BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046918
         (251 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
           Resolution
 pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
           Resolution
          Length = 297

 Score = 31.2 bits (69), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 38  LHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSR 97
           + R FH    V++D E   +  + +R WL DL+  + D E+VL E  T ++ +Q     R
Sbjct: 185 IRRNFH---KVIQDEEFYTLPFHLIRDWLSDLE-ITVDSEEVLFE--TVLKWVQRNAEER 238

Query: 98  DTNASQPVRTVRPSFIIPSYW---FSPGQLVRRHDIATKI 134
           +    +  + +R S + P+Y      P +LV  +++  K+
Sbjct: 239 ERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKL 278


>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
          Intracellular Mla Immune Receptors Defines A Minimal
          Functional Module For Triggering Cell Death
          Length = 115

 Score = 31.2 bits (69), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 6  VSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKA-VVEDAE-KRQMKENAVR 63
          +S ++ +L  +L E    E +L  G ++ +E+L +      A +++  E  R+  ++  +
Sbjct: 3  ISNLIPKLGELLTE----EFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDK 58

Query: 64 VWLDDLKHASYDMEDVLDEW 83
          +W D+++  SY +EDV+D++
Sbjct: 59 LWADEVRELSYVIEDVVDKF 78


>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
 pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
          Length = 279

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 38  LHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSR 97
           + R FH    V++D E   +  + +R WL DL+  + D E+VL E  T ++ +Q     R
Sbjct: 167 IRRNFH---KVIQDEEFYTLPFHLIRDWLSDLE-ITVDSEEVLFE--TVLKWVQRNAEER 220

Query: 98  DTNASQPVRTVRPSFIIPSYW---FSPGQLVRRHDIATKI 134
           +    +  + +R S   P+Y      P +LV  +++  K+
Sbjct: 221 ERYFEELFKLLRLSQXKPTYLTRHVKPERLVANNEVCVKL 260


>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
           Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
          Length = 914

 Score = 28.5 bits (62), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 63  RVWLDDLKHASYDM--EDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPS 116
           R W +D     Y    +++L+ WN  +     KR+     A++ +   RP F I S
Sbjct: 624 RTWTEDYIERRYGKTNKEILEAWNIILDTAYKKRNDYYQGAAESIINARPGFGIKS 679


>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
           In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
 pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
           In Complex With Beta-N-Acetyl-D-Glucosamine
 pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
           In Complex With Pugnac
 pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
          Length = 891

 Score = 28.5 bits (62), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 63  RVWLDDLKHASYDM--EDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPS 116
           R W +D     Y    +++L+ WN  +     KR+     A++ +   RP F I S
Sbjct: 601 RTWTEDYIERRYGKTNKEILEAWNIILDTAYKKRNDYYQGAAESIINARPGFGIKS 656


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,888,182
Number of Sequences: 62578
Number of extensions: 195878
Number of successful extensions: 507
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 13
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)