Query 046918
Match_columns 251
No_of_seqs 187 out of 1500
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 1.8E-26 3.9E-31 219.8 16.4 217 3-251 2-232 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.5 3.5E-14 7.6E-19 120.7 6.6 70 166-250 1-70 (287)
3 PLN03210 Resistant to P. syrin 99.0 6.5E-10 1.4E-14 111.0 9.0 63 156-236 180-242 (1153)
4 cd01128 rho_factor Transcripti 98.7 1.9E-08 4E-13 83.7 6.2 52 198-250 15-68 (249)
5 PRK09376 rho transcription ter 98.7 1.1E-08 2.4E-13 89.3 4.6 52 199-251 169-222 (416)
6 TIGR00767 rho transcription te 98.3 1.1E-06 2.3E-11 77.3 5.9 52 199-251 168-221 (415)
7 PF13191 AAA_16: AAA ATPase do 98.2 1.2E-06 2.5E-11 69.3 4.4 49 162-224 1-49 (185)
8 PRK11331 5-methylcytosine-spec 98.1 1.3E-05 2.8E-10 71.6 8.9 68 162-248 176-243 (459)
9 PRK00411 cdc6 cell division co 98.0 1.1E-05 2.5E-10 71.7 6.4 76 162-250 31-106 (394)
10 PTZ00202 tuzin; Provisional 98.0 4.3E-05 9.2E-10 67.9 9.6 72 157-251 259-330 (550)
11 TIGR02928 orc1/cdc6 family rep 98.0 1.1E-05 2.4E-10 71.0 6.0 76 162-250 16-95 (365)
12 PF01637 Arch_ATPase: Archaeal 97.9 6.3E-06 1.4E-10 67.3 3.3 43 163-222 1-43 (234)
13 cd00009 AAA The AAA+ (ATPases 97.9 4E-05 8.7E-10 57.4 6.6 59 165-242 2-60 (151)
14 PF13207 AAA_17: AAA domain; P 97.6 5E-05 1.1E-09 55.8 3.0 22 201-222 1-22 (121)
15 PF05496 RuvB_N: Holliday junc 97.6 4.2E-05 9.2E-10 62.1 2.3 54 162-229 25-78 (233)
16 TIGR02903 spore_lon_C ATP-depe 97.5 0.0021 4.5E-08 60.6 13.6 60 162-238 155-217 (615)
17 PRK06696 uridine kinase; Valid 97.5 0.00013 2.7E-09 59.9 4.7 43 166-222 3-45 (223)
18 KOG2028 ATPase related to the 97.5 0.00016 3.4E-09 62.5 5.1 47 198-248 161-211 (554)
19 TIGR03015 pepcterm_ATPase puta 97.5 0.00031 6.8E-09 59.0 6.7 49 199-250 43-91 (269)
20 TIGR00635 ruvB Holliday juncti 97.5 0.00012 2.7E-09 62.8 4.0 49 162-222 5-53 (305)
21 PF13401 AAA_22: AAA domain; P 97.4 6.2E-05 1.3E-09 56.0 1.6 52 199-250 4-58 (131)
22 PRK07667 uridine kinase; Provi 97.3 0.00036 7.8E-09 55.9 4.8 38 170-222 3-40 (193)
23 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00026 5.6E-09 61.7 4.0 51 162-223 52-102 (361)
24 PRK13342 recombination factor 97.3 0.00035 7.5E-09 62.7 4.9 44 162-222 13-59 (413)
25 KOG2543 Origin recognition com 97.3 0.0007 1.5E-08 58.8 6.2 71 162-251 7-77 (438)
26 COG0466 Lon ATP-dependent Lon 97.2 0.0027 5.8E-08 59.4 9.8 55 162-229 324-378 (782)
27 PRK00080 ruvB Holliday junctio 97.2 0.00039 8.4E-09 60.5 4.2 49 162-222 26-74 (328)
28 PF05659 RPW8: Arabidopsis bro 97.2 0.012 2.5E-07 45.0 11.6 83 2-84 3-86 (147)
29 COG2256 MGS1 ATPase related to 97.2 0.00053 1.2E-08 59.9 4.5 31 197-229 46-76 (436)
30 PF13238 AAA_18: AAA domain; P 97.1 0.00037 7.9E-09 51.4 2.7 21 202-222 1-21 (129)
31 PF13173 AAA_14: AAA domain 97.1 0.0006 1.3E-08 50.8 3.7 38 199-239 2-39 (128)
32 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.00099 2.2E-08 54.4 5.1 38 199-238 38-75 (226)
33 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0025 5.5E-08 52.4 6.9 51 197-247 17-71 (235)
34 PRK06547 hypothetical protein; 96.9 0.0014 3E-08 51.6 4.8 26 197-222 13-38 (172)
35 TIGR02237 recomb_radB DNA repa 96.9 0.0025 5.4E-08 51.5 6.2 49 197-248 10-58 (209)
36 CHL00095 clpC Clp protease ATP 96.9 0.00091 2E-08 65.2 4.2 44 162-222 180-223 (821)
37 PRK12402 replication factor C 96.9 0.0012 2.6E-08 57.3 4.6 44 162-222 16-59 (337)
38 PRK15455 PrkA family serine pr 96.9 0.0011 2.3E-08 61.1 4.3 49 162-221 77-125 (644)
39 KOG2004 Mitochondrial ATP-depe 96.9 0.019 4.1E-07 54.0 12.3 49 162-221 412-460 (906)
40 cd02019 NK Nucleoside/nucleoti 96.8 0.00093 2E-08 44.1 2.5 22 201-222 1-22 (69)
41 COG0572 Udk Uridine kinase [Nu 96.8 0.001 2.2E-08 53.9 3.1 28 197-224 6-33 (218)
42 PRK13341 recombination factor 96.8 0.0016 3.4E-08 62.3 4.7 49 162-229 29-80 (725)
43 PF13671 AAA_33: AAA domain; P 96.8 0.0011 2.5E-08 49.9 3.1 21 201-221 1-21 (143)
44 PRK04195 replication factor C 96.8 0.0011 2.3E-08 60.8 3.4 48 162-222 15-62 (482)
45 TIGR01242 26Sp45 26S proteasom 96.8 0.0013 2.9E-08 58.0 3.9 56 162-222 123-179 (364)
46 smart00382 AAA ATPases associa 96.8 0.0013 2.7E-08 48.6 3.2 25 199-223 2-26 (148)
47 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0015 3.3E-08 63.7 4.4 44 162-222 188-231 (852)
48 TIGR02639 ClpA ATP-dependent C 96.7 0.0017 3.7E-08 62.5 4.4 44 162-222 183-226 (731)
49 PRK10751 molybdopterin-guanine 96.7 0.0018 3.9E-08 50.9 3.7 25 198-222 5-29 (173)
50 PF03205 MobB: Molybdopterin g 96.7 0.0014 3E-08 49.8 3.0 39 200-239 1-39 (140)
51 PRK05541 adenylylsulfate kinas 96.7 0.0016 3.5E-08 51.2 3.5 26 197-222 5-30 (176)
52 PRK10865 protein disaggregatio 96.7 0.0018 4E-08 63.2 4.4 44 162-222 179-222 (857)
53 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0023 5.1E-08 53.9 4.4 49 199-249 69-119 (274)
54 PHA00729 NTP-binding motif con 96.7 0.0025 5.5E-08 52.1 4.5 24 199-222 17-40 (226)
55 TIGR00763 lon ATP-dependent pr 96.7 0.016 3.4E-07 56.3 10.5 50 162-222 321-370 (775)
56 PRK00440 rfc replication facto 96.7 0.0055 1.2E-07 52.7 6.8 44 162-222 18-61 (319)
57 PRK06893 DNA replication initi 96.7 0.0016 3.4E-08 53.7 3.2 37 200-238 40-76 (229)
58 PHA02544 44 clamp loader, smal 96.6 0.0029 6.3E-08 54.6 4.7 45 162-222 22-66 (316)
59 PRK09270 nucleoside triphospha 96.6 0.002 4.4E-08 53.0 3.6 26 197-222 31-56 (229)
60 PLN03025 replication factor C 96.6 0.0053 1.2E-07 53.1 6.4 44 162-222 14-57 (319)
61 TIGR00554 panK_bact pantothena 96.6 0.0021 4.5E-08 54.8 3.7 25 197-221 60-84 (290)
62 PF08477 Miro: Miro-like prote 96.6 0.0018 4E-08 47.0 2.9 23 202-224 2-24 (119)
63 PRK03992 proteasome-activating 96.6 0.0021 4.5E-08 57.3 3.7 57 162-222 132-188 (389)
64 PRK14738 gmk guanylate kinase; 96.6 0.0026 5.6E-08 51.5 3.8 26 197-222 11-36 (206)
65 cd01393 recA_like RecA is a b 96.6 0.0078 1.7E-07 49.2 6.8 49 197-247 17-71 (226)
66 PRK05564 DNA polymerase III su 96.6 0.0094 2E-07 51.5 7.5 69 162-246 5-78 (313)
67 PRK09361 radB DNA repair and r 96.5 0.009 2E-07 48.9 7.0 47 197-246 21-67 (225)
68 PF01583 APS_kinase: Adenylyls 96.5 0.0024 5.3E-08 49.2 3.3 24 199-222 2-25 (156)
69 PF00004 AAA: ATPase family as 96.5 0.002 4.3E-08 47.6 2.8 21 202-222 1-21 (132)
70 COG2255 RuvB Holliday junction 96.5 0.0021 4.5E-08 54.0 3.0 49 162-222 27-75 (332)
71 PRK05439 pantothenate kinase; 96.5 0.0047 1E-07 53.1 5.2 26 196-221 83-108 (311)
72 cd02020 CMPK Cytidine monophos 96.5 0.002 4.2E-08 48.8 2.6 21 201-221 1-21 (147)
73 PRK10787 DNA-binding ATP-depen 96.5 0.013 2.9E-07 56.6 8.7 50 162-222 323-372 (784)
74 TIGR02881 spore_V_K stage V sp 96.5 0.0014 3E-08 55.1 1.8 25 197-221 40-64 (261)
75 PRK03846 adenylylsulfate kinas 96.5 0.003 6.5E-08 50.7 3.7 26 197-222 22-47 (198)
76 PF00005 ABC_tran: ABC transpo 96.5 0.0027 5.8E-08 47.5 3.2 24 199-222 11-34 (137)
77 cd01878 HflX HflX subfamily. 96.5 0.012 2.7E-07 47.1 7.2 26 198-223 40-65 (204)
78 PRK14963 DNA polymerase III su 96.4 0.0027 5.9E-08 58.3 3.6 46 162-223 15-60 (504)
79 PF00910 RNA_helicase: RNA hel 96.4 0.0017 3.6E-08 46.9 1.8 21 202-222 1-21 (107)
80 TIGR03346 chaperone_ClpB ATP-d 96.4 0.0036 7.8E-08 61.3 4.5 44 162-222 174-217 (852)
81 cd00071 GMPK Guanosine monopho 96.4 0.0025 5.5E-08 48.1 2.7 22 201-222 1-22 (137)
82 COG0542 clpA ATP-binding subun 96.4 0.1 2.3E-06 50.0 13.8 52 162-221 492-543 (786)
83 COG1474 CDC6 Cdc6-related prot 96.4 0.0072 1.6E-07 53.3 5.7 73 162-250 18-93 (366)
84 cd02021 GntK Gluconate kinase 96.3 0.0027 5.8E-08 48.5 2.6 23 201-223 1-23 (150)
85 PRK08727 hypothetical protein; 96.3 0.0076 1.7E-07 49.8 5.5 38 200-239 42-79 (233)
86 PRK08903 DnaA regulatory inact 96.3 0.0058 1.3E-07 50.1 4.8 24 199-222 42-65 (227)
87 PLN02318 phosphoribulokinase/u 96.3 0.0048 1E-07 57.2 4.5 26 197-222 63-88 (656)
88 PF04665 Pox_A32: Poxvirus A32 96.3 0.0046 1E-07 51.1 4.1 37 199-237 13-49 (241)
89 COG1120 FepC ABC-type cobalami 96.3 0.0031 6.7E-08 52.6 3.1 24 199-222 28-51 (258)
90 PRK13531 regulatory ATPase Rav 96.3 0.011 2.4E-07 53.7 6.7 42 162-222 21-62 (498)
91 PF12061 DUF3542: Protein of u 96.3 0.013 2.8E-07 49.8 6.5 77 4-84 296-373 (402)
92 cd00820 PEPCK_HprK Phosphoenol 96.3 0.004 8.6E-08 44.9 3.1 22 199-220 15-36 (107)
93 TIGR00073 hypB hydrogenase acc 96.3 0.0039 8.5E-08 50.4 3.5 26 197-222 20-45 (207)
94 PRK14962 DNA polymerase III su 96.3 0.0058 1.3E-07 55.7 4.9 45 162-222 15-59 (472)
95 COG1116 TauB ABC-type nitrate/ 96.3 0.0035 7.5E-08 51.7 3.0 23 199-221 29-51 (248)
96 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0069 1.5E-07 45.5 4.3 25 199-223 22-46 (133)
97 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.0037 8E-08 50.9 3.1 24 199-222 30-53 (218)
98 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0038 8.1E-08 50.6 3.1 24 199-222 27-50 (211)
99 COG1763 MobB Molybdopterin-gua 96.3 0.0035 7.6E-08 48.6 2.7 23 199-221 2-24 (161)
100 PRK14961 DNA polymerase III su 96.2 0.0069 1.5E-07 53.5 5.0 45 162-222 17-61 (363)
101 KOG1532 GTPase XAB1, interacts 96.2 0.0037 8E-08 52.2 3.0 27 197-223 17-43 (366)
102 PF00158 Sigma54_activat: Sigm 96.2 0.0055 1.2E-07 48.0 3.8 45 163-222 1-45 (168)
103 PRK08084 DNA replication initi 96.2 0.0092 2E-07 49.3 5.3 24 199-222 45-68 (235)
104 COG1124 DppF ABC-type dipeptid 96.2 0.0039 8.4E-08 51.2 3.0 23 199-221 33-55 (252)
105 PRK09087 hypothetical protein; 96.2 0.0067 1.4E-07 49.9 4.4 24 199-222 44-67 (226)
106 COG0467 RAD55 RecA-superfamily 96.2 0.0089 1.9E-07 50.2 5.2 43 197-241 21-63 (260)
107 cd01394 radB RadB. The archaea 96.2 0.015 3.2E-07 47.3 6.4 43 197-241 17-59 (218)
108 TIGR01166 cbiO cobalt transpor 96.2 0.0043 9.4E-08 49.4 3.2 24 199-222 18-41 (190)
109 cd03238 ABC_UvrA The excision 96.2 0.0043 9.2E-08 49.0 3.0 23 199-221 21-43 (176)
110 TIGR00960 3a0501s02 Type II (G 96.2 0.0043 9.3E-08 50.4 3.2 24 199-222 29-52 (216)
111 PRK04841 transcriptional regul 96.1 0.012 2.5E-07 58.0 6.5 46 198-249 31-77 (903)
112 cd03229 ABC_Class3 This class 96.1 0.0047 1E-07 48.7 3.1 24 199-222 26-49 (178)
113 PRK11034 clpA ATP-dependent Cl 96.1 0.0061 1.3E-07 58.6 4.4 44 162-222 187-230 (758)
114 COG1126 GlnQ ABC-type polar am 96.1 0.0058 1.3E-07 49.4 3.4 34 199-235 28-61 (240)
115 COG1136 SalX ABC-type antimicr 96.1 0.0049 1.1E-07 50.4 3.1 23 199-221 31-53 (226)
116 cd03263 ABC_subfamily_A The AB 96.1 0.005 1.1E-07 50.2 3.2 24 199-222 28-51 (220)
117 cd03293 ABC_NrtD_SsuB_transpor 96.1 0.005 1.1E-07 50.2 3.2 24 199-222 30-53 (220)
118 cd03261 ABC_Org_Solvent_Resist 96.1 0.005 1.1E-07 50.8 3.2 24 199-222 26-49 (235)
119 PRK10865 protein disaggregatio 96.1 0.22 4.8E-06 49.0 14.8 52 162-221 569-620 (857)
120 cd03222 ABC_RNaseL_inhibitor T 96.1 0.005 1.1E-07 48.7 3.0 24 199-222 25-48 (177)
121 PRK10536 hypothetical protein; 96.1 0.012 2.5E-07 49.2 5.2 51 162-231 56-106 (262)
122 TIGR02673 FtsE cell division A 96.1 0.0052 1.1E-07 49.8 3.2 24 199-222 28-51 (214)
123 cd03265 ABC_DrrA DrrA is the A 96.1 0.0087 1.9E-07 48.8 4.5 24 199-222 26-49 (220)
124 cd02027 APSK Adenosine 5'-phos 96.1 0.0045 9.7E-08 47.4 2.6 22 201-222 1-22 (149)
125 cd03297 ABC_ModC_molybdenum_tr 96.1 0.0059 1.3E-07 49.6 3.4 25 197-222 22-46 (214)
126 cd03269 ABC_putative_ATPase Th 96.1 0.0053 1.1E-07 49.7 3.1 24 199-222 26-49 (210)
127 PF01926 MMR_HSR1: 50S ribosom 96.1 0.0058 1.3E-07 44.4 3.1 21 202-222 2-22 (116)
128 PLN02796 D-glycerate 3-kinase 96.1 0.0059 1.3E-07 53.1 3.5 26 197-222 98-123 (347)
129 cd03259 ABC_Carb_Solutes_like 96.1 0.0054 1.2E-07 49.7 3.1 24 199-222 26-49 (213)
130 TIGR02315 ABC_phnC phosphonate 96.1 0.0052 1.1E-07 50.8 3.1 24 199-222 28-51 (243)
131 TIGR03499 FlhF flagellar biosy 96.1 0.0059 1.3E-07 52.0 3.4 25 198-222 193-217 (282)
132 cd04155 Arl3 Arl3 subfamily. 96.0 0.0052 1.1E-07 47.7 2.9 24 199-222 14-37 (173)
133 TIGR02236 recomb_radA DNA repa 96.0 0.024 5.2E-07 48.9 7.2 52 197-248 93-148 (310)
134 cd03235 ABC_Metallic_Cations A 96.0 0.0053 1.1E-07 49.8 3.0 24 199-222 25-48 (213)
135 PRK12608 transcription termina 96.0 0.013 2.7E-07 51.6 5.4 49 200-250 134-185 (380)
136 cd03256 ABC_PhnC_transporter A 96.0 0.0057 1.2E-07 50.5 3.2 24 199-222 27-50 (241)
137 PRK10584 putative ABC transpor 96.0 0.0056 1.2E-07 50.2 3.1 24 199-222 36-59 (228)
138 cd03226 ABC_cobalt_CbiO_domain 96.0 0.0059 1.3E-07 49.2 3.2 24 199-222 26-49 (205)
139 PRK06620 hypothetical protein; 96.0 0.0054 1.2E-07 50.0 2.9 24 200-223 45-68 (214)
140 TIGR02211 LolD_lipo_ex lipopro 96.0 0.0057 1.2E-07 49.8 3.1 24 199-222 31-54 (221)
141 PTZ00112 origin recognition co 96.0 0.018 4E-07 55.7 6.7 49 162-222 756-804 (1164)
142 cd03264 ABC_drug_resistance_li 96.0 0.0053 1.1E-07 49.7 2.8 22 201-222 27-48 (211)
143 cd03260 ABC_PstB_phosphate_tra 96.0 0.0059 1.3E-07 50.0 3.1 24 199-222 26-49 (227)
144 cd03296 ABC_CysA_sulfate_impor 96.0 0.0058 1.2E-07 50.6 3.1 24 199-222 28-51 (239)
145 PRK12377 putative replication 96.0 0.0061 1.3E-07 50.8 3.2 39 199-239 101-139 (248)
146 cd03292 ABC_FtsE_transporter F 96.0 0.006 1.3E-07 49.4 3.1 24 199-222 27-50 (214)
147 CHL00181 cbbX CbbX; Provisiona 96.0 0.015 3.2E-07 49.7 5.6 23 200-222 60-82 (287)
148 cd03116 MobB Molybdenum is an 96.0 0.0068 1.5E-07 47.0 3.2 23 200-222 2-24 (159)
149 TIGR03864 PQQ_ABC_ATP ABC tran 96.0 0.0061 1.3E-07 50.3 3.1 24 199-222 27-50 (236)
150 PRK15177 Vi polysaccharide exp 96.0 0.0064 1.4E-07 49.5 3.2 24 199-222 13-36 (213)
151 PRK11889 flhF flagellar biosyn 96.0 0.0066 1.4E-07 53.8 3.4 25 198-222 240-264 (436)
152 PLN02348 phosphoribulokinase 96.0 0.0072 1.6E-07 53.4 3.6 26 197-222 47-72 (395)
153 PRK13541 cytochrome c biogenes 96.0 0.0067 1.4E-07 48.5 3.2 24 199-222 26-49 (195)
154 cd03257 ABC_NikE_OppD_transpor 95.9 0.0063 1.4E-07 49.8 3.1 24 199-222 31-54 (228)
155 PF10662 PduV-EutP: Ethanolami 95.9 0.0074 1.6E-07 45.8 3.2 24 200-223 2-25 (143)
156 PF07728 AAA_5: AAA domain (dy 95.9 0.0059 1.3E-07 45.9 2.7 20 202-221 2-21 (139)
157 cd03266 ABC_NatA_sodium_export 95.9 0.011 2.4E-07 48.0 4.5 24 199-222 31-54 (218)
158 cd03224 ABC_TM1139_LivF_branch 95.9 0.0072 1.6E-07 49.3 3.3 24 199-222 26-49 (222)
