Query 046920
Match_columns 213
No_of_seqs 117 out of 1284
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02473 glutathione S-transfe 100.0 3.2E-41 6.9E-46 252.1 21.3 209 1-210 1-211 (214)
2 PLN02395 glutathione S-transfe 100.0 1.7E-39 3.7E-44 242.9 22.2 210 1-212 1-212 (215)
3 PRK09481 sspA stringent starva 100.0 6.6E-40 1.4E-44 244.2 19.8 193 2-210 9-202 (211)
4 PRK15113 glutathione S-transfe 100.0 3.9E-38 8.4E-43 235.2 19.0 202 2-212 4-210 (214)
5 PRK13972 GSH-dependent disulfi 100.0 8E-38 1.7E-42 233.8 19.7 197 3-210 1-205 (215)
6 PRK10542 glutathionine S-trans 100.0 1.7E-36 3.6E-41 224.5 18.2 194 4-211 1-198 (201)
7 COG0625 Gst Glutathione S-tran 100.0 5E-36 1.1E-40 223.5 19.6 194 4-205 1-199 (211)
8 KOG0406 Glutathione S-transfer 100.0 2.7E-36 5.9E-41 219.9 16.1 194 4-211 10-212 (231)
9 KOG0868 Glutathione S-transfer 100.0 2.6E-36 5.6E-41 207.4 14.9 197 3-208 5-205 (217)
10 TIGR01262 maiA maleylacetoacet 100.0 8.8E-36 1.9E-40 222.1 18.9 200 5-210 1-204 (210)
11 PRK11752 putative S-transferas 100.0 3.3E-35 7.1E-40 225.2 19.7 200 3-211 44-259 (264)
12 KOG0867 Glutathione S-transfer 100.0 2.7E-35 5.8E-40 220.4 17.7 202 4-210 3-209 (226)
13 PRK10357 putative glutathione 100.0 9.7E-35 2.1E-39 215.2 18.1 195 4-208 1-198 (202)
14 PTZ00057 glutathione s-transfe 100.0 1.3E-32 2.8E-37 204.1 18.2 193 1-212 1-201 (205)
15 TIGR00862 O-ClC intracellular 100.0 1.2E-31 2.5E-36 200.4 17.8 179 10-209 17-219 (236)
16 PRK10387 glutaredoxin 2; Provi 100.0 4.6E-32 1E-36 202.0 14.5 189 4-204 1-207 (210)
17 PLN02378 glutathione S-transfe 100.0 1E-31 2.3E-36 200.2 14.2 176 9-210 17-199 (213)
18 PLN02817 glutathione dehydroge 100.0 8.1E-31 1.8E-35 200.0 16.2 176 9-209 70-250 (265)
19 KOG1695 Glutathione S-transfer 100.0 2E-30 4.4E-35 188.1 15.9 199 1-213 1-203 (206)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 1E-29 2.2E-34 188.9 14.5 187 5-204 1-206 (209)
21 KOG4420 Uncharacterized conser 100.0 1E-27 2.2E-32 174.4 13.8 207 3-211 26-288 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 1.9E-24 4.1E-29 183.6 16.8 156 1-203 1-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 2.6E-21 5.7E-26 137.2 13.6 179 10-209 19-204 (221)
24 cd03052 GST_N_GDAP1 GST_N fami 99.9 2.5E-21 5.5E-26 119.5 8.6 73 4-76 1-73 (73)
25 KOG3029 Glutathione S-transfer 99.8 9.1E-21 2E-25 139.8 11.0 193 3-200 90-354 (370)
26 cd03045 GST_N_Delta_Epsilon GS 99.8 1.2E-20 2.6E-25 117.2 8.7 74 4-77 1-74 (74)
27 cd03050 GST_N_Theta GST_N fami 99.8 3.4E-20 7.3E-25 115.8 9.4 76 4-79 1-76 (76)
28 PF13417 GST_N_3: Glutathione 99.8 1.6E-20 3.5E-25 116.8 7.9 73 6-81 1-73 (75)
29 cd03053 GST_N_Phi GST_N family 99.8 4.8E-20 1E-24 115.1 9.1 75 4-78 2-76 (76)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 3.6E-20 7.8E-25 115.8 8.1 75 3-79 1-77 (77)
31 cd03048 GST_N_Ure2p_like GST_N 99.8 6.5E-20 1.4E-24 115.9 9.2 77 3-80 1-80 (81)
32 cd03059 GST_N_SspA GST_N famil 99.8 8.1E-20 1.8E-24 113.2 9.2 73 4-79 1-73 (73)
33 cd03058 GST_N_Tau GST_N family 99.8 1.1E-19 2.4E-24 112.8 8.9 73 4-79 1-74 (74)
34 cd03056 GST_N_4 GST_N family, 99.8 1.4E-19 3E-24 112.2 8.5 73 4-76 1-73 (73)
35 cd03061 GST_N_CLIC GST_N famil 99.8 1.3E-19 2.9E-24 115.0 8.2 69 10-81 20-88 (91)
36 cd03047 GST_N_2 GST_N family, 99.8 1.7E-19 3.7E-24 111.7 8.4 73 4-76 1-73 (73)
37 KOG4244 Failed axon connection 99.8 5.9E-19 1.3E-23 129.6 11.6 176 11-201 60-273 (281)
38 cd03042 GST_N_Zeta GST_N famil 99.8 3.2E-19 6.8E-24 110.5 8.5 73 4-76 1-73 (73)
39 cd03057 GST_N_Beta GST_N famil 99.8 3.9E-19 8.5E-24 111.2 8.9 76 4-80 1-77 (77)
40 cd03051 GST_N_GTT2_like GST_N 99.8 2.6E-19 5.6E-24 111.2 8.0 73 4-76 1-74 (74)
41 cd03076 GST_N_Pi GST_N family, 99.8 3.2E-19 7E-24 110.3 7.2 71 4-77 2-72 (73)
42 cd03044 GST_N_EF1Bgamma GST_N 99.8 5.5E-19 1.2E-23 109.9 8.2 72 5-77 2-74 (75)
43 cd03046 GST_N_GTT1_like GST_N 99.8 9.3E-19 2E-23 109.3 9.2 76 4-80 1-76 (76)
44 cd03060 GST_N_Omega_like GST_N 99.8 9E-19 1.9E-23 107.8 8.2 68 5-75 2-70 (71)
45 cd03039 GST_N_Sigma_like GST_N 99.8 5.9E-19 1.3E-23 108.9 6.9 72 4-77 1-72 (72)
46 PF02798 GST_N: Glutathione S- 99.8 1.3E-18 2.8E-23 108.3 8.1 72 4-77 3-76 (76)
47 COG0435 ECM4 Predicted glutath 99.8 1.3E-18 2.9E-23 128.3 9.4 195 4-209 52-285 (324)
48 PF13409 GST_N_2: Glutathione 99.8 2.8E-18 6E-23 105.1 7.7 68 11-78 1-70 (70)
49 cd03187 GST_C_Phi GST_C family 99.8 7.4E-18 1.6E-22 114.1 10.5 117 92-208 2-118 (118)
50 cd03037 GST_N_GRX2 GST_N famil 99.8 2.7E-18 5.8E-23 105.7 7.5 70 4-77 1-71 (71)
51 cd03049 GST_N_3 GST_N family, 99.8 5E-18 1.1E-22 105.1 7.8 70 4-76 1-73 (73)
52 cd03038 GST_N_etherase_LigE GS 99.8 4.6E-18 9.9E-23 108.1 7.8 70 10-80 14-84 (84)
53 cd03055 GST_N_Omega GST_N fami 99.8 5.3E-18 1.2E-22 108.9 8.1 71 3-76 18-89 (89)
54 cd03075 GST_N_Mu GST_N family, 99.8 6.3E-18 1.4E-22 106.7 8.3 75 5-79 2-82 (82)
55 cd03080 GST_N_Metaxin_like GST 99.7 1E-17 2.3E-22 104.1 8.6 68 3-80 1-75 (75)
56 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.3E-17 2.8E-22 104.3 8.4 72 3-79 1-76 (77)
57 cd03077 GST_N_Alpha GST_N fami 99.7 3.2E-17 7E-22 102.8 8.4 72 3-80 1-77 (79)
58 COG2999 GrxB Glutaredoxin 2 [P 99.7 2.9E-16 6.2E-21 108.7 12.7 186 4-205 1-208 (215)
59 cd03188 GST_C_Beta GST_C famil 99.7 7E-17 1.5E-21 108.6 8.9 112 92-207 2-113 (114)
60 cd03043 GST_N_1 GST_N family, 99.7 7.6E-17 1.7E-21 99.6 8.2 67 9-76 7-73 (73)
61 cd03178 GST_C_Ure2p_like GST_C 99.7 3.6E-16 7.9E-21 105.0 9.5 112 92-208 1-112 (113)
62 cd03183 GST_C_Theta GST_C fami 99.7 8.6E-16 1.9E-20 105.2 10.9 119 92-211 1-123 (126)
63 cd03196 GST_C_5 GST_C family, 99.7 1.9E-16 4.1E-21 106.6 7.5 109 91-207 5-114 (115)
64 KOG2903 Predicted glutathione 99.7 2.8E-16 6E-21 115.1 8.3 194 4-209 38-287 (319)
65 cd00570 GST_N_family Glutathio 99.7 5E-16 1.1E-20 95.0 8.2 71 4-76 1-71 (71)
66 cd03190 GST_C_ECM4_like GST_C 99.7 5E-16 1.1E-20 108.4 8.9 110 91-210 3-118 (142)
67 cd03180 GST_C_2 GST_C family, 99.7 1.3E-15 2.9E-20 101.7 10.2 109 92-204 2-110 (110)
68 cd03186 GST_C_SspA GST_N famil 99.7 1.1E-15 2.4E-20 101.7 9.1 104 92-207 3-106 (107)
69 cd03209 GST_C_Mu GST_C family, 99.6 2.2E-15 4.7E-20 102.5 9.4 110 92-212 2-111 (121)
70 cd03177 GST_C_Delta_Epsilon GS 99.6 1.8E-15 3.9E-20 102.4 8.6 109 92-208 2-110 (118)
71 cd03191 GST_C_Zeta GST_C famil 99.6 3.3E-15 7.1E-20 101.6 9.9 114 92-209 3-118 (121)
72 cd03054 GST_N_Metaxin GST_N fa 99.6 1.8E-15 3.9E-20 93.2 7.8 65 4-78 1-72 (72)
73 cd03185 GST_C_Tau GST_C family 99.6 9E-16 1.9E-20 105.1 6.7 109 92-211 3-116 (126)
74 cd03181 GST_C_EFB1gamma GST_C 99.6 3.6E-15 7.8E-20 101.6 8.7 116 92-211 1-117 (123)
75 cd03189 GST_C_GTT1_like GST_C 99.6 4.3E-15 9.3E-20 100.7 8.5 112 89-202 3-119 (119)
76 cd03182 GST_C_GTT2_like GST_C 99.6 4.9E-15 1.1E-19 100.1 8.6 113 91-204 3-117 (117)
77 cd03184 GST_C_Omega GST_C fami 99.6 2.4E-15 5.3E-20 102.7 5.6 108 92-212 2-115 (124)
78 cd03208 GST_C_Alpha GST_C fami 99.6 8.7E-15 1.9E-19 101.5 7.9 112 92-212 3-117 (137)
79 cd03207 GST_C_8 GST_C family, 99.6 7.9E-15 1.7E-19 96.9 6.4 76 132-210 27-102 (103)
80 cd03210 GST_C_Pi GST_C family, 99.6 2.8E-14 6.1E-19 97.7 8.8 109 92-212 3-114 (126)
81 cd03179 GST_C_1 GST_C family, 99.5 3.2E-14 6.9E-19 94.2 8.3 105 91-199 1-105 (105)
82 cd03206 GST_C_7 GST_C family, 99.5 3E-14 6.6E-19 93.5 7.3 100 96-204 1-100 (100)
83 cd03200 GST_C_JTV1 GST_C famil 99.5 3.4E-14 7.3E-19 92.4 7.3 94 72-200 1-95 (96)
84 cd03195 GST_C_4 GST_C family, 99.5 5.2E-14 1.1E-18 94.6 7.6 110 92-210 3-113 (114)
85 cd03198 GST_C_CLIC GST_C famil 99.5 4E-14 8.7E-19 96.7 7.0 83 128-210 22-124 (134)
86 PF00043 GST_C: Glutathione S- 99.5 4.8E-14 1E-18 91.6 6.5 74 129-202 22-95 (95)
87 PF13410 GST_C_2: Glutathione 99.5 1.6E-13 3.5E-18 83.8 6.5 67 131-197 2-69 (69)
88 cd03204 GST_C_GDAP1 GST_C fami 99.5 2.7E-13 5.9E-18 89.8 7.3 78 127-204 21-111 (111)
89 cd03203 GST_C_Lambda GST_C fam 99.5 2.9E-13 6.3E-18 91.8 7.6 102 91-210 3-111 (120)
90 cd03194 GST_C_3 GST_C family, 99.5 1.1E-12 2.4E-17 88.1 10.2 69 136-209 42-113 (114)
91 cd03201 GST_C_DHAR GST_C famil 99.4 3.6E-13 7.9E-18 91.3 4.7 77 134-210 29-110 (121)
92 cd03079 GST_N_Metaxin2 GST_N f 99.4 1.6E-12 3.5E-17 79.4 6.8 60 10-78 15-74 (74)
93 cd00299 GST_C_family Glutathio 99.4 3E-12 6.5E-17 83.6 7.4 98 97-198 2-100 (100)
94 KOG3027 Mitochondrial outer me 99.3 5E-11 1.1E-15 84.9 11.8 178 12-200 34-247 (257)
95 cd03202 GST_C_etherase_LigE GS 99.3 8.1E-12 1.8E-16 85.1 7.2 69 133-201 56-124 (124)
96 cd03192 GST_C_Sigma_like GST_C 99.3 3.6E-12 7.8E-17 84.2 4.9 101 92-198 2-104 (104)
97 PRK10638 glutaredoxin 3; Provi 99.3 1.6E-11 3.4E-16 77.7 7.5 75 1-77 1-75 (83)
98 TIGR02190 GlrX-dom Glutaredoxi 99.3 3E-11 6.5E-16 75.6 7.4 71 3-76 9-79 (79)
99 cd03193 GST_C_Metaxin GST_C fa 99.3 2.4E-11 5.2E-16 77.8 6.8 66 134-199 18-88 (88)
100 PF14497 GST_C_3: Glutathione 99.2 1.1E-11 2.4E-16 81.1 5.2 66 132-200 32-99 (99)
101 KOG3028 Translocase of outer m 99.2 9.5E-10 2.1E-14 83.5 15.1 178 11-200 16-233 (313)
102 cd03197 GST_C_mPGES2 GST_C fam 99.2 6.7E-11 1.5E-15 81.6 5.9 64 137-200 81-145 (149)
103 cd03211 GST_C_Metaxin2 GST_C f 99.2 5E-11 1.1E-15 81.4 4.8 68 132-199 54-126 (126)
104 cd03029 GRX_hybridPRX5 Glutare 99.1 3.8E-10 8.3E-15 69.3 7.9 71 3-76 2-72 (72)
105 cd03078 GST_N_Metaxin1_like GS 99.1 3.5E-10 7.7E-15 69.4 7.6 58 11-78 15-72 (73)
106 cd03212 GST_C_Metaxin1_3 GST_C 99.1 2.7E-10 5.8E-15 78.8 6.5 71 130-200 59-134 (137)
107 cd03205 GST_C_6 GST_C family, 99.1 4.2E-10 9.1E-15 73.5 6.5 70 126-198 28-98 (98)
108 PF14834 GST_C_4: Glutathione 99.1 1.8E-09 3.8E-14 70.3 8.3 111 91-210 3-114 (117)
109 cd03027 GRX_DEP Glutaredoxin ( 99.0 2.4E-09 5.3E-14 65.9 6.8 69 3-73 2-70 (73)
110 TIGR02196 GlrX_YruB Glutaredox 98.9 8.2E-09 1.8E-13 63.3 6.7 71 3-75 1-73 (74)
111 PRK10329 glutaredoxin-like pro 98.9 9.5E-09 2.1E-13 64.4 6.7 61 3-66 2-62 (81)
112 cd02066 GRX_family Glutaredoxi 98.9 1.4E-08 3E-13 61.9 6.9 70 3-74 1-70 (72)
113 COG0695 GrxC Glutaredoxin and 98.8 2.2E-08 4.8E-13 62.5 6.8 73 3-76 2-75 (80)
114 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.6E-08 3.5E-13 61.9 6.1 63 3-67 1-63 (73)
115 cd03418 GRX_GRXb_1_3_like Glut 98.8 3E-08 6.5E-13 61.2 6.9 71 3-75 1-72 (75)
116 TIGR02181 GRX_bact Glutaredoxi 98.7 1E-07 2.3E-12 59.5 6.9 72 4-77 1-72 (79)
117 PRK11200 grxA glutaredoxin 1; 98.7 1.7E-07 3.8E-12 59.3 7.7 76 3-80 2-84 (85)
118 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.2E-07 2.5E-12 58.2 6.1 56 4-62 1-56 (72)
119 TIGR02200 GlrX_actino Glutared 98.6 1.9E-07 4.2E-12 57.8 5.7 64 3-68 1-66 (77)
120 PF00462 Glutaredoxin: Glutare 98.6 1.2E-07 2.7E-12 55.8 4.4 60 4-65 1-60 (60)
121 TIGR02189 GlrX-like_plant Glut 98.6 5.5E-07 1.2E-11 58.7 7.8 72 3-74 9-81 (99)
122 cd03419 GRX_GRXh_1_2_like Glut 98.5 5.2E-07 1.1E-11 56.6 7.2 75 3-77 1-76 (82)
123 PHA03050 glutaredoxin; Provisi 98.5 6.5E-07 1.4E-11 59.2 7.5 72 2-73 13-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.5 7.6E-07 1.6E-11 56.5 7.3 75 4-80 2-83 (86)
125 TIGR00365 monothiol glutaredox 98.3 5.5E-06 1.2E-10 53.7 7.1 71 3-75 13-88 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.3 7.3E-06 1.6E-10 51.5 7.5 74 4-77 1-77 (84)
127 cd03028 GRX_PICOT_like Glutare 98.1 1.6E-05 3.4E-10 50.9 7.1 71 3-75 9-84 (90)
128 PF10568 Tom37: Outer mitochon 98.0 3.3E-05 7.1E-10 47.0 6.8 55 11-75 13-71 (72)
129 PRK12759 bifunctional gluaredo 98.0 3.2E-05 6.8E-10 63.3 7.7 70 1-73 1-79 (410)
130 cd03031 GRX_GRX_like Glutaredo 97.8 9.7E-05 2.1E-09 51.5 6.7 69 4-74 2-80 (147)
131 KOG1147 Glutamyl-tRNA syntheta 97.8 4.7E-05 1E-09 62.5 5.3 117 62-208 45-162 (712)
132 cd03199 GST_C_GRX2 GST_C famil 97.7 0.00042 9.1E-09 46.9 8.7 65 135-203 60-124 (128)
133 PF04399 Glutaredoxin2_C: Glut 97.7 0.00014 3.1E-09 49.5 6.1 67 134-204 58-124 (132)
134 PRK10824 glutaredoxin-4; Provi 97.6 0.00035 7.7E-09 46.5 6.9 71 3-75 16-91 (115)
135 KOG1752 Glutaredoxin and relat 97.6 0.00067 1.4E-08 44.3 7.6 73 3-75 15-88 (104)
136 cd02973 TRX_GRX_like Thioredox 97.3 0.00098 2.1E-08 39.8 5.8 58 3-66 2-64 (67)
137 PTZ00062 glutaredoxin; Provisi 97.3 0.0013 2.7E-08 48.6 7.1 70 3-74 114-188 (204)
138 PRK01655 spxA transcriptional 97.1 0.00089 1.9E-08 45.9 4.3 33 3-35 1-33 (131)
139 cd03036 ArsC_like Arsenate Red 97.1 0.00077 1.7E-08 44.8 3.9 33 4-36 1-33 (111)
140 PRK10026 arsenate reductase; P 97.1 0.00099 2.2E-08 46.0 4.3 35 1-35 1-35 (141)
141 cd03032 ArsC_Spx Arsenate Redu 97.0 0.0012 2.6E-08 44.2 4.2 32 4-35 2-33 (115)
142 cd02977 ArsC_family Arsenate R 97.0 0.0012 2.5E-08 43.5 4.0 33 4-36 1-33 (105)
143 PRK13344 spxA transcriptional 96.7 0.0028 6E-08 43.5 4.3 34 3-36 1-34 (132)
144 PRK12559 transcriptional regul 96.7 0.0027 5.9E-08 43.5 4.1 34 3-36 1-34 (131)
145 TIGR01617 arsC_related transcr 96.6 0.0034 7.4E-08 42.1 4.1 32 4-35 1-32 (117)
146 COG4545 Glutaredoxin-related p 96.4 0.016 3.5E-07 34.9 5.5 66 1-66 1-77 (85)
147 cd03035 ArsC_Yffb Arsenate Red 96.3 0.0068 1.5E-07 39.8 3.9 33 4-36 1-33 (105)
148 cd03033 ArsC_15kD Arsenate Red 96.3 0.0075 1.6E-07 40.2 4.0 32 4-35 2-33 (113)
149 cd03030 GRX_SH3BGR Glutaredoxi 96.0 0.03 6.6E-07 35.8 5.7 68 4-73 2-79 (92)
150 PRK10853 putative reductase; P 95.9 0.014 3E-07 39.2 4.2 32 4-35 2-33 (118)
151 TIGR00412 redox_disulf_2 small 95.9 0.073 1.6E-06 32.6 7.0 54 4-65 3-60 (76)
152 COG1393 ArsC Arsenate reductas 95.8 0.017 3.8E-07 38.6 4.1 33 3-35 2-34 (117)
153 PF05768 DUF836: Glutaredoxin- 95.7 0.059 1.3E-06 33.5 6.2 55 3-62 1-57 (81)
154 COG0278 Glutaredoxin-related p 95.6 0.043 9.4E-07 35.1 4.9 64 9-74 27-91 (105)
155 TIGR01616 nitro_assoc nitrogen 95.5 0.028 6.1E-07 38.2 4.3 33 3-35 2-34 (126)
156 cd03026 AhpF_NTD_C TRX-GRX-lik 95.5 0.063 1.4E-06 34.1 5.7 57 3-65 15-76 (89)
157 TIGR00411 redox_disulf_1 small 95.2 0.2 4.2E-06 30.8 7.3 57 3-63 2-62 (82)
158 TIGR00014 arsC arsenate reduct 94.9 0.047 1E-06 36.4 3.9 32 4-35 1-32 (114)
159 cd03034 ArsC_ArsC Arsenate Red 94.9 0.049 1.1E-06 36.2 4.0 32 4-35 1-32 (112)
160 PF13192 Thioredoxin_3: Thiore 94.9 0.23 4.9E-06 30.4 6.7 56 4-67 3-62 (76)
161 PF11801 Tom37_C: Tom37 C-term 94.8 0.1 2.3E-06 37.3 5.7 41 139-179 112-156 (168)
162 cd01659 TRX_superfamily Thiore 94.4 0.11 2.4E-06 29.3 4.5 56 4-62 1-61 (69)
163 PHA02125 thioredoxin-like prot 93.8 0.32 6.9E-06 29.6 5.7 53 3-61 1-53 (75)
164 PF04908 SH3BGR: SH3-binding, 92.7 0.66 1.4E-05 30.0 6.0 69 1-72 1-84 (99)
165 PF11287 DUF3088: Protein of u 92.7 0.59 1.3E-05 30.7 5.7 67 11-80 23-108 (112)
166 TIGR03143 AhpF_homolog putativ 88.0 1.6 3.6E-05 37.6 6.2 56 3-64 479-539 (555)
167 PF03960 ArsC: ArsC family; I 87.8 0.71 1.5E-05 30.4 3.1 29 7-35 1-29 (110)
168 PF09635 MetRS-N: MetRS-N bind 85.1 0.64 1.4E-05 31.1 1.8 27 54-80 35-63 (122)
169 PRK15317 alkyl hydroperoxide r 84.4 1.1 2.5E-05 38.1 3.5 74 3-77 119-196 (517)
170 TIGR03140 AhpF alkyl hydropero 84.3 1 2.2E-05 38.4 3.1 64 3-67 120-183 (515)
171 COG3019 Predicted metal-bindin 79.2 5.5 0.00012 27.4 4.5 75 3-79 27-104 (149)
172 cd02953 DsbDgamma DsbD gamma f 78.8 6.2 0.00013 25.3 4.8 55 4-59 15-77 (104)
173 KOG1668 Elongation factor 1 be 77.0 2.1 4.6E-05 32.0 2.3 59 141-205 10-68 (231)
174 KOG0911 Glutaredoxin-related p 74.2 8.7 0.00019 28.8 4.8 65 9-75 151-215 (227)
175 cd02947 TRX_family TRX family; 72.7 18 0.00039 21.8 5.6 51 4-60 14-69 (93)
176 TIGR01295 PedC_BrcD bacterioci 69.7 30 0.00065 23.2 6.4 57 4-60 27-96 (122)
177 cd02975 PfPDO_like_N Pyrococcu 65.0 20 0.00043 23.6 4.7 53 4-60 25-81 (113)
178 COG5515 Uncharacterized conser 63.0 7.5 0.00016 22.5 2.0 21 4-24 3-27 (70)
179 TIGR02187 GlrX_arch Glutaredox 61.6 20 0.00044 26.6 4.8 55 4-62 137-194 (215)
180 PF04134 DUF393: Protein of un 60.7 37 0.0008 22.1 5.5 72 6-78 1-77 (114)
181 KOG2456 Aldehyde dehydrogenase 55.4 1.2E+02 0.0027 25.2 9.6 133 8-174 185-322 (477)
182 cd02949 TRX_NTR TRX domain, no 54.8 49 0.0011 20.7 5.1 52 4-59 17-72 (97)
183 cd03021 DsbA_GSTK DsbA family, 51.3 22 0.00048 26.2 3.5 35 2-36 1-39 (209)
184 PRK13947 shikimate kinase; Pro 51.1 22 0.00047 25.1 3.3 31 1-31 1-31 (171)
185 PF11732 Thoc2: Transcription- 46.8 39 0.00085 20.8 3.4 43 154-199 34-76 (77)
186 PRK13949 shikimate kinase; Pro 45.8 31 0.00067 24.6 3.4 32 1-32 1-32 (169)
187 cd04911 ACT_AKiii-YclM-BS_1 AC 45.3 24 0.00052 21.6 2.3 24 12-35 15-38 (76)
188 TIGR02681 phage_pRha phage reg 45.1 24 0.00053 23.2 2.5 26 55-80 2-28 (108)
189 cd02989 Phd_like_TxnDC9 Phosdu 44.5 89 0.0019 20.4 5.4 59 4-66 26-89 (113)
190 PF09314 DUF1972: Domain of un 42.6 28 0.00062 25.4 2.8 22 59-80 152-173 (185)
191 PRK11657 dsbG disulfide isomer 42.2 35 0.00076 26.2 3.4 20 4-23 121-140 (251)
192 PRK15371 effector protein YopJ 42.0 1E+02 0.0022 24.3 5.8 64 135-199 23-87 (287)
193 PRK10877 protein disulfide iso 40.9 39 0.00085 25.6 3.4 22 4-25 111-132 (232)
194 cd03020 DsbA_DsbC_DsbG DsbA fa 40.5 36 0.00077 24.8 3.1 21 4-24 81-101 (197)
195 KOG2824 Glutaredoxin-related p 39.9 52 0.0011 25.6 3.8 59 14-74 149-211 (281)
196 PHA03075 glutaredoxin-like pro 39.5 61 0.0013 21.7 3.6 66 3-79 4-70 (123)
197 PRK09266 hypothetical protein; 38.7 36 0.00078 26.2 3.0 60 21-80 200-259 (266)
198 PF15608 PELOTA_1: PELOTA RNA 38.7 68 0.0015 20.8 3.7 32 2-33 56-87 (100)
199 PRK08118 topology modulation p 38.1 49 0.0011 23.5 3.4 31 1-31 1-31 (167)
200 cd02951 SoxW SoxW family; SoxW 37.8 1.1E+02 0.0024 20.1 5.0 16 4-19 18-33 (125)
201 COG3011 Predicted thiol-disulf 37.3 1.4E+02 0.003 20.7 7.2 75 3-79 9-87 (137)
202 PF00085 Thioredoxin: Thioredo 36.5 1E+02 0.0023 19.0 6.3 69 4-77 21-102 (103)
203 cd02984 TRX_PICOT TRX domain, 36.1 99 0.0021 19.0 4.4 52 4-59 18-73 (97)
204 PF07511 DUF1525: Protein of u 35.7 54 0.0012 21.9 3.0 26 52-77 81-107 (114)
205 cd02972 DsbA_family DsbA famil 34.6 48 0.001 20.1 2.7 22 4-25 1-22 (98)
206 cd03024 DsbA_FrnE DsbA family, 34.3 45 0.00097 24.1 2.8 33 4-36 1-41 (201)
207 TIGR01764 excise DNA binding d 33.4 76 0.0017 16.5 3.4 26 51-76 23-48 (49)
208 PF13098 Thioredoxin_2: Thiore 33.3 46 0.00099 21.3 2.5 34 4-37 9-49 (112)
209 PF09413 DUF2007: Domain of un 33.2 43 0.00093 19.4 2.1 32 5-36 2-33 (67)
210 cd03022 DsbA_HCCA_Iso DsbA fam 31.2 70 0.0015 22.8 3.4 32 4-35 1-36 (192)
211 TIGR02187 GlrX_arch Glutaredox 30.1 1.8E+02 0.0039 21.5 5.5 53 4-60 23-83 (215)
212 COG0703 AroK Shikimate kinase 29.3 84 0.0018 22.7 3.4 31 2-32 3-33 (172)
213 PF01552 Pico_P2B: Picornaviru 29.3 41 0.00089 21.8 1.6 26 6-31 71-96 (99)
214 PF03421 YopJ: YopJ Serine/Thr 29.0 1.6E+02 0.0034 21.3 4.8 60 138-198 2-62 (177)
215 PF03514 GRAS: GRAS domain fam 29.0 3.3E+02 0.0071 22.4 11.7 157 15-200 162-321 (374)
216 PF07862 Nif11: Nitrogen fixat 28.8 80 0.0017 17.1 2.6 23 189-211 4-26 (49)
217 COG3150 Predicted esterase [Ge 28.5 61 0.0013 23.5 2.5 31 5-35 4-34 (191)
218 COG2975 Uncharacterized protei 28.3 99 0.0022 17.8 2.8 33 65-101 3-35 (64)
219 PF00004 AAA: ATPase family as 26.8 1.2E+02 0.0026 19.7 3.8 30 4-33 1-30 (132)
220 PTZ00051 thioredoxin; Provisio 26.5 1.6E+02 0.0035 18.1 5.2 53 4-60 22-77 (98)
221 PRK06217 hypothetical protein; 26.2 89 0.0019 22.4 3.2 29 1-29 1-29 (183)
222 TIGR03412 iscX_yfhJ FeS assemb 26.1 1.4E+02 0.003 17.6 3.2 33 65-101 2-34 (63)
223 PHA00510 transcriptional regul 26.0 73 0.0016 20.7 2.3 44 154-197 80-123 (125)
224 COG2256 MGS1 ATPase related to 25.9 1.1E+02 0.0023 25.6 3.7 35 1-35 48-82 (436)
225 PF05496 RuvB_N: Holliday junc 25.8 1.2E+02 0.0026 23.1 3.8 32 2-33 51-82 (233)
226 COG2761 FrnE Predicted dithiol 25.7 46 0.00099 25.2 1.6 20 3-22 7-26 (225)
227 cd02978 KaiB_like KaiB-like fa 25.3 1.5E+02 0.0032 18.0 3.4 52 4-59 4-60 (72)
228 PF01323 DSBA: DSBA-like thior 25.1 78 0.0017 22.6 2.7 35 3-37 1-40 (193)
229 TIGR03757 conj_TIGR03757 integ 24.6 94 0.002 20.7 2.7 27 51-77 81-108 (113)
230 cd01766 Ufm1 Urm1-like ubiquit 24.3 1.1E+02 0.0023 18.6 2.6 43 4-53 17-60 (82)
231 PRK00625 shikimate kinase; Pro 24.0 1E+02 0.0023 22.0 3.1 28 4-31 3-30 (173)
232 cd02963 TRX_DnaJ TRX domain, D 23.9 2.1E+02 0.0045 18.4 5.4 52 4-59 28-84 (111)
233 cd02997 PDI_a_PDIR PDIa family 23.4 1.3E+02 0.0027 18.7 3.2 55 4-60 21-81 (104)
234 PRK14528 adenylate kinase; Pro 22.8 1.2E+02 0.0026 21.9 3.3 30 1-30 1-30 (186)
235 PRK03731 aroL shikimate kinase 22.4 1.2E+02 0.0027 21.2 3.3 30 2-31 3-32 (171)
236 cd02959 ERp19 Endoplasmic reti 22.2 2.4E+02 0.0052 18.5 5.9 53 4-60 23-82 (117)
237 PF12062 HSNSD: heparan sulfat 22.2 2.3E+02 0.005 24.1 5.0 50 5-69 64-118 (487)
238 PF13462 Thioredoxin_4: Thiore 21.8 1E+02 0.0022 21.1 2.8 20 3-22 15-34 (162)
239 TIGR01126 pdi_dom protein disu 21.7 1.3E+02 0.0029 18.4 3.1 52 4-59 17-74 (102)
240 PF07728 AAA_5: AAA domain (dy 21.6 1.9E+02 0.0042 19.3 4.0 34 4-37 2-35 (139)
241 PF00392 GntR: Bacterial regul 21.3 1E+02 0.0022 17.6 2.2 27 142-168 4-31 (64)
242 PF12728 HTH_17: Helix-turn-he 21.2 1.5E+02 0.0033 15.8 3.7 28 51-78 23-50 (51)
243 cd00449 PLPDE_IV PyridoxaL 5'- 20.8 82 0.0018 23.9 2.2 58 21-78 196-255 (256)
244 COG1102 Cmk Cytidylate kinase 20.6 1.2E+02 0.0027 21.9 2.8 28 4-31 3-30 (179)
245 PF05464 Phi-29_GP4: Phi-29-li 20.6 88 0.0019 20.3 1.9 45 154-198 80-124 (125)
246 PRK06092 4-amino-4-deoxychoris 20.6 1.1E+02 0.0024 23.5 2.9 58 21-79 208-265 (268)
247 cd02955 SSP411 TRX domain, SSP 20.5 2.8E+02 0.0061 18.6 6.0 64 5-68 20-97 (124)
248 PF11823 DUF3343: Protein of u 20.4 2E+02 0.0044 17.0 3.5 31 5-35 4-34 (73)
