp SCBCHHHH-HHHHHHHHHHHHTCEE---EEEEC---CSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHC
T ss_pred CCccHHHH-HHHHHHHHHHHCCCEE---EEEEc---CCCCcccccchHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhhc
Confidence 78999999 99998 788762255 88999 7789999999999999999999 77766
Q ss_pred -----hHHHHHHHHHHcCCceEEeccccccc
Q 046914 63 -----GLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 63 -----Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
|++.++++|++|||+++..|| ||||
T Consensus 125 ~vt~~~~~~~~~lL~~~gi~~i~apg-eAEA 154 (336)
T 1rxw_A 125 RVDEYIVDSAKTLLSYMGIPFVDAPS-EGEA 154 (336)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEECSS-CHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEcCc-hHHH
Confidence 999999999999999999998 7654
No 9
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=99.67 E-value=2.3e-17 Score=124.93 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=58.9
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCC------------chhH-------
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPT------------PDTI------- 60 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~------------P~~L------- 60 (90)
|.|||+|+ ||+++ ++++.+..|.| ||| ...++||++.|++||++|.++ |+++
T Consensus 57 G~~t~~l~-g~~~~~~~ll~~~i~P~~---VFD---G~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (379)
T 1ul1_X 57 GETTSHLM-GMFYRTIRMMENGIKPVY---VFD---GKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRL 129 (379)
T ss_dssp --CCHHHH-HHHHHHHHHHHTTCCEEE---EEC---CSCCSCCCCCCCCC-----------------------------C
T ss_pred CCCchHHH-HHHHHHHHHHHCCCCeEE---EEe---CCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhc
Confidence 78999999 99998 77765346654 688 778899999999999999998 7777
Q ss_pred ----HHhHHHHHHHHHHcCCceEEeccccccc
Q 046914 61 ----VQGLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 61 ----~~Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
..|++.++++|++|||+++..+| ||||
T Consensus 130 ~~vt~~~~~~~~~lL~~~Gi~~i~apg-EADd 160 (379)
T 1ul1_X 130 VKVTKQHNDECKHLLSLMGIPYLDAPS-EAEA 160 (379)
T ss_dssp CCCCCSCHHHHHHHHHHHTCCEEECSS-CHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCCeecCCC-cHHH
Confidence 79999999999999999999999 9997
No 10
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.63 E-value=1.3e-16 Score=118.86 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=72.8
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCCCccccccCc---------------cccCCCCCCchhH----
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACGMNFRHTLYP---------------SYKNNRPPTPDTI---- 60 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp---------------~YKa~R~~~P~~L---- 60 (90)
|.||++|+ ||+++ ++++ .+.++++||| ...+++|++.|+ .||++|.++|+++
T Consensus 52 G~~t~~l~-g~~~~l~~ll~---~~i~pv~VFD---G~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~ 124 (340)
T 1b43_A 52 GRITSHLS-GLFYRTINLME---AGIKPVYVFD---GEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRA 124 (340)
T ss_dssp SCBCHHHH-HHHHHHHHHHH---TTCEEEEEEC---CSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTS
T ss_pred CCchHHHH-HHHHHHHHHHh---CCCEEEEEec---CCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 78999999 99998 7754 5789999999 778899999999 7999999999999
Q ss_pred ----HHhHHHHHHHHHHcCCceEEeccccccc
Q 046914 61 ----VQGLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 61 ----~~Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
..|++.++++|+++||+++..| .||||
T Consensus 125 ~~vt~~~~~~~~~lL~~~gip~i~ap-~EADa 155 (340)
T 1b43_A 125 TRVNEMLIEDAKKLLELMGIPIVQAP-SEGEA 155 (340)
T ss_dssp GGGTHHHHHHHHHHHHHHTCCEEECS-SCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEcC-hhHHH
Confidence 8999999999999999999999 59997
No 11
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=98.47 E-value=1.8e-07 Score=70.30 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=57.6
Q ss_pred CcchHHHHHHHHhh--hhhhccCCCCeEEEeeeCCCCCC-Cccccc--------------cCccccCCCCCCchhH----
Q 046914 2 GESYGLLWRGFLSY--NIRHDTYMTDITLDVHDLYGACG-MNFRHT--------------LYPSYKNNRPPTPDTI---- 60 (90)
Q Consensus 2 G~pt~ai~~gf~~~--~l~~~~~~p~~i~v~fD~fD~~~-~t~R~~--------------~yp~YKa~R~~~P~~L---- 60 (90)
|.||+++. ||+.. +++.. +. -..+++|| ... +..|++ .+..||++|.....+.
T Consensus 49 G~~t~~l~-~~~~r~l~~L~~-~g-I~PvfVFD---G~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~ 122 (352)
T 3qe9_Y 49 GEPTDRYV-GFCMKFVNMLLS-HG-IKPILVFD---GCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRS 122 (352)
T ss_dssp TCCCCHHH-HHHHHHHHHHHH-TT-CEEEEEEC---CSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGG
T ss_pred CCCcHHHH-HHHHHHHHHHHH-cC-CEEEEEEC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 88999999 98877 77666 34 56788899 443 344332 3778888873211000
Q ss_pred ----HHhHHHHHHHHHHcCCceEEeccccccc
Q 046914 61 ----VQGLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 61 ----~~Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
..+++.++++|+++||+++..+ .||||
T Consensus 123 ~~vt~~~~~~i~~~L~~~gIp~i~ap-~EADa 153 (352)
T 3qe9_Y 123 INITHAMAHKVIKAARSQGVDCLVAP-YEADA 153 (352)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEECS-SCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEECC-cchHH
Confidence 2578999999999999999988 59997
No 12
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=78.97 E-value=1.4 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=17.5
Q ss_pred CCCCCchhHHHhHHHHHHHHHHc
Q 046914 52 NRPPTPDTIVQGLQYLKASIKAM 74 (90)
Q Consensus 52 ~R~~~P~~L~~Ql~~i~~~l~~l 74 (90)
+|...|+++++||+.|-+-+...
T Consensus 28 d~~~iP~~~IeKIE~lL~e~~k~ 50 (52)
T 3kz5_E 28 DRSRVPTECIEKIEAILKELEKP 50 (52)
T ss_dssp ETTTSCHHHHHHHHHHHHHHC--
T ss_pred ccccCCHHHHHHHHHHHHHHhhc
Confidence 57789999999999887766543
No 13
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=66.47 E-value=4.2 Score=29.84 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=21.3
Q ss_pred CCCCCCchh-----HHHhHHHHHHHHHHcCCceEEec
Q 046914 51 NNRPPTPDT-----IVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 51 a~R~~~P~~-----L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
|+|.. |.. +.+.|.+++++++.+||++++-.
T Consensus 84 apRTs-~~sf~Glg~~~GL~~L~~~~~e~GLpv~Tev 119 (298)
T 3fs2_A 84 ANRTS-LKAARGIGLEKALEVFSDLKKEYGFPVLTDI 119 (298)
T ss_dssp CC----------CCHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCC-CCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 37753 433 45889999999999999999765
No 14
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=62.79 E-value=6.8 Score=28.48 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.8
Q ss_pred hHHHhHHHHHHHHHHcCCceEEec
Q 046914 59 TIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 59 ~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
.+.+.|.+++++++.+||++++-.
T Consensus 75 g~~~GL~~L~~~~~e~Glp~~Tev 98 (285)
T 3sz8_A 75 GLDEGLKIFAEVKARFGVPVITDV 98 (285)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEe
Confidence 356889999999999999999765
No 15
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=60.36 E-value=19 Score=24.03 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHcCC--ceEEec
Q 046914 61 VQGLQYLKASIKAMSI--KVIEVN 82 (90)
Q Consensus 61 ~~Ql~~i~~~l~~lGi--~~~~~~ 82 (90)
..|+..++++|+.+|+ +++.+.
