Query 046921
Match_columns 84
No_of_seqs 113 out of 1581
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:51:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13499 EF-hand_7: EF-hand do 99.6 3E-14 6.6E-19 67.8 8.2 61 10-70 1-66 (66)
2 cd05022 S-100A13 S-100A13: S-1 99.6 6.4E-14 1.4E-18 70.3 8.8 70 6-75 5-78 (89)
3 KOG0027 Calmodulin and related 99.5 2.2E-13 4.8E-18 74.3 9.8 71 4-74 3-74 (151)
4 COG5126 FRQ1 Ca2+-binding prot 99.5 2.3E-13 4.9E-18 74.5 9.7 69 4-73 15-84 (160)
5 cd05027 S-100B S-100B: S-100B 99.5 2.4E-13 5.2E-18 68.2 8.5 70 5-74 4-81 (88)
6 smart00027 EH Eps15 homology d 99.5 4.5E-13 9.8E-18 68.2 8.8 71 4-75 5-75 (96)
7 COG5126 FRQ1 Ca2+-binding prot 99.5 3E-13 6.4E-18 74.0 7.9 68 6-73 89-157 (160)
8 cd05026 S-100Z S-100Z: S-100Z 99.5 2.2E-12 4.7E-17 65.4 9.7 71 6-76 7-85 (93)
9 KOG0027 Calmodulin and related 99.5 7.3E-13 1.6E-17 72.3 8.0 66 7-72 83-149 (151)
10 cd05031 S-100A10_like S-100A10 99.4 4.9E-12 1.1E-16 64.1 9.2 70 6-75 5-82 (94)
11 cd05029 S-100A6 S-100A6: S-100 99.4 8.8E-12 1.9E-16 62.5 9.5 71 5-75 6-82 (88)
12 cd00213 S-100 S-100: S-100 dom 99.4 4.4E-12 9.5E-17 63.5 8.1 70 4-73 3-80 (88)
13 cd00052 EH Eps15 homology doma 99.4 4.1E-12 8.9E-17 60.4 7.5 62 12-74 2-63 (67)
14 cd05025 S-100A1 S-100A1: S-100 99.4 9.8E-12 2.1E-16 62.8 9.0 70 6-75 6-83 (92)
15 PTZ00183 centrin; Provisional 99.4 2.3E-11 5E-16 66.2 10.4 69 4-72 12-81 (158)
16 PTZ00184 calmodulin; Provision 99.3 5.2E-11 1.1E-15 64.1 10.1 69 4-72 6-75 (149)
17 cd00051 EFh EF-hand, calcium b 99.3 3.3E-11 7.2E-16 55.7 7.4 60 11-70 2-62 (63)
18 KOG0028 Ca2+-binding protein ( 99.3 4E-11 8.8E-16 65.2 8.4 70 4-73 28-98 (172)
19 KOG0037 Ca2+-binding protein, 99.3 5.8E-11 1.3E-15 67.4 9.4 72 7-78 122-194 (221)
20 PF13833 EF-hand_8: EF-hand do 99.3 3.6E-11 7.8E-16 55.1 6.7 51 22-72 1-53 (54)
21 cd05023 S-100A11 S-100A11: S-1 99.3 1.1E-10 2.5E-15 58.6 8.5 70 5-74 5-82 (89)
22 KOG0034 Ca2+/calmodulin-depend 99.3 5.4E-11 1.2E-15 66.9 7.6 76 7-82 102-185 (187)
23 cd00252 SPARC_EC SPARC_EC; ext 99.3 8.7E-11 1.9E-15 61.6 7.9 64 5-71 44-107 (116)
24 PF14658 EF-hand_9: EF-hand do 99.2 1.9E-10 4.2E-15 54.3 6.6 60 13-72 2-64 (66)
25 PTZ00183 centrin; Provisional 99.2 2.6E-10 5.6E-15 62.1 8.0 64 9-72 90-154 (158)
26 KOG0041 Predicted Ca2+-binding 99.2 2.1E-10 4.5E-15 64.7 7.4 68 4-71 94-162 (244)
27 PTZ00184 calmodulin; Provision 99.2 6.1E-10 1.3E-14 60.0 8.0 63 9-71 84-147 (149)
28 PF12763 EF-hand_4: Cytoskelet 99.2 9.5E-10 2.1E-14 56.7 8.3 69 4-74 5-73 (104)
29 cd05030 calgranulins Calgranul 99.1 1.3E-09 2.8E-14 54.7 7.8 68 6-73 5-80 (88)
30 KOG0030 Myosin essential light 99.1 7.8E-10 1.7E-14 59.1 6.9 70 4-73 6-78 (152)
31 KOG0028 Ca2+-binding protein ( 99.1 1.1E-09 2.5E-14 59.7 7.3 66 7-72 104-170 (172)
32 KOG0044 Ca2+ sensor (EF-Hand s 99.0 1.3E-09 2.8E-14 61.6 6.1 74 7-80 98-183 (193)
33 KOG0031 Myosin regulatory ligh 99.0 6.4E-09 1.4E-13 56.5 8.0 63 4-70 27-90 (171)
34 KOG0036 Predicted mitochondria 99.0 1.2E-08 2.6E-13 62.9 9.7 80 4-83 9-90 (463)
35 KOG0036 Predicted mitochondria 99.0 5.7E-09 1.2E-13 64.3 8.1 76 6-81 79-156 (463)
36 KOG0044 Ca2+ sensor (EF-Hand s 98.9 9.5E-09 2.1E-13 58.1 7.1 68 7-74 62-130 (193)
37 PLN02964 phosphatidylserine de 98.9 1.8E-08 3.9E-13 65.5 8.6 65 8-72 178-243 (644)
38 KOG0037 Ca2+-binding protein, 98.9 3.1E-08 6.8E-13 56.5 8.3 75 8-83 56-132 (221)
39 cd05024 S-100A10 S-100A10: A s 98.9 1.6E-07 3.5E-12 47.2 9.9 69 6-75 5-79 (91)
40 PLN02964 phosphatidylserine de 98.9 4.3E-08 9.3E-13 63.8 9.5 66 4-73 138-208 (644)
41 KOG0031 Myosin regulatory ligh 98.9 4E-08 8.7E-13 53.5 7.9 65 8-72 100-165 (171)
42 PF00036 EF-hand_1: EF hand; 98.8 1E-08 2.2E-13 41.2 3.7 26 11-36 2-27 (29)
43 PF00036 EF-hand_1: EF hand; 98.8 2.3E-08 4.9E-13 40.2 4.0 28 45-72 1-28 (29)
44 PF13405 EF-hand_6: EF-hand do 98.7 4.4E-08 9.5E-13 39.9 3.7 30 10-39 1-31 (31)
45 KOG0038 Ca2+-binding kinase in 98.6 1.8E-07 3.8E-12 50.8 5.2 71 8-78 107-183 (189)
46 KOG0377 Protein serine/threoni 98.6 5E-07 1.1E-11 56.6 7.0 65 9-73 547-616 (631)
47 PRK12309 transaldolase/EF-hand 98.5 6.6E-07 1.4E-11 55.6 6.7 55 6-72 331-385 (391)
48 KOG0040 Ca2+-binding actin-bun 98.5 8.6E-07 1.9E-11 62.1 7.1 70 4-73 2248-2325(2399)
49 PF14788 EF-hand_10: EF hand; 98.5 2E-06 4.2E-11 38.7 6.0 48 25-72 1-49 (51)
50 KOG0030 Myosin essential light 98.5 1.4E-06 3E-11 46.9 6.4 64 7-71 86-150 (152)
51 PF13202 EF-hand_5: EF hand; P 98.5 3.8E-07 8.2E-12 35.4 3.2 23 12-34 2-24 (25)
52 PF10591 SPARC_Ca_bdg: Secrete 98.3 3.7E-07 8E-12 47.8 2.4 62 6-68 51-112 (113)
53 KOG0046 Ca2+-binding actin-bun 98.3 6.7E-06 1.4E-10 52.5 8.0 68 4-72 14-85 (627)
54 PF13202 EF-hand_5: EF hand; P 98.3 2.5E-06 5.4E-11 33.0 3.5 25 46-70 1-25 (25)
55 KOG4251 Calcium binding protei 98.3 1.6E-06 3.4E-11 50.9 3.9 70 3-72 95-168 (362)
56 KOG4223 Reticulocalbin, calume 98.2 5.1E-06 1.1E-10 50.1 5.2 69 4-72 72-141 (325)
57 KOG4223 Reticulocalbin, calume 98.1 1.1E-05 2.5E-10 48.6 5.5 66 8-73 162-229 (325)
58 PF13405 EF-hand_6: EF-hand do 98.1 9.4E-06 2E-10 32.8 3.8 27 45-71 1-27 (31)
59 KOG1029 Endocytic adaptor prot 98.0 2.6E-05 5.5E-10 52.1 5.6 68 4-72 190-257 (1118)
60 KOG0034 Ca2+/calmodulin-depend 98.0 9.4E-05 2E-09 42.0 7.0 31 5-35 29-60 (187)
61 PF09279 EF-hand_like: Phospho 97.8 0.00027 5.9E-09 34.8 6.4 64 10-74 1-71 (83)
62 smart00054 EFh EF-hand, calciu 97.7 7.3E-05 1.6E-09 28.6 3.1 25 12-36 3-27 (29)
63 KOG1955 Ral-GTPase effector RA 97.7 0.00024 5.2E-09 45.6 6.1 67 4-71 226-292 (737)
64 PF13833 EF-hand_8: EF-hand do 97.6 0.00025 5.3E-09 32.0 4.0 31 7-37 23-53 (54)
65 smart00054 EFh EF-hand, calciu 97.5 0.00023 5E-09 27.0 3.2 27 46-72 2-28 (29)
66 PF13499 EF-hand_7: EF-hand do 97.4 0.00048 1E-08 32.2 4.2 30 6-35 37-66 (66)
67 KOG2643 Ca2+ binding protein, 97.2 0.00053 1.2E-08 43.3 3.7 66 10-75 234-317 (489)
68 KOG0377 Protein serine/threoni 97.2 0.0045 9.7E-08 39.6 7.2 69 7-75 462-578 (631)
69 KOG1029 Endocytic adaptor prot 97.1 0.0049 1.1E-07 41.8 7.4 70 4-75 11-80 (1118)
70 KOG0042 Glycerol-3-phosphate d 97.1 0.0032 7E-08 41.3 6.1 70 4-73 588-658 (680)
71 KOG2243 Ca2+ release channel ( 97.0 0.0018 3.9E-08 46.7 4.8 57 14-70 4062-4118(5019)
72 KOG2562 Protein phosphatase 2 97.0 0.0038 8.3E-08 39.8 5.8 64 8-73 277-344 (493)
73 PF14788 EF-hand_10: EF hand; 97.0 0.0034 7.4E-08 28.3 4.1 32 7-38 19-50 (51)
74 KOG4666 Predicted phosphate ac 96.8 0.0035 7.6E-08 38.6 4.2 70 7-76 294-363 (412)
75 PF05517 p25-alpha: p25-alpha 96.6 0.042 9.2E-07 30.3 8.4 61 13-73 6-70 (154)
76 cd05022 S-100A13 S-100A13: S-1 96.6 0.0066 1.4E-07 30.5 3.9 31 9-39 47-77 (89)
77 KOG0169 Phosphoinositide-speci 96.5 0.012 2.5E-07 39.7 5.8 70 4-73 131-201 (746)
78 smart00027 EH Eps15 homology d 96.5 0.0078 1.7E-07 30.4 4.0 30 44-73 10-39 (96)
79 KOG2643 Ca2+ binding protein, 96.4 0.0022 4.7E-08 40.7 1.9 53 19-72 209-261 (489)
80 KOG4065 Uncharacterized conser 96.4 0.029 6.2E-07 29.7 5.6 56 13-68 71-141 (144)
81 KOG3555 Ca2+-binding proteogly 96.4 0.0085 1.8E-07 37.2 4.1 65 5-72 246-310 (434)
82 cd05026 S-100Z S-100Z: S-100Z 96.3 0.012 2.7E-07 29.6 4.0 33 7-39 51-83 (93)
83 cd00052 EH Eps15 homology doma 96.3 0.0076 1.6E-07 28.0 2.9 27 47-73 2-28 (67)
84 cd05023 S-100A11 S-100A11: S-1 96.1 0.017 3.6E-07 29.0 3.8 32 7-38 50-81 (89)
85 cd05029 S-100A6 S-100A6: S-100 96.0 0.021 4.5E-07 28.6 3.9 32 7-38 49-80 (88)
86 cd05030 calgranulins Calgranul 96.0 0.019 4.2E-07 28.6 3.8 31 8-38 50-80 (88)
87 cd05024 S-100A10 S-100A10: A s 95.9 0.017 3.7E-07 29.2 3.4 34 6-39 45-78 (91)
88 cd05025 S-100A1 S-100A1: S-100 95.9 0.026 5.7E-07 28.2 3.9 32 7-38 50-81 (92)
89 cd05031 S-100A10_like S-100A10 95.8 0.022 4.8E-07 28.6 3.6 33 7-39 49-81 (94)
90 KOG4578 Uncharacterized conser 95.8 0.0087 1.9E-07 36.9 2.3 65 10-74 334-400 (421)
91 cd00051 EFh EF-hand, calcium b 95.8 0.022 4.8E-07 25.3 3.3 28 46-73 2-29 (63)
92 cd00213 S-100 S-100: S-100 dom 95.8 0.051 1.1E-06 26.8 4.8 28 45-72 9-38 (88)
93 KOG0035 Ca2+-binding actin-bun 95.6 0.14 3.1E-06 35.5 7.6 72 4-75 742-819 (890)
94 KOG0038 Ca2+-binding kinase in 95.5 0.048 1E-06 30.1 4.4 60 13-72 75-136 (189)
95 cd00252 SPARC_EC SPARC_EC; ext 95.4 0.04 8.7E-07 29.1 3.8 27 9-35 80-106 (116)
96 KOG0751 Mitochondrial aspartat 95.3 0.16 3.4E-06 33.4 6.7 56 16-72 81-136 (694)
97 cd05027 S-100B S-100B: S-100B 95.3 0.058 1.2E-06 27.0 3.9 32 7-38 49-80 (88)
98 KOG0998 Synaptic vesicle prote 95.1 0.012 2.6E-07 40.5 1.4 69 4-73 278-346 (847)
99 PF14658 EF-hand_9: EF-hand do 94.8 0.076 1.6E-06 25.3 3.3 32 6-37 32-64 (66)
100 PF05042 Caleosin: Caleosin re 94.7 0.24 5.1E-06 28.0 5.6 68 7-74 5-126 (174)
101 KOG1707 Predicted Ras related/ 94.7 0.08 1.7E-06 35.2 4.2 64 4-71 310-376 (625)
102 PF12763 EF-hand_4: Cytoskelet 94.5 0.11 2.4E-06 26.9 3.8 32 7-38 41-72 (104)
103 KOG2562 Protein phosphatase 2 94.5 0.13 2.7E-06 33.3 4.7 63 9-71 311-378 (493)
104 KOG4666 Predicted phosphate ac 94.4 0.16 3.5E-06 31.6 4.9 63 9-71 259-323 (412)
105 KOG4251 Calcium binding protei 94.1 0.25 5.5E-06 29.7 5.2 57 12-68 284-341 (362)
106 PF08726 EFhand_Ca_insen: Ca2+ 94.0 0.1 2.2E-06 25.1 2.8 55 7-68 4-65 (69)
107 KOG0040 Ca2+-binding actin-bun 93.2 0.39 8.6E-06 35.7 5.5 61 9-70 2296-2359(2399)
108 PRK12309 transaldolase/EF-hand 93.1 0.28 6.1E-06 31.2 4.5 32 7-38 355-386 (391)
109 KOG0751 Mitochondrial aspartat 92.5 0.8 1.7E-05 30.3 5.9 62 7-68 177-240 (694)
110 PF05042 Caleosin: Caleosin re 91.7 1.5 3.3E-05 24.9 7.1 62 8-70 95-164 (174)
111 PF09069 EF-hand_3: EF-hand; 91.5 1 2.2E-05 22.8 7.7 63 8-73 2-76 (90)
112 KOG1707 Predicted Ras related/ 90.8 3.3 7.2E-05 28.0 7.4 36 4-39 190-225 (625)
113 PLN02228 Phosphoinositide phos 90.4 3.5 7.7E-05 27.8 7.3 65 7-73 22-93 (567)
114 PLN02222 phosphoinositide phos 90.2 3.1 6.6E-05 28.1 6.9 63 8-72 24-90 (581)
115 KOG4004 Matricellular protein 89.7 0.082 1.8E-06 30.6 -0.3 59 15-74 193-252 (259)
116 KOG1954 Endocytosis/signaling 89.3 0.83 1.8E-05 29.4 3.7 55 13-69 448-502 (532)
117 PLN02230 phosphoinositide phos 87.7 6.7 0.00015 26.7 7.2 65 7-72 27-102 (598)
118 KOG0041 Predicted Ca2+-binding 87.7 1.3 2.7E-05 26.0 3.5 28 46-73 101-128 (244)
119 KOG3866 DNA-binding protein of 87.7 0.81 1.8E-05 28.5 2.9 59 13-71 248-323 (442)