249 cd03023 DsbA_Com1_like DsbA fa 20.3 1.1E+02 0.0023 20.7 2.5 21 3-23 8-28 (154)
No 1
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=3.2e-41 Score=252.07 Aligned_cols=209 Identities=41% Similarity=0.679 Sum_probs=174.8
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCC
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~ 80 (213)
|. |+||+++.||+++||+++|.++|++|+.+.++..++++..++++++||.|+||+|+++|.+|+||.+|++||++.++
T Consensus 1 ~~-~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 1 MV-VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYA 79 (214)
T ss_pred Cc-eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcC
Confidence 53 89999999999999999999999999999999887778889999999999999999999999999999999999998
Q ss_pred CCCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecC
Q 046920 81 DKGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLAC 159 (213)
Q Consensus 81 ~~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 159 (213)
+.+..++|.+ .+++++++|+.+..+.+............+....+.+.+....+.....+.+.++.||+.|++++|++|
T Consensus 80 ~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 159 (214)
T PLN02473 80 DQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGG 159 (214)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccC
Confidence 5434689988 999999999998887766544333333333322233444556677778899999999999998899999
Q ss_pred CCchHhHhhhhhHHHHHhcCCCc-cccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 160 DSFTLVDLHHLPNINLLLGTPVK-KLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 160 ~~~t~aDi~l~~~l~~~~~~~~~-~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
|++|+||+++++.+.++...... ...+.+|+|.+|++++.++|+|++++..
T Consensus 160 d~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 160 DEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 99999999999999876543221 2357899999999999999999999865
No 2
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.7e-39 Score=242.90 Aligned_cols=210 Identities=45% Similarity=0.768 Sum_probs=171.5
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCC
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~ 80 (213)
|+ ++||+... ++++|++++|.++|++|+.+.++...++...+++++.||.|+||+|+++|.+|+||.+|++||+++++
T Consensus 1 ~~-~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 1 MV-LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred Ce-EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcC
Confidence 76 89999765 46899999999999999999999877667788999999999999999999999999999999999998
Q ss_pred CCCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecC
Q 046920 81 DKGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLAC 159 (213)
Q Consensus 81 ~~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 159 (213)
..++.++|.+ .+++++++|+.+....+.+...............+...++...+...+.+.+.++.||+.|++++|++|
T Consensus 79 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 158 (215)
T PLN02395 79 SQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAG 158 (215)
T ss_pred CCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 5444699988 999999999998877766554443332222222122334455667788899999999999998899999
Q ss_pred CCchHhHhhhhhHHHHHhcC-CCccccCCCccHHHHHHHHhcChhHHHHHhhhc
Q 046920 160 DSFTLVDLHHLPNINLLLGT-PVKKLFDARPHVSAWAADITSRPAWAKVLALLK 212 (213)
Q Consensus 160 ~~~t~aDi~l~~~l~~~~~~-~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (213)
+++|+||+++++.+.+.... +.....+.+|+|.+|++++.++|+|+++++..+
T Consensus 159 ~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~~ 212 (215)
T PLN02395 159 DFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKYS 212 (215)
T ss_pred CCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHhc
Confidence 99999999999988876432 212246789999999999999999999988653
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=6.6e-40 Score=244.21 Aligned_cols=193 Identities=17% Similarity=0.229 Sum_probs=160.8
Q ss_pred cceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCC
Q 046920 2 AGIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD 81 (213)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~ 81 (213)
++|+||+++.||+|++|+++|+++|++|+.+.+++. +..++|+++||.|+||+|+++|.+|+||.+|++||++++++
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCC
Confidence 358999999999999999999999999999999875 45689999999999999999999999999999999999984
Q ss_pred CCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCC
Q 046920 82 KGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACD 160 (213)
Q Consensus 82 ~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 160 (213)
+.++|.+ .+++++++|+.+....+....... . ...+...+...+.+.+.+..+|++|++++|++|+
T Consensus 86 --~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~ 152 (211)
T PRK09481 86 --PPLMPVYPVARGESRLMMHRIEKDWYSLMNKI-----V------NGSASEADAARKQLREELLAIAPVFGEKPYFMSE 152 (211)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----h------cCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCC
Confidence 4799988 999999999987655432221111 0 1123345667788999999999999999999999
Q ss_pred CchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 161 SFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 161 ~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
++|+||+++++.+.+....+.......+|+|++|++++.+||+|++++..
T Consensus 153 ~~t~AD~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~ 202 (211)
T PRK09481 153 EFSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSFLASLTE 202 (211)
T ss_pred CccHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHhccHHHHHHcCH
Confidence 99999999999998876554321225799999999999999999998765
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=3.9e-38 Score=235.18 Aligned_cols=202 Identities=23% Similarity=0.276 Sum_probs=162.6
Q ss_pred cceEEeccC--CChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhC
Q 046920 2 AGIKVHGSV--FSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEF 79 (213)
Q Consensus 2 ~~~~Ly~~~--~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~ 79 (213)
|+++||+.+ .||+|+||+++|.++||+|+.+.+++.+++...++|+++||.|+||+|+++|.+|+||.+|++||++++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 478999975 699999999999999999999999998777778999999999999999999999999999999999999
Q ss_pred CCCC-CCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC-Cce
Q 046920 80 PDKG-TQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ-SKY 156 (213)
Q Consensus 80 ~~~~-~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~ 156 (213)
++.. +.++|.+ .+++++++|+.+....+............. .....+...+...+.+.+.+..+|++|++ ++|
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVF----AGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhc----cCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 8431 1399988 999999999998876554322111111111 11122223455667789999999999975 579
Q ss_pred ecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhhhc
Q 046920 157 LACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 212 (213)
Q Consensus 157 l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (213)
++|+ +|+|||++++.+.++...+.. . .|+|.+|++++.+||+|+++++..+
T Consensus 160 l~G~-~TlADi~l~~~l~~~~~~~~~--~--~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 160 LFGE-WCIADTDLALMLNRLVLHGDE--V--PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred eeCC-ccHHHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 9996 999999999999887654331 2 3999999999999999999998865
No 5
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=8e-38 Score=233.76 Aligned_cols=197 Identities=24% Similarity=0.381 Sum_probs=159.4
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEe-----CC--EEeeehHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH-----GD--QKLFESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~-----~~--~~i~eS~~I~~yL 75 (213)
|++||+.+ |++|++|+++|+++|++|+.+.+++..++...++|+++||.|+||+|++ +| .+|+||.+|++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 47999877 7999999999999999999999998877777889999999999999997 34 4899999999999
Q ss_pred HhhCCCCCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCC
Q 046920 76 AQEFPDKGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQS 154 (213)
Q Consensus 76 ~~~~~~~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 154 (213)
++.++ .+.|.+ .+++++++|+.|....+.+.+..... ... .....++...+.....+.+.+..||++|+++
T Consensus 80 ~~~~~----~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 151 (215)
T PRK13972 80 AEKTG----LFLSHETRERAATLQWLFWQVGGLGPMLGQNHH---FNH-AAPQTIPYAIERYQVETQRLYHVLNKRLENS 151 (215)
T ss_pred HHhcC----CCCCCCHHHHHHHHHHHHHHhhccCcceeeeee---eec-cCCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 99986 367777 89999999999887766654322110 000 0112234455666778999999999999989
Q ss_pred ceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 155 KYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 155 ~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
+|++||++|+|||++++.+........ ..+.+|+|.+|++++.+||+|++++..
T Consensus 152 ~~l~Gd~~t~ADi~l~~~~~~~~~~~~--~~~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 152 PWLGGENYSIADIACWPWVNAWTRQRI--DLAMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhcCC--cchhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999988755443322 357899999999999999999988765
No 6
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=1.7e-36 Score=224.53 Aligned_cols=194 Identities=24% Similarity=0.321 Sum_probs=157.9
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCC-CCchhhhhcCCCCCCCeEEe-CCEEeeehHHHHHHHHhhCCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGE-HKKEAFLSLNPFGQVPVLEH-GDQKLFESRAITQYIAQEFPD 81 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~g~vP~l~~-~~~~i~eS~~I~~yL~~~~~~ 81 (213)
|+||+...| ++++++++|+++||+|+.+.+++.+++ ...++|.++||.|+||+|++ +|.+|+||.+|++||++++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589998865 799999999999999999999987553 34578999999999999985 569999999999999999984
Q ss_pred CCCCCC-CCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecC
Q 046920 82 KGTQLT-CPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLAC 159 (213)
Q Consensus 82 ~~~~l~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 159 (213)
+.++ |.+ .+++++++|+.+....+.+.+.... .....+...+.....+.+.++.+|+.|++++||+|
T Consensus 80 --~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 148 (201)
T PRK10542 80 --RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLF---------RPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICG 148 (201)
T ss_pred --cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhcc---------CCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeC
Confidence 3555 556 8899999999987665554332221 11122333455677899999999999998999999
Q ss_pred CCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhhh
Q 046920 160 DSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALL 211 (213)
Q Consensus 160 ~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (213)
+++|+||+++++.+.+....+. ....+|+|.+|++++.++|+|+++++..
T Consensus 149 ~~~s~ADi~l~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 149 QRFTIADAYLFTVLRWAYAVKL--NLEGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred CCCcHHhHHHHHHHHHhhccCC--CcccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 9999999999999988865543 2578999999999999999999998753
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-36 Score=223.50 Aligned_cols=194 Identities=34% Similarity=0.462 Sum_probs=167.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCE-EeeehHHHHHHHHhhCCCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQ-KLFESRAITQYIAQEFPDK 82 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~-~i~eS~~I~~yL~~~~~~~ 82 (213)
++||+.+.||+|+||++++.++|++|+.+.++... +...++|.++||.|+||+|+++|. +|+||.+|++||++++++.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999999987 677899999999999999999985 9999999999999999953
Q ss_pred CCCCCCCC-C---chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceec
Q 046920 83 GTQLTCPG-K---PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLA 158 (213)
Q Consensus 83 ~~~l~p~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 158 (213)
.++|.+ . +++.+..|+.+....+.+......... ...... ......+.....+...+..+|..|++++|++
T Consensus 80 --~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 154 (211)
T COG0625 80 --PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LGSEPE--LLEAALEAARAEIRALLALLEALLADGPYLA 154 (211)
T ss_pred --CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-cccccc--ccHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 499987 4 788888999999887777776665443 222111 1566778888999999999999999999999
Q ss_pred CCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHH
Q 046920 159 CDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWA 205 (213)
Q Consensus 159 G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~ 205 (213)
|+++|+||+++++.+.++...+.. .+.+|+|.+|++++.++|+++
T Consensus 155 G~~~tiAD~~~~~~~~~~~~~~~~--~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 155 GDRFTIADIALAPLLWRLALLGEE--LADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhhcCcc--cccChHHHHHHHHHHcCCchh
Confidence 999999999999999996666543 378999999999999999954
No 8
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-36 Score=219.94 Aligned_cols=194 Identities=25% Similarity=0.317 Sum_probs=165.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcC-CCCCCCeEEeCCEEeeehHHHHHHHHhhCCCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLN-PFGQVPVLEHGDQKLFESRAITQYIAQEFPDK 82 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~ 82 (213)
++||++..|||++|++++|+++||+|+.+.+++. ++.+++++.| +.++||+|+++|..|+||..|++||++.+++
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~- 85 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPS- 85 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccC-
Confidence 8999999999999999999999999999999997 4788999999 5799999999999999999999999999996
Q ss_pred CCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhcc-CCceecCC
Q 046920 83 GTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLS-QSKYLACD 160 (213)
Q Consensus 83 ~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~ 160 (213)
+++++|+| -+|++++-|++++...+......+.. ....+..+...+.+...++.||+.|+ +++|++|+
T Consensus 86 ~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~----------~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~ 155 (231)
T KOG0406|consen 86 GPPILPSDPYERAQARFWAEYIDKKVFFVGRFVVA----------AKGGEEQEAAKEELREALKVLEEELGKGKDFFGGE 155 (231)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHh----------hcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 57999999 99999999999998765444333221 12334556678889999999999999 78999999
Q ss_pred CchHhHhhhhhHHHHHhcCCC------ccccCCCccHHHHHHHHhcChhHHHHHhhh
Q 046920 161 SFTLVDLHHLPNINLLLGTPV------KKLFDARPHVSAWAADITSRPAWAKVLALL 211 (213)
Q Consensus 161 ~~t~aDi~l~~~l~~~~~~~~------~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (213)
++|++||++++.+.++..... ....+.+|+|.+|.++|.++|++++++.+.
T Consensus 156 ~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~ 212 (231)
T KOG0406|consen 156 TIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDS 212 (231)
T ss_pred CcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCH
Confidence 999999999977666655411 124578999999999999999999987543
No 9
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-36 Score=207.39 Aligned_cols=197 Identities=20% Similarity=0.230 Sum_probs=168.9
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCC-CCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAG-EHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD 81 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~ 81 (213)
+.+||++-.|.|++|||++|+++||+|+.+.|++.++ ++.+.+|.+.||+++||+|+++|.+|.||.||++||++.+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P- 83 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYP- 83 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCC-
Confidence 6789999999999999999999999999999998776 46677999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC--Cceec
Q 046920 82 KGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ--SKYLA 158 (213)
Q Consensus 82 ~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 158 (213)
++.|+|++ ..|+.+++....+.+.+.+.....+.....+. ....-..-....+.+.|.+||.+|.. ++|.+
T Consensus 84 -~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek-----~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycv 157 (217)
T KOG0868|consen 84 -DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEK-----EPGYGDQWAQHFITKGFTALEKLLKSHAGKYCV 157 (217)
T ss_pred -CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhccc-----ccchhhHHHHHHHHHhHHHHHHHHHHccCCccc
Confidence 56999999 99999999999888888877665555433222 22111344556788999999999976 79999
Q ss_pred CCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHH
Q 046920 159 CDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 208 (213)
Q Consensus 159 G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (213)
||++|+||+++.+.+........ ++..||-+.+..+.+.+.|+|+...
T Consensus 158 GDevtiADl~L~pqv~nA~rf~v--dl~PYPti~ri~e~l~elpaFq~ah 205 (217)
T KOG0868|consen 158 GDEVTIADLCLPPQVYNANRFHV--DLTPYPTITRINEELAELPAFQAAH 205 (217)
T ss_pred Cceeehhhhccchhhhhhhhccc--cCCcCchHHHHHHHHHhCHHHHhcC
Confidence 99999999999999998854433 5899999999999999999999764
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=8.8e-36 Score=222.07 Aligned_cols=200 Identities=26% Similarity=0.322 Sum_probs=158.7
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEeccCCC-CCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCCC
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVDMKA-GEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDKG 83 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~~ 83 (213)
+||++..||+++++|++|.++||+|+.+.++... ++...+++.++||.|+||+|+++|.+|+||.+|++||++++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~-- 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPD-- 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCC--
Confidence 5899999999999999999999999999998632 3445678999999999999999889999999999999999984
Q ss_pred CCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC--CceecCC
Q 046920 84 TQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ--SKYLACD 160 (213)
Q Consensus 84 ~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 160 (213)
+.++|.+ .+++++++|+.+....+.+......... +....+ ..+....+...+.+.+.++.||++|++ ++||+|+
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 156 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQY-LREKLG-VEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGD 156 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHH-HHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCC
Confidence 3699988 9999999999988765544322111111 111101 112223344556789999999999986 4699999
Q ss_pred CchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 161 SFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 161 ~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
++|+|||.+++.+.+...... ..+.||+|++|+++|.+||+|+++...
T Consensus 157 ~~T~ADi~~~~~l~~~~~~~~--~~~~~p~l~~~~~~~~~rp~~~~~~~~ 204 (210)
T TIGR01262 157 TPTLADLCLVPQVYNAERFGV--DLTPYPTLRRIAAALAALPAFQRAHPE 204 (210)
T ss_pred CCCHHHHHHHHHHHHHHHcCC--CcccchHHHHHHHHHhcCHHHHHhCcc
Confidence 999999999999988764432 357899999999999999999998754
No 11
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=3.3e-35 Score=225.21 Aligned_cols=200 Identities=22% Similarity=0.272 Sum_probs=158.4
Q ss_pred ceEEeccCCChhHHHHHHHHHhc------CCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC----EEeeehHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEK------ELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD----QKLFESRAIT 72 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~------gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~----~~i~eS~~I~ 72 (213)
+|+||+.+ ||+|+||+++|+++ |++|+.+.+++..+++..++|.++||.|+||+|++++ .+|+||.+|+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 58999976 99999999999997 8999999999877767788999999999999999863 7999999999
Q ss_pred HHHHhhCCCCCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 046920 73 QYIAQEFPDKGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARL 151 (213)
Q Consensus 73 ~yL~~~~~~~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 151 (213)
+||++.++ .++|.+ .+++++++|+.+....+ ......+.. .... .....+...+....++.+.++.||++|
T Consensus 123 ~YL~~~~~----~L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~L~~le~~L 194 (264)
T PRK11752 123 LYLAEKFG----AFLPKDLAARTETLNWLFWQQGSA-PFLGGGFGH-FYAY--APEKIEYAINRFTMEAKRQLDVLDKQL 194 (264)
T ss_pred HHHHHhcC----CcCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHH-HHHh--CCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 389988 99999999999875542 111111100 1110 112223345566778899999999999
Q ss_pred cCCceecCCCchHhHhhhhhHHHHHhcC---C--CccccCCCccHHHHHHHHhcChhHHHHHhhh
Q 046920 152 SQSKYLACDSFTLVDLHHLPNINLLLGT---P--VKKLFDARPHVSAWAADITSRPAWAKVLALL 211 (213)
Q Consensus 152 ~~~~~l~G~~~t~aDi~l~~~l~~~~~~---~--~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (213)
++++||+|+++|+|||++++.+.++... . .....+.+|+|++|++++.+||+|+++....