T Consensus 89 kgQl~aA~~vl~elg~~i~v~glA 112 (159)
T 2nrr_A 89 IGQVNAAIEALKEIGKDCPVVGLA 112 (159)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHHHHHHHHcCCCccEEEEE
Confidence 7899999999999994 455443
No 16
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=59.18 E-value=25 Score=24.73 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=27.5
Q ss_pred CCCeEEEeeeCCCCCCCcc-ccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEe
Q 046914 23 MTDITLDVHDLYGACGMNF-RHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81 (90)
Q Consensus 23 ~p~~i~v~fD~fD~~~~t~-R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~ 81 (90)
.|.||+|..| |...| |+.-.|-...||.. ...+..+-+.|..+||.++++
T Consensus 6 ~P~HVAiIMD----GNrRwAk~rgl~r~~GH~~G-----~~~~~~i~~~c~~lGI~~lTl 56 (225)
T 3ugs_B 6 ELKHLAVVMD----GNRRWARAKGFLAKLGYSQG-----VKTMQKLMEVCMEENISNLSL 56 (225)
T ss_dssp CCCEEEEEEC----CCC--------------CHH-----HHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEecc----CcHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHHcCCCEEEE
Confidence 6899999999 55555 44445666666642 334555666788899999875
No 17
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=53.86 E-value=36 Score=24.63 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=31.1
Q ss_pred hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHHH---cCCceEEecccc
Q 046914 16 NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKA---MSIKVIEVNVMY 85 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~---lGi~~~~~~g~e 85 (90)
+.+.. .++|.++++=|+||.+.++ +..+ ..+.+.|.. .|++++.+.|+-
T Consensus 54 ~~~~~-~~~D~VliaGDl~d~~~p~----------------~~~~----~~~~~~l~~L~~~~~pv~~v~GNH 105 (386)
T 3av0_A 54 KKILE-IKPDVVLHSGDLFNDLRPP----------------VKAL----RIAMQAFKKLHENNIKVYIVAGNH 105 (386)
T ss_dssp HHHHT-TCCSEEEECSCSBSSSSCC----------------HHHH----HHHHHHHHHHHHTTCEEEECCCGG
T ss_pred HHHHH-cCCCEEEECCCCCCCCCCC----------------HHHH----HHHHHHHHHHHhcCCcEEEEcCCC
Confidence 45556 5899999999988754221 1222 223333333 489999999864
No 18
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=53.06 E-value=12 Score=17.57 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=13.2
Q ss_pred CCchhHHHhHHHHHHH
Q 046914 55 PTPDTIVQGLQYLKAS 70 (90)
Q Consensus 55 ~~P~~L~~Ql~~i~~~ 70 (90)
+.|+++..|+..|-+-
T Consensus 2 elppefaaqlrkigdk 17 (27)
T 2rod_B 2 ELPPEFAAQLRKIGDK 17 (27)
T ss_dssp CCCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhCCe
Confidence 5799999999887653
No 19
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=53.01 E-value=28 Score=21.12 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=25.4
Q ss_pred CCchhHHHhHHHHHHHHHHcCCceEEeccccccccC
Q 046914 55 PTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDAYG 90 (90)
Q Consensus 55 ~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~~~ 90 (90)
...++-..+|..+.++|....-..+.+.| +.|.-|
T Consensus 24 ~l~~~~~~~L~~~a~~l~~~~~~~i~I~G-htD~~g 58 (123)
T 3td3_A 24 NIKDQYKPEIAKVAEKLSEYPNATARIEG-HTDNTG 58 (123)
T ss_dssp CCCGGGHHHHHHHHHHHHHSTTCEEEEEE-CCCSCS
T ss_pred hcCHHHHHHHHHHHHHHHhCCCceEEEEE-EeCCCC
Confidence 34445566788888888887666688887 888765
No 20
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=52.60 E-value=12 Score=26.78 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.8
Q ss_pred hHHHhHHHHHHHHHHcCCceEEec
Q 046914 59 TIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 59 ~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
+|...+..++++++.+||++++-.
T Consensus 70 ~l~~gl~~l~~~~~~~Gl~~~te~ 93 (280)
T 2qkf_A 70 GLEEGLKIFEKVKAEFGIPVITDV 93 (280)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred chHHHHHHHHHHHHHcCCcEEEec
Confidence 367889999999999999999754
No 21
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=52.52 E-value=39 Score=25.60 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=38.4
Q ss_pred hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHH------------------------
Q 046914 16 NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASI------------------------ 71 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l------------------------ 71 (90)
++++. ..|+.++++=|+||... +.++.+...+..+++++
T Consensus 65 ~~~~~-~~~D~VliaGDlfd~~~----------------~~~~~~~~~~~~L~r~~~~~~~~~~~~lsd~~~~~~~~~~~ 127 (431)
T 3t1i_A 65 RLAQE-NEVDFILLGGDLFHENK----------------PSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFP 127 (431)
T ss_dssp HHHHH-TTCSEEEECSCCBSSSS----------------CCHHHHHHHHHHHHHHHBCSSCCCCEECSCC----------
T ss_pred HHHhh-cCCCEEEEcCccccCCC----------------CCHHHHHHHHHHHHHHhccCCcccceeccchhhcccccccc
Confidence 56666 69999999999887543 33445555555555554
Q ss_pred --------HHcCCceEEeccccccc
Q 046914 72 --------KAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 72 --------~~lGi~~~~~~g~eeD~ 88 (90)
...||+++.+.|.-.+.
T Consensus 128 ~~ny~d~n~~~~ipV~~I~GNHD~~ 152 (431)
T 3t1i_A 128 WVNYQDGNLNISIPVFSIHGNHDDP 152 (431)
T ss_dssp --------CCBCSCEEECCCSSSCC
T ss_pred ccccccccccCCCcEEEEccCCCCc
Confidence 13589999999966544
No 22
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=52.29 E-value=24 Score=21.38 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=28.4
Q ss_pred CCCCCCchhHHHhHHHHHHHHHHcCCceEEeccccccccC
Q 046914 51 NNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDAYG 90 (90)
Q Consensus 51 a~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~~~ 90 (90)
.+.....++-..+|..+.+.|....-..+.+.| +.|.-|
T Consensus 23 ~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~G-htD~~g 61 (123)
T 3oon_A 23 PNSFQILQKEYKKIDLIAKLLEKFKKNNILIEG-HTEQFG 61 (123)
T ss_dssp TTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEE-CCCSCC
T ss_pred CCChhcCHHHHHHHHHHHHHHHHCCCceEEEEE-EeCCCC
Confidence 334444555577888888899888766688997 888765
No 23
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=51.90 E-value=25 Score=24.58 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHcC--CceEEec
Q 046914 61 VQGLQYLKASIKAMS--IKVIEVN 82 (90)
Q Consensus 61 ~~Ql~~i~~~l~~lG--i~~~~~~ 82 (90)
..|+...+++|+.+| |+++.+.
T Consensus 94 kgQl~~a~~vl~~lg~~i~v~gla 117 (220)
T 2nrt_A 94 IGQVNAAIEALKEIGKDCPVVGLA 117 (220)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 799999999999999 4555543
No 24
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=49.72 E-value=11 Score=27.33 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHHHcCCceEEec
Q 046914 60 IVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 60 L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
+.+.|.+++++++.+||++++-.