159 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.0068 1.5E-07 50.5 3.2 24 199-222 25-48 (246)
160 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.0066 1.4E-07 50.5 3.0 23 199-221 30-52 (254)
161 PRK11629 lolD lipoprotein tran 95.9 0.0067 1.5E-07 49.9 3.1 24 199-222 35-58 (233)
162 PRK13538 cytochrome c biogenes 95.9 0.0069 1.5E-07 48.8 3.1 24 199-222 27-50 (204)
163 PRK10247 putative ABC transpor 95.9 0.007 1.5E-07 49.6 3.1 24 199-222 33-56 (225)
164 cd03258 ABC_MetN_methionine_tr 95.9 0.0071 1.5E-07 49.7 3.2 24 199-222 31-54 (233)
165 PRK11248 tauB taurine transpor 95.9 0.0068 1.5E-07 50.7 3.1 24 199-222 27-50 (255)
166 TIGR03608 L_ocin_972_ABC putat 95.9 0.0071 1.5E-07 48.7 3.1 24 199-222 24-47 (206)
167 TIGR01184 ntrCD nitrate transp 95.9 0.0073 1.6E-07 49.7 3.2 24 199-222 11-34 (230)
168 PF00308 Bac_DnaA: Bacterial d 95.9 0.012 2.6E-07 48.1 4.5 25 198-222 33-57 (219)
169 PF03193 DUF258: Protein of un 95.9 0.018 3.9E-07 44.7 5.1 24 200-223 36-59 (161)
170 cd03301 ABC_MalK_N The N-termi 95.9 0.0075 1.6E-07 48.9 3.2 24 199-222 26-49 (213)
171 PTZ00361 26 proteosome regulat 95.9 0.011 2.4E-07 53.3 4.5 57 162-222 184-240 (438)
172 TIGR02770 nickel_nikD nickel i 95.9 0.007 1.5E-07 49.7 3.0 24 199-222 12-35 (230)
173 cd03219 ABC_Mj1267_LivG_branch 95.9 0.0069 1.5E-07 49.9 3.0 24 199-222 26-49 (236)
174 PRK04301 radA DNA repair and r 95.9 0.031 6.8E-07 48.3 7.2 52 197-248 100-155 (317)
175 PRK14956 DNA polymerase III su 95.9 0.011 2.3E-07 53.8 4.3 45 162-222 19-63 (484)
176 PRK10416 signal recognition pa 95.8 0.0092 2E-07 51.6 3.8 26 197-222 112-137 (318)
177 PF03308 ArgK: ArgK protein; 95.8 0.017 3.6E-07 48.1 5.0 39 169-222 14-52 (266)
178 cd03218 ABC_YhbG The ABC trans 95.8 0.0076 1.7E-07 49.5 3.1 24 199-222 26-49 (232)
179 PRK11124 artP arginine transpo 95.8 0.0077 1.7E-07 49.9 3.1 24 199-222 28-51 (242)
180 PRK05642 DNA replication initi 95.8 0.01 2.2E-07 49.0 3.8 38 199-238 45-82 (234)
181 PF05621 TniB: Bacterial TniB 95.8 0.037 8E-07 47.2 7.1 54 197-251 59-117 (302)
182 PF02562 PhoH: PhoH-like prote 95.8 0.0092 2E-07 48.2 3.4 54 164-236 3-56 (205)
183 TIGR01978 sufC FeS assembly AT 95.8 0.0077 1.7E-07 49.8 3.1 24 199-222 26-49 (243)
184 TIGR00750 lao LAO/AO transport 95.8 0.015 3.2E-07 50.0 4.9 26 197-222 32-57 (300)
185 cd03295 ABC_OpuCA_Osmoprotecti 95.8 0.008 1.7E-07 49.8 3.1 24 199-222 27-50 (242)
186 PRK10908 cell division protein 95.8 0.0082 1.8E-07 49.0 3.1 24 199-222 28-51 (222)
187 PRK13540 cytochrome c biogenes 95.8 0.0086 1.9E-07 48.1 3.2 24 199-222 27-50 (200)
188 TIGR01189 ccmA heme ABC export 95.8 0.0089 1.9E-07 47.9 3.2 24 199-222 26-49 (198)
189 PRK11247 ssuB aliphatic sulfon 95.8 0.0082 1.8E-07 50.3 3.1 24 199-222 38-61 (257)
190 cd03278 ABC_SMC_barmotin Barmo 95.8 0.008 1.7E-07 48.3 2.9 20 201-220 24-43 (197)
191 cd03114 ArgK-like The function 95.8 0.0074 1.6E-07 46.2 2.6 22 201-222 1-22 (148)
192 cd03262 ABC_HisP_GlnQ_permease 95.8 0.0086 1.9E-07 48.5 3.1 24 199-222 26-49 (213)
193 cd00879 Sar1 Sar1 subfamily. 95.8 0.0088 1.9E-07 47.3 3.1 23 200-222 20-42 (190)
194 PRK14957 DNA polymerase III su 95.8 0.012 2.7E-07 54.4 4.4 44 162-221 17-60 (546)
195 cd03268 ABC_BcrA_bacitracin_re 95.8 0.0088 1.9E-07 48.3 3.1 24 199-222 26-49 (208)
196 TIGR03689 pup_AAA proteasome A 95.7 0.019 4.1E-07 52.7 5.5 56 162-222 183-239 (512)
197 TIGR01425 SRP54_euk signal rec 95.7 0.021 4.6E-07 51.3 5.7 25 197-221 98-122 (429)
198 cd03232 ABC_PDR_domain2 The pl 95.7 0.0091 2E-07 47.7 3.1 24 199-222 33-56 (192)
199 PRK13539 cytochrome c biogenes 95.7 0.0093 2E-07 48.2 3.2 24 199-222 28-51 (207)
200 PRK14242 phosphate transporter 95.7 0.0088 1.9E-07 49.9 3.1 23 199-221 32-54 (253)
201 PRK14955 DNA polymerase III su 95.7 0.014 2.9E-07 52.2 4.5 44 162-221 17-60 (397)
202 TIGR02324 CP_lyasePhnL phospho 95.7 0.009 2E-07 48.8 3.1 24 199-222 34-57 (224)
203 cd03246 ABCC_Protease_Secretio 95.7 0.0096 2.1E-07 46.7 3.1 24 199-222 28-51 (173)
204 PF07726 AAA_3: ATPase family 95.7 0.0083 1.8E-07 44.6 2.5 27 202-230 2-28 (131)
205 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.0099 2.1E-07 45.2 3.1 24 199-222 26-49 (144)
206 PRK09435 membrane ATPase/prote 95.7 0.016 3.5E-07 50.3 4.7 25 197-221 54-78 (332)
207 PRK09544 znuC high-affinity zi 95.7 0.009 2E-07 49.9 3.1 24 199-222 30-53 (251)
208 TIGR00972 3a0107s01c2 phosphat 95.7 0.0088 1.9E-07 49.7 3.0 24 199-222 27-50 (247)
209 cd03230 ABC_DR_subfamily_A Thi 95.7 0.017 3.7E-07 45.3 4.5 24 199-222 26-49 (173)
210 PRK14245 phosphate ABC transpo 95.7 0.0092 2E-07 49.7 3.1 23 199-221 29-51 (250)
211 PRK10463 hydrogenase nickel in 95.7 0.024 5.2E-07 48.2 5.6 26 197-222 102-127 (290)
212 TIGR00064 ftsY signal recognit 95.7 0.012 2.6E-07 49.8 3.8 25 197-221 70-94 (272)
213 PRK14247 phosphate ABC transpo 95.7 0.0093 2E-07 49.6 3.1 24 199-222 29-52 (250)
214 cd03214 ABC_Iron-Siderophores_ 95.7 0.0099 2.1E-07 46.9 3.1 24 199-222 25-48 (180)
215 TIGR02640 gas_vesic_GvpN gas v 95.7 0.036 7.8E-07 46.6 6.7 40 202-246 24-63 (262)
216 cd03252 ABCC_Hemolysin The ABC 95.7 0.0094 2E-07 49.2 3.1 24 199-222 28-51 (237)
217 PRK14250 phosphate ABC transpo 95.7 0.0095 2E-07 49.4 3.1 24 199-222 29-52 (241)
218 cd03267 ABC_NatA_like Similar 95.7 0.0096 2.1E-07 49.2 3.1 24 199-222 47-70 (236)
219 TIGR02528 EutP ethanolamine ut 95.7 0.0099 2.2E-07 44.6 3.0 22 202-223 3-24 (142)
220 cd01130 VirB11-like_ATPase Typ 95.7 0.018 3.9E-07 45.8 4.6 23 199-221 25-47 (186)
221 COG3899 Predicted ATPase [Gene 95.7 0.012 2.5E-07 57.6 4.1 46 163-222 2-47 (849)
222 COG0410 LivF ABC-type branched 95.7 0.01 2.2E-07 48.4 3.0 27 198-224 28-54 (237)
223 cd03216 ABC_Carb_Monos_I This 95.7 0.011 2.3E-07 46.0 3.1 24 199-222 26-49 (163)
224 cd01983 Fer4_NifH The Fer4_Nif 95.7 0.0094 2E-07 41.2 2.6 22 201-222 1-22 (99)
225 PRK14241 phosphate transporter 95.6 0.0098 2.1E-07 49.8 3.1 24 199-222 30-53 (258)
226 PRK10895 lipopolysaccharide AB 95.6 0.0097 2.1E-07 49.2 3.0 24 199-222 29-52 (241)
227 PRK08116 hypothetical protein; 95.6 0.0098 2.1E-07 50.2 3.1 36 201-238 116-151 (268)
228 PRK11300 livG leucine/isoleuci 95.6 0.01 2.2E-07 49.5 3.2 24 199-222 31-54 (255)
229 PLN02200 adenylate kinase fami 95.6 0.012 2.6E-07 48.6 3.6 25 197-221 41-65 (234)
230 TIGR01277 thiQ thiamine ABC tr 95.6 0.01 2.2E-07 48.2 3.1 24 199-222 24-47 (213)
231 cd03215 ABC_Carb_Monos_II This 95.6 0.011 2.3E-07 46.8 3.1 24 199-222 26-49 (182)
232 PRK13946 shikimate kinase; Pro 95.6 0.009 1.9E-07 47.4 2.7 24 199-222 10-33 (184)
233 TIGR01188 drrA daunorubicin re 95.6 0.01 2.2E-07 51.0 3.2 24 199-222 19-42 (302)
234 cd03228 ABCC_MRP_Like The MRP 95.6 0.011 2.4E-07 46.3 3.2 24 199-222 28-51 (171)
235 cd03223 ABCD_peroxisomal_ALDP 95.6 0.011 2.3E-07 46.1 3.1 24 199-222 27-50 (166)
236 PRK11264 putative amino-acid A 95.6 0.01 2.2E-07 49.4 3.1 24 199-222 29-52 (250)
237 PRK09493 glnQ glutamine ABC tr 95.6 0.01 2.2E-07 49.1 3.1 24 199-222 27-50 (240)
238 COG0529 CysC Adenylylsulfate k 95.6 0.013 2.8E-07 45.9 3.4 26 197-222 21-46 (197)
239 PRK10575 iron-hydroxamate tran 95.6 0.0097 2.1E-07 50.1 3.0 24 199-222 37-60 (265)
240 PRK14274 phosphate ABC transpo 95.6 0.01 2.2E-07 49.7 3.1 23 199-221 38-60 (259)
241 PLN03046 D-glycerate 3-kinase; 95.6 0.013 2.8E-07 52.2 3.8 25 197-221 210-234 (460)
242 cd03231 ABC_CcmA_heme_exporter 95.6 0.011 2.4E-07 47.5 3.2 24 199-222 26-49 (201)
243 PLN02924 thymidylate kinase 95.6 0.032 6.9E-07 45.7 5.9 27 197-223 14-40 (220)
244 PLN03187 meiotic recombination 95.6 0.034 7.3E-07 48.6 6.4 52 197-248 124-179 (344)
245 PRK11831 putative ABC transpor 95.6 0.01 2.2E-07 50.0 3.1 24 199-222 33-56 (269)
246 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.011 2.4E-07 47.8 3.2 24 199-222 24-47 (211)
247 PRK14239 phosphate transporter 95.6 0.01 2.3E-07 49.4 3.1 23 199-221 31-53 (252)
248 TIGR02238 recomb_DMC1 meiotic 95.6 0.029 6.3E-07 48.4 5.9 52 197-248 94-149 (313)
249 PRK13648 cbiO cobalt transport 95.6 0.017 3.8E-07 48.6 4.4 24 199-222 35-58 (269)
250 PRK10744 pstB phosphate transp 95.6 0.011 2.3E-07 49.7 3.1 24 199-222 39-62 (260)
251 cd03233 ABC_PDR_domain1 The pl 95.6 0.01 2.3E-07 47.8 3.0 24 199-222 33-56 (202)
252 PRK13649 cbiO cobalt transport 95.6 0.01 2.2E-07 50.3 3.1 24 199-222 33-56 (280)
253 CHL00081 chlI Mg-protoporyphyr 95.6 0.016 3.4E-07 50.8 4.2 43 162-221 18-60 (350)
254 TIGR03410 urea_trans_UrtE urea 95.6 0.011 2.3E-07 48.6 3.1 24 199-222 26-49 (230)
255 PRK13638 cbiO cobalt transport 95.6 0.01 2.2E-07 50.1 3.0 24 199-222 27-50 (271)
256 COG3638 ABC-type phosphate/pho 95.6 0.011 2.4E-07 48.4 3.0 23 199-221 30-52 (258)
257 PRK11701 phnK phosphonate C-P 95.6 0.011 2.4E-07 49.5 3.2 24 199-222 32-55 (258)
258 PRK10619 histidine/lysine/argi 95.6 0.011 2.4E-07 49.4 3.2 24 199-222 31-54 (257)
259 PRK14256 phosphate ABC transpo 95.6 0.011 2.4E-07 49.3 3.1 24 199-222 30-53 (252)
260 cd03247 ABCC_cytochrome_bd The 95.6 0.012 2.5E-07 46.4 3.1 24 199-222 28-51 (178)
261 cd03274 ABC_SMC4_euk Eukaryoti 95.6 0.011 2.4E-07 48.1 3.1 22 199-220 25-46 (212)
262 PTZ00454 26S protease regulato 95.6 0.018 4E-07 51.4 4.6 56 162-222 146-202 (398)
263 PRK14722 flhF flagellar biosyn 95.6 0.013 2.8E-07 51.7 3.6 24 199-222 137-160 (374)
264 cd01858 NGP_1 NGP-1. Autoanti 95.6 0.025 5.5E-07 43.5 4.9 26 199-224 102-127 (157)
265 cd03294 ABC_Pro_Gly_Bertaine T 95.6 0.011 2.4E-07 49.9 3.1 24 199-222 50-73 (269)
266 cd01864 Rab19 Rab19 subfamily. 95.6 0.011 2.5E-07 45.5 3.0 23 200-222 4-26 (165)
267 cd03245 ABCC_bacteriocin_expor 95.6 0.011 2.4E-07 48.1 3.1 24 199-222 30-53 (220)
268 PRK08099 bifunctional DNA-bind 95.6 0.0099 2.1E-07 53.1 2.9 26 197-222 217-242 (399)
269 TIGR02902 spore_lonB ATP-depen 95.6 0.019 4E-07 53.4 4.8 44 162-222 66-109 (531)
270 PRK14267 phosphate ABC transpo 95.6 0.011 2.4E-07 49.3 3.1 24 199-222 30-53 (253)
271 PRK15056 manganese/iron transp 95.6 0.011 2.4E-07 50.0 3.1 24 199-222 33-56 (272)
272 cd03234 ABCG_White The White s 95.5 0.012 2.7E-07 48.1 3.3 24 199-222 33-56 (226)
273 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.5 0.011 2.5E-07 48.7 3.1 24 199-222 29-52 (238)
274 TIGR03005 ectoine_ehuA ectoine 95.5 0.012 2.5E-07 49.2 3.2 24 199-222 26-49 (252)
275 cd03251 ABCC_MsbA MsbA is an e 95.5 0.012 2.5E-07 48.5 3.1 24 199-222 28-51 (234)
276 PRK07429 phosphoribulokinase; 95.5 0.014 3.1E-07 50.6 3.8 26 197-222 6-31 (327)
277 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.012 2.6E-07 48.2 3.1 24 199-222 48-71 (224)
278 PRK13948 shikimate kinase; Pro 95.5 0.014 3E-07 46.4 3.4 26 197-222 8-33 (182)
279 PRK14238 phosphate transporter 95.5 0.012 2.5E-07 49.8 3.1 24 199-222 50-73 (271)
280 PRK13645 cbiO cobalt transport 95.5 0.011 2.5E-07 50.3 3.1 24 199-222 37-60 (289)
281 PRK05896 DNA polymerase III su 95.5 0.018 4E-07 53.7 4.5 44 162-221 17-60 (605)
282 cd03253 ABCC_ATM1_transporter 95.5 0.012 2.7E-07 48.4 3.1 24 199-222 27-50 (236)
283 PRK14235 phosphate transporter 95.5 0.012 2.6E-07 49.6 3.1 24 199-222 45-68 (267)
284 cd03290 ABCC_SUR1_N The SUR do 95.5 0.012 2.7E-07 47.8 3.1 24 199-222 27-50 (218)
285 PRK14262 phosphate ABC transpo 95.5 0.012 2.6E-07 48.9 3.1 23 199-221 29-51 (250)
286 TIGR00455 apsK adenylylsulfate 95.5 0.016 3.4E-07 45.9 3.6 24 199-222 18-41 (184)
287 TIGR02030 BchI-ChlI magnesium 95.5 0.021 4.5E-07 49.9 4.6 43 162-221 5-47 (337)
288 cd03244 ABCC_MRP_domain2 Domai 95.5 0.021 4.6E-07 46.4 4.5 24 199-222 30-53 (221)
289 TIGR03873 F420-0_ABC_ATP propo 95.5 0.012 2.6E-07 49.1 3.1 24 199-222 27-50 (256)
290 PRK14964 DNA polymerase III su 95.5 0.019 4.2E-07 52.5 4.6 44 162-221 14-57 (491)
291 PRK14949 DNA polymerase III su 95.5 0.017 3.8E-07 56.0 4.4 45 162-222 17-61 (944)
292 PRK11022 dppD dipeptide transp 95.5 0.012 2.6E-07 51.2 3.1 24 199-222 33-56 (326)
293 TIGR02239 recomb_RAD51 DNA rep 95.5 0.033 7.2E-07 48.2 5.8 51 197-247 94-148 (316)
294 PRK14960 DNA polymerase III su 95.5 0.022 4.7E-07 53.7 4.9 44 162-221 16-59 (702)
295 COG4559 ABC-type hemin transpo 95.5 0.014 2.9E-07 47.3 3.1 24 199-222 27-50 (259)
296 PRK14248 phosphate ABC transpo 95.5 0.012 2.6E-07 49.5 3.0 23 199-221 47-69 (268)
297 PRK14273 phosphate ABC transpo 95.5 0.013 2.7E-07 49.0 3.1 24 199-222 33-56 (254)
298 PRK13548 hmuV hemin importer A 95.5 0.013 2.7E-07 49.2 3.1 24 199-222 28-51 (258)
299 PRK14259 phosphate ABC transpo 95.5 0.013 2.7E-07 49.5 3.1 24 199-222 39-62 (269)
300 CHL00131 ycf16 sulfate ABC tra 95.5 0.012 2.7E-07 48.9 3.0 24 199-222 33-56 (252)
301 PRK13640 cbiO cobalt transport 95.5 0.012 2.7E-07 49.9 3.1 24 199-222 33-56 (282)
302 cd03273 ABC_SMC2_euk Eukaryoti 95.5 0.013 2.8E-07 48.8 3.2 22 199-220 25-46 (251)
303 PRK13632 cbiO cobalt transport 95.5 0.012 2.7E-07 49.6 3.1 24 199-222 35-58 (271)
304 PLN03186 DNA repair protein RA 95.4 0.034 7.3E-07 48.6 5.8 52 197-248 121-176 (342)
305 cd03236 ABC_RNaseL_inhibitor_d 95.4 0.013 2.8E-07 49.1 3.1 24 199-222 26-49 (255)
306 PRK00454 engB GTP-binding prot 95.4 0.017 3.7E-07 45.8 3.7 26 197-222 22-47 (196)
307 PRK13543 cytochrome c biogenes 95.4 0.013 2.8E-07 47.6 3.1 24 199-222 37-60 (214)
308 TIGR00390 hslU ATP-dependent p 95.4 0.032 7E-07 49.8 5.7 57 162-222 13-70 (441)
309 PRK11231 fecE iron-dicitrate t 95.4 0.013 2.8E-07 49.0 3.1 24 199-222 28-51 (255)
310 PRK10418 nikD nickel transport 95.4 0.013 2.8E-07 49.0 3.1 24 199-222 29-52 (254)
311 PRK14261 phosphate ABC transpo 95.4 0.013 2.8E-07 48.9 3.1 23 199-221 32-54 (253)
312 PF13245 AAA_19: Part of AAA d 95.4 0.024 5.2E-07 38.2 3.8 23 199-221 10-33 (76)
313 cd03254 ABCC_Glucan_exporter_l 95.4 0.023 5E-07 46.5 4.5 24 199-222 29-52 (229)
314 PRK10771 thiQ thiamine transpo 95.4 0.013 2.8E-07 48.2 3.0 24 199-222 25-48 (232)
315 cd03279 ABC_sbcCD SbcCD and ot 95.4 0.013 2.7E-07 47.7 2.9 22 199-220 28-49 (213)
316 COG4608 AppF ABC-type oligopep 95.4 0.012 2.7E-07 49.1 2.9 23 199-221 39-61 (268)
317 PRK14265 phosphate ABC transpo 95.4 0.013 2.8E-07 49.6 3.1 23 199-221 46-68 (274)