T Consensus 195 ~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 195 AEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred ccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 9889999999999999999988766432 1 1113578999999999999999999987654
No 12
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-35 Score=220.42 Aligned_cols=202 Identities=36% Similarity=0.511 Sum_probs=178.8
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDKG 83 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~~ 83 (213)
++||++..|+.|+++.+++.++|++|+.+.++...+++..++|+++||.|+||+|+++|..++||.||++||.+++. ..
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~-~~ 81 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYG-PL 81 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcC-CC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998 54
Q ss_pred C-CCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhcc-CCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCC
Q 046920 84 T-QLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKP-MFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACD 160 (213)
Q Consensus 84 ~-~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 160 (213)
. .++|.+ .+++.+++|+.+..+.+.+... ...++.+ ..+...+....++....+.+.++.+|..|.++.|+.|+
T Consensus 82 ~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~ 158 (226)
T KOG0867|consen 82 GGILLPKDLKERAIVDQWLEFENGVLDPVTF---ERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGD 158 (226)
T ss_pred CcccCCcCHHHHHHHHHHHHhhhcccccccc---cceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCC
Confidence 4 499999 9999999999999988887753 2223333 44455677788899999999999999999999999999
Q ss_pred CchHhHhhhhhHHHHHh--cCCCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 161 SFTLVDLHHLPNINLLL--GTPVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 161 ~~t~aDi~l~~~l~~~~--~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
++|+||+.+.+.+..+. .. ......++|++.+|++++.++|++++....
T Consensus 159 ~~tlADl~~~~~~~~~~~~~~-~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~ 209 (226)
T KOG0867|consen 159 QLTLADLSLASTLSQFQGKFA-TEKDFEKYPKVARWYERIQKRPAYEEANEK 209 (226)
T ss_pred cccHHHHHHhhHHHHHhHhhh-hhhhhhhChHHHHHHHHHHhCccHHHHHHH
Confidence 99999999999999983 33 233678999999999999999999987653
No 13
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=9.7e-35 Score=215.19 Aligned_cols=195 Identities=19% Similarity=0.205 Sum_probs=155.0
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEe-CCEEeeehHHHHHHHHhhCCCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH-GDQKLFESRAITQYIAQEFPDK 82 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~-~~~~i~eS~~I~~yL~~~~~~~ 82 (213)
++||++..||++++|+++|+++|++|+.+.++... ..+++.+.||.|+||+|++ +|.+|+||.+|++||++.+++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~- 76 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVA- 76 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCC-
Confidence 58999999999999999999999999999888653 2356777899999999985 569999999999999999873
Q ss_pred CCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCC
Q 046920 83 GTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDS 161 (213)
Q Consensus 83 ~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 161 (213)
+.++|.+ .+++++++|+.+....+..... ....... ......++..+.....+.+.++.||++|++++ ++||+
T Consensus 77 -~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~ 150 (202)
T PRK10357 77 -PAMLPRDPLAALRVRQLEALADGIMDAALV-SVREQAR---PAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDT 150 (202)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC---ccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCC
Confidence 4699988 8899999998876554433222 1211111 11233445556777889999999999998878 99999
Q ss_pred chHhHhhhhhHHHHHhcCCC-ccccCCCccHHHHHHHHhcChhHHHHH
Q 046920 162 FTLVDLHHLPNINLLLGTPV-KKLFDARPHVSAWAADITSRPAWAKVL 208 (213)
Q Consensus 162 ~t~aDi~l~~~l~~~~~~~~-~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (213)
+|+||+++++.+.++..... ..+...+|+|.+|++++.+||+|+++.
T Consensus 151 ~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~ 198 (202)
T PRK10357 151 VNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTE 198 (202)
T ss_pred cCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcC
Confidence 99999999999987755322 123577999999999999999999864
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=204.06 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=139.5
Q ss_pred Cc-ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCC--Cchhhh--hcCCCCCCCeEEeCCEEeeehHHHHHHH
Q 046920 1 MA-GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEH--KKEAFL--SLNPFGQVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 1 M~-~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~--~~~~~~--~~~p~g~vP~l~~~~~~i~eS~~I~~yL 75 (213)
|+ +++||+++.++++++||++|+++|++|+.+.++... +. ..+++. ..||+|+||+|+++|.+|+||.||++||
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 55 689999999999999999999999999998764311 00 001112 4799999999999999999999999999
Q ss_pred HhhCCCCCCCCCCCCCchhhHHhHHHHHhh-hcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCC
Q 046920 76 AQEFPDKGTQLTCPGKPIAPLLVWKEVEAL-QFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQS 154 (213)
Q Consensus 76 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 154 (213)
+++++ +.+.+ +.+++..|+.+... .+...... .... .+...+...+.+.+.+..||+.|+++
T Consensus 80 a~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~ 142 (205)
T PTZ00057 80 SKKYK-----ICGES-ELNEFYADMIFCGVQDIHYKFNN---TNLF--------KQNETTFLNEELPKWSGYFENILKKN 142 (205)
T ss_pred HHHcC-----CCCCC-HHHHHHHHHHHHHHHHHHHHHhh---hHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99997 33443 23333333332221 11110000 0000 11122445677899999999999753
Q ss_pred --ceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhhhc
Q 046920 155 --KYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 212 (213)
Q Consensus 155 --~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (213)
+|++||++|+||+++++.+.++.... ...++.+|+|.+|++++.++|+|++++++.+
T Consensus 143 ~~~~l~Gd~~T~AD~~l~~~~~~~~~~~-~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 143 HCNYFVGDNLTYADLAVFNLYDDIETKY-PNSLKNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred CCCeeeCCcccHHHHHHHHHHHHHHHhC-hhhhccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 79999999999999999988765322 2246899999999999999999999998875
No 15
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=1.2e-31 Score=200.44 Aligned_cols=179 Identities=20% Similarity=0.255 Sum_probs=136.2
Q ss_pred CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCC-CCCCCC
Q 046920 10 VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDK-GTQLTC 88 (213)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~-~~~l~p 88 (213)
+.||+|+||+++|.++|++|+.+.+++. ...++|+++||.|+||+|+++|.+|+||.+|++||+++++.. .+.+.|
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~---~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLK---RKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCC---CCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 5699999999999999999999999987 346899999999999999999999999999999999999742 123444
Q ss_pred CC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhcc---------------
Q 046920 89 PG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLS--------------- 152 (213)
Q Consensus 89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--------------- 152 (213)
.+ ..++... + +...+..+ +.. ..+...+...+.+.+.+..||++|.
T Consensus 94 ~~~~~~~~~~---~-----l~~~~~~~-----~~~-----~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~ 155 (236)
T TIGR00862 94 KHPESNTAGL---D-----IFAKFSAY-----IKN-----SNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDE 155 (236)
T ss_pred CCHHHHHHHH---H-----HHHHHHHH-----HHc-----CCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 33 2222111 0 11111111 111 1222334455668899999999986
Q ss_pred ---CCceecCCCchHhHhhhhhHHHHHhcC----CCccccCCCccHHHHHHHHhcChhHHHHHh
Q 046920 153 ---QSKYLACDSFTLVDLHHLPNINLLLGT----PVKKLFDARPHVSAWAADITSRPAWAKVLA 209 (213)
Q Consensus 153 ---~~~~l~G~~~t~aDi~l~~~l~~~~~~----~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~ 209 (213)
+++||.|+++|+|||++++.+.++... ......+.+|+|.+|++++.++|+|+++..
T Consensus 156 ~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p 219 (236)
T TIGR00862 156 KVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCP 219 (236)
T ss_pred cccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCC
Confidence 579999999999999999999998853 122236889999999999999999999754
No 16
>PRK10387 glutaredoxin 2; Provisional
Probab=100.00 E-value=4.6e-32 Score=202.05 Aligned_cols=189 Identities=13% Similarity=0.058 Sum_probs=139.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEE-eCCEEeeehHHHHHHHHhhCCCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLE-HGDQKLFESRAITQYIAQEFPDK 82 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~-~~~~~i~eS~~I~~yL~~~~~~~ 82 (213)
|+||++..||+|+||+++|+++|++|+.+.++... . ......||.|+||+|+ ++|.+|+||.+|++||+++++++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~--~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--E--ATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--h--hhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999998876432 1 1225689999999995 67799999999999999999843
Q ss_pred CCCCCCCCCchhhHHhHHHHHhhhcCcchhhhhhhhhhcc--------------CCCCCCCh---HHHHHHHHHHHHHHH
Q 046920 83 GTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKP--------------MFGMTTDP---AAVEENEAKLAKILD 145 (213)
Q Consensus 83 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~~l~ 145 (213)
.+ +. .+++.+++|+.+....+...+...+....... .......+ ...+...+.+.+.+.
T Consensus 77 --~l-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (210)
T PRK10387 77 --LL-TG-KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLR 152 (210)
T ss_pred --cC-CC-cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHH
Confidence 34 32 35778899998776544433222111000000 00000000 011345678899999
Q ss_pred HHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhH
Q 046920 146 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAW 204 (213)
Q Consensus 146 ~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (213)
.+|++|++ +|++||++|+||+++++.+.++...+. .+.+|+|.+|++|+.+||++
T Consensus 153 ~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~---~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 153 ALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVKG---IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeecC---CCCCHHHHHHHHHHHHHhCC
Confidence 99999987 999999999999999999999876533 23469999999999999875
No 17
>PLN02378 glutathione S-transferase DHAR1
Probab=99.98 E-value=1e-31 Score=200.21 Aligned_cols=176 Identities=23% Similarity=0.302 Sum_probs=133.8
Q ss_pred cCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCCCCCCCC
Q 046920 9 SVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDKGTQLTC 88 (213)
Q Consensus 9 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~~~~l~p 88 (213)
+..||||+||+++|+++|++|+.+.+++. ...++|+++||.|+||+|+++|.+|+||.+|++||+++++.. .+.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~--~l~- 90 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLS---DKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDP--PLK- 90 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcc---cCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCC--CCC-
Confidence 35599999999999999999999999986 346789999999999999999999999999999999999842 342
Q ss_pred CC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhcc--CCceecCCCchHh
Q 046920 89 PG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLS--QSKYLACDSFTLV 165 (213)
Q Consensus 89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~a 165 (213)
+ .+++.+++.+.. .+... ... .. . .+.....+.+.+..+|+.|+ +++|++||++|+|
T Consensus 91 -~~~~~a~i~~~~~~-------~~~~~-----~~~---~~-~---~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~A 150 (213)
T PLN02378 91 -TPAEFASVGSNIFG-------TFGTF-----LKS---KD-S---NDGSEHALLVELEALENHLKSHDGPFIAGERVSAV 150 (213)
T ss_pred -CHHHHHHHHHHHHH-------HHHHH-----Hhc---CC-h---hhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchh
Confidence 3 555555543321 11111 000 00 0 12234567788999999997 4789999999999
Q ss_pred HhhhhhHHHHHhcC----CCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 166 DLHHLPNINLLLGT----PVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 166 Di~l~~~l~~~~~~----~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
|+++++.+.++... ......+.+|+|++|++++.+||+|++++..
T Consensus 151 Di~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~ 199 (213)
T PLN02378 151 DLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTE 199 (213)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCC
Confidence 99999998775432 1112347899999999999999999987654
No 18
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=8.1e-31 Score=199.99 Aligned_cols=176 Identities=24% Similarity=0.315 Sum_probs=135.6
Q ss_pred cCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCCCCCCCC
Q 046920 9 SVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDKGTQLTC 88 (213)
Q Consensus 9 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~~~~l~p 88 (213)
...||+|+|++++|+++|++|+.+.+++. ...++|+++||.|+||+|+++|.+|.||.+|++||+++++. +.+.+
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~--~~L~~ 144 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPD--PPLAT 144 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCC--CCCCC
Confidence 44599999999999999999999999886 45788999999999999999999999999999999999984 34432
Q ss_pred CCCchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC-CceecCCCchHhHh
Q 046920 89 PGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ-SKYLACDSFTLVDL 167 (213)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aDi 167 (213)
. .+++.+++++... +.. .+.. .... +...+.+.+.+..||++|++ ++|++|+++|+|||
T Consensus 145 ~-~era~i~~~l~~~-------~~~-----~~~~---~~~~----~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi 204 (265)
T PLN02817 145 P-PEKASVGSKIFST-------FIG-----FLKS---KDPG----DGTEQALLDELTSFDDYIKENGPFINGEKISAADL 204 (265)
T ss_pred H-HHHHHHHHHHHHH-------HHH-----Hhcc---CCcc----hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHH
Confidence 2 6677777654211 000 0110 1111 12235677889999999974 79999999999999
Q ss_pred hhhhHHHHHhcC-C---CccccCCCccHHHHHHHHhcChhHHHHHh
Q 046920 168 HHLPNINLLLGT-P---VKKLFDARPHVSAWAADITSRPAWAKVLA 209 (213)
Q Consensus 168 ~l~~~l~~~~~~-~---~~~~~~~~p~L~~~~~~~~~~p~~~~~~~ 209 (213)
++++.+.++... + .....+.+|+|.+|++++.++|+|+++..
T Consensus 205 ~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~ 250 (265)
T PLN02817 205 SLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRA 250 (265)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCC
Confidence 999998776532 1 11124789999999999999999998765
No 19
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=188.12 Aligned_cols=199 Identities=21% Similarity=0.167 Sum_probs=161.9
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCC
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~ 80 (213)
|+.++|++++..+.+.-+|+++++.|++|+.+.+...++ -+..+...|+|++|+|..+|..|.+|.||+|||+++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC
Confidence 888999999999999999999999999999999988751 12333448999999999999999999999999999999
Q ss_pred CCCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHH-HHHHHHHHHHHHHHhhccC--Cce
Q 046920 81 DKGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVE-ENEAKLAKILDVYEARLSQ--SKY 156 (213)
Q Consensus 81 ~~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~--~~~ 156 (213)
+.+++ .+.++++.+.+...+............. .....+...+ .......+.+..+++.|.. ++|
T Consensus 78 -----l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~------~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgf 146 (206)
T KOG1695|consen 78 -----LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAP------EAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGF 146 (206)
T ss_pred -----cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhh------hhccchhhhhhhhccchHHHHHHHHHHHHhCCCCe
Confidence 99999 9999999998877765444332222110 1112222222 5667788899999999983 679
Q ss_pred ecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhhhcC
Q 046920 157 LACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLKH 213 (213)
Q Consensus 157 l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (213)
|+||++|+||+.++..+..+...........+|+|+++.+++.++|.++++++.++.
T Consensus 147 lvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~ 203 (206)
T KOG1695|consen 147 LVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYLESRPV 203 (206)
T ss_pred eecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHHhcCCC
Confidence 999999999999999999999853333567889999999999999999999998763
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.97 E-value=1e-29 Score=188.93 Aligned_cols=187 Identities=12% Similarity=0.023 Sum_probs=133.3
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEE-eCCEEeeehHHHHHHHHhhCCCCC
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLE-HGDQKLFESRAITQYIAQEFPDKG 83 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~-~~~~~i~eS~~I~~yL~~~~~~~~ 83 (213)
+||++..||+|+|||++|.++|++|+.+.++... .....+.||.|+||+|+ ++|.+|+||.+|++||+++++.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~----~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~-- 74 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD----EETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGE-- 74 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc----chhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCC--
Confidence 5899999999999999999999999988764431 12346889999999998 6779999999999999999984
Q ss_pred CCCCCCCCchhhHHhHHHHHhhhcCcchhhhhhh----h---------hhccC-CCCCCCh---HHHHHHHHHHHHHHHH
Q 046920 84 TQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWE----L---------VYKPM-FGMTTDP---AAVEENEAKLAKILDV 146 (213)
Q Consensus 84 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~ 146 (213)
+ +++. ..++++.+|+.+....+...+...+.. . ..+.. .+..... ...+.....+.+.++.
T Consensus 75 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 152 (209)
T TIGR02182 75 P-LLTG-KVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEE 152 (209)
T ss_pred c-cCCC-CChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHH
Confidence 2 3332 346778888876555443222111100 0 00000 0000000 0013456778999999
Q ss_pred HHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCc-cHHHHHHHHhcChhH
Q 046920 147 YEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARP-HVSAWAADITSRPAW 204 (213)
Q Consensus 147 le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p-~L~~~~~~~~~~p~~ 204 (213)
+|++|++++|++| ++|+||+++++.+.++...+. . .+| +|.+|++||.+++++
T Consensus 153 le~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~~---~-~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 153 LDKLIDGPNAVNG-ELSEDDILVFPLLRNLTLVAG---I-NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHHhCccccCC-CCCHHHHHHHHHhcCeeeecC---C-CCChHHHHHHHHHHHHhCC
Confidence 9999999999965 699999999999998776432 1 256 999999999998764
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.95 E-value=1e-27 Score=174.36 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=154.9
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDK 82 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~ 82 (213)
.+.||.++.|--++|||++++++||+|+...|++..++...++|..+||.|.|||+.+++-+|+|+..|++|+++.+-.
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~g- 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTG- 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcc-
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCC--CchhhHHhHHH--HH-------h----------hhcCcchhhhhhhhhhcc------C---C--------
Q 046920 83 GTQLTCPG--KPIAPLLVWKE--VE-------A----------LQFDPPSSKLNWELVYKP------M---F-------- 124 (213)
Q Consensus 83 ~~~l~p~~--~~~~~~~~~~~--~~-------~----------~~~~~~~~~~~~~~~~~~------~---~-------- 124 (213)
...|.|.- .+..++...-. +. . +...|....+ .....+. . .
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~i-R~~~~k~~~~v~~l~~~e~pdla~ay 183 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEI-RRHLAKATTDVMKLDHEEEPDLAEAY 183 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHH-HHHHHHHHHHHHHHHhhcCchhhHHH
Confidence 34677742 22222222111 11 0 0011111100 0000000 0 0
Q ss_pred -----------CCCCChHHHHHHHHHHHHHHHHHHhhccC----CceecCCCchHhHhhhhhHHHHHhcCCCcc---ccC
Q 046920 125 -----------GMTTDPAAVEENEAKLAKILDVYEARLSQ----SKYLACDSFTLVDLHHLPNINLLLGTPVKK---LFD 186 (213)
Q Consensus 125 -----------~~~~~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~---~~~ 186 (213)
..-.+....+...+.+.+.++.+|+.|.. .+||+|+++|+||+.+.++|+++...+... ...
T Consensus 184 ~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~g 263 (325)
T KOG4420|consen 184 LAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDG 263 (325)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccC
Confidence 00122234456667788888899998877 689999999999999999999999886543 345
Q ss_pred CCccHHHHHHHHhcChhHHHHHhhh
Q 046920 187 ARPHVSAWAADITSRPAWAKVLALL 211 (213)
Q Consensus 187 ~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (213)
..|+|..|+++++.|++|+++++..
T Consensus 264 srpnle~Yf~rvrrR~sf~kvlg~~ 288 (325)
T KOG4420|consen 264 SRPNLESYFERVRRRFSFRKVLGDI 288 (325)
T ss_pred CCccHHHHHHHHHhhhHHHHhhhhH
Confidence 7899999999999999999998753
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.93 E-value=1.9e-24 Score=183.57 Aligned_cols=156 Identities=14% Similarity=0.125 Sum_probs=128.0
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEe-CCEEeeehHHHHHHHHhhC
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH-GDQKLFESRAITQYIAQEF 79 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~-~~~~i~eS~~I~~yL~~~~ 79 (213)
|+ ++||+.+.|+ +.++.++|++.|++|+.+. .+|.|+||+|++ +|.+|+||.+|++||++.+
T Consensus 1 ~~-~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~ 63 (722)
T PLN02907 1 ME-AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSA 63 (722)
T ss_pred Ce-EEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhC
Confidence 77 8999998775 6689999999999999864 168999999996 5599999999999999999
Q ss_pred CCCCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceec
Q 046920 80 PDKGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLA 158 (213)
Q Consensus 80 ~~~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 158 (213)
+. +.|+|.+ .+++++++|+.+..... . ...+...++.||.+|++++||+
T Consensus 64 p~--~~L~p~d~~erAqV~qWL~~~~~~~---------------------~-------~~~l~~~L~~LE~~L~~rtYLv 113 (722)
T PLN02907 64 SL--PGFYGQDAFESSQVDEWLDYAPTFS---------------------S-------GSEFENACEYVDGYLASRTFLV 113 (722)
T ss_pred CC--cCCCCCCHHHHHHHHHHHHHHhhcc---------------------c-------HHHHHHHHHHHHHHhccCCeec
Confidence 74 4799988 89999999999764311 0 0134567899999999999999
Q ss_pred CCCchHhHhhhhhHHHHHh-cCCCccccCCCccHHHHHHHHhcChh
Q 046920 159 CDSFTLVDLHHLPNINLLL-GTPVKKLFDARPHVSAWAADITSRPA 203 (213)
Q Consensus 159 G~~~t~aDi~l~~~l~~~~-~~~~~~~~~~~p~L~~~~~~~~~~p~ 203 (213)
|+++|+|||++++.+.... ..........+|+|.+|++++.++|+
T Consensus 114 Gd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 114 GYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 9999999999999986541 11111235789999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.6e-21 Score=137.21 Aligned_cols=179 Identities=22% Similarity=0.286 Sum_probs=136.4
Q ss_pred CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCCCCCCCCC
Q 046920 10 VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDKGTQLTCP 89 (213)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~~~~l~p~ 89 (213)
..||||+++.+.|.++|++|.++.|++. ..+++|..+.|.|++|+|..++.++.||..|-++|.+.++.+ . ++.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p--~-~~~ 92 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPP--K-LPT 92 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCC--C-Ccc
Confidence 4599999999999999999999999998 567899999999999999999999999999999999999953 2 222
Q ss_pred CCchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC---CceecCCCchHhH
Q 046920 90 GKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ---SKYLACDSFTLVD 166 (213)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD 166 (213)
-.. .+......+.+. .+..++ ....+...+...+.+.+.+..|+++|+. ++|+.||++|.||
T Consensus 93 ~~~----~E~asag~diF~-kF~~fi----------~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aD 157 (221)
T KOG1422|consen 93 LAP----PESASAGSDIFA-KFSAFI----------KKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLAD 157 (221)
T ss_pred cCC----HHHHhhHHHHHH-HHHHHH----------hCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeeh
Confidence 000 111111111111 111111 1223334455677888999999999985 8999999999999
Q ss_pred hhhhhHHHHHhcCCCc----cccCCCccHHHHHHHHhcChhHHHHHh
Q 046920 167 LHHLPNINLLLGTPVK----KLFDARPHVSAWAADITSRPAWAKVLA 209 (213)
Q Consensus 167 i~l~~~l~~~~~~~~~----~~~~~~p~L~~~~~~~~~~p~~~~~~~ 209 (213)
+.+.|-|+.+...... ..-+..+.+.+|++.+.++.+|..+..
T Consensus 158 csLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp 204 (221)
T KOG1422|consen 158 CSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCP 204 (221)
T ss_pred hhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCc
Confidence 9999999998876322 244668999999999999999876543
No 24
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.86 E-value=2.5e-21 Score=119.52 Aligned_cols=73 Identities=33% Similarity=0.476 Sum_probs=68.5
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
++||++..||+|+|++++|+++|++|+.+.+++..++...+++.++||.|+||+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999987776777899999999999999999999999999999985
No 25
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.85 E-value=9.1e-21 Score=139.84 Aligned_cols=193 Identities=15% Similarity=0.158 Sum_probs=135.4
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDK 82 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~ 82 (213)
.++||.+..||||.|||.+|.+.||+|++++|++... . -.+.....+||+|+..|+.+.||.+|+.-|+.-..++
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r----~-eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~ 164 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR----Q-EIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDK 164 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh----h-hccccccccccEEEeccceechhHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999987621 1 2233578999999998877999999998875533211
Q ss_pred CC------CCCC-----------------------------CC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCC--
Q 046920 83 GT------QLTC-----------------------------PG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMF-- 124 (213)
Q Consensus 83 ~~------~l~p-----------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (213)
+. .++| .+ +.+..-+.|..|.++.+...+++-+|.++-....