T Consensus 73 ~~~GL~~L~~~~~e~Glp~~tev 95 (288)
T 3tml_A 73 MDEGLRILSEVKRQLGLPVLTDV 95 (288)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEe
Confidence 45889999999999999999765
No 25
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=48.52 E-value=32 Score=20.88 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=23.0
Q ss_pred CchhHHHhHHHHHHHHHHcCCceEEeccccccccC
Q 046914 56 TPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDAYG 90 (90)
Q Consensus 56 ~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~~~ 90 (90)
..++-..+|..+.+.|....-..+.+.| ++|.-|
T Consensus 17 l~~~~~~~L~~ia~~l~~~p~~~i~I~G-htD~~G 50 (118)
T 2hqs_H 17 IRSDFAQMLDAHANFLRSNPSYKVTVEG-HADERG 50 (118)
T ss_dssp CCGGGHHHHHHHHHHHHHCTTCCEEEEE-CCCSSS
T ss_pred cCHHHHHHHHHHHHHHHhCCCcEEEEEE-ECCCCC
Confidence 3344456777778888877544578887 888754
No 26
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=46.56 E-value=3.7 Score=28.80 Aligned_cols=51 Identities=8% Similarity=-0.065 Sum_probs=32.1
Q ss_pred CCCeEEEeeeCCCCCCCccccc-c-CccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEec
Q 046914 23 MTDITLDVHDLYGACGMNFRHT-L-YPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 23 ~p~~i~v~fD~fD~~~~t~R~~-~-yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
-|.||+|..| +...|-++ - .|....+|. =...+..+-+.|..+||+.+++=
T Consensus 2 iP~HvAiImD----GN~RwA~~~g~l~~~~GH~~-----G~~~l~~i~~~c~~~GI~~lTlY 54 (227)
T 2vg0_A 2 LPRHIAVLCD----GNRRWARSAGYDDVSYGYRM-----GAAKIAEMLRWCHEAGIELATVY 54 (227)
T ss_dssp CCSEEEEECC----CHHHHHHHTTCSCTHHHHHH-----HHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCcEEEEEec----CChHHHHHcCCCchhHHHHH-----HHHHHHHHHHHHHHcCCCEEEEE
Confidence 5899999999 55544222 1 222222222 14556667778889999998864
No 27
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=45.58 E-value=51 Score=20.94 Aligned_cols=49 Identities=8% Similarity=-0.013 Sum_probs=31.3
Q ss_pred hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEeccccc
Q 046914 16 NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYE 86 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~ee 86 (90)
+.++. ..+|.++++=|++|.+.. +++ +..+.+.|..++++++.++|+-+
T Consensus 26 ~~~~~-~~~D~vi~~GDl~~~~~~-----------------~~~----~~~~~~~l~~~~~pv~~v~GNHD 74 (228)
T 1uf3_A 26 KLAPD-TGADAIALIGNLMPKAAK-----------------SRD----YAAFFRILSEAHLPTAYVPGPQD 74 (228)
T ss_dssp THHHH-HTCSEEEEESCSSCTTCC-----------------HHH----HHHHHHHHGGGCSCEEEECCTTS
T ss_pred HHHhh-cCCCEEEECCCCCCCCCC-----------------HHH----HHHHHHHHHhcCCcEEEECCCCC
Confidence 33444 379999999997664311 122 23344456677999999998654
No 28
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=45.04 E-value=26 Score=24.84 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=31.7
Q ss_pred CCCeEEEeeeCCCCCCCccccc-cCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEec
Q 046914 23 MTDITLDVHDLYGACGMNFRHT-LYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 23 ~p~~i~v~fD~fD~~~~t~R~~-~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
-|.||+|..| +...|-++ -.|....+|. =...+..+-+.|..+||+.+++=
T Consensus 20 iP~HVAiImD----GN~RwA~~~gl~~~~GH~~-----G~~~l~~iv~~c~~~GI~~lTlY 71 (249)
T 1f75_A 20 IPKHIAIIMD----GNGRWAKQKKMPRIKGHYE-----GMQTVRKITRYASDLGVKYLTLY 71 (249)
T ss_dssp SCSEEEEEEC----CHHHHHHHTTCCHHHHHHH-----HHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEec----CCcHHHHHCCCChhhhHHH-----HHHHHHHHHHHHHHcCCCEEEEE
Confidence 5899999999 55555332 1222122221 13456666777889999998864
No 29
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=44.43 E-value=16 Score=16.86 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=16.1
Q ss_pred CCCchhHHHhHHHHHHHHHH
Q 046914 54 PPTPDTIVQGLQYLKASIKA 73 (90)
Q Consensus 54 ~~~P~~L~~Ql~~i~~~l~~ 73 (90)
.|..+++..|+..|-+.+..
T Consensus 4 ~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 4 EPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 35678999999999888764
No 30
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=43.48 E-value=28 Score=24.60 Aligned_cols=51 Identities=6% Similarity=-0.035 Sum_probs=31.3
Q ss_pred CCCeEEEeeeCCCCCCCcccccc-CccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEec
Q 046914 23 MTDITLDVHDLYGACGMNFRHTL-YPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 23 ~p~~i~v~fD~fD~~~~t~R~~~-yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
-|.||+|..| +...|-++- .|....+|. =...+..+-+.|..+||+.+++=
T Consensus 15 iP~HVAiImD----GN~RwAk~~gl~~~~GH~~-----G~~~l~~iv~~c~~~GI~~lTlY 66 (245)
T 2d2r_A 15 TLKHLAIIMD----GNGRWAKLKNKARAYGHKK-----GVKTLKDITIWCANHKLECLTLY 66 (245)
T ss_dssp CCCEEEEECC----CHHHHHHTTTCCHHHHHHH-----HHHHHHHHHHHHHTTTCSEEEEE
T ss_pred CCCEEEEEec----CchHHHHHCCCChhhhHHH-----HHHHHHHHHHHHHHcCCCEEEEE
Confidence 6899999999 545443321 121111111 13456666777889999998864
No 31
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=43.46 E-value=11 Score=29.26 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=34.7
Q ss_pred CeEEEeeeCCCCCCCcc---ccccCc-cccC-----CCCCCchhHHHhHHHHHHHHHHcCCceEEeccccccc
Q 046914 25 DITLDVHDLYGACGMNF---RHTLYP-SYKN-----NRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 25 ~~i~v~fD~fD~~~~t~---R~~~yp-~YKa-----~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
.-|.++.|| -.+.| +...|. ++|. ++..+|+++ +..++++++.++|.+++-| .-+||
T Consensus 245 ~~i~i~lD~---Aasefy~~~~g~Y~l~fk~~~~~~~~~~t~~El---id~y~~lle~ypIv~IEDP-l~~dD 310 (452)
T 3otr_A 245 GKIKIAFDA---AASEFYKQDEKKYDLDYKCKTKNASKHLTGEKL---KEVYEGWLKKYPIISVEDP-FDQDD 310 (452)
T ss_dssp TTSEEEEEC---CGGGGEETTTTEEETTTTCSSCCGGGEECHHHH---HHHHHHHHHHSCEEEEECC-SCTTC
T ss_pred ceEEEcccc---chHhheeccCCeEEeeccCCCCcccccccHHHH---HHHHHHHHhhhCceEEecC-CChhh
Confidence 348899994 33333 222332 1222 122356665 7788899999999999888 45555
No 32
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=43.13 E-value=40 Score=21.04 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=28.4
Q ss_pred CCCC-CchhHHHhHHHHHHHHHHcC-CceEEeccccccccC
Q 046914 52 NRPP-TPDTIVQGLQYLKASIKAMS-IKVIEVNVMYEDAYG 90 (90)
Q Consensus 52 ~R~~-~P~~L~~Ql~~i~~~l~~lG-i~~~~~~g~eeD~~~ 90 (90)
+... ..++-...|..+.++|.... ...+.+.| ++|.-|
T Consensus 10 ~s~~~l~~~~~~~L~~ia~~l~~~p~~~~i~I~G-htD~~g 49 (138)
T 3cyp_B 10 ATSDAINQDMMLYIERIAKIIQKLPKRVHINVRG-FTDDTP 49 (138)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEE-ECCCCC
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCCcEEEEEE-ecCCCC
Confidence 3344 55666788888999998886 66788997 888754
No 33
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=42.64 E-value=49 Score=22.46 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=30.6
Q ss_pred CCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEeccccc
Q 046914 23 MTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYE 86 (90)
Q Consensus 23 ~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~ee 86 (90)
.++.++++=|++|.+. ++++..-...++.+.+.++++++.+.|+-+
T Consensus 66 ~~d~vi~~GDl~~~~~------------------~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD 111 (330)
T 3ib7_A 66 RPDAIVFTGDLADKGE------------------PAAYRKLRGLVEPFAAQLGAELVWVMGNHD 111 (330)
T ss_dssp CCSEEEECSCCBTTCC------------------HHHHHHHHHHHHHHHHHHTCEEEECCCTTS
T ss_pred CCCEEEECCCCCCCCC------------------HHHHHHHHHHHHHHHhhcCCCEEEeCCCCC
Confidence 7899999999765332 233333344455555667999999998644
No 34
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=42.53 E-value=3.2 Score=30.24 Aligned_cols=51 Identities=8% Similarity=-0.009 Sum_probs=31.9
Q ss_pred CCCeEEEeeeCCCCCCCccccc-cCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEec
Q 046914 23 MTDITLDVHDLYGACGMNFRHT-LYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 23 ~p~~i~v~fD~fD~~~~t~R~~-~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
-|.||+|..| ++..|-++ -.+....+|. =...+..+-+.|..+||..+++=
T Consensus 55 iP~HVAIIMD----GN~RwAk~rgl~r~~GH~~-----G~~~l~~iv~~c~~lGI~~LTlY 106 (284)
T 2vg3_A 55 LPNHVAIVMD----GNGRWATQRGLARTEGHKM-----GEAVVIDIACGAIELGIKWLSLY 106 (284)
T ss_dssp SCSEEEEECC----CHHHHHHHTTCCHHHHHHH-----HHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEec----CChHHHHHcCCchhHHHHH-----HHHHHHHHHHHHHHcCCCEEEEE
Confidence 6899999999 55555332 1222222221 13556666777888999998764
No 35
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=42.53 E-value=22 Score=25.30 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.5
Q ss_pred hHHHhHHHHHHHHHHcCCceEEec
Q 046914 59 TIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 59 ~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
.+-..|..++++++.+|+++++-.