120 KOG4347 GTPase-activating prot 87.5 1.2 2.5E-05 30.3 3.7 48 11-58 557-605 (671)
121 KOG0998 Synaptic vesicle prote 87.2 0.41 8.9E-06 33.4 1.6 67 6-73 8-74 (847)
122 PF10591 SPARC_Ca_bdg: Secrete 86.8 1.2 2.6E-05 23.3 3.0 23 11-33 90-112 (113)
123 PF14513 DAG_kinase_N: Diacylg 86.7 1.5 3.3E-05 24.0 3.3 48 24-72 6-60 (138)
124 PLN02952 phosphoinositide phos 85.8 9.1 0.0002 26.1 7.6 65 7-72 36-110 (599)
125 PLN02952 phosphoinositide phos 84.4 6.6 0.00014 26.8 6.0 50 22-72 13-65 (599)
126 PF08976 DUF1880: Domain of un 84.4 1.8 3.8E-05 23.0 2.8 31 41-71 4-34 (118)
127 cd07313 terB_like_2 tellurium 84.0 4 8.7E-05 20.6 4.1 51 22-72 12-65 (104)
128 PF01023 S_100: S-100/ICaBP ty 82.7 2.9 6.4E-05 18.1 4.3 32 6-37 3-36 (44)
129 PF09068 EF-hand_2: EF hand; 81.7 6.3 0.00014 21.2 5.2 64 8-71 40-124 (127)
130 PLN02223 phosphoinositide phos 80.0 16 0.00034 24.7 6.9 65 7-72 14-92 (537)
131 PF08414 NADPH_Ox: Respiratory 79.9 6.6 0.00014 20.3 5.9 65 7-75 28-95 (100)
132 KOG1265 Phospholipase C [Lipid 77.5 22 0.00048 25.8 6.7 65 9-73 221-300 (1189)
133 KOG2871 Uncharacterized conser 77.3 3.7 8E-05 26.4 2.9 33 7-39 307-339 (449)
134 COG4103 Uncharacterized protei 77.0 10 0.00022 21.0 4.7 60 12-73 33-95 (148)
135 TIGR01848 PHA_reg_PhaR polyhyd 76.4 9.1 0.0002 20.1 5.1 49 16-64 10-69 (107)
136 KOG0169 Phosphoinositide-speci 75.4 24 0.00051 24.9 6.3 61 8-71 171-231 (746)
137 KOG4347 GTPase-activating prot 74.1 17 0.00036 25.2 5.3 30 44-73 555-584 (671)
138 KOG2301 Voltage-gated Ca2+ cha 72.6 3.8 8.2E-05 31.0 2.4 68 4-72 1412-1484(1592)
139 PF00404 Dockerin_1: Dockerin 70.0 5.3 0.00012 14.5 2.3 13 20-32 2-14 (21)
140 PF09373 PMBR: Pseudomurein-bi 63.5 9.9 0.00021 15.2 2.9 19 58-76 2-20 (33)
141 PF03979 Sigma70_r1_1: Sigma-7 62.6 17 0.00038 17.7 3.1 47 7-56 5-51 (82)
142 PF12486 DUF3702: ImpA domain 61.3 25 0.00054 19.6 3.7 32 6-37 66-97 (148)
143 PF12174 RST: RCD1-SRO-TAF4 (R 59.7 19 0.00042 17.3 4.2 49 25-75 8-56 (70)
144 KOG1955 Ral-GTPase effector RA 57.4 17 0.00036 24.6 3.0 32 7-38 263-294 (737)
145 PF07879 PHB_acc_N: PHB/PHA ac 56.8 9.4 0.0002 18.1 1.4 23 16-38 10-32 (64)
146 COG4359 Uncharacterized conser 53.9 26 0.00056 20.6 3.1 42 21-67 9-50 (220)
147 TIGR01639 P_fal_TIGR01639 Plas 52.6 24 0.00053 16.3 5.0 31 24-54 8-39 (61)
148 KOG0713 Molecular chaperone (D 52.3 32 0.0007 21.9 3.5 48 6-53 28-81 (336)
149 KOG3555 Ca2+-binding proteogly 52.3 34 0.00074 22.1 3.6 32 43-74 249-280 (434)
150 PF02761 Cbl_N2: CBL proto-onc 51.3 32 0.00069 17.3 6.1 47 24-70 21-68 (85)
151 PRK05988 formate dehydrogenase 49.7 45 0.00098 18.6 6.0 45 1-46 1-58 (156)
152 cd00086 homeodomain Homeodomai 47.0 27 0.00059 15.2 5.9 43 4-52 8-50 (59)
153 TIGR03573 WbuX N-acetyl sugar 46.0 75 0.0016 20.1 4.9 12 41-52 303-314 (343)
154 PF14164 YqzH: YqzH-like prote 45.0 36 0.00079 16.1 3.9 30 9-38 8-38 (64)
155 KOG3449 60S acidic ribosomal p 44.8 49 0.0011 17.5 5.2 42 13-54 5-47 (112)
156 TIGR02736 cbb3_Q_epsi cytochro 43.9 27 0.00058 16.1 1.7 24 49-72 19-42 (56)
157 PF02269 TFIID-18kDa: Transcri 40.9 13 0.00029 18.8 0.6 24 54-77 48-71 (93)
158 KOG4286 Dystrophin-like protei 40.0 1.1E+02 0.0025 22.1 4.8 47 12-58 473-520 (966)
159 PF01885 PTS_2-RNA: RNA 2'-pho 39.5 76 0.0017 18.3 3.9 35 20-54 27-62 (186)
160 cd02977 ArsC_family Arsenate R 39.1 55 0.0012 16.5 3.9 54 23-76 33-89 (105)
161 PF09066 B2-adapt-app_C: Beta2 38.1 35 0.00077 17.5 2.0 20 57-76 3-22 (114)
162 PF08355 EF_assoc_1: EF hand a 37.2 39 0.00085 16.5 1.9 18 54-71 12-29 (76)
163 CHL00195 ycf46 Ycf46; Provisio 37.2 1.3E+02 0.0028 20.3 6.1 56 9-65 145-200 (489)
164 PF05099 TerB: Tellurite resis 37.1 16 0.00035 19.3 0.6 51 21-71 35-88 (140)
165 cd08324 CARD_NOD1_CARD4 Caspas 35.2 65 0.0014 16.2 6.4 68 7-78 10-78 (85)
166 PRK09430 djlA Dna-J like membr 34.8 1.1E+02 0.0024 18.7 6.8 60 12-72 56-120 (267)
167 COG2255 RuvB Holliday junction 34.5 1.2E+02 0.0027 19.3 6.8 73 10-82 223-299 (332)
168 KOG4301 Beta-dystrobrevin [Cyt 34.3 93 0.002 20.2 3.5 58 12-70 113-171 (434)
169 PF10743 Phage_Cox: Regulatory 33.9 58 0.0013 16.5 2.2 23 59-81 11-33 (87)
170 PF00046 Homeobox: Homeobox do 32.9 51 0.0011 14.4 5.8 42 4-51 8-49 (57)
171 PF00427 PBS_linker_poly: Phyc 32.8 79 0.0017 17.3 2.8 21 58-78 42-62 (131)
172 PRK00819 RNA 2'-phosphotransfe 32.7 1E+02 0.0022 17.7 4.3 35 20-54 28-63 (179)
173 PF08461 HTH_12: Ribonuclease 31.8 64 0.0014 15.1 3.4 36 22-57 10-46 (66)
174 PF12419 DUF3670: SNF2 Helicas 31.5 93 0.002 16.9 5.0 48 22-69 80-138 (141)
175 COG5502 Uncharacterized conser 31.4 97 0.0021 17.1 4.0 56 23-82 73-133 (135)
176 KOG4070 Putative signal transd 31.4 1E+02 0.0023 17.5 3.2 32 23-54 71-108 (180)
177 PF03672 UPF0154: Uncharacteri 31.0 69 0.0015 15.2 3.7 30 24-53 30-60 (64)
178 COG5562 Phage envelope protein 29.7 52 0.0011 18.1 1.8 22 50-71 78-99 (137)
179 PF14178 YppF: YppF-like prote 29.7 63 0.0014 15.1 1.8 15 24-38 35-49 (60)
180 PF08100 Dimerisation: Dimeris 28.9 61 0.0013 14.5 1.7 23 14-36 11-33 (51)
181 PF07261 DnaB_2: Replication i 28.1 75 0.0016 14.8 2.3 41 15-55 2-44 (77)
182 PF11116 DUF2624: Protein of u 27.7 93 0.002 15.7 6.3 48 24-71 13-61 (85)
183 PRK00523 hypothetical protein; 27.7 86 0.0019 15.3 3.7 29 25-53 39-68 (72)
184 PRK05849 hypothetical protein; 27.6 1.3E+02 0.0029 21.7 3.7 43 23-71 472-514 (783)
185 PF06226 DUF1007: Protein of u 27.5 88 0.0019 18.3 2.6 24 15-38 56-79 (212)
186 PF07499 RuvA_C: RuvA, C-termi 27.4 65 0.0014 13.8 4.2 37 29-68 4-40 (47)
187 KOG2616 Pyridoxalphosphate-dep 26.8 1.6E+02 0.0034 18.0 4.8 35 29-63 102-136 (266)
188 PF11569 Homez: Homeodomain le 26.3 81 0.0018 14.5 2.4 40 8-53 10-49 (56)
189 PF10256 Erf4: Golgin subfamil 26.2 1.1E+02 0.0023 15.9 2.7 16 23-38 27-42 (118)
190 PRK09613 thiH thiamine biosynt 25.5 2.2E+02 0.0047 19.2 5.9 48 23-72 10-57 (469)
191 COG3763 Uncharacterized protei 25.5 95 0.0021 15.1 3.6 29 25-53 38-67 (71)
192 COG5069 SAC6 Ca2+-binding acti 24.7 44 0.00096 22.6 1.1 56 13-68 28-83 (612)
193 COG2818 Tag 3-methyladenine DN 24.6 1.2E+02 0.0027 17.7 2.7 33 7-39 53-85 (188)
194 KOG1265 Phospholipase C [Lipid 24.3 3.1E+02 0.0068 20.6 5.1 33 41-73 218-250 (1189)
195 PRK13344 spxA transcriptional 24.0 1.3E+02 0.0029 16.2 3.2 51 24-75 35-88 (132)
196 PRK10026 arsenate reductase; P 23.8 1.4E+02 0.0031 16.4 3.9 52 24-76 37-91 (141)
197 PF03960 ArsC: ArsC family; I 23.2 42 0.00091 17.2 0.7 53 24-76 31-86 (110)
198 PF14237 DUF4339: Domain of un 23.0 79 0.0017 13.3 1.5 17 21-37 9-25 (45)
199 cd03035 ArsC_Yffb Arsenate Red 22.3 1.3E+02 0.0028 15.4 2.9 51 24-76 34-87 (105)
200 KOG0506 Glutaminase (contains 22.3 2.7E+02 0.0059 19.2 4.9 57 14-70 91-156 (622)
201 PF08564 CDC37_C: Cdc37 C term 22.0 81 0.0018 16.3 1.6 48 7-54 13-60 (99)
202 PF04876 Tenui_NCP: Tenuivirus 21.8 1.7E+02 0.0037 16.6 3.4 57 23-82 97-170 (175)
203 KOG4403 Cell surface glycoprot 21.8 2.7E+02 0.0058 18.9 5.3 61 7-71 66-128 (575)
204 PF13050 DUF3911: Protein of u 21.8 1.1E+02 0.0024 14.6 2.3 19 4-22 9-27 (77)
205 KOG0039 Ferric reductase, NADH 21.7 3E+02 0.0064 19.4 6.0 67 8-75 17-92 (646)
206 PF07848 PaaX: PaaX-like prote 21.5 1.1E+02 0.0025 14.5 4.0 42 12-54 7-48 (70)
207 cd03032 ArsC_Spx Arsenate Redu 21.1 1.4E+02 0.003 15.4 4.2 52 24-76 35-89 (115)
208 cd07316 terB_like_DjlA N-termi 20.9 1.3E+02 0.0028 14.9 6.7 15 22-36 12-26 (106)
209 PF09824 ArsR: ArsR transcript 20.8 1.8E+02 0.0039 16.6 4.1 55 26-81 87-142 (160)
210 PF12631 GTPase_Cys_C: Catalyt 20.5 1.2E+02 0.0026 14.4 3.5 13 26-38 40-52 (73)
211 PRK01844 hypothetical protein; 20.1 1.3E+02 0.0028 14.7 3.7 29 25-53 38-67 (72)
No 1
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.59 E-value=3e-14 Score=67.82 Aligned_cols=61 Identities=48% Similarity=0.784 Sum_probs=52.9
Q ss_pred HHHHHHHHhcccCCCcccHHHHHHHHHhcCC-CCHH----HHHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 10 DRERVFKRFDLNGDGKISASELADCLNALSS-VSDE----EVKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 10 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~----~~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
+++.+|..+|++++|+|+.+|+..++..++. .+.. .++.++..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5789999999999999999999999999874 4343 45566999999999999999998874
No 2
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.58 E-value=6.4e-14 Score=70.34 Aligned_cols=70 Identities=21% Similarity=0.375 Sum_probs=62.6
Q ss_pred HhHHHHHHHHHHhcc-cCCCcccHHHHHHHHHh-cCC-CCH-HHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 6 QDKADRERVFKRFDL-NGDGKISASELADCLNA-LSS-VSD-EEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~-~~~g~l~~~e~~~~l~~-~~~-~~~-~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
..+..+..+|..||. +++|+|+..||+.++.. ++. ++. .++..+++.+|.+++|.|+|+||..++.....
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 567889999999999 99999999999999998 774 555 88999999999999999999999998876543
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.54 E-value=2.2e-13 Score=74.35 Aligned_cols=71 Identities=38% Similarity=0.678 Sum_probs=65.8
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
+..+...+..+|..+|.+++|+|+..++..+++.++ .++..++..++...|.+++|.|++++|..++....
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 457788999999999999999999999999999999 58899999999999999999999999999987553
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.54 E-value=2.3e-13 Score=74.48 Aligned_cols=69 Identities=29% Similarity=0.552 Sum_probs=64.6
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
+.+++++++++|..+|++++|.|+..+|..+++.++ +++..++.+++...+. +++.|+|.+|+.++...
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 678999999999999999999999999999999988 6999999999999999 89999999999998754
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.53 E-value=2.4e-13 Score=68.22 Aligned_cols=70 Identities=34% Similarity=0.560 Sum_probs=62.0
Q ss_pred HHhHHHHHHHHHHhc-ccCCC-cccHHHHHHHHHh-----cCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 5 EQDKADRERVFKRFD-LNGDG-KISASELADCLNA-----LSS-VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 5 ~~~~~~~~~~F~~~d-~~~~g-~l~~~e~~~~l~~-----~~~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
...+..+.++|..+| .+++| .|+..+++.+++. ++. ++..++..+++.+|.+++|.|+|++|..++....
