Query 046918
Match_columns 251
No_of_seqs 187 out of 1500
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qfl_A MLA10; coiled-coil, (CC 99.7 9.2E-18 3.1E-22 122.3 7.9 80 4-87 1-82 (115)
2 2a5y_B CED-4; apoptosis; HET: 99.6 2.6E-16 8.8E-21 144.3 7.3 74 164-251 131-208 (549)
3 1vt4_I APAF-1 related killer D 99.4 3.4E-13 1.1E-17 129.2 4.8 72 163-250 130-202 (1221)
4 3sfz_A APAF-1, apoptotic pepti 99.3 6.1E-12 2.1E-16 124.4 9.3 66 162-242 125-192 (1249)
5 1z6t_A APAF-1, apoptotic prote 99.2 3.1E-11 1.1E-15 111.2 8.7 64 162-240 125-190 (591)
6 1w5s_A Origin recognition comp 98.3 5.2E-07 1.8E-11 78.9 4.9 80 162-250 23-107 (412)
7 2qby_A CDC6 homolog 1, cell di 98.2 1.2E-06 4.1E-11 75.6 4.8 73 162-249 21-96 (386)
8 2qen_A Walker-type ATPase; unk 98.1 2.1E-06 7.3E-11 73.1 4.6 58 155-239 7-64 (350)
9 1fnn_A CDC6P, cell division co 98.1 8.2E-06 2.8E-10 70.6 7.8 76 162-250 18-94 (389)
10 2qby_B CDC6 homolog 3, cell di 98.0 2.8E-06 9.5E-11 73.6 3.9 75 162-249 21-102 (384)
11 2v1u_A Cell division control p 98.0 5E-06 1.7E-10 71.7 5.6 75 162-249 20-98 (387)
12 2fna_A Conserved hypothetical 97.9 1.6E-05 5.3E-10 67.8 6.9 58 155-239 8-65 (357)
13 1jbk_A CLPB protein; beta barr 97.9 9.3E-06 3.2E-10 62.6 5.1 44 162-222 23-66 (195)
14 2chg_A Replication factor C sm 97.9 2.8E-05 9.5E-10 61.3 7.0 44 162-222 18-61 (226)
15 2p65_A Hypothetical protein PF 97.8 1.4E-05 4.7E-10 61.5 4.2 44 162-222 23-66 (187)
16 1njg_A DNA polymerase III subu 97.7 4.2E-05 1.4E-09 61.0 4.8 45 162-222 24-68 (250)
17 1sxj_B Activator 1 37 kDa subu 97.5 9.6E-05 3.3E-09 62.1 5.0 44 162-222 22-65 (323)
18 1rz3_A Hypothetical protein rb 97.3 0.00024 8.3E-09 55.9 5.5 42 166-221 3-44 (201)
19 3ec2_A DNA replication protein 97.3 0.00015 5.1E-09 55.9 3.5 24 199-222 38-61 (180)
20 1iqp_A RFCS; clamp loader, ext 97.3 0.0002 6.7E-09 60.3 4.4 44 162-222 26-69 (327)
21 3n70_A Transport activator; si 97.2 0.00017 6E-09 53.7 3.4 46 162-222 2-47 (145)
22 2w58_A DNAI, primosome compone 97.2 0.00032 1.1E-08 55.0 4.7 37 200-238 55-91 (202)
23 3h4m_A Proteasome-activating n 97.2 0.00034 1.2E-08 57.9 4.6 57 162-222 18-74 (285)
24 1sxj_D Activator 1 41 kDa subu 97.2 0.00032 1.1E-08 59.7 4.4 44 162-222 38-81 (353)
25 3c8u_A Fructokinase; YP_612366 97.1 0.00044 1.5E-08 54.7 4.9 25 198-222 21-45 (208)
26 3bos_A Putative DNA replicatio 97.1 0.00053 1.8E-08 54.8 5.4 38 199-238 52-89 (242)
27 3pxg_A Negative regulator of g 97.1 0.00036 1.2E-08 62.4 4.6 44 162-222 181-224 (468)
28 3syl_A Protein CBBX; photosynt 97.1 0.00056 1.9E-08 57.2 5.3 58 162-222 32-90 (309)
29 3te6_A Regulatory protein SIR3 97.1 0.00027 9.3E-09 59.9 3.1 49 162-223 21-69 (318)
30 3co5_A Putative two-component 97.0 0.0002 7E-09 53.2 1.4 46 162-222 5-50 (143)
31 3b9p_A CG5977-PA, isoform A; A 97.0 0.00064 2.2E-08 56.6 4.7 56 162-222 22-77 (297)
32 1zp6_A Hypothetical protein AT 97.0 0.00054 1.9E-08 53.1 3.9 25 199-223 9-33 (191)
33 2chq_A Replication factor C sm 96.9 0.00051 1.7E-08 57.5 3.6 44 162-222 18-61 (319)
34 3cf0_A Transitional endoplasmi 96.9 0.00065 2.2E-08 57.0 4.2 57 162-222 16-72 (301)
35 1sxj_A Activator 1 95 kDa subu 96.9 0.00074 2.5E-08 61.1 4.8 58 162-222 40-100 (516)
36 3pfi_A Holliday junction ATP-d 96.9 0.00052 1.8E-08 58.3 3.5 49 162-222 30-78 (338)
37 3uk6_A RUVB-like 2; hexameric 96.9 0.0011 3.7E-08 56.8 5.5 46 162-222 45-93 (368)
38 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0014 4.9E-08 53.2 5.9 53 162-222 7-62 (262)
39 4gp7_A Metallophosphoesterase; 96.9 0.00063 2.2E-08 52.1 3.5 23 199-221 9-31 (171)
40 1jr3_A DNA polymerase III subu 96.9 0.00092 3.1E-08 57.3 4.8 45 162-222 17-61 (373)
41 1odf_A YGR205W, hypothetical 3 96.9 0.0012 4.2E-08 55.1 5.3 26 197-222 29-54 (290)
42 1sxj_E Activator 1 40 kDa subu 96.8 0.00055 1.9E-08 58.4 3.2 43 162-221 15-58 (354)
43 1hqc_A RUVB; extended AAA-ATPa 96.8 0.00065 2.2E-08 57.1 3.4 49 162-222 13-61 (324)
44 3eie_A Vacuolar protein sortin 96.8 0.0012 4.3E-08 55.7 5.2 56 162-222 19-74 (322)
45 3d8b_A Fidgetin-like protein 1 96.8 0.001 3.6E-08 57.1 4.7 53 162-222 85-140 (357)
46 1in4_A RUVB, holliday junction 96.8 0.00071 2.4E-08 57.6 3.6 49 162-222 26-74 (334)
47 3pvs_A Replication-associated 96.8 0.00074 2.5E-08 60.0 3.7 44 162-222 27-73 (447)
48 3uie_A Adenylyl-sulfate kinase 96.8 0.00096 3.3E-08 52.3 3.9 24 199-222 25-48 (200)
49 1uj2_A Uridine-cytidine kinase 96.7 0.00091 3.1E-08 54.5 3.7 25 197-221 20-44 (252)
50 3vaa_A Shikimate kinase, SK; s 96.7 0.00083 2.8E-08 52.7 3.3 23 199-221 25-47 (199)
51 2cvh_A DNA repair and recombin 96.7 0.0029 9.9E-08 49.9 6.5 44 199-247 20-63 (220)
52 1knq_A Gluconate kinase; ALFA/ 96.7 0.0013 4.4E-08 50.2 4.2 24 198-221 7-30 (175)
53 1qvr_A CLPB protein; coiled co 96.7 0.00094 3.2E-08 64.1 3.9 44 162-222 171-214 (854)
54 1d2n_A N-ethylmaleimide-sensit 96.7 0.0016 5.4E-08 53.5 4.8 47 162-222 34-87 (272)
55 1sxj_C Activator 1 40 kDa subu 96.7 0.0014 4.7E-08 55.8 4.5 44 162-222 26-69 (340)
56 3pxi_A Negative regulator of g 96.7 0.0012 4.2E-08 62.4 4.6 44 162-222 181-224 (758)
57 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0016 5.5E-08 55.2 4.8 56 162-222 13-68 (322)
58 1lv7_A FTSH; alpha/beta domain 96.7 0.0012 4.1E-08 53.8 3.9 22 201-222 47-68 (257)
59 2bjv_A PSP operon transcriptio 96.7 0.00097 3.3E-08 54.6 3.3 46 162-222 7-52 (265)
60 2qt1_A Nicotinamide riboside k 96.7 0.0013 4.5E-08 51.7 3.9 26 197-222 19-44 (207)
61 4eun_A Thermoresistant glucoki 96.7 0.0011 3.6E-08 52.1 3.4 23 199-221 29-51 (200)
62 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0016 5.6E-08 61.5 5.2 44 162-222 187-230 (758)
63 3tqc_A Pantothenate kinase; bi 96.6 0.0023 7.8E-08 54.3 5.5 25 197-221 90-114 (321)
64 1znw_A Guanylate kinase, GMP k 96.6 0.0011 3.6E-08 52.4 3.3 23 199-221 20-42 (207)
65 3aez_A Pantothenate kinase; tr 96.6 0.0013 4.4E-08 55.6 3.9 25 197-221 88-112 (312)
66 3t61_A Gluconokinase; PSI-biol 96.6 0.00098 3.3E-08 52.2 2.9 24 199-222 18-41 (202)
67 2kjq_A DNAA-related protein; s 96.6 0.00069 2.4E-08 50.8 1.9 24 199-222 36-59 (149)
68 1zuh_A Shikimate kinase; alpha 96.6 0.0011 3.7E-08 50.3 3.0 25 197-221 5-29 (168)
69 3tau_A Guanylate kinase, GMP k 96.6 0.0014 4.7E-08 51.9 3.7 24 199-222 8-31 (208)
70 1htw_A HI0065; nucleotide-bind 96.6 0.0014 4.7E-08 49.7 3.5 23 199-221 33-55 (158)
71 1ofh_A ATP-dependent HSL prote 96.6 0.0014 5E-08 54.5 4.0 56 162-222 16-73 (310)
72 1uf9_A TT1252 protein; P-loop, 96.6 0.0015 5.1E-08 50.9 3.7 24 197-220 6-29 (203)
73 1ukz_A Uridylate kinase; trans 96.6 0.0019 6.6E-08 50.4 4.3 25 197-221 13-37 (203)
74 2bbw_A Adenylate kinase 4, AK4 96.6 0.0013 4.6E-08 53.2 3.4 22 199-220 27-48 (246)
75 1rj9_A FTSY, signal recognitio 96.6 0.0015 5E-08 55.0 3.7 24 198-221 101-124 (304)
76 1n0w_A DNA repair protein RAD5 96.5 0.0039 1.3E-07 49.9 6.1 48 199-246 24-75 (243)
77 1z6g_A Guanylate kinase; struc 96.5 0.0011 3.7E-08 52.9 2.7 23 199-221 23-45 (218)
78 2jeo_A Uridine-cytidine kinase 96.5 0.0018 6E-08 52.5 3.9 24 198-221 24-47 (245)
79 4fcw_A Chaperone protein CLPB; 96.5 0.002 6.8E-08 53.8 4.4 53 162-222 18-70 (311)
80 3hws_A ATP-dependent CLP prote 96.5 0.0027 9.1E-08 54.6 4.9 59 162-222 16-74 (363)
81 3tif_A Uncharacterized ABC tra 96.5 0.0015 5.2E-08 52.8 3.2 24 199-222 31-54 (235)
82 2qor_A Guanylate kinase; phosp 96.5 0.0014 4.7E-08 51.6 2.9 26 197-222 10-35 (204)
83 2pcj_A ABC transporter, lipopr 96.5 0.0015 5.2E-08 52.4 3.1 24 199-222 30-53 (224)
84 2qp9_X Vacuolar protein sortin 96.5 0.0026 9E-08 54.6 4.7 56 162-222 52-107 (355)
85 2yvu_A Probable adenylyl-sulfa 96.5 0.0022 7.5E-08 49.5 3.9 25 198-222 12-36 (186)
86 3vfd_A Spastin; ATPase, microt 96.4 0.0026 8.9E-08 55.2 4.7 56 162-222 116-171 (389)
87 1s96_A Guanylate kinase, GMP k 96.4 0.0016 5.5E-08 52.1 3.1 26 197-222 14-39 (219)
88 3iij_A Coilin-interacting nucl 96.4 0.0014 4.9E-08 50.2 2.7 24 198-221 10-33 (180)
89 2onk_A Molybdate/tungstate ABC 96.4 0.0017 5.8E-08 52.7 3.2 23 200-222 25-47 (240)
90 3ney_A 55 kDa erythrocyte memb 96.4 0.0021 7.2E-08 50.5 3.6 24 198-221 18-41 (197)
91 2hf9_A Probable hydrogenase ni 96.4 0.003 1E-07 50.1 4.4 24 199-222 38-61 (226)
92 4e22_A Cytidylate kinase; P-lo 96.4 0.0018 6.2E-08 52.8 3.1 22 199-220 27-48 (252)
93 2cdn_A Adenylate kinase; phosp 96.4 0.0024 8.2E-08 49.9 3.7 25 197-221 18-42 (201)
94 1b0u_A Histidine permease; ABC 96.4 0.0019 6.4E-08 53.2 3.2 24 199-222 32-55 (262)
95 2r62_A Cell division protease 96.4 0.0019 6.5E-08 52.8 3.2 56 162-222 12-67 (268)
96 2cbz_A Multidrug resistance-as 96.4 0.002 6.9E-08 52.2 3.3 24 199-222 31-54 (237)
97 1ji0_A ABC transporter; ATP bi 96.3 0.002 6.8E-08 52.3 3.2 24 199-222 32-55 (240)
98 2ehv_A Hypothetical protein PH 96.3 0.002 6.9E-08 51.8 3.2 22 199-220 30-51 (251)
99 3b9q_A Chloroplast SRP recepto 96.3 0.0024 8.3E-08 53.7 3.8 25 198-222 99-123 (302)
100 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0043 1.5E-07 53.2 5.3 25 197-221 22-46 (359)
101 4a74_A DNA repair and recombin 96.3 0.0023 7.8E-08 50.8 3.4 47 198-244 24-74 (231)
102 1g6h_A High-affinity branched- 96.3 0.0021 7.1E-08 52.7 3.2 24 199-222 33-56 (257)
103 2yhs_A FTSY, cell division pro 96.3 0.0054 1.8E-07 54.9 6.1 25 197-221 291-315 (503)
104 2c95_A Adenylate kinase 1; tra 96.3 0.0022 7.5E-08 49.6 3.2 23 199-221 9-31 (196)
105 3u61_B DNA polymerase accessor 96.3 0.0034 1.2E-07 52.8 4.6 45 162-222 27-71 (324)
106 1oix_A RAS-related protein RAB 96.3 0.0022 7.6E-08 49.7 3.2 24 199-222 29-52 (191)
107 3gfo_A Cobalt import ATP-bindi 96.3 0.0021 7.1E-08 53.3 3.2 23 199-221 34-56 (275)
108 2zan_A Vacuolar protein sortin 96.3 0.0036 1.2E-07 55.5 4.9 53 162-222 135-190 (444)
109 1y63_A LMAJ004144AAA protein; 96.3 0.0028 9.7E-08 48.9 3.7 25 198-222 9-33 (184)
110 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0022 7.6E-08 52.3 3.3 24 199-222 29-52 (250)
111 3b85_A Phosphate starvation-in 96.3 0.0016 5.6E-08 51.6 2.4 23 200-222 23-45 (208)
112 2olj_A Amino acid ABC transpor 96.3 0.0022 7.4E-08 52.9 3.2 24 199-222 50-73 (263)
113 1gvn_B Zeta; postsegregational 96.3 0.0048 1.6E-07 51.4 5.3 25 197-221 31-55 (287)
114 1sgw_A Putative ABC transporte 96.3 0.0019 6.5E-08 51.5 2.7 24 199-222 35-58 (214)
115 2pze_A Cystic fibrosis transme 96.3 0.0023 8E-08 51.5 3.2 24 199-222 34-57 (229)
116 1mv5_A LMRA, multidrug resista 96.3 0.0024 8.3E-08 51.8 3.4 24 199-222 28-51 (243)
117 2p5t_B PEZT; postsegregational 96.3 0.0033 1.1E-07 51.3 4.2 25 197-221 30-54 (253)
118 1sq5_A Pantothenate kinase; P- 96.3 0.003 1E-07 53.1 4.0 25 197-221 78-102 (308)
119 4g1u_C Hemin import ATP-bindin 96.3 0.0023 8E-08 52.7 3.2 23 199-221 37-59 (266)
120 1ojl_A Transcriptional regulat 96.3 0.0025 8.7E-08 53.5 3.4 46 162-222 3-48 (304)
121 1vpl_A ABC transporter, ATP-bi 96.3 0.0024 8.1E-08 52.4 3.2 24 199-222 41-64 (256)
122 2ff7_A Alpha-hemolysin translo 96.2 0.0024 8.2E-08 52.0 3.2 24 199-222 35-58 (247)
123 3fwy_A Light-independent proto 96.2 0.0028 9.6E-08 53.6 3.7 24 197-220 46-69 (314)
124 2zu0_C Probable ATP-dependent 96.2 0.0025 8.4E-08 52.6 3.2 24 199-222 46-69 (267)
125 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0077 2.6E-07 54.2 6.7 42 162-222 23-64 (500)
126 2ixe_A Antigen peptide transpo 96.2 0.0025 8.5E-08 52.7 3.2 24 199-222 45-68 (271)
127 2c9o_A RUVB-like 1; hexameric 96.2 0.0052 1.8E-07 54.6 5.5 46 162-222 38-86 (456)
128 3lnc_A Guanylate kinase, GMP k 96.2 0.0016 5.5E-08 52.2 2.0 22 199-220 27-48 (231)
129 2wsm_A Hydrogenase expression/ 96.2 0.0032 1.1E-07 49.8 3.7 25 198-222 29-53 (221)
130 3t15_A Ribulose bisphosphate c 96.2 0.0027 9.1E-08 53.1 3.4 26 197-222 34-59 (293)
131 2bwj_A Adenylate kinase 5; pho 96.2 0.0024 8E-08 49.6 2.8 23 199-221 12-34 (199)
132 2ghi_A Transport protein; mult 96.2 0.0026 8.9E-08 52.2 3.2 24 199-222 46-69 (260)
133 2yz2_A Putative ABC transporte 96.2 0.0026 8.9E-08 52.4 3.2 24 199-222 33-56 (266)
134 1ixz_A ATP-dependent metallopr 96.2 0.0022 7.7E-08 52.0 2.8 21 202-222 52-72 (254)
135 2qi9_C Vitamin B12 import ATP- 96.2 0.0026 9E-08 51.9 3.2 24 199-222 26-49 (249)
136 2f6r_A COA synthase, bifunctio 96.2 0.0034 1.2E-07 52.1 3.8 24 197-220 73-96 (281)
137 2ihy_A ABC transporter, ATP-bi 96.2 0.0027 9.3E-08 52.7 3.2 24 199-222 47-70 (279)
138 3e70_C DPA, signal recognition 96.2 0.0036 1.2E-07 53.3 3.9 26 197-222 127-152 (328)
139 2nq2_C Hypothetical ABC transp 96.2 0.0028 9.4E-08 51.9 3.1 24 199-222 31-54 (253)
140 2og2_A Putative signal recogni 96.1 0.0035 1.2E-07 54.0 3.8 26 197-222 155-180 (359)
141 2px0_A Flagellar biosynthesis 96.1 0.0032 1.1E-07 52.7 3.5 24 198-221 104-127 (296)
142 2x8a_A Nuclear valosin-contain 96.1 0.0026 9E-08 52.6 2.8 21 202-222 47-67 (274)
143 1np6_A Molybdopterin-guanine d 96.1 0.0033 1.1E-07 48.4 3.1 25 198-222 5-29 (174)
144 2r44_A Uncharacterized protein 96.1 0.0031 1.1E-07 53.3 3.2 41 162-221 28-68 (331)
145 1l8q_A Chromosomal replication 96.1 0.0048 1.6E-07 52.0 4.3 24 199-222 37-60 (324)
146 2vp4_A Deoxynucleoside kinase; 96.1 0.0036 1.2E-07 50.2 3.4 26 197-222 18-43 (230)
147 1nn5_A Similar to deoxythymidy 96.1 0.0035 1.2E-07 49.2 3.3 24 199-222 9-32 (215)
148 1zu4_A FTSY; GTPase, signal re 96.1 0.0098 3.4E-07 50.3 6.2 25 197-221 103-127 (320)
149 2grj_A Dephospho-COA kinase; T 96.1 0.0039 1.3E-07 48.8 3.4 25 197-221 10-34 (192)
150 1m7g_A Adenylylsulfate kinase; 96.0 0.0041 1.4E-07 49.0 3.6 24 199-222 25-48 (211)
151 1yrb_A ATP(GTP)binding protein 96.0 0.0066 2.3E-07 49.3 4.8 26 196-221 11-36 (262)
152 2qgz_A Helicase loader, putati 96.0 0.0056 1.9E-07 51.5 4.4 24 199-222 152-175 (308)
153 2wwf_A Thymidilate kinase, put 96.0 0.004 1.4E-07 48.8 3.3 24 199-222 10-33 (212)
154 2z4s_A Chromosomal replication 96.0 0.0027 9.1E-08 56.2 2.4 24 199-222 130-153 (440)
155 4b4t_K 26S protease regulatory 96.0 0.0051 1.7E-07 54.2 4.1 53 162-222 173-229 (428)
156 2pjz_A Hypothetical protein ST 96.0 0.0038 1.3E-07 51.4 3.2 23 200-222 31-53 (263)
157 2eyu_A Twitching motility prot 96.0 0.0043 1.5E-07 51.0 3.5 23 199-221 25-47 (261)
158 1iy2_A ATP-dependent metallopr 96.0 0.0033 1.1E-07 51.9 2.8 21 202-222 76-96 (278)