T Consensus 59 g~~~GL~~l~~~~~e~Glp~~te~ 82 (267)
T 2nwr_A 59 GLEYGVKALRKVKEEFGLKITTDI 82 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred cHHHHHHHHHHHHHhcCCeEEEec
Confidence 567788889999999999998754
No 36
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=41.95 E-value=13 Score=26.77 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHHHcCCceEEec
Q 046914 60 IVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 60 L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
|...+..++++++.+||++++-.
T Consensus 74 l~~gl~~l~~~~~~~Glp~~te~ 96 (292)
T 1o60_A 74 MEEGLKIFQELKDTFGVKIITDV 96 (292)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCcEEEec
Confidence 67889999999999999999754
No 37
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=41.78 E-value=48 Score=20.66 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=24.3
Q ss_pred CCchhHHHhHHHHHHHHHHcCCceEEeccccccccC
Q 046914 55 PTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDAYG 90 (90)
Q Consensus 55 ~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~~~ 90 (90)
...++-...|..+-++|....-..+.+.| +.|.-|
T Consensus 40 ~L~~~~~~~L~~ia~~L~~~p~~~i~I~G-htD~~G 74 (134)
T 2aiz_P 40 DITGEYVQILDAHAAYLNATPAAKVLVEG-NTDERG 74 (134)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCCEEEEE-ECCSSS
T ss_pred eeCHHHHHHHHHHHHHHHHCCCceEEEEE-EECCCC
Confidence 34455566788888888877444577887 888654
No 38
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=41.46 E-value=83 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=17.4
Q ss_pred hhhhccCCCCeEEEeee-CCCCCC
Q 046914 16 NIRHDTYMTDITLDVHD-LYGACG 38 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD-~fD~~~ 38 (90)
+.+++ .+++.++++=| +||...
T Consensus 55 ~~~~~-~~~D~vliaGD~l~d~~~ 77 (336)
T 2q8u_A 55 EEAEK-REVDLILLTGDLLHSRNN 77 (336)
T ss_dssp HHHHH-HTCSEEEEESCSBSCSSC
T ss_pred HHHHH-hCCCEEEECCccccCCCC
Confidence 55666 58999999999 998653
No 39
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=41.13 E-value=19 Score=24.20 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.2
Q ss_pred chhHHHhHHHHHHHHHHcCCce
Q 046914 57 PDTIVQGLQYLKASIKAMSIKV 78 (90)
Q Consensus 57 P~~L~~Ql~~i~~~l~~lGi~~ 78 (90)
|+++...+..++++++.+||++
T Consensus 265 ~~~~~~s~~~l~~~~~~~g~~~ 286 (287)
T 2x7v_A 265 NEEHAEDIKKVFEIIEKFGIEV 286 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-
T ss_pred CcchHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999975
No 40
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=40.66 E-value=51 Score=24.56 Aligned_cols=74 Identities=14% Similarity=-0.007 Sum_probs=44.9
Q ss_pred CcchHHHHHHHHhh-hhhhccCCCCeEEEe-eeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceE
Q 046914 2 GESYGLLWRGFLSY-NIRHDTYMTDITLDV-HDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVI 79 (90)
Q Consensus 2 G~pt~ai~~gf~~~-~l~~~~~~p~~i~v~-fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~ 79 (90)
|.|....- -|..+ +.+.+ ..|+|+.+- +-. .++....+... +....+.+++....+..+.+.|.+.|...+
T Consensus 213 GlPget~e-~~~~tl~~~~~-l~~~~i~~y~l~~--~p~t~~~~~~~---~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~y 285 (457)
T 1olt_A 213 GLPKQTPE-SFAFTLKRVAE-LNPDRLSVFNYAH--LPTIFAAQRKI---KDADLPSPQQKLDILQETIAFLTQSGYQFI 285 (457)
T ss_dssp SCTTCCHH-HHHHHHHHHHH-HCCSEEEEEECCC--CTTTSGGGGGS---CGGGSCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCHH-HHHHHHHHHHh-cCcCEEEeecCcC--CcCchhHhhcc---ccCCCcCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 44555555 56666 66666 588887643 220 12211111111 122345667888899999999999999998
Q ss_pred Eec
Q 046914 80 EVN 82 (90)
Q Consensus 80 ~~~ 82 (90)
++.
T Consensus 286 eis 288 (457)
T 1olt_A 286 GMD 288 (457)
T ss_dssp ETT
T ss_pred Eec
Confidence 875
No 41
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=40.43 E-value=23 Score=22.73 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=33.2
Q ss_pred CccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEe
Q 046914 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81 (90)
Q Consensus 39 ~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~ 81 (90)
-.|..-=--.||..|+.+|..-...-+.+-+.+..+||..+++
T Consensus 40 ~~~~SaG~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V 82 (129)
T 2vqe_K 40 ITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDV 82 (129)
T ss_dssp EEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEeccceeEcCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3666655568999999999877666677777888899987765
No 42
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=39.73 E-value=47 Score=20.33 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=27.0
Q ss_pred cCCCCCCchhHHHhHHHHHHHHHHcCCceEEeccccccccC
Q 046914 50 KNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDAYG 90 (90)
Q Consensus 50 Ka~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~~~ 90 (90)
..+.....++-...|..+.++|....-..+.+.| +.|.-|
T Consensus 29 ~~~s~~l~~~~~~~L~~ia~~l~~~~~~~i~I~G-htD~~G 68 (129)
T 2kgw_A 29 GNDGASLIPADYEILNRVADKLKACPDARVTING-YTDNTG 68 (129)
T ss_dssp CTTSSCCCHHHHHHHHHHHHHHHTCTTSCEEEEE-CCCTTS
T ss_pred CCCCcccCHHHHHHHHHHHHHHHhCCCceEEEEE-EeCCCC
Confidence 3344445566667788888888876544578887 888654
No 43
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=38.53 E-value=43 Score=23.90 Aligned_cols=52 Identities=4% Similarity=-0.101 Sum_probs=32.4
Q ss_pred CCCCeEEEeeeCCCCCCCcccc-ccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEec
Q 046914 22 YMTDITLDVHDLYGACGMNFRH-TLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 22 ~~p~~i~v~fD~fD~~~~t~R~-~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
.-|.||+|..| +...|-+ .-.|-...||.. ..-+..+-+.|..+||.++++=
T Consensus 16 ~iP~HVAiIMD----GNrRwAk~rgl~r~~GH~~G-----~~~l~~i~~~c~~lGI~~lTlY 68 (253)
T 3sgv_B 16 HGCRHVAIIMD----GNGRWAKKQGKIRAFGHKAG-----AKSVRRAVSFAANNGIEALTLY 68 (253)
T ss_dssp TCCSEEEEEEC----CHHHHHHHTTCCHHHHHHHH-----HHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCEEEEEec----CcHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHHcCCCEEEEE
Confidence 37899999999 5555533 323333333321 3345556667788999998763
No 44
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=37.93 E-value=29 Score=23.45 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCCCCchhHHHhHHHHHHHHHHcCCceEEecccc
Q 046914 51 NNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMY 85 (90)
Q Consensus 51 a~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~e 85 (90)
.||+|+++|+..-.+++.+.++.+...++..=|.+
T Consensus 105 ~nr~P~~~Ei~~C~~~L~~ei~~~~P~vIv~lG~~ 139 (204)
T 1vk2_A 105 NNRTPTPEEQAACGHFLLAQIEIINPDVIVALGAT 139 (204)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHHHHCCSEEEEESHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCccEEEeecHH
Confidence 58999999999999999999999988887766544
No 45
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=36.39 E-value=27 Score=22.00 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=29.4
Q ss_pred ccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEe
Q 046914 40 NFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81 (90)
Q Consensus 40 t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~ 81 (90)
.|..-=--.+|..|+.+|..-...-+.+-+.+..+||..+++
T Consensus 31 ~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v 72 (117)
T 3r8n_K 31 GWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEV 72 (117)
T ss_dssp EEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEE
T ss_pred EEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 444433347999999999766555556666777899988765
No 46