T Consensus 165 ~q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletF 244 (370)
T KOG3029|consen 165 RQDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETF 244 (370)
T ss_pred CCCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHH
Confidence 00 1122 01 2233456677777776666666655544322211
Q ss_pred ------CC-----C----------------------CChHHHHHHHHHHHHHHHHHHhhc-cCCceecCCCchHhHhhhh
Q 046920 125 ------GM-----T----------------------TDPAAVEENEAKLAKILDVYEARL-SQSKYLACDSFTLVDLHHL 170 (213)
Q Consensus 125 ------~~-----~----------------------~~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aDi~l~ 170 (213)
|. . +........++.+.+..+.+-+.| .+++|+.|++|++||+.+|
T Consensus 245 ewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 245 EWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhh
Confidence 00 0 111112234555666666666666 4589999999999999999
Q ss_pred hHHHHHhcCCCccccCCCccHHHHHHHHhc
Q 046920 171 PNINLLLGTPVKKLFDARPHVSAWAADITS 200 (213)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (213)
++|+.+.++..+.+.-...++..|+-+|++
T Consensus 325 Gvl~sm~gc~afkd~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 325 GVLRSMEGCQAFKDCLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhHhhhhhHHHHHHhcchHHHHHHHHHH
Confidence 999999999777667778999999999975
No 26
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.84 E-value=1.2e-20 Score=117.25 Aligned_cols=74 Identities=34% Similarity=0.402 Sum_probs=69.4
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHh
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQ 77 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~ 77 (213)
++||+++.||+|++++++|+++|++|+.+.+++.+++...+++.+.||.|+||+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999877666778999999999999999999999999999999974
No 27
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.83 E-value=3.4e-20 Score=115.78 Aligned_cols=76 Identities=34% Similarity=0.633 Sum_probs=70.3
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEF 79 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~ 79 (213)
++||+++.|++|++++++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999999987666666789999999999999998999999999999999874
No 28
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.83 E-value=1.6e-20 Score=116.84 Aligned_cols=73 Identities=42% Similarity=0.638 Sum_probs=68.4
Q ss_pred EeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCC
Q 046920 6 VHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD 81 (213)
Q Consensus 6 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~ 81 (213)
||++..||||+|+|++|+++||+|+.+.++.. ...+++.+.||.|+||+|+++|.+++||.+|++||++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE---EKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT---STSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc---cchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCC
Confidence 79999999999999999999999999999866 34788999999999999999999999999999999999984
No 29
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.83 E-value=4.8e-20 Score=115.14 Aligned_cols=75 Identities=56% Similarity=0.926 Sum_probs=69.8
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhh
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQE 78 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~ 78 (213)
++||+++.||+|++++++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 789999999999999999999999999999998766666788999999999999999999999999999999863
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.83 E-value=3.6e-20 Score=115.81 Aligned_cols=75 Identities=28% Similarity=0.320 Sum_probs=66.0
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC--CEEeeehHHHHHHHHhhC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG--DQKLFESRAITQYIAQEF 79 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~--~~~i~eS~~I~~yL~~~~ 79 (213)
|++||+++.||+|+|++++|.++||+|+.+.++. ++...+++.+.||.|+||+|+++ |.+++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~--~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPK--GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 4899999999999999999999999999988753 23345788999999999999984 489999999999999874
No 31
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.83 E-value=6.5e-20 Score=115.91 Aligned_cols=77 Identities=35% Similarity=0.519 Sum_probs=70.6
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC---CEEeeehHHHHHHHHhhC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG---DQKLFESRAITQYIAQEF 79 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~---~~~i~eS~~I~~yL~~~~ 79 (213)
+++||+++. |+|++++++|+++|++|+.+.+++..++...+++.+.||.|+||+|+++ |.+|+||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 479999985 9999999999999999999999986666677899999999999999998 789999999999999988
Q ss_pred C
Q 046920 80 P 80 (213)
Q Consensus 80 ~ 80 (213)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 32
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.82 E-value=8.1e-20 Score=113.18 Aligned_cols=73 Identities=33% Similarity=0.517 Sum_probs=67.7
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEF 79 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~ 79 (213)
|+||+.+.||+|++++++|+++|++|+.+.++.. +..+++++.||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998865 456889999999999999999999999999999999874
No 33
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.82 E-value=1.1e-19 Score=112.82 Aligned_cols=73 Identities=34% Similarity=0.494 Sum_probs=66.7
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCC-CCCCeEEeCCEEeeehHHHHHHHHhhC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPF-GQVPVLEHGDQKLFESRAITQYIAQEF 79 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-g~vP~l~~~~~~i~eS~~I~~yL~~~~ 79 (213)
|+||++..||+|+|++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988765 456788999996 999999999999999999999999864
No 34
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=1.4e-19 Score=112.16 Aligned_cols=73 Identities=41% Similarity=0.535 Sum_probs=68.0
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
++||+++.||+|++++++|+++|++|+.+.+++..++...+++.+.||.|++|+|+++|.++.||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999887666677889999999999999999999999999999984
No 35
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.81 E-value=1.3e-19 Score=114.97 Aligned_cols=69 Identities=25% Similarity=0.335 Sum_probs=64.3
Q ss_pred CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCC
Q 046920 10 VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD 81 (213)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~ 81 (213)
..||||+|+|++|+++||+|+.+.+++. +.+++|.++||.|+||+|+++|.+|+||.+|++||++++..
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 4599999999999999999999999987 45689999999999999999999999999999999999873
No 36
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.81 E-value=1.7e-19 Score=111.69 Aligned_cols=73 Identities=40% Similarity=0.567 Sum_probs=66.9
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
++||+++.||++++++++|+++|++|+.+.++...++...+++.+.||.|+||+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998875555567889999999999999999999999999999984
No 37
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.80 E-value=5.9e-19 Score=129.61 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=121.3
Q ss_pred CChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCCCCCCCCCC
Q 046920 11 FSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDKGTQLTCPG 90 (213)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~~~~l~p~~ 90 (213)
.||||.||..+|+..+||||.+.-.+. ...+.|++|.++.+|+.|.||..|..+|.+.+.-. ..++.
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~~----------~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~--~~L~~- 126 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSLK----------RRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIP--DDLSA- 126 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccce----------eeccCCCcceEEeCCeeccccHHHHHHHHHHcCCC--CCCCH-
Confidence 599999999999999999998865442 33678999999999999999999999999998843 31333
Q ss_pred CchhhHHhHHHHHhh----------------------hcC------cchhhhhhhh-----hhccCCCCCCChHHHHHHH
Q 046920 91 KPIAPLLVWKEVEAL----------------------QFD------PPSSKLNWEL-----VYKPMFGMTTDPAAVEENE 137 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~----------------------~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 137 (213)
++++........... .+. +.....++.. ..+...+. -..-..++..
T Consensus 127 e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~-IG~f~~~Ei~ 205 (281)
T KOG4244|consen 127 EQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA-IGDFESAEID 205 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc-ccCcCHHHHH
Confidence 222222222211110 000 0111111111 11111111 1111224467
Q ss_pred HHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCcc-----ccCCCccHHHHHHHHhcC
Q 046920 138 AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK-----LFDARPHVSAWAADITSR 201 (213)
Q Consensus 138 ~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~-----~~~~~p~L~~~~~~~~~~ 201 (213)
+.+.+.++.+++.|++++||+||++|-+|+++|+.|..+.+ +... ...++|+|..|++|+++.
T Consensus 206 ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 206 ELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred HHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999988 3221 447899999999999863
No 38
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.80 E-value=3.2e-19 Score=110.52 Aligned_cols=73 Identities=37% Similarity=0.484 Sum_probs=68.1
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
|+||++..|++|++++++|+++|++|+.+.+++..++...+++.+.||.|++|+|++++.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987666677899999999999999999999999999999985
No 39
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.80 E-value=3.9e-19 Score=111.23 Aligned_cols=76 Identities=37% Similarity=0.474 Sum_probs=69.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC-CEEeeehHHHHHHHHhhCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG-DQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~-~~~i~eS~~I~~yL~~~~~ 80 (213)
++||+++.| ++++++++|+++|++|+.+.++..++++..+++.+.||.|++|+|+++ |.+++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999866 689999999999999999999987766778899999999999999998 6999999999999999875
No 40
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.80 E-value=2.6e-19 Score=111.18 Aligned_cols=73 Identities=40% Similarity=0.548 Sum_probs=66.5
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEe-CCEEeeehHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH-GDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~-~~~~i~eS~~I~~yL~ 76 (213)
++||+++.||+|+|++++|+++|++|+.+.++...++...+++.+.||.|++|+|++ ++..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 589999999999999999999999999999988766566788999999999999996 5589999999999985
No 41
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.79 E-value=3.2e-19 Score=110.31 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=65.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHh
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQ 77 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~ 77 (213)
++||+++.|++|+++|++|.++|++|+.+.++.. ...+++.+.||.|++|+|+++|.+++||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 7999999999999999999999999999999863 2345788999999999999999999999999999986
No 42
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.79 E-value=5.5e-19 Score=109.92 Aligned_cols=72 Identities=28% Similarity=0.375 Sum_probs=66.4
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC-CEEeeehHHHHHHHHh
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG-DQKLFESRAITQYIAQ 77 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~-~~~i~eS~~I~~yL~~ 77 (213)
+||+++.||+|++++++|+++|++|+.+.++...+ +..+++.+.||.|++|+|+++ |.+|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999998644 567899999999999999985 6899999999999986
No 43
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.79 E-value=9.3e-19 Score=109.26 Aligned_cols=76 Identities=38% Similarity=0.536 Sum_probs=68.8
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~ 80 (213)
++||+++. +++++++++|+++|++|+.+.++...++...+++.+.||.+++|+|+++|.+++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 57998875 68999999999999999999998865556778999999999999999999999999999999999874
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=9e-19 Score=107.79 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=63.0
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC-CEEeeehHHHHHHH
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG-DQKLFESRAITQYI 75 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~-~~~i~eS~~I~~yL 75 (213)
+||++..||+|+|++++|+++|++|+.+.++.. +..+++.+.||.|+||+|+++ |..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK---NKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC---CCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999886 345789999999999999996 69999999999997
No 45
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.78 E-value=5.9e-19 Score=108.94 Aligned_cols=72 Identities=29% Similarity=0.356 Sum_probs=64.4
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHh
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQ 77 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~ 77 (213)
++||+++.|++|+++|++|+++|++|+.+.++...+ ..+++.+.||.|++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 589999999999999999999999999999887532 234578899999999999999999999999999974
No 46
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.78 E-value=1.3e-18 Score=108.35 Aligned_cols=72 Identities=43% Similarity=0.663 Sum_probs=63.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCC-CCCCeEEeC-CEEeeehHHHHHHHHh
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPF-GQVPVLEHG-DQKLFESRAITQYIAQ 77 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-g~vP~l~~~-~~~i~eS~~I~~yL~~ 77 (213)
++||+.+ ++++++|++|+++|++|+.+.+++..++...+++.+.||. |++|+|+++ |.+|+||.||++||++
T Consensus 3 l~l~~~~--~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGR--GRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSS--TTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEECCC--CchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 5555554 4999999999999999999999998777777999999999 999999999 7999999999999985
No 47
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.3e-18 Score=128.29 Aligned_cols=195 Identities=21% Similarity=0.171 Sum_probs=143.3
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCC----ceEEeccCCCCC-CCchh------------------hhhcCC----CCCCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELE----YELVPVDMKAGE-HKKEA------------------FLSLNP----FGQVP 56 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~----~~~~~v~~~~~~-~~~~~------------------~~~~~p----~g~vP 56 (213)
+.||....|||++|..++-+++|+. +.++.-.+.+.+ +..++ |....| .-+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 6899999999999999999999994 121111111110 11111 001122 23699
Q ss_pred eEEeCC---EEeeehHHHHHHHHhhCCC---CCCCCCCCCCchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCCh
Q 046920 57 VLEHGD---QKLFESRAITQYIAQEFPD---KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDP 130 (213)
Q Consensus 57 ~l~~~~---~~i~eS~~I~~yL~~~~~~---~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (213)
+|.+.. -|--||..|++-+...+++ ....++|. .-+.+++.+.+++.+.+...+-.. |....+
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~-~Lr~eId~~n~~Iy~~vNNGVYk~----------GFA~tq 200 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE-ALRTEIDELNKWIYDTVNNGVYKA----------GFATTQ 200 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH-HHHHHHHHHHhhhcccccCceeee----------cccchH
Confidence 999976 4448999999998876543 24578887 667788888887766554433222 345677
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCcc------ccCCCccHHHHHHHHhcChhH
Q 046920 131 AAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK------LFDARPHVSAWAADITSRPAW 204 (213)
Q Consensus 131 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~------~~~~~p~L~~~~~~~~~~p~~ 204 (213)
++.++..+.+...|+.||+.|+++.|++||++|-||+-+++.|-++.-+.... -+.+||+|..|++.+.+.|+|
T Consensus 201 ~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~ 280 (324)
T COG0435 201 EAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGF 280 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCccc
Confidence 78899999999999999999999999999999999999999998877652221 346699999999999999999
Q ss_pred HHHHh
Q 046920 205 AKVLA 209 (213)
Q Consensus 205 ~~~~~ 209 (213)
+++..
T Consensus 281 ~~T~d 285 (324)
T COG0435 281 AETVD 285 (324)
T ss_pred ccccc
Confidence 98754
No 48
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.76 E-value=2.8e-18 Score=105.11 Aligned_cols=68 Identities=43% Similarity=0.607 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHhcCCCceEEeccC-CCCCCCchhhhhcCCCCCCCeEEeC-CEEeeehHHHHHHHHhh
Q 046920 11 FSTATQRVFASLYEKELEYELVPVDM-KAGEHKKEAFLSLNPFGQVPVLEHG-DQKLFESRAITQYIAQE 78 (213)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~~~~~~v~~-~~~~~~~~~~~~~~p~g~vP~l~~~-~~~i~eS~~I~~yL~~~ 78 (213)
.|||++|++++|+++|++|+...+.. ..+....++|.+.||.|+||+|+++ |.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988844 3334566899999999999999985 59999999999999874
No 49
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.76 E-value=7.4e-18 Score=114.11 Aligned_cols=117 Identities=65% Similarity=1.042 Sum_probs=92.8
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+++++.+|+.+....+.+.+....+........+...+++..+.....+.+.++.||+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 57889999999888887776655443333333333456666777888999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHH
Q 046920 172 NINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 208 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (213)
.+.++...+.....+.+|+|++|++++.++|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 9988764322223568999999999999999998863
No 50
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.76 E-value=2.7e-18 Score=105.72 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=60.9
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC-CEEeeehHHHHHHHHh
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG-DQKLFESRAITQYIAQ 77 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~-~~~i~eS~~I~~yL~~ 77 (213)
|+||++..||+|+|+|++|+++|++|+.+.++... .....+.||.+++|+|+++ |.++.||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887431 2244567999999999987 6999999999999974
No 51
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=5e-18 Score=105.09 Aligned_cols=70 Identities=31% Similarity=0.446 Sum_probs=63.3
Q ss_pred eEEeccCCChhHHHHHHHHHh--cCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEe-CCEEeeehHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLYE--KELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH-GDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~-~~~~i~eS~~I~~yL~ 76 (213)
++||++..||+|+|++++|++ +|++|+.+.++.. ...+++.+.||.|++|+|++ +|.++.||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999864 45678999999999999986 5699999999999985
No 52
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.75 E-value=4.6e-18 Score=108.14 Aligned_cols=70 Identities=29% Similarity=0.438 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC-CEEeeehHHHHHHHHhhCC
Q 046920 10 VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG-DQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~-~~~i~eS~~I~~yL~~~~~ 80 (213)
+.||+|+|+|++|.++|++|+.+.+++...+...+++ +.||.|++|+|+++ +.++.||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5699999999999999999999999876544434455 78999999999999 7999999999999999875
No 53
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=5.3e-18 Score=108.87 Aligned_cols=71 Identities=31% Similarity=0.473 Sum_probs=64.8
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC-CEEeeehHHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG-DQKLFESRAITQYIA 76 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~-~~~i~eS~~I~~yL~ 76 (213)
+++||+.+.||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |.+++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 589999999999999999999999999999998753 34678899999999999987 699999999999985
No 54
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.75 E-value=6.3e-18 Score=106.70 Aligned_cols=75 Identities=23% Similarity=0.230 Sum_probs=64.1
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCC-chhhhh-c----CCCCCCCeEEeCCEEeeehHHHHHHHHhh
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHK-KEAFLS-L----NPFGQVPVLEHGDQKLFESRAITQYIAQE 78 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~-~~~~~~-~----~p~g~vP~l~~~~~~i~eS~~I~~yL~~~ 78 (213)
+||++..++.|+++|++|+++|++|+.+.+++.+++.. .+++.. . +|+|+||+|+++|.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 68999999999999999999999999999998765433 244432 2 39999999999999999999999999986
Q ss_pred C
Q 046920 79 F 79 (213)
Q Consensus 79 ~ 79 (213)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 55
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.75 E-value=1e-17 Score=104.09 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=61.1
Q ss_pred ceEEeccC-------CChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHH
Q 046920 3 GIKVHGSV-------FSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL 75 (213)
+++||++. .||+|+|++++|+++|++|+.+.++.. +.||.|++|+|+++|.++.||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 46899997 689999999999999999999877542 5699999999999999999999999999
Q ss_pred HhhCC
Q 046920 76 AQEFP 80 (213)
Q Consensus 76 ~~~~~ 80 (213)
+++++
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 56
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.74 E-value=1.3e-17 Score=104.31 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=62.6
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC----CEEeeehHHHHHHHHhh
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG----DQKLFESRAITQYIAQE 78 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~----~~~i~eS~~I~~yL~~~ 78 (213)
+++||+++.||+|++++++|.++|++|+.+.++... .++ ...||.++||+|+++ +.+|.||.+|++||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 489999999999999999999999999999886542 223 356999999999976 58999999999999987
Q ss_pred C
Q 046920 79 F 79 (213)
Q Consensus 79 ~ 79 (213)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 4
No 57
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.72 E-value=3.2e-17 Score=102.81 Aligned_cols=72 Identities=25% Similarity=0.234 Sum_probs=62.2
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhh-----cCCCCCCCeEEeCCEEeeehHHHHHHHHh
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLS-----LNPFGQVPVLEHGDQKLFESRAITQYIAQ 77 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~-----~~p~g~vP~l~~~~~~i~eS~~I~~yL~~ 77 (213)
+++||+++.|+.|++++++|+++|++|+.+.++.. +++.+ .+|+|+||+|+++|.+|+||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 36899999999999999999999999999988753 22222 24699999999989999999999999999
Q ss_pred hCC
Q 046920 78 EFP 80 (213)
Q Consensus 78 ~~~ 80 (213)
+++
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 987
No 58
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.9e-16 Score=108.68 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=129.7
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC-EEeeehHHHHHHHHhhCCCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD-QKLFESRAITQYIAQEFPDK 82 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~-~~i~eS~~I~~yL~~~~~~~ 82 (213)
|+||-+..||||-|+|++...+|||++.+.+.-.+.++ -...-...+||+|+-.| ..+-||..|.+|+++..+.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T----p~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET----PIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccC----hhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 57999999999999999999999999998876543222 22334467899998766 99999999999999998842
Q ss_pred CCCCCCCCCchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCC--------------CCC----h---HHHHHHHHHHH
Q 046920 83 GTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGM--------------TTD----P---AAVEENEAKLA 141 (213)
Q Consensus 83 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~----~---~~~~~~~~~~~ 141 (213)
++.. .-+..+..|+............+ ++.+..+.+ +.. + ........++.
T Consensus 77 ---~lt~-~~~pai~~wlrkv~~y~nkll~P----R~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~ 148 (215)
T COG2999 77 ---LLTG-KVRPAIEAWLRKVNGYLNKLLLP----RFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQ 148 (215)
T ss_pred ---hhcc-CcCHHHHHHHHHhcchHhhhhhh----hHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHH
Confidence 3322 55677888887665433332222 221111110 000 0 11134566778
Q ss_pred HHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHH
Q 046920 142 KILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWA 205 (213)
Q Consensus 142 ~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~ 205 (213)
..++.++.++....-+-| .++.-||.+|+.|+.+..+... .-..++..|..+|.+...+.
T Consensus 149 ~dl~~l~~Li~~~s~~n~-~l~~ddi~vFplLRnlt~v~gi---~wps~v~dy~~~msektqV~ 208 (215)
T COG2999 149 ADLRALDKLIVGPSAVNG-ELSEDDILVFPLLRNLTLVAGI---QWPSRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHHHHHHHHhcCcchhcc-ccchhhhhhhHHhccceecccC---CCcHHHHHHHHHHHHhhCcc
Confidence 888899998876553444 5999999999999999888653 33457999999998765443
No 59
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.71 E-value=7e-17 Score=108.60 Aligned_cols=112 Identities=20% Similarity=0.281 Sum_probs=87.8
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+++++++|+.+....+.+......+..... .+....+...+.....+.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWA--TDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccc--cChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHH
Confidence 588999999999888887765443321110 011223455667788899999999999998899999999999999999
Q ss_pred HHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHH
Q 046920 172 NINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKV 207 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~ 207 (213)
.+.++...+. ....+|+|.+|++++.++|+|+++
T Consensus 80 ~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~k~~ 113 (114)
T cd03188 80 VLRWAPGVGL--DLSDWPNLAAYLARVAARPAVQAA 113 (114)
T ss_pred HHHHHhhcCC--ChhhChHHHHHHHHHHhCHHhHhh
Confidence 9988765432 356899999999999999999986
No 60
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=7.6e-17 Score=99.56 Aligned_cols=67 Identities=27% Similarity=0.455 Sum_probs=60.6
Q ss_pred cCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 9 SVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 9 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
...|+++++++++|+++|++|+.+.++...+ ...+++.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4679999999999999999999999987653 346889999999999999999999999999999984
No 61
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.68 E-value=3.6e-16 Score=105.01 Aligned_cols=112 Identities=23% Similarity=0.343 Sum_probs=90.1
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+++++++|+.|....+.+..........+. .+.++...+.....+.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 76 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYA----PEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFP 76 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhC----CCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHH
Confidence 478999999999988888766443222111 1234556677788899999999999998999999999999999999
Q ss_pred HHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHH
Q 046920 172 NINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 208 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (213)
.+.+....+.. ....+|+|.+|++++.++|+|++++
T Consensus 77 ~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 77 WVRRLEWIGID-DLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHhcccc-chhhchHHHHHHHHHhhCHHHHHhc
Confidence 99988665432 3678999999999999999999875
No 62
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.67 E-value=8.6e-16 Score=105.23 Aligned_cols=119 Identities=22% Similarity=0.389 Sum_probs=89.6
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccC-CCCCCChHHHHHHHHHHHHHHHHHHhh-ccCCceecCCCchHhHhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPM-FGMTTDPAAVEENEAKLAKILDVYEAR-LSQSKYLACDSFTLVDLHH 169 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~-L~~~~~l~G~~~t~aDi~l 169 (213)
+++++++|+.+....+.+.............. .+....+...+...+.+.+.++.+|+. +++++|++||++|+|||++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 1 KRARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSA 80 (126)
T ss_pred CcccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHH
Confidence 36788999998887776654433222222111 123345667778888999999999997 5557899999999999999
Q ss_pred hhHHHHHhcCCCccccCCCccHHHHHHHHhc--ChhHHHHHhhh
Q 046920 170 LPNINLLLGTPVKKLFDARPHVSAWAADITS--RPAWAKVLALL 211 (213)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~--~p~~~~~~~~~ 211 (213)
++.+.+....+. +..+.+|+|.+|++++.+ ||+|+++.+.+
T Consensus 81 ~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~~ 123 (126)
T cd03183 81 VCEIMQPEAAGY-DVFEGRPKLAAWRKRVKEAGNPLFDEAHKII 123 (126)
T ss_pred HHHHHHHHhcCC-cccccCchHHHHHHHHHHhcchhHHHHHHHH
Confidence 998877765543 235889999999999999 99999987654
No 63
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.67 E-value=1.9e-16 Score=106.60 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=87.1
Q ss_pred CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhh
Q 046920 91 KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHL 170 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~ 170 (213)
..++.+++|+.+....+.+.+....+..... . +..+...+.+.+.++.+|+.|++++|++||++|+|||+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~ 76 (115)
T cd03196 5 AALKEMLALIAENDNEFKHHLDRYKYADRYP------E--ESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIF 76 (115)
T ss_pred HHHHHHHHHHHHcchhhHHHHHhccchhhcC------c--ccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHH
Confidence 6789999999999988887776655442211 1 1356778899999999999999999999999999999999
Q ss_pred hHHHHHhcCCCc-cccCCCccHHHHHHHHhcChhHHHH
Q 046920 171 PNINLLLGTPVK-KLFDARPHVSAWAADITSRPAWAKV 207 (213)
Q Consensus 171 ~~l~~~~~~~~~-~~~~~~p~L~~~~~~~~~~p~~~~~ 207 (213)
+.+.++...... ...+.+|+|.+|++++.++|+|+++
T Consensus 77 ~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 77 PFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 988766533111 1358899999999999999999985
No 64
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.8e-16 Score=115.08 Aligned_cols=194 Identities=22% Similarity=0.200 Sum_probs=137.5
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCC--CCCchhhhh------------------------------cCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAG--EHKKEAFLS------------------------------LNP 51 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~------------------------------~~p 51 (213)
+-||..-.|||++|..+.++++|+.-. +.+....| +.....|.. ..|
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~-i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p 116 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPA-IGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASP 116 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCcccc-ceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCC
Confidence 678988899999999999999999421 11111000 011111111 112
Q ss_pred C--C--CCCeEEeCC---EEeeehHHHHHHHHhhCCC-------CCCCCCCCCCchhhHHhHHHHHhhhcCcchhhhhhh
Q 046920 52 F--G--QVPVLEHGD---QKLFESRAITQYIAQEFPD-------KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWE 117 (213)
Q Consensus 52 ~--g--~vP~l~~~~---~~i~eS~~I~~yL~~~~~~-------~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (213)
. | +||+|.|.. .|--||..|+|.+...+.+ ..-.|+|. .-++++++|..|+.+.+...+-..
T Consensus 117 ~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~-~L~~~Ide~N~wvy~~INNGVYk~--- 192 (319)
T KOG2903|consen 117 NYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS-SLRAQIDETNSWVYDKINNGVYKC--- 192 (319)
T ss_pred CCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH-HHHHHHhhhhceecccccCceeee---
Confidence 1 2 599999875 4558999999999943321 12367776 567888888888776655443322
Q ss_pred hhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCc--eecCCCchHhHhhhhhHHHHHhcCCCcc-------ccCCC
Q 046920 118 LVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSK--YLACDSFTLVDLHHLPNINLLLGTPVKK-------LFDAR 188 (213)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aDi~l~~~l~~~~~~~~~~-------~~~~~ 188 (213)
|....++.-+....++.+.|+.+|+.|+++. |++|+++|.|||.+++.+-++..+.... ..+.|
T Consensus 193 -------GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Y 265 (319)
T KOG2903|consen 193 -------GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEY 265 (319)
T ss_pred -------ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccC
Confidence 3345666778888999999999999999866 9999999999999999988776653221 44689
Q ss_pred ccHHHHHHHHhc-ChhHHHHHh
Q 046920 189 PHVSAWAADITS-RPAWAKVLA 209 (213)
Q Consensus 189 p~L~~~~~~~~~-~p~~~~~~~ 209 (213)
|+|-.|.+++.. .|+|+.+..
T Consensus 266 p~l~~~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 266 PNLHNWLKNIYWNIPGFSSTTD 287 (319)
T ss_pred cHHHHHHHHHHhhccchhhccc
Confidence 999999999987 899987654
No 65
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.66 E-value=5e-16 Score=95.00 Aligned_cols=71 Identities=52% Similarity=0.700 Sum_probs=63.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
++||+++.||+|++++++|+++|++|+.+.++...+. ..++.+.+|.+++|+|++++.++.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998865432 1257889999999999999999999999999984
No 66
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.66 E-value=5e-16 Score=108.45 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=86.6
Q ss_pred CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhh
Q 046920 91 KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHL 170 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~ 170 (213)
+.++++++|++|....+.+...... ...+++..+.....+.+.++.||+.|++++|++|+++|+|||+++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~ 72 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAG----------FATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLF 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHh----------hccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHH
Confidence 4578899999999988776543211 124455667788899999999999999999999999999999999
Q ss_pred hHHHHHhcCC------CccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 171 PNINLLLGTP------VKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 171 ~~l~~~~~~~------~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
+.+.++.... .......+|+|.+|++++.++|+|++++..