318 PRK14243 phosphate transporter 95.4 0.013 2.9E-07 49.2 3.1 23 199-221 36-58 (264)
319 PRK14237 phosphate transporter 95.4 0.013 2.9E-07 49.3 3.1 24 199-222 46-69 (267)
320 TIGR03740 galliderm_ABC gallid 95.4 0.024 5.1E-07 46.3 4.5 24 199-222 26-49 (223)
321 PRK13650 cbiO cobalt transport 95.4 0.014 2.9E-07 49.6 3.2 24 199-222 33-56 (279)
322 PRK09580 sufC cysteine desulfu 95.4 0.013 2.9E-07 48.6 3.1 24 199-222 27-50 (248)
323 PRK14255 phosphate ABC transpo 95.4 0.014 3E-07 48.7 3.1 23 199-221 31-53 (252)
324 PRK14269 phosphate ABC transpo 95.4 0.014 3E-07 48.5 3.1 24 199-222 28-51 (246)
325 cd00983 recA RecA is a bacter 95.4 0.036 7.8E-07 48.0 5.7 45 197-243 53-97 (325)
326 PRK14240 phosphate transporter 95.4 0.014 3E-07 48.6 3.1 23 199-221 29-51 (250)
327 cd03283 ABC_MutS-like MutS-lik 95.4 0.014 3E-07 47.1 3.0 22 200-221 26-47 (199)
328 cd03248 ABCC_TAP TAP, the Tran 95.4 0.014 3.1E-07 47.7 3.1 24 199-222 40-63 (226)
329 PRK14260 phosphate ABC transpo 95.4 0.014 3E-07 48.9 3.1 24 199-222 33-56 (259)
330 TIGR02314 ABC_MetN D-methionin 95.4 0.014 2.9E-07 51.2 3.1 24 199-222 31-54 (343)
331 TIGR00362 DnaA chromosomal rep 95.4 0.029 6.3E-07 50.2 5.3 24 199-222 136-159 (405)
332 PRK13547 hmuV hemin importer A 95.4 0.014 3E-07 49.4 3.1 24 199-222 27-50 (272)
333 cd03240 ABC_Rad50 The catalyti 95.4 0.014 3.1E-07 47.1 3.0 21 200-220 23-43 (204)
334 PLN02165 adenylate isopentenyl 95.4 0.016 3.4E-07 50.2 3.4 24 199-222 43-66 (334)
335 COG3842 PotA ABC-type spermidi 95.4 0.013 2.9E-07 51.1 3.0 22 200-221 32-53 (352)
336 PRK15093 antimicrobial peptide 95.4 0.014 3.1E-07 50.8 3.2 24 199-222 33-56 (330)
337 PRK14251 phosphate ABC transpo 95.3 0.015 3.1E-07 48.5 3.1 24 199-222 30-53 (251)
338 PRK14270 phosphate ABC transpo 95.3 0.014 3.1E-07 48.6 3.0 24 199-222 30-53 (251)
339 PRK09183 transposase/IS protei 95.3 0.013 2.8E-07 49.2 2.8 23 200-222 103-125 (259)
340 PRK14974 cell division protein 95.3 0.016 3.6E-07 50.4 3.5 24 198-221 139-162 (336)
341 PRK11153 metN DL-methionine tr 95.3 0.014 3.1E-07 51.1 3.1 24 199-222 31-54 (343)
342 PRK13546 teichoic acids export 95.3 0.015 3.2E-07 49.1 3.1 24 199-222 50-73 (264)
343 PLN00020 ribulose bisphosphate 95.3 0.026 5.6E-07 49.6 4.6 26 197-222 146-171 (413)
344 PRK10253 iron-enterobactin tra 95.3 0.014 3.1E-07 49.1 3.0 24 199-222 33-56 (265)
345 PF06309 Torsin: Torsin; Inte 95.3 0.041 8.9E-07 40.8 5.0 51 162-222 26-76 (127)
346 COG4619 ABC-type uncharacteriz 95.3 0.015 3.2E-07 45.4 2.7 23 199-221 29-51 (223)
347 TIGR02012 tigrfam_recA protein 95.3 0.041 8.9E-07 47.6 5.8 45 197-243 53-97 (321)
348 COG0468 RecA RecA/RadA recombi 95.3 0.065 1.4E-06 45.4 6.8 50 197-248 58-107 (279)
349 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.3 0.031 6.7E-07 43.6 4.7 24 199-222 15-38 (174)
350 TIGR02769 nickel_nikE nickel i 95.3 0.016 3.4E-07 48.8 3.2 24 199-222 37-60 (265)
351 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.017 3.8E-07 44.4 3.2 24 199-222 25-48 (157)
352 PRK14266 phosphate ABC transpo 95.3 0.016 3.4E-07 48.3 3.1 23 199-221 29-51 (250)
353 PRK11614 livF leucine/isoleuci 95.3 0.015 3.3E-07 48.0 3.0 24 199-222 31-54 (237)
354 PRK06995 flhF flagellar biosyn 95.3 0.018 3.9E-07 52.5 3.7 24 199-222 256-279 (484)
355 PRK13639 cbiO cobalt transport 95.3 0.016 3.5E-07 49.1 3.2 24 199-222 28-51 (275)
356 PRK14958 DNA polymerase III su 95.3 0.023 4.9E-07 52.4 4.3 45 162-222 17-61 (509)
357 TIGR03411 urea_trans_UrtD urea 95.3 0.016 3.4E-07 48.0 3.1 24 199-222 28-51 (242)
358 TIGR01288 nodI ATP-binding ABC 95.3 0.016 3.5E-07 49.8 3.2 24 199-222 30-53 (303)
359 PRK14253 phosphate ABC transpo 95.3 0.016 3.5E-07 48.1 3.1 24 199-222 29-52 (249)
360 PF13555 AAA_29: P-loop contai 95.3 0.023 5E-07 36.6 3.1 20 201-220 25-44 (62)
361 TIGR03598 GTPase_YsxC ribosome 95.3 0.022 4.8E-07 44.8 3.7 27 197-223 16-42 (179)
362 PF13604 AAA_30: AAA domain; P 95.2 0.025 5.5E-07 45.4 4.1 24 199-222 18-41 (196)
363 PRK15112 antimicrobial peptide 95.2 0.016 3.5E-07 48.8 3.1 24 199-222 39-62 (267)
364 TIGR00968 3a0106s01 sulfate AB 95.2 0.017 3.6E-07 47.8 3.1 24 199-222 26-49 (237)
365 cd03272 ABC_SMC3_euk Eukaryoti 95.2 0.015 3.2E-07 48.1 2.8 22 199-220 23-44 (243)
366 PRK14951 DNA polymerase III su 95.2 0.027 6E-07 52.9 4.9 42 162-219 17-58 (618)
367 PRK12724 flagellar biosynthesi 95.2 0.019 4.2E-07 51.2 3.7 24 199-222 223-246 (432)
368 PRK14275 phosphate ABC transpo 95.2 0.016 3.5E-07 49.4 3.1 23 199-221 65-87 (286)
369 PRK13641 cbiO cobalt transport 95.2 0.017 3.6E-07 49.3 3.2 24 199-222 33-56 (287)
370 PRK08181 transposase; Validate 95.2 0.012 2.6E-07 49.6 2.3 35 201-237 108-142 (269)
371 PRK13646 cbiO cobalt transport 95.2 0.017 3.6E-07 49.3 3.2 24 199-222 33-56 (286)
372 PF08423 Rad51: Rad51; InterP 95.2 0.048 1E-06 45.7 5.9 52 197-248 36-91 (256)
373 PRK03695 vitamin B12-transport 95.2 0.016 3.5E-07 48.2 3.0 24 199-222 22-45 (248)
374 COG1127 Ttg2A ABC-type transpo 95.2 0.017 3.7E-07 47.5 3.0 25 197-221 32-56 (263)
375 PRK13652 cbiO cobalt transport 95.2 0.017 3.7E-07 49.0 3.2 24 199-222 30-53 (277)
376 PRK14721 flhF flagellar biosyn 95.2 0.023 4.9E-07 51.0 4.1 23 199-221 191-213 (420)
377 PRK13644 cbiO cobalt transport 95.2 0.017 3.7E-07 48.9 3.2 24 199-222 28-51 (274)
378 PRK07952 DNA replication prote 95.2 0.028 6E-07 46.8 4.3 38 199-238 99-136 (244)
379 TIGR02323 CP_lyasePhnK phospho 95.2 0.017 3.6E-07 48.2 3.1 24 199-222 29-52 (253)
380 PRK09984 phosphonate/organopho 95.2 0.016 3.6E-07 48.5 3.1 24 199-222 30-53 (262)
381 PRK14271 phosphate ABC transpo 95.2 0.017 3.6E-07 49.0 3.1 24 199-222 47-70 (276)
382 PRK14268 phosphate ABC transpo 95.2 0.017 3.7E-07 48.4 3.1 24 199-222 38-61 (258)
383 PRK14970 DNA polymerase III su 95.2 0.028 6.1E-07 49.6 4.6 45 162-222 18-62 (367)
384 PRK13647 cbiO cobalt transport 95.2 0.017 3.6E-07 48.9 3.1 24 199-222 31-54 (274)
385 cd03369 ABCC_NFT1 Domain 2 of 95.2 0.018 3.8E-07 46.5 3.1 24 199-222 34-57 (207)
386 CHL00095 clpC Clp protease ATP 95.2 0.43 9.4E-06 46.8 13.1 52 162-221 510-561 (821)
387 PRK12323 DNA polymerase III su 95.2 0.028 6E-07 52.9 4.7 44 162-221 17-60 (700)
388 PRK14272 phosphate ABC transpo 95.2 0.017 3.7E-07 48.1 3.1 24 199-222 30-53 (252)
389 PRK14236 phosphate transporter 95.2 0.017 3.7E-07 48.8 3.1 23 199-221 51-73 (272)
390 PRK11308 dppF dipeptide transp 95.2 0.017 3.7E-07 50.2 3.2 24 199-222 41-64 (327)
391 PRK13651 cobalt transporter AT 95.2 0.017 3.7E-07 49.7 3.1 24 199-222 33-56 (305)
392 COG4107 PhnK ABC-type phosphon 95.2 0.017 3.7E-07 45.3 2.8 24 199-222 32-55 (258)
393 PRK11144 modC molybdate transp 95.2 0.017 3.6E-07 50.8 3.1 24 199-222 24-47 (352)
394 PRK14244 phosphate ABC transpo 95.2 0.018 3.8E-07 48.0 3.1 23 199-221 31-53 (251)
395 COG1703 ArgK Putative periplas 95.2 0.026 5.6E-07 47.8 4.0 39 170-223 37-75 (323)
396 TIGR00602 rad24 checkpoint pro 95.2 0.032 6.9E-07 52.6 5.0 49 162-222 85-133 (637)
397 PRK08691 DNA polymerase III su 95.2 0.026 5.5E-07 53.5 4.4 44 162-221 17-60 (709)
398 COG1123 ATPase components of v 95.2 0.016 3.6E-07 53.1 3.0 23 199-221 317-339 (539)
399 TIGR02397 dnaX_nterm DNA polym 95.1 0.036 7.8E-07 48.5 5.1 44 162-221 15-58 (355)
400 PRK09473 oppD oligopeptide tra 95.1 0.017 3.7E-07 50.3 3.0 24 199-222 42-65 (330)
401 PRK07003 DNA polymerase III su 95.1 0.073 1.6E-06 51.0 7.3 44 162-221 17-60 (830)
402 TIGR02142 modC_ABC molybdenum 95.1 0.018 3.8E-07 50.7 3.1 24 199-222 23-46 (354)
403 PRK10867 signal recognition pa 95.1 0.081 1.8E-06 47.7 7.3 24 198-221 99-122 (433)
404 PRK14489 putative bifunctional 95.1 0.03 6.6E-07 49.5 4.6 25 198-222 204-228 (366)
405 PF13086 AAA_11: AAA domain; P 95.1 0.021 4.5E-07 46.3 3.3 49 201-249 19-72 (236)
406 PRK10419 nikE nickel transport 95.1 0.018 4E-07 48.5 3.1 24 199-222 38-61 (268)
407 COG1125 OpuBA ABC-type proline 95.1 0.019 4.2E-07 47.6 3.0 23 199-221 27-49 (309)
408 cd03291 ABCC_CFTR1 The CFTR su 95.1 0.019 4.2E-07 48.8 3.2 24 199-222 63-86 (282)
409 PRK13631 cbiO cobalt transport 95.1 0.019 4.2E-07 49.8 3.2 24 199-222 52-75 (320)
410 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.019 4.2E-07 46.1 3.0 24 199-222 26-49 (200)
411 PRK00149 dnaA chromosomal repl 95.1 0.04 8.6E-07 50.1 5.4 37 199-237 148-186 (450)
412 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.087 1.9E-06 43.5 7.0 41 197-240 19-60 (237)
413 PRK14258 phosphate ABC transpo 95.1 0.019 4.1E-07 48.2 3.1 24 199-222 33-56 (261)
414 KOG3347 Predicted nucleotide k 95.1 0.017 3.6E-07 44.0 2.4 26 197-222 5-30 (176)
415 PRK13637 cbiO cobalt transport 95.1 0.019 4.2E-07 48.9 3.2 24 199-222 33-56 (287)
416 KOG0734 AAA+-type ATPase conta 95.1 0.027 5.8E-07 51.4 4.0 56 162-225 305-363 (752)
417 PRK05703 flhF flagellar biosyn 95.1 0.017 3.8E-07 52.0 2.9 23 199-221 221-243 (424)
418 PRK12727 flagellar biosynthesi 95.1 0.025 5.4E-07 52.0 3.9 24 198-221 349-372 (559)
419 PRK06067 flagellar accessory p 95.1 0.068 1.5E-06 44.0 6.2 43 197-241 23-65 (234)
420 PTZ00035 Rad51 protein; Provis 95.1 0.08 1.7E-06 46.2 6.9 51 197-247 116-170 (337)
421 COG1223 Predicted ATPase (AAA+ 95.1 0.03 6.6E-07 46.6 4.0 52 162-224 122-176 (368)
422 PRK06526 transposase; Provisio 95.1 0.016 3.6E-07 48.5 2.6 24 199-222 98-121 (254)
423 cd01868 Rab11_like Rab11-like. 95.0 0.022 4.7E-07 43.8 3.1 24 200-223 4-27 (165)
424 PF08298 AAA_PrkA: PrkA AAA do 95.0 0.029 6.3E-07 48.8 4.1 49 162-221 62-110 (358)
425 PRK14252 phosphate ABC transpo 95.0 0.021 4.5E-07 48.1 3.1 24 199-222 42-65 (265)
426 PRK13643 cbiO cobalt transport 95.0 0.02 4.3E-07 48.8 3.1 24 199-222 32-55 (288)
427 PRK13635 cbiO cobalt transport 95.0 0.02 4.4E-07 48.6 3.1 24 199-222 33-56 (279)
428 PRK14954 DNA polymerase III su 95.0 0.03 6.5E-07 52.7 4.4 44 162-221 17-60 (620)
429 PRK11000 maltose/maltodextrin 95.0 0.02 4.3E-07 50.7 3.1 24 199-222 29-52 (369)
430 TIGR03522 GldA_ABC_ATP gliding 95.0 0.034 7.4E-07 47.7 4.5 24 199-222 28-51 (301)
431 COG2884 FtsE Predicted ATPase 95.0 0.022 4.9E-07 45.2 3.0 27 199-225 28-54 (223)
432 PRK06835 DNA replication prote 95.0 0.017 3.8E-07 50.2 2.7 38 200-239 184-221 (329)
433 PRK13537 nodulation ABC transp 95.0 0.021 4.6E-07 49.1 3.2 24 199-222 33-56 (306)
434 TIGR01241 FtsH_fam ATP-depende 95.0 0.027 5.7E-07 51.9 4.0 23 200-222 89-111 (495)
435 cd01866 Rab2 Rab2 subfamily. 95.0 0.022 4.9E-07 44.1 3.1 24 199-222 4-27 (168)
436 TIGR02880 cbbX_cfxQ probable R 95.0 0.024 5.3E-07 48.3 3.5 21 201-221 60-80 (284)
437 PRK15079 oligopeptide ABC tran 95.0 0.021 4.6E-07 49.7 3.2 24 199-222 47-70 (331)
438 PRK13636 cbiO cobalt transport 95.0 0.021 4.6E-07 48.6 3.1 24 199-222 32-55 (283)
439 cd03250 ABCC_MRP_domain1 Domai 95.0 0.022 4.8E-07 45.8 3.1 24 199-222 31-54 (204)
440 PRK14254 phosphate ABC transpo 95.0 0.021 4.6E-07 48.6 3.0 24 199-222 65-88 (285)
441 TIGR02639 ClpA ATP-dependent C 95.0 0.036 7.7E-07 53.5 4.9 53 162-222 455-507 (731)
442 cd02034 CooC The accessory pro 94.9 0.022 4.7E-07 41.7 2.7 21 202-222 2-22 (116)
443 PRK06921 hypothetical protein; 94.9 0.028 6.1E-07 47.4 3.7 38 199-238 117-155 (266)
444 PRK14249 phosphate ABC transpo 94.9 0.022 4.8E-07 47.4 3.0 24 199-222 30-53 (251)
445 PRK06645 DNA polymerase III su 94.9 0.036 7.8E-07 51.0 4.6 45 162-222 22-66 (507)
446 PRK14264 phosphate ABC transpo 94.9 0.022 4.8E-07 49.0 3.1 24 199-222 71-94 (305)
447 PRK00771 signal recognition pa 94.9 0.044 9.4E-07 49.5 5.0 25 198-222 94-118 (437)
448 PRK13634 cbiO cobalt transport 94.9 0.022 4.8E-07 48.6 3.1 24 199-222 33-56 (290)
449 PRK14952 DNA polymerase III su 94.9 0.035 7.7E-07 51.9 4.6 45 162-222 14-58 (584)
450 TIGR02982 heterocyst_DevA ABC 94.9 0.023 5.1E-07 46.3 3.0 24 199-222 31-54 (220)
451 cd03213 ABCG_EPDR ABCG transpo 94.9 0.025 5.3E-07 45.3 3.1 24 199-222 35-58 (194)
452 TIGR01420 pilT_fam pilus retra 94.9 0.033 7.2E-07 48.8 4.1 23 199-221 122-144 (343)
453 COG1131 CcmA ABC-type multidru 94.9 0.025 5.4E-07 48.4 3.3 24 199-222 31-54 (293)
454 COG3839 MalK ABC-type sugar tr 94.9 0.023 4.9E-07 49.4 3.0 24 199-222 29-52 (338)
455 PRK15467 ethanolamine utilizat 94.9 0.039 8.5E-07 42.5 4.1 24 200-223 2-25 (158)
456 cd03300 ABC_PotA_N PotA is an 94.9 0.025 5.5E-07 46.5 3.2 24 199-222 26-49 (232)
457 PRK14969 DNA polymerase III su 94.9 0.043 9.3E-07 50.9 5.0 44 162-221 17-60 (527)
458 PTZ00132 GTP-binding nuclear p 94.9 0.023 5.1E-07 46.0 2.9 23 199-221 9-32 (215)
459 PRK09111 DNA polymerase III su 94.8 0.037 8E-07 52.0 4.5 45 162-222 25-69 (598)
460 KOG0744 AAA+-type ATPase [Post 94.8 0.023 4.9E-07 48.7 2.8 39 199-237 177-217 (423)
461 PF07693 KAP_NTPase: KAP famil 94.8 0.084 1.8E-06 45.5 6.5 41 169-223 4-44 (325)
462 cd04114 Rab30 Rab30 subfamily. 94.8 0.03 6.4E-07 43.2 3.3 24 198-221 6-29 (169)
463 PLN02840 tRNA dimethylallyltra 94.8 0.036 7.9E-07 49.5 4.2 26 197-222 19-44 (421)
464 PRK14263 phosphate ABC transpo 94.8 0.025 5.4E-07 47.5 3.1 23 199-221 34-56 (261)
465 TIGR01243 CDC48 AAA family ATP 94.8 0.034 7.4E-07 53.7 4.4 57 162-222 179-235 (733)
466 KOG0991 Replication factor C, 94.8 0.035 7.5E-07 45.6 3.7 43 162-221 28-70 (333)
467 cd03289 ABCC_CFTR2 The CFTR su 94.8 0.025 5.4E-07 47.9 3.1 24 199-222 30-53 (275)
468 PRK09354 recA recombinase A; P 94.8 0.072 1.6E-06 46.6 6.0 45 197-243 58-102 (349)
469 cd01129 PulE-GspE PulE/GspE Th 94.8 0.046 1E-06 46.0 4.7 23 199-221 80-102 (264)
470 PRK10851 sulfate/thiosulfate t 94.8 0.024 5.3E-07 49.8 3.1 24 199-222 28-51 (353)
471 PRK11432 fbpC ferric transport 94.8 0.025 5.4E-07 49.7 3.1 24 199-222 32-55 (351)
472 PRK13642 cbiO cobalt transport 94.8 0.026 5.6E-07 47.8 3.1 24 199-222 33-56 (277)
473 PRK13536 nodulation factor exp 94.8 0.026 5.6E-07 49.4 3.2 24 199-222 67-90 (340)
474 TIGR02868 CydC thiol reductant 94.8 0.023 4.9E-07 52.7 3.0 25 198-222 360-384 (529)
475 cd04154 Arl2 Arl2 subfamily. 94.8 0.026 5.7E-07 43.9 3.0 23 200-222 15-37 (173)
476 PRK13633 cobalt transporter AT 94.8 0.026 5.6E-07 47.9 3.1 24 199-222 36-59 (280)
477 PRK10762 D-ribose transporter 94.8 0.024 5.3E-07 52.2 3.1 24 199-222 30-53 (501)