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 356788999999998 79999 6999999999998 664 7788899999999999999999999998887543
No 6
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.51 E-value=4.5e-13 Score=68.18 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=64.1
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
++++...+..+|..+|.+++|.|+..+++.+++..+ .+..++..++..++.+++|.|++++|+.++.....
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~-~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG-LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC-CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998865 78889999999999999999999999998875443
No 7
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.50 E-value=3e-13 Score=74.03 Aligned_cols=68 Identities=41% Similarity=0.685 Sum_probs=63.4
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
...+++..+|+.||.+++|+|+..++..++..++ ..+..++..+++.++.+++|.|++++|...+...
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 4578999999999999999999999999999999 5999999999999999999999999999987654
No 8
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.48 E-value=2.2e-12 Score=65.36 Aligned_cols=71 Identities=25% Similarity=0.396 Sum_probs=60.2
Q ss_pred HhHHHHHHHHHHhc-ccCCC-cccHHHHHHHHHhc-----C-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHHH
Q 046921 6 QDKADRERVFKRFD-LNGDG-KISASELADCLNAL-----S-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 6 ~~~~~~~~~F~~~d-~~~~g-~l~~~e~~~~l~~~-----~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~ 76 (84)
..+..+.++|..|| .+++| .|+..||+.++... . ..+..++..++..+|.+++|.|+|++|+.++......
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 56778889999999 78998 59999999999762 2 2467789999999999999999999999998766443
No 9
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=7.3e-13 Score=72.30 Aligned_cols=66 Identities=41% Similarity=0.743 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
....++++|+.+|++++|+|+..+|+.++..++ ..+..++..+++..+.+++|.|+|++|+.++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 356899999999999999999999999999999 588899999999999999999999999998864
No 10
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.43 E-value=4.9e-12 Score=64.15 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHHhcc-cC-CCcccHHHHHHHHHh-----cC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 6 QDKADRERVFKRFDL-NG-DGKISASELADCLNA-----LS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~-~~-~g~l~~~e~~~~l~~-----~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
.....+..+|..+|. ++ +|.|+..|++.++.. ++ .++..++..++..+|.+++|.|+|++|+.++.....
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 457788999999997 87 699999999999986 34 367889999999999999999999999998875544
No 11
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.42 E-value=8.8e-12 Score=62.54 Aligned_cols=71 Identities=21% Similarity=0.434 Sum_probs=61.6
Q ss_pred HHhHHHHHHHHHHhcc-cC-CCcccHHHHHHHHHh---cC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 5 EQDKADRERVFKRFDL-NG-DGKISASELADCLNA---LS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 5 ~~~~~~~~~~F~~~d~-~~-~g~l~~~e~~~~l~~---~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
.+.+..+-.+|..|+. ++ +|+|+..||+.++.. ++ .++..++.++++..|.+++|.|+|++|+.++.....
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 3577888999999998 66 799999999999963 45 478899999999999999999999999998876543
No 12
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.41 E-value=4.4e-12 Score=63.53 Aligned_cols=70 Identities=24% Similarity=0.430 Sum_probs=61.1
Q ss_pred cHHhHHHHHHHHHHhcc--cCCCcccHHHHHHHHHh-cCC-C----CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDL--NGDGKISASELADCLNA-LSS-V----SDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~--~~~g~l~~~e~~~~l~~-~~~-~----~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.+++++.++.+|..+|+ +++|.|+..++..+++. ++. + +..++..++..++.+++|.|++++|+.++...
T Consensus 3 ~~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 3 LEKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 35788899999999999 89999999999999976 332 2 47889999999999999999999999988754
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.41 E-value=4.1e-12 Score=60.35 Aligned_cols=62 Identities=26% Similarity=0.416 Sum_probs=55.9
Q ss_pred HHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 12 ERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 12 ~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
+.+|..+|++++|.|+..+++.++...+ .+...+..++..++.+++|.|++++|+.++....
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g-~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG-LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC-CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 5789999999999999999999998875 5788899999999999999999999999887543
No 14
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.40 E-value=9.8e-12 Score=62.80 Aligned_cols=70 Identities=33% Similarity=0.504 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHHhc-ccCCC-cccHHHHHHHHHh-cC-----CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 6 QDKADRERVFKRFD-LNGDG-KISASELADCLNA-LS-----SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 6 ~~~~~~~~~F~~~d-~~~~g-~l~~~e~~~~l~~-~~-----~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
.....+.++|..+| .+++| .|+..+++.+++. ++ .++..++..++..+|.+++|.|+|++|+.++.....
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 45678999999997 99999 5999999999975 43 257788999999999999999999999998875543
No 15
>PTZ00183 centrin; Provisional
Probab=99.38 E-value=2.3e-11 Score=66.25 Aligned_cols=69 Identities=33% Similarity=0.633 Sum_probs=62.7
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
++.+..++..+|..+|++++|.|+..++..+++.++ .++...+..++..++.+++|.|++.+|+.++..
T Consensus 12 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 12 TEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 567889999999999999999999999999999887 477888999999999999999999999987754
No 16
>PTZ00184 calmodulin; Provisional
Probab=99.34 E-value=5.2e-11 Score=64.14 Aligned_cols=69 Identities=32% Similarity=0.648 Sum_probs=62.4
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
++++...+...|..+|.+++|.|+.+++..++..++ .+....+..++..++.+++|.|++++|..++..
T Consensus 6 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred CHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 567888999999999999999999999999998877 477788999999999999999999999988764
No 17
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.32 E-value=3.3e-11 Score=55.74 Aligned_cols=60 Identities=43% Similarity=0.797 Sum_probs=54.6
Q ss_pred HHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 11 RERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 11 ~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
+..+|..+|.+++|.|+.+++..++..++ ..+...+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999987 4788889999999999999999999998764
No 18
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=4e-11 Score=65.21 Aligned_cols=70 Identities=30% Similarity=0.574 Sum_probs=64.4
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.+++.+++...|..+|++.+|+|+..+|+.++++++ .+...++.+++..+|++++|.|+|++|...+...
T Consensus 28 ~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 28 TEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK 98 (172)
T ss_pred cHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH
Confidence 456779999999999999999999999999999999 6889999999999999999999999999987643
No 19
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.31 E-value=5.8e-11 Score=67.39 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRGLIK 78 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~~~ 78 (84)
.+..++++|+.+|+|++|.|+..||++++..++ .++.+....+++.++..++|.+.|++|+.+........+
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~ 194 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTE 194 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999 699999999999999888999999999998877665433
No 20
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.30 E-value=3.6e-11 Score=55.06 Aligned_cols=51 Identities=45% Similarity=0.780 Sum_probs=46.7
Q ss_pred CCCcccHHHHHHHHHhcC-C-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 22 GDGKISASELADCLNALS-S-VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 22 ~~g~l~~~e~~~~l~~~~-~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
.+|.|+.++|+.++..++ . ++..++..++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 379999999999998777 6 88999999999999999999999999998864
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.28 E-value=1.1e-10 Score=58.62 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=59.3
Q ss_pred HHhHHHHHHHHHH-hcccCCC-cccHHHHHHHHHhcC------CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 5 EQDKADRERVFKR-FDLNGDG-KISASELADCLNALS------SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 5 ~~~~~~~~~~F~~-~d~~~~g-~l~~~e~~~~l~~~~------~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
...+..+..+|.. +|.+++| .|+..||+.++.... .....++..++..+|.+++|.|+|++|+.++....
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4678889999999 6777876 999999999997752 24567899999999999999999999999887553
No 22
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.27 E-value=5.4e-11 Score=66.91 Aligned_cols=76 Identities=36% Similarity=0.584 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC--CC--H----HHHHHHHHhhcCCCCCceeHHHHHHHHHHcHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSS--VS--D----EEVKKMMAEIDTDGDGVISYDEFTAFAEANRGLIK 78 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~--~~--~----~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~~~ 78 (84)
..+++.-+|+.||.+++|.|+.+++++++....+ .. . ..+..++..+|.+++|.|+++||..++...+...+
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~ 181 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLE 181 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHH
Confidence 3468999999999999999999999999988752 33 2 23566899999999999999999999998877766
Q ss_pred HHHh
Q 046921 79 NVAK 82 (84)
Q Consensus 79 ~~~~ 82 (84)
.+..
T Consensus 182 ~m~~ 185 (187)
T KOG0034|consen 182 KMTI 185 (187)
T ss_pred HcCC
Confidence 6543
No 23
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.27 E-value=8.7e-11 Score=61.62 Aligned_cols=64 Identities=33% Similarity=0.362 Sum_probs=56.2
Q ss_pred HHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 5 EQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 5 ~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
+.....+..+|..+|.+++|.|+.+|+..+. +. +....+..++..+|.+++|.|+++||...+.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~-~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD-PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc-chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4567788999999999999999999999876 22 5567788999999999999999999999883
No 24
>PF14658 EF-hand_9: EF-hand domain
Probab=99.21 E-value=1.9e-10 Score=54.33 Aligned_cols=60 Identities=27% Similarity=0.608 Sum_probs=54.8
Q ss_pred HHHHHhcccCCCcccHHHHHHHHHhcCC--CCHHHHHHHHHhhcCCCC-CceeHHHHHHHHHH
Q 046921 13 RVFKRFDLNGDGKISASELADCLNALSS--VSDEEVKKMMAEIDTDGD-GVISYDEFTAFAEA 72 (84)
Q Consensus 13 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~d~~~~-g~l~~~ef~~~~~~ 72 (84)
.+|..+|+++.|.+...+++.+|+..+. +.+.+++.+.+.+|.++. |.|+++.|...|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999883 778899999999999887 99999999998874
No 25
>PTZ00183 centrin; Provisional
Probab=99.20 E-value=2.6e-10 Score=62.12 Aligned_cols=64 Identities=34% Similarity=0.571 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
..+..+|..+|++++|.|+..++..++...+ .++..++..++..++.+++|.|++++|..++..
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 4677888888888888888888888887766 477778888888888888888888888877754
No 26
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.19 E-value=2.1e-10 Score=64.68 Aligned_cols=68 Identities=31% Similarity=0.491 Sum_probs=61.7
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
+..+++.+..+|..||.+.||+|+..|++.++..++ +.++.-++.++...|-|.+|+|+|.+|+-++.
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 457888899999999999999999999999999999 46677889999999999999999999987764
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.15 E-value=6.1e-10 Score=59.98 Aligned_cols=63 Identities=43% Similarity=0.731 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
..+..+|..+|.+++|.|+..++..++...+ ..+...+..++..++.+++|.|++++|..++.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4566777777777777777777777777665 35666777777777777777777777776653
No 28
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.15 E-value=9.5e-10 Score=56.67 Aligned_cols=69 Identities=20% Similarity=0.403 Sum_probs=60.0
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
++++.++...+|...++ .+|.|+-.+.+.++...+ ++...+..+|...|.+++|.++++||+.+|....
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~-L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG-LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT-SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC-CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 56789999999999985 689999999999988754 8899999999999999999999999998876543
No 29
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.12 E-value=1.3e-09 Score=54.66 Aligned_cols=68 Identities=18% Similarity=0.410 Sum_probs=57.8
Q ss_pred HhHHHHHHHHHHhccc--CCCcccHHHHHHHHH-hcCC-CC----HHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 6 QDKADRERVFKRFDLN--GDGKISASELADCLN-ALSS-VS----DEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~--~~g~l~~~e~~~~l~-~~~~-~~----~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
+.+..+-..|..++.. .+|.|+..|++.++. ..+. ++ ..++..++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5677888999999975 479999999999997 4442 44 7889999999999999999999999988754
No 30
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.11 E-value=7.8e-10 Score=59.06 Aligned_cols=70 Identities=27% Similarity=0.440 Sum_probs=62.8
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCC--CCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTD--GDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~--~~g~l~~~ef~~~~~~~ 73 (84)
++++..+++++|..||..++|+|+..++..+++.++ +|++.++.+.+..+.++ +-..++|++|+.++...
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 567889999999999999999999999999999999 69999999999998877 45679999999888654
No 31
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.1e-09 Score=59.67 Aligned_cols=66 Identities=33% Similarity=0.579 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
..+.+..+|+.+|-+++|.|+..+|+.+...++ +++..++..++..++.+++|-|+-++|..++..
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 567889999999999999999999999999999 589999999999999999999999999888764
No 32
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.03 E-value=1.3e-09 Score=61.55 Aligned_cols=74 Identities=24% Similarity=0.526 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC---C---------CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS---S---------VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~---~---------~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
..+++..+|+.||.+++|+|+..|+..++.+.. + .+...+..+|..+|.|.+|.|++++|.......+
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 345566679999999999999999999887643 1 1345678899999999999999999999998888
Q ss_pred HHHHHH
Q 046921 75 GLIKNV 80 (84)
Q Consensus 75 ~~~~~~ 80 (84)
..++.+
T Consensus 178 ~i~~~l 183 (193)
T KOG0044|consen 178 SILRAL 183 (193)
T ss_pred HHHHHh
Confidence 776655
No 33
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.01 E-value=6.4e-09 Score=56.50 Aligned_cols=63 Identities=32% Similarity=0.498 Sum_probs=47.9
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSS-VSDEEVKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
.+.++++++++|..+|++++|.|+.++|+..+.+++. .+.+++..++... +|.|+|--|++++
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmf 90 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMF 90 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHH
Confidence 4679999999999999999999999999999999984 6666666654332 2345555444444
No 34
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.99 E-value=1.2e-08 Score=62.86 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=69.4
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-C-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-S-VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRGLIKNVA 81 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~~~~~~ 81 (84)
..+...+++.+|..+|.+++|.++..++.+.+..+. + ++......++..+|.+.+|.++|.+|.+++..++..+..++
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F 88 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIF 88 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHH
Confidence 346677899999999999999999999999998887 3 55667788999999999999999999999998888777776
Q ss_pred hh
Q 046921 82 KI 83 (84)
Q Consensus 82 ~~ 83 (84)
+.
T Consensus 89 ~~ 90 (463)
T KOG0036|consen 89 QS 90 (463)
T ss_pred hh
Confidence 53
No 35
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.99 E-value=5.7e-09 Score=64.27 Aligned_cols=76 Identities=26% Similarity=0.456 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH-HHHHHH
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG-LIKNVA 81 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~-~~~~~~ 81 (84)
....++.++|...|.++||.|+.+|+...++.++ +.+.+++.++++.+|+++++.|+++++...+..++. .++++.
T Consensus 79 ~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~ 156 (463)
T KOG0036|consen 79 NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIY 156 (463)
T ss_pred HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHH
Confidence 4667888999999999999999999999999999 589999999999999999999999999998876654 355554
No 36
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.93 E-value=9.5e-09 Score=58.12 Aligned_cols=68 Identities=32% Similarity=0.393 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
.......+|+.+|.+++|.|+..|+...++... +..++.+++.|+.+|.+++|.|+.++++.++....
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIY 130 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHH
Confidence 445567889999999999999999888887766 47778888999999999999999999988876543
No 37
>PLN02964 phosphatidylserine decarboxylase
Probab=98.91 E-value=1.8e-08 Score=65.54 Aligned_cols=65 Identities=28% Similarity=0.529 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALSS-VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
...+..+|..+|.+++|.|+..||..++..++. .+.+++..+|+.+|.+++|.|+++|+..++..
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 345777888888888888888888888877663 66777888888888888888888888877765
No 38
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.89 E-value=3.1e-08 Score=56.49 Aligned_cols=75 Identities=27% Similarity=0.364 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcC--CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHHHHHHHHhh
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALS--SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRGLIKNVAKI 83 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~~~~~~~~ 83 (84)
...+...|...|.++.|.|+.+|+.+.+.... ......++-++..+|.+.+|.|+++||..++..+... +++++-
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~W-r~vF~~ 132 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQW-RNVFRT 132 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH-HHHHHh
Confidence 45788999999999999999999999998554 3677889999999999999999999999999887776 555543
No 39
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.89 E-value=1.6e-07 Score=47.23 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=56.2
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHHHhc-----CC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCLNAL-----SS-VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~-----~~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
..+..+-..|..|. ...+.++..||+.++..- .+ ..+..+..++...|.+++|.|+|.||..++.....
