BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046919
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UVA|A Chain A, Crystal Structure Of L-Rhamnose Isomerase Mutant W38f From
Bacillus Halodurans In Complex With Mn
pdb|3UVA|B Chain B, Crystal Structure Of L-Rhamnose Isomerase Mutant W38f From
Bacillus Halodurans In Complex With Mn
pdb|3UVA|C Chain C, Crystal Structure Of L-Rhamnose Isomerase Mutant W38f From
Bacillus Halodurans In Complex With Mn
pdb|3UVA|D Chain D, Crystal Structure Of L-Rhamnose Isomerase Mutant W38f From
Bacillus Halodurans In Complex With Mn
Length = 424
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 74 GAGINMNNQLLNHQYIESGIVNMSGDKESGVKYLCKCIYTVGI---------TCCNYISN 124
G G++ N L +H+ + G+ D+ ++ CI + I T C ++N
Sbjct: 131 GLGLDFNPTLFSHEKAKDGLTLAHPDQAIRQFWIDHCIASRKIGEYFGKELETPC--LTN 188
Query: 125 YLLPQLY---PTSRLHTPDQYARVLTQQYSQQLKTLYNYGARKVVLFGL 170
+P Y P+ RL + L Q ++ ++ YN A + LFG+
Sbjct: 189 IWIPDGYKDTPSDRLTPRKRLKESLDQIFAAEINEAYNLDAVESKLFGI 237
>pdb|3P14|A Chain A, Crystal Structure Of L-Rhamnose Isomerase With A Novel
High Thermo- Stability From Bacillus Halodurans
pdb|3P14|B Chain B, Crystal Structure Of L-Rhamnose Isomerase With A Novel
High Thermo- Stability From Bacillus Halodurans
pdb|3P14|C Chain C, Crystal Structure Of L-Rhamnose Isomerase With A Novel
High Thermo- Stability From Bacillus Halodurans
pdb|3P14|D Chain D, Crystal Structure Of L-Rhamnose Isomerase With A Novel
High Thermo- Stability From Bacillus Halodurans
pdb|3UU0|A Chain A, Crystal Structure Of L-Rhamnose Isomerase From Bacillus
Halodurans In Complex With Mn
pdb|3UU0|B Chain B, Crystal Structure Of L-Rhamnose Isomerase From Bacillus
Halodurans In Complex With Mn
pdb|3UU0|C Chain C, Crystal Structure Of L-Rhamnose Isomerase From Bacillus
Halodurans In Complex With Mn
pdb|3UU0|D Chain D, Crystal Structure Of L-Rhamnose Isomerase From Bacillus
Halodurans In Complex With Mn
Length = 424
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 74 GAGINMNNQLLNHQYIESGIVNMSGDKESGVKYLCKCIYTVGI---------TCCNYISN 124
G G++ N L +H+ + G+ D+ ++ CI + I T C ++N
Sbjct: 131 GLGLDFNPTLFSHEKAKDGLTLAHPDQAIRQFWIDHCIASRKIGEYFGKELETPC--LTN 188
Query: 125 YLLPQLY---PTSRLHTPDQYARVLTQQYSQQLKTLYNYGARKVVLFGL 170
+P Y P+ RL + L Q ++ ++ YN A + LFG+
Sbjct: 189 IWIPDGYKDTPSDRLTPRKRLKESLDQIFAAEINEAYNLDAVESKLFGI 237
>pdb|3UXI|A Chain A, Crystal Structure Of L-Rhamnose Isomerase W38a Mutant From
Bacillus Halodurans
pdb|3UXI|B Chain B, Crystal Structure Of L-Rhamnose Isomerase W38a Mutant From
Bacillus Halodurans
pdb|3UXI|C Chain C, Crystal Structure Of L-Rhamnose Isomerase W38a Mutant From
Bacillus Halodurans
pdb|3UXI|D Chain D, Crystal Structure Of L-Rhamnose Isomerase W38a Mutant From
Bacillus Halodurans
Length = 424
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 74 GAGINMNNQLLNHQYIESGIVNMSGDKESGVKYLCKCIYTVGI---------TCCNYISN 124
G G++ N L +H+ + G+ D+ ++ CI + I T C ++N
Sbjct: 131 GLGLDFNPTLFSHEKAKDGLTLAHPDQAIRQFWIDHCIASRKIGEYFGKELETPC--LTN 188
Query: 125 YLLPQLY---PTSRLHTPDQYARVLTQQYSQQLKTLYNYGARKVVLFGL 170
+P Y P+ RL + L Q ++ ++ YN A + LFG+
Sbjct: 189 IWIPDGYKDTPSDRLTPRKRLKESLDQIFAAEINEAYNLDAVESKLFGI 237
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 79 MNNQLLNHQYIESGIVNMSGDKESGVKYLCKCIYTVGITCCNYISN--YLLPQLYPTSRL 136
+N ++ Y +G +N+S DKE+ +K L ++ + CC I ++L ++ T +
Sbjct: 38 VNYDIIVRHYNYTGKLNISADKENSIK-LTSVVFI--LICCFIILENIFVLLTIWKTKKF 94
Query: 137 HTPDQY 142
H P Y
Sbjct: 95 HRPMYY 100
>pdb|2C71|A Chain A, The Structure Of A Family 4 Acetyl Xylan Esterase From
Clostridium Thermocellum In Complex With A Magnesium
Ion.
pdb|2C79|A Chain A, The Structure Of A Family 4 Acetyl Xylan Esterase From
Clostridium Thermocellum In Complex With A Colbalt Ion
Length = 216
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 35 LGFDNPIPSFATASGLDILKGVNYASG----SSGIRDETGQHLGAGINMNNQLLNHQYIE 90
L FD+ + TA LD L N + + D T + +N +++ NH +
Sbjct: 9 LTFDDGPDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHSWSY 68
Query: 91 SGIVNMSGDK 100
SG+ NMS D+
Sbjct: 69 SGMANMSPDQ 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,563,996
Number of Sequences: 62578
Number of extensions: 426228
Number of successful extensions: 892
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 5
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)