478 PRK10982 galactose/methyl gala 94.8 0.036 7.8E-07 50.9 4.2 24 199-222 274-297 (491)
479 PRK14088 dnaA chromosomal repl 94.7 0.027 5.9E-07 51.0 3.3 37 199-237 130-168 (440)
480 TIGR02633 xylG D-xylose ABC tr 94.7 0.025 5.4E-07 52.1 3.1 24 199-222 27-50 (500)
481 TIGR01618 phage_P_loop phage n 94.7 0.028 6E-07 46.0 3.0 23 199-221 12-34 (220)
482 cd04116 Rab9 Rab9 subfamily. 94.7 0.037 8E-07 42.7 3.7 24 199-222 5-28 (170)
483 PRK10070 glycine betaine trans 94.7 0.025 5.4E-07 50.5 3.0 24 199-222 54-77 (400)
484 PTZ00133 ADP-ribosylation fact 94.7 0.027 5.9E-07 44.5 2.9 22 201-222 19-40 (182)
485 PRK15134 microcin C ABC transp 94.7 0.025 5.4E-07 52.5 3.1 24 199-222 35-58 (529)
486 COG1134 TagH ABC-type polysacc 94.7 0.03 6.5E-07 46.1 3.1 24 199-222 53-76 (249)
487 PRK11650 ugpC glycerol-3-phosp 94.7 0.027 5.8E-07 49.6 3.1 24 199-222 30-53 (356)
488 cd03299 ABC_ModC_like Archeal 94.7 0.028 6.1E-07 46.3 3.1 24 199-222 25-48 (235)
489 PRK15064 ABC transporter ATP-b 94.7 0.025 5.4E-07 52.5 3.1 24 199-222 27-50 (530)
490 cd03270 ABC_UvrA_I The excisio 94.7 0.023 4.9E-07 46.7 2.5 18 199-216 21-38 (226)
491 TIGR03269 met_CoM_red_A2 methy 94.7 0.026 5.6E-07 52.3 3.1 24 199-222 26-49 (520)
492 COG1135 AbcC ABC-type metal io 94.7 0.028 6E-07 47.9 3.0 23 199-221 32-54 (339)
493 PRK07994 DNA polymerase III su 94.7 0.042 9E-07 51.9 4.5 45 162-222 17-61 (647)
494 PRK12726 flagellar biosynthesi 94.7 0.033 7.2E-07 49.2 3.6 26 197-222 204-229 (407)
495 COG1875 NYN ribonuclease and A 94.7 0.04 8.7E-07 48.0 4.0 39 164-219 227-265 (436)
496 PRK15439 autoinducer 2 ABC tra 94.7 0.026 5.7E-07 52.1 3.1 24 199-222 37-60 (510)
497 cd03288 ABCC_SUR2 The SUR doma 94.7 0.029 6.3E-07 46.9 3.1 24 199-222 47-70 (257)
498 PRK13549 xylose transporter AT 94.7 0.025 5.5E-07 52.1 3.0 24 199-222 288-311 (506)
499 PRK10938 putative molybdenum t 94.7 0.026 5.6E-07 51.8 3.1 24 199-222 29-52 (490)
500 smart00178 SAR Sar1p-like memb 94.7 0.03 6.5E-07 44.2 3.1 23 200-222 18-40 (184)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-26 Score=219.77 Aligned_cols=217 Identities=26% Similarity=0.354 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhchhhHHHh
Q 046918 3 EVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDE 82 (251)
Q Consensus 3 ~~~vs~~~~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~Wl~~l~~~a~d~eD~ld~ 82 (251)
++.++..++++.+. +.+++..+.+.+..+..|+++|..++.++++++..+.....+..|...+++++|++||+++.
T Consensus 2 ~~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777776 57778889999999999999999999999999999887899999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCccccccccccCCCccCCCcccchhhHHHHHHHHHHHHHHHHHhhhhcC----------
Q 046918 83 WNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG---------- 152 (251)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~---------- 152 (251)
|..+....+..+.... ........+ .+.++.......+.+++++-++.+.++.+.... .+.
T Consensus 78 ~~v~~~~~~~~~~l~~--~~~~~~~~c------~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~-~~~~~~~~~~~~~ 148 (889)
T KOG4658|consen 78 FLVEEIERKANDLLST--RSVERQRLC------LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKG-VFEVVGESLDPRE 148 (889)
T ss_pred HHHHHHHHHHhHHhhh--hHHHHHHHh------hhhhHhHhhhhhHhHHHHHHHHHHHHHHhcccc-ceecccccccchh
Confidence 9977665433322000 000000111 001122223333444455554444444443211 010
Q ss_pred ---CCcccCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcc-cccC
Q 046918 153 ---TTSFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV-VSAH 228 (251)
Q Consensus 153 ---~~~~~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~-v~~~ 228 (251)
+.+..+.. . +|.+..++++++.|.+++ ..++||+||||+||||||+.|||+.. ++.+
T Consensus 149 ~~e~~~~~~~~-~-VG~e~~~~kl~~~L~~d~-----------------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~ 209 (889)
T KOG4658|consen 149 KVETRPIQSES-D-VGLETMLEKLWNRLMEDD-----------------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNH 209 (889)
T ss_pred hcccCCCCccc-c-ccHHHHHHHHHHHhccCC-----------------CCEEEEECCCcccHHHHHHHHhcccchhccc
Confidence 11222222 3 999999999999999877 49999999999999999999999987 9999
Q ss_pred CCceEEEEeCCCCCHHHHHHHhC
Q 046918 229 FDKKIWVCVSEPFDDIRIAKAIL 251 (251)
Q Consensus 229 Fd~~~wV~Vs~~~~~~~i~~~Il 251 (251)
||.+|||+||++|+..+|+++|+
T Consensus 210 Fd~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 210 FDGVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred CceEEEEEEcccccHHhHHHHHH
Confidence 99999999999999999999985
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.50 E-value=3.5e-14 Score=120.74 Aligned_cols=70 Identities=37% Similarity=0.535 Sum_probs=62.1
Q ss_pred cchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHH
Q 046918 166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIR 245 (251)
Q Consensus 166 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~ 245 (251)
||.++++|.++|.... .+.++|+|+||||+||||||+.+|++..++.+|+.++||.+++.++...
T Consensus 1 re~~~~~l~~~L~~~~---------------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~ 65 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS---------------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQ 65 (287)
T ss_dssp -HHHHHHHHHHHHTTT---------------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHH
T ss_pred CHHHHHHHHHHhhCCC---------------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccc
Confidence 6789999999998854 4599999999999999999999999877999999999999999999888
Q ss_pred HHHHh
Q 046918 246 IAKAI 250 (251)
Q Consensus 246 i~~~I 250 (251)
++++|
T Consensus 66 ~~~~i 70 (287)
T PF00931_consen 66 LLEQI 70 (287)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 88776
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.04 E-value=6.5e-10 Score=111.02 Aligned_cols=63 Identities=32% Similarity=0.431 Sum_probs=52.7
Q ss_pred ccCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEE
Q 046918 156 FLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWV 235 (251)
Q Consensus 156 ~~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV 235 (251)
..+.. .++|++...+++..+|.-.. .++++|+||||||+||||||+.+|+ ++..+|+..+|+
T Consensus 180 ~~~~~-~~vG~~~~l~~l~~lL~l~~---------------~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv 241 (1153)
T PLN03210 180 SNDFE-DFVGIEDHIAKMSSLLHLES---------------EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFI 241 (1153)
T ss_pred Ccccc-cccchHHHHHHHHHHHcccc---------------CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEe
Confidence 33445 79999999999998885433 4589999999999999999999999 578889988876
Q ss_pred E
Q 046918 236 C 236 (251)
Q Consensus 236 ~ 236 (251)
.
T Consensus 242 ~ 242 (1153)
T PLN03210 242 D 242 (1153)
T ss_pred e
Confidence 3
No 4
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.74 E-value=1.9e-08 Score=83.74 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=46.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC--CCHHHHHHHh
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEP--FDDIRIAKAI 250 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~--~~~~~i~~~I 250 (251)
.-..++|+|++|+|||||++.+|++.... +|+.++||++++. +++.+++++|
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 35689999999999999999999975544 8999999998887 8999999886
No 5
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.73 E-value=1.1e-08 Score=89.26 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=45.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC--CHHHHHHHhC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF--DDIRIAKAIL 251 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~--~~~~i~~~Il 251 (251)
-.-..|+|++|+||||||+.||++.... |||+++||++++.+ ++.+++++|+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 4567899999999999999999975544 89999999999998 8999998874
No 6
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.31 E-value=1.1e-06 Score=77.29 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=44.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC--CCHHHHHHHhC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEP--FDDIRIAKAIL 251 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~--~~~~~i~~~Il 251 (251)
-..++|+|++|+|||||++.|++.-.. ++|+..+||.+++. +++.+++++|+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIl 221 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVK 221 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhh
Confidence 557899999999999999999996433 37999999999976 89999998873
No 7
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.24 E-value=1.2e-06 Score=69.30 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=33.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV 224 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~ 224 (251)
.++||+.+.+++...|.... ....+++-|+|..|+|||+|++.++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~--------------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ--------------SGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS--------------S-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH--------------cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999995222 24479999999999999999999998533
No 8
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.13 E-value=1.3e-05 Score=71.61 Aligned_cols=68 Identities=16% Similarity=0.052 Sum_probs=56.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
++++.+...+.++..|... +.|-++|++|+||||+|+.+.+.......|+.+.||++++.+
T Consensus 176 d~~i~e~~le~l~~~L~~~-------------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsy 236 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK-------------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSY 236 (459)
T ss_pred cccCCHHHHHHHHHHHhcC-------------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccc
Confidence 5788888899999988753 357779999999999999999865555678889999999999
Q ss_pred CHHHHHH
Q 046918 242 DDIRIAK 248 (251)
Q Consensus 242 ~~~~i~~ 248 (251)
+..+++.
T Consensus 237 SYeDFI~ 243 (459)
T PRK11331 237 SYEDFIQ 243 (459)
T ss_pred cHHHHhc
Confidence 8887753
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.01 E-value=1.1e-05 Score=71.68 Aligned_cols=76 Identities=21% Similarity=0.167 Sum_probs=49.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
.++||+++.+++...|...-. ......+-|+|+.|+||||+++.++++.......-..++|......
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~-------------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALR-------------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 699999999999998854320 1223456799999999999999999963322211233555555555
Q ss_pred CHHHHHHHh
Q 046918 242 DDIRIAKAI 250 (251)
Q Consensus 242 ~~~~i~~~I 250 (251)
+...++..|
T Consensus 98 ~~~~~~~~i 106 (394)
T PRK00411 98 TRYAIFSEI 106 (394)
T ss_pred CHHHHHHHH
Confidence 555554443
No 10
>PTZ00202 tuzin; Provisional
Probab=98.01 E-value=4.3e-05 Score=67.92 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=51.2
Q ss_pred cCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046918 157 LDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVC 236 (251)
Q Consensus 157 ~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~ 236 (251)
.+.. .++||+.+...+...|...+ .....++.|.|++|+|||||++.+..... ..+++.
T Consensus 259 a~~~-~FVGReaEla~Lr~VL~~~d--------------~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~v 317 (550)
T PTZ00202 259 AVIR-QFVSREAEESWVRQVLRRLD--------------TAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFV 317 (550)
T ss_pred CCcc-CCCCcHHHHHHHHHHHhccC--------------CCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEE
Confidence 3445 79999999999999887544 23356999999999999999999997432 113222
Q ss_pred eCCCCCHHHHHHHhC
Q 046918 237 VSEPFDDIRIAKAIL 251 (251)
Q Consensus 237 Vs~~~~~~~i~~~Il 251 (251)
=+. +..++++.|+
T Consensus 318 Npr--g~eElLr~LL 330 (550)
T PTZ00202 318 DVR--GTEDTLRSVV 330 (550)
T ss_pred CCC--CHHHHHHHHH
Confidence 222 5677776653
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.00 E-value=1.1e-05 Score=70.99 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=51.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccc-cCCC---ceEEEEe
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS-AHFD---KKIWVCV 237 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~-~~Fd---~~~wV~V 237 (251)
.++||+.+.++|..+|...-. ......+-|+|+.|+|||++++.++++..-. ...+ ..+||..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~-------------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR-------------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc-------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 699999999999999864220 1224568999999999999999999852211 1111 2356666
Q ss_pred CCCCCHHHHHHHh
Q 046918 238 SEPFDDIRIAKAI 250 (251)
Q Consensus 238 s~~~~~~~i~~~I 250 (251)
....+...++..|
T Consensus 83 ~~~~~~~~~~~~i 95 (365)
T TIGR02928 83 QILDTLYQVLVEL 95 (365)
T ss_pred CCCCCHHHHHHHH
Confidence 5555555555544
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.95 E-value=6.3e-06 Score=67.32 Aligned_cols=43 Identities=37% Similarity=0.451 Sum_probs=35.6
Q ss_pred eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++||+.+.++|.+++..+. ...+.|+|+.|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~-----------------~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP-----------------SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------------------SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc-----------------CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 5899999999999887644 678999999999999999999984
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.89 E-value=4e-05 Score=57.38 Aligned_cols=59 Identities=27% Similarity=0.293 Sum_probs=41.4
Q ss_pred ccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC
Q 046918 165 GREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFD 242 (251)
Q Consensus 165 G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~ 242 (251)
|++.....+...+.... ...+-|+|..|+|||||++.+++... ..-..++++..++...