159 2xxa_A Signal recognition part 96.0 0.011 3.8E-07 52.2 6.2 25 197-221 98-122 (433)
160 3p32_A Probable GTPase RV1496/ 95.9 0.0083 2.9E-07 51.4 5.2 25 197-221 77-101 (355)
161 1vma_A Cell division protein F 95.9 0.0053 1.8E-07 51.6 3.9 26 197-222 102-127 (306)
162 3hu3_A Transitional endoplasmi 95.9 0.0051 1.7E-07 55.2 3.9 57 162-222 205-261 (489)
163 1v5w_A DMC1, meiotic recombina 95.9 0.019 6.4E-07 49.0 7.2 52 197-248 120-175 (343)
164 3umf_A Adenylate kinase; rossm 95.9 0.0063 2.2E-07 48.6 3.9 27 196-222 26-52 (217)
165 3nwj_A ATSK2; P loop, shikimat 95.9 0.0037 1.3E-07 51.0 2.6 22 200-221 49-70 (250)
166 2bbs_A Cystic fibrosis transme 95.9 0.0046 1.6E-07 51.6 3.2 24 199-222 64-87 (290)
167 4eaq_A DTMP kinase, thymidylat 95.9 0.014 4.7E-07 46.9 5.9 25 198-222 25-49 (229)
168 1ypw_A Transitional endoplasmi 95.8 0.005 1.7E-07 58.6 3.7 57 162-222 205-261 (806)
169 3nh6_A ATP-binding cassette SU 95.8 0.0036 1.2E-07 52.7 2.4 23 199-221 80-102 (306)
170 4b4t_L 26S protease subunit RP 95.8 0.0067 2.3E-07 53.5 4.2 53 162-222 182-238 (437)
171 2wji_A Ferrous iron transport 95.8 0.0067 2.3E-07 45.6 3.7 23 200-222 4-26 (165)
172 2v9p_A Replication protein E1; 95.8 0.005 1.7E-07 51.8 3.2 23 199-221 126-148 (305)
173 4b4t_M 26S protease regulatory 95.8 0.0065 2.2E-07 53.6 4.0 53 162-222 182-238 (434)
174 1pzn_A RAD51, DNA repair and r 95.8 0.011 3.7E-07 50.7 5.3 49 197-245 129-181 (349)
175 3kl4_A SRP54, signal recogniti 95.8 0.013 4.4E-07 51.7 5.9 24 198-221 96-119 (433)
176 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0053 1.8E-07 48.6 3.1 24 199-222 23-46 (235)
177 2z43_A DNA repair and recombin 95.8 0.016 5.6E-07 48.9 6.3 49 199-247 107-159 (324)
178 1um8_A ATP-dependent CLP prote 95.8 0.0086 2.9E-07 51.6 4.6 24 199-222 72-95 (376)
179 2ged_A SR-beta, signal recogni 95.8 0.007 2.4E-07 46.5 3.7 25 198-222 47-71 (193)
180 3r20_A Cytidylate kinase; stru 95.7 0.0057 1.9E-07 49.4 3.1 23 199-221 9-31 (233)
181 4b4t_J 26S protease regulatory 95.7 0.006 2.1E-07 53.2 3.5 53 162-222 149-205 (405)
182 3tui_C Methionine import ATP-b 95.7 0.0058 2E-07 52.7 3.2 24 199-222 54-77 (366)
183 1g8p_A Magnesium-chelatase 38 95.7 0.0037 1.3E-07 53.0 2.0 44 162-222 25-68 (350)
184 3fvq_A Fe(3+) IONS import ATP- 95.7 0.0057 2E-07 52.6 3.2 24 199-222 30-53 (359)
185 3tlx_A Adenylate kinase 2; str 95.7 0.0074 2.5E-07 48.8 3.7 24 198-221 28-51 (243)
186 1z47_A CYSA, putative ABC-tran 95.7 0.0063 2.2E-07 52.3 3.3 24 199-222 41-64 (355)
187 2v3c_C SRP54, signal recogniti 95.6 0.0078 2.7E-07 53.1 3.8 25 198-222 98-122 (432)
188 2ce7_A Cell division protein F 95.6 0.011 3.6E-07 52.9 4.6 22 201-222 51-72 (476)
189 2yyz_A Sugar ABC transporter, 95.6 0.007 2.4E-07 52.1 3.3 24 199-222 29-52 (359)
190 1q3t_A Cytidylate kinase; nucl 95.6 0.0081 2.8E-07 48.2 3.5 25 197-221 14-38 (236)
191 2i1q_A DNA repair and recombin 95.6 0.018 6E-07 48.6 5.7 51 198-248 97-161 (322)
192 2it1_A 362AA long hypothetical 95.6 0.0071 2.4E-07 52.1 3.2 24 199-222 29-52 (362)
193 1g29_1 MALK, maltose transport 95.5 0.0072 2.5E-07 52.2 3.3 24 199-222 29-52 (372)
194 1z2a_A RAS-related protein RAB 95.5 0.0073 2.5E-07 44.9 2.9 24 199-222 5-28 (168)
195 3kta_A Chromosome segregation 95.5 0.0082 2.8E-07 45.9 3.2 22 200-221 27-48 (182)
196 3rlf_A Maltose/maltodextrin im 95.5 0.0076 2.6E-07 52.2 3.2 24 199-222 29-52 (381)
197 3dm5_A SRP54, signal recogniti 95.5 0.021 7E-07 50.5 6.1 24 198-221 99-122 (443)
198 1v43_A Sugar-binding transport 95.5 0.0076 2.6E-07 52.1 3.2 24 199-222 37-60 (372)
199 2dhr_A FTSH; AAA+ protein, hex 95.5 0.0071 2.4E-07 54.3 3.1 21 202-222 67-87 (499)
200 1ls1_A Signal recognition part 95.5 0.0094 3.2E-07 49.8 3.7 25 198-222 97-121 (295)
201 2a9k_A RAS-related protein RAL 95.5 0.0091 3.1E-07 45.3 3.3 25 199-223 18-42 (187)
202 1fzq_A ADP-ribosylation factor 95.4 0.016 5.5E-07 44.2 4.7 25 198-222 15-39 (181)
203 1p5z_B DCK, deoxycytidine kina 95.4 0.0064 2.2E-07 49.7 2.5 26 197-222 22-47 (263)
204 1cr0_A DNA primase/helicase; R 95.4 0.0084 2.9E-07 49.8 3.2 24 199-222 35-58 (296)
205 1nlf_A Regulatory protein REPA 95.4 0.0085 2.9E-07 49.4 3.2 23 199-221 30-52 (279)
206 3k1j_A LON protease, ATP-depen 95.4 0.011 3.9E-07 54.3 4.3 42 162-222 42-83 (604)
207 1u8z_A RAS-related protein RAL 95.4 0.0085 2.9E-07 44.4 3.0 24 199-222 4-27 (168)
208 3d31_A Sulfate/molybdate ABC t 95.4 0.0063 2.1E-07 52.2 2.4 24 199-222 26-49 (348)
209 3con_A GTPase NRAS; structural 95.4 0.0083 2.8E-07 45.9 2.9 23 200-222 22-44 (190)
210 3t1o_A Gliding protein MGLA; G 95.4 0.008 2.7E-07 46.1 2.8 24 199-222 14-37 (198)
211 2zr9_A Protein RECA, recombina 95.4 0.056 1.9E-06 46.2 8.3 44 198-243 60-103 (349)
212 1ak2_A Adenylate kinase isoenz 95.4 0.0094 3.2E-07 47.7 3.3 24 198-221 15-38 (233)
213 1p9r_A General secretion pathw 95.4 0.018 6E-07 50.6 5.2 23 199-221 167-189 (418)
214 1svi_A GTP-binding protein YSX 95.4 0.013 4.3E-07 45.0 3.9 27 197-223 21-47 (195)
215 3end_A Light-independent proto 95.4 0.011 3.7E-07 49.4 3.7 25 197-221 39-63 (307)
216 2lkc_A Translation initiation 95.4 0.016 5.5E-07 43.6 4.4 26 197-222 6-31 (178)
217 3pqc_A Probable GTP-binding pr 95.4 0.013 4.5E-07 44.7 3.9 27 197-223 21-47 (195)
218 2qnr_A Septin-2, protein NEDD5 95.3 0.0078 2.7E-07 50.4 2.8 23 199-222 19-41 (301)
219 1tq4_A IIGP1, interferon-induc 95.3 0.0073 2.5E-07 53.0 2.6 24 198-221 68-91 (413)
220 4b4t_H 26S protease regulatory 95.3 0.012 4.2E-07 52.1 4.1 53 162-222 210-266 (467)
221 2j37_W Signal recognition part 95.3 0.024 8.4E-07 50.9 6.1 25 197-221 99-123 (504)
222 1lw7_A Transcriptional regulat 95.3 0.0094 3.2E-07 51.3 3.2 23 199-221 170-192 (365)
223 1pui_A ENGB, probable GTP-bind 95.3 0.0057 1.9E-07 47.7 1.7 25 199-223 26-50 (210)
224 1oxx_K GLCV, glucose, ABC tran 95.3 0.0056 1.9E-07 52.6 1.7 24 199-222 31-54 (353)
225 2obl_A ESCN; ATPase, hydrolase 95.3 0.0088 3E-07 51.2 2.9 24 199-222 71-94 (347)
226 1svm_A Large T antigen; AAA+ f 95.3 0.011 3.8E-07 51.2 3.6 23 199-221 169-191 (377)
227 1z08_A RAS-related protein RAB 95.3 0.012 4.1E-07 43.9 3.4 24 199-222 6-29 (170)
228 3tw8_B RAS-related protein RAB 95.3 0.01 3.5E-07 44.7 3.0 27 197-223 7-33 (181)
229 3pxi_A Negative regulator of g 95.3 0.017 5.8E-07 54.6 5.0 53 162-222 492-544 (758)
230 1z0j_A RAB-22, RAS-related pro 95.3 0.01 3.5E-07 44.2 2.9 25 199-223 6-30 (170)
231 4bas_A ADP-ribosylation factor 95.3 0.012 4.1E-07 45.3 3.4 28 196-223 14-41 (199)
232 3hr8_A Protein RECA; alpha and 95.2 0.028 9.6E-07 48.2 5.9 44 198-243 60-103 (356)
233 1ky3_A GTP-binding protein YPT 95.2 0.01 3.5E-07 44.8 2.9 26 197-222 6-31 (182)
234 1f6b_A SAR1; gtpases, N-termin 95.2 0.0091 3.1E-07 46.4 2.7 23 200-222 26-48 (198)
235 2gf9_A RAS-related protein RAB 95.2 0.013 4.6E-07 44.8 3.6 27 197-223 20-46 (189)
236 3zvl_A Bifunctional polynucleo 95.2 0.012 4.1E-07 51.6 3.5 26 197-222 256-281 (416)
237 3gd7_A Fusion complex of cysti 95.2 0.011 3.7E-07 51.4 3.2 24 199-222 47-70 (390)
238 3a8t_A Adenylate isopentenyltr 95.2 0.015 5.2E-07 49.4 4.0 24 199-222 40-63 (339)
239 1nrj_B SR-beta, signal recogni 95.2 0.013 4.6E-07 45.9 3.5 27 197-223 10-36 (218)
240 2fn4_A P23, RAS-related protei 95.2 0.011 3.8E-07 44.5 2.9 26 197-222 7-32 (181)
241 2e87_A Hypothetical protein PH 95.1 0.11 3.9E-06 44.3 9.5 26 198-223 166-191 (357)
242 3cf2_A TER ATPase, transitiona 95.1 0.018 6E-07 54.7 4.7 53 162-222 205-261 (806)
243 2a5j_A RAS-related protein RAB 95.1 0.018 6.2E-07 44.2 4.1 24 199-222 21-44 (191)
244 2qm8_A GTPase/ATPase; G protei 95.1 0.015 5.2E-07 49.5 3.9 25 197-221 53-77 (337)
245 2ewv_A Twitching motility prot 95.1 0.012 4E-07 50.9 3.2 23 199-221 136-158 (372)
246 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.012 4.1E-07 44.3 2.9 25 198-222 6-30 (177)
247 3c5c_A RAS-like protein 12; GD 95.1 0.013 4.6E-07 44.9 3.3 24 199-222 21-44 (187)
248 1z0f_A RAB14, member RAS oncog 95.1 0.012 4.1E-07 44.2 3.0 26 198-223 14-39 (179)
249 1r2q_A RAS-related protein RAB 95.1 0.012 4.2E-07 43.7 3.0 24 199-222 6-29 (170)
250 3ihw_A Centg3; RAS, centaurin, 95.1 0.012 4.1E-07 45.1 2.9 24 199-222 20-43 (184)
251 2gza_A Type IV secretion syste 95.1 0.01 3.6E-07 51.0 2.8 24 199-222 175-198 (361)
252 1upt_A ARL1, ADP-ribosylation 95.1 0.012 4.3E-07 43.8 2.9 24 199-222 7-30 (171)
253 2www_A Methylmalonic aciduria 95.1 0.015 5.1E-07 49.8 3.7 24 198-221 73-96 (349)
254 3llu_A RAS-related GTP-binding 95.1 0.015 5.1E-07 45.0 3.4 26 197-222 18-43 (196)
255 1m2o_B GTP-binding protein SAR 95.1 0.012 4.2E-07 45.3 2.9 23 200-222 24-46 (190)
256 2bme_A RAB4A, RAS-related prot 95.0 0.013 4.3E-07 44.6 2.9 25 198-222 9-33 (186)
257 2h57_A ADP-ribosylation factor 95.0 0.014 4.8E-07 44.7 3.2 27 197-223 19-45 (190)
258 4b4t_I 26S protease regulatory 95.0 0.017 5.7E-07 50.8 3.9 53 162-222 183-239 (437)
259 1moz_A ARL1, ADP-ribosylation 95.0 0.02 6.9E-07 43.3 4.0 24 199-222 18-41 (183)
260 3foz_A TRNA delta(2)-isopenten 95.0 0.017 5.8E-07 48.6 3.8 25 198-222 9-33 (316)
261 3jvv_A Twitching mobility prot 95.0 0.013 4.6E-07 50.2 3.2 23 199-221 123-145 (356)
262 2g6b_A RAS-related protein RAB 95.0 0.016 5.3E-07 43.8 3.3 25 199-223 10-34 (180)
263 3lda_A DNA repair protein RAD5 95.0 0.033 1.1E-06 48.5 5.8 49 198-246 177-229 (400)
264 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.011 3.7E-07 50.3 2.6 23 200-222 172-194 (330)
265 3kkq_A RAS-related protein M-R 95.0 0.013 4.6E-07 44.4 2.9 24 199-222 18-41 (183)
266 2qag_B Septin-6, protein NEDD5 95.0 0.012 4.1E-07 51.8 2.9 21 202-222 45-65 (427)
267 2oil_A CATX-8, RAS-related pro 95.0 0.014 4.6E-07 44.9 2.9 24 199-222 25-48 (193)
268 2y8e_A RAB-protein 6, GH09086P 94.9 0.014 4.8E-07 43.9 2.9 23 200-222 15-37 (179)
269 2npi_A Protein CLP1; CLP1-PCF1 94.9 0.011 3.7E-07 52.6 2.5 24 199-222 138-161 (460)
270 3cbq_A GTP-binding protein REM 94.9 0.012 4.2E-07 45.6 2.6 25 197-221 21-45 (195)
271 3bwd_D RAC-like GTP-binding pr 94.9 0.015 5E-07 44.0 3.0 24 199-222 8-31 (182)
272 2bov_A RAla, RAS-related prote 94.9 0.014 4.9E-07 45.1 3.0 25 198-222 13-37 (206)
273 3bc1_A RAS-related protein RAB 94.9 0.015 5E-07 44.3 3.0 25 198-222 10-34 (195)
274 2efe_B Small GTP-binding prote 94.9 0.015 5E-07 44.0 2.9 24 199-222 12-35 (181)
275 1yqt_A RNAse L inhibitor; ATP- 94.9 0.014 4.9E-07 52.9 3.2 23 200-222 313-335 (538)
276 3ozx_A RNAse L inhibitor; ATP 94.9 0.015 5.2E-07 52.7 3.4 25 198-222 24-48 (538)
277 3ld9_A DTMP kinase, thymidylat 94.9 0.025 8.6E-07 45.2 4.3 25 198-222 20-44 (223)
278 1ksh_A ARF-like protein 2; sma 94.9 0.017 5.7E-07 44.0 3.2 25 199-223 18-42 (186)
279 1vg8_A RAS-related protein RAB 94.9 0.015 5.1E-07 45.0 2.9 27 197-223 6-32 (207)
280 1zj6_A ADP-ribosylation factor 94.8 0.038 1.3E-06 42.1 5.2 24 199-222 16-39 (187)
281 2fg5_A RAB-22B, RAS-related pr 94.8 0.015 5.1E-07 44.7 2.9 24 199-222 23-46 (192)
282 1zbd_A Rabphilin-3A; G protein 94.8 0.017 5.9E-07 44.6 3.2 27 197-223 6-32 (203)
283 3ozx_A RNAse L inhibitor; ATP 94.8 0.015 5E-07 52.8 3.2 23 200-222 295-317 (538)
284 2p67_A LAO/AO transport system 94.8 0.019 6.4E-07 48.9 3.7 25 197-221 54-78 (341)
285 1ega_A Protein (GTP-binding pr 94.8 0.019 6.4E-07 48.0 3.6 26 198-223 7-32 (301)
286 1yqt_A RNAse L inhibitor; ATP- 94.8 0.015 5.3E-07 52.7 3.2 24 199-222 47-70 (538)
287 2atv_A RERG, RAS-like estrogen 94.8 0.016 5.4E-07 44.7 2.9 24 199-222 28-51 (196)
288 3lxx_A GTPase IMAP family memb 94.8 0.017 5.9E-07 46.2 3.2 26 198-223 28-53 (239)
289 1u94_A RECA protein, recombina 94.8 0.03 1E-06 48.1 4.8 43 199-243 63-105 (356)
290 1j8m_F SRP54, signal recogniti 94.8 0.014 4.8E-07 48.8 2.7 23 199-221 98-120 (297)
291 1g41_A Heat shock protein HSLU 94.8 0.03 1E-06 49.4 4.9 58 162-222 16-73 (444)
292 2qu8_A Putative nucleolar GTP- 94.8 0.026 8.8E-07 44.8 4.2 26 197-222 27-52 (228)
293 2q3h_A RAS homolog gene family 94.8 0.018 6.1E-07 44.5 3.1 26 198-223 19-44 (201)
294 3tkl_A RAS-related protein RAB 94.8 0.017 5.8E-07 44.3 3.0 25 199-223 16-40 (196)
295 2b6h_A ADP-ribosylation factor 94.7 0.017 5.9E-07 44.5 3.0 24 199-222 29-52 (192)
296 3m6a_A ATP-dependent protease 94.7 0.014 4.8E-07 53.0 2.8 50 162-222 82-131 (543)
297 3lv8_A DTMP kinase, thymidylat 94.7 0.027 9.2E-07 45.5 4.2 37 199-236 27-63 (236)
298 2o52_A RAS-related protein RAB 94.7 0.018 6.1E-07 44.7 3.1 24 199-222 25-48 (200)
299 3oes_A GTPase rhebl1; small GT 94.7 0.017 5.7E-07 44.8 2.9 26 198-223 23-48 (201)
300 2dr3_A UPF0273 protein PH0284; 94.7 0.017 5.9E-07 46.1 3.1 23 199-221 23-45 (247)
301 1gwn_A RHO-related GTP-binding 94.7 0.017 5.7E-07 45.3 2.9 24 199-222 28-51 (205)
302 2yv5_A YJEQ protein; hydrolase 94.7 0.018 6E-07 48.3 3.2 21 200-220 166-186 (302)
303 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.018 6.3E-07 48.6 3.2 34 199-237 123-156 (331)
304 2dpy_A FLII, flagellum-specifi 94.7 0.016 5.3E-07 51.3 2.9 24 199-222 157-180 (438)
305 2il1_A RAB12; G-protein, GDP, 94.7 0.017 5.9E-07 44.4 2.9 25 199-223 26-50 (192)
306 3euj_A Chromosome partition pr 94.7 0.018 6E-07 51.5 3.2 22 200-221 30-51 (483)
307 3reg_A RHO-like small GTPase; 94.7 0.018 6.1E-07 44.3 3.0 25 199-223 23-47 (194)
308 1zd9_A ADP-ribosylation factor 94.7 0.019 6.5E-07 43.9 3.1 24 199-222 22-45 (188)
309 2rcn_A Probable GTPase ENGC; Y 94.7 0.019 6.4E-07 49.3 3.2 24 200-223 216-239 (358)
310 3bk7_A ABC transporter ATP-bin 94.7 0.018 6E-07 53.1 3.2 23 200-222 383-405 (607)
311 2ew1_A RAS-related protein RAB 94.6 0.018 6.1E-07 45.0 2.9 24 199-222 26-49 (201)
312 2j1l_A RHO-related GTP-binding 94.6 0.019 6.6E-07 45.0 3.0 24 199-222 34-57 (214)
313 3iev_A GTP-binding protein ERA 94.6 0.021 7.2E-07 47.9 3.4 27 196-222 7-33 (308)
314 1z06_A RAS-related protein RAB 94.6 0.019 6.5E-07 43.9 2.9 25 198-222 19-43 (189)
315 1x3s_A RAS-related protein RAB 94.6 0.019 6.6E-07 43.8 3.0 23 200-222 16-38 (195)
316 2p5s_A RAS and EF-hand domain 94.6 0.019 6.6E-07 44.4 2.9 26 197-222 26-51 (199)
317 2qag_C Septin-7; cell cycle, c 94.6 0.018 6.3E-07 50.5 3.0 21 202-222 34-54 (418)