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=36.19 E-value=9.1 Score=22.00 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=23.5
Q ss_pred chhHHHhHHHHHHHHHHcCCceEEecc
Q 046914 57 PDTIVQGLQYLKASIKAMSIKVIEVNV 83 (90)
Q Consensus 57 P~~L~~Ql~~i~~~l~~lGi~~~~~~g 83 (90)
=-+|..+.|...++|...|+.++.-++
T Consensus 11 I~eiv~~~P~~~~vf~~~G~~c~~C~~ 37 (73)
T 2k5e_A 11 FAQALQTHPGVAGVLRSYNLGCIGCMG 37 (73)
T ss_dssp HHHHHHHCTHHHHHHHHTTGGGGGTTT
T ss_pred HHHHHHHCHHHHHHHHHcCCCCCCCCc
Confidence 468999999999999999998776665
No 47
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.78 E-value=2.4 Score=24.10 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=14.0
Q ss_pred CCccccccCccccCCC
Q 046914 38 GMNFRHTLYPSYKNNR 53 (90)
Q Consensus 38 ~~t~R~~~yp~YKa~R 53 (90)
...+|+++|..|+.+|
T Consensus 44 ~~~eRK~~Fe~Y~~~r 59 (59)
T 2b7e_A 44 DPLWKKEMFEKYLSNR 59 (59)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4788999999999887
No 48
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=35.16 E-value=50 Score=20.60 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=28.6
Q ss_pred ccCCCCCCchhHHHhHHHHHHHHHHc--CCceEEeccccccccC
Q 046914 49 YKNNRPPTPDTIVQGLQYLKASIKAM--SIKVIEVNVMYEDAYG 90 (90)
Q Consensus 49 YKa~R~~~P~~L~~Ql~~i~~~l~~l--Gi~~~~~~g~eeD~~~ 90 (90)
+..+.....++-..+|..+-+.|... ....+.+.| +.|.-|
T Consensus 26 F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~~~i~I~G-htD~~G 68 (148)
T 4erh_A 26 FNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLG-FTDRIG 68 (148)
T ss_dssp BCTTCCSBCHHHHHHHHHHHHHHTCCCTTTCEEEEEE-ECCTTC
T ss_pred ecCCccccCHHHHHHHHHHHHHHHhcCCCCcEEEEEE-ECCCCC
Confidence 33444445566677788888888877 456788997 888755
No 49
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=34.29 E-value=45 Score=21.68 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=27.3
Q ss_pred CCCCCchhHHHhHHHHHHHHHHcCCceEEeccccccccC
Q 046914 52 NRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDAYG 90 (90)
Q Consensus 52 ~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~~~ 90 (90)
+.....++-...|..|-++|.......+.+.| +.|.-|
T Consensus 22 ~sa~L~~~~~~~L~~la~~L~~~~~~~I~I~G-hTD~~G 59 (164)
T 1r1m_A 22 DKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEG-HTDFMG 59 (164)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEE-ECCSSS
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCCcEEEEEE-EeCCCC
Confidence 33345556667788888888887666788997 888754
No 50
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=34.06 E-value=44 Score=23.85 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=32.0
Q ss_pred CCCCeEEEeeeCCCCCCCccccc-cCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEec
Q 046914 22 YMTDITLDVHDLYGACGMNFRHT-LYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 22 ~~p~~i~v~fD~fD~~~~t~R~~-~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
.-|.||+|..| +...|-++ -.|-...||. =...+..+-+.|..+||.++++=
T Consensus 23 ~iP~HVAiIMD----GN~RwAk~rgl~r~~GH~~-----G~~~~~~iv~~c~~lGI~~lTlY 75 (256)
T 4h8e_A 23 NIPEHIAIIMD----GNGRWAKKRKMPRIKGHYE-----GMQTIKKITRIASDIGVKYLTLY 75 (256)
T ss_dssp CCCSEEEEECC----CHHHHHHHTTCCHHHHHHH-----HHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCEEEEEcC----CCHHHHHHCCCCHHHHHHH-----HHHHHHHHHHHHHHcCCCEEEEE
Confidence 46999999999 55555332 2233333332 13345556667788999998753
No 51
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=33.79 E-value=72 Score=20.03 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=29.0
Q ss_pred ccCCCCCCchhHHHhHHHHHHHHHHcCCceEEeccccccccC
Q 046914 49 YKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDAYG 90 (90)
Q Consensus 49 YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~~~ 90 (90)
+..+.....++-...|..+-++|....-..+.+.| +.|.-|
T Consensus 38 F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~i~I~G-htD~~G 78 (149)
T 2k1s_A 38 FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIG-YTDSTG 78 (149)
T ss_dssp BSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEE-ECCCTT
T ss_pred eCCCCccCCHHHHHHHHHHHHHHHhCCCceEEEEE-EcCCCC
Confidence 44444555666677788888888877655688887 888754
No 52
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=33.37 E-value=25 Score=22.09 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=18.8
Q ss_pred hHHHhHHHHHHHHHHcC-CceEEecc
Q 046914 59 TIVQGLQYLKASIKAMS-IKVIEVNV 83 (90)
Q Consensus 59 ~L~~Ql~~i~~~l~~lG-i~~~~~~g 83 (90)
+...|...+.++++.|| ||.+..++
T Consensus 80 e~~AQq~~lstLid~LGyvPkV~~d~ 105 (107)
T 2q0o_C 80 RSEAQQEELSDILDALGFVPDVPFDD 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHCSCCCCC---
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 56789999999999999 67776665
No 53
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=31.89 E-value=1.3e+02 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.6
Q ss_pred hhhhccCCCCeEEEeeeCCCCC
Q 046914 16 NIRHDTYMTDITLDVHDLYGAC 37 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD~fD~~ 37 (90)
+..+. .+++.++++=|+||..
T Consensus 34 ~~~~~-~~~D~vl~~GDl~d~~ 54 (333)
T 1ii7_A 34 EIAVQ-ENVDFILIAGDLFHSS 54 (333)
T ss_dssp HHHHH-TTCSEEEEESCSBSSS
T ss_pred HHHHh-cCCCEEEECCCcCCCC
Confidence 45556 5899999999988854
No 54
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=30.93 E-value=38 Score=22.91 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCCCCCchhHHHhHH-HHHHHHHHcCCceEEecccc
Q 046914 51 NNRPPTPDTIVQGLQ-YLKASIKAMSIKVIEVNVMY 85 (90)
Q Consensus 51 a~R~~~P~~L~~Ql~-~i~~~l~~lGi~~~~~~g~e 85 (90)
.||+|+++|+..-.+ ++.+.|+.+...++..=|.+
T Consensus 88 ~nr~P~~~Ei~~C~~~~L~~ei~~l~P~vIv~lG~~ 123 (205)
T 1ui0_A 88 QNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAV 123 (205)
T ss_dssp GGCCCCHHHHHHHHHHTHHHHHHHHCCSEEEEBSHH
T ss_pred CCCCcCHHHHHHhHHHHHHHHHHhCCccEEEeehHH
Confidence 489999999999999 99999999998887766644
No 55
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=30.60 E-value=41 Score=18.12 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=15.1
Q ss_pred CchhHHHhHHHHHHHHHH
Q 046914 56 TPDTIVQGLQYLKASIKA 73 (90)
Q Consensus 56 ~P~~L~~Ql~~i~~~l~~ 73 (90)
+.+.|.+|+-.|+.++..
T Consensus 2 ~~dPL~EQ~~~I~~~I~q 19 (48)
T 3v1a_A 2 SGSPLAQQIKNIHSFIHQ 19 (48)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 357899999999999865
No 56
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=30.56 E-value=42 Score=18.29 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=14.5
Q ss_pred CCchhHHHhHHHHHHHHHH
Q 046914 55 PTPDTIVQGLQYLKASIKA 73 (90)
Q Consensus 55 ~~P~~L~~Ql~~i~~~l~~ 73 (90)
|..+.|.+|+..|+..+..
T Consensus 2 ~~~dPL~EQ~~~I~~~I~q 20 (51)
T 1yzm_A 2 PLGSPLLQQIHNITSFIRQ 20 (51)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 3457899999999988864
No 57
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=30.48 E-value=16 Score=21.06 Aligned_cols=31 Identities=3% Similarity=-0.083 Sum_probs=24.5
Q ss_pred CCCCCchhHHHhHHHHHHHHHHcCCceEEec
Q 046914 52 NRPPTPDTIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 52 ~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
++.-+-.++..+.|...++|...|+.|+.-+
T Consensus 4 t~d~tI~eIv~~~P~~~~vf~~~G~~C~gC~ 34 (76)
T 2k53_A 4 TKDMIIADVLQMDRGTAPIFINNGMHCLGCP 34 (76)
T ss_dssp CTTSBHHHHHHHCGGGHHHHHHTTCCCCSSC
T ss_pred CCCCCHHHHHHHCHHHHHHHHHcCCCCCCCC
Confidence 3333457899999999999999999985544
No 58
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=30.11 E-value=1.5e+02 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.2
Q ss_pred hhhhccCCCCeEEEeeeCC-CC
Q 046914 16 NIRHDTYMTDITLDVHDLY-GA 36 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD~f-D~ 36 (90)
++++. .+|+.++++=|+| |.