T Consensus 2 ~~~~~~~~i~~~~~~~~-----------------~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 2 GQEEAIEALREALELPP-----------------PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLE 60 (151)
T ss_pred chHHHHHHHHHHHhCCC-----------------CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhh
Confidence 56677777877775433 45788999999999999999999532 2123456666655443
No 14
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=5e-05 Score=55.80 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
||.|.|+.|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 15
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.56 E-value=4.2e-05 Score=62.12 Aligned_cols=54 Identities=33% Similarity=0.473 Sum_probs=33.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHF 229 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F 229 (251)
+++|.+.-+.++.-++..... ....+.-+-.||++|+||||||+.|.+. ....|
T Consensus 25 efiGQ~~l~~~l~i~i~aa~~------------r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~ 78 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAKK------------RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF 78 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHHC------------TTS---EEEEESSTTSSHHHHHHHHHHH--CT--E
T ss_pred HccCcHHHHhhhHHHHHHHHh------------cCCCcceEEEECCCccchhHHHHHHHhc--cCCCe
Confidence 689998887776544432110 0244788889999999999999999994 44444
No 16
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.54 E-value=0.0021 Score=60.56 Aligned_cols=60 Identities=30% Similarity=0.330 Sum_probs=44.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCC---ceEEEEeC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFD---KKIWVCVS 238 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd---~~~wV~Vs 238 (251)
+++|.+.....+...+.... ...+.|+|+.|+||||||+.+++.......+. ..-|+.+.
T Consensus 155 ~iiGqs~~~~~l~~~ia~~~-----------------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASPF-----------------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred hceeCcHHHHHHHHHHhcCC-----------------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 58899998888887774322 45799999999999999999998654444432 23567664
No 17
>PRK06696 uridine kinase; Validated
Probab=97.52 E-value=0.00013 Score=59.95 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=33.6
Q ss_pred cchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 166 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
|..-.++|.+.+.... .....+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~--------------~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN--------------LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC--------------CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4455677777776533 355889999999999999999999874
No 18
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.50 E-value=0.00016 Score=62.50 Aligned_cols=47 Identities=32% Similarity=0.234 Sum_probs=33.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC----CCCHHHHHH
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE----PFDDIRIAK 248 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~----~~~~~~i~~ 248 (251)
.+.-+-+||+.|+||||||+.|-+..+... .-||..|- .-++++|+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 377788999999999999999999644433 34555553 445666654
No 19
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.48 E-value=0.00031 Score=59.01 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAI 250 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~~I 250 (251)
..++.|+|+.|+|||||++.+++..... .+ ..+|+. ....+..++++.|
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i 91 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMV 91 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHH
Confidence 5688999999999999999999964321 11 123433 3345666666554
No 20
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.46 E-value=0.00012 Score=62.78 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=38.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+..++...... ...+..+-++|+.|+|||+||+.+.+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~------------~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMR------------QEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhc------------CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999998888632200 123556779999999999999999985
No 21
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.43 E-value=6.2e-05 Score=56.00 Aligned_cols=52 Identities=25% Similarity=0.278 Sum_probs=36.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccc---cCCCceEEEEeCCCCCHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVS---AHFDKKIWVCVSEPFDDIRIAKAI 250 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~---~~Fd~~~wV~Vs~~~~~~~i~~~I 250 (251)
-+++.|+|..|+|||++++.+.++..-. ..-..++|+..+...+...+.+.|
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 58 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEI 58 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHH
Confidence 5688999999999999999999952110 002345799998887888887765
No 22
>PRK07667 uridine kinase; Provisional
Probab=97.31 E-value=0.00036 Score=55.94 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 170 QIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 170 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+.|.+.|.... ....+|+|-|.+|+||||||+.+...
T Consensus 3 ~~~~~~~~~~~~---------------~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK---------------ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC---------------CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665444 44689999999999999999999873
No 23
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.29 E-value=0.00026 Score=61.72 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=41.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
+++|.++.++++++++...... ....-+++.++|+.|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g-----------~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQG-----------LEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999764410 02346899999999999999999998853
No 24
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.28 E-value=0.00035 Score=62.74 Aligned_cols=44 Identities=39% Similarity=0.499 Sum_probs=32.7
Q ss_pred ceeccchhHHH---HHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIK---VANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..... +..++.... ...+-++|+.|+||||||+.+.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~-----------------~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGR-----------------LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence 47777766444 666664333 556778999999999999999884
No 25
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.26 E-value=0.0007 Score=58.84 Aligned_cols=71 Identities=30% Similarity=0.435 Sum_probs=58.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
.+.+|+.+...+..++.+.+ .--+++|-|+|-.|.|||.+.+.+.+... . ..+|+++-..|
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~--------------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecf 67 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNS--------------CTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECF 67 (438)
T ss_pred CccchHHHHHHHHHHhCCCC--------------cccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhc
Confidence 68999999999999887665 12355668999999999999999999642 1 35899999999
Q ss_pred CHHHHHHHhC
Q 046918 242 DDIRIAKAIL 251 (251)
Q Consensus 242 ~~~~i~~~Il 251 (251)
+.+-++..||
T Consensus 68 t~~~lle~IL 77 (438)
T KOG2543|consen 68 TYAILLEKIL 77 (438)
T ss_pred cHHHHHHHHH
Confidence 9999888875
No 26
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0027 Score=59.43 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=41.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHF 229 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F 229 (251)
+-+|.+.-+++|++.|--..-. ..-.-+++..||++|||||.|++.|.. .....|
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-----------~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-----------KKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-----------ccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 4689999999999998533200 023457999999999999999999988 344444
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.20 E-value=0.00039 Score=60.47 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=37.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+..++...... ......+-++|+.|+||||||+.+.+.
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~~------------~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKKR------------GEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHhc------------CCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 6899999999888777532100 123556779999999999999999985
No 28
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.18 E-value=0.012 Score=45.01 Aligned_cols=83 Identities=11% Similarity=0.179 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHhhchhhHH
Q 046918 2 AEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMK-ENAVRVWLDDLKHASYDMEDVL 80 (251)
Q Consensus 2 A~~~vs~~~~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~Wl~~l~~~a~d~eD~l 80 (251)
|+.+.+++++.+.+.|...+.+.......++.-+++|..+++.|..++.+.+..... +..-+.=+.++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 556666777777777666677777777888999999999999999999998885322 2222666788888888899998
Q ss_pred Hhhh
Q 046918 81 DEWN 84 (251)
Q Consensus 81 d~~~ 84 (251)
..|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8875
No 29
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00053 Score=59.95 Aligned_cols=31 Identities=42% Similarity=0.441 Sum_probs=24.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHF 229 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F 229 (251)
..+.-.-.||++|+||||||+.|-. .....|
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f 76 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF 76 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCce
Confidence 3477777999999999999999998 344444
No 30
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.11 E-value=0.00037 Score=51.41 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
|.|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998875
No 31
>PF13173 AAA_14: AAA domain
Probab=97.09 E-value=0.0006 Score=50.79 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=28.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE 239 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~ 239 (251)
-+++.|.|+.|+|||||++.++.+.. .....+++...+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~ 39 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDD 39 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCC
Confidence 46899999999999999999987533 234456665554
No 32
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.06 E-value=0.00099 Score=54.43 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=27.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
...+-|+|..|+||||||+.+++.. .......+++..+
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~ 75 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLA 75 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHH
Confidence 5678899999999999999999852 2233344555543
No 33
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.98 E-value=0.0025 Score=52.40 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=38.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAH----FDKKIWVCVSEPFDDIRIA 247 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~----Fd~~~wV~Vs~~~~~~~i~ 247 (251)
..-.++.|+|.+|+|||||+..+.-....... ...++|+.-...++..++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 44689999999999999999998643222221 3578999988888776654
No 34
>PRK06547 hypothetical protein; Provisional
Probab=96.94 E-value=0.0014 Score=51.59 Aligned_cols=26 Identities=38% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|+|.|+.|+||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999999764
No 35
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.92 E-value=0.0025 Score=51.52 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=37.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
..-+++-|+|.+|+|||+|+..+..+ .......++|+.... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 44789999999999999999987764 333456788998876 66666544
No 36
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.92 E-value=0.00091 Score=65.16 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=36.7
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++||+.+.+.+++.|.... ..-+-++|.+|+|||++|+.+...
T Consensus 180 ~~igr~~ei~~~~~~L~r~~-----------------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT-----------------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc-----------------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999997654 223359999999999999988774
No 37
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.91 E-value=0.0012 Score=57.33 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=35.7
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+..++..+. ++.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~~~g~~~~~~~L~~~~~~~~-----------------~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSPN-----------------LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HhcCCHHHHHHHHHHHhCCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence 67899988888888775433 345679999999999999998774
No 38
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.91 E-value=0.0011 Score=61.13 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=38.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+..+++|++.|...... . ...-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~g------l-----~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQG------L-----EEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHh------c-----CCCCceEEEecCCCCCchHHHHHHHH
Confidence 4799999999999999332100 0 13357999999999999999999988
No 39
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.019 Score=53.99 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=39.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+-+|.++-+++|++++--..- -++-.-+|+..+|+.|||||.+++.|..
T Consensus 412 DHYgm~dVKeRILEfiAV~kL-----------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL-----------RGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh-----------cccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 468999999999999864431 0124578999999999999999999988
No 40
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.83 E-value=0.00093 Score=44.14 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 41
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.001 Score=53.88 Aligned_cols=28 Identities=39% Similarity=0.448 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNV 224 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~ 224 (251)
..+-+|||-|.+|+||||+|+.+++...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4478999999999999999999987644
No 42
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.80 E-value=0.0016 Score=62.32 Aligned_cols=49 Identities=35% Similarity=0.489 Sum_probs=33.9
Q ss_pred ceeccchhHH---HHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC
Q 046918 162 EVRGREHLQI---KVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHF 229 (251)
Q Consensus 162 ~~~G~~~~~~---~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F 229 (251)
+++|.+.... .+.+.+..+. +.-+-++|++|+||||||+.+++. ...+|
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~-----------------~~slLL~GPpGtGKTTLA~aIA~~--~~~~f 80 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADR-----------------VGSLILYGPPGVGKTTLARIIANH--TRAHF 80 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCC-----------------CceEEEECCCCCCHHHHHHHHHHH--hcCcc
Confidence 5778776553 3444444332 556679999999999999999984 33444
No 43
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.80 E-value=0.0011 Score=49.92 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 046918 201 IISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~ 221 (251)
||-++|+.|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999884
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=96.79 E-value=0.0011 Score=60.85 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=39.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+|+..... ....+.+-|+|+.|+||||+|+.+.++
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~-------------g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLK-------------GKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhc-------------CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999865330 122678899999999999999999885
No 45
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.78 E-value=0.0013 Score=57.96 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=37.4
Q ss_pred ceeccchhHHHHHHHhcCCCCC-CCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSES-STVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|++..+++|.+.+...-.. ..-..-| -...+-+-++|+.|+|||+||+.+++.
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-----~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVG-----IEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcC-----CCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999998876422100 0000000 122455889999999999999999984
No 46
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.77 E-value=0.0013 Score=48.59 Aligned_cols=25 Identities=44% Similarity=0.498 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
...+.|+|+.|+||||+++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3578999999999999999999853
No 47
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.76 E-value=0.0015 Score=63.72 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=36.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++||+.+..++++.|.... ..-+-++|.+|+||||||+.+...
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~-----------------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR-----------------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC-----------------cCceeEECCCCCCHHHHHHHHHHH
Confidence 58999999999999997654 223459999999999999998874
No 48
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.72 E-value=0.0017 Score=62.49 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=36.7
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++||+.+.+.++..|.... ..-+-++|.+|+|||++|+.+...
T Consensus 183 ~~igr~~ei~~~~~~L~~~~-----------------~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK-----------------KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC-----------------CCceEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999887654 223458999999999999998874
No 49
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.71 E-value=0.0018 Score=50.85 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999888743
No 50
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.70 E-value=0.0014 Score=49.76 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE 239 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~ 239 (251)
++|.|+|..|+|||||++.+.+... +..+.+.+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999999532 23344444555444
No 51
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.70 E-value=0.0016 Score=51.18 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.+.|+.|+||||+|+.+++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34669999999999999999998753
No 52
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.69 E-value=0.0018 Score=63.22 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=36.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++||+.+.+++++.|.... ..-+-++|.+|+||||||+.+...
T Consensus 179 ~vigr~~ei~~~i~iL~r~~-----------------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC-----------------cCceEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999997655 233448999999999999988774
No 53
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.69 E-value=0.0023 Score=53.88 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=36.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCCCH-HHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHF-DKKIWVCVSEPFDD-IRIAKA 249 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F-d~~~wV~Vs~~~~~-~~i~~~ 249 (251)
-+-++|+|..|+|||||++.+++. ++.+| +.++++-+.+.... .+++++
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~ 119 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHE 119 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHH
Confidence 557899999999999999999994 55455 45677888876643 444443
No 54
>PHA00729 NTP-binding motif containing protein
Probab=96.68 E-value=0.0025 Score=52.12 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...|.|+|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999999998774
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.66 E-value=0.016 Score=56.34 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=36.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-++.|.+++...... + .....++.++|+.|+||||||+.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~-----~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------G-----KMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------c-----CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5789998899988876432100 0 122348999999999999999999884
No 56
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.66 E-value=0.0055 Score=52.69 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=36.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++...+.+..++.... .+.+-++|..|+||||+++.+.+.
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~-----------------~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN-----------------MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC-----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 57899988888888886533 345789999999999999999874
No 57
>PRK06893 DNA replication initiation factor; Validated
Probab=96.65 E-value=0.0016 Score=53.70 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
+.+-+||+.|+|||+|++.+++. .......+.+++++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 56889999999999999999985 32223345666664
No 58
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.62 E-value=0.0029 Score=54.56 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=37.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+...+.+..++..+. -..++-++|+.|+||||||+.+++.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~----------------~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR----------------IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC----------------CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 68999999999999886433 2567888999999999999999884
No 59
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.61 E-value=0.002 Score=53.02 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=23.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|+|.|..|+|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999988873
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=96.61 E-value=0.0053 Score=53.15 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=33.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.++-+..|..++..+. .+-+-++|+.|+||||+|+.+.+.
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~-----------------~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGN-----------------MPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence 57888877777777665433 333568999999999999998874
No 61
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.61 E-value=0.0021 Score=54.78 Aligned_cols=25 Identities=44% Similarity=0.717 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+..-+|||.|..|+||||||+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987643
No 62
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.60 E-value=0.0018 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcc
Q 046918 202 ISITGMGGIGKTTLARLIFNDNV 224 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d~~ 224 (251)
|.|+|..|+|||||.+.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67999999999999999987643
No 63
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.58 E-value=0.0021 Score=57.25 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=37.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|++..++++.+.+...-.....-. .-+-...+-|-++|++|+|||+||+.+.+.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~----~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFE----EVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHH----hcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 688999999998886632110000000 000123556889999999999999999984
No 64
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.56 E-value=0.0026 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.|+|+.|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45789999999999999999999763
No 65
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.56 E-value=0.0078 Score=49.18 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=36.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC------CceEEEEeCCCCCHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHF------DKKIWVCVSEPFDDIRIA 247 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F------d~~~wV~Vs~~~~~~~i~ 247 (251)
..-.++.|+|.+|+|||+|+..+.-.. ...- ..++|+.....++...+.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 446799999999999999999986632 1122 456888888888776654
No 66
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.0094 Score=51.45 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=50.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC----cccccCCCceEEEE-
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND----NVVSAHFDKKIWVC- 236 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d----~~v~~~Fd~~~wV~- 236 (251)
+++|.+.-++.+.+++..+. -...+-++|+.|+||||||+.++.. .....|+|...|..
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~----------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR----------------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 57898888899999886543 2457789999999999999888773 12345778777766
Q ss_pred eCCCCCHHHH
Q 046918 237 VSEPFDDIRI 246 (251)
Q Consensus 237 Vs~~~~~~~i 246 (251)
-+....+.+|
T Consensus 69 ~~~~i~v~~i 78 (313)
T PRK05564 69 NKKSIGVDDI 78 (313)
T ss_pred cCCCCCHHHH
Confidence 3455555554
No 67
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.54 E-value=0.009 Score=48.88 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=35.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRI 246 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i 246 (251)
..-.++-|+|.+|+|||+|+..+..+ ....-..++|+..- .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 44679999999999999999998874 22334567898876 5655444
No 68
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.54 E-value=0.0024 Score=49.22 Aligned_cols=24 Identities=46% Similarity=0.649 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..||.+.|..|+||||||+.+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999984
No 69
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.53 E-value=0.002 Score=47.61 Aligned_cols=21 Identities=48% Similarity=0.574 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
|-|+|+.|+||||||+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 468999999999999999995
No 70
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.0021 Score=53.97 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=38.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.++-++++.=++..... .+..+.-+-++|++|.||||||..|.+.
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~------------r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKK------------RGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHh------------cCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 678988888887666654321 0345888999999999999999999995
No 71
>PRK05439 pantothenate kinase; Provisional
Probab=96.50 E-value=0.0047 Score=53.13 Aligned_cols=26 Identities=42% Similarity=0.691 Sum_probs=23.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 196 TQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 196 ~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....-+|+|.|..|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999998876
No 72
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.49 E-value=0.002 Score=48.76 Aligned_cols=21 Identities=48% Similarity=0.771 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 046918 201 IISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~ 221 (251)
||.|.|..|+||||+|+.+-.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998775
No 73
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.48 E-value=0.013 Score=56.64 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=38.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+.+|.+.-++.|+++|...... . .....++.++|+.|+||||+++.+...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~--------~---~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV--------N---KIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc--------c---cCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999888632200 0 123458999999999999999999873
No 74
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.48 E-value=0.0014 Score=55.13 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+...-+-++|+.|+||||+|+.+.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 3456678999999999999999976
No 75
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.003 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.|+|+.|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999873
No 76
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.47 E-value=0.0027 Score=47.54 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 458999999999999999999985
No 77
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.45 E-value=0.012 Score=47.12 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 36799999999999999999988863
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.0027 Score=58.33 Aligned_cols=46 Identities=39% Similarity=0.459 Sum_probs=36.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
+++|.+.-++.|.+++.... -...+-++|+.|+||||+|+.+.+.-
T Consensus 15 dvvGq~~v~~~L~~~i~~~~----------------l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR----------------LGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68898888888888876543 24567899999999999999987753
No 79
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.43 E-value=0.0017 Score=46.87 Aligned_cols=21 Identities=52% Similarity=0.668 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997764
No 80
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.41 E-value=0.0036 Score=61.28 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=36.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++||+.+..+++..|.... ..-+-++|..|+|||+||+.+...