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~ 118 (142)
T cd03190 73 TTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNF 118 (142)
T ss_pred HHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCH
Confidence 9987663211 111346899999999999999999998754
No 67
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.66 E-value=1.3e-15 Score=101.67 Aligned_cols=109 Identities=28% Similarity=0.427 Sum_probs=85.0
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+++++++|+.+....+.+.+.......... .....++...+...+.+.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRT--PPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcC--CcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHH
Confidence 578899999999888888766543332111 122344556677888999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccCCCccHHHHHHHHhcChhH
Q 046920 172 NINLLLGTPVKKLFDARPHVSAWAADITSRPAW 204 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (213)
++........ ....+|+|.+|++++.++|+|
T Consensus 80 ~~~~~~~~~~--~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 80 SAYRWFELPI--ERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHccc--ccccCchHHHHHHHHHhCCCC
Confidence 9854443322 368899999999999999975
No 68
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.65 E-value=1.1e-15 Score=101.69 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=83.0
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+|++++.|+.+....+.+.+...... .++..+...+.+.+.+..||+.|++++|++|+++|+|||++++
T Consensus 3 ~ra~~r~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~ 71 (107)
T cd03186 3 ARARSRLLMHRIEQDWYPLVDTIEKG-----------RKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAP 71 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHH
Confidence 58899999999888766665433211 1444567788899999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHH
Q 046920 172 NINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKV 207 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~ 207 (213)
.+.+....+. .....+|+|++|++++.+||+++++
T Consensus 72 ~~~~~~~~~~-~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 72 LLWRLPALGI-ELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHcCC-CCcccchHHHHHHHHHHCCHHHHHh
Confidence 9876653332 1235799999999999999999875
No 69
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.63 E-value=2.2e-15 Score=102.47 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=84.4
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+++++++.++...+.... +..+++. +..+...+.....+.+.+..||++|++++|++|+++|+||+++++
T Consensus 2 e~~~id~~~~~~~d~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~ 71 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMG-LARICYS---------PDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYE 71 (121)
T ss_pred chHHHHHHHHHHHHHHHH-HHHhhcC---------cchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHH
Confidence 567788888776654322 2222111 112345566778899999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhhhc
Q 046920 172 NINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 212 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (213)
.+.++..... ...+.+|+|.+|++++.++|++++++++.+
T Consensus 72 ~~~~~~~~~~-~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~ 111 (121)
T cd03209 72 ALDQHRIFEP-DCLDAFPNLKDFLERFEALPKISAYMKSDR 111 (121)
T ss_pred HHHHHHHhCc-cccccChHHHHHHHHHHHCHHHHHHHhccc
Confidence 9988875432 236789999999999999999999998875
No 70
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.63 E-value=1.8e-15 Score=102.44 Aligned_cols=109 Identities=20% Similarity=0.262 Sum_probs=84.7
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+++++++|+.+....+.+............ .. ...+.....+.+.++.||+.|++++|++|+++|+||+++++
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~ 74 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFG----GA---EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVA 74 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHc----CC---CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHH
Confidence 578899999988777776655444332211 11 22345677899999999999998899999999999999999
Q ss_pred HHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHH
Q 046920 172 NINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 208 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (213)
.+.++...... ....+|+|++|++++.++|+|++..
T Consensus 75 ~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 75 TVSTLEALLPL-DLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHHHHHhcCC-ChhhCchHHHHHHHHHcccchHHHH
Confidence 99888752222 2467999999999999999999865
No 71
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.63 E-value=3.3e-15 Score=101.59 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=85.4
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhcc--CCceecCCCchHhHhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLS--QSKYLACDSFTLVDLHH 169 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aDi~l 169 (213)
+++++++|+.+....+.+............. .+ ...+...+...+.+.+.++.+|+.|+ .++||+|+++|+|||++
T Consensus 3 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~ 80 (121)
T cd03191 3 KRARVRALALIIACDIHPLNNLRVLKYLTEE-LG-LDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICL 80 (121)
T ss_pred hHHHHHHHHHHHHccCCccccHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHH
Confidence 5889999999999888876544443322111 01 01223334455678999999999997 45899999999999999
Q ss_pred hhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHh
Q 046920 170 LPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLA 209 (213)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~ 209 (213)
++.+.+....+. ....+|+|++|++++.++|+|+++..
T Consensus 81 ~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~~~~~~ 118 (121)
T cd03191 81 VPQVYNARRFGV--DLSPYPTIARINEACLELPAFQAAHP 118 (121)
T ss_pred HHHHHHHHHhCC--CcccCcHHHHHHHHHHhChhHHHhCc
Confidence 999987765432 25789999999999999999999765
No 72
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.63 E-value=1.8e-15 Score=93.25 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=57.6
Q ss_pred eEEeccC-------CChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 4 IKVHGSV-------FSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
++||.++ .||+|++++++|+++|++|+.+.++... .||.|++|+|+++|.++.||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~----------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW----------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc----------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 3577765 7999999999999999999999887531 6899999999999999999999999998
Q ss_pred hh
Q 046920 77 QE 78 (213)
Q Consensus 77 ~~ 78 (213)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 73
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.62 E-value=9e-16 Score=105.09 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=85.7
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+++++++|+.+....+.+........ .+...+.....+.+.++.||+.|++++|++|+++|+|||++++
T Consensus 3 ~ra~~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~ 71 (126)
T cd03185 3 ERAVARFWAAFIDDKLFPAGRKVLAA-----------KGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGS 71 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHH
Confidence 58889999999887776665433211 1334566788899999999999999999999999999999999
Q ss_pred HHHHHhcC---CCcc--ccCCCccHHHHHHHHhcChhHHHHHhhh
Q 046920 172 NINLLLGT---PVKK--LFDARPHVSAWAADITSRPAWAKVLALL 211 (213)
Q Consensus 172 ~l~~~~~~---~~~~--~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (213)
.+.++... .... ....+|+|.+|++++.++|++++++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 72 FLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred HHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCH
Confidence 98886532 1111 2467999999999999999999987653
No 74
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.61 E-value=3.6e-15 Score=101.65 Aligned_cols=116 Identities=22% Similarity=0.327 Sum_probs=91.4
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
+++++++|+.+....+.+.+...+.... . ....+....+.....+.+.++.+|+.|+.++|++|+++|+|||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~ 76 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLL-G---IAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAG 76 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHc-C---ccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHH
Confidence 4788999999998888877665443321 1 12344556778888999999999999999999999999999999999
Q ss_pred HHHHHhcCCC-ccccCCCccHHHHHHHHhcChhHHHHHhhh
Q 046920 172 NINLLLGTPV-KKLFDARPHVSAWAADITSRPAWAKVLALL 211 (213)
Q Consensus 172 ~l~~~~~~~~-~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (213)
.+.++..... ......+|++.+|++++.++|+|++++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 117 (123)
T cd03181 77 ALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEV 117 (123)
T ss_pred HHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCC
Confidence 9988743321 113467999999999999999999987754
No 75
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.61 E-value=4.3e-15 Score=100.71 Aligned_cols=112 Identities=22% Similarity=0.266 Sum_probs=84.0
Q ss_pred CC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCC----CCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCch
Q 046920 89 PG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMF----GMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFT 163 (213)
Q Consensus 89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 163 (213)
.+ .+++++++|+.+....+.+.+............. +...++...+.....+.+.++.||+.|++++|++||++|
T Consensus 3 ~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t 82 (119)
T cd03189 3 PDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKLT 82 (119)
T ss_pred CCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCCC
Confidence 45 7899999999999888777654332221111100 001234445566778999999999999999999999999
Q ss_pred HhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcCh
Q 046920 164 LVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRP 202 (213)
Q Consensus 164 ~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p 202 (213)
+|||++++.+.++...+. ....+|+|.+|++++.++|
T Consensus 83 ~ADi~l~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 83 AADIMMSFPLEAALARGP--LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred HHHHHHHHHHHHHHHcCc--ccccCchHHHHHHHHhcCC
Confidence 999999999988865543 4688999999999999986
No 76
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.60 E-value=4.9e-15 Score=100.11 Aligned_cols=113 Identities=21% Similarity=0.275 Sum_probs=86.9
Q ss_pred CchhhHHhHHHHHhhhcCcchhhhhhhhhh-ccC-CCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhh
Q 046920 91 KPIAPLLVWKEVEALQFDPPSSKLNWELVY-KPM-FGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLH 168 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~ 168 (213)
.+++.+++|+.+....+.+.+...+..... ... .....++...+.....+.+.++.||+.|++++|++||++|+|||+
T Consensus 3 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aDi~ 82 (117)
T cd03182 3 LERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIADIT 82 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH
Confidence 468899999999877766665544322110 010 012455667788889999999999999998899999999999999
Q ss_pred hhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhH
Q 046920 169 HLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAW 204 (213)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (213)
+++.+.++...+.. ....+|+|.+|++++.++|++
T Consensus 83 l~~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 83 AFVGLDFAKVVKLR-VPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHhHHHHhcCCC-CccccHHHHHHHHHHHhccCC
Confidence 99999988765432 346899999999999999973
No 77
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.58 E-value=2.4e-15 Score=102.68 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=82.5
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC--CceecCCCchHhHhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ--SKYLACDSFTLVDLHH 169 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l 169 (213)
+|++.+.|++++...+.+....+. . ++..+...+.+.+.++.+|+.|++ ++|++|+++|+||+++
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~ 68 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLG-A------------PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMI 68 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHh-c------------cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHh
Confidence 478889999988644333332221 0 223356778899999999999985 8999999999999999
Q ss_pred hhHHHHHhcCCCc----cccCCCccHHHHHHHHhcChhHHHHHhhhc
Q 046920 170 LPNINLLLGTPVK----KLFDARPHVSAWAADITSRPAWAKVLALLK 212 (213)
Q Consensus 170 ~~~l~~~~~~~~~----~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (213)
++.+.++...+.. ...+.+|+|++|++++.++|++++++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~ 115 (124)
T cd03184 69 WPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTE 115 (124)
T ss_pred hHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCCHH
Confidence 9998876644321 235789999999999999999999987643
No 78
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.58 E-value=8.7e-15 Score=101.47 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=79.8
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHH-HHHHHHHHHHHHHHHHhhcc--CCceecCCCchHhHhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAA-VEENEAKLAKILDVYEARLS--QSKYLACDSFTLVDLH 168 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aDi~ 168 (213)
+.+.+++.++...+....... ..+. .....++. .+.....+.+.+..||+.|+ +++|++|+++|+||++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~ 74 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILM-LPFL-------PPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIH 74 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HccC-------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHH
Confidence 456778887766654433221 1110 11111112 23334466899999999998 6789999999999999
Q ss_pred hhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhhhc
Q 046920 169 HLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 212 (213)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (213)
+++.+.++..... ..+..+|+|.+|++++.++|+++++++..+
T Consensus 75 l~~~l~~~~~~~~-~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 75 LLEAILMVEELDP-SLLSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHHHHHHHHhch-hhhccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 9999998765432 246889999999999999999999998654
No 79
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.56 E-value=7.9e-15 Score=96.85 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 132 AVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 132 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
..+.....+.+.++.||+.|++++|++|+++|+|||++++.+.+....+ ..+.+|+|++|++++.++|+|+++.+.
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG---LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 3456678899999999999999999999999999999999999987653 257899999999999999999998764
No 80
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.55 E-value=2.8e-14 Score=97.65 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=79.7
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC---CceecCCCchHhHhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ---SKYLACDSFTLVDLH 168 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aDi~ 168 (213)
+.+.+++.++...+...... ..++. ..+...+...+.+.+.+..||+.|++ ++|++|+++|+||++
T Consensus 3 e~~~vd~~~~~~~d~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~ 71 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYV-RMIYQ----------NYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYN 71 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcC----------cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHH
Confidence 45677777776554322111 11111 11233455667788999999999974 589999999999999
Q ss_pred hhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhhhc
Q 046920 169 HLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 212 (213)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (213)
+++.+.++..... ...+.+|+|.+|++++.++|+|+++++..+
T Consensus 72 l~~~~~~~~~~~~-~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 72 LFDLLDIHLVLAP-GCLDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred HHHHHHHHHHhCh-HhhhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 9999988765422 236889999999999999999999998765
No 81
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.55 E-value=3.2e-14 Score=94.19 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=82.3
Q ss_pred CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhh
Q 046920 91 KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHL 170 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~ 170 (213)
++++++++|+.+....+.+....+........ ....+++..+....++.+.++.||+.|++++|++|+++|+|||+++
T Consensus 1 ~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~ 78 (105)
T cd03179 1 EERAQVLRWLFFEQYSHEPYIATLRFLRVYLG--LGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALA 78 (105)
T ss_pred CcHHHHHHHHHHhhcccCccceeeeeeEeecc--CCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHH
Confidence 36889999999988887776654433322211 2345566777889999999999999999889999999999999999
Q ss_pred hHHHHHhcCCCccccCCCccHHHHHHHHh
Q 046920 171 PNINLLLGTPVKKLFDARPHVSAWAADIT 199 (213)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~p~L~~~~~~~~ 199 (213)
+.+.++...+. ....+|+|.+|++++.
T Consensus 79 ~~~~~~~~~~~--~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 79 AYTHVADEGGF--DLADYPAIRAWLARIE 105 (105)
T ss_pred HHHHhccccCC--ChHhCccHHHHHHhhC
Confidence 99998765433 2577999999999874
No 82
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.53 E-value=3e-14 Score=93.53 Aligned_cols=100 Identities=22% Similarity=0.355 Sum_probs=75.0
Q ss_pred HHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHH
Q 046920 96 LLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINL 175 (213)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~ 175 (213)
+++|+.+..+.+.+......+...... ....+....++.+.++.+|+.|++++|++|+++|+||+++++.+.+
T Consensus 1 ~~~w~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~ 73 (100)
T cd03206 1 VQRWLSVAAGEIANGPAAARLITLFGA-------PLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVAL 73 (100)
T ss_pred CceehhhhhhhcccchhHHHHHHHhCC-------HhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHH
Confidence 357888888877655433332211111 1134567889999999999999999999999999999999999876
Q ss_pred HhcCCCccccCCCccHHHHHHHHhcChhH
Q 046920 176 LLGTPVKKLFDARPHVSAWAADITSRPAW 204 (213)
Q Consensus 176 ~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (213)
....+. ....+|+|.+|++++.++|+|
T Consensus 74 ~~~~~~--~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 74 APEGGV--DLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HhccCC--ChhhCcHHHHHHHHHHhCcCC
Confidence 544322 357899999999999999975
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.53 E-value=3.4e-14 Score=92.35 Aligned_cols=94 Identities=14% Similarity=0.242 Sum_probs=73.9
Q ss_pred HHHHHhhCCCCCCCCCCCC-CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 046920 72 TQYIAQEFPDKGTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEAR 150 (213)
Q Consensus 72 ~~yL~~~~~~~~~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 150 (213)
+|||++..+ ++|++ .+++.+++|++.....+.. ...+.+.+.++.+|++
T Consensus 1 ~r~~~~~~~-----~~~~~~~~~~~vd~~~d~~~~~l~~-------------------------~~~~~~~~~l~~le~~ 50 (96)
T cd03200 1 ARFLYRLLG-----PAPNAPNAATNIDSWVDTAIFQLAE-------------------------GSSKEKAAVLRALNSA 50 (96)
T ss_pred CchHHHHhc-----ccCCCchHHHHHHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHH
Confidence 479999843 89988 9999999999965432220 0234455788889999
Q ss_pred ccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhc
Q 046920 151 LSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITS 200 (213)
Q Consensus 151 L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (213)
|++++|++|+++|+|||++++.+.+. +. ..+.+|+|.+|++++.+
T Consensus 51 L~~~~fl~Gd~~tiADi~l~~~l~~~---~~--~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 51 LGRSPWLVGSEFTVADIVSWCALLQT---GL--ASAAPANVQRWLKSCEN 95 (96)
T ss_pred HcCCCccCCCCCCHHHHHHHHHHHHc---cc--ccccChHHHHHHHHHHh
Confidence 99999999999999999999998753 11 24679999999999976
No 84
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.52 E-value=5.2e-14 Score=94.58 Aligned_cols=110 Identities=19% Similarity=0.118 Sum_probs=81.4
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhcc-CCceecCCCchHhHhhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLS-QSKYLACDSFTLVDLHHL 170 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aDi~l~ 170 (213)
+++++.+|+.+..+.+.+......+...+.. ...+...+...+.+.+.+..+|..|+ +++||+| ++|+||++++
T Consensus 3 ~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~ 77 (114)
T cd03195 3 QRARARQVQAWLRSDLLPIRVERSTEVVFAG----AKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLA 77 (114)
T ss_pred hhHHHHHHHHHHHhhHHHHHHhCCccceecC----CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHH
Confidence 5889999999998887765211111110111 11112335567777888999999995 4589999 5999999999
Q ss_pred hHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 171 PNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
+++.+....+.. ++ |++.+|++++.+||+|++++++
T Consensus 78 ~~~~~~~~~g~~--l~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 78 LMLNRLVLNGDP--VP--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHHHHcCCC--CC--HHHHHHHHHHHCCHHHHHHHhc
Confidence 999999887643 33 9999999999999999999864
No 85
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.52 E-value=4e-14 Score=96.65 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhccC----------------CceecCCCchHhHhhhhhHHHHHhcCC----CccccCC
Q 046920 128 TDPAAVEENEAKLAKILDVYEARLSQ----------------SKYLACDSFTLVDLHHLPNINLLLGTP----VKKLFDA 187 (213)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~aDi~l~~~l~~~~~~~----~~~~~~~ 187 (213)
.+++..+...+.+...|+.||++|++ ++|++|+++|+|||++++.+.++.... .......
T Consensus 22 ~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~ 101 (134)
T cd03198 22 SNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPAD 101 (134)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 34556677888999999999999986 679999999999999999988775321 1112478
Q ss_pred CccHHHHHHHHhcChhHHHHHhh
Q 046920 188 RPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 188 ~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
+|+|.+|++++.+||+|++++..
T Consensus 102 ~P~L~aw~~ri~aRPsfk~t~~~ 124 (134)
T cd03198 102 LTGLWRYLKNAYQREEFTNTCPA 124 (134)
T ss_pred CHHHHHHHHHHHCCHHHHHHcCC
Confidence 99999999999999999998754
No 86
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.51 E-value=4.8e-14 Score=91.65 Aligned_cols=74 Identities=32% Similarity=0.547 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcCh
Q 046920 129 DPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRP 202 (213)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p 202 (213)
.++..+.....+.+.++.+|+.|++++|++||++|+||+++++.+.++.........+.+|+|.+|++++.+||
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence 44566778889999999999999999999999999999999999999988865522389999999999999997
No 87
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.47 E-value=1.6e-13 Score=83.75 Aligned_cols=67 Identities=31% Similarity=0.408 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCc-cccCCCccHHHHHHH
Q 046920 131 AAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVK-KLFDARPHVSAWAAD 197 (213)
Q Consensus 131 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~-~~~~~~p~L~~~~~~ 197 (213)
...++..+.+.+.++.||++|++++|++|++||+||+++++.+.++...+.. ...+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 4567889999999999999999999999999999999999999999998653 246899999999986
No 88
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.46 E-value=2.7e-13 Score=89.79 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhccCC----------ceecCCCchHhHhhhhhHHHHHhcCCCccc---cCCCccHHH
Q 046920 127 TTDPAAVEENEAKLAKILDVYEARLSQS----------KYLACDSFTLVDLHHLPNINLLLGTPVKKL---FDARPHVSA 193 (213)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~---~~~~p~L~~ 193 (213)
..+.+..+.....+.+.++.||+.|+++ +|++|+++|+|||++++.+.++...+.... ...+|+|.+
T Consensus 21 ~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~ 100 (111)
T cd03204 21 HDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEA 100 (111)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHH
Confidence 3455677888999999999999999764 499999999999999999999876543211 367999999
Q ss_pred HHHHHhcChhH
Q 046920 194 WAADITSRPAW 204 (213)
Q Consensus 194 ~~~~~~~~p~~ 204 (213)
|++++.+||+|
T Consensus 101 w~~rv~aRpsf 111 (111)
T cd03204 101 YFERVLQRESF 111 (111)
T ss_pred HHHHHHcCCCC
Confidence 99999999985
No 89
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.46 E-value=2.9e-13 Score=91.79 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=68.8
Q ss_pred CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhcc---CCceecCCCchHhHh
Q 046920 91 KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLS---QSKYLACDSFTLVDL 167 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi 167 (213)
..|+++++++.+.. .+....+...+ +... .+.+.+.++.||+.|+ +++|++| ++|+|||
T Consensus 3 ~~ra~~~~~~~~~~-----~~~~~~~~~~~----~~~~--------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi 64 (120)
T cd03203 3 AKREFADELLAYTD-----AFTKALYSSLI----KGDP--------SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDI 64 (120)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHh----cCCc--------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHH
Confidence 46889999998821 11112222221 1111 1233556667777775 4899999 9999999
Q ss_pred hhhhHHHHHhc----CCCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 168 HHLPNINLLLG----TPVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 168 ~l~~~l~~~~~----~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
++++.+.++.. .......+.+|+|.+|++++.++|+|+++...
T Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 65 AYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred HHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 99999876542 11222346899999999999999999998763
No 90
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=1.1e-12 Score=88.09 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhhc---cCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHh
Q 046920 136 NEAKLAKILDVYEARL---SQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLA 209 (213)
Q Consensus 136 ~~~~~~~~l~~le~~L---~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~ 209 (213)
..+.+.+.++.+|.++ ++++|++|| +|+||+++++.+.+....+. +..|+|.+|++++.++|+|+++++
T Consensus 42 ~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~----~~~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 42 VQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGL----PLSPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHCCHHHHHHHh
Confidence 3444444555555544 567899999 99999999999998865432 223999999999999999999986
No 91
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.39 E-value=3.6e-13 Score=91.28 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhhccC-CceecCCCchHhHhhhhhHHHHHhcC-C---CccccCCCccHHHHHHHHhcChhHHHHH
Q 046920 134 EENEAKLAKILDVYEARLSQ-SKYLACDSFTLVDLHHLPNINLLLGT-P---VKKLFDARPHVSAWAADITSRPAWAKVL 208 (213)
Q Consensus 134 ~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aDi~l~~~l~~~~~~-~---~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (213)
++..+.+.+.+..||+.|++ ++||+||++|+|||++++.+.++... + .....+.+|+|.+|++++.+||+|+++.
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~ 108 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcC
Confidence 44567789999999999985 79999999999999999977666532 1 1112378999999999999999999976
Q ss_pred hh
Q 046920 209 AL 210 (213)
Q Consensus 209 ~~ 210 (213)
..
T Consensus 109 ~~ 110 (121)
T cd03201 109 AE 110 (121)
T ss_pred CC
Confidence 53
No 92
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.39 E-value=1.6e-12 Score=79.36 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=49.7
Q ss_pred CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhh
Q 046920 10 VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQE 78 (213)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~ 78 (213)
+.+++|.|++++|++.|++|+.+.. .. .. ..+|.|+||+|+++|.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~--~~-----~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR--AN-----AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec--CC-----cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 3578999999999999999998832 21 11 1478899999999999999999999999864
No 93
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.36 E-value=3e-12 Score=83.62 Aligned_cols=98 Identities=30% Similarity=0.419 Sum_probs=75.8
Q ss_pred HhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHH
Q 046920 97 LVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLL 176 (213)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~ 176 (213)
++|+.+....+.+........... .....++..+...+.+.+.++.||+.|++++|++|+++|+||+.+++.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFV----GPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARL 77 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeecc----CCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHH
Confidence 567777777776666555433221 1134466677888999999999999999999999999999999999999998
Q ss_pred hcCCCcc-ccCCCccHHHHHHHH
Q 046920 177 LGTPVKK-LFDARPHVSAWAADI 198 (213)
Q Consensus 177 ~~~~~~~-~~~~~p~L~~~~~~~ 198 (213)
....... ..+.+|+|.+|++++
T Consensus 78 ~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 78 DLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHhhhhhhhhccCccHHHHHHhC
Confidence 8765431 257899999999874
No 94
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=5e-11 Score=84.90 Aligned_cols=178 Identities=13% Similarity=0.178 Sum_probs=124.0
Q ss_pred ChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCCCCCCCCCCC
Q 046920 12 STATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDKGTQLTCPGK 91 (213)
Q Consensus 12 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~~~~l~p~~~ 91 (213)
..-|..|..+|+-.++||.++.-+- .+| ..|.|+||.|..+.++++|-..|..+..++.-.-+ +.+.+ .
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~N-------aef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~-s~lsE-~ 102 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRAN-------AEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLT-SWLSE-D 102 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCC-------ccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchh-hhhhh-H
Confidence 4468899999999999999876422 222 47999999999999999999999999999854100 11111 4
Q ss_pred chhhHHhHHHHHhhhcCcc------hhhhhh-------------------------hhhhccCCCCCCChHHHHHHHHHH
Q 046920 92 PIAPLLVWKEVEALQFDPP------SSKLNW-------------------------ELVYKPMFGMTTDPAAVEENEAKL 140 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~------~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 140 (213)
+++.++..++.....+... .....+ ....+.+.....+........+++
T Consensus 103 qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~v 182 (257)
T KOG3027|consen 103 QKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQV 182 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHH
Confidence 4555555554433221110 000000 001111111223444556788899
Q ss_pred HHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCcc-----ccCCCccHHHHHHHHhc
Q 046920 141 AKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK-----LFDARPHVSAWAADITS 200 (213)
Q Consensus 141 ~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~-----~~~~~p~L~~~~~~~~~ 200 (213)
.+..+.|+..|+.++||.|++||-+|..+|+.+..+....... .+.+|++|-++++|+.+
T Consensus 183 dkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 183 DKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988875443 55789999999999986
No 95
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.31 E-value=8.1e-12 Score=85.15 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcC
Q 046920 133 VEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSR 201 (213)
Q Consensus 133 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~ 201 (213)
.+...+.+.+.++.+|+.|++++|++||++|+||+++++.+.+..........+.+|+|++|+++|.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhcC
Confidence 356778899999999999999999999999999999999999988753333457899999999999763
No 96
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.30 E-value=3.6e-12 Score=84.20 Aligned_cols=101 Identities=21% Similarity=0.162 Sum_probs=73.7
Q ss_pred chhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC--CceecCCCchHhHhhh
Q 046920 92 PIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ--SKYLACDSFTLVDLHH 169 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l 169 (213)
++++++++++...+......... +. ..+....+...+...+.+.+.++.||+.|++ ++|++|+++|+||+++
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l 75 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYF-YE-----KDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVV 75 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-hc-----CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHH
Confidence 46788888887655443333322 11 0011123556677788899999999999987 8999999999999999
Q ss_pred hhHHHHHhcCCCccccCCCccHHHHHHHH
Q 046920 170 LPNINLLLGTPVKKLFDARPHVSAWAADI 198 (213)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~p~L~~~~~~~ 198 (213)
++.+.++...........+|+|.+|++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 76 FDVLDYLLYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHhhCchhhHHhChhHHHHHHhC
Confidence 99999987664321267899999999874
No 97
>PRK10638 glutaredoxin 3; Provisional
Probab=99.30 E-value=1.6e-11 Score=77.69 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=64.3
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHh
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQ 77 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~ 77 (213)
|+++++|+.+.||+|.+++.+|..+|++|+.+.++... ...+++...++..++|++..++..|.+...+..+-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 88899999999999999999999999999999886432 2346778889999999999999999998877766443
No 98
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.26 E-value=3e-11 Score=75.61 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=61.9
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
+++||+.++||+|.+++.+|...|++|+.+.++-. ....++...++..++|++..+|..|.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 58999999999999999999999999999887643 223456667788999999999999999999999984
No 99
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.25 E-value=2.4e-11 Score=77.76 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCc-----cccCCCccHHHHHHHHh
Q 046920 134 EENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVK-----KLFDARPHVSAWAADIT 199 (213)
Q Consensus 134 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~-----~~~~~~p~L~~~~~~~~ 199 (213)
....+.+.+.++.+|+.|++++|++|+++|+|||++++.+.++...... ...+.+|+|++|++++.