T Consensus 37 ~~~~~-~~~D~vliaGDl~hd~ 57 (379)
T 3tho_B 37 EEAEK-REVDLILLTGDLLHSR 57 (379)
T ss_dssp HHHHH-HTCSEEEECSCCBSCS
T ss_pred HHHHh-cCCCEEEECCCccccC
Confidence 56666 5999999999988 64
No 59
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=29.82 E-value=65 Score=20.85 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=29.5
Q ss_pred ccccccCccccCCC-CCCchhHHHhHHHHHHHHHHcCCceEEe
Q 046914 40 NFRHTLYPSYKNNR-PPTPDTIVQGLQYLKASIKAMSIKVIEV 81 (90)
Q Consensus 40 t~R~~~yp~YKa~R-~~~P~~L~~Ql~~i~~~l~~lGi~~~~~ 81 (90)
.|+.-=--.+|+.| +.+|-.-...-+.+-+.+..+||..+++
T Consensus 39 ~~~ssG~~gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V 81 (137)
T 3u5c_O 39 IARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHV 81 (137)
T ss_dssp CCCCBTTTTSCCSTTTTCHHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred EEEeCCCcEEeCCcccCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 56655555899999 6888665444455666677789988765
No 60
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=29.35 E-value=7 Score=22.79 Aligned_cols=26 Identities=8% Similarity=0.049 Sum_probs=21.9
Q ss_pred chhHHHhHHHHHHHHHHcCCceEEec
Q 046914 57 PDTIVQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 57 P~~L~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
=-+|..+.|.+.++|..+|+.++.-|
T Consensus 15 I~elv~~~P~~~~vl~~~G~~~l~~p 40 (81)
T 2fi0_A 15 VAEVVDKHPEVLEILVELGFKPLANP 40 (81)
T ss_dssp HHHHHHHCGGGHHHHTTTTCGGGGSH
T ss_pred HHHHHHHCHHHHHHHHHcCCccccCc
Confidence 36899999999999999999887443
No 61
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=28.84 E-value=78 Score=20.75 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=24.9
Q ss_pred cccCccc-cCCCCC----CchhHHHhH-HHHHHHHHHcCCce
Q 046914 43 HTLYPSY-KNNRPP----TPDTIVQGL-QYLKASIKAMSIKV 78 (90)
Q Consensus 43 ~~~yp~Y-Ka~R~~----~P~~L~~Ql-~~i~~~l~~lGi~~ 78 (90)
-.+|.+. |.+|+. +|++....| +.+-+.|+..|+++
T Consensus 79 FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~~~~V 120 (145)
T 1jke_A 79 FTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNT 120 (145)
T ss_dssp GGGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 3688999 556653 566665554 88888888888763
No 62
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=28.64 E-value=93 Score=20.32 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=29.6
Q ss_pred CCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEeccccc
Q 046914 23 MTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYE 86 (90)
Q Consensus 23 ~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~ee 86 (90)
.++.++++=|.+|.+. + .++..+.++|+.++++++.+.|+-+
T Consensus 41 ~~d~vi~~GDl~~~~~------------------~----~~~~~~~~~l~~l~~p~~~v~GNHD 82 (274)
T 3d03_A 41 RPDAVVVSGDIVNCGR------------------P----EEYQVARQILGSLNYPLYLIPGNHD 82 (274)
T ss_dssp CCSEEEEESCCBSSCC------------------H----HHHHHHHHHHTTCSSCEEEECCTTS
T ss_pred CCCEEEECCCCCCCCC------------------H----HHHHHHHHHHHhcCCCEEEECCCCC
Confidence 5799999999654321 1 1234567788888999999998643
No 63
>4did_B Inositol phosphate phosphatase SOPB; small GTPase, GTP binding, hydrolase-hydrolase complex; HET: GDP; 2.35A {Salmonella enterica subsp}
Probab=28.12 E-value=44 Score=22.11 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=21.0
Q ss_pred ccccCccccCCCCCCchhHHHhHHHHHHHH
Q 046914 42 RHTLYPSYKNNRPPTPDTIVQGLQYLKASI 71 (90)
Q Consensus 42 R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l 71 (90)
++-.-...|++|+.+|.++...-...++++
T Consensus 74 nql~~ak~k~dR~AT~qE~~~aK~L~knLI 103 (152)
T 4did_B 74 NQMELAKVKADRPATKQEEAAAKALKKNLI 103 (152)
T ss_dssp HHHHHGGGSCCCBCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcCchHHHHHHHHHHHHHH
Confidence 444456789999999999976655544443
No 64
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=26.73 E-value=85 Score=22.40 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=38.0
Q ss_pred CCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHH-HcCCceEEecc
Q 046914 23 MTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIK-AMSIKVIEVNV 83 (90)
Q Consensus 23 ~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~-~lGi~~~~~~g 83 (90)
+.+++++.= ..+++........+ +++...+.-.+|+..+.++|+ ..|+.+...+.
T Consensus 35 ~~~~aivr~-----p~~s~~~~~~~~~~-~~~~d~~~A~~q~~~l~~~Lr~~~Gv~V~~l~~ 90 (308)
T 3i4a_A 35 RATHAVVRA-----LPESLGQHALRSAK-GEEVDVARAERQHQLYVGVLGSKLGLQVVELPA 90 (308)
T ss_dssp CCSEEEEEC-----CCTTHHHHSCCSSC-CCCCCHHHHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred ceeEEEEeC-----CCHHHhcccccccc-CCCCCHHHHHHHHHHHHHHHhhcCCCEEEEcCC
Confidence 446666442 34566654222222 455566778999999999999 99999999875
No 65
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=25.60 E-value=10 Score=27.03 Aligned_cols=50 Identities=4% Similarity=-0.063 Sum_probs=31.0
Q ss_pred CeEEEeeeCCCCCCCcccccc-CccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEecc
Q 046914 25 DITLDVHDLYGACGMNFRHTL-YPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNV 83 (90)
Q Consensus 25 ~~i~v~fD~fD~~~~t~R~~~-yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g 83 (90)
.||+|..| +...|-++. .|....+|. =...+..+-+.|..+||+.+++=.
T Consensus 19 ~HVAiImD----GN~RwAk~~gl~r~~GH~~-----G~~~l~~iv~~c~~~GI~~lTlYa 69 (253)
T 3qas_B 19 RHVAIIMD----GNGRWAKKQGKIRAFGHKA-----GAKSVRRAVSFAANNGIEALTLYA 69 (253)
T ss_dssp SEEEEECC----CHHHHHHHTTCCHHHHHHH-----HHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEEec----CCHHHHHHcCCChhhhHHH-----HHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99999999 555553321 222222221 135566677778899999998643
No 66
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=25.45 E-value=1.2e+02 Score=19.85 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=31.2
Q ss_pred ccCCCCCC-chhHHHhHHHHHHHHHHcCC-ceEEeccccccccC
Q 046914 49 YKNNRPPT-PDTIVQGLQYLKASIKAMSI-KVIEVNVMYEDAYG 90 (90)
Q Consensus 49 YKa~R~~~-P~~L~~Ql~~i~~~l~~lGi-~~~~~~g~eeD~~~ 90 (90)
+..+.... +++-...|..|.++|....- ..+.+.| +.|.-|
T Consensus 62 F~~~sa~L~~~~~~~~L~~ia~~l~~~~~~~~i~I~G-hTD~~g 104 (193)
T 3s0y_A 62 FENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRG-FTDDTP 104 (193)
T ss_dssp BSSTTCCCBCGGGHHHHHHHHHHHHTSCTTCEEEEEE-CCCSCC
T ss_pred eCCCCcccCCHHHHHHHHHHHHHHHhCCCceEEEEEE-EeCCCC
Confidence 55666666 57778889999999998753 3688997 888765
No 67
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=25.25 E-value=53 Score=18.41 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHcCCceEEec
Q 046914 61 VQGLQYLKASIKAMSIKVIEVN 82 (90)
Q Consensus 61 ~~Ql~~i~~~l~~lGi~~~~~~ 82 (90)
..|+..+-+.|+.+||.++.-+
T Consensus 42 ~e~id~i~~~L~~~gI~Vvd~~ 63 (72)
T 2k6x_A 42 TNLIERIHEELEKHGINIVENE 63 (72)
T ss_dssp HHHHHHHHHHHHHTCCCCBCCS
T ss_pred HHHHHHHHHHHHHCCCccccCC
Confidence 4689999999999999987543
No 68
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.66 E-value=24 Score=21.69 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=22.8
Q ss_pred chhHHHhHHHHHHHHHHcCCceEEecc
Q 046914 57 PDTIVQGLQYLKASIKAMSIKVIEVNV 83 (90)
Q Consensus 57 P~~L~~Ql~~i~~~l~~lGi~~~~~~g 83 (90)
-+.+...++.+++.++..|+|+..++.