T Consensus 174 ~~igr~~ei~~~~~~l~r~~-----------------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC-----------------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999997654 223347999999999999988774
No 81
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.40 E-value=0.0025 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.756 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999985
No 82
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.1 Score=50.03 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=38.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++|.+.-...+.+.+.....+-. +++..+.+.-.+|+.|||||-||+.+-.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~--------dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLG--------DPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCC--------CCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 699999988888777654321111 1145678888999999999999888655
No 83
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0072 Score=53.29 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=50.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccC---CCceEEEEeC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAH---FDKKIWVCVS 238 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~---Fd~~~wV~Vs 238 (251)
.+.+|+.+.+++...|..--. | ....-+-|+|..|+|||+.++.|.+. ++.. .+ .+.|..-
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~------~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~-~~yINc~ 81 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G------ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVE-VVYINCL 81 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C------CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCc-eEEEeee
Confidence 589999999999988764331 1 11223889999999999999999995 3333 22 4556555
Q ss_pred CCCCHHHHHHHh
Q 046918 239 EPFDDIRIAKAI 250 (251)
Q Consensus 239 ~~~~~~~i~~~I 250 (251)
...+..+++..|
T Consensus 82 ~~~t~~~i~~~i 93 (366)
T COG1474 82 ELRTPYQVLSKI 93 (366)
T ss_pred eCCCHHHHHHHH
Confidence 555555655544
No 84
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.35 E-value=0.0027 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 046918 201 IISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
+|.+.|+.|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47789999999999999988764
No 85
>PRK08727 hypothetical protein; Validated
Probab=96.35 E-value=0.0076 Score=49.77 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE 239 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~ 239 (251)
.-+.|+|..|+|||+|++.+++. ..++.-..+++++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH
Confidence 45999999999999999999884 333333556776544
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.35 E-value=0.0058 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+-|+|..|+|||+||+.+++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999985
No 87
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.34 E-value=0.0048 Score=57.19 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|+|.|..|+||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 45889999999999999999999874
No 88
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.34 E-value=0.0046 Score=51.12 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCV 237 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~V 237 (251)
.--+.|+|..|+|||||+..+..+ ....|.++.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 446789999999999999999874 6678877766654
No 89
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.34 E-value=0.0031 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||.+.++.-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 579999999999999999999983
No 90
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.33 E-value=0.011 Score=53.70 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=36.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|+++..+.+...++.+. -+-+.|+.|+|||+||+.+..-
T Consensus 21 ~i~gre~vI~lll~aalag~-------------------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE-------------------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC-------------------CEEEECCCChhHHHHHHHHHHH
Confidence 58999999999988887654 4678999999999999999984
No 91
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.32 E-value=0.013 Score=49.80 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHhhchhhHHHh
Q 046918 4 VIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKR-QMKENAVRVWLDDLKHASYDMEDVLDE 82 (251)
Q Consensus 4 ~~vs~~~~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~Wl~~l~~~a~d~eD~ld~ 82 (251)
+.|..++++|-+.. ......+.-++.+++-++.+|+.+|.||+..-+. +..-+..+.++.++-..||++|-++|.
T Consensus 296 GyVdFlL~NLkdfq----~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQ----GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred cHHHHHHhhHHHHh----ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 34666777776653 2223445667999999999999999999987443 433345899999999999999999998
Q ss_pred hh
Q 046918 83 WN 84 (251)
Q Consensus 83 ~~ 84 (251)
+.
T Consensus 372 Ci 373 (402)
T PF12061_consen 372 CI 373 (402)
T ss_pred hh
Confidence 86
No 92
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.31 E-value=0.004 Score=44.86 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=20.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 93
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.30 E-value=0.0039 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++++|+++|..|+|||||.+.+...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999998774
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.0058 Score=55.73 Aligned_cols=45 Identities=33% Similarity=0.504 Sum_probs=35.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-...+...+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 15 divGq~~i~~~L~~~i~~~~----------------l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS----------------ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68998877777777665433 1356789999999999999999764
No 95
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.0035 Score=51.67 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
--.++|+|++|+|||||.+.|-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999876
No 96
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.26 E-value=0.0069 Score=45.45 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
-.+|.+.|.-|+|||||++.+.+..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998853
No 97
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.25 E-value=0.0037 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.25 E-value=0.0038 Score=50.55 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999999874
No 99
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.25 E-value=0.0035 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+|++|+|+.|+|||||+..+-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 57999999999999999999843
No 100
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.0069 Score=53.46 Aligned_cols=45 Identities=31% Similarity=0.547 Sum_probs=37.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-++.+.+.+..+. -...+-++|+.|+||||||+.+.+.
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~----------------~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR----------------IHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred hccChHHHHHHHHHHHHcCC----------------CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 68999999999888886543 2456789999999999999998764
No 101
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.24 E-value=0.0037 Score=52.20 Aligned_cols=27 Identities=41% Similarity=0.615 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....+|-++||+|.||||..|.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 557788899999999999999999863
No 102
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.23 E-value=0.0055 Score=48.00 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=31.4
Q ss_pred eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++|....+.++++.+..-. ....+|+ |+|-.|+||+.+|+.|++.
T Consensus 1 liG~s~~m~~~~~~~~~~a--------------~~~~pVl-I~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA--------------SSDLPVL-ITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT--------------TSTS-EE-EECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHh--------------CCCCCEE-EEcCCCCcHHHHHHHHHHh
Confidence 3566777777777665433 1235555 9999999999999999994
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.23 E-value=0.0092 Score=49.35 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+-|+|+.|+|||+|++.+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999984
No 104
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.0039 Score=51.18 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
--+++|+|..|+|||||++.+-.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 105
>PRK09087 hypothetical protein; Validated
Probab=96.22 E-value=0.0067 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-+.+.|||..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999875
No 106
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.21 E-value=0.0089 Score=50.16 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=35.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
+.-+++.|+|..|+|||+++.+.-. ...+++..++||+..+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 4578999999999999999988776 344558899999998765
No 107
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.21 E-value=0.015 Score=47.30 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
..-.++-|.|.+|+|||||+.++.... ...=..++|+.....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCC
Confidence 447899999999999999999987642 2222345677654444
No 108
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.20 E-value=0.0043 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 109
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.20 E-value=0.0043 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999964
No 110
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.19 E-value=0.0043 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.15 E-value=0.012 Score=58.01 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=35.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC-CCCHHHHHHH
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE-PFDDIRIAKA 249 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~-~~~~~~i~~~ 249 (251)
..+++-|.|++|.|||||+...... |+.++|+++.. +-++..++..
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 4789999999999999999998752 34689999964 4455555443
No 112
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0047 Score=48.68 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999864
No 113
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.15 E-value=0.0061 Score=58.64 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=36.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++||+.+..++++.|.... ..-+-++|..|+|||+||+.+.+.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~-----------------~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR-----------------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC-----------------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999887744 112247999999999999998863
No 114
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.12 E-value=0.0058 Score=49.41 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=26.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEE
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWV 235 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV 235 (251)
--|+.|+|++|+|||||.+-++.=+.... -.|||
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i 61 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITV 61 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEE
Confidence 56999999999999999999998544332 34555
No 115
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.12 E-value=0.0049 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
--.++|+|+.|+|||||...+..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 116
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.11 E-value=0.005 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 117
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.005 Score=50.20 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999885
No 118
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.005 Score=50.77 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.09 E-value=0.22 Score=49.00 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=37.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++|.+.-++.+.+.+...... ... +.....++-++|+.|+|||+||+.+.+
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~g------l~~--~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAG------LSD--PNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhc------ccC--CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6899998888887777532100 000 023356888999999999999999987
No 120
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.09 E-value=0.005 Score=48.66 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 459999999999999999999874
No 121
>PRK10536 hypothetical protein; Provisional
Probab=96.09 E-value=0.012 Score=49.16 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=37.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDK 231 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~ 231 (251)
.+.++......++.+|.+ ..++.+.|..|+|||+||....-+.-..+.|+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~-------------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k 106 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-------------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDR 106 (262)
T ss_pred cccCCCHHHHHHHHHHhc-------------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE
Confidence 466778888888888854 238999999999999999997775322333443
No 122
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.09 E-value=0.0052 Score=49.81 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999874
No 123
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0087 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 124
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.08 E-value=0.0045 Score=47.45 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
||.|+|..|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999986664
No 125
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0059 Score=49.58 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.. .+++|+|..|.|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 45 89999999999999999999874
No 126
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0053 Score=49.67 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999875
No 127
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.07 E-value=0.0058 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999984
No 128
>PLN02796 D-glycerate 3-kinase
Probab=96.06 E-value=0.0059 Score=53.07 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...-+|+|.|..|+|||||++.+..-
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999999874
No 129
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0054 Score=49.75 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 130
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.05 E-value=0.0052 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999874
No 131
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.05 E-value=0.0059 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.++|++|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998764
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.04 E-value=0.0052 Score=47.69 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..-|+|+|..|+|||||++.+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 455999999999999999999985
No 133
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.04 E-value=0.024 Score=48.86 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
..-.|+-|+|..|+|||||+.++.-+..... .=..++||..-..|+..++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 3478999999999999999999876432211 112689999999888877654
No 134
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.04 E-value=0.0053 Score=49.78 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999875
No 135
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.04 E-value=0.013 Score=51.60 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccc-CCCc-eEEEEeCCCC-CHHHHHHHh
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSA-HFDK-KIWVCVSEPF-DDIRIAKAI 250 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~-~Fd~-~~wV~Vs~~~-~~~~i~~~I 250 (251)
.-+.|+|..|+|||||++.+.+. +.. +=+. ++|+.|.+.. ++.++++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i 185 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSV 185 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHH
Confidence 45689999999999999998873 322 2244 4788888754 666676654
No 136
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0057 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 137
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.02 E-value=0.0056 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999999874
No 138
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.02 E-value=0.0059 Score=49.23 Aligned_cols=24 Identities=46% Similarity=0.627 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999884
No 139
>PRK06620 hypothetical protein; Validated
Probab=96.02 E-value=0.0054 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 200 IIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
..+-|||+.|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 578999999999999999988853
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.01 E-value=0.0057 Score=49.84 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999874
No 141
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.00 E-value=0.018 Score=55.70 Aligned_cols=49 Identities=29% Similarity=0.306 Sum_probs=38.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+.||+.+.++|...|...-.+ ...-.++-|+|+.|+|||+.++.|.+.
T Consensus 756 ~LPhREeEIeeLasfL~paIkg------------sgpnnvLYIyG~PGTGKTATVK~VLrE 804 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQ------------SGSNQILYISGMPGTGKTATVYSVIQL 804 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhc------------CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999888653210 122467889999999999999999875
No 142
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0053 Score=49.71 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|+|..|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999974
No 143
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.00 E-value=0.0059 Score=50.03 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999863
No 144
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0058 Score=50.56 Aligned_cols=24 Identities=42% Similarity=0.528 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999885
No 145
>PRK12377 putative replication protein; Provisional
Probab=95.99 E-value=0.0061 Score=50.84 Aligned_cols=39 Identities=31% Similarity=0.249 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE 239 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~ 239 (251)
...+-++|..|+|||+||..|.+. .....-.+++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVPD 139 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHHH
Confidence 357889999999999999999995 334444567777653
No 146
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.99 E-value=0.006 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999885
No 147
>CHL00181 cbbX CbbX; Provisional
Probab=95.99 E-value=0.015 Score=49.65 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+-++|++|+||||+|+.+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34778999999999999999763
No 148
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.97 E-value=0.0068 Score=47.02 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++|+|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999987765
No 149
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.97 E-value=0.0061 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999874
No 150
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.96 E-value=0.0064 Score=49.45 Aligned_cols=24 Identities=42% Similarity=0.426 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999975
No 151
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.0066 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..++|+++|.+|+||||++.++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999999999763
No 152
>PLN02348 phosphoribulokinase
Probab=95.95 E-value=0.0072 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+..-+|+|.|.+|+||||||+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44789999999999999999999874
No 153
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.95 E-value=0.0067 Score=48.55 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999885
No 154
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.95 E-value=0.0063 Score=49.81 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999874
No 155
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.95 E-value=0.0074 Score=45.78 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 200 IIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
+-|-++|..|+|||||+|.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357789999999999999999864
No 156
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.95 E-value=0.0059 Score=45.90 Aligned_cols=20 Identities=45% Similarity=0.595 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 046918 202 ISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~ 221 (251)
|-++|..|+|||+||+.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999998876
No 157
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.94 E-value=0.011 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 158
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.92 E-value=0.0072 Score=49.26 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999874
No 159
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.92 E-value=0.0068 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999885
No 160
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.0066 Score=50.49 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|.|||||.|.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999999988
No 161
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0067 Score=49.94 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 162
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.90 E-value=0.0069 Score=48.83 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 163
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.90 E-value=0.007 Score=49.62 Aligned_cols=24 Identities=33% Similarity=0.402 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999985
No 164
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0071 Score=49.75 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999875
No 165
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0068 Score=50.73 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 166
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.89 E-value=0.0071 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 167
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.88 E-value=0.0073 Score=49.70 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999874
No 168
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.88 E-value=0.012 Score=48.12 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+-|+|..|+|||.|++.+++.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3556789999999999999999994
No 169
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.88 E-value=0.018 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 200 IIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
+++.++|..|+|||||...+..+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 588999999999999999999874
No 170
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.87 E-value=0.0075 Score=48.85 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 171
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.87 E-value=0.011 Score=53.28 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=35.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+.-.-.... -.. .-+-....-+-++|+.|+|||+||+.|.+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~-~~~---~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPE-LYD---DIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHH-HHH---hcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 578999888888776632100000 000 000122445779999999999999999994
No 172
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.87 E-value=0.007 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|.|..|+|||||++.+..-
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999999999985
No 173
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.87 E-value=0.0069 Score=49.90 Aligned_cols=24 Identities=42% Similarity=0.396 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999874
No 174
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.86 E-value=0.031 Score=48.33 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=38.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC----CceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHF----DKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F----d~~~wV~Vs~~~~~~~i~~ 248 (251)
..-.++-|+|..|+|||+|+.++.-.......+ ..++||..-..|++.+|.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 347799999999999999999987542221111 3689999999888877654
No 175
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.011 Score=53.78 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=36.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-...|..++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 19 dvVGQe~iv~~L~~~i~~~r----------------i~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK----------------IGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 68898888888888886544 1346789999999999999999774
No 176
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.85 E-value=0.0092 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.++|+.|+||||++..+...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999999998764
No 177
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.84 E-value=0.017 Score=48.11 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=28.8
Q ss_pred hHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 169 LQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 169 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+..+++..|.... .+..+|+|.|++|+||+||.-.+-..
T Consensus 14 ~~~~ll~~l~~~~---------------g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT---------------GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT---------------T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc---------------CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4566777776533 45789999999999999999887663
No 178
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.83 E-value=0.0076 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 179
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.0077 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999975
No 180
>PRK05642 DNA replication initiation factor; Validated
Probab=95.81 E-value=0.01 Score=49.03 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=26.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
...+-|+|..|+|||.|++.+++.. ...-..+++++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHH
Confidence 4678899999999999999998742 2211234566543
No 181
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.81 E-value=0.037 Score=47.17 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCccc-----ccCCCceEEEEeCCCCCHHHHHHHhC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVV-----SAHFDKKIWVCVSEPFDDIRIAKAIL 251 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v-----~~~Fd~~~wV~Vs~~~~~~~i~~~Il 251 (251)
....-+-|||..|.||||++++.....-. ...+ .++-|.+...++...+...||
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHH
Confidence 44667999999999999999998864211 1122 567788889999999887775
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.81 E-value=0.0092 Score=48.20 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=35.5
Q ss_pred eccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046918 164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVC 236 (251)
Q Consensus 164 ~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~ 236 (251)
.++..+....++.|.. ..++.+.|++|.|||.||-..--+.-..+.|+..+++.
T Consensus 3 ~p~~~~Q~~~~~al~~-------------------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-------------------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp ---SHHHHHHHHHHHH--------------------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred cCCCHHHHHHHHHHHh-------------------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3455566677777762 45899999999999999988776644456788877764
No 183
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.81 E-value=0.0077 Score=49.80 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 184
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.80 E-value=0.015 Score=49.96 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|+|.|.+|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999997763
No 185
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.008 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 186
>PRK10908 cell division protein FtsE; Provisional
Probab=95.79 E-value=0.0082 Score=49.03 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999875
No 187
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.79 E-value=0.0086 Score=48.11 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999999999885
No 188
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.77 E-value=0.0089 Score=47.92 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999885
No 189
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.77 E-value=0.0082 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 190
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.76 E-value=0.008 Score=48.34 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 046918 201 IISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~ 220 (251)
+++|+|..|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999987
No 191
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.76 E-value=0.0074 Score=46.24 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+|++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999887654
No 192
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.76 E-value=0.0086 Score=48.48 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 193
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.76 E-value=0.0088 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-|.|+|.+|+|||||++.+.++
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 44599999999999999999874
No 194
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.012 Score=54.42 Aligned_cols=44 Identities=34% Similarity=0.483 Sum_probs=36.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-+..+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 diiGq~~~v~~L~~~i~~~r----------------l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK----------------VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 68899998988988886543 245577899999999999999876
No 195
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.75 E-value=0.0088 Score=48.30 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 196
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.74 E-value=0.019 Score=52.75 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=36.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCC-CccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESS-TVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+.-.--.. .-...+ -...+-+-++|+.|+|||++|+.+++.
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g-----l~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYD-----LKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhcc-----CCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 67889999888877653210000 000000 122455889999999999999999995
No 197
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.73 E-value=0.021 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|.++|..|+||||++.++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999988865
No 198
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0091 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999963
No 199
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.73 E-value=0.0093 Score=48.20 Aligned_cols=24 Identities=46% Similarity=0.498 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999885
No 200
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.0088 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999985
No 201
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.014 Score=52.25 Aligned_cols=44 Identities=30% Similarity=0.480 Sum_probs=35.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-++.+.+++..+. -...+-++|+.|+||||+|..+.+
T Consensus 17 eiiGq~~~~~~L~~~~~~~~----------------~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGR----------------VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hccChHHHHHHHHHHHHhCC----------------cceeEEEECCCCCCHHHHHHHHHH
Confidence 68898888888888776543 134577899999999999988765
No 202
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.72 E-value=0.009 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 203
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.72 E-value=0.0096 Score=46.69 Aligned_cols=24 Identities=46% Similarity=0.582 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999874
No 204
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.72 E-value=0.0083 Score=44.59 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccCCC
Q 046918 202 ISITGMGGIGKTTLARLIFNDNVVSAHFD 230 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d~~v~~~Fd 230 (251)
+-++|..|+||||||+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 45899999999999999988 4555663
No 205
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.71 E-value=0.0099 Score=45.22 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999885
No 206
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.71 E-value=0.016 Score=50.34 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+..+|+|.|..|+|||||+..+..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998665
No 207
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.71 E-value=0.009 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999975
No 208
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.71 E-value=0.0088 Score=49.70 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999763
No 209
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.017 Score=45.26 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 210
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.70 E-value=0.0092 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999963
No 211
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.70 E-value=0.024 Score=48.21 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+..+|.|.|..|+|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999998884
No 212
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.69 E-value=0.012 Score=49.82 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...++|.++|++|+||||++.++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998888765
No 213
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.0093 Score=49.64 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 214
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.69 E-value=0.0099 Score=46.93 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999984
No 215
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.68 E-value=0.036 Score=46.61 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHH
Q 046918 202 ISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRI 246 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i 246 (251)
+-+.|..|+|||+||+.+.+ .... ..+.++.+...+..++
T Consensus 24 vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 34899999999999999986 2211 3345555555554444
No 216
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.68 E-value=0.0094 Score=49.16 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 217
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.0095 Score=49.37 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 218
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.67 E-value=0.0096 Score=49.20 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 219
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.67 E-value=0.0099 Score=44.58 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 046918 202 ISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d~ 223 (251)
|.|+|.+|+|||||++.+.+..