318 3cr8_A Sulfate adenylyltranfer 94.6 0.015 5.2E-07 52.8 2.6 24 199-222 369-392 (552)
319 2h17_A ADP-ribosylation factor 94.5 0.02 6.8E-07 43.5 2.9 26 197-222 19-44 (181)
320 2gf0_A GTP-binding protein DI- 94.5 0.019 6.6E-07 44.0 2.9 25 198-222 7-31 (199)
321 2ffh_A Protein (FFH); SRP54, s 94.5 0.024 8.2E-07 49.8 3.7 25 198-222 97-121 (425)
322 1f2t_A RAD50 ABC-ATPase; DNA d 94.5 0.026 9E-07 42.0 3.5 22 199-220 23-44 (149)
323 3j16_B RLI1P; ribosome recycli 94.5 0.019 6.6E-07 52.8 3.2 24 199-222 103-126 (608)
324 3dz8_A RAS-related protein RAB 94.5 0.019 6.4E-07 44.1 2.7 24 199-222 23-46 (191)
325 2bcg_Y Protein YP2, GTP-bindin 94.5 0.02 6.7E-07 44.5 2.9 26 197-222 6-31 (206)
326 3j16_B RLI1P; ribosome recycli 94.5 0.02 6.7E-07 52.8 3.2 23 200-222 379-401 (608)
327 2fv8_A H6, RHO-related GTP-bin 94.5 0.02 7E-07 44.6 2.9 23 200-222 26-48 (207)
328 3bk7_A ABC transporter ATP-bin 94.5 0.02 6.9E-07 52.7 3.2 24 199-222 117-140 (607)
329 2atx_A Small GTP binding prote 94.4 0.022 7.6E-07 43.7 2.9 24 199-222 18-41 (194)
330 4dhe_A Probable GTP-binding pr 94.4 0.018 6.3E-07 45.2 2.4 27 197-223 27-53 (223)
331 1u0l_A Probable GTPase ENGC; p 94.4 0.023 8E-07 47.5 3.2 23 200-222 170-192 (301)
332 2hup_A RAS-related protein RAB 94.4 0.023 8E-07 44.1 3.0 25 198-222 28-52 (201)
333 2f7s_A C25KG, RAS-related prot 94.3 0.026 9.1E-07 44.1 3.3 24 199-222 25-48 (217)
334 2gco_A H9, RHO-related GTP-bin 94.3 0.023 8E-07 44.0 2.9 24 199-222 25-48 (201)
335 3cph_A RAS-related protein SEC 94.3 0.024 8.1E-07 44.1 2.9 25 198-222 19-43 (213)
336 3b60_A Lipid A export ATP-bind 94.3 0.023 8E-07 52.0 3.2 24 199-222 369-392 (582)
337 2x77_A ADP-ribosylation factor 94.3 0.02 6.9E-07 43.7 2.4 24 199-222 22-45 (189)
338 1tue_A Replication protein E1; 94.3 0.017 5.8E-07 45.6 1.9 24 199-222 58-81 (212)
339 2j0v_A RAC-like GTP-binding pr 94.3 0.025 8.4E-07 44.1 2.9 25 198-222 8-32 (212)
340 1r6b_X CLPA protein; AAA+, N-t 94.2 0.045 1.5E-06 51.6 5.1 53 162-222 459-511 (758)
341 2fu5_C RAS-related protein RAB 94.2 0.015 5.1E-07 44.1 1.5 26 197-222 6-31 (183)
342 1qvr_A CLPB protein; coiled co 94.2 0.045 1.5E-06 52.4 5.1 53 162-222 559-611 (854)
343 3bh0_A DNAB-like replicative h 94.2 0.045 1.5E-06 46.0 4.6 38 199-238 68-105 (315)
344 4gzl_A RAS-related C3 botulinu 94.2 0.032 1.1E-06 43.4 3.4 24 199-222 30-53 (204)
345 2xtp_A GTPase IMAP family memb 94.2 0.036 1.2E-06 44.9 3.9 26 197-222 20-45 (260)
346 3q3j_B RHO-related GTP-binding 94.2 0.027 9.1E-07 44.3 2.9 24 199-222 27-50 (214)
347 3b5x_A Lipid A export ATP-bind 94.2 0.025 8.7E-07 51.7 3.2 24 199-222 369-392 (582)
348 2g3y_A GTP-binding protein GEM 94.1 0.029 9.9E-07 44.3 3.1 23 199-221 37-59 (211)
349 1fx0_B ATP synthase beta chain 94.1 0.056 1.9E-06 48.2 5.2 50 199-249 165-215 (498)
350 3gmt_A Adenylate kinase; ssgci 94.1 0.026 9E-07 45.3 2.8 25 197-221 6-30 (230)
351 2qtf_A Protein HFLX, GTP-bindi 94.1 0.031 1.1E-06 48.1 3.4 26 198-223 178-203 (364)
352 1h65_A Chloroplast outer envel 94.0 0.06 2E-06 44.0 4.8 25 199-223 39-63 (270)
353 1t9h_A YLOQ, probable GTPase E 94.0 0.013 4.6E-07 49.2 0.9 23 200-222 174-196 (307)
354 3def_A T7I23.11 protein; chlor 93.9 0.063 2.1E-06 43.7 4.8 25 199-223 36-60 (262)
355 2ck3_D ATP synthase subunit be 93.9 0.053 1.8E-06 48.2 4.5 50 199-249 153-203 (482)
356 2qag_A Septin-2, protein NEDD5 93.8 0.028 9.7E-07 48.3 2.7 22 201-222 39-60 (361)
357 2yl4_A ATP-binding cassette SU 93.8 0.024 8.1E-07 52.1 2.3 24 199-222 370-393 (595)
358 1xp8_A RECA protein, recombina 93.8 0.062 2.1E-06 46.2 4.8 44 199-244 74-117 (366)
359 3lxw_A GTPase IMAP family memb 93.8 0.038 1.3E-06 44.7 3.3 25 199-223 21-45 (247)
360 3ch4_B Pmkase, phosphomevalona 93.8 0.053 1.8E-06 42.6 3.9 25 197-221 9-33 (202)
361 3t5d_A Septin-7; GTP-binding p 93.8 0.033 1.1E-06 45.7 2.9 24 199-222 8-31 (274)
362 2axn_A 6-phosphofructo-2-kinas 93.8 0.042 1.4E-06 49.6 3.8 25 197-221 33-57 (520)
363 2qmh_A HPR kinase/phosphorylas 93.7 0.042 1.4E-06 43.1 3.2 24 199-222 34-57 (205)
364 3cpj_B GTP-binding protein YPT 93.7 0.036 1.2E-06 43.7 2.9 24 199-222 13-36 (223)
365 2oap_1 GSPE-2, type II secreti 93.7 0.033 1.1E-06 50.2 2.9 22 200-221 261-282 (511)
366 4dkx_A RAS-related protein RAB 93.7 0.038 1.3E-06 43.9 2.9 22 201-222 15-36 (216)
367 1ypw_A Transitional endoplasmi 93.6 0.034 1.2E-06 52.9 3.0 57 162-222 478-534 (806)
368 3qf4_B Uncharacterized ABC tra 93.6 0.029 9.8E-07 51.6 2.4 24 199-222 381-404 (598)
369 2r6a_A DNAB helicase, replicat 93.6 0.72 2.4E-05 40.6 11.4 39 199-238 203-241 (454)
370 3fkq_A NTRC-like two-domain pr 93.6 0.053 1.8E-06 46.6 4.0 25 197-221 141-166 (373)
371 4a82_A Cystic fibrosis transme 93.5 0.025 8.6E-07 51.7 1.9 24 199-222 367-390 (578)
372 3v9p_A DTMP kinase, thymidylat 93.5 0.03 1E-06 44.9 2.2 24 199-222 25-48 (227)
373 1u0j_A DNA replication protein 93.5 0.091 3.1E-06 43.1 5.0 23 199-221 104-126 (267)
374 2o5v_A DNA replication and rep 93.4 0.056 1.9E-06 46.4 3.7 23 199-221 26-48 (359)
375 1tf7_A KAIC; homohexamer, hexa 93.4 0.042 1.4E-06 49.6 3.1 21 199-219 39-59 (525)
376 3f9v_A Minichromosome maintena 93.4 0.032 1.1E-06 51.2 2.4 22 201-222 329-350 (595)
377 1m8p_A Sulfate adenylyltransfe 93.4 0.055 1.9E-06 49.4 3.9 25 198-222 395-419 (573)
378 2aka_B Dynamin-1; fusion prote 93.4 0.13 4.4E-06 42.3 5.9 27 197-223 24-50 (299)
379 1x6v_B Bifunctional 3'-phospho 93.4 0.058 2E-06 49.7 4.0 24 198-221 51-74 (630)
380 3qf4_A ABC transporter, ATP-bi 93.3 0.033 1.1E-06 51.0 2.4 24 199-222 369-392 (587)
381 2yc2_C IFT27, small RAB-relate 93.3 0.019 6.3E-07 44.4 0.6 23 200-222 21-43 (208)
382 1sky_E F1-ATPase, F1-ATP synth 93.3 0.061 2.1E-06 47.8 3.9 41 200-241 152-192 (473)
383 1mky_A Probable GTP-binding pr 93.3 0.095 3.2E-06 46.1 5.2 54 164-223 151-204 (439)
384 1bif_A 6-phosphofructo-2-kinas 93.3 0.051 1.8E-06 48.3 3.5 24 199-222 39-62 (469)
385 1g8f_A Sulfate adenylyltransfe 93.3 0.074 2.5E-06 47.8 4.5 26 197-222 393-418 (511)
386 3qks_A DNA double-strand break 93.3 0.06 2.1E-06 42.2 3.5 22 199-220 23-44 (203)
387 4djt_A GTP-binding nuclear pro 93.2 0.023 7.9E-07 44.5 1.0 24 199-222 11-34 (218)
388 3ice_A Transcription terminati 93.1 0.072 2.5E-06 46.2 3.9 42 199-241 174-216 (422)
389 2iw3_A Elongation factor 3A; a 93.1 0.051 1.8E-06 52.6 3.3 23 199-221 461-483 (986)
390 3szr_A Interferon-induced GTP- 93.1 0.033 1.1E-06 51.3 1.9 26 197-222 43-68 (608)
391 3io5_A Recombination and repai 93.1 0.13 4.3E-06 43.5 5.3 43 200-244 29-73 (333)
392 3qkt_A DNA double-strand break 93.0 0.069 2.4E-06 45.3 3.7 22 199-220 23-44 (339)
393 1ni3_A YCHF GTPase, YCHF GTP-b 93.0 0.054 1.8E-06 47.1 3.0 24 199-222 20-43 (392)
394 1jwy_B Dynamin A GTPase domain 92.9 0.057 2E-06 44.9 3.0 26 197-222 22-47 (315)
395 3k9g_A PF-32 protein; ssgcid, 92.9 0.064 2.2E-06 43.6 3.2 25 197-221 25-50 (267)
396 3th5_A RAS-related C3 botulinu 92.0 0.019 6.6E-07 44.5 0.0 24 199-222 30-53 (204)
397 3gj0_A GTP-binding nuclear pro 92.8 0.043 1.5E-06 43.1 2.0 21 199-219 15-35 (221)
398 4b3f_X DNA-binding protein smu 92.8 0.12 4.2E-06 47.8 5.3 44 201-248 207-251 (646)
399 1tf7_A KAIC; homohexamer, hexa 92.8 0.058 2E-06 48.7 3.1 24 199-222 281-304 (525)
400 1udx_A The GTP-binding protein 92.7 0.042 1.4E-06 48.2 2.0 24 199-222 157-180 (416)
401 1qhl_A Protein (cell division 92.7 0.0096 3.3E-07 47.8 -2.0 22 200-221 28-49 (227)
402 3qf7_A RAD50; ABC-ATPase, ATPa 92.7 0.074 2.5E-06 45.7 3.5 22 199-220 23-44 (365)
403 1w1w_A Structural maintenance 92.7 0.067 2.3E-06 46.9 3.3 23 199-221 26-48 (430)
404 2iw3_A Elongation factor 3A; a 92.6 0.043 1.5E-06 53.1 2.0 23 200-222 700-722 (986)
405 2hjg_A GTP-binding protein ENG 92.6 0.2 6.7E-06 44.0 6.1 27 197-223 173-199 (436)
406 2gno_A DNA polymerase III, gam 92.4 0.14 4.7E-06 42.9 4.7 23 199-221 18-40 (305)
407 1e69_A Chromosome segregation 92.3 0.057 1.9E-06 45.5 2.2 21 200-220 25-45 (322)
408 3ez2_A Plasmid partition prote 92.3 0.094 3.2E-06 45.4 3.6 25 197-221 106-131 (398)
409 3o47_A ADP-ribosylation factor 92.1 0.072 2.5E-06 45.0 2.7 23 201-223 167-189 (329)
410 4aby_A DNA repair protein RECN 92.1 0.031 1.1E-06 48.6 0.4 20 201-220 62-81 (415)
411 2oze_A ORF delta'; para, walke 92.1 0.067 2.3E-06 44.2 2.4 23 199-221 34-59 (298)
412 4i1u_A Dephospho-COA kinase; s 92.0 0.11 3.9E-06 41.0 3.5 26 196-221 6-31 (210)
413 3hdt_A Putative kinase; struct 92.0 0.1 3.6E-06 41.6 3.3 23 199-221 14-36 (223)
414 3ux8_A Excinuclease ABC, A sub 91.9 0.055 1.9E-06 50.4 1.8 20 200-219 349-368 (670)
415 3io3_A DEHA2D07832P; chaperone 91.9 0.11 3.6E-06 44.5 3.4 24 198-221 17-40 (348)
416 2zts_A Putative uncharacterize 91.8 0.1 3.5E-06 41.5 3.1 23 199-221 30-52 (251)
417 2gks_A Bifunctional SAT/APS ki 91.7 0.11 3.7E-06 47.2 3.5 25 198-222 371-395 (546)
418 3upu_A ATP-dependent DNA helic 91.7 0.15 5.3E-06 45.0 4.4 22 201-222 47-68 (459)
419 1f5n_A Interferon-induced guan 91.7 0.16 5.6E-06 46.5 4.6 27 197-223 36-62 (592)
420 1zcb_A G alpha I/13; GTP-bindi 91.6 0.1 3.4E-06 44.9 2.9 23 197-219 31-53 (362)
421 2ohf_A Protein OLA1, GTP-bindi 91.5 0.1 3.5E-06 45.3 3.0 23 200-222 23-45 (396)
422 3l0i_B RAS-related protein RAB 91.3 0.023 7.8E-07 43.9 -1.2 24 199-222 33-56 (199)
423 3ux8_A Excinuclease ABC, A sub 91.3 0.092 3.1E-06 48.8 2.7 18 199-216 44-61 (670)
424 1ewq_A DNA mismatch repair pro 91.3 0.11 3.6E-06 49.2 3.0 23 199-221 576-598 (765)
425 2ph1_A Nucleotide-binding prot 91.3 0.12 4E-06 42.0 3.0 23 199-221 18-41 (262)
426 3g5u_A MCG1178, multidrug resi 91.3 0.1 3.6E-06 52.2 3.2 24 199-222 1059-1082(1284)
427 4dcu_A GTP-binding protein ENG 91.3 0.11 3.9E-06 45.8 3.1 24 199-222 23-46 (456)
428 3cnl_A YLQF, putative uncharac 91.2 0.13 4.5E-06 42.0 3.2 24 200-223 100-123 (262)
429 2wkq_A NPH1-1, RAS-related C3 91.1 0.12 3.9E-06 43.1 2.9 24 199-222 155-178 (332)
430 3t34_A Dynamin-related protein 91.1 0.15 5E-06 43.6 3.6 25 198-222 33-57 (360)
431 1wb9_A DNA mismatch repair pro 91.1 0.12 3.9E-06 49.2 3.1 23 199-221 607-629 (800)
432 1a5t_A Delta prime, HOLB; zinc 91.1 0.19 6.4E-06 42.5 4.2 23 199-221 24-46 (334)
433 3c5h_A Glucocorticoid receptor 91.1 0.13 4.5E-06 41.6 3.1 24 198-221 18-50 (255)
434 3vr4_D V-type sodium ATPase su 91.0 0.11 3.8E-06 45.9 2.7 40 200-241 152-195 (465)
435 3vr4_A V-type sodium ATPase ca 91.0 0.13 4.5E-06 46.6 3.2 47 199-249 232-279 (600)
436 4a1f_A DNAB helicase, replicat 90.8 0.21 7.1E-06 42.5 4.1 47 199-249 46-92 (338)
437 3tqf_A HPR(Ser) kinase; transf 90.7 0.15 5.1E-06 39.1 2.8 23 199-221 16-38 (181)
438 3dpu_A RAB family protein; roc 90.7 0.14 4.7E-06 46.3 3.1 25 199-223 41-65 (535)
439 3vkw_A Replicase large subunit 90.6 0.2 6.9E-06 44.1 4.0 25 197-221 159-183 (446)
440 2dy1_A Elongation factor G; tr 90.6 0.15 5.2E-06 47.4 3.4 24 197-220 7-30 (665)
441 3cf2_A TER ATPase, transitiona 90.6 0.2 7E-06 47.5 4.2 57 162-222 478-534 (806)
442 3l0o_A Transcription terminati 90.5 0.2 7E-06 43.4 3.8 42 199-241 175-217 (427)
443 3bfv_A CAPA1, CAPB2, membrane 90.5 0.2 6.8E-06 41.1 3.7 25 197-221 80-105 (271)
444 3e1s_A Exodeoxyribonuclease V, 90.5 0.29 9.8E-06 44.7 5.1 23 200-222 205-227 (574)
445 3iqw_A Tail-anchored protein t 90.4 0.19 6.4E-06 42.7 3.6 23 199-221 16-38 (334)
446 3cio_A ETK, tyrosine-protein k 90.3 0.19 6.6E-06 41.8 3.5 24 198-221 103-127 (299)
447 3g5u_A MCG1178, multidrug resi 90.2 0.14 4.6E-06 51.4 2.9 24 199-222 416-439 (1284)
448 2gk6_A Regulator of nonsense t 90.1 0.42 1.4E-05 44.0 5.9 46 201-248 197-242 (624)
449 3tr5_A RF-3, peptide chain rel 90.1 0.17 5.9E-06 45.7 3.2 24 197-220 11-34 (528)
450 3ez9_A Para; DNA binding, wing 90.0 0.1 3.5E-06 45.2 1.6 24 197-220 109-133 (403)
451 1puj_A YLQF, conserved hypothe 90.0 0.56 1.9E-05 38.6 6.0 25 199-223 120-144 (282)
452 2qpt_A EH domain-containing pr 89.9 0.21 7E-06 45.4 3.6 27 197-223 63-89 (550)
453 3mfy_A V-type ATP synthase alp 89.8 0.23 7.9E-06 44.9 3.7 47 199-249 227-274 (588)
454 1of1_A Thymidine kinase; trans 89.7 0.21 7.1E-06 43.1 3.2 25 198-222 48-72 (376)
455 3zq6_A Putative arsenical pump 89.6 0.25 8.7E-06 41.5 3.7 22 200-221 15-36 (324)
456 3ug7_A Arsenical pump-driving 89.6 0.26 9E-06 41.9 3.9 23 199-221 26-48 (349)
457 4f4c_A Multidrug resistance pr 89.6 0.16 5.6E-06 50.9 2.9 24 199-222 444-467 (1321)
458 4f4c_A Multidrug resistance pr 89.6 0.11 3.9E-06 52.1 1.7 23 199-221 1105-1127(1321)
459 3thx_A DNA mismatch repair pro 89.5 0.18 6.2E-06 48.7 3.0 21 199-219 662-682 (934)
460 3q5d_A Atlastin-1; G protein, 89.5 0.36 1.2E-05 42.6 4.7 25 197-221 65-89 (447)
461 1lnz_A SPO0B-associated GTP-bi 89.4 0.15 5.3E-06 43.3 2.2 23 200-222 159-181 (342)
462 2q6t_A DNAB replication FORK h 89.3 0.22 7.4E-06 43.9 3.2 39 199-238 200-238 (444)
463 3thx_B DNA mismatch repair pro 89.3 0.15 5E-06 49.2 2.2 22 199-220 673-694 (918)
464 2b8t_A Thymidine kinase; deoxy 89.2 0.25 8.7E-06 39.3 3.2 23 199-221 12-34 (223)
465 2x2e_A Dynamin-1; nitration, h 89.1 0.26 8.8E-06 41.9 3.4 26 197-222 29-54 (353)
466 2ygr_A Uvrabc system protein A 89.0 0.14 4.8E-06 49.5 1.8 20 200-219 669-688 (993)
467 3gqb_A V-type ATP synthase alp 88.8 0.22 7.6E-06 45.0 2.9 39 199-241 221-259 (578)
468 4dcu_A GTP-binding protein ENG 88.8 0.57 2E-05 41.3 5.6 26 197-222 193-218 (456)
469 2o8b_B DNA mismatch repair pro 88.8 0.24 8.1E-06 48.4 3.3 21 199-219 789-809 (1022)
470 2r9v_A ATP synthase subunit al 88.7 0.48 1.7E-05 42.4 4.9 46 199-248 175-223 (515)
471 3bgw_A DNAB-like replicative h 88.7 0.32 1.1E-05 42.9 3.9 38 199-238 197-234 (444)
472 2xtz_A Guanine nucleotide-bind 88.6 0.24 8.3E-06 42.3 2.9 21 199-219 9-29 (354)
473 2h5e_A Peptide chain release f 88.5 0.26 9E-06 44.5 3.2 24 198-221 12-35 (529)
474 2qe7_A ATP synthase subunit al 88.4 0.45 1.5E-05 42.5 4.5 40 199-242 162-203 (502)
475 3llm_A ATP-dependent RNA helic 88.3 0.5 1.7E-05 37.5 4.4 21 200-220 77-97 (235)
476 3auy_A DNA double-strand break 88.3 0.35 1.2E-05 41.5 3.7 22 199-220 25-46 (371)
477 1ihu_A Arsenical pump-driving 88.2 0.29 1E-05 44.6 3.4 22 199-220 8-29 (589)
478 2rdo_7 EF-G, elongation factor 88.2 0.3 1E-05 45.7 3.5 25 197-221 8-32 (704)