T Consensus 60 gPQV~y~~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 60 APQVRSYYREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp CGGGGGGHHHHHHHHTTTTCEEEECCH
T ss_pred ChHHHHHHHHHHHHhhhcCCcEEEeCH
Confidence 466778899999999999999988774
No 69
>1jmx_G Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.137.9.1 PDB: 1jmz_G*
Probab=23.28 E-value=11 Score=22.47 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=9.0
Q ss_pred CCceEEeccccccccC
Q 046914 75 SIKVIEVNVMYEDAYG 90 (90)
Q Consensus 75 Gi~~~~~~g~eeD~~~ 90 (90)
|+..+-.| +|+|.||
T Consensus 22 gvasLCQP-mEaDLYg 36 (79)
T 1jmx_G 22 GVSSLCQP-MEADLYG 36 (79)
T ss_dssp SSSSSCSS-GGGGHHH
T ss_pred cHhhccCc-chhhhhc
Confidence 35555555 5777775
No 70
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=23.17 E-value=1.1e+02 Score=19.49 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.7
Q ss_pred ccCCCCCC-chhHHHhHHHHHHHHHHcC-CceEEeccccccccC
Q 046914 49 YKNNRPPT-PDTIVQGLQYLKASIKAMS-IKVIEVNVMYEDAYG 90 (90)
Q Consensus 49 YKa~R~~~-P~~L~~Ql~~i~~~l~~lG-i~~~~~~g~eeD~~~ 90 (90)
+..+.... +++-...|..|.++|.... -..+.+.| +.|.-|
T Consensus 35 F~~~s~~l~~~~~~~~L~~ia~~l~~~~~~~~i~I~G-hTD~~g 77 (166)
T 3s06_A 35 FENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRG-FTDDTP 77 (166)
T ss_dssp BSCSSSCCBCGGGHHHHHHHHHHGGGSCTTCEEEEEE-EEESCC
T ss_pred ccCCCceeCCHHHHHHHHHHHHHHHhCCCCceEEEEE-eeCCCC
Confidence 44445555 5777788888999998875 33688997 888765
No 71
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=22.99 E-value=1.4e+02 Score=19.36 Aligned_cols=59 Identities=7% Similarity=-0.057 Sum_probs=34.9
Q ss_pred EEEeeeCCCCCCCcccc--ccCcc---ccCCC----CCCchhHHHhHHHHHHHHHHcCCceEEeccccc
Q 046914 27 TLDVHDLYGACGMNFRH--TLYPS---YKNNR----PPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYE 86 (90)
Q Consensus 27 i~v~fD~fD~~~~t~R~--~~yp~---YKa~R----~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~ee 86 (90)
+-++.|=|.++..++.. ++-|+ -|..+ .-..+....-+..+.++++.+|+.++ ++|+|.
T Consensus 142 ~~ialDDfG~g~ssl~~L~~l~~~~~ki~~~~~~~~~~~~~~~~~~~~~i~~~a~~lg~~vi-aeGVEt 209 (235)
T 3kzp_A 142 YHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFV-VEGIET 209 (235)
T ss_dssp CEEEECSTTSTTCCHHHHHHHGGGCSEEEEEGGGGTTSCHHHHHHHHHHHHHHHHHTTCEEE-EEEECS
T ss_pred CEEEEEeCCCCchhHHHHHhccCcceEEeccHHHhhcCCcHHHHHHHHHHHHHHHHcCCEEE-EEEecC
Confidence 66777855566566542 12112 22222 11234445667888888999999977 777664
No 72
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=22.96 E-value=58 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=21.5
Q ss_pred CCCCCchhHHHhHHHHHHHHHHcCCce
Q 046914 52 NRPPTPDTIVQGLQYLKASIKAMSIKV 78 (90)
Q Consensus 52 ~R~~~P~~L~~Ql~~i~~~l~~lGi~~ 78 (90)
+|+++.|++..++ +.++|+.|||..
T Consensus 170 a~p~~iediv~~v--v~r~ld~lgi~~ 194 (209)
T 3zqu_A 170 HQPQSVEDLVDFV--VARILNTLGIPQ 194 (209)
T ss_dssp TCCCSHHHHHHHH--HHHHHHHHTCCC
T ss_pred cCCCCHHHHHHHH--HHHHHHhCCCCC
Confidence 3788889998887 889999999974
No 73
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=22.81 E-value=1.6e+02 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.0
Q ss_pred hhhhccCCCCeEEEeeeCCCCCCC
Q 046914 16 NIRHDTYMTDITLDVHDLYGACGM 39 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD~fD~~~~ 39 (90)
..+.. ..|+.++++=|+||....
T Consensus 46 ~~~~~-~~~D~VliaGDLfd~~~p 68 (417)
T 4fbw_A 46 EIARE-RDVDMILLGGDIFHDNKP 68 (417)
T ss_dssp HHHHH-TTCSEEEECSCCBSSSSC
T ss_pred HHHHh-cCCCEEEEcCccccCCCC
Confidence 56666 599999999998886543
No 74
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=22.61 E-value=50 Score=25.38 Aligned_cols=30 Identities=23% Similarity=0.118 Sum_probs=22.9
Q ss_pred CCchhHHHhHHHHHHHHHHcCCceEEeccccccc
Q 046914 55 PTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDA 88 (90)
Q Consensus 55 ~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~ 88 (90)
.+|+++ +..++++++.++|.+++-|= -+||
T Consensus 279 ~t~~el---id~y~~lle~ypI~~IEDPl-~~dD 308 (441)
T 3qtp_A 279 KDVDGL---IAEYVDYGKHYPIASIEDPF-AEDD 308 (441)
T ss_dssp ECHHHH---HHHHHHHHHHSCEEEEESCS-CTTC
T ss_pred cCHHHH---HHHHHHHhhhcceeeecCCC-ChHH
Confidence 356655 77889999999999998884 5554
No 75
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=22.43 E-value=9.7 Score=24.09 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=27.1
Q ss_pred CccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEE
Q 046914 39 MNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIE 80 (90)
Q Consensus 39 ~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~ 80 (90)
...|.++||+ -+||++...+.....+|+.+-..-+.
T Consensus 33 e~L~~~lypd------vt~eef~~~~~K~~~lik~i~~admd 68 (108)
T 2h2m_A 33 ELLRSQLYPE------VPPEEFRPFLAKMRGILKSIASADMD 68 (108)
T ss_dssp HHHHHHHCSS------SCSSTHHHHHTTTSTTHHHHTTTCCC
T ss_pred HHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6789999999 67888888888777777765444333
No 76
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=22.31 E-value=72 Score=19.77 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=17.8
Q ss_pred CCchhHHHhHHHHHHHHHHcCCceEE
Q 046914 55 PTPDTIVQGLQYLKASIKAMSIKVIE 80 (90)
Q Consensus 55 ~~P~~L~~Ql~~i~~~l~~lGi~~~~ 80 (90)
..|+++ +..|+++|+++||.+-.
T Consensus 37 ~~P~eI---m~eI~rvL~~~gi~~~~ 59 (120)
T 3ose_A 37 MDPNDM---MREIRKVLDANNCDYEQ 59 (120)
T ss_dssp SCHHHH---HHHHHHHHHHTTCEEEE
T ss_pred CCHHHH---HHHHHHHHHHCCCEEEE
Confidence 357888 56688999999997654
No 77
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=22.24 E-value=87 Score=19.09 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=31.3
Q ss_pred hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEe
Q 046914 16 NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~ 81 (90)
+.+.. .+|+.+++.+-.-|. ++ ...++++..++..+-+.+.+.|..++-+
T Consensus 60 ~~~~~-~~pd~vvi~~G~ND~----~~-----------~~~~~~~~~~~~~~i~~~~~~~~~vvl~ 109 (185)
T 3hp4_A 60 ALLEQ-YEPTHVLIELGANDG----LR-----------GFPVKKMQTNLTALVKKSQAANAMTALM 109 (185)
T ss_dssp HHHHH-HCCSEEEEECCHHHH----HT-----------TCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhh-cCCCEEEEEeecccC----CC-----------CcCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45555 488888877652111 11 2346778888888877777777666543
No 78
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=22.12 E-value=84 Score=18.11 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCCchhHHHhHHHHHHHHHH
Q 046914 54 PPTPDTIVQGLQYLKASIKA 73 (90)
Q Consensus 54 ~~~P~~L~~Ql~~i~~~l~~ 73 (90)
....+.|.+|+..|+..+..