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 46677888999998 456799999999999652 11 34678999999999999999999999998876543
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.87 E-value=4.3e-08 Score=63.82 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=57.0
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC--CCCHHH---HHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS--SVSDEE---VKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~--~~~~~~---~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
...+.+++.+.|..+|++++|.+ ++.+++.++ .++..+ ++.++..+|.+++|.|+++||..++...
T Consensus 138 ~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 138 VTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred cHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 34678899999999999999997 888898888 366665 7899999999999999999999988753
No 41
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.87 E-value=4e-08 Score=53.47 Aligned_cols=65 Identities=32% Similarity=0.475 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
.+.+..+|..||.+++|.|....++.+|...+ ..+..++..+++.+-.+..|.++|..|..++..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 56788999999999999999999999999988 599999999999999999999999999999873
No 42
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.83 E-value=1e-08 Score=41.20 Aligned_cols=26 Identities=35% Similarity=0.712 Sum_probs=12.7
Q ss_pred HHHHHHHhcccCCCcccHHHHHHHHH
Q 046921 11 RERVFKRFDLNGDGKISASELADCLN 36 (84)
Q Consensus 11 ~~~~F~~~d~~~~g~l~~~e~~~~l~ 36 (84)
+..+|+.+|++++|+|+.+||..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34445555555555555555544443
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.79 E-value=2.3e-08 Score=40.20 Aligned_cols=28 Identities=39% Similarity=0.775 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 45 EVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 45 ~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
+++.+|+.+|.|++|.|+++||..++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4688999999999999999999998864
No 44
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.70 E-value=4.4e-08 Score=39.87 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=23.2
Q ss_pred HHHHHHHHhcccCCCcccHHHHHHHHH-hcC
Q 046921 10 DRERVFKRFDLNGDGKISASELADCLN-ALS 39 (84)
Q Consensus 10 ~~~~~F~~~d~~~~g~l~~~e~~~~l~-~~~ 39 (84)
+++.+|..+|.+++|+|+.+|+..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467788888888888888888888887 453
No 45
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=50.76 Aligned_cols=71 Identities=32% Similarity=0.566 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcC--CCCHHH----HHHHHHhhcCCCCCceeHHHHHHHHHHcHHHHH
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALS--SVSDEE----VKKMMAEIDTDGDGVISYDEFTAFAEANRGLIK 78 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~--~~~~~~----~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~~~ 78 (84)
.-++.-+|+.+|-+++++|...++...+.++. .++..+ +.+++..+|.+++|++++.+|.+++.+.+..+.
T Consensus 107 dlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFls 183 (189)
T KOG0038|consen 107 DLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLS 183 (189)
T ss_pred HhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHh
Confidence 34556678999999999999999999998887 366655 456788899999999999999999987766543
No 46
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.56 E-value=5e-07 Score=56.63 Aligned_cols=65 Identities=28% Similarity=0.458 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHhcC-----CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCLNALS-----SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
..+..+|+..|.|+.|.|+..||..+...++ ..+.+++.++.+.+|.+++|+|++.||+.++...
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 3466789999999999999999999887654 2678889999999999999999999999987643
No 47
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.51 E-value=6.6e-07 Score=55.59 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
.....+..+|..+|.+++|.|+.+|+.. +..+|..+|.|++|.|+++||...+..
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3456778999999999999999999842 467999999999999999999988764
No 48
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.48 E-value=8.6e-07 Score=62.05 Aligned_cols=70 Identities=23% Similarity=0.549 Sum_probs=62.0
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CC-------CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SV-------SDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~-------~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
+.++..++.-+|.+||.+.+|.++..+|+.+++++| .+ |..++..++...|++.+|+|+..+|..+|..+
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 557788899999999999999999999999999988 33 23478999999999999999999999998754
No 49
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.48 E-value=2e-06 Score=38.71 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 25 KISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 25 ~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
.++..|++.+++.+. .+....+..+|..+|.+++|.++-+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 367899999999988 588899999999999999999999999887764
No 50
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.47 E-value=1.4e-06 Score=46.86 Aligned_cols=64 Identities=30% Similarity=0.545 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
..+.+-+-.+.||++++|.|...+++-++-.+| .++..++..++.-.. |.+|.|+|+.|+..+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 345666778899999999999999999999999 599999999886654 6689999999987653
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.47 E-value=3.8e-07 Score=35.36 Aligned_cols=23 Identities=43% Similarity=0.759 Sum_probs=13.9
Q ss_pred HHHHHHhcccCCCcccHHHHHHH
Q 046921 12 ERVFKRFDLNGDGKISASELADC 34 (84)
Q Consensus 12 ~~~F~~~d~~~~g~l~~~e~~~~ 34 (84)
..+|..+|.+++|.|+.+|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44566666666666666666553
No 52
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.35 E-value=3.7e-07 Score=47.79 Aligned_cols=62 Identities=27% Similarity=0.335 Sum_probs=45.4
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTA 68 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~ 68 (84)
.....+.-.|..+|.+++|.|+..|++.+...+. ++..=++.++..+|.+++|.|++.|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~-~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM-PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS-TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh-hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4566777889999999999999999988766442 4444578899999999999999999864
No 53
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.33 E-value=6.7e-06 Score=52.53 Aligned_cols=68 Identities=22% Similarity=0.494 Sum_probs=59.8
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC----CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSS----VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~----~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
++++...+...|...| +++|+++..++..++..... ...++++.++...+.+.+|.|+|++|+..+..
T Consensus 14 tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 14 TQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred cHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 5678889999999999 99999999999999988763 34788999999999999999999999996553
No 54
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.28 E-value=2.5e-06 Score=33.01 Aligned_cols=25 Identities=44% Similarity=0.841 Sum_probs=21.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 46 VKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 46 ~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
++.+|..+|.|++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999998753
No 55
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.26 E-value=1.6e-06 Score=50.87 Aligned_cols=70 Identities=30% Similarity=0.452 Sum_probs=55.1
Q ss_pred CcHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-C---CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 3 DEEQDKADRERVFKRFDLNGDGKISASELADCLNALS-S---VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 3 ~~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~---~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
.|.....+++.+|.+.|.+.+|+|+..|+++.+..-. . -...+-+..|+..|.+++|+|+|++|.--+..
T Consensus 95 eprrsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 95 EPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred chhHHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 3667889999999999999999999999999876532 1 12233445788889999999999999765543
No 56
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=5.1e-06 Score=50.08 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=58.8
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
+.+...++..++...|.+++|+|+..+++.++.... .....++.+-|...+.+.+|.|+|+++...+..
T Consensus 72 ~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 72 PEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred cchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhh
Confidence 456788999999999999999999999999987765 355666777888999999999999999887653
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=1.1e-05 Score=48.63 Aligned_cols=66 Identities=30% Similarity=0.478 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcC--CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALS--SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
..+-.+.|...|.+++|.++.+||-.++.=-. .+....++..+...|+|++|.|+++||+.=+...
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 34556789999999999999999998884211 2455667888999999999999999998765543
No 58
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.12 E-value=9.4e-06 Score=32.82 Aligned_cols=27 Identities=30% Similarity=0.660 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 45 EVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 45 ~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
+++.+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999887
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=2.6e-05 Score=52.08 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=59.9
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
+.....+.+.+|..+|+...|+++-..-+.+|-..+ ++...+..+|.+.|.|+||+|+-+||+-.|..
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~-Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG-LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhcC-CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 556778889999999999999999999888887644 88999999999999999999999999876653
No 60
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.96 E-value=9.4e-05 Score=41.98 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=22.1
Q ss_pred HHhHHHHHHHHHHhccc-CCCcccHHHHHHHH
Q 046921 5 EQDKADRERVFKRFDLN-GDGKISASELADCL 35 (84)
Q Consensus 5 ~~~~~~~~~~F~~~d~~-~~g~l~~~e~~~~l 35 (84)
..++..+...|.+++.. ++|.++.+++..+.
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~ 60 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGDGYLTKEEFLSIP 60 (187)
T ss_pred HHHHHHHHHHHHHhccccccCccCHHHHHHHH
Confidence 45667777777777777 77777777777665
No 61
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.80 E-value=0.00027 Score=34.81 Aligned_cols=64 Identities=20% Similarity=0.479 Sum_probs=52.4
Q ss_pred HHHHHHHHhcccCCCcccHHHHHHHHHhcCC---CCHHHHHHHHHhhcCC----CCCceeHHHHHHHHHHcH
Q 046921 10 DRERVFKRFDLNGDGKISASELADCLNALSS---VSDEEVKKMMAEIDTD----GDGVISYDEFTAFAEANR 74 (84)
Q Consensus 10 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~d~~----~~g~l~~~ef~~~~~~~~ 74 (84)
++..+|..+.. +.+.++.++|...+..-.+ .+...+..++..+..+ ..+.+++++|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46789999955 7899999999999987663 4688899999888654 478899999999987544
No 62
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.72 E-value=7.3e-05 Score=28.56 Aligned_cols=25 Identities=44% Similarity=0.769 Sum_probs=13.4
Q ss_pred HHHHHHhcccCCCcccHHHHHHHHH
Q 046921 12 ERVFKRFDLNGDGKISASELADCLN 36 (84)
Q Consensus 12 ~~~F~~~d~~~~g~l~~~e~~~~l~ 36 (84)
..+|..+|.+++|.|+..++..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555543
No 63
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00024 Score=45.65 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=59.4
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
++++++..-+-|+...+|..|+|+-.--++++.+. .++-.++..+|.+.|-+.+|.|++.||...+-
T Consensus 226 T~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS-klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 226 TPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS-KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred CHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc-cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 56889999999999999999999988888887663 47888999999999999999999999988764
No 64
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.57 E-value=0.00025 Score=32.03 Aligned_cols=31 Identities=32% Similarity=0.665 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHh
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNA 37 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~ 37 (84)
..+++..+|..+|++++|.|+..||..++..
T Consensus 23 s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 23 SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3456899999999999999999999988753
No 65
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.53 E-value=0.00023 Score=27.04 Aligned_cols=27 Identities=37% Similarity=0.710 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 46 VKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 46 ~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
++.+|..++.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999888753
No 66
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.43 E-value=0.00048 Score=32.24 Aligned_cols=30 Identities=30% Similarity=0.677 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHH
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCL 35 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l 35 (84)
.....+..+|..+|++++|.|+..||..++
T Consensus 37 ~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 37 ESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 445577888999999999999999998764
No 67
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00053 Score=43.32 Aligned_cols=66 Identities=30% Similarity=0.477 Sum_probs=44.1
Q ss_pred HHHHHHHHhcccCCCcccHHHHHHHHHhcC-----CC-----------CHHHHHHHH--HhhcCCCCCceeHHHHHHHHH
Q 046921 10 DRERVFKRFDLNGDGKISASELADCLNALS-----SV-----------SDEEVKKMM--AEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 10 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-----~~-----------~~~~~~~~~--~~~d~~~~g~l~~~ef~~~~~ 71 (84)
.++-+|..||.|++|-|+.+||..++.... +. ...++...+ .-+-.++++++++++|..++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 345679999999999999999998874321 00 111222222 224567888899998888876
Q ss_pred HcHH
Q 046921 72 ANRG 75 (84)
Q Consensus 72 ~~~~ 75 (84)
....
T Consensus 314 ~Lq~ 317 (489)
T KOG2643|consen 314 NLQE 317 (489)
T ss_pred HHHH
Confidence 6544
No 68
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.17 E-value=0.0045 Score=39.63 Aligned_cols=69 Identities=28% Similarity=0.519 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC--CCC------------------------------------------
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS--SVS------------------------------------------ 42 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~--~~~------------------------------------------ 42 (84)
....+..-|+.+|....|+|+...+..++.... ++|
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 345567889999999999999999988887532 111
Q ss_pred ----HHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 43 ----DEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 43 ----~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
...+..+|+..|.|++|.|+.+||..++.....
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 012455789999999999999999998765433
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0049 Score=41.83 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=58.2
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
+++++++-...|..+- .+.|+|+-.+-+.++-..+ ++...+.++|.+.|.|.||+++..||...|.....
T Consensus 11 T~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~-LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~l 80 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSG-LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKL 80 (1118)
T ss_pred chHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcC-CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHH
Confidence 5677777777888763 5679999999998887655 88888999999999999999999999998876544
No 70
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.07 E-value=0.0032 Score=41.26 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=63.5
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.+++....+..|..+|.+..|+++..++..+++..+ +.+...+.+.+...+.+.+|.+...+|..++...
T Consensus 588 ~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 588 TPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 567888888999999999999999999999999988 6899999999999998889999999999988754
No 71
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=97.00 E-value=0.0018 Score=46.65 Aligned_cols=57 Identities=19% Similarity=0.470 Sum_probs=50.2
Q ss_pred HHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 14 VFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 14 ~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
.|..+|+++.|.|+..+|.+++......++.++.-++.....+.+..++|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 466789999999999999999987666888999999999999999999999997654
No 72
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.99 E-value=0.0038 Score=39.84 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhh----cCCCCCceeHHHHHHHHHHc
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEI----DTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~----d~~~~g~l~~~ef~~~~~~~ 73 (84)
...+-..|-.+|++++|.|+.++++...... ++.-.+..+|... ....+|.++|++|+-++.+.
T Consensus 277 f~viy~kFweLD~Dhd~lidk~~L~ry~d~t--lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 277 FYVIYCKFWELDTDHDGLIDKEDLKRYGDHT--LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred HHHHHHHHhhhccccccccCHHHHHHHhccc--hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 3344455888899999999999988765322 4566777888733 33467889999998877653
No 73
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.98 E-value=0.0034 Score=28.28 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
+...+..+|...|++++|.+..+|+..+++.+
T Consensus 19 ~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp -HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 45567789999999999999999999988764
No 74
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.77 E-value=0.0035 Score=38.57 Aligned_cols=70 Identities=24% Similarity=0.293 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~ 76 (84)
....++-.|..|+..-||.+...++.-+++...+.....+--+|...+...+|+|.+.+|..++..+++.
T Consensus 294 t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 294 TPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNL 363 (412)
T ss_pred cHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhcccCcceeHHHHHHHHHhCchh
Confidence 3445666777777777777777777777766544444445556777777778888888888877655543
No 75
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.63 E-value=0.042 Score=30.34 Aligned_cols=61 Identities=11% Similarity=0.325 Sum_probs=45.9
Q ss_pred HHHHHhcccCCCcccHHHHHHHHHhcC----CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 13 RVFKRFDLNGDGKISASELADCLNALS----SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 13 ~~F~~~d~~~~g~l~~~e~~~~l~~~~----~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
..|..+.+.....++...|.++|+..+ ..+...+.-+|..+...+...|+|++|..+|...
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 344455556667899999999999877 2677888899999877667779999999988654
No 76
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.57 E-value=0.0066 Score=30.52 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHhcC
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCLNALS 39 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~ 39 (84)
..+..+++.+|.+++|.|+.+||..++..+.
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 6789999999999999999999998887653
No 77
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.55 E-value=0.012 Score=39.72 Aligned_cols=70 Identities=23% Similarity=0.411 Sum_probs=57.6
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
......++..+|...|++.+|.++..+...++..+. .+....++.+|+..+..+++.+..++|..+....
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 345667888999999999999999999999998877 4777778888888877788899988887766543
No 78
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.50 E-value=0.0078 Score=30.40 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 44 EEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 44 ~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
..+..+|..+|.+++|.|+.+++..++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 39 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS 39 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc
Confidence 346778999999999999999999988654
No 79
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0022 Score=40.72 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=43.5
Q ss_pred cccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 19 DLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 19 d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
+.+.+|.|+..|+.-++-.+. .|+...+-.|+.+|.|++|.|+.+||..+...