479 2vf7_A UVRA2, excinuclease ABC 88.1 0.14 4.9E-06 48.8 1.3 21 200-220 524-545 (842)
480 3dzd_A Transcriptional regulat 88.1 0.8 2.7E-05 39.2 5.9 46 162-222 130-175 (368)
481 3sjy_A Translation initiation 88.1 0.29 9.9E-06 42.5 3.1 25 197-221 6-30 (403)
482 4ag6_A VIRB4 ATPase, type IV s 88.1 0.28 9.5E-06 42.3 3.0 24 199-222 35-58 (392)
483 2woo_A ATPase GET3; tail-ancho 88.0 0.35 1.2E-05 40.7 3.5 23 199-221 19-41 (329)
484 3la6_A Tyrosine-protein kinase 87.9 0.38 1.3E-05 39.8 3.6 25 197-221 90-115 (286)
485 2r6f_A Excinuclease ABC subuni 87.9 0.14 4.7E-06 49.5 0.9 20 200-219 651-670 (972)
486 2ck3_A ATP synthase subunit al 87.8 0.46 1.6E-05 42.5 4.2 50 199-248 162-218 (510)
487 2c61_A A-type ATP synthase non 87.5 0.23 7.7E-06 44.1 2.0 43 199-241 152-196 (469)
488 3geh_A MNME, tRNA modification 87.5 0.29 9.8E-06 43.4 2.7 22 201-222 226-247 (462)
489 1w36_D RECD, exodeoxyribonucle 87.2 0.31 1.1E-05 44.8 2.9 22 200-221 165-186 (608)
490 3lvq_E ARF-GAP with SH3 domain 87.0 0.33 1.1E-05 43.2 2.9 24 200-223 323-346 (497)
491 1fx0_A ATP synthase alpha chai 86.9 0.49 1.7E-05 42.3 3.8 46 199-248 163-211 (507)
492 1zun_B Sulfate adenylate trans 86.9 0.38 1.3E-05 42.1 3.2 25 197-221 22-46 (434)
493 1ko7_A HPR kinase/phosphatase; 86.7 0.38 1.3E-05 40.4 2.9 22 200-221 145-166 (314)
494 2xex_A Elongation factor G; GT 86.6 0.33 1.1E-05 45.3 2.8 25 197-221 8-32 (693)
495 3gqb_B V-type ATP synthase bet 86.4 0.25 8.7E-06 43.6 1.7 43 199-241 147-198 (464)
496 2woj_A ATPase GET3; tail-ancho 86.4 0.48 1.6E-05 40.4 3.5 23 199-221 18-40 (354)
497 1ny5_A Transcriptional regulat 86.4 0.57 2E-05 40.4 4.0 46 162-222 138-183 (387)
498 3cmw_A Protein RECA, recombina 86.1 0.53 1.8E-05 48.2 4.1 42 200-243 1083-1124(1706)
499 3gee_A MNME, tRNA modification 86.1 0.32 1.1E-05 43.3 2.3 21 202-222 236-256 (476)
500 1osn_A Thymidine kinase, VZV-T 86.1 0.38 1.3E-05 40.9 2.6 27 197-223 10-37 (341)
No 1
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.72 E-value=9.2e-18 Score=122.33 Aligned_cols=80 Identities=20% Similarity=0.480 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHhhchhhHHH
Q 046918 4 VIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKR--QMKENAVRVWLDDLKHASYDMEDVLD 81 (251)
Q Consensus 4 ~~vs~~~~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~l~~~a~d~eD~ld 81 (251)
|+++++++||.++ +.+|+.++.+++++++.|+++|..|+++|.+++.+ +..++.++.|+++||+++||+||+||
T Consensus 1 a~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888887 67899999999999999999999999999999987 55789999999999999999999999
Q ss_pred hhhHHH
Q 046918 82 EWNTAI 87 (251)
Q Consensus 82 ~~~~~~ 87 (251)
+|.++.
T Consensus 77 ~f~~~~ 82 (115)
T 3qfl_A 77 KFLVQV 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999765
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.63 E-value=2.6e-16 Score=144.27 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=66.1
Q ss_pred eccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc--CcccccCCCceEEEEeCCCC
Q 046918 164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN--DNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 164 ~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~--d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
+||+.++++|.++|.... ...++||+|+||||+||||||+.+|+ |.+++.+|+.++||+||+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~--------------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~ 196 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC--------------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTA 196 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT--------------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCS
T ss_pred CCchHHHHHHHHHHhccc--------------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCC
Confidence 699999999999997653 24589999999999999999999998 78899999999999999985
Q ss_pred --CHHHHHHHhC
Q 046918 242 --DDIRIAKAIL 251 (251)
Q Consensus 242 --~~~~i~~~Il 251 (251)
++.+++++|+
T Consensus 197 ~~~~~~~~~~il 208 (549)
T 2a5y_B 197 PKSTFDLFTDIL 208 (549)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 8888888764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.35 E-value=3.4e-13 Score=129.22 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=64.2
Q ss_pred eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCc-eEEEEeCCCC
Q 046918 163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDK-KIWVCVSEPF 241 (251)
Q Consensus 163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~-~~wV~Vs~~~ 241 (251)
.+||+.+.++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|+. ++||+|++.+
T Consensus 130 ~VGRe~eLeeL~elL~~~d----------------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~ 193 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR----------------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC----------------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS
T ss_pred CCCcHHHHHHHHHHHhccC----------------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC
Confidence 5999999999999998533 2789999999999999999999998889999997 8999999999
Q ss_pred CHHHHHHHh
Q 046918 242 DDIRIAKAI 250 (251)
Q Consensus 242 ~~~~i~~~I 250 (251)
+...++..|
T Consensus 194 d~~~IL~~L 202 (1221)
T 1vt4_I 194 SPETVLEML 202 (1221)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988876654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.28 E-value=6.1e-12 Score=124.43 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=56.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCccc-ccCC-CceEEEEeCC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV-SAHF-DKKIWVCVSE 239 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v-~~~F-d~~~wV~Vs~ 239 (251)
.++||+.++++|.++|...+ ...++|+|+||||+||||||+++|++.++ ..+| +.+.||++++
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~---------------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN---------------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT---------------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred eeccHHHHHHHHHHHHhhcc---------------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 69999999999999997654 45899999999999999999999998654 4556 5667999999
Q ss_pred CCC
Q 046918 240 PFD 242 (251)
Q Consensus 240 ~~~ 242 (251)
.++
T Consensus 190 ~~~ 192 (1249)
T 3sfz_A 190 QDK 192 (1249)
T ss_dssp CCH
T ss_pred cCc
Confidence 654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.20 E-value=3.1e-11 Score=111.16 Aligned_cols=64 Identities=27% Similarity=0.356 Sum_probs=56.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCccc-ccCC-CceEEEEeCC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV-SAHF-DKKIWVCVSE 239 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v-~~~F-d~~~wV~Vs~ 239 (251)
.++||+.+.++|.++|.... ...++|+|+||||+||||||+.+|++..+ ..+| +.++|+++++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLK---------------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTST---------------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred eecccHHHHHHHHHHHhccc---------------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 69999999999999997543 34789999999999999999999998766 7889 5899999987
Q ss_pred C
Q 046918 240 P 240 (251)
Q Consensus 240 ~ 240 (251)
.
T Consensus 190 ~ 190 (591)
T 1z6t_A 190 Q 190 (591)
T ss_dssp C
T ss_pred C
Confidence 6
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.29 E-value=5.2e-07 Score=78.88 Aligned_cols=80 Identities=24% Similarity=0.222 Sum_probs=51.7
Q ss_pred ceeccchhHHHHHHHh-cCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccc---cCCC-ceEEEE
Q 046918 162 EVRGREHLQIKVANLL-MSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS---AHFD-KKIWVC 236 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~---~~Fd-~~~wV~ 236 (251)
.++||+.+.+.+.++| ..... + .......-+|+|+|++|+|||||++.+++..... ..|+ ..+|+.
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~-------~--~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLS-------G--AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHT-------S--SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCChHHHHHHHHHHHhHHHhc-------C--CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 6999999999999988 42110 0 0001223344449999999999999999853221 1233 246777
Q ss_pred eCCCCCHHHHHHHh
Q 046918 237 VSEPFDDIRIAKAI 250 (251)
Q Consensus 237 Vs~~~~~~~i~~~I 250 (251)
.+...+...+++.|
T Consensus 94 ~~~~~~~~~~~~~l 107 (412)
T 1w5s_A 94 AFNAPNLYTILSLI 107 (412)
T ss_dssp GGGCCSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 66777777776654
No 7
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.18 E-value=1.2e-06 Score=75.59 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=51.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCC---ceEEEEeC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFD---KKIWVCVS 238 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd---~~~wV~Vs 238 (251)
.++||+.+.+.+.+++...-. ......+.|+|++|+|||||++.+++. ....|+ ..+|+..+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~-------------~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYR-------------EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGG-------------TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHH
T ss_pred CCCChHHHHHHHHHHHHHHHc-------------CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECC
Confidence 699999999999998864210 123568899999999999999999984 333331 34677655
Q ss_pred CCCCHHHHHHH
Q 046918 239 EPFDDIRIAKA 249 (251)
Q Consensus 239 ~~~~~~~i~~~ 249 (251)
...+...++..
T Consensus 86 ~~~~~~~~~~~ 96 (386)
T 2qby_A 86 QIDTPYRVLAD 96 (386)
T ss_dssp HHCSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 54454444443
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.10 E-value=2.1e-06 Score=73.06 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=45.0
Q ss_pred cccCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEE
Q 046918 155 SFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIW 234 (251)
Q Consensus 155 ~~~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~w 234 (251)
+..... .++||+.+.+.+.+++.. . +++.|+|+.|+|||||++.+.+.. + .+|
T Consensus 7 ~~~~~~-~~~gR~~el~~L~~~l~~-----------------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~ 59 (350)
T 2qen_A 7 PKTRRE-DIFDREEESRKLEESLEN-----------------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GIL 59 (350)
T ss_dssp CCCSGG-GSCSCHHHHHHHHHHHHH-----------------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEE
T ss_pred CCCChH-hcCChHHHHHHHHHHHhc-----------------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEE
Confidence 334445 799999999999998853 1 589999999999999999998742 2 567
Q ss_pred EEeCC
Q 046918 235 VCVSE 239 (251)
Q Consensus 235 V~Vs~ 239 (251)
+....
T Consensus 60 ~~~~~ 64 (350)
T 2qen_A 60 IDCRE 64 (350)
T ss_dssp EEHHH
T ss_pred EEeec
Confidence 76543
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.07 E-value=8.2e-06 Score=70.56 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=53.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHF-DKKIWVCVSEP 240 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F-d~~~wV~Vs~~ 240 (251)
.++||+.+.+.+.++|...-.+ . ....+.+.|+|+.|+|||||++.+.+. ..... -..+|+..+..
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~-------~----~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRN-------P----GHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIY 84 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHS-------T----TSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTC
T ss_pred CCCChHHHHHHHHHHHHHHHcC-------C----CCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccC
Confidence 6999999999999988652100 0 123458999999999999999999984 32221 23567777777
Q ss_pred CCHHHHHHHh
Q 046918 241 FDDIRIAKAI 250 (251)
Q Consensus 241 ~~~~~i~~~I 250 (251)
.+...++..+
T Consensus 85 ~~~~~~~~~l 94 (389)
T 1fnn_A 85 RNFTAIIGEI 94 (389)
T ss_dssp CSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7666665543
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.02 E-value=2.8e-06 Score=73.56 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=50.7
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccc----cCC--CceEEE
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS----AHF--DKKIWV 235 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~----~~F--d~~~wV 235 (251)
.++||+.+.+++.++|...-. ....+.+-|+|++|+||||||+.+++...-. ..+ -..+|+
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~-------------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVK-------------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHT-------------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHc-------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 699999999999887754210 1235689999999999999999999842111 112 245677
Q ss_pred EeCCCC-CHHHHHHH
Q 046918 236 CVSEPF-DDIRIAKA 249 (251)
Q Consensus 236 ~Vs~~~-~~~~i~~~ 249 (251)
..+... +...++..
T Consensus 88 ~~~~~~~~~~~~~~~ 102 (384)
T 2qby_B 88 NCREVGGTPQAVLSS 102 (384)
T ss_dssp EHHHHCSCHHHHHHH
T ss_pred ECccCCCCHHHHHHH
Confidence 765554 55444443
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.02 E-value=5e-06 Score=71.73 Aligned_cols=75 Identities=27% Similarity=0.296 Sum_probs=52.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCccccc---CCC-ceEEEEe
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSA---HFD-KKIWVCV 237 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~---~Fd-~~~wV~V 237 (251)
.++||+.+.+.+..+|...-. ......+.|+|++|+||||||+.+++...-.. ..+ ..+|+..
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~-------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALR-------------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTS-------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHHc-------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 699999999999998854310 12356788999999999999999998421110 012 3467777
Q ss_pred CCCCCHHHHHHH
Q 046918 238 SEPFDDIRIAKA 249 (251)
Q Consensus 238 s~~~~~~~i~~~ 249 (251)
+...+...++..