T Consensus 19 ~~~~dPL~EQ~~~I~~yI~q 38 (69)
T 1z0k_B 19 SEDSDPLLQQIHNITSFIRQ 38 (69)
T ss_dssp CCCSSHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHH
Confidence 45678999999999998864
No 79
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=21.92 E-value=59 Score=19.89 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=19.0
Q ss_pred chhHHHhHHHHHHHHHHcCCceEEecc
Q 046914 57 PDTIVQGLQYLKASIKAMSIKVIEVNV 83 (90)
Q Consensus 57 P~~L~~Ql~~i~~~l~~lGi~~~~~~g 83 (90)
|+.+..++ ++.+|++-||+++..+.
T Consensus 30 ~d~v~a~~--~k~LLe~aGI~~fv~De 54 (97)
T 2hfv_A 30 NDAVLLSA--VGALLDGADIGHLVLDQ 54 (97)
T ss_dssp CCHHHHHH--HHHHHHHTTCCEECCSC
T ss_pred CCHHHHHH--HHHHHHhCCCCEEEcCC
Confidence 55555555 99999999999986653
No 80
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=21.69 E-value=55 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCCceEEecccccc
Q 046914 63 GLQYLKASIKAMSIKVIEVNVMYED 87 (90)
Q Consensus 63 Ql~~i~~~l~~lGi~~~~~~g~eeD 87 (90)
..+.+++.++..|||++.+++-+.|
T Consensus 331 ~~~~~~~~~~~~giP~l~ie~D~~~ 355 (385)
T 3o3m_B 331 DYPLVRKDIEDSGIPTLYVEIDQQT 355 (385)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECTTC
T ss_pred hHHHHHHHHHHCCCCEEEEEecCCC
Confidence 3456788889999999999876654
No 81
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=21.61 E-value=1.1e+02 Score=19.24 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=19.1
Q ss_pred hHHHhHHHHHHHHHHcCCceE
Q 046914 59 TIVQGLQYLKASIKAMSIKVI 79 (90)
Q Consensus 59 ~L~~Ql~~i~~~l~~lGi~~~ 79 (90)
.|..|...+++.+...|+.+.
T Consensus 23 sl~~Q~~~l~~~a~~~g~~i~ 43 (167)
T 3guv_A 23 SLEAQKSRMKAFAIYNDYEIV 43 (167)
T ss_dssp GHHHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEE
Confidence 799999999999999998764
No 82
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=21.47 E-value=1.2e+02 Score=19.90 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=24.1
Q ss_pred cccCccc-cCCCCC----CchhHHHhH-HHHHHHHHHcCCce
Q 046914 43 HTLYPSY-KNNRPP----TPDTIVQGL-QYLKASIKAMSIKV 78 (90)
Q Consensus 43 ~~~yp~Y-Ka~R~~----~P~~L~~Ql-~~i~~~l~~lGi~~ 78 (90)
-.+|.+. |.+|+. +|++....| +.+-+.|+..|+++
T Consensus 79 FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~g~~V 120 (148)
T 2dbo_A 79 FTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESGLKV 120 (148)
T ss_dssp GGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHTTCSCE
T ss_pred eecccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 3678888 455553 566665554 78888888888753
No 83
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=21.29 E-value=1.2e+02 Score=19.31 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=16.1
Q ss_pred HHHhh-hhhhccCCCCeEEEeee
Q 046914 11 GFLSY-NIRHDTYMTDITLDVHD 32 (90)
Q Consensus 11 gf~~~-~l~~~~~~p~~i~v~fD 32 (90)
||+.. ..-.+..+-+|+++||+
T Consensus 62 ~fv~LLEfAEe~L~~~~V~v~f~ 84 (126)
T 1zo0_A 62 SFAALLEFAEEQLRADHVFICFP 84 (126)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEe
Confidence 66666 55555357899999999
No 84
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=20.62 E-value=1.6e+02 Score=19.24 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=34.0
Q ss_pred cccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEeccccccccC
Q 046914 43 HTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYEDAYG 90 (90)
Q Consensus 43 ~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~eeD~~~ 90 (90)
|..=|.|..+....++.|..-+..+-++....|+.++..|..-...||
T Consensus 80 H~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g 127 (184)
T 1spv_A 80 HTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYG 127 (184)
T ss_dssp EECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTC
T ss_pred EEcCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCC
Confidence 333466655443446778888888888889999999999876555554
No 85
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.55 E-value=1.1e+02 Score=19.69 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=25.3
Q ss_pred ccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEe
Q 046914 47 PSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEV 81 (90)
Q Consensus 47 p~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~ 81 (90)
-.+|..|+.+|-.-...-+.+-+.+..+||..+.+
T Consensus 47 ~gfkg~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V 81 (137)
T 3j20_M 47 VVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHI 81 (137)
T ss_dssp TCSCTTTSSSHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred eeecCCccCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46888888898765554556666677889988765
No 86
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=20.52 E-value=96 Score=20.68 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=23.1
Q ss_pred CchhHHHhHH--HHHHHHHHcCCceEEecc
Q 046914 56 TPDTIVQGLQ--YLKASIKAMSIKVIEVNV 83 (90)
Q Consensus 56 ~P~~L~~Ql~--~i~~~l~~lGi~~~~~~g 83 (90)
-|....-||| .|+.++..-||+++.++.
T Consensus 65 ~~~~i~~hi~~~li~alC~E~~Ip~i~V~s 94 (165)
T 2kg4_A 65 DDRDVALQIHFTLIQAFCCENDINILRVSN 94 (165)
T ss_dssp GGGCHHHHHHHHHHHHHHHHTTCCEEEESC
T ss_pred ccchhhhhccHHHHHHHHHHcCCCEEEECC
Confidence 3566677777 799999999999998875
No 87
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=20.45 E-value=1.6e+02 Score=19.43 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=34.2
Q ss_pred hhhhccCCCCeEEEeeeCCCCCCCccccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCceEEeccccc
Q 046914 16 NIRHDTYMTDITLDVHDLYGACGMNFRHTLYPSYKNNRPPTPDTIVQGLQYLKASIKAMSIKVIEVNVMYE 86 (90)
Q Consensus 16 ~l~~~~~~p~~i~v~fD~fD~~~~t~R~~~yp~YKa~R~~~P~~L~~Ql~~i~~~l~~lGi~~~~~~g~ee 86 (90)
+.++. ..|+.++++=|++|.+... . .. -..++..+.+.|+.++++++.+.|.-+
T Consensus 45 ~~~~~-~~~d~vi~~GD~~~~~~~~---~---------~~----~~~~~~~~~~~l~~~~~p~~~v~GNHD 98 (322)
T 2nxf_A 45 LQWRR-ERVQCVVQLGDIIDGHNRR---R---------DA----SDRALDTVMAELDACSVDVHHVWGNHE 98 (322)
T ss_dssp HHHHH-TTCSEEEECSCCBCTHHHH---T---------TC----HHHHHHHHHHHHHTTCSEEEECCCHHH
T ss_pred HHHHh-cCCCEEEECCCccCCCCCc---c---------hH----HHHHHHHHHHHHHhcCCcEEEecCCCC
Confidence 33444 4899999999965532110 0 01 133456677788889999999998543
No 88
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=20.35 E-value=64 Score=22.30 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=23.4
Q ss_pred CchhHHHhHHHHHHHHHHcCCceEEecc
Q 046914 56 TPDTIVQGLQYLKASIKAMSIKVIEVNV 83 (90)
Q Consensus 56 ~P~~L~~Ql~~i~~~l~~lGi~~~~~~g 83 (90)
+++++......+++.|...||.++..+.
T Consensus 154 t~~e~~~~k~~i~~~l~~~~i~i~~~~~ 181 (270)
T 3sop_A 154 TLEEKSEFKQRVRKELEVNGIEFYPQKE 181 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCSSCSC
T ss_pred CHHHHHHHHHHHHHHHHHcCccccCCCC
Confidence 5678888889999999999999886554
No 89
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=20.34 E-value=54 Score=23.55 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.3
Q ss_pred CCCchhHHHhHHHHHHHHHHc
Q 046914 54 PPTPDTIVQGLQYLKASIKAM 74 (90)
Q Consensus 54 ~~~P~~L~~Ql~~i~~~l~~l 74 (90)
.+.|+.+..|+|.|+++|+..
T Consensus 6 ~~lp~~~~~~~~~~~~~l~~~ 26 (264)
T 2ilr_A 6 LELPKAIQDQLPRLQQLLKTL 26 (264)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred hhCcHHHHhccHHHHHHHHHH
Confidence 468999999999999999987
Done!