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS-~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~l 261 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLS-IPERNFRIAFKMFDLDGNGEIDKEEFETVQQL 261 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHc-cCcccceeeeeeeecCCCCcccHHHHHHHHHH
Confidence 345689999999888777666 56667778899999999999999999887643
No 80
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.029 Score=29.70 Aligned_cols=56 Identities=29% Similarity=0.529 Sum_probs=41.1
Q ss_pred HHHHHhcccCCCcccHHHHHHHHHhc------C--C---CCHHHHHH----HHHhhcCCCCCceeHHHHHH
Q 046921 13 RVFKRFDLNGDGKISASELADCLNAL------S--S---VSDEEVKK----MMAEIDTDGDGVISYDEFTA 68 (84)
Q Consensus 13 ~~F~~~d~~~~g~l~~~e~~~~l~~~------~--~---~~~~~~~~----~~~~~d~~~~g~l~~~ef~~ 68 (84)
..|...|-+++|.++--|+.+++.-. + + +++.++.. +++.-|.+++|.|+|-||..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 46889999999999999998877421 1 1 23445444 45556788999999999964
No 81
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.36 E-value=0.0085 Score=37.18 Aligned_cols=65 Identities=25% Similarity=0.222 Sum_probs=53.5
Q ss_pred HHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 5 EQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 5 ~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
+.-...+.-+|.++|.+.+|.|+..|++.+... ..+.=++.+|+.+|...+|.|+-.|+...+.+
T Consensus 246 p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld---knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 246 PICKDSLGWMFNKLDTNYDLLLDQSELRAIELD---KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred cchhhhhhhhhhccccccccccCHHHhhhhhcc---CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 356778899999999999999999999877643 33455778999999999999999998776654
No 82
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.30 E-value=0.012 Score=29.63 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS 39 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~ 39 (84)
....+..++..+|.+++|.|+.+||..++..+.
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 445788999999999999999999999887653
No 83
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.25 E-value=0.0076 Score=27.96 Aligned_cols=27 Identities=37% Similarity=0.636 Sum_probs=23.0
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 47 KKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 47 ~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
+.+|..+|.+++|.|+.+++..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 467888999999999999999888653
No 84
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.08 E-value=0.017 Score=29.02 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
+...+..++..+|.+++|.|+.+||..++..+
T Consensus 50 ~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 50 DPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34678889999999999999999999888765
No 85
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.02 E-value=0.021 Score=28.58 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
..+.+.++++.+|.+++|.|+.++|..++..+
T Consensus 49 t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 49 QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 45678889999999999999999998877654
No 86
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.00 E-value=0.019 Score=28.62 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
...+..+|..+|.+++|.|+.++|..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5778899999999999999999999888654
No 87
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.94 E-value=0.017 Score=29.19 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCLNALS 39 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~ 39 (84)
.+...+.+++..+|.++||.|+.+||..++..+.
T Consensus 45 ~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 45 NDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3567788999999999999999999999886653
No 88
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.85 E-value=0.026 Score=28.23 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
..+.+..+|..+|++++|.|+.++|..++..+
T Consensus 50 s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 50 DADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 45678899999999999999999999888764
No 89
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.82 E-value=0.022 Score=28.65 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS 39 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~ 39 (84)
..+.+..++..+|.+++|.|+.++|..++...+
T Consensus 49 s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 49 DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456788899999999999999999998887654
No 90
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.79 E-value=0.0087 Score=36.92 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHHHHHHHhcccCCCcccHHHHHHHHHhcCC--CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 10 DRERVFKRFDLNGDGKISASELADCLNALSS--VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 10 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
.+.-.|..+|.++++-|...|++-+=+.+.. .+..=.+.+++.+|.+++..|++.|+...+....
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 3455699999999999999987765544431 3444567899999999999999999998876543
No 91
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.79 E-value=0.022 Score=25.27 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=23.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 46 VKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 46 ~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
+..+|..+|.+++|.|++++|..++...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 4578889999999999999999988653
No 92
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.79 E-value=0.051 Score=26.82 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=24.5
Q ss_pred HHHHHHHhhcC--CCCCceeHHHHHHHHHH
Q 046921 45 EVKKMMAEIDT--DGDGVISYDEFTAFAEA 72 (84)
Q Consensus 45 ~~~~~~~~~d~--~~~g~l~~~ef~~~~~~ 72 (84)
.+..+|..+|. +++|.|+.+++..++..
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 46678999999 89999999999998864
No 93
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.64 E-value=0.14 Score=35.54 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=56.1
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC-CC--H---HHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSS-VS--D---EEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~-~~--~---~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
++....+++..|..++....|..+.+++..++..++. .- . .++..+++.-+.+..|.|++.+|...|.+...
T Consensus 742 sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred hHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 4567889999999999999999999999999999883 22 1 23444555556666789999999988876544
No 94
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.55 E-value=0.048 Score=30.10 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=43.8
Q ss_pred HHHHHhcccCCCcccHHHHHHHHHhcCC--CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 13 RVFKRFDLNGDGKISASELADCLNALSS--VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 13 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
++...+..++.|-++..++..+++..+. +-...+.-.|+.+|-++++.|.-++....+..
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHH
Confidence 4455666789999999999988877664 33445556788888899988887777665543
No 95
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.43 E-value=0.04 Score=29.07 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHH
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCL 35 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l 35 (84)
..+..+|..+|.+++|.|+..|+...+
T Consensus 80 ~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 80 HCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345678999999999999999999988
No 96
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.34 E-value=0.16 Score=33.39 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=41.0
Q ss_pred HHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 16 KRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 16 ~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
...|...||.|+.+||...-..+. .+.......|..+|+.++|.++++++..++..
T Consensus 81 ~iaD~tKDglisf~eF~afe~~lC-~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 81 SIADQTKDGLISFQEFRAFESVLC-APDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhhhhcccccccHHHHHHHHhhcc-CchHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 345677888999998876543332 45556667888889988999999988877653
No 97
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.29 E-value=0.058 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
....+.++++.+|++++|.|+.++|..++...
T Consensus 49 ~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 49 EQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45668899999999999999999998877653
No 98
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.012 Score=40.47 Aligned_cols=69 Identities=25% Similarity=0.357 Sum_probs=59.2
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.+.+...+.++|...|.+.+|.|+..+....+.. .+++...+.+.|...+..++|.+++.+|...+..+
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~-~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP-FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCccccccccccccc-CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 4567888889999999999999999999888866 44888889999999999999999999887765443
No 99
>PF14658 EF-hand_9: EF-hand domain
Probab=94.77 E-value=0.076 Score=25.27 Aligned_cols=32 Identities=9% Similarity=0.348 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHhcccCC-CcccHHHHHHHHHh
Q 046921 6 QDKADRERVFKRFDLNGD-GKISASELADCLNA 37 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~-g~l~~~e~~~~l~~ 37 (84)
.+..++..+...+|+++. |.|+.++|..+|+.
T Consensus 32 p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 32 PEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 345588999999999988 99999999988864
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.70 E-value=0.24 Score=28.03 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-C---------------------------------------------
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS-S--------------------------------------------- 40 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~--------------------------------------------- 40 (84)
....+++-..-+|+|+||.|..-|-..-++.++ +
T Consensus 5 ~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 5 NMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred cccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 344556667778999999998888766555432 1
Q ss_pred --------CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 41 --------VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 41 --------~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
..++..+.+|..+.+.+.+.+++.|...++....
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 1244577889998888888899999988887643
No 101
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.70 E-value=0.08 Score=35.16 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=47.2
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCC---HHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVS---DEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~---~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
++.-++.+..+|..+|.++||.++..|++.+.......+ ..+. ..-..+..|.+++..|+..|.
T Consensus 310 s~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~----~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 310 SPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK----DSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred cHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc----ccceecccceeehhhHHHHHH
Confidence 456788999999999999999999999999998765322 0000 011123678999999988765
No 102
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.53 E-value=0.11 Score=26.90 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
..+.+..++...|.+++|+++.+||..+++..
T Consensus 41 ~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 41 PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 34678899999999999999999999887653
No 103
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.53 E-value=0.13 Score=33.30 Aligned_cols=63 Identities=22% Similarity=0.447 Sum_probs=48.2
Q ss_pred HHHHHHHH----HhcccCCCcccHHHHHHHHHhcCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 9 ADRERVFK----RFDLNGDGKISASELADCLNALSS-VSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 9 ~~~~~~F~----~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
..+.++|. .+-...+|.++..++..++-+... .++..+.-+|+.+|.+++|.|+..+...+..
T Consensus 311 ~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 311 RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred HHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 34567787 333456899999999999877763 5667778899999999999999887655543
No 104
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.43 E-value=0.16 Score=31.59 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHhcCC--CCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCLNALSS--VSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
..++.+|..||.+++|.++..+....+..+.+ .+...++-.|+.++-..+|.+.-.++..++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 67788999999999999999888887776654 4467788899999999999999888877664
No 105
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.13 E-value=0.25 Score=29.67 Aligned_cols=57 Identities=28% Similarity=0.413 Sum_probs=44.3
Q ss_pred HHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q 046921 12 ERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTA 68 (84)
Q Consensus 12 ~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~ 68 (84)
++.=...|.+++|.++.+|+..++.-.. .....++..++..-+.+++.+++.++.+.
T Consensus 284 kEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 284 KEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 3334467899999999999998864333 25566778888888999999999998765
No 106
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.00 E-value=0.1 Score=25.07 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcC-------CCCCceeHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDT-------DGDGVISYDEFTA 68 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~-------~~~g~l~~~ef~~ 68 (84)
..+++...|+.+ .++.++|+..+|+..+. +. .+.-+...+.. ...|.++|..|..
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-----pe-~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-----PE-QAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS------CC-CHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-----cH-HHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 446788999998 67889999999997752 11 12444444432 2236789988864
No 107
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.17 E-value=0.39 Score=35.74 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHhcC--C-CCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCLNALS--S-VSDEEVKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~--~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
-.+.++....||+.+|+|+..++-.+|-+.. + .+..++...|+..+. +...|+.++....|
T Consensus 2296 p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2296 PEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred hhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcC
Confidence 3567778889999999999999999987655 3 667789999999888 56667776654433
No 108
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=93.13 E-value=0.28 Score=31.20 Aligned_cols=32 Identities=38% Similarity=0.553 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
+......+|..+|.+++|.|+.+||...+...
T Consensus 355 E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 355 EWLGSDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 33345789999999999999999999988754
No 109
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.53 E-value=0.8 Score=30.33 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCC-ceeHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDG-VISYDEFTA 68 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g-~l~~~ef~~ 68 (84)
+.+.....|+..|+.++|.|+.=+++..+.... .+....++..+.......++ ++++..|..
T Consensus 177 ~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 177 QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 345567889999999999999999998887655 34555566655554443343 477766644
No 110
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.65 E-value=1.5 Score=24.89 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC---C-----CHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALSS---V-----SDEEVKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~---~-----~~~~~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
-+++.++|.+++..+.+.++..|+..+++.-.. + ..-|+..++..+ .+.+|.+..++...++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 478999999999999999999999999986332 1 122333334333 4678999888776554
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.54 E-value=1 Score=22.76 Aligned_cols=63 Identities=11% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhc-------C-----CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNAL-------S-----SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~-------~-----~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.++.+-+|..+ .|++|.++...+..+++.+ + +..+..++.+|.... .+..|+.++|+.-+...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 36788899988 6889999999999888653 2 235666777777752 45679999999887654
No 112
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=90.80 E-value=3.3 Score=28.04 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=28.5
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALS 39 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~ 39 (84)
.+..+..+.++|...|.+.+|.++-.|+-..-+.+.
T Consensus 190 kp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF 225 (625)
T KOG1707|consen 190 KPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCF 225 (625)
T ss_pred cHHHHHHHHHHHhhhccccccccchhhhhHHHHHhc
Confidence 345677889999999999999999988876654443
No 113
>PLN02228 Phosphoinositide phospholipase C
Probab=90.39 E-value=3.5 Score=27.77 Aligned_cols=65 Identities=15% Similarity=0.362 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC---CCHHHHHHHHHhhcCC----CCCceeHHHHHHHHHHc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSS---VSDEEVKKMMAEIDTD----GDGVISYDEFTAFAEAN 73 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~d~~----~~g~l~~~ef~~~~~~~ 73 (84)
-..++..+|..+.. ++.++.++|..++....+ .....+..++..+... ..|.++++.|..++...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 45667778887754 368999999999988763 4456678888887643 34679999999988643
No 114
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.17 E-value=3.1 Score=28.14 Aligned_cols=63 Identities=11% Similarity=0.283 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC---CCHHHHHHHHHhhcC-CCCCceeHHHHHHHHHH
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALSS---VSDEEVKKMMAEIDT-DGDGVISYDEFTAFAEA 72 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~d~-~~~g~l~~~ef~~~~~~ 72 (84)
..++..+|..+.. ++.++.++|..+|....+ .+.+.+..++..+.. ...+.++++.|..++..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3477888888754 479999999999988763 356677778877532 23567999999998864
No 115
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=89.65 E-value=0.082 Score=30.64 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=40.8
Q ss_pred HHHhcc-cCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 15 FKRFDL-NGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 15 F~~~d~-~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
|..+|+ ..+|+++..|+.-+ ++.-.+...=+..+|..+|.+++|.|+++++...+....
T Consensus 193 f~qld~~p~d~~~sh~el~pl-~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPL-RAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred eccccCCCccccccccccccc-cCCcccHHhhchhhhhcccCCCCCceeHHHhhcccCcch
Confidence 556665 45889888876432 221113345567799999999999999999987765443
No 116
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=0.83 Score=29.39 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=40.7
Q ss_pred HHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 046921 13 RVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAF 69 (84)
Q Consensus 13 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~ 69 (84)
++|-.+. .-+|+|+-..-++.+... .+++..+-++|+..|.+.+|.++-+||.-.
T Consensus 448 e~fy~l~-p~~gk~sg~~ak~~mv~s-klpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 448 EIFYTLS-PVNGKLSGRNAKKEMVKS-KLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hhhhccc-ccCceeccchhHHHHHhc-cCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 4444433 246777777667666542 478888899999999999999999999643
No 117
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.74 E-value=6.7 Score=26.72 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC----CCHHHHHHHHHhhcC-------CCCCceeHHHHHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSS----VSDEEVKKMMAEIDT-------DGDGVISYDEFTAFAEA 72 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~----~~~~~~~~~~~~~d~-------~~~g~l~~~ef~~~~~~ 72 (84)
-..++..+|..+..++ +.++.++|..+|....+ .+...+..++..+.. -..+.++++.|..++..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4567888999985444 89999999999988662 245566666654421 12456999999998764
No 118
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=87.73 E-value=1.3 Score=26.02 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 46 VKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 46 ~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
...+|+.+|.+.+|.|++.|...+|-..
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHh
Confidence 4568999999999999999999988654
No 119
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=87.69 E-value=0.81 Score=28.52 Aligned_cols=59 Identities=24% Similarity=0.467 Sum_probs=41.5
Q ss_pred HHHHHhcccCCCcccHHHHHHHHHh----cCCC--CHHH-----------HHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 13 RVFKRFDLNGDGKISASELADCLNA----LSSV--SDEE-----------VKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 13 ~~F~~~d~~~~g~l~~~e~~~~l~~----~~~~--~~~~-----------~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
-.|...|.+++|.++..++..++.. ...+ ..+. -..+++..|.+.+.-|+.++|+..-.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 3567778999999999999887642 2211 1111 12367888889999999999987654
No 120
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=87.46 E-value=1.2 Score=30.28 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=23.6
Q ss_pred HHHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCC
Q 046921 11 RERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGD 58 (84)
Q Consensus 11 ~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~ 58 (84)
+.++|+.+|.+.+|.|+..++...+..+- +-....+.-++..++..++
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc
Confidence 34556666666666666555555554432 2222333344444444444
No 121
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.22 E-value=0.41 Score=33.41 Aligned_cols=67 Identities=22% Similarity=0.358 Sum_probs=55.7
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.....+...|+..|+..+|.|+..+-...+...+ ++...+-++|...+..+.|.++..+|+..+...
T Consensus 8 ~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~-L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlv 74 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG-LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLV 74 (847)
T ss_pred CccchHHHhhhccCcccCCcccHHHhhhhhhccc-cchhhhhccccccccccCCccccccccccchHh
Confidence 4456778899999999999999998887776644 778888899999999999999999988766543
No 122
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=86.84 E-value=1.2 Score=23.34 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=17.6
Q ss_pred HHHHHHHhcccCCCcccHHHHHH
Q 046921 11 RERVFKRFDLNGDGKISASELAD 33 (84)
Q Consensus 11 ~~~~F~~~d~~~~g~l~~~e~~~ 33 (84)
+...|...|.+++|.|+..|+..