T Consensus 87 ~~~~~~~~~~~~ 98 (387)
T 2v1u_A 87 RHRETPYRVASA 98 (387)
T ss_dssp TTSCSHHHHHHH
T ss_pred CcCCCHHHHHHH
Confidence 766666555544
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.93 E-value=1.6e-05 Score=67.78 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=44.3
Q ss_pred cccCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEE
Q 046918 155 SFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIW 234 (251)
Q Consensus 155 ~~~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~w 234 (251)
+..... .++||+.+.+.+.+ +. . +++.|+|+.|+|||||++.+.+.. .. ..+|
T Consensus 8 ~~~~~~-~~~gR~~el~~L~~-l~------------------~--~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~ 60 (357)
T 2fna_A 8 PKDNRK-DFFDREKEIEKLKG-LR------------------A--PITLVLGLRRTGKSSIIKIGINEL--NL---PYIY 60 (357)
T ss_dssp CCCSGG-GSCCCHHHHHHHHH-TC------------------S--SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEE
T ss_pred CCCCHH-HhcChHHHHHHHHH-hc------------------C--CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEE
Confidence 333445 79999999999988 52 2 489999999999999999999852 22 2578
Q ss_pred EEeCC
Q 046918 235 VCVSE 239 (251)
Q Consensus 235 V~Vs~ 239 (251)
+....
T Consensus 61 ~~~~~ 65 (357)
T 2fna_A 61 LDLRK 65 (357)
T ss_dssp EEGGG
T ss_pred EEchh
Confidence 87664
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.93 E-value=9.3e-06 Score=62.61 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=37.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|++...+.+.+.+.... ...+-|+|+.|+||||||+.+.+.
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSS-----------------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCC-----------------CCceEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999986533 445679999999999999999884
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.87 E-value=2.8e-05 Score=61.35 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=37.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++...+.+.+++.... ...+-|+|+.|+||||||+.+.+.
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKN-----------------IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTC-----------------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHhCCC-----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999987544 233889999999999999999874
No 15
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.82 E-value=1.4e-05 Score=61.50 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=37.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|++.+.+.+.+.+.... ...+-|+|+.|+||||||+.+.+.
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~-----------------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRRT-----------------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSSS-----------------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHhCCC-----------------CCceEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999986533 345679999999999999999874
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.65 E-value=4.2e-05 Score=61.01 Aligned_cols=45 Identities=36% Similarity=0.547 Sum_probs=38.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+..++.... ...++.|+|++|+||||||+.+++.
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~----------------~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGR----------------IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTC----------------CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999886543 1347889999999999999999874
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=9.6e-05 Score=62.07 Aligned_cols=44 Identities=25% Similarity=0.408 Sum_probs=37.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+.+++.... .+.+-++|+.|+||||+|+.+.+.
T Consensus 22 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDGN-----------------MPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSCC-----------------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHcCC-----------------CCeEEEECcCCCCHHHHHHHHHHH
Confidence 68999999999999987644 233889999999999999999884
No 18
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.35 E-value=0.00024 Score=55.91 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=32.5
Q ss_pred cchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 166 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
++...+.+.+.+.... .....+|+|.|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~--------------~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK--------------TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC--------------CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--------------cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445677777776543 24468999999999999999999876
No 19
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.28 E-value=0.00015 Score=55.91 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-..+.|+|+.|+|||||++.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999884
No 20
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=0.0002 Score=60.27 Aligned_cols=44 Identities=27% Similarity=0.457 Sum_probs=37.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+.+++..+. ...+-++|+.|+||||+|+.+++.
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGS-----------------MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTC-----------------CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHcCC-----------------CCeEEEECcCCCCHHHHHHHHHHH
Confidence 68999999999999887544 334889999999999999999884
No 21
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.25 E-value=0.00017 Score=53.70 Aligned_cols=46 Identities=24% Similarity=0.181 Sum_probs=34.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|......++.+.+..-. ..... |-|+|..|+|||+||+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a--------------~~~~~-vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS--------------ETDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT--------------TCCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHh--------------CCCCC-EEEECCCCCCHHHHHHHHHHh
Confidence 57899888888888775322 11133 569999999999999999985
No 22
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.21 E-value=0.00032 Score=55.03 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
..+-|+|+.|+||||||+.+++. .......+++++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH
Confidence 67889999999999999999984 33333455666543
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.16 E-value=0.00034 Score=57.91 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=36.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+.+...-.....-. . -+.....-+-|+|+.|+||||||+.+.+.
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFE---K-VGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHH---H-HCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHH---h-cCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 689999999988887643100000000 0 00012445889999999999999999884
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00032 Score=59.73 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=37.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+..++.... ...+-++|+.|+||||||+.+.+.
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSAN-----------------LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTT-----------------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcCC-----------------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999886544 223789999999999999999885
No 25
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.15 E-value=0.00044 Score=54.69 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-.+|+|+|..|+|||||++.+..-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998763
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.14 E-value=0.00053 Score=54.75 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=27.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
...+-|+|+.|+||||||+.+.+. .........|+..+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 467889999999999999999884 22222344566554
No 27
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.12 E-value=0.00036 Score=62.39 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=36.7
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|++.+++.++..|.... ..-+-++|..|+||||||+.+.+.
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~-----------------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRT-----------------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSS-----------------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHhccC-----------------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999997643 223468999999999999998873
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.09 E-value=0.00056 Score=57.20 Aligned_cols=58 Identities=21% Similarity=0.154 Sum_probs=34.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCc-cCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTV-STGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+.+++....-+... ..+-.. ......+-|+|+.|+|||+||+.+.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~---~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAH---ETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCS---SCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCC---CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4889988888877655311000000 000000 123556889999999999999987774
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00027 Score=59.88 Aligned_cols=49 Identities=8% Similarity=0.023 Sum_probs=39.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.+.||+.+.++|...|...-. ......+-|+|+.|+|||++++.|.+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~-------------~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM-------------SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc-------------CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999887764320 1336778899999999999999999853
No 30
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.98 E-value=0.0002 Score=53.22 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=32.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|......++.+.+..-. ..... |-|+|..|+|||+||+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~--------------~~~~~-vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA--------------KRTSP-VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH--------------TCSSC-EEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHh--------------CCCCc-EEEECCCCccHHHHHHHHHHh
Confidence 57899888888877765322 01122 568999999999999999985
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.98 E-value=0.00064 Score=56.59 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=36.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+.+......... ..+ - ......+-|+|+.|+||||||+.+.+.
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~-~~~-~---~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPEL-FTG-L---RAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGG-SCG-G---GCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHH-Hhc-C---CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 6899998888888776321000000 000 0 012457889999999999999999884
No 32
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.97 E-value=0.00054 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
-.+|+|+|+.|+|||||++.+...+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 5789999999999999999997653
No 33
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.93 E-value=0.00051 Score=57.48 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=35.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+.+++..+. ...+-++|+.|+||||+|+.+.+.
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERKN-----------------IPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTTC-----------------CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhCCC-----------------CCeEEEECcCCcCHHHHHHHHHHH
Confidence 68999998888888775533 233889999999999999999874
No 34
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.92 E-value=0.00065 Score=56.96 Aligned_cols=57 Identities=23% Similarity=0.234 Sum_probs=35.7
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+++...-.....-.+ -+-.....+-++|+.|+||||||+.+.+.
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLK----FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHH----HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHH----cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 5888888887777765421000000000 00122557889999999999999999984
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.92 E-value=0.00074 Score=61.07 Aligned_cols=58 Identities=29% Similarity=0.303 Sum_probs=39.4
Q ss_pred ceeccchhHHHHHHHhcCCCCC---CCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSES---STVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+.++|...... .... .+. .+....+.+-|+|+.|+||||||+.+.+.
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~-~g~--~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKH-AGK--DGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCC-CCT--TSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccc-cCc--cCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999998752100 0000 000 00123568899999999999999999884
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.91 E-value=0.00052 Score=58.27 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=37.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+..++...... ......+-|+|+.|+||||||+.+.+.
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~------------~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKR------------NECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHT------------TSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhc------------CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999888888643100 122455789999999999999999873
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.89 E-value=0.0011 Score=56.84 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=35.2
Q ss_pred ceeccchhHHH---HHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIK---VANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++. +.+.+.... .....+-|+|+.|+|||+||+.+.+.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~---------------~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGK---------------IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTC---------------CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCC---------------CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 68999988766 455554433 22467889999999999999999984
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.88 E-value=0.0014 Score=53.17 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=34.0
Q ss_pred ceeccchhHHHHHHHhc---CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLM---SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+++. ..+. -...+ .....-+-++|+.|+||||||+.+.+.
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~---~~~~g-----~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPER---FLQLG-----AKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC--------------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHH---HHHcC-----CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 68899888777755442 2210 00000 122345779999999999999999884
No 39
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.88 E-value=0.00063 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 57999999999999999996553
No 40
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.86 E-value=0.00092 Score=57.27 Aligned_cols=45 Identities=36% Similarity=0.547 Sum_probs=37.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..++.+.+.+.... ....+-|+|+.|+||||||+.+.+.
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~----------------~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR----------------IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC----------------CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999886543 1346789999999999999998764
No 41
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.86 E-value=0.0012 Score=55.13 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|+|+|..|+|||||++.+..-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998774
No 42
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.84 E-value=0.00055 Score=58.41 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=33.5
Q ss_pred ceeccchhHHHHHHHh-cCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLL-MSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++|.+...+.+.+++ .... ...+.|+|+.|+|||||++.+.+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~-----------------~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRD-----------------LPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTC-----------------CCCEEEECSTTSSHHHHHHTHHH
T ss_pred HhcCCHHHHHHHHHHHhhCCC-----------------CCeEEEECCCCCCHHHHHHHHHH
Confidence 5789888888887776 3322 22289999999999999998776
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.82 E-value=0.00065 Score=57.15 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=36.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|++..+..+..++...... ......+-|+|+.|+||||||+.+++.
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~------------~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKAR------------KEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHH------------CSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHcc------------CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 6899998888888777531100 012356779999999999999999883
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.82 E-value=0.0012 Score=55.74 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=36.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.|.+.+...-.....-..+ ....+-+-++|+.|+|||+||+.+.+.
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~-----~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGN-----RKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTT-----CCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcC-----CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 68999998888887762110000000000 122456889999999999999999884
No 45
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.81 E-value=0.001 Score=57.13 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=36.7
Q ss_pred ceeccchhHHHHHHHhcCC---CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSG---SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+.+... .+- . .. ......-+-|+|+.|+||||||+.+.+.
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~-~--~~-----~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDI-F--TG-----LRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT-S--CG-----GGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHhhChHh-H--hh-----ccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 6899999998888776421 100 0 00 0122557889999999999999999873
No 46
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.81 E-value=0.00071 Score=57.62 Aligned_cols=49 Identities=29% Similarity=0.404 Sum_probs=33.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+-..+...... ...+..+.++|+.|+||||||+.+.+.
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~------------~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMR------------GEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHH------------TCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHhc------------CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4677766666655544322000 122567899999999999999999884
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.79 E-value=0.00074 Score=59.96 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=35.5
Q ss_pred ceeccchhH---HHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQ---IKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~---~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..+ ..+...+.... +..+-++|+.|+||||||+.|.+.
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~~-----------------~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAGH-----------------LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHTC-----------------CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhCCcHHHHhchHHHHHHHHcCC-----------------CcEEEEECCCCCcHHHHHHHHHHH
Confidence 578888777 56666665544 567889999999999999999984
No 48
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.78 E-value=0.00096 Score=52.32 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+|.|+|+.|+|||||++.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999998773
No 49
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.75 E-value=0.00091 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999866
No 50
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.75 E-value=0.00083 Score=52.65 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 51
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.74 E-value=0.0029 Score=49.85 Aligned_cols=44 Identities=25% Similarity=0.147 Sum_probs=32.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIA 247 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~ 247 (251)
-.++.|+|.+|+|||||+..+.. . .=..++|+.....++..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHH
Confidence 56999999999999999999987 1 12356777776655655543
No 52
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.72 E-value=0.0013 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.-.+|.|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999998764
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.70 E-value=0.00094 Score=64.07 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=37.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|++.+...+++.|.... ..-+-++|..|+||||||+.+.+.
T Consensus 171 ~viGr~~~i~~l~~~l~~~~-----------------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSS-----------------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCC-----------------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999997644 223578999999999999999874
No 54
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.69 E-value=0.0016 Score=53.54 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.6
Q ss_pred ceeccchhHHHHHH-------HhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVAN-------LLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~-------~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.....++++. .+.... .....-+-|+|+.|+|||+||+.+.+.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~--------------~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD--------------RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS--------------SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC--------------CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 57777776666655 333221 133667889999999999999999984
No 55
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.69 E-value=0.0014 Score=55.81 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=34.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+.-.+.+...+..+. +.-+.++|+.|+||||||+.+.+.
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~-----------------~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK-----------------LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC-----------------CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence 57788877788877776544 333889999999999999998763
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.69 E-value=0.0012 Score=62.38 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=36.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|++.+++.++..|.... ..-+-++|..|+||||+|+.+.+.
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~-----------------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRT-----------------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSS-----------------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHhCCC-----------------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999997644 223569999999999999998874
No 57
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.0016 Score=55.16 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=35.9
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.|.+.+...-.....-.++ ....+-|-++|+.|+|||+||+.+.+.
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~-----~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGK-----RTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTT-----CCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCC-----CCCCceEEEECCCCccHHHHHHHHHHH
Confidence 68899888888876653110000000000 123467889999999999999999984
No 58
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.0012 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-+.|+|+.|+||||||+.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4779999999999999999884
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.67 E-value=0.00097 Score=54.59 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=32.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|......++.+.+..-. .. ..-+-|+|..|+|||+||+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~--------------~~-~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA--------------PL-DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT--------------TS-CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHh--------------CC-CCCEEEECCCCCcHHHHHHHHHHh
Confidence 57899888888877665422 01 234568999999999999999985
No 60
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.67 E-value=0.0013 Score=51.72 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|+|+|+.|+|||||++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33679999999999999999999874
No 61
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.67 E-value=0.0011 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999976
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.66 E-value=0.0016 Score=61.51 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=37.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|++.+...+++.|.... ..-+-++|..|+||||||+.+.+.
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~-----------------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRR-----------------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSS-----------------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhccC-----------------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999987543 334578999999999999998873
No 63
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.65 E-value=0.0023 Score=54.25 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|.|..|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5578999999999999999999865
No 64
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.64 E-value=0.0011 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 56999999999999999999875
No 65
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.63 E-value=0.0013 Score=55.58 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4478999999999999999999887
No 66
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.63 E-value=0.00098 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+|.|.|+.|+||||||+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998763
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.61 E-value=0.00069 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-..+.|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999984
No 68
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.61 E-value=0.0011 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+..+|.|.|+.|+||||+++.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999999866
No 69
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.61 E-value=0.0014 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999998754
No 70
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.60 E-value=0.0014 Score=49.75 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++++|+.|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999876
No 71
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.60 E-value=0.0014 Score=54.46 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=35.6
Q ss_pred ceeccchhHHHHHHHhcCC--CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSG--SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+...+... ......+.. . .....-+-++|..|+|||+||+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~--~---~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLR--H---EVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHH--H---HCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhccccc--c---cCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999888888776541 000000000 0 011345679999999999999999874
No 72
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.59 E-value=0.0015 Score=50.94 Aligned_cols=24 Identities=54% Similarity=0.720 Sum_probs=21.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918 197 QLPIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
....+|+|.|+.|+||||+++.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999864
No 73
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.56 E-value=0.0019 Score=50.45 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|.|.|+.|+||||+++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998875
No 74
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.56 E-value=0.0013 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
..+|+|+|+.|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5699999999999999999998
No 75
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.55 E-value=0.0015 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|+|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999875
No 76
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.55 E-value=0.0039 Score=49.92 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRI 246 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i 246 (251)
-.++.|+|..|+|||||++.+........ .-..++|+.....++..++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 56999999999999999999877321111 1245788877776555443
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.54 E-value=0.0011 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 78
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.53 E-value=0.0018 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 79
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.52 E-value=0.002 Score=53.78 Aligned_cols=53 Identities=23% Similarity=0.257 Sum_probs=37.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+...+........ .+......+.++|+.|+||||||+.+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~--------~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLK--------DPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCS--------CTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCC--------CCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 578998888888777654310000 00233568999999999999999999884
No 80
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.47 E-value=0.0027 Score=54.58 Aligned_cols=59 Identities=24% Similarity=0.154 Sum_probs=35.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+...+...-.... .+............+-++|+.|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLR--NGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHH--TTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhc--cccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 478888888887776620000000 00000000123456889999999999999999883
No 81
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.47 E-value=0.0015 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999873
No 82
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.47 E-value=0.0014 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.|+|+.|+|||||++.+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999998763
No 83
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.46 E-value=0.0015 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 84
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.45 E-value=0.0026 Score=54.59 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=36.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.|.+.+...-.....-..+ ....+-|-++|+.|+|||+||+.+.+.
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~-----~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGN-----RKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSS-----CCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcC-----CCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 68999999988887763110000000000 122345778999999999999999984
No 85
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.45 E-value=0.0022 Score=49.47 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.|.|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998763
No 86
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.45 E-value=0.0026 Score=55.23 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=36.7
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+++.........-.. . .....-+-|+|..|+|||+||+.|.+.
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~--~---~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTG--L---RAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCG--G---GCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcc--c---CCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999888877321000000000 0 112456889999999999999999874
No 87
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.44 E-value=0.0016 Score=52.11 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..-.+++|+|+.|+|||||++.+...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34679999999999999999999873
No 88
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.44 E-value=0.0014 Score=50.24 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|.|+|+.|+||||+++.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 356788999999999999999875
No 89
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.43 E-value=0.0017 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|+.|+|||||++.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999999999999873
No 90
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.42 E-value=0.0021 Score=50.55 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..++|.|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 467899999999999999999886
No 91
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.39 E-value=0.003 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+|.|+|.+|+|||||+..+...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999988764
No 92
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.38 E-value=0.0018 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
-.+|+|+|+.|+|||||++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999987
No 93
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.37 E-value=0.0024 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3355899999999999999999866
No 94
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.37 E-value=0.0019 Score=53.17 Aligned_cols=24 Identities=42% Similarity=0.408 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 95
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.36 E-value=0.0019 Score=52.83 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=33.0
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.+.+.+..-..+..-..-+ .....-+-++|+.|+||||||+.+.+.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLG-----AKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHS-----CCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCC-----CCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 68898888777766543100000000000 011222569999999999999999884
No 96
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.36 E-value=0.002 Score=52.15 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999884
No 97
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.35 E-value=0.002 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 98
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.35 E-value=0.002 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
-.+++|+|+.|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 5699999999999999999887
No 99
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0024 Score=53.66 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+++|+|+.|+|||||++.+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998873
No 100
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.34 E-value=0.0043 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.....|.|+|+.|+||||+++.+..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3467799999999999999998776
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.33 E-value=0.0023 Score=50.83 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCccc---cc-CCCceEEEEeCCCCCHH
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNVV---SA-HFDKKIWVCVSEPFDDI 244 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v---~~-~Fd~~~wV~Vs~~~~~~ 244 (251)
.-.+++|+|+.|+|||||++.+...... .. .-...+|+.-...+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 3579999999999999999999752111 11 12346777655544433
No 102
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.32 E-value=0.0021 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 103
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.32 E-value=0.0054 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|+|..|+|||||++.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3467999999999999999999887
No 104
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.32 E-value=0.0022 Score=49.63 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+|.|.|+.|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 105
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.32 E-value=0.0034 Score=52.82 Aligned_cols=45 Identities=27% Similarity=0.308 Sum_probs=37.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..+..+.+++.... ...++-+.|+.|+||||+|+.+.+.
T Consensus 27 ~ivg~~~~~~~l~~~l~~~~----------------~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKGK----------------IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTTC----------------CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHcCC----------------CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 68999999999999987543 2457788899999999999999874
No 106
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.32 E-value=0.0022 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999998765
No 107
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.32 E-value=0.0021 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999987
No 108
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.31 E-value=0.0036 Score=55.46 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=36.8
Q ss_pred ceeccchhHHHHHHHhcCC---CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSG---SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++.|.+.+... .+- . .++ ....+-|-++|+.|+|||+||+.+.+.