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCc
Confidence 7899999999999999988763
No 220
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.67 E-value=0.018 Score=45.76 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-..+.|+|..|.|||||++.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998775
No 221
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.67 E-value=0.012 Score=57.63 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=39.7
Q ss_pred eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++||+.+.+.|...+..-. ...-.++.+.|..|+|||+|++.|..-
T Consensus 2 l~GRe~ev~~Ll~~f~~v~--------------~g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS--------------KGRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCchHhHHHHHHHHHHHHh--------------CCCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 7899999999999887654 344669999999999999999999984
No 222
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.66 E-value=0.01 Score=48.40 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNV 224 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~ 224 (251)
.-.+++++|..|+|||||.+.|..-.+
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999999543
No 223
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.66 E-value=0.011 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 224
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.66 E-value=0.0094 Score=41.17 Aligned_cols=22 Identities=50% Similarity=0.768 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999988874
No 225
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.65 E-value=0.0098 Score=49.79 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999974
No 226
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.65 E-value=0.0097 Score=49.24 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999885
No 227
>PRK08116 hypothetical protein; Validated
Probab=95.64 E-value=0.0098 Score=50.22 Aligned_cols=36 Identities=31% Similarity=0.244 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 201 IISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
.+-++|..|+|||.||..|++. ...+--.+++++++
T Consensus 116 gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~~ 151 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNFP 151 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 4789999999999999999995 33333345666654
No 228
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.64 E-value=0.01 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999875
No 229
>PLN02200 adenylate kinase family protein
Probab=95.64 E-value=0.012 Score=48.64 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|.|.|+.|+||||+|+.+..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 230
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.64 E-value=0.01 Score=48.15 Aligned_cols=24 Identities=42% Similarity=0.503 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999999985
No 231
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.64 E-value=0.011 Score=46.82 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999885
No 232
>PRK13946 shikimate kinase; Provisional
Probab=95.64 E-value=0.009 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+.|.++|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999774
No 233
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.64 E-value=0.01 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 234
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.011 Score=46.25 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999884
No 235
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.63 E-value=0.011 Score=46.13 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999985
No 236
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.63 E-value=0.01 Score=49.37 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 237
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.62 E-value=0.01 Score=49.06 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 238
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.013 Score=45.87 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....||...|.+|.||||+|..++..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999873
No 239
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.62 E-value=0.0097 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 459999999999999999999874
No 240
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.01 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999975
No 241
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.62 E-value=0.013 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...-||+|.|..|+|||||++.+..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999999965
No 242
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.61 E-value=0.011 Score=47.53 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999874
No 243
>PLN02924 thymidylate kinase
Probab=95.61 E-value=0.032 Score=45.68 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
..-..|.|-|..|+||||+++.+.+.-
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999999853
No 244
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.61 E-value=0.034 Score=48.61 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=38.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccc---c-CCCceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVS---A-HFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~---~-~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
..-+++=|+|..|+|||+|+..++-..... . .-..++||.--.+|++.+|.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ 179 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP 179 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH
Confidence 446788899999999999999875322221 1 124678999999898887765
No 245
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.60 E-value=0.01 Score=50.05 Aligned_cols=24 Identities=54% Similarity=0.636 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 246
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.011 Score=47.81 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 247
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.01 Score=49.37 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999964
No 248
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.59 E-value=0.029 Score=48.45 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=37.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
..-+++-|+|..|+|||+|+..+.-...... .=..++||..-..|++.+|.+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~ 149 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA 149 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH
Confidence 4478999999999999999988653222211 113678999988888887754
No 249
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.017 Score=48.63 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999874
No 250
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.59 E-value=0.011 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999863
No 251
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.01 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999885
No 252
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.01 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 253
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.59 E-value=0.016 Score=50.75 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=34.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++|.+.-+..|+..+.+.. ++-+-|.|..|+||||+|+.+++
T Consensus 18 ~ivGq~~~k~al~~~~~~p~-----------------~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPK-----------------IGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred HHhChHHHHHHHHHhccCCC-----------------CCeEEEEcCCCCCHHHHHHHHHH
Confidence 68999987877777665543 55556999999999999999965
No 254
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.58 E-value=0.011 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999874
No 255
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.58 E-value=0.01 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999874
No 256
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.011 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
--.|+|+|..|.|||||.+.+..
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999987
No 257
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.58 E-value=0.011 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999985
No 258
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.58 E-value=0.011 Score=49.44 Aligned_cols=24 Identities=42% Similarity=0.408 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999885
No 259
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.58 E-value=0.011 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999874
No 260
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.57 E-value=0.012 Score=46.44 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|.|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999885
No 261
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.57 E-value=0.011 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
+.+++|+|+.|.|||||.+.|.
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999976
No 262
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.56 E-value=0.018 Score=51.38 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=36.3
Q ss_pred ceeccchhHHHHHHHhcCCCCC-CCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSES-STVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+.-.-.. ..-...| -...+-+-++|+.|+|||+||+.+.+.
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~G-----l~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIG-----IDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcC-----CCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 6889998888887765311000 0000000 123567889999999999999999984
No 263
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.013 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.++.++|+.|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999998874
No 264
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.56 E-value=0.025 Score=43.46 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNV 224 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~ 224 (251)
-..|+++|+.|+||+||...+..+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 35678999999999999999988643
No 265
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.011 Score=49.90 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999874
No 266
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.56 E-value=0.011 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-|.|+|.+|+|||||+..+..+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45789999999999999988653
No 267
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.56 E-value=0.011 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999999874
No 268
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.56 E-value=0.0099 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-.+.|+|+|..|+|||||++.+.+.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45889999999999999999998874
No 269
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.55 E-value=0.019 Score=53.35 Aligned_cols=44 Identities=32% Similarity=0.463 Sum_probs=34.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+...+.... ..-+-|+|..|+||||+|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~-----------------~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN-----------------PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence 58999988888887765433 234568999999999999999863
No 270
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.011 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999864
No 271
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.011 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 272
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.55 E-value=0.012 Score=48.12 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999874
No 273
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.55 E-value=0.011 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 569999999999999999999975
No 274
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.54 E-value=0.012 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 275
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.012 Score=48.50 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 276
>PRK07429 phosphoribulokinase; Provisional
Probab=95.53 E-value=0.014 Score=50.62 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...-+|+|.|..|+|||||++.+..-
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 45789999999999999999998865
No 277
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.53 E-value=0.012 Score=48.23 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|.|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 278
>PRK13948 shikimate kinase; Provisional
Probab=95.52 E-value=0.014 Score=46.37 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+.|.++||.|+||||+++.+.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998763
No 279
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.52 E-value=0.012 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 459999999999999999999863
No 280
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.51 E-value=0.011 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 281
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.50 E-value=0.018 Score=53.68 Aligned_cols=44 Identities=25% Similarity=0.476 Sum_probs=36.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-++.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 dIIGQe~iv~~L~~aI~~~r----------------l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK----------------LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHH
Confidence 68899999999988886543 135678999999999999998765
No 282
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.012 Score=48.40 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999974
No 283
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.012 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 284
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.49 E-value=0.012 Score=47.80 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.++.-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 459999999999999999999975
No 285
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.012 Score=48.94 Aligned_cols=23 Identities=48% Similarity=0.531 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999995
No 286
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.48 E-value=0.016 Score=45.92 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+|.|.|..|+||||||+.+...
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999874
No 287
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.48 E-value=0.021 Score=49.86 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=34.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++|.+.-+..++-.+.+.. ..-+.|.|..|+|||||++.+..
T Consensus 5 ~ivgq~~~~~al~~~~~~~~-----------------~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPK-----------------IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccHHHHHHHHHHHhcCCC-----------------CCeEEEEcCCCCCHHHHHHHHHH
Confidence 57898888888766666533 44566999999999999999964
No 288
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.48 E-value=0.021 Score=46.45 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999874
No 289
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.48 E-value=0.012 Score=49.15 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999875
No 290
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.019 Score=52.46 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=34.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-++.+.+.+..+. -..-+-++|+.|+||||+|+.+..
T Consensus 14 dliGQe~vv~~L~~a~~~~r----------------i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK----------------IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCccHHHHHHHHHH
Confidence 68999888888887776543 134788999999999999988754
No 291
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.017 Score=55.98 Aligned_cols=45 Identities=33% Similarity=0.478 Sum_probs=37.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-++.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 17 dIIGQe~Iv~~LknaI~~~r----------------l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR----------------LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC----------------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999998886544 1445679999999999999998875
No 292
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.012 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 458999999999999999999884
No 293
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.47 E-value=0.033 Score=48.17 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=36.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIA 247 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~ 247 (251)
..-.++-|+|..|+|||||+..++-...... .-..++|+.--..|+..+|.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~ 148 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL 148 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH
Confidence 4478999999999999999998875322211 12356898888877776653
No 294
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.022 Score=53.67 Aligned_cols=44 Identities=34% Similarity=0.550 Sum_probs=36.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-.+.|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 16 dVIGQe~vv~~L~~aI~~gr----------------l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR----------------LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999887544 246778999999999999998765
No 295
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.014 Score=47.26 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
--|.+|+|+.|.|||||.+.++.+
T Consensus 27 Gev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhhCc
Confidence 459999999999999999999986
No 296
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.012 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999975
No 297
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.013 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 459999999999999999999863
No 298
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.46 E-value=0.013 Score=49.21 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 299
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.45 E-value=0.013 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+...
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999764
No 300
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.45 E-value=0.012 Score=48.94 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 33 GEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 459999999999999999999873
No 301
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.012 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Confidence 459999999999999999999974
No 302
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.45 E-value=0.013 Score=48.85 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
..+.+|+|..|.|||||+..|+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~ 46 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAIC 46 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999997
No 303
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.012 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999885
No 304
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.45 E-value=0.034 Score=48.62 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=38.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
..-.++-|+|..|+|||+|+..++-...... .=..++||..-..|++.+|.+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q 176 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ 176 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH
Confidence 4477899999999999999998775322211 113689999999988887654
No 305
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.44 E-value=0.013 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999885
No 306
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.44 E-value=0.017 Score=45.82 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+.+.-|+|+|.+|+|||||.+.+.+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45778999999999999999999985
No 307
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.44 E-value=0.013 Score=47.60 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999885
No 308
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.44 E-value=0.032 Score=49.80 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=35.7
Q ss_pred ceeccchhHHHHHHHhcCC-CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSG-SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.++.++.+.-.+... ......+ .... ....+-|-++|+.|+||||||+.+...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~-~~~~---e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNE-ELKD---EVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhcccc-cccc---ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4788888888876555532 0000000 0000 122467889999999999999999884
No 309
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.43 E-value=0.013 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 310
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.43 E-value=0.013 Score=48.97 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 311
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.013 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|+|||||++.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999984
No 312
>PF13245 AAA_19: Part of AAA domain
Probab=95.43 E-value=0.024 Score=38.19 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=17.7
Q ss_pred CEEEEEEcCCCCcHH-HHHHHHhc
Q 046918 199 PIIISITGMGGIGKT-TLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKT-TLa~~v~~ 221 (251)
-++..|.|.+|.||| |+++.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999 56665555
No 313
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.023 Score=46.53 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 314
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.013 Score=48.19 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999774
No 315
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=95.42 E-value=0.013 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
-.+++|+|..|.|||||++.|.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhe
Confidence 3489999999999999999986
No 316
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.42 E-value=0.012 Score=49.05 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.++++||-.|+|||||++.|-.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc
Confidence 56899999999999999999988
No 317
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.013 Score=49.57 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 46 Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 46 KKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999985
No 318
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.013 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 36 NQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999984
No 319
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.013 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 46 Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 46 NKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999874
No 320
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.41 E-value=0.024 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 321
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.014 Score=49.62 Aligned_cols=24 Identities=42% Similarity=0.418 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999974
No 322
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.40 E-value=0.013 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999985
No 323
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.014 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 31 NEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999965
No 324
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.014 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999864
No 325
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.39 E-value=0.036 Score=48.01 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD 243 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~ 243 (251)
+.-+++-|+|++|+||||||..++-. ..+.-..++||..-..++.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 44678899999999999999997763 2333456677776665554
No 326
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.014 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 327
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.38 E-value=0.014 Score=47.08 Aligned_cols=22 Identities=41% Similarity=0.244 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++.|.|+.|.|||||++.|..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999875
No 328
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.38 E-value=0.014 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999875
No 329
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.014 Score=48.90 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 33 NKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999863
No 330
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.37 E-value=0.014 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999885
No 331
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.36 E-value=0.029 Score=50.23 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+-|+|..|+|||+|++.+++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999995
No 332
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.36 E-value=0.014 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 27 GRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999874
No 333
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.36 E-value=0.014 Score=47.13 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 046918 200 IIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.+++|+|..|.|||||...|+
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 499999999999999999994
No 334
>PLN02165 adenylate isopentenyltransferase
Probab=95.36 E-value=0.016 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+|.|+|+.|+||||||..+...
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 559999999999999999988774
No 335
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.36 E-value=0.013 Score=51.07 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-++++.|++|+|||||.+.|.-
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999977
No 336
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.014 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.|..-
T Consensus 33 Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 33 GEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc
Confidence 458999999999999999999874
No 337
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.015 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 458999999999999999999864
No 338
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.014 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 30 NKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999863
No 339
>PRK09183 transposase/IS protein; Provisional
Probab=95.34 E-value=0.013 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+.|+|+.|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999999999999764
No 340
>PRK14974 cell division protein FtsY; Provisional
Probab=95.34 E-value=0.016 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|.++|+.|+||||++.++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999997777765
No 341
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.014 Score=51.09 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999874
No 342
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.33 E-value=0.015 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 343
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.32 E-value=0.026 Score=49.59 Aligned_cols=26 Identities=35% Similarity=0.666 Sum_probs=24.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+.+++|||+.|+|||.+|+.|++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 55889999999999999999999995
No 344
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.014 Score=49.08 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 33 GHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 459999999999999999999885
No 345
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.32 E-value=0.041 Score=40.76 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=34.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+--.+.+++.+.+--.+. .....-|++..|..|+|||.+++.|.++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~----------~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP----------NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC----------CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 57787655555555554321000 0366889999999999999987777654
No 346
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.32 E-value=0.015 Score=45.42 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
---|+|.|+.|.||+||.+.|++
T Consensus 29 Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHh
Confidence 34689999999999999999998
No 347
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.32 E-value=0.041 Score=47.59 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD 243 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~ 243 (251)
+.-+++-|+|+.|+||||||..+... ..+.=..++||..-+.++.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH
Confidence 44679999999999999998886663 2233345567765554443
No 348
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.065 Score=45.40 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
+.-+|+=|+|+.|.||||||-+++-. ++..-..++||.--+.|++..+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH
Confidence 55789999999999999999998874 555555889999999999887653
No 349
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.29 E-value=0.031 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...|.++|.+|+|||||...+...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC
Confidence 346779999999999999999764
No 350
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.29 E-value=0.016 Score=48.77 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 37 GETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999885
No 351
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.017 Score=44.36 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999985
No 352
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.016 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 29 NSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999985
No 353
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.015 Score=47.96 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999874
No 354
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.27 E-value=0.018 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.|++++|+.|+||||++.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999999874
No 355
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.26 E-value=0.016 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 28 GEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999874
No 356
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.023 Score=52.43 Aligned_cols=45 Identities=31% Similarity=0.390 Sum_probs=37.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|-+.-++.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 17 divGq~~v~~~L~~~~~~~~----------------l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY----------------LHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC----------------CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999996644 1346778999999999999887763
No 357
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.26 E-value=0.016 Score=47.96 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999974
No 358
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.26 E-value=0.016 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 30 GECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 359
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.016 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 29 RQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 459999999999999999999763
No 360
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.25 E-value=0.023 Score=36.59 Aligned_cols=20 Identities=45% Similarity=0.547 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 046918 201 IISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~ 220 (251)
+..|.|..|+|||||.-.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999997654
No 361
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.25 E-value=0.022 Score=44.76 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....-|.|+|..|+|||||...+.+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~ 42 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRK 42 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 446688999999999999999998863
No 362
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.25 E-value=0.025 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-++..|.|.+|+||||+++.+..-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH
Confidence 357888999999999999998773
No 363
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.25 E-value=0.016 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 39 Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 39 GQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 364
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.24 E-value=0.017 Score=47.79 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999874
No 365
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.24 E-value=0.015 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
..+.+|+|+.|.|||||++.|+
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999997
No 366
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.027 Score=52.92 Aligned_cols=42 Identities=36% Similarity=0.553 Sum_probs=34.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHH
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v 219 (251)
+++|-+.-+..|.+++..+. -...+-++|..|+||||+|+.+
T Consensus 17 dviGQe~vv~~L~~~l~~~r----------------l~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR----------------LHHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHH
Confidence 68898888888888887644 2456789999999999999998
No 367
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.019 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..++.++|++|+||||++.++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998763
No 368
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.23 E-value=0.016 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 65 Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 65 KYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999986
No 369
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.017 Score=49.29 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 33 GSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999975
No 370
>PRK08181 transposase; Validated
Probab=95.23 E-value=0.012 Score=49.63 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046918 201 IISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCV 237 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~V 237 (251)
-+-++|+.|+|||.||..+.+. .....-.++++++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~ 142 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT 142 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH
Confidence 4889999999999999999884 3333334566665
No 371
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.017 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.++..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 33 GKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999985
No 372
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.23 E-value=0.048 Score=45.74 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=38.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccC---C-CceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAH---F-DKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~---F-d~~~wV~Vs~~~~~~~i~~ 248 (251)
..-.|.=|+|.+|+|||.|+-.+.-+..+... . ..++|+.-...|+..++.+
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~ 91 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ 91 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence 34679999999999999999877654332221 1 2578999999999888754
No 373
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.22 E-value=0.016 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||.+.+..-
T Consensus 22 Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 22 GEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 459999999999999999998864
No 374
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.22 E-value=0.017 Score=47.47 Aligned_cols=25 Identities=44% Similarity=0.586 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..-.+.+|+|..|+|||||.+.|-.
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~G 56 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILG 56 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhc
Confidence 3456999999999999999999987
No 375
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.22 E-value=0.017 Score=48.96 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999975
No 376
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.023 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++++|..|+||||++.++..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999997765
No 377
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.22 E-value=0.017 Score=48.88 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999985
No 378
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.21 E-value=0.028 Score=46.80 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=27.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
...+-++|.+|+|||+||..|.+.. ...-..+++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~~ 136 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITVA 136 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEHH
Confidence 4478899999999999999999953 2222345566553
No 379
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.21 E-value=0.017 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 29 GEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999885
No 380
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.21 E-value=0.016 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 381
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.21 E-value=0.017 Score=48.98 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 47 Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 47 RAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 382
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.21 E-value=0.017 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 38 Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 38 NSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 383
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.028 Score=49.59 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=37.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+...+.+.+.+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 18 ~iig~~~~~~~l~~~i~~~~----------------~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH----------------LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999998886543 2458889999999999999998764
No 384
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.017 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 469999999999999999999874
No 385
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.20 E-value=0.018 Score=46.50 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|.|..|.|||||++.+..-
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999763
No 386
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.20 E-value=0.43 Score=46.81 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=36.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++|.+.-++.+.+.+....... + .+......+-++|+.|+|||+||+.+.+
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl------~--~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGL------K--NPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcc------c--CCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 68999998888888775322000 0 0023456777899999999999988765
No 387
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.028 Score=52.90 Aligned_cols=44 Identities=32% Similarity=0.473 Sum_probs=36.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-++.|.+++..+. -...+-++|..|+||||||+.+.+
T Consensus 17 dVIGQe~vv~~L~~al~~gR----------------LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR----------------LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC----------------CceEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999887654 245678899999999999998765
No 388
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.017 Score=48.05 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 30 GTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 389
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.19 E-value=0.017 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 51 Ge~~~I~G~nGsGKSTLl~~laG 73 (272)
T PRK14236 51 NRVTAFIGPSGCGKSTLLRCFNR 73 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45999999999999999999964
No 390
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.017 Score=50.22 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 41 Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 41 GKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 458999999999999999999885
No 391
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.017 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999974
No 392
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.017 Score=45.26 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
--|++|||-.|+|||||.+.+...