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHcc
Confidence 46678999999999999998754
No 123
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.71 E-value=1.5 Score=23.97 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=26.0
Q ss_pred CcccHHHHHHHHHhcCCCCHHHHHHHHHhhcC-------CCCCceeHHHHHHHHHH
Q 046921 24 GKISASELADCLNALSSVSDEEVKKMMAEIDT-------DGDGVISYDEFTAFAEA 72 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~-------~~~g~l~~~ef~~~~~~ 72 (84)
+.|+..||.++-.-.. .+...+..++..+.. +..+.|+|+.|..+|..
T Consensus 6 ~~lsp~eF~qLq~y~e-ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp S-S-HHHHHHHHHHHH-H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 5678888877654332 233355566665532 34557999999888763
No 124
>PLN02952 phosphoinositide phospholipase C
Probab=85.76 E-value=9.1 Score=26.14 Aligned_cols=65 Identities=22% Similarity=0.329 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCC---CCHHHHHHHHHhhc-------CCCCCceeHHHHHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSS---VSDEEVKKMMAEID-------TDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~d-------~~~~g~l~~~ef~~~~~~ 72 (84)
...++..+|..+.. +.+.++.++|..++....+ .+...+..++..+- ....+.++++.|..++..
T Consensus 36 ~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 36 PPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 45678888888854 3368999999999988663 34555666654331 112345889999888763
No 125
>PLN02952 phosphoinositide phospholipase C
Probab=84.39 E-value=6.6 Score=26.76 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=39.9
Q ss_pred CCCcccHHHHHHHHHhcC---CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 22 GDGKISASELADCLNALS---SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 22 ~~g~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
..|.++..++..+.+.+. ..+..++..+|..+..++ +.++.++|..++..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHH
Confidence 458999999988877664 246789999999987544 67999999998864
No 126
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=84.38 E-value=1.8 Score=23.01 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 41 VSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 41 ~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
++.++++.+|..+--+..|.|.|-+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5677889999999999999999999987665
No 127
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=83.96 E-value=4 Score=20.58 Aligned_cols=51 Identities=24% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCCcccHHHHHHHHHhc---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 22 GDGKISASELADCLNAL---SSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 22 ~~g~l~~~e~~~~l~~~---~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
.||.++..|...+-..+ .+.+..+...++..+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 36777777766554332 2356666667776666555555677777666553
No 128
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=82.71 E-value=2.9 Score=18.08 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHHhcc-c-CCCcccHHHHHHHHHh
Q 046921 6 QDKADRERVFKRFDL-N-GDGKISASELADCLNA 37 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~-~-~~g~l~~~e~~~~l~~ 37 (84)
..+..+-.+|..|.. + ....++..|++.++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345566777777753 2 3467888888888764
No 129
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=81.69 E-value=6.3 Score=21.18 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcccC--CCcccHHHHHHHHHhcC-------C-CCH-----------HHHHHHHHhhcCCCCCceeHHHH
Q 046921 8 KADRERVFKRFDLNG--DGKISASELADCLNALS-------S-VSD-----------EEVKKMMAEIDTDGDGVISYDEF 66 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~--~g~l~~~e~~~~l~~~~-------~-~~~-----------~~~~~~~~~~d~~~~g~l~~~ef 66 (84)
...+.++|+....+. +..++..++..++..+. + ..+ --+..++..+|.+++|.|..-.|
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 445667788776533 56799999998887643 1 111 11456889999999999999888
Q ss_pred HHHHH
Q 046921 67 TAFAE 71 (84)
Q Consensus 67 ~~~~~ 71 (84)
...+.
T Consensus 120 KvaL~ 124 (127)
T PF09068_consen 120 KVALI 124 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 130
>PLN02223 phosphoinositide phospholipase C
Probab=79.95 E-value=16 Score=24.71 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHH---HhcC---CCCHHHHHHHHHhhcCC--------CCCceeHHHHHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCL---NALS---SVSDEEVKKMMAEIDTD--------GDGVISYDEFTAFAEA 72 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l---~~~~---~~~~~~~~~~~~~~d~~--------~~g~l~~~ef~~~~~~ 72 (84)
.-+.++.+|..+. .+.|.++...+..++ .... ..+....+.++...-.. ..+.++++.|..++..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4466788898884 667889999999988 4333 24556666666654321 2356999999998865
No 131
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=79.94 E-value=6.6 Score=20.32 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcC---CCCCceeHHHHHHHHHHcHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDT---DGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~---~~~g~l~~~ef~~~~~~~~~ 75 (84)
.+..+..-|..+.. +|.|+...|.+++-. +-+.+-..++|..+.. -....|+.++...++.....
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM--~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGM--KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCC--cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 46777888888776 999999999988732 2344555566655432 22567999999888876543
No 132
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=77.47 E-value=22 Score=25.82 Aligned_cols=65 Identities=15% Similarity=0.368 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHhcCC-----------CCHHHHHHHHHhhcCC----CCCceeHHHHHHHHHHc
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCLNALSS-----------VSDEEVKKMMAEIDTD----GDGVISYDEFTAFAEAN 73 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~-----------~~~~~~~~~~~~~d~~----~~g~l~~~ef~~~~~~~ 73 (84)
-++.++|..+..+..-+++..+|..++..-.. .....+..++..+..+ .+|.++.+.|+.++...
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 46778999988888889999999999976431 2355677888888764 47889999999988653
No 133
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.33 E-value=3.7 Score=26.35 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS 39 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~ 39 (84)
-...+++.|..+|+.+.|+|+..-++.++....
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 356789999999999999999999999998876
No 134
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.00 E-value=10 Score=20.98 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=41.6
Q ss_pred HHHHHHhcccCCCcccHHHHH---HHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 12 ERVFKRFDLNGDGKISASELA---DCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 12 ~~~F~~~d~~~~g~l~~~e~~---~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.-+|...+. ||.++..|.. .+++...+.+..++..++.....-+.-.+++-.|...+.++
T Consensus 33 ~Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 33 ALLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 356776655 4555655544 44555456888888888888887777788888888877743
No 135
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=76.44 E-value=9.1 Score=20.06 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=32.7
Q ss_pred HHhcccCCCcccHHHHHHHHHhcC----------C-CCHHHHHHHHHhhcCCCCCceeHH
Q 046921 16 KRFDLNGDGKISASELADCLNALS----------S-VSDEEVKKMMAEIDTDGDGVISYD 64 (84)
Q Consensus 16 ~~~d~~~~g~l~~~e~~~~l~~~~----------~-~~~~~~~~~~~~~d~~~~g~l~~~ 64 (84)
+.||+..+.+|+.++++.+++.-. . .+...+-+++-.-..++...++..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 357888899999999999987632 1 344455556666555555555554
No 136
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=75.40 E-value=24 Score=24.89 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
..++..+|+..+..+++.+...++..+.......+ ++..+|..+..+ .+.++.++...++.
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp--ev~~~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP--EVYFLFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc--hHHHHHHHHhCC-CCccCHHHHHHHHH
Confidence 34566778877888899999999999888776433 677777776655 77788777766654
No 137
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=74.05 E-value=17 Score=25.17 Aligned_cols=30 Identities=7% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 44 EEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 44 ~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.-+..+|...|.+++|.|+|.++++-+...
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 346679999999999999999999877654
No 138
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.58 E-value=3.8 Score=30.99 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=49.0
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCC-----CHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSV-----SDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~-----~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
...+.+.+.++...+|++..|.|...+++..++.+.++ +... +.+.-.+....+|.|.+.+-+.++..
T Consensus 1412 s~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1412 SEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 34678899999999999999999999999999987631 1111 22323344456777888877666653
No 139
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.97 E-value=5.3 Score=14.49 Aligned_cols=13 Identities=62% Similarity=1.035 Sum_probs=6.5
Q ss_pred ccCCCcccHHHHH
Q 046921 20 LNGDGKISASELA 32 (84)
Q Consensus 20 ~~~~g~l~~~e~~ 32 (84)
.+++|.++.-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 4455555555443
No 140
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=63.54 E-value=9.9 Score=15.24 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=12.4
Q ss_pred CCceeHHHHHHHHHHcHHH
Q 046921 58 DGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 58 ~g~l~~~ef~~~~~~~~~~ 76 (84)
.|.|++++++.+..+....
T Consensus 2 ~~~i~~~~~~d~a~rv~~f 20 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNF 20 (33)
T ss_pred CceecHHHHHHHHHHHHHH
Confidence 4667777777776655443
No 141
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=62.59 E-value=17 Score=17.74 Aligned_cols=47 Identities=11% Similarity=0.293 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCC
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTD 56 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~ 56 (84)
....++.+...- ...|+|+..++..++.... .+...+..++..+...
T Consensus 5 ~~~~i~~Li~~g--K~~G~lT~~eI~~~L~~~~-~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 5 YEEAIKKLIEKG--KKKGYLTYDEINDALPEDD-LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHHHH--HHHSS-BHHHHHHH-S-S----HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHH--hhcCcCCHHHHHHHcCccC-CCHHHHHHHHHHHHHC
Confidence 445555554442 3468999999999886433 5667777777766543
No 142
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=61.32 E-value=25 Score=19.57 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHhcccCCCcccHHHHHHHHHh
Q 046921 6 QDKADRERVFKRFDLNGDGKISASELADCLNA 37 (84)
Q Consensus 6 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~ 37 (84)
...+.+.......|..+.++++.+++|.++-.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 45556666667777778888999999998754
No 143
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=59.66 E-value=19 Score=17.28 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 25 KISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 25 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
.++...+-.++... .+......+...++.=..+.|+-++|+..+...-+
T Consensus 8 ~~~F~~L~~~l~~~--l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 8 WMPFPMLFSALSKH--LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred cccHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 34444444444332 56666677777776666788999999988876544
No 144
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.40 E-value=17 Score=24.58 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
.+.++..++...|.++||.++..||-.++...
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 46778889999999999999999999887653
No 145
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=56.84 E-value=9.4 Score=18.09 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=19.5
Q ss_pred HHhcccCCCcccHHHHHHHHHhc
Q 046921 16 KRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 16 ~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
+.||+..+.+|+.++++++++.-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g 32 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREG 32 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCC
Confidence 35788899999999999999863
No 146
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=53.89 E-value=26 Score=20.58 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=21.9
Q ss_pred cCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHH
Q 046921 21 NGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFT 67 (84)
Q Consensus 21 ~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~ 67 (84)
+=+|.|+.++....+..-.++++.. ...+.-.++.+++.+..
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~e~k-----~l~~~vls~tiS~rd~~ 50 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPGEWK-----ALKDGVLSKTISFRDGF 50 (220)
T ss_pred cCCCceEecchhHHHHhccCchHHH-----HHHHHHhhCceeHHHHH
Confidence 3467788777777665433333322 22233335566666533
No 147
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=52.63 E-value=24 Score=16.31 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=23.4
Q ss_pred CcccHHHHHHHHHhcCC-CCHHHHHHHHHhhc
Q 046921 24 GKISASELADCLNALSS-VSDEEVKKMMAEID 54 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d 54 (84)
..++.+|+...+..+.. ++..++..+|...-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35788899999988884 77777777776654
No 148
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=52.31 E-value=32 Score=21.85 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHHh------cccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 046921 6 QDKADRERVFKRF------DLNGDGKISASELADCLNALSSVSDEEVKKMMAEI 53 (84)
Q Consensus 6 ~~~~~~~~~F~~~------d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~ 53 (84)
++.++|+.+|+++ |++.+..-..++|+++=.++.-++..+.++....+
T Consensus 28 Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 28 ASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 5667777787765 67777888888888888777656666666655443
No 149
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=52.29 E-value=34 Score=22.06 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHcH
Q 046921 43 DEEVKKMMAEIDTDGDGVISYDEFTAFAEANR 74 (84)
Q Consensus 43 ~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~ 74 (84)
..++-+||+.+|.+.++.|+..|...+.....
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ldkn 280 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELDKN 280 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhccCc
Confidence 56788999999999999999999877665443
No 150
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=51.28 E-value=32 Score=17.30 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=34.4
Q ss_pred CcccHHHHHHHHHhcCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 24 GKISASELADCLNALSS-VSDEEVKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
-.++..+++..+....+ ....+...+=...|...+++|+.=||-...
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 56999999999999885 444555556666788889999988775543
No 151
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=49.73 E-value=45 Score=18.59 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=27.6
Q ss_pred CCCcHHhHHHHHHHHHHhcccC-------------CCcccHHHHHHHHHhcCCCCHHHH
Q 046921 1 MADEEQDKADRERVFKRFDLNG-------------DGKISASELADCLNALSSVSDEEV 46 (84)
Q Consensus 1 ~~~~~~~~~~~~~~F~~~d~~~-------------~g~l~~~e~~~~l~~~~~~~~~~~ 46 (84)
|+.++....++.+++..+...+ .|+|+.+-+..+-..++ .+..++
T Consensus 1 ~~~~~~~~~~i~~ii~~y~~~~~~li~~L~~vQ~~~G~Ip~e~~~~iA~~l~-v~~~~V 58 (156)
T PRK05988 1 MPDEPWDAARIAAIIAEHKHLEGALLPILHAIQDEFGYVPEDAVPVIAEALN-LSRAEV 58 (156)
T ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CCHHHH
Confidence 5666677777777777775332 56777666666665555 343333
No 152
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=47.00 E-value=27 Score=15.22 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=29.2
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHh
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAE 52 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~ 52 (84)
+..+...+...|.. +.+.+..+...+...++ ++...|...|..
T Consensus 8 ~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~-l~~~qV~~WF~n 50 (59)
T cd00086 8 TPEQLEELEKEFEK-----NPYPSREEREELAKELG-LTERQVKIWFQN 50 (59)
T ss_pred CHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 45667777777877 44677777777777665 666666666543
No 153
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=46.01 E-value=75 Score=20.05 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=5.3
Q ss_pred CCHHHHHHHHHh
Q 046921 41 VSDEEVKKMMAE 52 (84)
Q Consensus 41 ~~~~~~~~~~~~ 52 (84)
++.++.-.+++.
T Consensus 303 itReeal~~v~~ 314 (343)
T TIGR03573 303 ITREEAIELVKE 314 (343)
T ss_pred CCHHHHHHHHHH
Confidence 444444444444
No 154
>PF14164 YqzH: YqzH-like protein
Probab=45.03 E-value=36 Score=16.14 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=21.8
Q ss_pred HHHHHHHHHhccc-CCCcccHHHHHHHHHhc
Q 046921 9 ADRERVFKRFDLN-GDGKISASELADCLNAL 38 (84)
Q Consensus 9 ~~~~~~F~~~d~~-~~g~l~~~e~~~~l~~~ 38 (84)
.-+++.|+++..+ ..-.++..|++.+...+
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 3457788888776 55778888888777654
No 155
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=44.81 E-value=49 Score=17.54 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=32.7
Q ss_pred HHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhc
Q 046921 13 RVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEID 54 (84)
Q Consensus 13 ~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d 54 (84)
..|..+...++...+..++++++.+.+ ......++.++....
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 455666677777889999999999988 477778888877764
No 156
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=43.86 E-value=27 Score=16.09 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=18.7
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHH
Q 046921 49 MMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 49 ~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
++..+.+..+|..++|.+..+-..