T Consensus 18 ~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 18 REIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 4667889999999999999999999999999999999999888753211 13467999999999874
No 100
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.25 E-value=1.1e-11 Score=81.11 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCc--eecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhc
Q 046920 132 AVEENEAKLAKILDVYEARLSQSK--YLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITS 200 (213)
Q Consensus 132 ~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (213)
..+...+.+.+.+..+|+.|++++ ||+|++||+||+++++.+..+... .. .+.+|+|.+|++||++
T Consensus 32 ~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~-~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 32 SGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA-DF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC-HH--TTTCHHHHHHHHHHHT
T ss_pred hHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc-cc--ccccHHHHHHHHhhcC
Confidence 456778889999999999999877 999999999999999999877744 21 1589999999999974
No 101
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=9.5e-10 Score=83.50 Aligned_cols=178 Identities=15% Similarity=0.181 Sum_probs=123.6
Q ss_pred CChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC-EEeeehHHHHHHHHhhCCCCCCCCCCC
Q 046920 11 FSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD-QKLFESRAITQYIAQEFPDKGTQLTCP 89 (213)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~-~~i~eS~~I~~yL~~~~~~~~~~l~p~ 89 (213)
.++-|..+.+++++.+-|.+++..+- ++. .|.|++|+|+.++ ..+++-.-|..+|.+...+- .+-..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-------~~~---s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky--~~d~d 83 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-------PWR---SPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKY--NLDAD 83 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-------CCC---CCCCCCCeEEecCCceeccHHHHHHHHHHhcccC--CcCcc
Confidence 38999999999999996655544322 222 6889999999887 99999999999999953311 12222
Q ss_pred C--CchhhHHhHHHHHhhhcCcchhhhhhh----------hhhccC--------C--------------CCCCChHHHHH
Q 046920 90 G--KPIAPLLVWKEVEALQFDPPSSKLNWE----------LVYKPM--------F--------------GMTTDPAAVEE 135 (213)
Q Consensus 90 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--------~--------------~~~~~~~~~~~ 135 (213)
. .+.+.+..|+++....+.+.....++- .++... . ..+...+...+
T Consensus 84 l~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~ 163 (313)
T KOG3028|consen 84 LSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQ 163 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHH
Confidence 2 667888888888776655554332221 010000 0 00112223455
Q ss_pred HHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCcc-----ccCCCccHHHHHHHHhc
Q 046920 136 NEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK-----LFDARPHVSAWAADITS 200 (213)
Q Consensus 136 ~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~-----~~~~~p~L~~~~~~~~~ 200 (213)
......+++..|++.|++++||+||+||--|+.++..+..+....... -...++||.+|++++.+
T Consensus 164 i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 164 IYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 667788999999999999999999999999999999999966553332 12338999999999875
No 102
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=99.17 E-value=6.7e-11 Score=81.61 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhc-cCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhc
Q 046920 137 EAKLAKILDVYEARL-SQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITS 200 (213)
Q Consensus 137 ~~~~~~~l~~le~~L-~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (213)
.+.+...++.+-+.+ ++++|++|++||+||+++++++..+........+..+|+|.+|+++|.+
T Consensus 81 r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 81 REWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHH
Confidence 444444444443444 4578999999999999999999999887554356789999999999976
No 103
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.15 E-value=5e-11 Score=81.37 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCc-----cccCCCccHHHHHHHHh
Q 046920 132 AVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVK-----KLFDARPHVSAWAADIT 199 (213)
Q Consensus 132 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~-----~~~~~~p~L~~~~~~~~ 199 (213)
..++....+.+.++.|++.|++++||+||+||.+|+++++.+..+...... .....+|+|.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 446778889999999999999999999999999999999999888754111 13678999999999974
No 104
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.14 E-value=3.8e-10 Score=69.30 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=60.6
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
+++||+.++||+|.+++-+|...|++|+.+.++... ....+.......++|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 589999999999999999999999999999886432 22345555677899999999999999999999984
No 105
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.14 E-value=3.5e-10 Score=69.40 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhh
Q 046920 11 FSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQE 78 (213)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~ 78 (213)
.||+|.++.+.|+..|++|+++...- + ...|.|++|+|+++++.|.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-------~---~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-------P---WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-------C---CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 48999999999999999998874321 1 1268999999999999999999999999875
No 106
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=99.10 E-value=2.7e-10 Score=78.82 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCc-----cccCCCccHHHHHHHHhc
Q 046920 130 PAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVK-----KLFDARPHVSAWAADITS 200 (213)
Q Consensus 130 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~-----~~~~~~p~L~~~~~~~~~ 200 (213)
....++..+.+.+.++.|++.|++++||+||+||.+|+++++.+..+...... .....+|+|.+|++||.+
T Consensus 59 ~~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 59 TEVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 34567778888999999999999999999999999999999998887643222 135789999999999975
No 107
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.08 E-value=4.2e-10 Score=73.45 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCC-CccccCCCccHHHHHHHH
Q 046920 126 MTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTP-VKKLFDARPHVSAWAADI 198 (213)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~-~~~~~~~~p~L~~~~~~~ 198 (213)
...+++..+.....+.+.++.+|++|++++| +++|+|||++++.+.+..... .....+.+|+|.+|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 28 EKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 4566678888999999999999999998888 899999999999998887532 222357899999999975
No 108
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=99.05 E-value=1.8e-09 Score=70.26 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=77.5
Q ss_pred CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC-CceecCCCchHhHhhh
Q 046920 91 KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ-SKYLACDSFTLVDLHH 169 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aDi~l 169 (213)
.+|++.++.-+|..+.+.+.....-.+..+.. .......+.....+.+.+...+.+|.+ ++||+|+ .|+||..+
T Consensus 3 ~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~----~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dl 77 (117)
T PF14834_consen 3 QERARARQVQAWLRSDFMALRQERPTNVVFRG----ARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADL 77 (117)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHS-THHHHS------------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHhhCChhhhhcC----CCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHH
Confidence 46889999999999988876554433322222 222334456667778888889999986 7899997 99999999
Q ss_pred hhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHHHHHhh
Q 046920 170 LPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLAL 210 (213)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (213)
++++.++...+. +..+++..|.++.-++|++++++..
T Consensus 78 A~ml~Rl~~~gd----~vP~~l~~Ya~~qwqrpsVQ~Wla~ 114 (117)
T PF14834_consen 78 ALMLNRLVTYGD----PVPERLADYAERQWQRPSVQRWLAL 114 (117)
T ss_dssp HHHHHHHHTTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCCHHHHHHHHHHHCCHHHHHHHHH
Confidence 999999998875 4457899999999999999999875
No 109
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.98 E-value=2.4e-09 Score=65.87 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=58.1
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQ 73 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~ 73 (213)
.++||+.+.||+|++++.+|..+||+|+.+.++.. ....+++.+.++.+++|++..+|..|.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 47999999999999999999999999999988643 2345678888999999999999988877665543
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.89 E-value=8.2e-09 Score=63.35 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=56.9
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEe--eehHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKL--FESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i--~eS~~I~~yL 75 (213)
+++||+.+.||+|++++.+|...|++|..+.++-. ....+++.+.++.+.+|+++.++..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999999988777532 12234567788999999999998666 6666666654
No 111
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.88 E-value=9.5e-09 Score=64.37 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=48.4
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEee
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLF 66 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~ 66 (213)
+++||+.++||+|.+++.+|..+||+|+.+.++-.. . ..+....++..+||+++.+|..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~--~-~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP--E-AAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH--H-HHHHHHHcCCCCcCEEEECCEEEe
Confidence 489999999999999999999999999999886431 1 122233468899999999985553
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.86 E-value=1.4e-08 Score=61.89 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=59.1
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQY 74 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~y 74 (213)
++++|+.+.||+|++++.+|..+|++|+.+.++... ....++...++..++|++..++..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~--~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG--ELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 378999999999999999999999999988775432 2345677789999999999999999999887653
No 113
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.2e-08 Score=62.51 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=56.9
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhh-hcCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFL-SLNPFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
++++|+.++||||.++.-+|..+|++|+.+.++..... ...++. ..++..+||++..++..+.......++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~-~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPE-EAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHH-HHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence 48999999999999999999999999999998776431 223444 45589999999999977766555544443
No 114
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.81 E-value=1.6e-08 Score=61.88 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=52.5
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeee
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFE 67 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~e 67 (213)
++++|+.+.||+|.+++.+|..+|++|..+.++.. ....+++...||.+++|++++++..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 37899999999999999999999999998887653 2334567788999999999999866644
No 115
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.79 E-value=3e-08 Score=61.24 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=57.0
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCC-CCCeEEeCCEEeeehHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFG-QVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g-~vP~l~~~~~~i~eS~~I~~yL 75 (213)
+++||+.+.||+|.+++-+|+.+|++|+.+.++.. .....++....... ++|++..++..+.+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 37899999999999999999999999999988643 12223444444544 8999999999999998888764
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.68 E-value=1e-07 Score=59.47 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=59.3
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHh
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQ 77 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~ 77 (213)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ....++.......++|++..++..+.+...+.+.-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887532 2234566667788999999999999888887776554
No 117
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.67 E-value=1.7e-07 Score=59.32 Aligned_cols=76 Identities=11% Similarity=0.129 Sum_probs=61.4
Q ss_pred ceEEeccCCChhHHHHHHHHHh-----cCCCceEEeccCCCCCCCchhhhhcCC--CCCCCeEEeCCEEeeehHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYE-----KELEYELVPVDMKAGEHKKEAFLSLNP--FGQVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p--~g~vP~l~~~~~~i~eS~~I~~yL 75 (213)
.+++|+.++||+|.+++-+|.. .|++|+.+.++... ...+++..... ..++|++..+|..+.+...|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 4899999999999999999999 89999998886431 11234444333 368999999999999999999999
Q ss_pred HhhCC
Q 046920 76 AQEFP 80 (213)
Q Consensus 76 ~~~~~ 80 (213)
...++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 88765
No 118
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.64 E-value=1.2e-07 Score=58.15 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=44.3
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD 62 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~ 62 (213)
++||+.+.||+|++++-+|..+|++|+.+.++-.. ....++ ...+..+||+++.+|
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~--~~~~~~-~~~g~~~vP~v~~~g 56 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP--EAIDYV-KAQGFRQVPVIVADG 56 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCcccCEEEECC
Confidence 58999999999999999999999999999886431 122233 345677999999966
No 119
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.57 E-value=1.9e-07 Score=57.76 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=49.9
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcC-CCCCCCeEEeCC-EEeeeh
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLN-PFGQVPVLEHGD-QKLFES 68 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~g~vP~l~~~~-~~i~eS 68 (213)
+++||+.+.||+|++++.+|...|++|+.+.++-. ......+.+.| +..++|+++.++ ..+.++
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED--EGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC--HhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 37899999999999999999999999998776532 23345556676 899999997654 666544
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.56 E-value=1.2e-07 Score=55.79 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=49.7
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEe
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKL 65 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i 65 (213)
+++|+.++||+|.+++-+|...|++|+.+.++... ...+++.+.+...++|++..+|..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999987652 2344555666788999999988654
No 121
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.55 E-value=5.5e-07 Score=58.65 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=57.5
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCC-CCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGE-HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQY 74 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~y 74 (213)
++++|+.++||||.+++-+|...|++|+.+.++..... .....+...+...++|.+..+|..|.+...+...
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 58999999999999999999999999999999754211 1112344556788999999999999888777664
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.54 E-value=5.2e-07 Score=56.59 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=61.3
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCC-CCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHh
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGE-HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQ 77 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~ 77 (213)
++++|+.+.||+|.+++-+|...+++|+...++..... .....+.+.+...++|++..++..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 37899999999999999999999999999998776321 1122444666778999999999999999999888765
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.52 E-value=6.5e-07 Score=59.16 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=58.0
Q ss_pred cceEEeccCCChhHHHHHHHHHhcCC---CceEEeccCCC-CCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHH
Q 046920 2 AGIKVHGSVFSTATQRVFASLYEKEL---EYELVPVDMKA-GEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQ 73 (213)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~ 73 (213)
+++++|+.++||||.+++-+|...|+ +|+.+.++-.. +.....++.+.+...+||.+..+|..|.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 36899999999999999999999999 78888887421 11223566677778899999999988888877665
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.51 E-value=7.6e-07 Score=56.48 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=58.1
Q ss_pred eEEeccCCChhHHHHHHHHHhcC-----CCceEEeccCCCCCCCchhhhhcCC--CCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLYEKE-----LEYELVPVDMKAGEHKKEAFLSLNP--FGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p--~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
+++|+.++||+|.+++-+|..++ ++|+.+.++... ....++..... ..+||++..++..+.++..|.+++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~--~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG--ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 567776665321 11234444333 3689999999999999999999998
Q ss_pred hhCC
Q 046920 77 QEFP 80 (213)
Q Consensus 77 ~~~~ 80 (213)
+.++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8765
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.26 E-value=5.5e-06 Score=53.74 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=54.8
Q ss_pred ceEEecc-----CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHH
Q 046920 3 GIKVHGS-----VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL 75 (213)
++.+|.- +.||||.+++-+|..+|++|+.+.++-. .....++...+...++|.+..+|..|.+...+.+..
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 4678854 7899999999999999999998877422 122345556677789999999999888877776643
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.26 E-value=7.3e-06 Score=51.49 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=58.5
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCC--ceEEeccCCCCC-CCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHh
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELE--YELVPVDMKAGE-HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQ 77 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~~~~~-~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~ 77 (213)
+++|+-+.||+|.+++-+|...+++ |+...++..+.. ...+.+.......++|.+..++..+.++..+.+...+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 888888765321 1112345566778999999999999999888877654
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.13 E-value=1.6e-05 Score=50.85 Aligned_cols=71 Identities=7% Similarity=0.073 Sum_probs=55.8
Q ss_pred ceEEecc-----CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHH
Q 046920 3 GIKVHGS-----VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL 75 (213)
++.+|.. +.||||.+++-+|...|++|+.+.+... .....++.+.+...++|.+..++..|.+...+.+.-
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 3677755 5899999999999999999999988532 123345556677789999999999898888877743
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.05 E-value=3.3e-05 Score=47.00 Aligned_cols=55 Identities=25% Similarity=0.377 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHhcCCC---ceEEeccCCCCCCCchhhhhcCCCCCCCeEEe-CCEEeeehHHHHHHH
Q 046920 11 FSTATQRVFASLYEKELE---YELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH-GDQKLFESRAITQYI 75 (213)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~-~~~~i~eS~~I~~yL 75 (213)
.+|-|..+.++|++.+.+ |+++..+- +. ..|.|++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-------~~---~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-------PW---LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-------CC---cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 589999999999999999 66665421 22 379999999999 779999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.98 E-value=3.2e-05 Score=63.31 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=55.6
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhh---------hcCCCCCCCeEEeCCEEeeehHHH
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFL---------SLNPFGQVPVLEHGDQKLFESRAI 71 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~---------~~~p~g~vP~l~~~~~~i~eS~~I 71 (213)
|..+++|+-++||+|.++.-+|...||+|+.+.++-. . ...++. ......+||++..+|..|.+-...
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~--~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD--V-KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC--h-hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 7889999999999999999999999999999988722 1 111221 124567899999999888888777
Q ss_pred HH
Q 046920 72 TQ 73 (213)
Q Consensus 72 ~~ 73 (213)
..
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 66
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.81 E-value=9.7e-05 Score=51.49 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=55.0
Q ss_pred eEEeccC------CChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCC----CCCCCeEEeCCEEeeehHHHHH
Q 046920 4 IKVHGSV------FSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNP----FGQVPVLEHGDQKLFESRAITQ 73 (213)
Q Consensus 4 ~~Ly~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~g~vP~l~~~~~~i~eS~~I~~ 73 (213)
++||..+ ++|+|.+++-+|+.++|+|+.+.|++.. ...+++.+... ..++|.+..++..|.+...+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 6889888 8999999999999999999999887642 22345554433 3789999999999988877776
Q ss_pred H
Q 046920 74 Y 74 (213)
Q Consensus 74 y 74 (213)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 3
No 131
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=4.7e-05 Score=62.48 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=81.7
Q ss_pred CEEeeehHHHHHHHHhhCCCCCCCCCCCCCchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHH
Q 046920 62 DQKLFESRAITQYIAQEFPDKGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLA 141 (213)
Q Consensus 62 ~~~i~eS~~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (213)
+..+.++..+..|.++... ..+.+++.+.++.+++.|+++... .....+.
T Consensus 45 ~~~l~~a~~~~~~~~~~~~-~~~~lf~~~~d~~~vd~w~~~s~~-----------------------------~~~~~~s 94 (712)
T KOG1147|consen 45 GRKLNGATEPVVYSAALAK-ADPKLFGNNIDRSQVDHWVSFSST-----------------------------FSFDEIS 94 (712)
T ss_pred cccccCCccchhhhhhhcc-cCHhHcCCcccHHHHHHHHHHhhh-----------------------------cchHHHH
Confidence 3556666667777664332 234678876889999999986643 1244566
Q ss_pred HHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCc-cccCCCccHHHHHHHHhcChhHHHHH
Q 046920 142 KILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVK-KLFDARPHVSAWAADITSRPAWAKVL 208 (213)
Q Consensus 142 ~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~-~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (213)
..+..++..|.-..||+|.++|.||+++|+.++.-..+... .....+-++.+|+.-....++.+.+.
T Consensus 95 ~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 95 SSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred HHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 67777888888789999999999999999999875443222 12356788999999555555555555
No 132
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.74 E-value=0.00042 Score=46.86 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChh
Q 046920 135 ENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPA 203 (213)
Q Consensus 135 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~ 203 (213)
+..+++...+..++.++..... ++..+|+.||.+|+.|+.+..+.. +.-.|++++|+++|.+.-.
T Consensus 60 ~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkg---i~~P~~V~~Y~~~~s~~t~ 124 (128)
T cd03199 60 QYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKG---LVFPPKVKAYLERMSALTK 124 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcC---CCCCHHHHHHHHHHHHHhC
Confidence 5667788888888888854344 455799999999999999998765 4556899999999987643
No 133
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.70 E-value=0.00014 Score=49.50 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhH
Q 046920 134 EENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAW 204 (213)
Q Consensus 134 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (213)
.+...++...|..+|.++.......| ++|+.||.+|+.|+.+-.+.. +.-.|++++|+++|.+.-.+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkg---i~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKG---IQWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTT---S---HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccC---CcCCHHHHHHHHHHHHHcCC
Confidence 45677888888999999986555555 899999999999999998865 45568999999999876543
No 134
>PRK10824 glutaredoxin-4; Provisional
Probab=97.62 E-value=0.00035 Score=46.51 Aligned_cols=71 Identities=7% Similarity=-0.006 Sum_probs=55.5
Q ss_pred ceEEecc-----CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHH
Q 046920 3 GIKVHGS-----VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL 75 (213)
++.+|.- +.||||.++.-+|...|++|..+.++-. ......+...+-..+||-+..+|..|-++..+....
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 3566765 4899999999999999999998877532 123345666777889999999999998887777643
No 135
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00067 Score=44.30 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=58.1
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCC-CCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGE-HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL 75 (213)
++.+|+-.+||+|.++.-+|.-.|+++.++++|-.+.. .....+....-..+||.+..++..|-.+..+..+=
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 47888889999999999999999999999999876432 22233445566679999999998888888777653
No 136
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.33 E-value=0.00098 Score=39.79 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=41.4
Q ss_pred ceEEeccCCChhHHHHHHHHHhc-----CCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEee
Q 046920 3 GIKVHGSVFSTATQRVFASLYEK-----ELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLF 66 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~ 66 (213)
++++|+.+.||+|.++.-++... ++++..+.++- .++.........+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999998875 45555554421 234444455567999999986554
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=97.30 E-value=0.0013 Score=48.59 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=53.8
Q ss_pred ceEEecc-----CCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHH
Q 046920 3 GIKVHGS-----VFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQY 74 (213)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~y 74 (213)
++.||.- +.||||.++.-+|...|++|+...+.-. ......+...+...++|.+..+|..|.+...+.+.
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 4666744 5799999999999999999998777522 22334555667778999999999988887777663
No 138
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.10 E-value=0.00089 Score=45.91 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=30.9
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
|+++|+.+.|++|++++-.|...||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 389999999999999999999999999999874
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.09 E-value=0.00077 Score=44.82 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=30.6
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDM 36 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (213)
++||+.+.||+|++++-.|..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999998754
No 140
>PRK10026 arsenate reductase; Provisional
Probab=97.07 E-value=0.00099 Score=46.04 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=33.0
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
|++|++|+.+.|.-|++++-.|...|++|+.+.+-
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 88899999999999999999999999999998864
No 141
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.01 E-value=0.0012 Score=44.22 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=30.4
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 89999999999999999999999999998874
No 142
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.00 E-value=0.0012 Score=43.47 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.5
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDM 36 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (213)
+++|+.+.||+|++++-+|..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 579999999999999999999999999998853
No 143
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.73 E-value=0.0028 Score=43.49 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=31.4
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDM 36 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (213)
|+++|+.+.|+.|++++-.|...|++|+.+.+.-
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 3899999999999999999999999999998753
No 144
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.70 E-value=0.0027 Score=43.48 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=31.3
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDM 36 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (213)
|+++|+.+.|+.|+++.-.|...|++|+.+.+.-
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 3899999999999999999999999999998753
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.61 E-value=0.0034 Score=42.11 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=29.8
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
+++|+.+.||+|++++-+|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 57999999999999999999999999988874
No 146
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.016 Score=34.87 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=48.1
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCC--------CCCchhhhh--cCCCCCCCeEEeCC-EEee
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAG--------EHKKEAFLS--LNPFGQVPVLEHGD-QKLF 66 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~--------~~~~~~~~~--~~p~g~vP~l~~~~-~~i~ 66 (213)
|++.+||+...||-|--..-.|+-.+++|+.+++.-.-. -+..++|-. .|-.-.+|+|..+| .++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 788899999999999999999999999999999853210 012234432 34455699998776 5554
No 147
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.30 E-value=0.0068 Score=39.81 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=30.4
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDM 36 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (213)
|++|+.+.|+.|++++-.|...|++|+.+.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 589999999999999999999999999998753
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.26 E-value=0.0075 Score=40.17 Aligned_cols=32 Identities=19% Similarity=-0.058 Sum_probs=30.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
++||+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999998874
No 149
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.00 E-value=0.03 Score=35.77 Aligned_cols=68 Identities=25% Similarity=0.235 Sum_probs=49.9
Q ss_pred eEEeccCCCh------hHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCC----CCCCCeEEeCCEEeeehHHHHH
Q 046920 4 IKVHGSVFST------ATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNP----FGQVPVLEHGDQKLFESRAITQ 73 (213)
Q Consensus 4 ~~Ly~~~~s~------~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~g~vP~l~~~~~~i~eS~~I~~ 73 (213)
++||....|+ .|++|+.+|.-+||+|+.+.|+..+ ....++.+..+ ..++|-+..+|..|-+.-.+.+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 5677665432 4778899999999999999998642 33445555433 4789999999999988765554
No 150
>PRK10853 putative reductase; Provisional
Probab=95.95 E-value=0.014 Score=39.21 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=30.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999988764
No 151
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.91 E-value=0.073 Score=32.60 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=40.1
Q ss_pred eEEeccCCChhHHHH----HHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEe
Q 046920 4 IKVHGSVFSTATQRV----FASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKL 65 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i 65 (213)
+.+|. ++||.|..+ .-++++.|++++...++- .++ ....-...+|++..+|..+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~-a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNE-ILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHH-HHHcCCCcCCEEEECCEEE
Confidence 78887 889999998 668888999988888761 122 2234567899999988443
No 152
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.017 Score=38.63 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.8
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
+|++|+.+.|.-|++++-.|+..||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 589999999999999999999999999988764
No 153
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.75 E-value=0.059 Score=33.49 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=40.4
Q ss_pred ceEEeccCCChhHHHHHHHHHhcC--CCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKE--LEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD 62 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~ 62 (213)
.++||+-++|+-|..+.-.|+... .+++...+|+.+ ++++....- -.+|+|..++
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHhc-CCCCEEEEcC
Confidence 378999999999999999999654 467777777763 344444333 4899999887
No 154
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.043 Score=35.13 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=47.1
Q ss_pred cCCChhHHHHHHHHHhcC-CCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHH
Q 046920 9 SVFSTATQRVFASLYEKE-LEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQY 74 (213)
Q Consensus 9 ~~~s~~~~~v~~~l~~~g-i~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~y 74 (213)
+|.|+|+.++--+|...| ++|..+.| ...+......+..+-..+.|-|-.+++.|-+|..|.+-
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnV--L~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDV--LQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEee--ccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHH
Confidence 467999999999999999 56655554 32223334444557788999999999999888766554
No 155
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.49 E-value=0.028 Score=38.20 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=30.7
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
.++||+.+.|.-|++++-.|...|++|+.+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 479999999999999999999999999999864
No 156
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.48 E-value=0.063 Score=34.07 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=40.1
Q ss_pred ceEEeccCCChhHHHHHHHHHhc-----CCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEe
Q 046920 3 GIKVHGSVFSTATQRVFASLYEK-----ELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKL 65 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i 65 (213)
.+.+|..++|++|..+.-++... ++.+..+.++ ..++......-..+|+++.+|..+
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~ 76 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELF 76 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEE
Confidence 47889899999999988777665 4555555443 234555566677899999988443
No 157
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.21 E-value=0.2 Score=30.77 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=40.1
Q ss_pred ceEEeccCCChhHHHHHHHHHh----cCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCE
Q 046920 3 GIKVHGSVFSTATQRVFASLYE----KELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQ 63 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~ 63 (213)
++++|+.+.||+|..+.-.++. .+..+....++... .++.........+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988888753 34445666666542 334445556678999998773
No 158
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.90 E-value=0.047 Score=36.42 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=29.6
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
+++|+.+.|.-|++++-.|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988764
No 159
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.87 E-value=0.049 Score=36.19 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=29.5
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988763
No 160
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.85 E-value=0.23 Score=30.36 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=37.0
Q ss_pred eEEeccCCChhHHHHHH----HHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeee
Q 046920 4 IKVHGSVFSTATQRVFA----SLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFE 67 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~e 67 (213)
++++ .++||+|.++.- ++...|+.++...+ . ..++. .......+|+++.||...+.