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcc
Confidence 349999999999999999998774
No 393
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.017 Score=50.81 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 394
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.018 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~I~G~nGsGKSTLl~~i~G 53 (251)
T PRK14244 31 REVTAFIGPSGCGKSTFLRCFNR 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999975
No 395
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.17 E-value=0.026 Score=47.85 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 170 QIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 170 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
-.+++..|.... .+..||+|.|.+|+||+||.-.+-...
T Consensus 37 a~~ll~~l~p~t---------------G~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRT---------------GNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcC---------------CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 356666665543 568899999999999999998877644
No 396
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.16 E-value=0.032 Score=52.64 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=38.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|-+...+++..+|....-+ ...-.++.++|+.|+||||+++.+.+.
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~------------~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLE------------NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccc------------cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6889898889999888654310 122468999999999999999999985
No 397
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.15 E-value=0.026 Score=53.51 Aligned_cols=44 Identities=36% Similarity=0.574 Sum_probs=36.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-+..|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 dIIGQe~vv~~L~~ai~~~r----------------l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR----------------LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCcHHHHHHHHHH
Confidence 68999999999999887544 245788999999999999998766
No 398
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.15 E-value=0.016 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
--+++|||-.|+||||||+.+-.
T Consensus 317 GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999987
No 399
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.14 E-value=0.036 Score=48.46 Aligned_cols=44 Identities=30% Similarity=0.520 Sum_probs=36.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~----------------~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR----------------IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999998886543 245778999999999999987754
No 400
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.14 E-value=0.017 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 42 Ge~~~ivG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 42 GETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 458999999999999999999874
No 401
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.14 E-value=0.073 Score=50.97 Aligned_cols=44 Identities=34% Similarity=0.513 Sum_probs=35.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR----------------L~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR----------------LHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC----------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999886543 134556999999999999987665
No 402
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.13 E-value=0.018 Score=50.69 Aligned_cols=24 Identities=46% Similarity=0.495 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999875
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=95.13 E-value=0.081 Score=47.71 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=19.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|.++|..|+||||.+-++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999996665544
No 404
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.13 E-value=0.03 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..++|+|+|..|+|||||+..+...
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~ 228 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPE 228 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998874
No 405
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.11 E-value=0.021 Score=46.32 Aligned_cols=49 Identities=33% Similarity=0.233 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc-----cccCCCceEEEEeCCCCCHHHHHHH
Q 046918 201 IISITGMGGIGKTTLARLIFNDNV-----VSAHFDKKIWVCVSEPFDDIRIAKA 249 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d~~-----v~~~Fd~~~wV~Vs~~~~~~~i~~~ 249 (251)
+..|+|++|.||||++..+-.... ....-+..+-++...+..+..++..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~ 72 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILER 72 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHH
Confidence 788899999999976666555320 1233455566666555555555544
No 406
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.11 E-value=0.018 Score=48.49 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 38 Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 38 GETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 407
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.11 E-value=0.019 Score=47.65 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-..+.++|++|+||||+.+.|+.
T Consensus 27 gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45788999999999999999988
No 408
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.11 E-value=0.019 Score=48.82 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 63 Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 409
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.019 Score=49.76 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 52 Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999984
No 410
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.10 E-value=0.019 Score=46.10 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999885
No 411
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.10 E-value=0.04 Score=50.10 Aligned_cols=37 Identities=30% Similarity=0.255 Sum_probs=26.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCC-C-ceEEEEe
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHF-D-KKIWVCV 237 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F-d-~~~wV~V 237 (251)
..-+-|+|..|+|||+|++.+.+. +.+.+ . .+++++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS 186 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH
Confidence 456889999999999999999994 44443 2 2345544
No 412
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.09 E-value=0.087 Score=43.55 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHH-hcCcccccCCCceEEEEeCCC
Q 046918 197 QLPIIISITGMGGIGKTTLARLI-FNDNVVSAHFDKKIWVCVSEP 240 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v-~~d~~v~~~Fd~~~wV~Vs~~ 240 (251)
..-+++-|.|.+|+|||||+.++ |+- . +.-+.++||+...+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~-~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG--L-QMGEPGIYVALEEH 60 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--H-HcCCcEEEEEeeCC
Confidence 44789999999999999999875 442 2 22356788887653
No 413
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.019 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 33 SKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 569999999999999999999885
No 414
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.017 Score=44.02 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....-|-|.|.+|+|||||+..|..-
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 34667889999999999999998653
No 415
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.019 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 33 GEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999874
No 416
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.027 Score=51.39 Aligned_cols=56 Identities=27% Similarity=0.400 Sum_probs=39.1
Q ss_pred ceeccc---hhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCccc
Q 046918 162 EVRGRE---HLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV 225 (251)
Q Consensus 162 ~~~G~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v 225 (251)
++-|.+ .+.++|+++|.++.. ..+.+ .+=++-|-++|+.|.|||.||+.|.....|
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~k--ftrLG------GKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTK--FTRLG------GKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHH--hhhcc------CcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 455665 466888998887641 11111 233667889999999999999999987644
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.07 E-value=0.017 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-+++.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999998887655
No 418
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.025 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.-.+|+|+|.+|+||||++.++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999988765
No 419
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.06 E-value=0.068 Score=44.00 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
+.-+++.|+|..|+|||||+.++... ..+. =..++|++..+++
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~~ 65 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENTS 65 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCCH
Confidence 44779999999999999999998442 1222 1356788876654
No 420
>PTZ00035 Rad51 protein; Provisional
Probab=95.06 E-value=0.08 Score=46.25 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=35.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccc---c-CCCceEEEEeCCCCCHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVS---A-HFDKKIWVCVSEPFDDIRIA 247 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~---~-~Fd~~~wV~Vs~~~~~~~i~ 247 (251)
..-.++-|+|..|+|||||+..+.-..... . .=..++||.--..|+..+|.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~ 170 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV 170 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH
Confidence 457899999999999999999887532211 0 11345688877777776653
No 421
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.05 E-value=0.03 Score=46.65 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=37.9
Q ss_pred ceeccchhH---HHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918 162 EVRGREHLQ---IKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV 224 (251)
Q Consensus 162 ~~~G~~~~~---~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~ 224 (251)
+++|.+..+ .-|++.|.+.+. =+.-..+-|-.+|+.|.|||.+|+.+.|..+
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~-----------Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPER-----------FGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHH-----------hcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 688987665 345666655431 0124478889999999999999999999653
No 422
>PRK06526 transposase; Provisional
Probab=95.05 E-value=0.016 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.146 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..-+-++|++|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345789999999999999998774
No 423
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.04 E-value=0.022 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 200 IIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
--|.|+|.+|+|||||.+.+.++.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~ 27 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE 27 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 347799999999999999987653
No 424
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.03 E-value=0.029 Score=48.78 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=41.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++|.+...+++++.+..... ..+..-+|+-++|+.|.|||||+..+.+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~-----------g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQ-----------GLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHh-----------ccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999876541 1135578999999999999999999887
No 425
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.02 E-value=0.021 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 42 Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 42 KQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 459999999999999999999864
No 426
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.02 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 32 Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 32 GSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 458999999999999999999975
No 427
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.02 Score=48.55 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 33 GEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999875
No 428
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.03 Score=52.74 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=34.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-+..+.+.+..+. -..-+-++|+.|+||||+|+.+.+
T Consensus 17 eivGQe~i~~~L~~~i~~~r----------------i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR----------------VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCCHHHHHHHHHH
Confidence 68898888888888876543 234588999999999999977654
No 429
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.02 E-value=0.02 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999874
No 430
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.02 E-value=0.034 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 431
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.01 E-value=0.022 Score=45.20 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=23.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCccc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVV 225 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v 225 (251)
-..+-++|++|.|||||.+.||..++-
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 457889999999999999999997543
No 432
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.01 E-value=0.017 Score=50.15 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE 239 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~ 239 (251)
.-+-++|..|+|||+||..|.+.. ...--.+++++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHHH
Confidence 568999999999999999999953 22222456776644
No 433
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.00 E-value=0.021 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999884
No 434
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.00 E-value=0.027 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+-+-++|+.|+|||+||+.+.+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 44778999999999999999885
No 435
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.00 E-value=0.022 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|.+|+|||||+..+.+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998875
No 436
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.99 E-value=0.024 Score=48.26 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 046918 201 IISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-+-++|+.|+||||+|+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 477999999999999966655
No 437
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=94.99 E-value=0.021 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.|..-
T Consensus 47 Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 47 GETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999874
No 438
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.021 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 32 Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 32 GEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999875
No 439
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.98 E-value=0.022 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|.|..|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 558999999999999999999885
No 440
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.96 E-value=0.021 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 65 Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 65 NQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999853
No 441
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.95 E-value=0.036 Score=53.55 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=37.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+.+.+...... -. .+.....++-++|+.|+|||+||+.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g------~~--~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAG------LG--NPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcC------CC--CCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 5889888888888777632100 00 00234667899999999999999999873
No 442
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.95 E-value=0.022 Score=41.74 Aligned_cols=21 Identities=57% Similarity=0.865 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
|.+.|.||+||||++..+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998774
No 443
>PRK06921 hypothetical protein; Provisional
Probab=94.94 E-value=0.028 Score=47.42 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=28.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccC-CCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAH-FDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~-Fd~~~wV~Vs 238 (251)
..-+-++|..|+|||+||..|.+. +.+. --.+++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV 155 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH
Confidence 457889999999999999999995 3332 2345676653
No 444
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.022 Score=47.41 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 30 RQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 445
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.93 E-value=0.036 Score=51.00 Aligned_cols=45 Identities=33% Similarity=0.462 Sum_probs=35.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-+..+.+.+..+. -..-+-++|+.|+||||+|+.+.+.
T Consensus 22 dliGq~~vv~~L~~ai~~~r----------------i~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR----------------LAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 57899888888887665433 2456789999999999999999774
No 446
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.92 E-value=0.022 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 459999999999999999999864
No 447
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.92 E-value=0.044 Score=49.52 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.++|..|+||||++.++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999998764
No 448
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.92 E-value=0.022 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 33 GSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999874
No 449
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.035 Score=51.91 Aligned_cols=45 Identities=31% Similarity=0.464 Sum_probs=36.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-.+.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 14 eivGq~~i~~~L~~~i~~~r----------------~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR----------------INHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68999998999999887543 2446789999999999999988763
No 450
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=94.90 E-value=0.023 Score=46.27 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 31 G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 451
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.90 E-value=0.025 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 452
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.89 E-value=0.033 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+|.|.|+.|+||||+++.+.+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998776
No 453
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.88 E-value=0.025 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+.++.|+.|.|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999984
No 454
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.88 E-value=0.023 Score=49.38 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-..+.++|+.|+|||||.+.|.-=
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999873
No 455
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=94.87 E-value=0.039 Score=42.55 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 200 IIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
+-|.++|..|+|||||.+.+++..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 358999999999999999998864
No 456
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.025 Score=46.50 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999886
No 457
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.043 Score=50.89 Aligned_cols=44 Identities=39% Similarity=0.530 Sum_probs=35.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+.-++.+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 divGq~~v~~~L~~~i~~~~----------------~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR----------------LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 68899998999988887544 134567899999999999998855
No 458
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=94.86 E-value=0.023 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=18.7
Q ss_pred CEEEEEEcCCCCcHHHHHH-HHhc
Q 046918 199 PIIISITGMGGIGKTTLAR-LIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~-~v~~ 221 (251)
.--|+|+|.+|+|||||++ .++.
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~ 32 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTG 32 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999995 5554
No 459
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.85 E-value=0.037 Score=52.00 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=37.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+.+..+. -..-+-++|+.|+||||+|+.+.+.
T Consensus 25 dliGq~~~v~~L~~~~~~gr----------------i~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR----------------IAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999887544 2446778999999999999998663
No 460
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.023 Score=48.75 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=29.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccc--cCCCceEEEEe
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVS--AHFDKKIWVCV 237 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~--~~Fd~~~wV~V 237 (251)
-++|-++|++|.|||+|.|..+..-.++ ..+.....+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 5789999999999999999999976554 34544455544
No 461
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.84 E-value=0.084 Score=45.49 Aligned_cols=41 Identities=17% Similarity=0.359 Sum_probs=32.4
Q ss_pred hHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 169 LQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 169 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
-.+.+.+.|.+.+ .....+|+|.|.=|+||||+.+.+.+..
T Consensus 4 ~a~~la~~I~~~~--------------~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 4 YAKALAEIIKNPD--------------SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred HHHHHHHHHhccC--------------CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456677676554 3568999999999999999999998853
No 462
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.83 E-value=0.03 Score=43.18 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...-|.++|.+|+|||||.+.+..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Confidence 367899999999999999999864
No 463
>PLN02840 tRNA dimethylallyltransferase
Probab=94.83 E-value=0.036 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.|.|+.|+||||||+.+...
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~ 44 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKR 44 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999999998875
No 464
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.025 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (261)
T PRK14263 34 NEITGFIGPSGCGKSTVLRSLNR 56 (261)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999999964
No 465
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.83 E-value=0.034 Score=53.68 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=35.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..++.|.+++...-.....-... +-...+-|-++|+.|+||||||+.+.+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~----gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHL----GIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhc----CCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 57899988888877763211000000000 0122456779999999999999999884
No 466
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.83 E-value=0.035 Score=45.59 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=33.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|-++..+.+--+-.+++ .+-+-|-||+|+||||-+....+
T Consensus 28 dIVGNe~tv~rl~via~~gn-----------------mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGN-----------------MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCC-----------------CCceEeeCCCCCchhhHHHHHHH
Confidence 68999988888876665544 77788999999999996665443
No 467
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.82 E-value=0.025 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 458999999999999999999874
No 468
>PRK09354 recA recombinase A; Provisional
Probab=94.82 E-value=0.072 Score=46.59 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD 243 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~ 243 (251)
+.-+++=|+|+.|+|||||+-++... ....=..++||..-..++.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH
Confidence 44679999999999999999987763 2333356678777666655
No 469
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.82 E-value=0.046 Score=46.05 Aligned_cols=23 Identities=39% Similarity=0.353 Sum_probs=19.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+|.|.|..|.||||+++.+.+
T Consensus 80 ~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 46899999999999999997643
No 470
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.82 E-value=0.024 Score=49.80 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.|..-
T Consensus 28 Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 471
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.80 E-value=0.025 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.|..-
T Consensus 32 Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCC
Confidence 458999999999999999999874
No 472
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.80 E-value=0.026 Score=47.85 Aligned_cols=24 Identities=46% Similarity=0.458 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 33 GEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999864
No 473
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.80 E-value=0.026 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++++|+.|.|||||.+.+..-
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999999884
No 474
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.79 E-value=0.023 Score=52.68 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-..++|+|..|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999763
No 475
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.79 E-value=0.026 Score=43.91 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..|.++|.+|+|||||+..+...
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccC
Confidence 34669999999999999988654
No 476
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.78 E-value=0.026 Score=47.94 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||.+.+..-
T Consensus 36 Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 36 GEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 477
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=94.77 E-value=0.024 Score=52.19 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 30 Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 30 GRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999874
No 478
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=94.76 E-value=0.036 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.++.-
T Consensus 274 Ge~~~l~G~nGsGKSTLl~~l~Gl 297 (491)
T PRK10982 274 GEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred CcEEEEecCCCCCHHHHHHHHcCC
Confidence 458999999999999999999874
No 479
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.74 E-value=0.027 Score=51.00 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=26.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccC-CC-ceEEEEe
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAH-FD-KKIWVCV 237 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~-Fd-~~~wV~V 237 (251)
..-+-|+|..|+|||+|++.|.+. +.+. .+ .+++++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS 168 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH
Confidence 345899999999999999999994 3333 33 3455554
No 480
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=94.73 E-value=0.025 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~liG~nGsGKSTLl~~i~G~ 50 (500)
T TIGR02633 27 GECVGLCGENGAGKSTLMKILSGV 50 (500)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 481
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.73 E-value=0.028 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+-|+|.+|+||||+|+.+-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45699999999999999999854
No 482
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=94.73 E-value=0.037 Score=42.75 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.++|.+|+|||||++.+.++
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~ 28 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTN 28 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 566889999999999999988654
No 483
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.73 E-value=0.025 Score=50.54 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 54 Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 458999999999999999999874
No 484
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.73 E-value=0.027 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-|.++|.+|+|||||+..+...
T Consensus 19 kv~lvG~~~vGKTsli~~~~~~ 40 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLKLG 40 (182)
T ss_pred EEEEEcCCCCCHHHHHHHHhcC
Confidence 4778999999999999998654
No 485
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=94.72 E-value=0.025 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 35 Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 35 GETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999874
No 486
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.72 E-value=0.03 Score=46.10 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
--.+||+|..|.|||||.|.+..-
T Consensus 53 Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCc
Confidence 348999999999999999999873
No 487
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.71 E-value=0.027 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||.+.|..-
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCC
Confidence 358999999999999999999884
No 488
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.028 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999775
No 489
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.025 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+...
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999974
No 490
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.71 E-value=0.023 Score=46.71 Aligned_cols=18 Identities=44% Similarity=0.759 Sum_probs=16.7
Q ss_pred CEEEEEEcCCCCcHHHHH
Q 046918 199 PIIISITGMGGIGKTTLA 216 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa 216 (251)
-.+++|+|..|+|||||+
T Consensus 21 Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 21 NKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 569999999999999996
No 491
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.70 E-value=0.026 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 26 GEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 468999999999999999999884
No 492
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.69 E-value=0.028 Score=47.93 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+.||+|.+|.|||||.+.|+.
T Consensus 32 GeI~GIIG~SGAGKSTLiR~iN~ 54 (339)
T COG1135 32 GEIFGIIGYSGAGKSTLLRLINL 54 (339)
T ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Confidence 56999999999999999999987
No 493
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.69 E-value=0.042 Score=51.94 Aligned_cols=45 Identities=42% Similarity=0.581 Sum_probs=36.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-+..|.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 17 divGQe~vv~~L~~~l~~~r----------------l~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR----------------LHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 68999998888888886544 1345678999999999999998664
No 494
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.033 Score=49.17 Aligned_cols=26 Identities=35% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....++.++|+.|+||||++..+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999998764
No 495
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.69 E-value=0.04 Score=48.00 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=32.3
Q ss_pred eccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHH
Q 046918 164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 164 ~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v 219 (251)
-+|..+..-.+++|++++ +..+++.|.+|.|||-||-..
T Consensus 227 ~prn~eQ~~ALdlLld~d-----------------I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 227 RPRNAEQRVALDLLLDDD-----------------IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred CcccHHHHHHHHHhcCCC-----------------CCeEEeeccCCccHhHHHHHH
Confidence 345667777789998877 999999999999999988653
No 496
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.68 E-value=0.026 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 497
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.67 E-value=0.029 Score=46.93 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc
Confidence 458999999999999999999874
No 498
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.67 E-value=0.025 Score=52.15 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.++.-
T Consensus 288 Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 288 GEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred CcEEEEeCCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 499
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.67 E-value=0.026 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+...
T Consensus 29 Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 29 GDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 500
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=94.67 E-value=0.03 Score=44.24 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..|.|+|..|+|||||++.+..+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998875
Done!