T Consensus 19 ~yhLYrsek~G~rdYEKY~~LAL~ 42 (56)
T TIGR02736 19 IYHLYRSQKKGERDYEKYANLALN 42 (56)
T ss_pred HHHhhhhhcccccCHHHHhhhhcc
Confidence 556677788999999999887653
No 157
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=40.89 E-value=13 Score=18.79 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=0.0
Q ss_pred cCCCCCceeHHHHHHHHHHcHHHH
Q 046921 54 DTDGDGVISYDEFTAFAEANRGLI 77 (84)
Q Consensus 54 d~~~~g~l~~~ef~~~~~~~~~~~ 77 (84)
...+.+.|+.++|.-++.+.+..+
T Consensus 48 ~~rg~~~i~~eDl~F~lR~D~~Kl 71 (93)
T PF02269_consen 48 QRRGSKKIKVEDLLFLLRKDPKKL 71 (93)
T ss_dssp ------------------------
T ss_pred hccccCcCcHHHHHHHHhcCHHHH
Confidence 345678899999988887655443
No 158
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=40.04 E-value=1.1e+02 Score=22.08 Aligned_cols=47 Identities=9% Similarity=0.244 Sum_probs=36.7
Q ss_pred HHHHHHhcccCCCcccHHHHHHHHHhcCC-CCHHHHHHHHHhhcCCCC
Q 046921 12 ERVFKRFDLNGDGKISASELADCLNALSS-VSDEEVKKMMAEIDTDGD 58 (84)
Q Consensus 12 ~~~F~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d~~~~ 58 (84)
..+...||+.++|.|..-+|+..+-.+.+ +..+..+.+|......+.
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s 520 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS 520 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh
Confidence 44567899999999999999988877664 667778888888765544
No 159
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=39.48 E-value=76 Score=18.26 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=21.0
Q ss_pred ccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhc
Q 046921 20 LNGDGKISASELADCLNALS-SVSDEEVKKMMAEID 54 (84)
Q Consensus 20 ~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d 54 (84)
.+.+|+++.+++.+.+..-+ ..+.+++..++..-+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 46789999999988887754 356777887776644
No 160
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=39.07 E-value=55 Score=16.49 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=32.5
Q ss_pred CCcccHHHHHHHHHhcCCCCHHHHH---HHHHhhcCCCCCceeHHHHHHHHHHcHHH
Q 046921 23 DGKISASELADCLNALSSVSDEEVK---KMMAEIDTDGDGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 23 ~g~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~d~~~~g~l~~~ef~~~~~~~~~~ 76 (84)
...++..++..++...+.....-+. ..++.........++.++.+.++...+..
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~L 89 (105)
T cd02977 33 KEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKL 89 (105)
T ss_pred cCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCe
Confidence 3456788888888776632222222 23333333323568889999988876654
No 161
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=38.12 E-value=35 Score=17.52 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=11.1
Q ss_pred CCCceeHHHHHHHHHHcHHH
Q 046921 57 GDGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 57 ~~g~l~~~ef~~~~~~~~~~ 76 (84)
.+|.++-++|...|...+..
T Consensus 3 ~d~~~~~~~F~~~W~sl~~~ 22 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLPDS 22 (114)
T ss_dssp TT----HHHHHHHHHHS-GG
T ss_pred CCCccCHHHHHHHHHhCCcc
Confidence 46888888898888876543
No 162
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=37.18 E-value=39 Score=16.50 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=14.6
Q ss_pred cCCCCCceeHHHHHHHHH
Q 046921 54 DTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 54 d~~~~g~l~~~ef~~~~~ 71 (84)
..+..|.|++..|+..+.
T Consensus 12 ~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWS 29 (76)
T ss_pred EEcCCCcCcHHHHHHHHH
Confidence 457789999999988765
No 163
>CHL00195 ycf46 Ycf46; Provisional
Probab=37.18 E-value=1.3e+02 Score=20.26 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHH
Q 046921 9 ADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDE 65 (84)
Q Consensus 9 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~e 65 (84)
+++..+...+.....-.++...+..+.+.+.+++..+++.++...- ..+|.++.+.
T Consensus 145 ~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~-~~~~~~~~~~ 200 (489)
T CHL00195 145 SEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKII-ATYKTIDENS 200 (489)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCCChhh
Confidence 3444444444333344577788888888877788888888776532 2344555554
No 164
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=37.08 E-value=16 Score=19.31 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=27.2
Q ss_pred cCCCcccHHHHHHHHHhcC---CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 21 NGDGKISASELADCLNALS---SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 21 ~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
..||.++.+|...+...+. ..+......+...++.......++.++...+.
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHC
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3578888888777665541 33444555555555443333556666655443
No 165
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=35.22 E-value=65 Score=16.22 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhcc-cCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHHHHH
Q 046921 7 DKADRERVFKRFDL-NGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRGLIK 78 (84)
Q Consensus 7 ~~~~~~~~F~~~d~-~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~~~ 78 (84)
-.+++...=...|. -++|.|+.+++..+... +.+++.+++++..... .|....+-|..++......+-
T Consensus 10 LV~rI~~v~plLD~Ll~n~~it~E~y~~V~a~--~T~qdkmRkLld~v~a--kG~~~k~~F~~iL~e~~~~y~ 78 (85)
T cd08324 10 LVTHIRNTQCLVDNLLKNDYFSTEDAEIVCAC--PTQPDKVRKILDLVQS--KGEEVSEYFLYLLQQLADAYV 78 (85)
T ss_pred HHHHHHhhHHHHHHHhccCCccHHHHHHHHhC--CCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHhhh
Confidence 34445544445554 56899999998776643 3778889999888554 355567778777765554433
No 166
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=34.75 E-value=1.1e+02 Score=18.70 Aligned_cols=60 Identities=8% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHHhc--ccCCCcccHHHHHHHHHhcC---CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 12 ERVFKRFD--LNGDGKISASELADCLNALS---SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 12 ~~~F~~~d--~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
..+|..+. ...||.++..|.. ..+.+. +++...-+.+...+........++.+|...+..
T Consensus 56 ~a~~aLl~~vAkADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 56 NTTFAVMGHLAKAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred HHHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 34444443 2568999999987 434332 355555333344444444445778888777654
No 167
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=34.53 E-value=1.2e+02 Score=19.26 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=41.4
Q ss_pred HHHHHHHHhcccCCCcccHHHHHHHHHhcC----CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHHHHHHHHh
Q 046921 10 DRERVFKRFDLNGDGKISASELADCLNALS----SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRGLIKNVAK 82 (84)
Q Consensus 10 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~----~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~~~~~~~ 82 (84)
-+++..+.....++|.|+..--..++..+. ++.....+-+-...+.-+.|-|..+.....+......++++..
T Consensus 223 LLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~E 299 (332)
T COG2255 223 LLRRVRDFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIE 299 (332)
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHh
Confidence 345556666667888888777677777665 2333332222222233345667777776666655555555544
No 168
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=34.32 E-value=93 Score=20.19 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=38.2
Q ss_pred HHHHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 046921 12 ERVFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFA 70 (84)
Q Consensus 12 ~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~ 70 (84)
..+...+|+.+.|.++.-..+..+..+. +.-.+.++-+|.... +.+|.+.+..|..++
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 3445577888889988888887776655 345566666766654 456666655555444
No 169
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=33.93 E-value=58 Score=16.47 Aligned_cols=23 Identities=9% Similarity=0.485 Sum_probs=14.7
Q ss_pred CceeHHHHHHHHHHcHHHHHHHH
Q 046921 59 GVISYDEFTAFAEANRGLIKNVA 81 (84)
Q Consensus 59 g~l~~~ef~~~~~~~~~~~~~~~ 81 (84)
+.|++++|..++......++.+.
T Consensus 11 d~v~~~~FA~~IGKt~sAVr~Mi 33 (87)
T PF10743_consen 11 DAVTYEKFAEYIGKTPSAVRKMI 33 (87)
T ss_pred cccCHHHHHHHHCCCHHHHHHHH
Confidence 45777777777766666555544
No 170
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=32.94 E-value=51 Score=14.36 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=27.3
Q ss_pred cHHhHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHH
Q 046921 4 EEQDKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMA 51 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~ 51 (84)
+.++...+...|.. +.+++..+...+...++ ++...|...|.
T Consensus 8 t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~-l~~~~V~~WF~ 49 (57)
T PF00046_consen 8 TKEQLKVLEEYFQE-----NPYPSKEEREELAKELG-LTERQVKNWFQ 49 (57)
T ss_dssp SHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT-SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----hcccccccccccccccc-ccccccccCHH
Confidence 44666777777774 45667777777766665 66666666554
No 171
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=32.79 E-value=79 Score=17.26 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=13.9
Q ss_pred CCceeHHHHHHHHHHcHHHHH
Q 046921 58 DGVISYDEFTAFAEANRGLIK 78 (84)
Q Consensus 58 ~g~l~~~ef~~~~~~~~~~~~ 78 (84)
+|.|+..+|+..+......-+
T Consensus 42 ng~IsVreFVr~La~S~~yr~ 62 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRK 62 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHH
Confidence 677888888887776555433
No 172
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=32.67 E-value=1e+02 Score=17.72 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=25.8
Q ss_pred ccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhc
Q 046921 20 LNGDGKISASELADCLNALS-SVSDEEVKKMMAEID 54 (84)
Q Consensus 20 ~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d 54 (84)
.+.+|+++.+++...++..+ ..+.+.+..+...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 36789999999998887544 367777777765544
No 173
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=31.83 E-value=64 Score=15.10 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=27.0
Q ss_pred CCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCC
Q 046921 22 GDGKISASELADCLNALS-SVSDEEVKKMMAEIDTDG 57 (84)
Q Consensus 22 ~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~ 57 (84)
.++.++..++...+...+ ..+...++.-++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 456788888888887766 466788888888887654
No 174
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=31.55 E-value=93 Score=16.90 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=32.6
Q ss_pred CCCcccHHHHHHHHHhcCC----------CCHHHHHHHHHhhcCCCCC-ceeHHHHHHH
Q 046921 22 GDGKISASELADCLNALSS----------VSDEEVKKMMAEIDTDGDG-VISYDEFTAF 69 (84)
Q Consensus 22 ~~g~l~~~e~~~~l~~~~~----------~~~~~~~~~~~~~d~~~~g-~l~~~ef~~~ 69 (84)
++..|+.+||.+++..-.+ .....++++...+...+.+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 4567888888888876432 3567788888777775554 3777765543
No 175
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=31.45 E-value=97 Score=17.07 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=35.8
Q ss_pred CCcccHHHHHHHHHhcCC----CCHHH-HHHHHHhhcCCCCCceeHHHHHHHHHHcHHHHHHHHh
Q 046921 23 DGKISASELADCLNALSS----VSDEE-VKKMMAEIDTDGDGVISYDEFTAFAEANRGLIKNVAK 82 (84)
Q Consensus 23 ~g~l~~~e~~~~l~~~~~----~~~~~-~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~~~~~~~~ 82 (84)
.+..+..+|..-+....+ ..... +..+|..... .|+..++-.+....+..+++++.
T Consensus 73 ~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r----~Is~gei~~v~s~Lp~~~~elw~ 133 (135)
T COG5502 73 KLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKR----HISPGEIDKVRSRLPKEIRELWE 133 (135)
T ss_pred CCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHCcHHHHHhcc
Confidence 456777777665544332 22233 3366666654 58888888888888877777664
No 176
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=31.41 E-value=1e+02 Score=17.46 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=21.1
Q ss_pred CCcccHHHHHHHHHhcC------CCCHHHHHHHHHhhc
Q 046921 23 DGKISASELADCLNALS------SVSDEEVKKMMAEID 54 (84)
Q Consensus 23 ~g~l~~~e~~~~l~~~~------~~~~~~~~~~~~~~d 54 (84)
-+.++.++++.+|..+. ...++.+..+..++.
T Consensus 71 ~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 71 ARTITFEEFKKALEELATKRFKGKSKEEALDAICQLLA 108 (180)
T ss_pred cccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHh
Confidence 35788889988887765 244555666655544
No 177
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=31.04 E-value=69 Score=15.22 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=21.6
Q ss_pred CcccHHHHHHHHHhcC-CCCHHHHHHHHHhh
Q 046921 24 GKISASELADCLNALS-SVSDEEVKKMMAEI 53 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~ 53 (84)
-.|+.+-++..+.+.| .+++..++++.+.+
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3477777888888877 47777777776654
No 178
>COG5562 Phage envelope protein [General function prediction only]
Probab=29.74 E-value=52 Score=18.12 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHhhcCCCCCceeHHHHHHHHH
Q 046921 50 MAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 50 ~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
-....++..|..+|++|...+.
T Consensus 78 ~~al~~~qsGqttF~ef~~~la 99 (137)
T COG5562 78 KTALRRHQSGQTTFEEFCSALA 99 (137)
T ss_pred HHHHHHHhcCCccHHHHHHHHH
Confidence 3444567789999999988764
No 179
>PF14178 YppF: YppF-like protein
Probab=29.73 E-value=63 Score=15.14 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=9.2
Q ss_pred CcccHHHHHHHHHhc
Q 046921 24 GKISASELADCLNAL 38 (84)
Q Consensus 24 g~l~~~e~~~~l~~~ 38 (84)
|.|+..+++.+++.+
T Consensus 35 gei~i~eYR~lvreL 49 (60)
T PF14178_consen 35 GEISINEYRNLVREL 49 (60)
T ss_pred CcccHHHHHHHHHHH
Confidence 566666666666554
No 180
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=28.88 E-value=61 Score=14.46 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=11.8
Q ss_pred HHHHhcccCCCcccHHHHHHHHH
Q 046921 14 VFKRFDLNGDGKISASELADCLN 36 (84)
Q Consensus 14 ~F~~~d~~~~g~l~~~e~~~~l~ 36 (84)
+|+.....+++.++..|+..-+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 34444444456777776665544
No 181
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=28.13 E-value=75 Score=14.77 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHhcccCCCcccHHHHHHHHHhcC--CCCHHHHHHHHHhhcC
Q 046921 15 FKRFDLNGDGKISASELADCLNALS--SVSDEEVKKMMAEIDT 55 (84)
Q Consensus 15 F~~~d~~~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~d~ 55 (84)
|..+.....|.++..+...+-.-+. +.+.+.+..++..+-.
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~ 44 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALE 44 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444455567777777766665555 3556666667766653
No 182
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=27.69 E-value=93 Score=15.68 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=33.6
Q ss_pred CcccHHHHHHHHHhcC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 24 GKISASELADCLNALS-SVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
..++..||.++.+.++ ..+...++.++..+....-.-.+-++=..++.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 3578899999999988 57888888888887655444445554444443
No 183
>PRK00523 hypothetical protein; Provisional
Probab=27.69 E-value=86 Score=15.28 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHhcC-CCCHHHHHHHHHhh
Q 046921 25 KISASELADCLNALS-SVSDEEVKKMMAEI 53 (84)
Q Consensus 25 ~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~ 53 (84)
.|+.+-++..+.+.| .+++..++++.+.+
T Consensus 39 pine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 39 PITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 467777777777777 47777777777655
No 184
>PRK05849 hypothetical protein; Provisional
Probab=27.62 E-value=1.3e+02 Score=21.67 Aligned_cols=43 Identities=37% Similarity=0.407 Sum_probs=21.5
Q ss_pred CCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 23 DGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 23 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
.|.++.++...++.++...+......++.. |.+++++|+.-..
T Consensus 472 ~g~~s~~~~~~f~~s~~Tv~~~~~~D~~~l------g~l~~~~FL~~YG 514 (783)
T PRK05849 472 IGALSQEELDAFLNSLNTVSKELSKDLNSL------GELSKDEFLKRYG 514 (783)
T ss_pred cCCCCHHHHHHHHHHhhHhHHHHHHHHHHH------hccCHHHHHHHhC
Confidence 455666665555555442223223333333 4567777765443
No 185
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=27.47 E-value=88 Score=18.31 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=19.2
Q ss_pred HHHhcccCCCcccHHHHHHHHHhc
Q 046921 15 FKRFDLNGDGKISASELADCLNAL 38 (84)
Q Consensus 15 F~~~d~~~~g~l~~~e~~~~l~~~ 38 (84)
..-+|.+++|.++.+++..+....
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 336789999999999998887653
No 186
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=27.44 E-value=65 Score=13.83 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q 046921 29 SELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTA 68 (84)
Q Consensus 29 ~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~ 68 (84)
+|....+..+| ....++...+..... ....+.++.+.
T Consensus 4 ~d~~~AL~~LG-y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG-YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 45566666666 777788887777764 33355665543
No 187
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=26.78 E-value=1.6e+02 Score=18.00 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeH
Q 046921 29 SELADCLNALSSVSDEEVKKMMAEIDTDGDGVISY 63 (84)
Q Consensus 29 ~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~ 63 (84)
..+..+++.+.+.....++.+|+.+..++.-.|..