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~-~--~~~-----~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHL-F--TGK-----RTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTT-T--SGG-----GCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHH-h--hcc-----CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 6899999888888776311 000 0 000 122467889999999999999999984
No 109
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.30 E-value=0.0028 Score=48.91 Aligned_cols=25 Identities=44% Similarity=0.569 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999988654
No 110
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.30 E-value=0.0022 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999983
No 111
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.30 E-value=0.0016 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999863
No 112
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.30 E-value=0.0022 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 458999999999999999999873
No 113
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.30 E-value=0.0048 Score=51.39 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|-|.|+.|+|||||++.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999976
No 114
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.29 E-value=0.0019 Score=51.50 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999874
No 115
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.28 E-value=0.0023 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 116
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.28 E-value=0.0024 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999999999873
No 117
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.28 E-value=0.0033 Score=51.26 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|.++|+.|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4468999999999999999999876
No 118
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.26 E-value=0.003 Score=53.10 Aligned_cols=25 Identities=44% Similarity=0.704 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999887
No 119
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.26 E-value=0.0023 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999987
No 120
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.25 E-value=0.0025 Score=53.49 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=35.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|......++.+.+..-. .. ..-|-|+|..|+|||++|+.|++.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a--------------~~-~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA--------------PS-DATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC--------------ST-TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh--------------CC-CCcEEEECCCCchHHHHHHHHHHh
Confidence 58899988888888775432 11 234569999999999999999983
No 121
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.25 E-value=0.0024 Score=52.38 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 122
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.25 E-value=0.0024 Score=52.03 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 123
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.24 E-value=0.0028 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918 197 QLPIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.+.+||+|.|-|||||||.+-.+-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHH
Confidence 458999999999999999876653
No 124
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.24 E-value=0.0025 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 125
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.24 E-value=0.0077 Score=54.15 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=35.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+...+..+. -+-++|+.|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~-------------------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE-------------------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC-------------------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC-------------------eeEeecCchHHHHHHHHHHHHH
Confidence 68999998888887776533 4678999999999999999984
No 126
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.23 E-value=0.0025 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 127
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.23 E-value=0.0052 Score=54.56 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=33.9
Q ss_pred ceeccchhHHHHH---HHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVA---NLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~---~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+. +++.... ...+-+-++|+.|+|||+||+.+.+.
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~---------------~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKK---------------MAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTC---------------CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhCC---------------CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 6899998877544 4443332 22345778999999999999999984
No 128
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.22 E-value=0.0016 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=16.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999998
No 129
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.0032 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999887653
No 130
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.22 E-value=0.0027 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.....+-++|+.|+|||+||+.|.+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999984
No 131
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.21 E-value=0.0024 Score=49.60 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+|.|.|+.|+||||+++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999866
No 132
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.21 E-value=0.0026 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 133
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.20 E-value=0.0026 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999873
No 134
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.20 E-value=0.0022 Score=52.03 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
+.|+|+.|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999874
No 135
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.20 E-value=0.0026 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999874
No 136
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.19 E-value=0.0034 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918 197 QLPIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 447899999999999999999986
No 137
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.17 E-value=0.0027 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999874
No 138
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.17 E-value=0.0036 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+++|+|+.|+|||||++.+..-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999998873
No 139
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.16 E-value=0.0028 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 140
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0035 Score=53.97 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+++|+|..|+|||||++.+..-
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34689999999999999999998873
No 141
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.13 E-value=0.0032 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|+++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.11 E-value=0.0026 Score=52.59 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
+.++|+.|+||||||+.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999884
No 143
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.10 E-value=0.0033 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...++.|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3779999999999999999887653
No 144
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.08 E-value=0.0031 Score=53.27 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=34.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++|.+..++.+...+.... -+-++|..|+|||+||+.+.+
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~-------------------~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG-------------------HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC-------------------CEEEESCCCHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcCC-------------------eEEEECCCCCcHHHHHHHHHH
Confidence 68999988888888776532 367899999999999999987
No 145
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.08 E-value=0.0048 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.256 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+-|+|+.|+||||||+.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 556889999999999999999984
No 146
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.07 E-value=0.0036 Score=50.16 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..-.+|+|.|..|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44679999999999999999999873
No 147
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.07 E-value=0.0035 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 148
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.07 E-value=0.0098 Score=50.33 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|+|.+|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999998876
No 149
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.06 E-value=0.0039 Score=48.80 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+-.+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 5578999999999999999998765
No 150
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.04 E-value=0.0041 Score=49.03 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998763
No 151
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.03 E-value=0.0066 Score=49.25 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 196 TQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 196 ~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.....++.+.|.||+|||||+..+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 34578889999999999999999873
No 152
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.02 E-value=0.0056 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+-++|..|+|||+||+.+.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999984
No 153
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.01 E-value=0.004 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999998763
No 154
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.00 E-value=0.0027 Score=56.25 Aligned_cols=24 Identities=38% Similarity=0.235 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+-|+|+.|+||||||+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999999999983
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0051 Score=54.18 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=36.1
Q ss_pred ceeccchhHHHHHHHhcC----CCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMS----GSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+.- .+- .. . -+-...+-|-++|++|+|||+||+.|.+.
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~--~~-~-----~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADL--YE-Q-----IGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHH--HH-H-----HCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHH--HH-h-----CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 688999888888765432 100 00 0 00133566889999999999999999984
No 156
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.99 E-value=0.0038 Score=51.37 Aligned_cols=23 Identities=43% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|..|+|||||++.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 157
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.98 E-value=0.0043 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 56999999999999999999876
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.98 E-value=0.0033 Score=51.87 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
+.|+|+.|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999999874
No 159
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.96 E-value=0.011 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...++|.++|.+|+||||++-.+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4478999999999999999988774
No 160
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.94 E-value=0.0083 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|+|.+|+|||||+..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998753
No 161
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.93 E-value=0.0053 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.|+|.+|+||||++..+..-
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 34789999999999999999998763
No 162
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.91 E-value=0.0051 Score=55.18 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=35.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++++.+++...-.....-.. -+.....-+-|+|..|+|||+||+.+.+.
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~----~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKA----IGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHH----HTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHh----cCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 5899999888888776432000000000 00012345789999999999999999874
No 163
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.89 E-value=0.019 Score=49.01 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=37.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
..-.++-|+|..|+||||||..+........ .=..++|+.....|+..++.+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 3467999999999999999999876421211 123678999888888766543
No 164
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.88 E-value=0.0063 Score=48.55 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 196 TQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-...+||-|.|+.|+||||.|+.+.+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999873
No 165
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.88 E-value=0.0037 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 166
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.87 E-value=0.0046 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999874
No 167
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.86 E-value=0.014 Score=46.87 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-.+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 168
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.84 E-value=0.005 Score=58.63 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=36.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.+..++++.+++...-.....-.+- +-....-|.++|..|+||||||+.+.+.
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l----~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAI----GVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSS----CCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhc----CCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 68899988888877764200000000000 0122456899999999999999999884
No 169
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.83 E-value=0.0036 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 56899999999999999999977
No 170
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0067 Score=53.54 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=35.8
Q ss_pred ceeccchhHHHHHHHhcC----CCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMS----GSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+.- .+- .. . -+-...+-|-++|+.|+|||+||+.|.+.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~--f~-~-----~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEI--FQ-R-----VGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHH--HH-H-----HCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHH--HH-h-----CCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 688998888777665432 110 00 0 00133677889999999999999999984
No 171
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.81 E-value=0.0067 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998774
No 172
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.81 E-value=0.005 Score=51.76 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 56899999999999999999875
No 173
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.0065 Score=53.57 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=36.3
Q ss_pred ceeccchhHHHHHHHhc----CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLM----SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+. ..+- .. . -+-...+-|-++|++|+|||+||+.|.+.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~--f~-~-----~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADK--FK-D-----MGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHH--HH-H-----HCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHH--HH-h-----CCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 68899988888876532 2210 00 0 00133667889999999999999999984
No 174
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.79 E-value=0.011 Score=50.67 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC----CceEEEEeCCCCCHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHF----DKKIWVCVSEPFDDIR 245 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F----d~~~wV~Vs~~~~~~~ 245 (251)
..-.++.|+|..|+|||||++.+.......... ..++|+.-...+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 346899999999999999999988742111111 2448887766554443
No 175
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.79 E-value=0.013 Score=51.65 Aligned_cols=24 Identities=46% Similarity=0.638 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 176
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.77 E-value=0.0053 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.++.|+|..|+|||||++.+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998853
No 177
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.77 E-value=0.016 Score=48.90 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=35.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAH----FDKKIWVCVSEPFDDIRIA 247 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~----Fd~~~wV~Vs~~~~~~~i~ 247 (251)
-.++-|+|..|+||||||..+......... =..++|+.....|+..++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~ 159 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE 159 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 568999999999999999998764211110 1367899888887776654
No 178
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.77 E-value=0.0086 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+-++|+.|+||||||+.+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 345779999999999999999873
No 179
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.007 Score=46.47 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....|.|+|..|+|||||+..+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557889999999999999998875
No 180
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.74 E-value=0.0057 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+|.|.|+.|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998863
No 181
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.006 Score=53.18 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=35.4
Q ss_pred ceeccchhHHHHHHHhcC----CCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMS----GSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+.- .+- .. .. +-...+-|-++|++|+|||+||+.|.+.
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~--f~-~~-----gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPEL--FE-SL-----GIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHH--HH-HH-----TCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHH--HH-hC-----CCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 688999888777665432 110 00 00 0123566779999999999999999984
No 182
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.71 E-value=0.0058 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 458999999999999999999873
No 183
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.71 E-value=0.0037 Score=53.00 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=31.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..+..+...+.... ..-+-++|..|+|||+||+.+.+.
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~-----------------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG-----------------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG-----------------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hccChHHHHHHHHHHhhCCC-----------------CceEEEECCCCccHHHHHHHHHHh
Confidence 58888876655544443322 112789999999999999999874
No 184
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.70 E-value=0.0057 Score=52.58 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.|..-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999999873
No 185
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.70 E-value=0.0074 Score=48.82 Aligned_cols=24 Identities=21% Similarity=0.033 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999865
No 186
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.65 E-value=0.0063 Score=52.27 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||.+.|..-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999863
No 187
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.61 E-value=0.0078 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999887763
No 188
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.58 E-value=0.011 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-+-++|+.|+||||||+.|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3779999999999999999984
No 189
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.57 E-value=0.007 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||.+.|..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 458999999999999999999873
No 190
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.56 E-value=0.0081 Score=48.22 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998875
No 191
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.55 E-value=0.018 Score=48.55 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCccccc---------CC-----CceEEEEeCCCCCHHHHHH
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNVVSA---------HF-----DKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~---------~F-----d~~~wV~Vs~~~~~~~i~~ 248 (251)
.-.++-|+|..|+||||||..+..+..... .. ..++|+.....|+..++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~ 161 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence 367999999999999999998876421111 11 3678999888887776653
No 192
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.55 E-value=0.0071 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||.+.|..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999999873
No 193
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.54 E-value=0.0072 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||.+.|..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 458999999999999999999873
No 194
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.53 E-value=0.0073 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|.+|+|||||++.+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998765
No 195
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.50 E-value=0.0082 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+..|+|..|.|||||+..|+-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999863
No 196
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.50 E-value=0.0076 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.|..-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 458999999999999999999873
No 197
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.50 E-value=0.021 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...||.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888765
No 198
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.50 E-value=0.0076 Score=52.12 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||.+.|..-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 458999999999999999999873
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.49 E-value=0.0071 Score=54.34 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
+.|+|+.|+||||||+.|.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999874
No 200
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.48 E-value=0.0094 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|+|+|.+|+||||++..+..-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998763
No 201
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.46 E-value=0.0091 Score=45.27 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
..-|.|+|..|+|||||++.+.++.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999987653
No 202
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.45 E-value=0.016 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999999876
No 203
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.44 E-value=0.0064 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.....|.|.|..|+||||+++.+.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998874
No 204
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.43 E-value=0.0084 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.++.|+|..|+|||||++.+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 459999999999999999998874
No 205
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.42 E-value=0.0085 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999999876
No 206
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.42 E-value=0.011 Score=54.32 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=33.1
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+.-++.+...+..+ ..+.|+|+.|+||||||+.+.+-
T Consensus 42 ~i~G~~~~l~~l~~~i~~g-------------------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK-------------------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT-------------------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred eEECchhhHhhccccccCC-------------------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 5788877776666655432 37899999999999999999874
No 207
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.42 E-value=0.0085 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998765
No 208
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.42 E-value=0.0063 Score=52.15 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.|..-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 458999999999999999999873
No 209
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.41 E-value=0.0083 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
--|.|+|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999765
No 210
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.40 E-value=0.008 Score=46.07 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456789999999999999988764
No 211
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.40 E-value=0.056 Score=46.20 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD 243 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~ 243 (251)
.-.++.|+|.+|+||||||..+.... ...=..++|+.....++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCH
Confidence 35689999999999999999887632 111135678877766654
No 212
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.39 E-value=0.0094 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....|.|.|+.|+||||+|+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999876
No 213
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.39 E-value=0.018 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 56999999999999999999876
No 214
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.37 E-value=0.013 Score=45.00 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....-|.|+|..|+|||||...+.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346778999999999999999998753
No 215
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.36 E-value=0.011 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...++|+|+|-||+||||+|-.+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4588999999999999999887655
No 216
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.36 E-value=0.016 Score=43.60 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.....|.|+|..|+|||||+..+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44667899999999999999998764
No 217
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.36 E-value=0.013 Score=44.71 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....-|.|+|..|+|||||+..+.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 345678899999999999999988763
No 218
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.35 E-value=0.0078 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+.| +|+|..|+|||||++.++..
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC-
T ss_pred EEE-EEECCCCCCHHHHHHHHhCC
Confidence 444 99999999999999998763
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.34 E-value=0.0073 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 367999999999999999999988
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.012 Score=52.06 Aligned_cols=53 Identities=28% Similarity=0.276 Sum_probs=35.7
Q ss_pred ceeccchhHHHHHHHhc----CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLM----SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+. ..+- .. . -+-...+-|-++|+.|+|||+||+.|.+.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~--f~-~-----~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPER--FA-T-----LGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHH--HH-H-----HTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHH--HH-H-----CCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 58899988888876532 1110 00 0 00133667779999999999999999984
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.33 E-value=0.024 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=20.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|.|+|.+|+|||||+..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999998873
No 222
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.32 E-value=0.0094 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999866
No 223
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.31 E-value=0.0057 Score=47.74 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
-..|+|+|..|+|||||.+.+....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999988753
No 224
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.30 E-value=0.0056 Score=52.57 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||.+.|..-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999863
No 225
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.30 E-value=0.0088 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999999999885
No 226
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.29 E-value=0.011 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 56999999999999999999986
No 227
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.29 E-value=0.012 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998765
No 228
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.28 E-value=0.01 Score=44.73 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
...--|.|+|..|+|||||+..+.++.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 346678999999999999999988753
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.26 E-value=0.017 Score=54.59 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=37.8
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+.+.+........ .+......+-++|+.|+|||+||+.+.+.
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~--------~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLK--------DPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCS--------CTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred cCcChHHHHHHHHHHHHHHHcccC--------CCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 589999888888777753221000 00234567899999999999999999874
No 230
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.26 E-value=0.01 Score=44.23 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.--|.|+|..|+|||||.+.+.++.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999987653
No 231
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.26 E-value=0.012 Score=45.27 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=23.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 196 TQLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.....-|.|+|..|+|||||.+.+.+..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3557789999999999999999988763
No 232
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.25 E-value=0.028 Score=48.24 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD 243 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~ 243 (251)
.-.++.|+|..|+|||||+..+..... ..=..++|+.....++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDP 103 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccch
Confidence 367999999999999999999887422 11124567766665553
No 233
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.24 E-value=0.01 Score=44.76 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...--|.|+|..|+|||||.+.+.++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 44667899999999999999988665
No 234
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.24 E-value=0.0091 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-|.|+|.+|+|||||++.+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999864
No 235
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.24 E-value=0.013 Score=44.78 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
+..--|.|+|..|+|||||...+.++.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 335678999999999999999987653
No 236
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.18 E-value=0.012 Score=51.64 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.|+|+.|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44689999999999999999998764
No 237
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.17 E-value=0.011 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.|..-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 458999999999999999999873
No 238
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.16 E-value=0.015 Score=49.43 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+|.|+|+.|+|||||+..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 239
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.16 E-value=0.013 Score=45.90 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....-|.|+|..|+|||||+..+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346678899999999999999988753
No 240
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.15 E-value=0.011 Score=44.53 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....-|.|+|..|+|||||.+.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999998765
No 241
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.15 E-value=0.11 Score=44.27 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....|+|+|..|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998753
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.15 E-value=0.018 Score=54.68 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=36.1
Q ss_pred ceeccchhHHHHHHHh----cCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLL----MSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+++ ...+- . ...+ ....+-|-++|+.|+|||+||+.|.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~--f-~~~g-----~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPAL--F-KAIG-----VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGG--G-TSCC-----CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHH--H-hhcC-----CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5788888887776654 22210 0 0000 233667889999999999999999995
No 243
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.13 E-value=0.018 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446789999999999999998765
No 244
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.12 E-value=0.015 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+++|+|..|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999999873
No 245
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.11 E-value=0.012 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999999876
No 246
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.11 E-value=0.012 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..--|.|+|..|+|||||.+.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999998754
No 247
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.10 E-value=0.013 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.++
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999887664
No 248
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.10 E-value=0.012 Score=44.21 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
..--|.|+|..|+|||||.+.+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678899999999999999988653
No 249
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.10 E-value=0.012 Score=43.71 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998754
No 250
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.09 E-value=0.012 Score=45.15 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=19.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
---|.|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999776554
No 251
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.09 E-value=0.01 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999998873
No 252
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.08 E-value=0.012 Score=43.84 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999654
No 253
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.07 E-value=0.015 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|+|+|..|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999999875
No 254
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.07 E-value=0.015 Score=44.97 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...--|.|+|.+|+|||||++.+.+.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc
Confidence 34556889999999999999988774
No 255
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.05 E-value=0.012 Score=45.27 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-|.|+|.+|+|||||.+.+.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998864
No 256
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.03 E-value=0.013 Score=44.59 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..--|.|+|..|+|||||++.+.++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3556889999999999999998765
No 257
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.03 E-value=0.014 Score=44.71 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
...--|.|+|..|+|||||.+.+.+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 335578899999999999999988764
No 258
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.017 Score=50.75 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=35.8
Q ss_pred ceeccchhHHHHHHHhc----CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLM----SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+..+++|.+.+. ..+- .. . -+-...+-|-++|+.|+|||+||+.|.+.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~--f~-~-----~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPEL--YE-E-----MGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHH--HH-H-----HTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHH--HH-h-----CCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 67899888877766542 2110 00 0 00133567889999999999999999984
No 259
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.01 E-value=0.02 Score=43.28 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..-|.|+|..|+|||||...+.++
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 567889999999999999998864
No 260
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.01 E-value=0.017 Score=48.56 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.|.|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3679999999999999999998653
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.00 E-value=0.013 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|+|||||++.+.+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45999999999999999998865
No 262
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.016 Score=43.76 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.--|.|+|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999987653
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.99 E-value=0.033 Score=48.54 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHH
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRI 246 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i 246 (251)
.-.++.|+|..|+|||||+..+.-...... .-..++|+.-...++...+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 356999999999999999997642111111 2235778877666665544
No 264
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.99 E-value=0.011 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|..|.|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 265
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.98 E-value=0.013 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998865
No 266
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.98 E-value=0.012 Score=51.76 Aligned_cols=21 Identities=43% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
++|+|..|+|||||++.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999874
No 267
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.97 E-value=0.014 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 268
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.95 E-value=0.014 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
--|.|+|..|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 269
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.011 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+.+-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999998874
No 270
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.93 E-value=0.012 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...--|.|+|.+|+|||||++.+.+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3456789999999999999999853
No 271
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.91 E-value=0.015 Score=43.98 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345779999999999999998754
No 272
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.91 E-value=0.014 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...-|.|+|..|+|||||+..+.++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557889999999999999998765
No 273
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.90 E-value=0.015 Score=44.35 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..--|.|+|..|+|||||+..+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 274
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.90 E-value=0.015 Score=43.95 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.++
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999998765
No 275
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.88 E-value=0.014 Score=52.92 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|+.|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999985
No 276
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.88 E-value=0.015 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-.+++|+|+.|+|||||++.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3579999999999999999999873
No 277
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.86 E-value=0.025 Score=45.24 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999884
No 278
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.86 E-value=0.017 Score=43.99 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.--|.|+|..|+|||||.+.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999999998754
No 279
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.85 E-value=0.015 Score=45.04 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
...--|.|+|..|+|||||++.+.+..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 446778999999999999999987653
No 280
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.038 Score=42.10 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999999998854
No 281
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.015 Score=44.73 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.++
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 282
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.84 E-value=0.017 Score=44.64 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
+..--|.|+|..|+|||||+..+.+..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 346678999999999999999987753
No 283
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.83 E-value=0.015 Score=52.84 Aligned_cols=23 Identities=52% Similarity=0.816 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999974
No 284
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.83 E-value=0.019 Score=48.94 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999999853
No 285
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.82 E-value=0.019 Score=48.04 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....|+|+|.+|+|||||...+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 35689999999999999999988763
No 286
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.81 E-value=0.015 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999873
No 287
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.016 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||+..+.++
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998765
No 288
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.80 E-value=0.017 Score=46.24 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
...-|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 35678999999999999999998753
No 289
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.79 E-value=0.03 Score=48.09 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=31.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD 243 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~ 243 (251)
-.++-|.|.+|+||||||..+..... ..=..++|+.....++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDP 105 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccH
Confidence 56899999999999999998876422 22235778887766654
No 290
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.77 E-value=0.014 Score=48.81 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+|.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999998875
No 291
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.77 E-value=0.03 Score=49.42 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=34.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+.-++.+...+...-.......+... ....+-|-++|+.|+||||||+.+...