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~----~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI--E----DFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET--T----THHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--c----CHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 6775 455999996665 55566777766654 2 23444 55778899999999955443
No 161
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=94.81 E-value=0.1 Score=37.34 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhccCC---ceecCCC-chHhHhhhhhHHHHHhcC
Q 046920 139 KLAKILDVYEARLSQS---KYLACDS-FTLVDLHHLPNINLLLGT 179 (213)
Q Consensus 139 ~~~~~l~~le~~L~~~---~~l~G~~-~t~aDi~l~~~l~~~~~~ 179 (213)
...+.+..|++.|++. +|++|+. +|-+||.+++.+..+..-
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~p 156 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLVP 156 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 3678889999999988 9999988 999999999999887643
No 162
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.39 E-value=0.11 Score=29.33 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=37.1
Q ss_pred eEEeccCCChhHHHHHHHHH-----hcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC
Q 046920 4 IKVHGSVFSTATQRVFASLY-----EKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD 62 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~ 62 (213)
+.+|+...|++|.+++-.+. ..++.+..+.++-.. ........++...+|+++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccccEEEEEe
Confidence 35677888999999999999 455666555554331 111112457888999987654
No 163
>PHA02125 thioredoxin-like protein
Probab=93.79 E-value=0.32 Score=29.58 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=38.7
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHG 61 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~ 61 (213)
|+.+|+.+.|+.|.++.-.|+ ++.++...++.. ..++....+-...+|++..+
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~~g 53 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTD----EGVELTAKHHIRSLPTLVNT 53 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHH--HHhheEEeeeCC----CCHHHHHHcCCceeCeEECC
Confidence 378899999999999888776 456666666643 23566666667789999843
No 164
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.67 E-value=0.66 Score=30.05 Aligned_cols=69 Identities=26% Similarity=0.236 Sum_probs=40.2
Q ss_pred CcceEEeccCCCh------hHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcC---------CCCCCCeEEeCCEEe
Q 046920 1 MAGIKVHGSVFST------ATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLN---------PFGQVPVLEHGDQKL 65 (213)
Q Consensus 1 M~~~~Ly~~~~s~------~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------p~g~vP~l~~~~~~i 65 (213)
|. |++|....|+ ..+++..+|.-++|+|+.+.+... +....+..... +....|-+..+|..+
T Consensus 1 m~-I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MV-IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYC 77 (99)
T ss_dssp -S-EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEE
T ss_pred CE-EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEE
Confidence 56 8888876543 467899999999999998888663 23334444333 233457888888766
Q ss_pred eehHHHH
Q 046920 66 FESRAIT 72 (213)
Q Consensus 66 ~eS~~I~ 72 (213)
.+--.+.
T Consensus 78 Gdye~f~ 84 (99)
T PF04908_consen 78 GDYEDFE 84 (99)
T ss_dssp EEHHHHH
T ss_pred eeHHHHH
Confidence 6554443
No 165
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.67 E-value=0.59 Score=30.73 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=46.2
Q ss_pred CChhHHHHHHHHHhcCC---CceEEeccCCCCCCCchhhhhc--CCCCCCCeEEeCC--------------EEeeehHHH
Q 046920 11 FSTATQRVFASLYEKEL---EYELVPVDMKAGEHKKEAFLSL--NPFGQVPVLEHGD--------------QKLFESRAI 71 (213)
Q Consensus 11 ~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~--~p~g~vP~l~~~~--------------~~i~eS~~I 71 (213)
.||.|-.+.=+|+..-- ..+++.|++. .......+. -.+..+|+|+.++ ..|.|+..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~---RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFP---RPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCC---CchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 37778777777665322 4566666665 334444443 2356799999753 389999999
Q ss_pred HHHHHhhCC
Q 046920 72 TQYIAQEFP 80 (213)
Q Consensus 72 ~~yL~~~~~ 80 (213)
++||.++|+
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999998
No 166
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.97 E-value=1.6 Score=37.56 Aligned_cols=56 Identities=21% Similarity=0.155 Sum_probs=40.4
Q ss_pred ceEEeccCCChhHHHHHH----HHHhc-CCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEE
Q 046920 3 GIKVHGSVFSTATQRVFA----SLYEK-ELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQK 64 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~ 64 (213)
.+++|..++||+|-.+.- +..+. +|..+.+.+.. .++.........||.++.++.+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~------~~~~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH------FPDLKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc------cHHHHHhCCceecCEEEECCEE
Confidence 378888888999977655 44454 67777766643 3566666778899999999843
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=87.78 E-value=0.71 Score=30.43 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=23.0
Q ss_pred eccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 7 HGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 7 y~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999988774
No 168
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=85.09 E-value=0.64 Score=31.09 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=13.8
Q ss_pred CCCeEEeC--CEEeeehHHHHHHHHhhCC
Q 046920 54 QVPVLEHG--DQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 54 ~vP~l~~~--~~~i~eS~~I~~yL~~~~~ 80 (213)
.-|-|++. ++.++|+.||+|||.+-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 34788554 3999999999999999766
No 169
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.44 E-value=1.1 Score=38.13 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=46.7
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeee----hHHHHHHHHh
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFE----SRAITQYIAQ 77 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~e----S~~I~~yL~~ 77 (213)
.+++|..+.||||-.+.-+++..-+....+..++.+. ...+++....-...||.+..++..+.+ -..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG-ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc-hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 3789999999999988777766555322222222211 345677777777899999998844433 2344455544
No 170
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=84.31 E-value=1 Score=38.42 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=43.0
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeee
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFE 67 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~e 67 (213)
.+++|..+.||||-.+.-+++..-+....+..++.+. ...+++........||.+..++..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG-ALFQDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc-hhCHHHHHhcCCcccCEEEECCcEEEe
Confidence 3788999999999988877766665433333333221 345666666777799999998844443
No 171
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=79.18 E-value=5.5 Score=27.44 Aligned_cols=75 Identities=12% Similarity=-0.001 Sum_probs=51.3
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEe---eehHHHHHHHHhhC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKL---FESRAITQYIAQEF 79 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i---~eS~~I~~yL~~~~ 79 (213)
++..|..+.|.+|..=.=.|+.+|+....+..+-.. ..+..+.-..-...+=+.+.+|..| .-..+|.+.|++..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~--alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFL--ALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHH--HHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 588999999999998888999888887776653220 1111111112245667888888544 55789999999986
No 172
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=78.81 E-value=6.2 Score=25.29 Aligned_cols=55 Identities=11% Similarity=-0.010 Sum_probs=32.2
Q ss_pred eEEeccCCChhHHHHHHHH--------HhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEE
Q 046920 4 IKVHGSVFSTATQRVFASL--------YEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLE 59 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~ 59 (213)
+..|+.+.|++|++..-.+ .+.+ .+....++....+...+++........+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4567778899999876433 2232 45555666543222234555555566788775
No 173
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=76.96 E-value=2.1 Score=32.01 Aligned_cols=59 Identities=8% Similarity=0.133 Sum_probs=46.7
Q ss_pred HHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHhcChhHH
Q 046920 141 AKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWA 205 (213)
Q Consensus 141 ~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~ 205 (213)
...+..++..|.+++|.-|..++-+|+.+|..+.- .+....+++..+|+..+.+...+.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~------ep~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGV------EPQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhccc------CcchhhhhHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999987532 112456788899998887765554
No 174
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.17 E-value=8.7 Score=28.76 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=48.7
Q ss_pred cCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHH
Q 046920 9 SVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYI 75 (213)
Q Consensus 9 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL 75 (213)
.+-|+|++++--+|...|++|....|- .++......+..+-..+.|-|-.+|+.+-++..|..-+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL--~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVL--TDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEecc--CCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 366999999999999999998877663 22233444556677899999999998887776555433
No 175
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=72.69 E-value=18 Score=21.77 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=33.1
Q ss_pred eEEeccCCChhHHHHHHHHHh-----cCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEe
Q 046920 4 IKVHGSVFSTATQRVFASLYE-----KELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH 60 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~ 60 (213)
+..++.+.|+.|....-.+.. .++.+-.+..+- .+.+........+|+++.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE------NPELAEEYGVRSIPTFLF 69 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC------ChhHHHhcCcccccEEEE
Confidence 566777889999998888877 555555444322 244444455567898754
No 176
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=69.74 E-value=30 Score=23.18 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=31.3
Q ss_pred eEEeccCCChhHHHHHHHH----HhcCCCceEEeccCCCCCCCc-----hhhhhcC----CCCCCCeEEe
Q 046920 4 IKVHGSVFSTATQRVFASL----YEKELEYELVPVDMKAGEHKK-----EAFLSLN----PFGQVPVLEH 60 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l----~~~gi~~~~~~v~~~~~~~~~-----~~~~~~~----p~g~vP~l~~ 60 (213)
+..|+.+.||+|+.+.=.| +..++++-.+.++........ .++.... ....+|+++.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~ 96 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVH 96 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEE
Confidence 4567789999999955444 334455555555532111111 1333332 3445999864
No 177
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=64.95 E-value=20 Score=23.60 Aligned_cols=53 Identities=13% Similarity=-0.045 Sum_probs=33.4
Q ss_pred eEEe-ccCCChhHHHHHHHHHhcCCCc---eEEeccCCCCCCCchhhhhcCCCCCCCeEEe
Q 046920 4 IKVH-GSVFSTATQRVFASLYEKELEY---ELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH 60 (213)
Q Consensus 4 ~~Ly-~~~~s~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~ 60 (213)
+.++ +-+.||+|+.++-++....-.+ +...++.. ..++.........+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEEE
Confidence 3444 4578999998887776544322 33344433 2456666667788999875
No 178
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=63.04 E-value=7.5 Score=22.47 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=16.9
Q ss_pred eEEecc----CCChhHHHHHHHHHh
Q 046920 4 IKVHGS----VFSTATQRVFASLYE 24 (213)
Q Consensus 4 ~~Ly~~----~~s~~~~~v~~~l~~ 24 (213)
++||.+ ..|.||+||-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 677766 458999999999875
No 179
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=61.56 E-value=20 Score=26.60 Aligned_cols=55 Identities=9% Similarity=-0.053 Sum_probs=35.9
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCC---ceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELE---YELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD 62 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~ 62 (213)
+.+|+.++||+|..+.-++...--. .....+|.. ..++.........+|+++..+
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEEec
Confidence 5668889999999888777754321 222334433 245555556677899998765
No 180
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=60.65 E-value=37 Score=22.13 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=41.6
Q ss_pred EeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCc-hhhhhcC---CCCCCCeEEeCCE-EeeehHHHHHHHHhh
Q 046920 6 VHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKK-EAFLSLN---PFGQVPVLEHGDQ-KLFESRAITQYIAQE 78 (213)
Q Consensus 6 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~-~~~~~~~---p~g~vP~l~~~~~-~i~eS~~I~~yL~~~ 78 (213)
|++...||+|.+..-.+.-....-....++..+..... ....... ....+-+ ..+|. +..++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 45677899999998888888764444444442111110 0111122 2223333 44554 999999999886664
No 181
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=55.40 E-value=1.2e+02 Score=25.24 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=76.1
Q ss_pred ccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHh-hCCCCCCCC
Q 046920 8 GSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQ-EFPDKGTQL 86 (213)
Q Consensus 8 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~-~~~~~~~~l 86 (213)
-+.+||..-|+.+..+-+.+.-.+-++ .|+.|+.++++. |-..-++.+.. ++-+.+...
T Consensus 185 fyTGsp~VgkIim~aAaKhLTPvtLEL-----------------GGKsP~~vd~~~---d~~ia~~RI~~gk~~N~GQtC 244 (477)
T KOG2456|consen 185 FYTGSPRVGKIIMAAAAKHLTPVTLEL-----------------GGKSPCYVDKNC---DLKIAARRIAWGKWMNSGQTC 244 (477)
T ss_pred EecCCchHHHHHHHHHHhcCCcEEEEc-----------------CCCCCeeecCCc---CHHHHHHHHHHHhhccCCCee
Confidence 356688899999999888875433322 467799998874 33334444433 222222223
Q ss_pred CCCC---CchhhHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHhhccC-CceecCCCc
Q 046920 87 TCPG---KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQ-SKYLACDSF 162 (213)
Q Consensus 87 ~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~ 162 (213)
...| .......+.++.+...+..+.+.- .++...-.+-.-.++++.+..+|++ ++-..|.+-
T Consensus 245 vapDYiL~~k~~~~kli~alk~~l~eFYG~n--------------~~eS~d~sRiIn~~hf~Rl~~ll~~~~kv~~Gg~~ 310 (477)
T KOG2456|consen 245 VAPDYILCSKSIQPKLIDALKSTLKEFYGEN--------------PKESKDLSRIINQRHFQRLSALLDETGKVAIGGES 310 (477)
T ss_pred ccCCeEEecHhhhHHHHHHHHHHHHHHhCCC--------------ccccccHHHHhhHHHHHHHHHHhcCCCceecCCcc
Confidence 3333 445555555554444333322211 1111122233335788889999988 777788778
Q ss_pred hHhHhhhhhHHH
Q 046920 163 TLVDLHHLPNIN 174 (213)
Q Consensus 163 t~aDi~l~~~l~ 174 (213)
.-+|....|.+.
T Consensus 311 d~~d~~I~PTIL 322 (477)
T KOG2456|consen 311 DESDRYIAPTIL 322 (477)
T ss_pred chhhcccCCeEE
Confidence 888887777654
No 182
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=54.77 E-value=49 Score=20.73 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=30.6
Q ss_pred eEEeccCCChhHHHHHHHHHh----cCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEE
Q 046920 4 IKVHGSVFSTATQRVFASLYE----KELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLE 59 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~ 59 (213)
+.+|+.+.|+.|....-.+.. .+-.+....++.. ..+++....-...+|++.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~ 72 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQ 72 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEE
Confidence 466777899999988766644 1112344445543 234444444456788775
No 183
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=51.27 E-value=22 Score=26.21 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=25.3
Q ss_pred cceEEeccCCChhHHHH----HHHHHhcCCCceEEeccC
Q 046920 2 AGIKVHGSVFSTATQRV----FASLYEKELEYELVPVDM 36 (213)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~ 36 (213)
|.|.+|+...||||... +-++...+++.+.+.+.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 56899999999999764 444556677767666644
No 184
>PRK13947 shikimate kinase; Provisional
Probab=51.06 E-value=22 Score=25.07 Aligned_cols=31 Identities=13% Similarity=-0.070 Sum_probs=28.0
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceE
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYEL 31 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~ 31 (213)
|..|.|.|.++|+-+...+.+.+.+|++|-.
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7889999999999999999999999998743
No 185
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=46.76 E-value=39 Score=20.76 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=30.1
Q ss_pred CceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHHh
Q 046920 154 SKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADIT 199 (213)
Q Consensus 154 ~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~ 199 (213)
-+|+. .+++ |+..|+++.++...+.....++--++..|++++.
T Consensus 34 ~ky~t--~l~~-DvL~~~ll~~L~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 34 LKYFT--DLGY-DVLTFCLLERLSNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred Hhhcc--hhhH-HHHHHHHHHHHhcccchhcCcCCCCHHHHHHHHh
Confidence 35652 2444 8999999999886544444455678999999875
No 186
>PRK13949 shikimate kinase; Provisional
Probab=45.80 E-value=31 Score=24.58 Aligned_cols=32 Identities=25% Similarity=0.034 Sum_probs=28.1
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEE
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELV 32 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~ 32 (213)
|..|.|+|.++|+.+.-.+.+.+..|++|-..
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 77799999999999999999999999876543
No 187
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.31 E-value=24 Score=21.63 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHhcCCCceEEecc
Q 046920 12 STATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 12 s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
-+|++|+.-.++..|++|+..+-.
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCC
Confidence 479999999999999999987643
No 188
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=45.14 E-value=24 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.1
Q ss_pred CCeEE-eCCEEeeehHHHHHHHHhhCC
Q 046920 55 VPVLE-HGDQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 55 vP~l~-~~~~~i~eS~~I~~yL~~~~~ 80 (213)
.|.+. .++.++++|..|+++.++.+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35554 466999999999999999876
No 189
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=44.48 E-value=89 Score=20.45 Aligned_cols=59 Identities=8% Similarity=-0.065 Sum_probs=35.4
Q ss_pred eEEeccCCChhHHHHHHHHHhcCC---CceEEeccCCCCCCCchhhhhcCCCCCCCeEEe--CCEEee
Q 046920 4 IKVHGSVFSTATQRVFASLYEKEL---EYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH--GDQKLF 66 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~--~~~~i~ 66 (213)
+..|+.+.|+-|+.+.-.+....- ......|+.. ..++..+...-..+|++.. +|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 345666889999888766644221 1244555544 2345556667788998863 555443
No 190
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=42.63 E-value=28 Score=25.38 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.1
Q ss_pred EeCCEEeeehHHHHHHHHhhCC
Q 046920 59 EHGDQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 59 ~~~~~~i~eS~~I~~yL~~~~~ 80 (213)
...|..|+||..|-+|+.++|+
T Consensus 152 k~ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 152 KYADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred HhCCEEEEcCHHHHHHHHHHcC
Confidence 4567999999999999999998
No 191
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=42.18 E-value=35 Score=26.17 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=16.2
Q ss_pred eEEeccCCChhHHHHHHHHH
Q 046920 4 IKVHGSVFSTATQRVFASLY 23 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~ 23 (213)
+.+|..+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 56778889999999977654
No 192
>PRK15371 effector protein YopJ; Provisional
Probab=42.05 E-value=1e+02 Score=24.25 Aligned_cols=64 Identities=11% Similarity=0.214 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCcc-ccCCCccHHHHHHHHh
Q 046920 135 ENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK-LFDARPHVSAWAADIT 199 (213)
Q Consensus 135 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~-~~~~~p~L~~~~~~~~ 199 (213)
...+++...+..||+.++++.|+ .+..+..|+-..+.+.......... .+..+-.-..+++.+.
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N~r~P~LNL~~f~s~~~f~~aik 87 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQANNKYPEMNLKLVTSPLDLSIEIK 87 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHhccCCCCCeeecCCHHHHHHHHH
Confidence 45677999999999999998888 4569999999999999988664433 3344445555555554
No 193
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=40.90 E-value=39 Score=25.57 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=17.7
Q ss_pred eEEeccCCChhHHHHHHHHHhc
Q 046920 4 IKVHGSVFSTATQRVFASLYEK 25 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~ 25 (213)
+.+|..+.||||++.+--+...
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHH
Confidence 6778889999999998776553
No 194
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=40.50 E-value=36 Score=24.82 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=17.6
Q ss_pred eEEeccCCChhHHHHHHHHHh
Q 046920 4 IKVHGSVFSTATQRVFASLYE 24 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~ 24 (213)
+.+|..+.||||++..-.+..
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEECCCCccHHHHHHHHhh
Confidence 567778899999999988874
No 195
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.91 E-value=52 Score=25.63 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcC----CCCCCCeEEeCCEEeeehHHHHHH
Q 046920 14 ATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLN----PFGQVPVLEHGDQKLFESRAITQY 74 (213)
Q Consensus 14 ~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~g~vP~l~~~~~~i~eS~~I~~y 74 (213)
-|..||.+|+-.++.|+...|.|... ...++..+- -...+|.+...|.-|-+.-.|.+-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 47789999999999999999988642 233333221 235699888888888777766553
No 196
>PHA03075 glutaredoxin-like protein; Provisional
Probab=39.48 E-value=61 Score=21.70 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=44.9
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC-EEeeehHHHHHHHHhhC
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD-QKLFESRAITQYIAQEF 79 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~-~~i~eS~~I~~yL~~~~ 79 (213)
.+.|+|-|.|+-|+-+.-+|....=+|+...|+..+- | .-.|.+-+|..+. ..+ -..+.+||...+
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf------F---sK~g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNILSF------F---SKDGQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee------e---ccCCceEEEecccceeh--HHHHHHhhcccE
Confidence 4789999999999999999999988999999877521 1 1124455555433 222 234667776544
No 197
>PRK09266 hypothetical protein; Provisional
Probab=38.75 E-value=36 Score=26.23 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCC
Q 046920 21 SLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFP 80 (213)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~ 80 (213)
.+...|++++...+++.+-.+.+.-|.-..-.|-+|+...++..+.+...|.+.|.+.+.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 455668999988887654323333344334458899999988777655788888887765
No 198
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=38.73 E-value=68 Score=20.83 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=24.0
Q ss_pred cceEEeccCCChhHHHHHHHHHhcCCCceEEe
Q 046920 2 AGIKVHGSVFSTATQRVFASLYEKELEYELVP 33 (213)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~ 33 (213)
|.-.|......|...-++.+.+++|+|++...
T Consensus 56 P~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 56 PWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred CCEEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 43455666677888888899999999888654
No 199
>PRK08118 topology modulation protein; Reviewed
Probab=38.05 E-value=49 Score=23.49 Aligned_cols=31 Identities=16% Similarity=-0.085 Sum_probs=27.7
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceE
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYEL 31 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~ 31 (213)
|..|.+.|.++|+-+..++.+.+..|+++-.
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~ 31 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHH 31 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence 7789999999999999999999999998543
No 200
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=37.76 E-value=1.1e+02 Score=20.09 Aligned_cols=16 Identities=0% Similarity=-0.089 Sum_probs=12.4
Q ss_pred eEEeccCCChhHHHHH
Q 046920 4 IKVHGSVFSTATQRVF 19 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~ 19 (213)
+..|+.+.|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4566678899998875
No 201
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=37.31 E-value=1.4e+02 Score=20.67 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=45.8
Q ss_pred ceEEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCC----CCCeEEeCCEEeeehHHHHHHHHhh
Q 046920 3 GIKVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFG----QVPVLEHGDQKLFESRAITQYIAQE 78 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g----~vP~l~~~~~~i~eS~~I~~yL~~~ 78 (213)
++++++...|+.|-.---+|......=.....++.. ..........+.. ..=.++.+|..+.+|.|+++-+...
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~--e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQS--EPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccC--chhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHC
Confidence 457777888999988777776666554444444432 1222333333321 1223345669999999999988876
Q ss_pred C
Q 046920 79 F 79 (213)
Q Consensus 79 ~ 79 (213)
-
T Consensus 87 ~ 87 (137)
T COG3011 87 P 87 (137)
T ss_pred C
Confidence 4
No 202
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=36.46 E-value=1e+02 Score=18.96 Aligned_cols=69 Identities=10% Similarity=0.189 Sum_probs=41.2
Q ss_pred eEEeccCCChhHHHHHHHH-----HhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEe--CCEEe------eehHH
Q 046920 4 IKVHGSVFSTATQRVFASL-----YEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH--GDQKL------FESRA 70 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~--~~~~i------~eS~~ 70 (213)
+..++.+.|+.|+...=.+ .+.+ ++....++.. ..+.+....-...+|++.. +|..+ .+...
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 95 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAES 95 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHH
Confidence 4566678899999887444 3332 5555555554 2355556666788998863 44211 24445
Q ss_pred HHHHHHh
Q 046920 71 ITQYIAQ 77 (213)
Q Consensus 71 I~~yL~~ 77 (213)
|..+|.+
T Consensus 96 l~~~i~~ 102 (103)
T PF00085_consen 96 LIEFIEK 102 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666554
No 203
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=36.11 E-value=99 Score=19.03 Aligned_cols=52 Identities=6% Similarity=0.022 Sum_probs=30.9
Q ss_pred eEEeccCCChhHHHHHHHHHhc----CCCceEEeccCCCCCCCchhhhhcCCCCCCCeEE
Q 046920 4 IKVHGSVFSTATQRVFASLYEK----ELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLE 59 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~ 59 (213)
+..|+.+.|+.|+++.-.+... +-.+....++.. ..+++.+......+|++.
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 73 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFV 73 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEE
Confidence 3556678899999887666542 334555555543 234444434456689775
No 204
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=35.69 E-value=54 Score=21.86 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=21.2
Q ss_pred CCCCCeEEeCC-EEeeehHHHHHHHHh
Q 046920 52 FGQVPVLEHGD-QKLFESRAITQYIAQ 77 (213)
Q Consensus 52 ~g~vP~l~~~~-~~i~eS~~I~~yL~~ 77 (213)
..++|+++.++ .++.+...|.+-+..