T Consensus 102 sN~ER~lwlla~~d~qi~~~l~nefe~~~~~qv~k 136 (266)
T KOG2616|consen 102 SNFERVLWLLAGSDSQITRALMNEFERTGSVQVPK 136 (266)
T ss_pred ccHHHHHHHHhCChHHHHHHHHHHHhhCCceecCH
Confidence 34555565555555566777888887766555543
No 188
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=26.33 E-value=81 Score=14.54 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEI 53 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~ 53 (84)
++-+.+.|.. .+.+...++-.++...+ ++.+.++..|..-
T Consensus 10 ~~pL~~Yy~~-----h~~L~E~DL~~L~~kS~-ms~qqVr~WFa~~ 49 (56)
T PF11569_consen 10 IQPLEDYYLK-----HKQLQEEDLDELCDKSR-MSYQQVRDWFAER 49 (56)
T ss_dssp -HHHHHHHHH-----T----TTHHHHHHHHTT---HHHHHHHHHHH
T ss_pred hHHHHHHHHH-----cCCccHhhHHHHHHHHC-CCHHHHHHHHHHh
Confidence 3344555544 34566667777777644 7777777777553
No 189
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=26.19 E-value=1.1e+02 Score=15.91 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=8.4
Q ss_pred CCcccHHHHHHHHHhc
Q 046921 23 DGKISASELADCLNAL 38 (84)
Q Consensus 23 ~g~l~~~e~~~~l~~~ 38 (84)
.|.|+.+|+..++..+
T Consensus 27 ~~~is~~ef~~iI~~I 42 (118)
T PF10256_consen 27 SGYISPEEFEEIINTI 42 (118)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3455555555555443
No 190
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.47 E-value=2.2e+02 Score=19.19 Aligned_cols=48 Identities=13% Similarity=0.251 Sum_probs=35.0
Q ss_pred CCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 046921 23 DGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTAFAEA 72 (84)
Q Consensus 23 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~ 72 (84)
..+|+.+++..++.....+....++.++...-. .+.++.+++..++..
T Consensus 10 ~~~i~~~~i~~~l~~~~~~~~~~v~~il~Kal~--~~~Ls~eEal~LL~~ 57 (469)
T PRK09613 10 ADFIDDEEIEELLEKAKNPDKDEIREILEKAKE--KKGLSPEEAAVLLNV 57 (469)
T ss_pred hhhcCHHHHHHHHHhccCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHcC
Confidence 467888889988887555666667777766543 345999999888754
No 191
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.47 E-value=95 Score=15.06 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHhcC-CCCHHHHHHHHHhh
Q 046921 25 KISASELADCLNALS-SVSDEEVKKMMAEI 53 (84)
Q Consensus 25 ~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~ 53 (84)
.|+.+-++..+.+.| .+++..++++++..
T Consensus 38 pine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 38 PINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467777777777777 47777777776654
No 192
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=24.65 E-value=44 Score=22.61 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q 046921 13 RVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEIDTDGDGVISYDEFTA 68 (84)
Q Consensus 13 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~g~l~~~ef~~ 68 (84)
.-|..+|+|..|.+...++..++..-+....++...+....--+-+|.+.|.++..
T Consensus 28 ~~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~tr~h~~envs~~le~ik~kg 83 (612)
T COG5069 28 KEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGKG 83 (612)
T ss_pred HHHhhhccccccHHHHHHHHHHhhhccccccCCCHHHHHHHhhccccceeeeccCC
Confidence 45667788888888888888877664322222222333333335566777776654
No 193
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=24.62 E-value=1.2e+02 Score=17.70 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALS 39 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~ 39 (84)
-++.++++|..||+..=-..+.+++..++...+
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~g 85 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAG 85 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcc
Confidence 457788999999998878888888888887655
No 194
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=24.29 E-value=3.1e+02 Score=20.62 Aligned_cols=33 Identities=9% Similarity=0.299 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHc
Q 046921 41 VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEAN 73 (84)
Q Consensus 41 ~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~ 73 (84)
.+..++..+|..+..+....++.+++..++...
T Consensus 218 cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~ 250 (1189)
T KOG1265|consen 218 CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKK 250 (1189)
T ss_pred CCchhHHHHHHHhccCCCccccHHHHHHHHhhh
Confidence 355678888888888877889999888887643
No 195
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=23.99 E-value=1.3e+02 Score=16.15 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHhcCCCCHHHHH---HHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 24 GKISASELADCLNALSSVSDEEVK---KMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
..++.+++..++...+.....-+. ..++....+. ..++.++.+.++..++.
T Consensus 35 ~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~ 88 (132)
T PRK13344 35 EPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPR 88 (132)
T ss_pred CCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCcc
Confidence 457888888888776522222111 1233322222 34566666666665544
No 196
>PRK10026 arsenate reductase; Provisional
Probab=23.78 E-value=1.4e+02 Score=16.43 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHhcCCCCHHHHHH---HHHhhcCCCCCceeHHHHHHHHHHcHHH
Q 046921 24 GKISASELADCLNALSSVSDEEVKK---MMAEIDTDGDGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~~~~~~~~~~---~~~~~d~~~~g~l~~~ef~~~~~~~~~~ 76 (84)
..++.+++..++...+..+..-++. .++....+.+ .++.++.+.++..++..
T Consensus 37 ~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~L 91 (141)
T PRK10026 37 TPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPIL 91 (141)
T ss_pred CCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCccc
Confidence 4578899999998766322333222 3444433332 47888888888766543
No 197
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=23.21 E-value=42 Score=17.17 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=29.1
Q ss_pred CcccHHHHHHHHHhcCCCCHHHHH---HHHHhhcCCCCCceeHHHHHHHHHHcHHH
Q 046921 24 GKISASELADCLNALSSVSDEEVK---KMMAEIDTDGDGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~d~~~~g~l~~~ef~~~~~~~~~~ 76 (84)
..++..++..++..++.....-+. ..++.........++.++.+.++..++..
T Consensus 31 ~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~L 86 (110)
T PF03960_consen 31 EPLSREELRELLSKLGNGPDDLINTRSKTYKELGKLKKDDLSDEELIELLLENPKL 86 (110)
T ss_dssp S---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGG
T ss_pred CCCCHHHHHHHHHHhcccHHHHhcCccchHhhhhhhhhhhhhhHHHHHHHHhChhh
Confidence 457888898888887621111111 23333331223468889999988877654
No 198
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=23.01 E-value=79 Score=13.31 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=11.7
Q ss_pred cCCCcccHHHHHHHHHh
Q 046921 21 NGDGKISASELADCLNA 37 (84)
Q Consensus 21 ~~~g~l~~~e~~~~l~~ 37 (84)
...|-++.++++.+++.
T Consensus 9 ~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 9 QQQGPFSLEELRQLISS 25 (45)
T ss_pred eEECCcCHHHHHHHHHc
Confidence 34577777777777765
No 199
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=22.28 E-value=1.3e+02 Score=15.41 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=27.9
Q ss_pred CcccHHHHHHHHHhcCCCCHHHHH---HHHHhhcCCCCCceeHHHHHHHHHHcHHH
Q 046921 24 GKISASELADCLNALSSVSDEEVK---KMMAEIDTDGDGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~d~~~~g~l~~~ef~~~~~~~~~~ 76 (84)
..++.+++..++...+ ...-++ ..++....+....++.++.+.++..++..
T Consensus 34 ~p~s~~eL~~~l~~~g--~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~L 87 (105)
T cd03035 34 DGLDAATLERWLAKVG--WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSL 87 (105)
T ss_pred CCCCHHHHHHHHHHhC--hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCe
Confidence 4578888888887654 111111 12333222222346778888887766543
No 200
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=22.25 E-value=2.7e+02 Score=19.18 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=36.8
Q ss_pred HHHHhcccCCCcccHHHHHHHHHhcC-CCCHHHHHHHHHhh---cC-----CCCCceeHHHHHHHH
Q 046921 14 VFKRFDLNGDGKISASELADCLNALS-SVSDEEVKKMMAEI---DT-----DGDGVISYDEFTAFA 70 (84)
Q Consensus 14 ~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~---d~-----~~~g~l~~~ef~~~~ 70 (84)
+|..+-..+.+.++..-|-.++++.| ..+...+++++..+ +. ...+.++.+-|...+
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 35555555678899999999999988 34445555555443 32 223457878787654
No 201
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=22.03 E-value=81 Score=16.33 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEID 54 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d 54 (84)
+..+...+|..+.+.-...+...++-.+=..++.++..+....+..+.
T Consensus 13 ~~~~~~evFeslP~emq~Alet~~ld~vnkVl~~M~veeAE~~v~~~~ 60 (99)
T PF08564_consen 13 EERKAREVFESLPPEMQKALETGDLDEVNKVLGKMPVEEAEYHVERCI 60 (99)
T ss_dssp ------HHHHHS-TT------------HHHHHT--SSSHHHHHHHHHH
T ss_pred hhhhHHHHHHHCCHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334566788888776656666666655555556566556666665554
No 202
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=21.85 E-value=1.7e+02 Score=16.60 Aligned_cols=57 Identities=14% Similarity=0.308 Sum_probs=34.0
Q ss_pred CCcccHHHHHHHHHh-cC------------CCCHHHHHHH----HHhhcCCCCCceeHHHHHHHHHHcHHHHHHHHh
Q 046921 23 DGKISASELADCLNA-LS------------SVSDEEVKKM----MAEIDTDGDGVISYDEFTAFAEANRGLIKNVAK 82 (84)
Q Consensus 23 ~g~l~~~e~~~~l~~-~~------------~~~~~~~~~~----~~~~d~~~~g~l~~~ef~~~~~~~~~~~~~~~~ 82 (84)
+|.|+...|-.++.. +| .++.+++..+ ++.+..+ ..+-++|-.++...+..+.++..
T Consensus 97 n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae---~~dtE~Ye~vwkKmPaY~~nil~ 170 (175)
T PF04876_consen 97 NGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAE---SSDTEHYEKVWKKMPAYFSNILQ 170 (175)
T ss_pred ccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHhhHHHHHHHH
Confidence 567777777766642 11 2445555443 3444333 35677788888888887776653
No 203
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.79 E-value=2.7e+02 Score=18.90 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCCC--CHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 046921 7 DKADRERVFKRFDLNGDGKISASELADCLNALSSV--SDEEVKKMMAEIDTDGDGVISYDEFTAFAE 71 (84)
Q Consensus 7 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~--~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~ 71 (84)
..+.++.+-+.+|-|.+|.|+.+|--.+++.--.+ +...-.+-| - ..+..|+.++.-..|.
T Consensus 66 g~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f---H-~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 66 GYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKF---H-GDDKHITVEDLWEAWK 128 (575)
T ss_pred hHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhc---c-CCccceeHHHHHHHHH
Confidence 45678889999999999999999888888653211 111111112 1 1355677777655554
No 204
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=21.77 E-value=1.1e+02 Score=14.56 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=13.3
Q ss_pred cHHhHHHHHHHHHHhcccC
Q 046921 4 EEQDKADRERVFKRFDLNG 22 (84)
Q Consensus 4 ~~~~~~~~~~~F~~~d~~~ 22 (84)
+.++..++..+|..+|+.+
T Consensus 9 trqevvemlqlfdlmdtkg 27 (77)
T PF13050_consen 9 TRQEVVEMLQLFDLMDTKG 27 (77)
T ss_pred cHHHHHHHHHHHHHhcccc
Confidence 4566677778888887644
No 205
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.69 E-value=3e+02 Score=19.39 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHhcC--C-------CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHcHH
Q 046921 8 KADRERVFKRFDLNGDGKISASELADCLNALS--S-------VSDEEVKKMMAEIDTDGDGVISYDEFTAFAEANRG 75 (84)
Q Consensus 8 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~--~-------~~~~~~~~~~~~~d~~~~g~l~~~ef~~~~~~~~~ 75 (84)
..+++-+|..+|. .+|.++.+++..++.... + ........++...+.+..|.+..+++..++.....
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~ 92 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPT 92 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhchH
Confidence 4567778888887 889999999998876543 1 12233445677777888888888877777665443
No 206
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=21.52 E-value=1.1e+02 Score=14.53 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHhcccCCCcccHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 046921 12 ERVFKRFDLNGDGKISASELADCLNALSSVSDEEVKKMMAEID 54 (84)
Q Consensus 12 ~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d 54 (84)
.-+|-.+-....+.|+..++..++...+ .++.-++..+..+-
T Consensus 7 ~tl~Gdy~~~~g~~i~~~~Li~ll~~~G-v~e~avR~alsRl~ 48 (70)
T PF07848_consen 7 VTLLGDYLRPRGGWIWVASLIRLLAAFG-VSESAVRTALSRLV 48 (70)
T ss_dssp HHHHHHHCCTTTS-EEHHHHHHHHCCTT---HHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCceeHHHHHHHHHHcC-CChHHHHHHHHHHH
Confidence 4455555667788999999999888766 66666666655543
No 207
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=21.11 E-value=1.4e+02 Score=15.39 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=30.7
Q ss_pred CcccHHHHHHHHHhcCCCCHHHHH---HHHHhhcCCCCCceeHHHHHHHHHHcHHH
Q 046921 24 GKISASELADCLNALSSVSDEEVK---KMMAEIDTDGDGVISYDEFTAFAEANRGL 76 (84)
Q Consensus 24 g~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~d~~~~g~l~~~ef~~~~~~~~~~ 76 (84)
..++..++..++...+.....-+. ..++....+. ..++-++.+.++..++..
T Consensus 35 ~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~L 89 (115)
T cd03032 35 QPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSL 89 (115)
T ss_pred CcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhh
Confidence 456788889888877522222221 2334333332 357888888888776654
No 208
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=20.87 E-value=1.3e+02 Score=14.91 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=8.1
Q ss_pred CCCcccHHHHHHHHH
Q 046921 22 GDGKISASELADCLN 36 (84)
Q Consensus 22 ~~g~l~~~e~~~~l~ 36 (84)
.||.++..|...+-+
T Consensus 12 aDG~v~~~E~~~i~~ 26 (106)
T cd07316 12 ADGRVSEAEIQAARA 26 (106)
T ss_pred ccCCcCHHHHHHHHH
Confidence 356666666554433
No 209
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=20.78 E-value=1.8e+02 Score=16.55 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHhhcC-CCCCceeHHHHHHHHHHcHHHHHHHH
Q 046921 26 ISASELADCLNALSSVSDEEVKKMMAEIDT-DGDGVISYDEFTAFAEANRGLIKNVA 81 (84)
Q Consensus 26 l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~-~~~g~l~~~ef~~~~~~~~~~~~~~~ 81 (84)
.+..|+..++.... .+.++++.+...... -..|..+..+..+-+...+..++.+.
T Consensus 87 cs~~DLsdii~i~f-~~deel~~~~e~i~~~v~~Gn~Sl~~lsr~l~~sp~firglA 142 (160)
T PF09824_consen 87 CSMEDLSDIIYIAF-MSDEELRDYVEKIEKEVEAGNTSLSDLSRKLGISPVFIRGLA 142 (160)
T ss_pred eeHHHHHHHHheee-cCHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHH
Confidence 35555555554433 455555555444432 12366777777666665555554443
No 210
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=20.51 E-value=1.2e+02 Score=14.36 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=6.1
Q ss_pred ccHHHHHHHHHhc
Q 046921 26 ISASELADCLNAL 38 (84)
Q Consensus 26 l~~~e~~~~l~~~ 38 (84)
+-..+++.++..+
T Consensus 40 l~a~~L~~A~~~L 52 (73)
T PF12631_consen 40 LVAEDLREALESL 52 (73)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555444
No 211
>PRK01844 hypothetical protein; Provisional
Probab=20.10 E-value=1.3e+02 Score=14.66 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHhcC-CCCHHHHHHHHHhh
Q 046921 25 KISASELADCLNALS-SVSDEEVKKMMAEI 53 (84)
Q Consensus 25 ~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~ 53 (84)
.|+.+-++..+.+.| .+++..++++.+.+
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 467777777777777 47777777776655
Done!