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~---~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRH---EVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTT---TCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhcccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 5889888887776655221000000000000 112455889999999999999999873
No 292
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.77 E-value=0.026 Score=44.77 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....-|.|+|..|+|||||+..+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678899999999999999999876
No 293
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.76 E-value=0.018 Score=44.49 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
..--|.|+|..|+|||||...+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 35568899999999999999988653
No 294
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.75 E-value=0.017 Score=44.27 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.--|.|+|..|+|||||++.+.++.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999988753
No 295
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.75 E-value=0.017 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||+..+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999764
No 296
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.74 E-value=0.014 Score=52.99 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=33.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++|.++-+..+.+.+.-..- +. .....++.++|+.|+||||||+.+.+.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~---------~~--~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKL---------TK--SLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHH---------SS--SCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHh---------cc--cCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 467877766666544321110 00 123568999999999999999999873
No 297
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.74 E-value=0.027 Score=45.46 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVC 236 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~ 236 (251)
..+|.|.|+.|+||||+++.+..... ...+..++...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999988432 23455444443
No 298
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.74 E-value=0.018 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998765
No 299
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.73 E-value=0.017 Score=44.80 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
...-|.|+|..|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 35568999999999999999988753
No 300
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.73 E-value=0.017 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.++.|.|..|+|||||+..+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999877654
No 301
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.73 E-value=0.017 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.++
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998775
No 302
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.72 E-value=0.018 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 046918 200 IIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.+++++|+.|+|||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 488999999999999999998
No 303
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.71 E-value=0.018 Score=48.65 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=25.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCV 237 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~V 237 (251)
-+++-|+|++|+||||||..+... .-..++|+++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEe
Confidence 456789999999999999999874 1124566666
No 304
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.71 E-value=0.016 Score=51.28 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+.+-
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999999874
No 305
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.70 E-value=0.017 Score=44.40 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.--|.|+|..|+|||||++.+.++.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999998753
No 306
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.69 E-value=0.018 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+++|+|+.|+|||||++.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999875
No 307
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.69 E-value=0.018 Score=44.26 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.--|.|+|..|+|||||.+.+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999988753
No 308
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.68 E-value=0.019 Score=43.95 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 309
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.66 E-value=0.019 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 200 IIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.+++|+|..|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 489999999999999999998753
No 310
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.65 E-value=0.018 Score=53.10 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|+.|+|||||++.+..-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999984
No 311
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.65 E-value=0.018 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999987654
No 312
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.62 E-value=0.019 Score=45.05 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.++
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999865
No 313
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.61 E-value=0.021 Score=47.90 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 196 TQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
......|+|+|..|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 355889999999999999999998875
No 314
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.60 E-value=0.019 Score=43.89 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..--|.|+|..|+|||||...+.++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999998754
No 315
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.019 Score=43.83 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
--|.|+|..|+|||||+..+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998765
No 316
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.58 E-value=0.019 Score=44.36 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...--|.|+|..|+|||||+..+.++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34667899999999999999998764
No 317
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.57 E-value=0.018 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
|+|+|..|+|||||++.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999875
No 318
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.56 E-value=0.015 Score=52.84 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+|.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 479999999999999999999873
No 319
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.55 E-value=0.02 Score=43.52 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=21.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...--|.|+|..|+|||||.+.+.+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 33567889999999999999999865
No 320
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.019 Score=44.03 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..--|.|+|..|+|||||.+.+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456899999999999999998764
No 321
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.54 E-value=0.024 Score=49.85 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.|+|.+|+||||++..+..-
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998763
No 322
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.54 E-value=0.026 Score=41.99 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
..+..|+|+.|.|||||...|+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4688999999999999999976
No 323
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.019 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|+|||||++.+..-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 569999999999999999999873
No 324
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.019 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.++
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 556889999999999999998864
No 325
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.53 E-value=0.02 Score=44.47 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+..--|.|+|..|+|||||+..+.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34667889999999999999998765
No 326
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.02 Score=52.76 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|..|+|||||++.+..-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999874
No 327
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.02 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-|.|+|..|+|||||...+.++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999998875
No 328
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.46 E-value=0.02 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|+|||||++.+..-
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 469999999999999999999873
No 329
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.022 Score=43.67 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998865
No 330
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.39 E-value=0.018 Score=45.21 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.....|.|+|..|+|||||...+.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 346678999999999999999998864
No 331
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.39 E-value=0.023 Score=47.47 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|+.|+|||||.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 48899999999999999999874
No 332
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.38 E-value=0.023 Score=44.07 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..--|.|+|..|+|||||+..+.++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3557899999999999999998765
No 333
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.34 E-value=0.026 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.348 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998875
No 334
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.34 E-value=0.023 Score=44.00 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..-|.|+|..|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998875
No 335
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.33 E-value=0.024 Score=44.10 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...-|.|+|..|+|||||+..+.++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999998764
No 336
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.28 E-value=0.023 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 458999999999999999999873
No 337
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.28 E-value=0.02 Score=43.72 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||...+.++
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999764
No 338
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.28 E-value=0.017 Score=45.65 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=19.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.-+-|+|++|+||||+|..+.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999998777763
No 339
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.25 E-value=0.025 Score=44.13 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..--|.|+|..|+|||||++.+.++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998765
No 340
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.25 E-value=0.045 Score=51.64 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=35.5
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..++.+...+..... +... .......+-++|+.|+|||+||+.+.+.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~------g~~~--~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARA------GLGH--EHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHT------TCSC--TTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhc------ccCC--CCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 477888777777666542110 0000 0234567899999999999999999873
No 341
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.24 E-value=0.015 Score=44.11 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=11.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+..--|.|+|..|+|||||+..+.++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp SEEEEEEEECCCCC------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34667899999999999999988765
No 342
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.23 E-value=0.045 Score=52.45 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=36.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|.+..+..+...+...... ... +......+-|+|+.|+|||+||+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g------~~~--~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAG------LKD--PNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGG------CSC--SSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcc------cCC--CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5789988887777766432100 000 0233568899999999999999999874
No 343
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.22 E-value=0.045 Score=46.04 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
-.++-|.|.+|+||||||..+..+.-.+. ..++|++.-
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 46888999999999999999876432222 466777654
No 344
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.20 E-value=0.032 Score=43.39 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888764
No 345
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.20 E-value=0.036 Score=44.88 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....-|+|+|..|+|||||...+...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 34667999999999999999998765
No 346
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.17 E-value=0.027 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||++.+.++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456779999999999999998765
No 347
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.16 E-value=0.025 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999763
No 348
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.029 Score=44.31 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999874
No 349
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.12 E-value=0.056 Score=48.20 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=37.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC-HHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFD-DIRIAKA 249 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~-~~~i~~~ 249 (251)
-.-++|+|..|+|||+|++.+.++. .+.+-++++++-|.+... +.+++++
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~ 215 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYME 215 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHh
Confidence 4568999999999999998887741 233567889999998764 4444443
No 350
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.10 E-value=0.026 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+-.-++|.|+.|+||||+|+.+.+
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3345689999999999999998855
No 351
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.09 E-value=0.031 Score=48.11 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
++++|+|+|..|+|||||.+.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 47789999999999999999998753
No 352
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.00 E-value=0.06 Score=44.00 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
...|.++|..|+|||||...+.+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998753
No 353
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.99 E-value=0.013 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|+.|+|||||++.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 48999999999999999999864
No 354
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.92 E-value=0.063 Score=43.70 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.-.|.|+|..|+|||||...+....
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999998753
No 355
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.88 E-value=0.053 Score=48.18 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=36.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC-HHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFD-DIRIAKA 249 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~-~~~i~~~ 249 (251)
-.-++|+|..|+|||+|++.+.++. .+.+-+.++++-|.+... +.+++++
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~ 203 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHE 203 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHH
Confidence 4578999999999999998887641 233457788898988763 3444443
No 356
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.84 E-value=0.028 Score=48.26 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-|+|+|..|+|||||++.++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3599999999999999998764
No 357
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.82 E-value=0.024 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 358
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.81 E-value=0.062 Score=46.24 Aligned_cols=44 Identities=25% Similarity=0.208 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDI 244 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~ 244 (251)
-.++-|.|.+|+||||||..+.... ...=..++|+.....++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH
Confidence 5588889999999999998877642 2222367888877766543
No 359
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.79 E-value=0.038 Score=44.65 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.--|+++|..|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568899999999999999988753
No 360
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.79 E-value=0.053 Score=42.61 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|+|+|+.|+||+|.|..+-+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3467999999999999999988765
No 361
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.77 E-value=0.033 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=20.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
---|.|+|..|+|||||...++..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 446789999999999999987654
No 362
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.77 E-value=0.042 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....+|-++|+.|.||||+|+.+..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999864
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.73 E-value=0.042 Score=43.14 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-..|.|.|+.|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999998764
No 364
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.036 Score=43.72 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||+..+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 365
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.68 E-value=0.033 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+++|+|..|+|||||++.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999876
No 366
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.67 E-value=0.038 Score=43.86 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-|.|+|-+|+|||+|+....++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3668999999999999987654
No 367
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.63 E-value=0.034 Score=52.93 Aligned_cols=57 Identities=23% Similarity=0.203 Sum_probs=36.3
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
++.|.+.-++.+.+.+...-......... +-.....+.++|+.|+||||||+.+.+.
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~----~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKF----GMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCC----CCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhc----CCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 57888888888887664321000000000 0123456789999999999999999984
No 368
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.61 E-value=0.029 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999873
No 369
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.61 E-value=0.72 Score=40.64 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=27.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
-.++.|.|..|+|||||+..+..+...... ..++|++..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC
Confidence 458999999999999999998875322211 246666543
No 370
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.60 E-value=0.053 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.3
Q ss_pred CCCEEEEEEc-CCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITG-MGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G-~gGvGKTTLa~~v~~ 221 (251)
...++|+|+| -||+||||+|-.+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 5589999996 899999999887665
No 371
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.54 E-value=0.025 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 458999999999999999998763
No 372
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.53 E-value=0.03 Score=44.87 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=18.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 373
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.49 E-value=0.091 Score=43.13 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..-|-++|++|+|||+||..+.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999999886
No 374
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.41 E-value=0.056 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+.+|+|..|.|||||...|+-
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 45999999999999999999984
No 375
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.40 E-value=0.042 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v 219 (251)
-.+++|+|..|+|||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 569999999999999999994
No 376
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.40 E-value=0.032 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-+-++|..|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4678999999999999999884
No 377
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.39 E-value=0.055 Score=49.42 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.|.|+.|+||||+|+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 378
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.38 E-value=0.13 Score=42.34 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....-|+|+|..|+|||||...+....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 446789999999999999999998753
No 379
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.36 E-value=0.058 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+|.+.|+.|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 380
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.34 E-value=0.033 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998773
No 381
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.34 E-value=0.019 Score=44.44 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=4.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
--|.|+|..|+|||||...+.++
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988775
No 382
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.33 E-value=0.061 Score=47.77 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
+.++|+|..|+|||||++.+.++... .+-+.++++-+.+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGert 192 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERT 192 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCc
Confidence 36899999999999999998875222 223566777787765
No 383
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.32 E-value=0.095 Score=46.12 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=34.1
Q ss_pred eccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 164 ~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.|.++-.+.+.+.+.....+.. .........-|+|+|..|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~------~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLE------SKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSS------SCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccch------hccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4556666777766643220000 00002346789999999999999999998753
No 384
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.30 E-value=0.051 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+|-++|+.|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998763
No 385
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.26 E-value=0.074 Score=47.82 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....+|.+.|+.|+||||+++.+...
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHH
Confidence 34679999999999999999999884
No 386
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.25 E-value=0.06 Score=42.17 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
..+..|+|..|.||||+...|+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4688999999999999999875
No 387
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.24 E-value=0.023 Score=44.49 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||...+.+.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999998854
No 388
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.08 E-value=0.072 Score=46.23 Aligned_cols=42 Identities=17% Similarity=-0.024 Sum_probs=29.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccc-cCCCceEEEEeCCCC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVS-AHFDKKIWVCVSEPF 241 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~-~~Fd~~~wV~Vs~~~ 241 (251)
-..++|+|..|+|||||++.|.+..... ..+++ +.+-|.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 5689999999999999999987632111 12333 457777655
No 389
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.05 E-value=0.051 Score=52.58 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|..|+|||||++.+..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999984
No 390
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.05 E-value=0.033 Score=51.26 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+..|+|+|..|+|||||++.+..-
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCC
Confidence 34677999999999999999999874
No 391
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.05 E-value=0.13 Score=43.48 Aligned_cols=43 Identities=5% Similarity=0.011 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCC--CceEEEEeCCCCCHH
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHF--DKKIWVCVSEPFDDI 244 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F--d~~~wV~Vs~~~~~~ 244 (251)
.++-|+|..|+|||||+-.+... ..+.+ ..++||.--..++..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH
Confidence 37899999999999998887664 22221 356888877777654
No 392
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.01 E-value=0.069 Score=45.29 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.++..|+|+.|.|||||+..|+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5788999999999999999874
No 393
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.99 E-value=0.054 Score=47.08 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-..++|+|..|+|||||.+.+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999884
No 394
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.92 E-value=0.057 Score=44.95 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+..|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 44778999999999999999999765
No 395
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.89 E-value=0.064 Score=43.57 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=19.9
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISIT-GMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~-G~gGvGKTTLa~~v~~ 221 (251)
...++|+|+ +-||+||||+|-.+..
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~ 50 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILAT 50 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHH
Confidence 457899998 5589999999987755
No 396
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.01 E-value=0.019 Score=44.51 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||...+.++
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 445789999999999999877654
No 397
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.79 E-value=0.043 Score=43.08 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v 219 (251)
.--|.|+|..|+|||||++.+
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTB
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346889999999999999983
No 398
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.79 E-value=0.12 Score=47.79 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHH-HHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046918 201 IISITGMGGIGKTT-LARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 201 vi~I~G~gGvGKTT-La~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
+.-|+|++|.|||+ ++..|+. -++. +.+|.|+...+--+..|+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv~a~TN~AvD~i~e 251 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLCCAPSNIAVDNLVE 251 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEEEESSHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEEEcCchHHHHHHHH
Confidence 55689999999996 4444544 2222 3467777766555555544
No 399
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.75 E-value=0.058 Score=48.65 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.++.|.|..|+|||||++.+...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 569999999999999999999874
No 400
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.74 E-value=0.042 Score=48.17 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...++|+|..|+|||||.+.+...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 456999999999999999999875
No 401
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.68 E-value=0.0096 Score=47.85 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+++|+|+.|+|||||++.|+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3668899999999999998765
No 402
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.66 E-value=0.074 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.++..|+|+.|.|||||...|+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999999987
No 403
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.66 E-value=0.067 Score=46.92 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+.+|+|+.|.|||||...|+-
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999874
No 404
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.59 E-value=0.043 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+++|+|..|.|||||++.+..-
T Consensus 700 eivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 405
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.56 E-value=0.2 Score=44.04 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
....-|+|+|..|+|||||...+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 346788999999999999999998764
No 406
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.39 E-value=0.14 Score=42.85 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+-++|+.|+||||+|+.+.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 67888999999999999999976
No 407
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.29 E-value=0.057 Score=45.46 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 046918 200 IIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.+.+|+|..|.|||||...|+
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 489999999999999999998
No 408
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.25 E-value=0.094 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.7
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISIT-GMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~-G~gGvGKTTLa~~v~~ 221 (251)
...++|+|+ |-||+||||+|-.+-.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 458899999 7799999998877654
No 409
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=92.14 E-value=0.072 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 046918 201 IISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.|.|+|..|+|||||+..+.+..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC
T ss_pred eEEEECCCCccHHHHHHHHhCCC
Confidence 68999999999999999988753
No 410
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=92.14 E-value=0.031 Score=48.58 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 046918 201 IISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~ 220 (251)
+++|+|..|.|||||.+.|+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999983
No 411
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.06 E-value=0.067 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=18.4
Q ss_pred CEEEEEEc---CCCCcHHHHHHHHhc
Q 046918 199 PIIISITG---MGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G---~gGvGKTTLa~~v~~ 221 (251)
.++|+|++ -||+||||++-.+..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~ 59 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAY 59 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHH
Confidence 35677776 899999999887664
No 412
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.04 E-value=0.11 Score=41.00 Aligned_cols=26 Identities=38% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 196 TQLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 196 ~~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+.--||+.|.-|+||||+++.+-.
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999998653
No 413
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.97 E-value=0.1 Score=41.55 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+|+|-|+.|+||||+++.+..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~ 36 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAE 36 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999998765
No 414
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.91 E-value=0.055 Score=50.37 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 046918 200 IIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v 219 (251)
.+++|+|+.|.|||||++.+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEeeCCCCHHHHHHHH
Confidence 47999999999999999765
No 415
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.87 E-value=0.11 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+++-+.|.||+||||+|-.+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 368888999999999999987654
No 416
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.75 E-value=0.1 Score=41.47 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.++-|.|.+|+||||||..+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 56888999999999999987543
No 417
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.70 E-value=0.11 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...+|.+.|+.|+||||+|+.+...