T Consensus 81 i~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 81 ITKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred ccccCEEEEcCCeEEecccHHHHHHHH
Confidence 45899999988 999999888776654
No 205
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=34.61 E-value=48 Score=20.10 Aligned_cols=22 Identities=9% Similarity=-0.201 Sum_probs=17.7
Q ss_pred eEEeccCCChhHHHHHHHHHhc
Q 046920 4 IKVHGSVFSTATQRVFASLYEK 25 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~ 25 (213)
+.+|....||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4578888999999988887764
No 206
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.27 E-value=45 Score=24.13 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=20.7
Q ss_pred eEEeccCCChhHHHHHH----HHHhc----CCCceEEeccC
Q 046920 4 IKVHGSVFSTATQRVFA----SLYEK----ELEYELVPVDM 36 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~----~l~~~----gi~~~~~~v~~ 36 (213)
|++|....||||....- ++... ++.++.+.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 56888899999984443 34444 45555555433
No 207
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=33.40 E-value=76 Score=16.48 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=20.5
Q ss_pred CCCCCCeEEeCCEEeeehHHHHHHHH
Q 046920 51 PFGQVPVLEHGDQKLFESRAITQYIA 76 (213)
Q Consensus 51 p~g~vP~l~~~~~~i~eS~~I~~yL~ 76 (213)
-.|.+|....++..+.....|.+|+.
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 35778888777788888888888875
No 208
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=33.29 E-value=46 Score=21.34 Aligned_cols=34 Identities=9% Similarity=0.278 Sum_probs=20.0
Q ss_pred eEEeccCCChhHHHHHHHHHh-------cCCCceEEeccCC
Q 046920 4 IKVHGSVFSTATQRVFASLYE-------KELEYELVPVDMK 37 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~-------~gi~~~~~~v~~~ 37 (213)
+.+|+.+.||+|++..-.+.. ..-.+..+.++..
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 566777999999988655542 1114556666554
No 209
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=33.23 E-value=43 Score=19.45 Aligned_cols=32 Identities=13% Similarity=-0.037 Sum_probs=20.5
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEeccC
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVDM 36 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (213)
+||......-+..++-+|+..||++....-..
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 67888778889999999999999998765543
No 210
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=31.20 E-value=70 Score=22.83 Aligned_cols=32 Identities=13% Similarity=-0.114 Sum_probs=21.5
Q ss_pred eEEeccCCChhHHHH----HHHHHhcCCCceEEecc
Q 046920 4 IKVHGSVFSTATQRV----FASLYEKELEYELVPVD 35 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~v~ 35 (213)
|++|....||||... +-+....++.++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 468888999999875 33444556666666553
No 211
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=30.07 E-value=1.8e+02 Score=21.49 Aligned_cols=53 Identities=15% Similarity=-0.003 Sum_probs=32.7
Q ss_pred eEEecc---CCChhHHHHHHHHHhcCC-----CceEEeccCCCCCCCchhhhhcCCCCCCCeEEe
Q 046920 4 IKVHGS---VFSTATQRVFASLYEKEL-----EYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH 60 (213)
Q Consensus 4 ~~Ly~~---~~s~~~~~v~~~l~~~gi-----~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~ 60 (213)
+.+|.. +.||.|..+.=.++...- .+....++.. ..++.....--..+|++..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~~ 83 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTII 83 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEEE
Confidence 556666 779999888777755532 2333333332 2455555566778999875
No 212
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=29.31 E-value=84 Score=22.67 Aligned_cols=31 Identities=13% Similarity=-0.086 Sum_probs=27.7
Q ss_pred cceEEeccCCChhHHHHHHHHHhcCCCceEE
Q 046920 2 AGIKVHGSVFSTATQRVFASLYEKELEYELV 32 (213)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~ 32 (213)
.++.|.|+.+++-+---+.+...+|++|-..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 3589999999999999999999999998643
No 213
>PF01552 Pico_P2B: Picornavirus 2B protein; InterPro: IPR002527 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0000166 nucleotide binding, 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0008233 peptidase activity, 0008234 cysteine-type peptidase activity, 0016740 transferase activity, 0016779 nucleotidyltransferase activity, 0016787 hydrolase activity, 0018144 RNA-protein covalent cross-linking, 0019012 virion
Probab=29.30 E-value=41 Score=21.77 Aligned_cols=26 Identities=12% Similarity=-0.218 Sum_probs=18.2
Q ss_pred EeccCCChhHHHHHHHHHhcCCCceE
Q 046920 6 VHGSVFSTATQRVFASLYEKELEYEL 31 (213)
Q Consensus 6 Ly~~~~s~~~~~v~~~l~~~gi~~~~ 31 (213)
|.|.+.|||.+.-.=++...|+||-.
T Consensus 71 LLGcd~sPw~~LK~Kvc~~lgi~~~~ 96 (99)
T PF01552_consen 71 LLGCDGSPWRWLKSKVCKWLGIPYAE 96 (99)
T ss_pred HhccCCCHHHHHHHHHHhHhCCchHh
Confidence 44566777777777777777777653
No 214
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=29.04 E-value=1.6e+02 Score=21.33 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhccCCceecCCCchHhHhhhhhHHHHHhcCCCcc-ccCCCccHHHHHHHH
Q 046920 138 AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK-LFDARPHVSAWAADI 198 (213)
Q Consensus 138 ~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~-~~~~~p~L~~~~~~~ 198 (213)
+.+......+++.+.++.|+ ...++-.|+-+.+.+........+. .+..+..-...++.+
T Consensus 2 ~~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~~N~r~P~LnL~~~~~~~~~~~~i 62 (177)
T PF03421_consen 2 ESLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAAENARYPGLNLHFFDSPEDFVQAI 62 (177)
T ss_pred hHHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHHHhhcCCCCceEEcCCcHHHHHHH
Confidence 45777888999999998888 7789999999999999888654443 234444445555555
No 215
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=29.02 E-value=3.3e+02 Score=22.39 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhCCCCCCCCCCCCCchh
Q 046920 15 TQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPDKGTQLTCPGKPIA 94 (213)
Q Consensus 15 ~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~~~~~~~l~p~~~~~~ 94 (213)
.++..-+.+..||||+...+....++...+..+...+ ++.++..+.--+.+|.+.... ...
T Consensus 162 g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~---------~E~laVn~~~~Lh~l~~~~~~----------~~~ 222 (374)
T PF03514_consen 162 GRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRP---------GEALAVNCMFQLHHLLDESGA----------LEN 222 (374)
T ss_pred HHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccC---------CcEEEEEeehhhhhhcccccc----------ccc
Confidence 3456667788899999999755555555544433333 345566666666666644221 001
Q ss_pred hHHhHHHHHhhhcCcchhhhhhhhhhccCCCCCCChHHHHHHHHHH---HHHHHHHHhhccCCceecCCCchHhHhhhhh
Q 046920 95 PLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKL---AKILDVYEARLSQSKYLACDSFTLVDLHHLP 171 (213)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 171 (213)
..+.++..+.. +.|.+..+.-.. .....+...++..+.+ ...|+.||..+.... .++..+--.++..
T Consensus 223 ~~~~~L~~ir~-L~P~vvv~~E~e------a~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~---~~r~~~E~~~~~~ 292 (374)
T PF03514_consen 223 PRDAFLRVIRS-LNPKVVVLVEQE------ADHNSPSFLERFREALHYYSALFDSLEACLPRDS---EERLAVERLFFGR 292 (374)
T ss_pred hHHHHHHHHHh-cCCCEEEEEeec------CCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHhhh
Confidence 23444443332 233322221110 0112233334444433 344455555543321 3344444455666
Q ss_pred HHHHHhcCCCccccCCCccHHHHHHHHhc
Q 046920 172 NINLLLGTPVKKLFDARPHVSAWAADITS 200 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (213)
-+..+......+-.+.+..+..|..+|..
T Consensus 293 eI~niVa~eg~~R~eR~e~~~~W~~r~~~ 321 (374)
T PF03514_consen 293 EIMNIVACEGEERVERHERLEQWRRRMRR 321 (374)
T ss_pred HHHHhhhcccccccccccchhHHHHHHHh
Confidence 66666666544445677889999999875
No 216
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=28.78 E-value=80 Score=17.07 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=18.3
Q ss_pred ccHHHHHHHHhcChhHHHHHhhh
Q 046920 189 PHVSAWAADITSRPAWAKVLALL 211 (213)
Q Consensus 189 p~L~~~~~~~~~~p~~~~~~~~~ 211 (213)
..+.++++++.+.|.+++-++..
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~~ 26 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKAC 26 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhc
Confidence 35788999999999998877653
No 217
>COG3150 Predicted esterase [General function prediction only]
Probab=28.49 E-value=61 Score=23.46 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=25.9
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
=|+++..||.+.+..+++++.+-.+..+.+.
T Consensus 4 YlHGFnSSP~shka~l~~q~~~~~~~~i~y~ 34 (191)
T COG3150 4 YLHGFNSSPGSHKAVLLLQFIDEDVRDIEYS 34 (191)
T ss_pred EEecCCCCcccHHHHHHHHHHhccccceeee
Confidence 4788999999999999999988876666554
No 218
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.33 E-value=99 Score=17.82 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=23.0
Q ss_pred eeehHHHHHHHHhhCCCCCCCCCCCCCchhhHHhHHH
Q 046920 65 LFESRAITQYIAQEFPDKGTQLTCPGKPIAPLLVWKE 101 (213)
Q Consensus 65 i~eS~~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~ 101 (213)
..||..|++-|.+++|+ +-|++.......+|+.
T Consensus 3 WtD~~~Iae~Lyd~~pd----vDPktvrFtdlh~wi~ 35 (64)
T COG2975 3 WTDSQEIAEALYDAYPD----VDPKTVRFTDLHQWIC 35 (64)
T ss_pred cchHHHHHHHHHhcCCC----CCcceeehhhHHHHHH
Confidence 46899999999999984 5666533344455554
No 219
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=26.80 E-value=1.2e+02 Score=19.72 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=25.1
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEe
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVP 33 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~ 33 (213)
+.|||-++|+-+.-++.+....|.++-...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 468999999999999999999987764443
No 220
>PTZ00051 thioredoxin; Provisional
Probab=26.46 E-value=1.6e+02 Score=18.07 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=29.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCC---CceEEeccCCCCCCCchhhhhcCCCCCCCeEEe
Q 046920 4 IKVHGSVFSTATQRVFASLYEKEL---EYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH 60 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~ 60 (213)
+..++.+.|+.|+...-.+....- .+....++.. ....+........+|+++.
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKV 77 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEE
Confidence 355667889999887655544211 2233334332 2234444455567887753
No 221
>PRK06217 hypothetical protein; Validated
Probab=26.22 E-value=89 Score=22.37 Aligned_cols=29 Identities=21% Similarity=0.064 Sum_probs=25.8
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCc
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEY 29 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~ 29 (213)
|..|.|.|.++|+-+...+.+.+..|+++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 66689999999999999999999999874
No 222
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=26.06 E-value=1.4e+02 Score=17.57 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=22.5
Q ss_pred eeehHHHHHHHHhhCCCCCCCCCCCCCchhhHHhHHH
Q 046920 65 LFESRAITQYIAQEFPDKGTQLTCPGKPIAPLLVWKE 101 (213)
Q Consensus 65 i~eS~~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~ 101 (213)
..||..|+.-|.+.||+ ..|.........+|+-
T Consensus 2 W~D~~eIA~~L~e~~pd----~dp~~vrFtdL~~wV~ 34 (63)
T TIGR03412 2 WTDSQEIAIALAEAHPD----VDPKTVRFTDLHQWVL 34 (63)
T ss_pred ccCHHHHHHHHHHHCCC----CCcceeeHHHHHHHHH
Confidence 36889999999999995 5665433344455553
No 223
>PHA00510 transcriptional regulator
Probab=26.00 E-value=73 Score=20.71 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=28.1
Q ss_pred CceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHH
Q 046920 154 SKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAAD 197 (213)
Q Consensus 154 ~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~ 197 (213)
+.|+-||+.|+-++.+++.=..............-|+|+.+.+.
T Consensus 80 h~wlKGdnatWqE~hvyaLr~mtkp~tlnwsri~kpkLrerrk~ 123 (125)
T PHA00510 80 HVWLKGDNATWQESHVYALRRMTKPKTLNWSRISKPKLRERRKI 123 (125)
T ss_pred eeEeeCCcchHHHHHHHHHHhhcCccccCHHHhccHhHHHHHhc
Confidence 45777999999999988775544433222233445777766553
No 224
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=25.90 E-value=1.1e+02 Score=25.60 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=30.5
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
+++|.|||-|+++-+-..+++....+..|+...-.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 35799999999999999999999999998876643
No 225
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=25.76 E-value=1.2e+02 Score=23.06 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=26.2
Q ss_pred cceEEeccCCChhHHHHHHHHHhcCCCceEEe
Q 046920 2 AGIKVHGSVFSTATQRVFASLYEKELEYELVP 33 (213)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~ 33 (213)
+.+.|||-|+++-+--++++..+.|.++....
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~s 82 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITS 82 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEecc
Confidence 45899999999999999999999999987654
No 226
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.66 E-value=46 Score=25.16 Aligned_cols=20 Identities=20% Similarity=0.002 Sum_probs=14.6
Q ss_pred ceEEeccCCChhHHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASL 22 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l 22 (213)
.|.+|+...||||+.-+--|
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL 26 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRL 26 (225)
T ss_pred EEEEEeCCcCchhhcCHHHH
Confidence 47888889999997544333
No 227
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=25.30 E-value=1.5e+02 Score=17.97 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=33.6
Q ss_pred eEEeccCCChhHHHHH-----HHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEE
Q 046920 4 IKVHGSVFSTATQRVF-----ASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLE 59 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~-----~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~ 59 (213)
++||-...+|.+.+.. ++=++.+-+|+...+|..+ .|+......---.|+|+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~----~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK----QPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc----CHhHHhhCCEEEechhh
Confidence 5788887777776643 3334557799999999874 34444444444456654
No 228
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=25.11 E-value=78 Score=22.57 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=25.4
Q ss_pred ceEEeccCCChhHHHHHH----HHHhc-CCCceEEeccCC
Q 046920 3 GIKVHGSVFSTATQRVFA----SLYEK-ELEYELVPVDMK 37 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~----~l~~~-gi~~~~~~v~~~ 37 (213)
.+++|....||||....- +++.. ++.++.+.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 378899999999976543 34444 788888877665
No 229
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=24.60 E-value=94 Score=20.70 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=21.5
Q ss_pred CCCCCCeEEeCC-EEeeehHHHHHHHHh
Q 046920 51 PFGQVPVLEHGD-QKLFESRAITQYIAQ 77 (213)
Q Consensus 51 p~g~vP~l~~~~-~~i~eS~~I~~yL~~ 77 (213)
...++|+++.++ .++.+...+.+-+..
T Consensus 81 Gi~k~PAVV~D~~~VVYG~~DV~~A~~~ 108 (113)
T TIGR03757 81 GVTKIPAVVVDRRYVVYGETDVARALAL 108 (113)
T ss_pred CCccCCEEEEcCCeEEecCccHHHHHHH
Confidence 345899999988 899998888776654
No 230
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=24.31 E-value=1.1e+02 Score=18.61 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=28.7
Q ss_pred eEEeccCC-ChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCC
Q 046920 4 IKVHGSVF-STATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFG 53 (213)
Q Consensus 4 ~~Ly~~~~-s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g 53 (213)
+++++-+- .||+-.++.+.++.+++-....+- ..+..++||..
T Consensus 17 fkvlsVpE~aPftAvlkfaAEeFkv~~~TsAii-------TndGvGINP~q 60 (82)
T cd01766 17 FKVLSVPESTPFTAVLKFAAEEFKVPAATSAII-------TNDGIGINPAQ 60 (82)
T ss_pred ceEEeccccCchHHHHHHHHHhcCCCccceeEE-------ecCccccChhh
Confidence 44444443 589999999999999987765442 23445667653
No 231
>PRK00625 shikimate kinase; Provisional
Probab=24.05 E-value=1e+02 Score=22.05 Aligned_cols=28 Identities=18% Similarity=-0.187 Sum_probs=25.0
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceE
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYEL 31 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~ 31 (213)
|.|.|+++|+-+...+.+.+..|++|-.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 8899999999999999999999987743
No 232
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=23.86 E-value=2.1e+02 Score=18.43 Aligned_cols=52 Identities=10% Similarity=-0.001 Sum_probs=28.9
Q ss_pred eEEeccCCChhHHHHHHHH-----HhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEE
Q 046920 4 IKVHGSVFSTATQRVFASL-----YEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLE 59 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~ 59 (213)
+..++.+.|+.|+...-.+ .+.+.......++... .+.......-..+|++.
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLARKLGAHSVPAIV 84 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHHHHcCCccCCEEE
Confidence 4556668899997665333 3333234444444432 23444445667899876
No 233
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=23.38 E-value=1.3e+02 Score=18.74 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=27.5
Q ss_pred eEEeccCCChhHHHHHHHH-----HhcC-CCceEEeccCCCCCCCchhhhhcCCCCCCCeEEe
Q 046920 4 IKVHGSVFSTATQRVFASL-----YEKE-LEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEH 60 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l-----~~~g-i~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~ 60 (213)
+.+|+.+.|+.|+...=.+ .+.+ -.+....++... ...+.+........+|+++.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEEE
Confidence 4566667899998774222 2221 123333344332 11344444444557887753
No 234
>PRK14528 adenylate kinase; Provisional
Probab=22.77 E-value=1.2e+02 Score=21.87 Aligned_cols=30 Identities=10% Similarity=-0.096 Sum_probs=26.4
Q ss_pred CcceEEeccCCChhHHHHHHHHHhcCCCce
Q 046920 1 MAGIKVHGSVFSTATQRVFASLYEKELEYE 30 (213)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~ 30 (213)
|..+.+.|.++|+.+...+.+.+..|+++-
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 778899999999999999999988887753
No 235
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=22.41 E-value=1.2e+02 Score=21.19 Aligned_cols=30 Identities=10% Similarity=-0.114 Sum_probs=25.8
Q ss_pred cceEEeccCCChhHHHHHHHHHhcCCCceE
Q 046920 2 AGIKVHGSVFSTATQRVFASLYEKELEYEL 31 (213)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~ 31 (213)
..+.|.|.++|+-+...+.+.+..|++|-.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 467888999999999999999999998743
No 236
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=22.20 E-value=2.4e+02 Score=18.53 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=27.4
Q ss_pred eEEeccCCChhHHHHHHHHHh------cCCCceEEeccCCCCCCCchhhhhcCCCC-CCCeEEe
Q 046920 4 IKVHGSVFSTATQRVFASLYE------KELEYELVPVDMKAGEHKKEAFLSLNPFG-QVPVLEH 60 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~~~~p~g-~vP~l~~ 60 (213)
+.-++-+.|+.|++..-.+.. .+..|..+.++.. . .+.....+..| .+|+++.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~--~--~~~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD--E--EPKDEEFSPDGGYIPRILF 82 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC--C--CchhhhcccCCCccceEEE
Confidence 344556789999888655544 2224444444322 1 11112334554 4898763
No 237
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=22.15 E-value=2.3e+02 Score=24.12 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=36.3
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCC-----EEeeehH
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGD-----QKLFESR 69 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~-----~~i~eS~ 69 (213)
.++..-.|..++.+..+|+...++|++..+.- .|.+|+|.+++ .+|+|..
T Consensus 64 VFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~~---------------kg~lP~LT~~~kGRy~lII~ENl 118 (487)
T PF12062_consen 64 VFVESQYSQLGQDIVAILESNRFKYKVEIASG---------------KGDLPVLTDNDKGRYSLIIFENL 118 (487)
T ss_pred EEEeeccchhhHHHHHHHHhceeeEEEEEccC---------------CCCCCccccCCCCcEEEEEehhH
Confidence 34444569999999999999999998876521 35678888764 4556654
No 238
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=21.83 E-value=1e+02 Score=21.13 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=15.4
Q ss_pred ceEEeccCCChhHHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASL 22 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l 22 (213)
.++.|....||+|.+..-.+
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHH
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 36888889999999986555
No 239
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=21.75 E-value=1.3e+02 Score=18.44 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=28.3
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCC------ceEEeccCCCCCCCchhhhhcCCCCCCCeEE
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELE------YELVPVDMKAGEHKKEAFLSLNPFGQVPVLE 59 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~------~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~ 59 (213)
+..|+.+.|+.|+...-.+....-. +....++.. ..+.+........+|++.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----AEKDLASRFGVSGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----chHHHHHhCCCCcCCEEE
Confidence 5677778899998754444322211 223333332 234554445566788774
No 240
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=21.64 E-value=1.9e+02 Score=19.26 Aligned_cols=34 Identities=6% Similarity=-0.194 Sum_probs=29.2
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceEEeccCC
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYELVPVDMK 37 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 37 (213)
+.|+|-++++-+..++.+++..+.++..+.+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~ 35 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSD 35 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccc
Confidence 6799999999999999999999888888777654
No 241
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=21.32 E-value=1e+02 Score=17.64 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=15.9
Q ss_pred HHHHHHHhhccCCceecCCCc-hHhHhh
Q 046920 142 KILDVYEARLSQSKYLACDSF-TLVDLH 168 (213)
Q Consensus 142 ~~l~~le~~L~~~~~l~G~~~-t~aDi~ 168 (213)
...+.+.+.+..+.|-.|+.+ |..+++
T Consensus 4 ~i~~~l~~~I~~g~~~~g~~lps~~~la 31 (64)
T PF00392_consen 4 QIYDQLRQAILSGRLPPGDRLPSERELA 31 (64)
T ss_dssp HHHHHHHHHHHTTSS-TTSBE--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCEeCCHHHHH
Confidence 344556666666677777777 766665
No 242
>PF12728 HTH_17: Helix-turn-helix domain
Probab=21.21 E-value=1.5e+02 Score=15.85 Aligned_cols=28 Identities=11% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCCCCCeEEeCCEEeeehHHHHHHHHhh
Q 046920 51 PFGQVPVLEHGDQKLFESRAITQYIAQE 78 (213)
Q Consensus 51 p~g~vP~l~~~~~~i~eS~~I~~yL~~~ 78 (213)
-.|.+|.+..+......-.+|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 4668888886678888888999988763
No 243
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=20.79 E-value=82 Score=23.91 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=37.0
Q ss_pred HHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEe--eehHHHHHHHHhh
Q 046920 21 SLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKL--FESRAITQYIAQE 78 (213)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i--~eS~~I~~yL~~~ 78 (213)
.+...|++++...+...+-...++-|.-....|-+|+...++..+ .....|.+.|-+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 456778999888887654323333333334458899999888655 3456777776543
No 244
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=20.65 E-value=1.2e+02 Score=21.85 Aligned_cols=28 Identities=18% Similarity=-0.053 Sum_probs=25.5
Q ss_pred eEEeccCCChhHHHHHHHHHhcCCCceE
Q 046920 4 IKVHGSVFSTATQRVFASLYEKELEYEL 31 (213)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~ 31 (213)
|++-|.++|+-+-..+.+.++.|+++-.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 7888999999999999999999999765
No 245
>PF05464 Phi-29_GP4: Phi-29-like late genes activator (early protein GP4); InterPro: IPR008771 This family consists of phi-29-like late genes activator (or early protein GP4). This protein is thought to be a positive regulator of late transcription and may function as a sigma-like component of the host RNA polymerase [].; GO: 0003899 DNA-directed RNA polymerase activity, 0016987 sigma factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2FIP_B 2FIO_A.
Probab=20.62 E-value=88 Score=20.34 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=24.6
Q ss_pred CceecCCCchHhHhhhhhHHHHHhcCCCccccCCCccHHHHHHHH
Q 046920 154 SKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADI 198 (213)
Q Consensus 154 ~~~l~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~ 198 (213)
+-|+-|++.|+-.+.+++.=..............-|+|+.+.+-|
T Consensus 80 ~~~~KGd~~TWqE~~~~~Lr~~~k~~tln~s~i~k~kLre~~k~M 124 (125)
T PF05464_consen 80 HAWLKGDNMTWQESHVYALRRMTKPKTLNWSRISKPKLRERRKSM 124 (125)
T ss_dssp -EEETTEEE-HHHHHHHHHHHTTSSS----EEES---HHHHHHH-
T ss_pred hheecCCcchHHHHHHHHHHhhcCccccCHHHhccHHHHHHHHcc
Confidence 346779999999999888755544443322334568888776543
No 246
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=20.61 E-value=1.1e+02 Score=23.47 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHhcCCCceEEeccCCCCCCCchhhhhcCCCCCCCeEEeCCEEeeehHHHHHHHHhhC
Q 046920 21 SLYEKELEYELVPVDMKAGEHKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEF 79 (213)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~g~vP~l~~~~~~i~eS~~I~~yL~~~~ 79 (213)
.++..|++++...+...+-...++-|.-..-.|-+|+...++..+ ++..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~-~~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSY-SSGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEc-cchHHHHHHHHHH
Confidence 456678999998887654333333444334468899999988555 4457777776654
No 247
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=20.46 E-value=2.8e+02 Score=18.62 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=34.4
Q ss_pred EEeccCCChhHHHHHH-------HHHhcCCCceEEeccCCCCCCCchhhhh----cCCCCCCCeEEe--C-CEEeeeh
Q 046920 5 KVHGSVFSTATQRVFA-------SLYEKELEYELVPVDMKAGEHKKEAFLS----LNPFGQVPVLEH--G-DQKLFES 68 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~-------~l~~~gi~~~~~~v~~~~~~~~~~~~~~----~~p~g~vP~l~~--~-~~~i~eS 68 (213)
..++...|++|++..- +....+-.|..+.+|..........+.. .+-.+.+|+++. . |..+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 3455678999987742 2222334678888877532211111211 233567888763 3 3666554
No 248
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.35 E-value=2e+02 Score=17.00 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=25.1
Q ss_pred EEeccCCChhHHHHHHHHHhcCCCceEEecc
Q 046920 5 KVHGSVFSTATQRVFASLYEKELEYELVPVD 35 (213)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (213)
-+..+.....+.+..-.|...|++++.+++.
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 3455666788999999999999999988653
No 249
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=20.26 E-value=1.1e+02 Score=20.72 Aligned_cols=21 Identities=10% Similarity=-0.123 Sum_probs=15.8
Q ss_pred ceEEeccCCChhHHHHHHHHH
Q 046920 3 GIKVHGSVFSTATQRVFASLY 23 (213)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~l~ 23 (213)
.+..|....||+|++..-.+.
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l~ 28 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPELE 28 (154)
T ss_pred EEEEEECCCChhHHHhhHHHH
Confidence 467788889999998865443
Done!