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~ 395 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATM 395 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998763
No 418
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.69 E-value=0.15 Score=44.99 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+-|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999998874
No 419
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=91.67 E-value=0.16 Score=46.45 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
..+.+|+|+|..|+|||||...+....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 448899999999999999999998863
No 420
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.55 E-value=0.1 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHH
Q 046918 197 QLPIIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v 219 (251)
....-|-|.|.||+||||+++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 34566789999999999999984
No 421
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=91.55 E-value=0.1 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..|+|+|..|+|||||.+.+.+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999999875
No 422
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.34 E-value=0.023 Score=43.93 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||.+.+.++
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988765
No 423
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.32 E-value=0.092 Score=48.84 Aligned_cols=18 Identities=39% Similarity=0.746 Sum_probs=16.5
Q ss_pred CEEEEEEcCCCCcHHHHH
Q 046918 199 PIIISITGMGGIGKTTLA 216 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa 216 (251)
-.+++|+|+.|+|||||+
T Consensus 44 Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 44 GKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHh
Confidence 458999999999999996
No 424
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.31 E-value=0.11 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|.|||||.+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 36899999999999999998764
No 425
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.31 E-value=0.12 Score=42.00 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=18.5
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHhc
Q 046918 199 PIIISIT-GMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~-G~gGvGKTTLa~~v~~ 221 (251)
.++|+|+ +-||+||||+|-.+..
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~ 41 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAV 41 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHH
Confidence 5688887 5689999999887654
No 426
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.30 E-value=0.1 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999873
No 427
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.27 E-value=0.11 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
...|+|+|..|+|||||...+...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 568999999999999999998774
No 428
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.17 E-value=0.13 Score=41.99 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 200 IIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
..+.++|..|+|||||...+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 568899999999999999998753
No 429
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=91.13 E-value=0.12 Score=43.14 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.--|.|+|..|+|||||+..+.++
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCChHHHHHHHHhC
Confidence 456889999999999999888764
No 430
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.13 E-value=0.15 Score=43.58 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+..|+|+|..|+|||||...+...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5779999999999999999999884
No 431
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.10 E-value=0.12 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.199 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.+++|+|+.|.|||||.+.+..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 56999999999999999999764
No 432
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.09 E-value=0.19 Score=42.46 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+-++|+.|+||||+|+.+.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHH
Confidence 45788999999999999998765
No 433
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=91.09 E-value=0.13 Score=41.60 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=20.9
Q ss_pred CCEEEEEEcCC---------CCcHHHHHHHHhc
Q 046918 198 LPIIISITGMG---------GIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~g---------GvGKTTLa~~v~~ 221 (251)
..--|.|+|.+ |+|||||++.+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 34568899999 9999999999887
No 434
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.04 E-value=0.11 Score=45.88 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCCC----ceEEEEeCCCC
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHFD----KKIWVCVSEPF 241 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd----~~~wV~Vs~~~ 241 (251)
.-++|+|..|+|||||+..|.+.... +-| .++++-+.+..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~ 195 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITF 195 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCc
Confidence 34689999999999999999885433 223 56777777654
No 435
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.99 E-value=0.13 Score=46.64 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=34.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF-DDIRIAKA 249 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~-~~~~i~~~ 249 (251)
-.-++|+|..|+|||+|++.+.+.. +-+.++++-+.+.. .+.+++++
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred CCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 5678999999999999999998742 34678888888663 34444443
No 436
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.77 E-value=0.21 Score=42.46 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKA 249 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~~ 249 (251)
-.++-|.|..|+||||||..+..+....+ ..++|++. .-+..++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~R 92 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALR 92 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHH
Confidence 45888999999999999999877532211 24455543 4445555443
No 437
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.70 E-value=0.15 Score=39.10 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.-+.|.|..|+||||||.....
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45678999999999999988655
No 438
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=90.67 E-value=0.14 Score=46.27 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.--|+++|.+|+|||||.+.+.+..
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999988753
No 439
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.63 E-value=0.2 Score=44.12 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...++..|.|.+|.||||+.+...+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 5689999999999999999999876
No 440
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=90.61 E-value=0.15 Score=47.40 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918 197 QLPIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.....|+|+|..|+|||||+..+.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~ 30 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALL 30 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHH
Confidence 457899999999999999999987
No 441
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.57 E-value=0.2 Score=47.48 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=35.4
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.+.|.++.+++|.+.+.-.-.....-.... -...+-|-++|+.|.|||.||+.|.+.
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g----~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFG----MTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSC----CCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcC----CCCCceEEEecCCCCCchHHHHHHHHH
Confidence 577888888887766543211000000000 122344669999999999999999985
No 442
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.55 E-value=0.2 Score=43.43 Aligned_cols=42 Identities=21% Similarity=0.061 Sum_probs=28.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccc-cCCCceEEEEeCCCC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVS-AHFDKKIWVCVSEPF 241 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~-~~Fd~~~wV~Vs~~~ 241 (251)
-.-++|+|..|+|||||++.|.+..... ..+.+ +.+-|.+..
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~ 217 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERP 217 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCc
Confidence 4578999999999999999888742211 12333 456666654
No 443
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.52 E-value=0.2 Score=41.06 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=20.4
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGM-GGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~-gGvGKTTLa~~v~~ 221 (251)
...++|.|+|. ||+||||+|-.+..
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~ 105 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAV 105 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHH
Confidence 44789999976 89999999887654
No 444
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.50 E-value=0.29 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
+++-|.|.+|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999998763
No 445
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.44 E-value=0.19 Score=42.65 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=19.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+++-+-|-||+||||+|-.+..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 67777889999999999887654
No 446
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.28 E-value=0.19 Score=41.76 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.2
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHhc
Q 046918 198 LPIIISITGM-GGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~-gGvGKTTLa~~v~~ 221 (251)
..++|.|.|. ||+||||+|-.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~ 127 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAA 127 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHH
Confidence 4689999986 89999999877665
No 447
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.24 E-value=0.14 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.+++|+|..|.|||||++.+..-
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 448
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.13 E-value=0.42 Score=44.01 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046918 201 IISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAK 248 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~ 248 (251)
+.-|.|++|.||||++..+... ....-..++.++...+--+..+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~--l~~~~~~~ilv~a~tn~A~~~l~~ 242 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH--LARQGNGPVLVCAPSNIAVDQLTE 242 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHTSSSCCEEEEESSHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEeCcHHHHHHHHH
Confidence 5678999999999987766542 111123567777666555444443
No 449
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=90.06 E-value=0.17 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918 197 QLPIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
...+.|+|+|.+|+|||||+..+.
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHH
T ss_pred hcCCEEEEECCCCCcHHHHHHHHH
Confidence 347899999999999999999884
No 450
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=90.00 E-value=0.1 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=11.8
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHh
Q 046918 197 QLPIIISIT-GMGGIGKTTLARLIF 220 (251)
Q Consensus 197 ~~~~vi~I~-G~gGvGKTTLa~~v~ 220 (251)
...++|+|+ |-||+||||++-.+-
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA 133 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLA 133 (403)
T ss_dssp CSCEEEEECCC--------CHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHH
Confidence 457899999 779999999776654
No 451
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.97 E-value=0.56 Score=38.63 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.-.++++|..|+|||||...+.+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 4578999999999999999998753
No 452
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=89.91 E-value=0.21 Score=45.42 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
.....|+|+|..|+|||||.+.+....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 347899999999999999999998763
No 453
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.79 E-value=0.23 Score=44.93 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=35.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH-HHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD-IRIAKA 249 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~-~~i~~~ 249 (251)
-.-++|+|..|+|||+|++.+.+. .+-+.++++-+.+..+. .+++++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 557899999999999999998763 23467888889887643 344443
No 454
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=89.66 E-value=0.21 Score=43.05 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 198 LPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....|.|=|.-|+||||+++.+.+.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~ 72 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVAL 72 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999884
No 455
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.64 E-value=0.25 Score=41.49 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.++-+-|-||+||||+|-.+-.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~ 36 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATAL 36 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHH
Confidence 4555558999999999987654
No 456
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.62 E-value=0.26 Score=41.91 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=17.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..++-+-|-||+||||+|-.+-.
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHH
Confidence 44555558999999999877654
No 457
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.62 E-value=0.16 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-..++|+|..|.|||||++.+..-
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CcEEEEEecCCCcHHHHHHHhccc
Confidence 458999999999999999999874
No 458
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.59 E-value=0.11 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-..|+|||..|.|||||++.+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 34799999999999999999987
No 459
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.52 E-value=0.18 Score=48.66 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=19.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v 219 (251)
-.+++|+|+.|.|||||++.|
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999998
No 460
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=89.51 E-value=0.36 Score=42.57 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..+.||+|+|..++||+||+..+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4599999999999999999999974
No 461
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=89.39 E-value=0.15 Score=43.34 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 046918 200 IIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.-|+|+|..++|||||...+.+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEE
T ss_pred CeeeeeCCCCCCHHHHHHHHHcC
Confidence 35899999999999999998875
No 462
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.33 E-value=0.22 Score=43.90 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=27.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
-.++-|.|.+|+||||||..+..+...... ..++|++.-
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE 238 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE 238 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC
Confidence 468899999999999999998775322111 245665543
No 463
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.31 E-value=0.15 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
-.+++|+|+.|.|||||.+.|.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHH
Confidence 5699999999999999999875
No 464
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.21 E-value=0.25 Score=39.30 Aligned_cols=23 Identities=30% Similarity=0.023 Sum_probs=19.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
-.++-|+|..|+||||++-.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHH
Confidence 57889999999999998876655
No 465
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=89.09 E-value=0.26 Score=41.94 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
..+.-|+|+|..|+|||||...+...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999998775
No 466
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=88.96 E-value=0.14 Score=49.51 Aligned_cols=20 Identities=45% Similarity=0.745 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 046918 200 IIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v 219 (251)
.+++|+|..|.|||||++.+
T Consensus 669 eivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 669 VLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 38999999999999999985
No 467
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=88.81 E-value=0.22 Score=44.97 Aligned_cols=39 Identities=21% Similarity=0.117 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF 241 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~ 241 (251)
-.-++|+|..|+|||+|++.+.+.. +-+.++++-+.+..
T Consensus 221 Gqr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER~ 259 (578)
T 3gqb_A 221 GGTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGERG 259 (578)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred CCEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence 4578999999999999999998742 33677788887653
No 468
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.79 E-value=0.57 Score=41.27 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
....-|+++|.+|+|||||...+...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC
Confidence 44678899999999999999998865
No 469
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.79 E-value=0.24 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=19.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v 219 (251)
-.+++|+|+.|.|||||++.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999998
No 470
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.70 E-value=0.48 Score=42.36 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=32.7
Q ss_pred CEEEEEEcCCCCcHHHH-HHHHhcCcccccCCCc-eEEEEeCCCCC-HHHHHH
Q 046918 199 PIIISITGMGGIGKTTL-ARLIFNDNVVSAHFDK-KIWVCVSEPFD-DIRIAK 248 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTL-a~~v~~d~~v~~~Fd~-~~wV~Vs~~~~-~~~i~~ 248 (251)
-.-++|+|..|+|||+| +..|.|.. .-|. ++++-+.+..+ +.++++
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~ 223 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIID 223 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHH
Confidence 34688999999999999 56888853 3563 57888887663 334433
No 471
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.69 E-value=0.32 Score=42.85 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=27.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs 238 (251)
-.++-|.|.+|+||||||..+..+.-.++ ..++|++.-
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC
Confidence 46889999999999999999887533321 245665543
No 472
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=88.65 E-value=0.24 Score=42.30 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=17.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHH
Q 046918 199 PIIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v 219 (251)
..-|-+.|.||+||||+++++
T Consensus 9 ~~k~lllG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 9 IRKLLLLGAGESGKSTIFKQI 29 (354)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ceeEEEECCCCCcHHHHHHHH
Confidence 445789999999999999873
No 473
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=88.51 E-value=0.26 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 198 LPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 198 ~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....|+|+|..|+|||||+..+..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHh
Confidence 378899999999999999999875
No 474
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.38 E-value=0.45 Score=42.48 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCCcHHHH-HHHHhcCcccccCCCc-eEEEEeCCCCC
Q 046918 199 PIIISITGMGGIGKTTL-ARLIFNDNVVSAHFDK-KIWVCVSEPFD 242 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTL-a~~v~~d~~v~~~Fd~-~~wV~Vs~~~~ 242 (251)
-.-++|+|..|+|||+| +..|.|.. +-|. ++++-|.+..+
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~ 203 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQS 203 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcch
Confidence 44579999999999999 56888853 3463 57888887653
No 475
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.28 E-value=0.5 Score=37.49 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 046918 200 IIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~ 220 (251)
..+.|.|..|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 378899999999998665543
No 476
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.28 E-value=0.35 Score=41.46 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.++..|+|..|.|||||.-.||
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999987
No 477
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.24 E-value=0.29 Score=44.64 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=18.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHh
Q 046918 199 PIIISITGMGGIGKTTLARLIF 220 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~ 220 (251)
.+++-+.|.||+||||+|-.+.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA 29 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATA 29 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHH
Confidence 5678888999999999987753
No 478
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=88.18 E-value=0.3 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...+.|+|+|.+|+|||||+..+..
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 5588999999999999999999853
No 479
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=88.14 E-value=0.14 Score=48.75 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHH-Hh
Q 046918 200 IIISITGMGGIGKTTLARL-IF 220 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~-v~ 220 (251)
.+++|+|..|+|||||++. ++
T Consensus 524 eiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 524 VMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp SEEEEECCTTSSHHHHCCCCCH
T ss_pred CEEEEEcCCCcCHHHHHHHHHH
Confidence 3899999999999999996 44
No 480
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.13 E-value=0.8 Score=39.20 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=31.2
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|......++...+..-. ..... +-|.|..|+||+++|+.+++.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a--------------~~~~~-vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA--------------KSKAP-VLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH--------------TSCSC-EEEECCTTSSHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhh--------------ccchh-heEEeCCCchHHHHHHHHHHh
Confidence 57787766666555443221 11133 448899999999999999974
No 481
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=88.12 E-value=0.29 Score=42.47 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=21.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
...-.|+++|..|+|||||.+.+..
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999976
No 482
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.12 E-value=0.28 Score=42.28 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 199 PIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-.-+.|+|+.|.|||||++.+...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 345789999999999999998763
No 483
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=87.99 E-value=0.35 Score=40.73 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=17.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..++-+-|-||+||||+|-.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~ 41 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAI 41 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHH
Confidence 44555669999999999877654
No 484
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=87.89 E-value=0.38 Score=39.76 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.1
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGM-GGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~-gGvGKTTLa~~v~~ 221 (251)
...++|.|+|. ||+||||+|-.+..
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~ 115 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAA 115 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHH
Confidence 34789999976 79999999887654
No 485
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=87.86 E-value=0.14 Score=49.46 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 046918 200 IIISITGMGGIGKTTLARLI 219 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v 219 (251)
.+++|+|..|.|||||++.+
T Consensus 651 eiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 651 TFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SEEECCBCTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 37999999999999999985
No 486
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.76 E-value=0.46 Score=42.51 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=34.0
Q ss_pred CEEEEEEcCCCCcHHHH-HHHHhcCccc----ccCCC-ceEEEEeCCCCC-HHHHHH
Q 046918 199 PIIISITGMGGIGKTTL-ARLIFNDNVV----SAHFD-KKIWVCVSEPFD-DIRIAK 248 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTL-a~~v~~d~~v----~~~Fd-~~~wV~Vs~~~~-~~~i~~ 248 (251)
-.-++|+|..|+|||+| +..|.|.... .++-| .++++-+.+..+ +.++.+
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~ 218 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVK 218 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHH
Confidence 44678999999999999 5678875432 12355 478888887663 334443
No 487
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=87.48 E-value=0.23 Score=44.06 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccccC--CCceEEEEeCCCC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVSAH--FDKKIWVCVSEPF 241 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~--Fd~~~wV~Vs~~~ 241 (251)
-.-++|+|..|+|||+|++.|.++....+. =+.++++-+.+..
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~ 196 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN 196 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc
Confidence 345678899999999999999886543221 1356777777655
No 488
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=87.45 E-value=0.29 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 046918 201 IISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 201 vi~I~G~gGvGKTTLa~~v~~d 222 (251)
-|+|+|..|+|||||...+.+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3899999999999999998764
No 489
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.17 E-value=0.31 Score=44.75 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
+++-|.|.+|+||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5788999999999999887654
No 490
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=87.03 E-value=0.33 Score=43.17 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918 200 IIISITGMGGIGKTTLARLIFNDN 223 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~ 223 (251)
--|.|+|.+|+|||||...+....
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Confidence 457799999999999999987653
No 491
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=86.91 E-value=0.49 Score=42.32 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=32.6
Q ss_pred CEEEEEEcCCCCcHHHH-HHHHhcCcccccCCCc-eEEEEeCCCCC-HHHHHH
Q 046918 199 PIIISITGMGGIGKTTL-ARLIFNDNVVSAHFDK-KIWVCVSEPFD-DIRIAK 248 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTL-a~~v~~d~~v~~~Fd~-~~wV~Vs~~~~-~~~i~~ 248 (251)
-.-++|+|..|+|||+| +..|.|.. .-|. ++++-+.+..+ +.++.+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~ 211 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVT 211 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHH
Confidence 34578999999999999 56888853 2453 57888887663 334443
No 492
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=86.89 E-value=0.38 Score=42.14 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=20.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
....-|+|+|..|+|||||+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~ 46 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLH 46 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHh
Confidence 3356789999999999999988754
No 493
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.66 E-value=0.38 Score=40.37 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 046918 200 IIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.-+.|.|..|+||||||.....
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHh
Confidence 5688999999999999998775
No 494
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=86.60 E-value=0.33 Score=45.31 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918 197 QLPIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
.+...|+|+|..|+|||||+..+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 5588999999999999999999873
No 495
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=86.40 E-value=0.25 Score=43.60 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhcCcccc--------cCCC-ceEEEEeCCCC
Q 046918 199 PIIISITGMGGIGKTTLARLIFNDNVVS--------AHFD-KKIWVCVSEPF 241 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~--------~~Fd-~~~wV~Vs~~~ 241 (251)
-.-++|+|..|+|||||+..|.+..... ++=+ .++++-+.+..
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~ 198 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQ 198 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCch
Confidence 3456889999999999999998864431 1112 55677777654
No 496
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=86.39 E-value=0.48 Score=40.41 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=16.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHhc
Q 046918 199 PIIISITGMGGIGKTTLARLIFN 221 (251)
Q Consensus 199 ~~vi~I~G~gGvGKTTLa~~v~~ 221 (251)
..++-+-|-||+||||+|-.+--
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~ 40 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAI 40 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Confidence 34444559999999998877554
No 497
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=86.39 E-value=0.57 Score=40.39 Aligned_cols=46 Identities=26% Similarity=0.198 Sum_probs=32.6
Q ss_pred ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918 162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d 222 (251)
.++|......++.+.+..-. ..+..| -|.|..|+|||++|+.++..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a--------------~~~~~v-li~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS--------------CAECPV-LITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT--------------TCCSCE-EEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhc--------------CCCCCe-EEecCCCcCHHHHHHHHHHh
Confidence 46776666666666554322 123445 79999999999999999874
No 498
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.14 E-value=0.53 Score=48.22 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918 200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD 243 (251)
Q Consensus 200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~ 243 (251)
+++-|+|+.|+|||+||+.+.+ +-...=...+||.+...++.
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~--~~~~~g~~~~fi~~~~~~~~ 1124 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDP 1124 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCH
T ss_pred CEEEEEcCCCCChHHHHHHHHH--HhhhcCCceeEEEcccchHH
No 499
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=86.12 E-value=0.32 Score=43.33 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 046918 202 ISITGMGGIGKTTLARLIFND 222 (251)
Q Consensus 202 i~I~G~gGvGKTTLa~~v~~d 222 (251)
|.|+|..|+|||||...+.+.
T Consensus 236 V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999998775
No 500
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=86.08 E-value=0.38 Score=40.88 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHH-HHHhcCc
Q 046918 197 QLPIIISITGMGGIGKTTLA-RLIFNDN 223 (251)
Q Consensus 197 ~~~~vi~I~G~gGvGKTTLa-~~v~~d~ 223 (251)
.+...|.|=|.-|+||||++ +.+.+..
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l 37 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFA 37 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34678888999999999999 9998853
Done!