Query 046926
Match_columns 226
No_of_seqs 284 out of 1834
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:54:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 1.2E-29 2.6E-34 209.2 12.4 105 6-110 112-235 (236)
2 PF00139 Lectin_legB: Legume l 99.9 1.2E-27 2.6E-32 197.4 10.4 101 7-108 114-236 (236)
3 cd01951 lectin_L-type legume l 99.9 1.2E-22 2.6E-27 166.3 11.7 101 7-109 100-223 (223)
4 KOG1187 Serine/threonine prote 98.6 2.4E-08 5.2E-13 87.4 4.1 39 186-224 61-99 (361)
5 cd07308 lectin_leg-like legume 98.4 4.5E-06 9.7E-11 68.1 11.3 94 8-108 98-216 (218)
6 cd06902 lectin_ERGIC-53_ERGL E 97.9 0.0001 2.2E-09 60.4 10.2 64 42-109 159-223 (225)
7 PLN00113 leucine-rich repeat r 97.6 0.0001 2.2E-09 72.3 6.3 33 189-224 682-714 (968)
8 KOG0196 Tyrosine kinase, EPH ( 97.3 8.5E-05 1.8E-09 69.6 1.2 38 188-225 608-654 (996)
9 KOG3653 Transforming growth fa 97.1 0.00066 1.4E-08 60.4 4.8 19 206-224 216-234 (534)
10 PF08693 SKG6: Transmembrane a 95.8 0.019 4.2E-07 33.5 3.7 27 134-163 13-39 (40)
11 KOG1025 Epidermal growth facto 95.6 0.003 6.6E-08 60.0 -0.0 21 202-222 698-718 (1177)
12 PF03388 Lectin_leg-like: Legu 95.6 0.058 1.3E-06 44.3 7.5 58 42-105 163-223 (229)
13 cd06903 lectin_EMP46_EMP47 EMP 95.6 0.099 2.1E-06 42.6 8.6 55 42-107 155-211 (215)
14 cd06901 lectin_VIP36_VIPL VIP3 95.6 0.14 3.1E-06 42.6 9.6 62 42-109 161-222 (248)
15 KOG3838 Mannose lectin ERGIC-5 94.7 0.36 7.9E-06 42.3 9.8 61 42-106 191-251 (497)
16 PF04478 Mid2: Mid2 like cell 94.7 0.065 1.4E-06 40.8 4.7 19 131-149 47-65 (154)
17 PLN03224 probable serine/threo 94.7 0.015 3.3E-07 53.3 1.6 23 199-221 144-166 (507)
18 PF14575 EphA2_TM: Ephrin type 94.5 0.011 2.4E-07 39.8 0.1 18 188-205 55-72 (75)
19 PLN03225 Serine/threonine-prot 94.0 0.054 1.2E-06 50.5 3.6 27 198-224 130-156 (566)
20 PTZ00382 Variant-specific surf 93.8 0.086 1.9E-06 37.2 3.6 23 128-150 61-83 (96)
21 KOG2052 Activin A type IB rece 93.8 0.089 1.9E-06 46.9 4.3 20 205-224 216-235 (513)
22 KOG3839 Lectin VIP36, involved 93.5 0.29 6.3E-06 41.9 6.7 59 42-107 213-272 (351)
23 PF06697 DUF1191: Protein of u 91.0 1 2.3E-05 37.9 7.0 8 72-79 158-165 (278)
24 KOG0193 Serine/threonine prote 90.7 0.12 2.6E-06 47.8 1.3 18 206-223 398-415 (678)
25 PF15102 TMEM154: TMEM154 prot 87.6 0.63 1.4E-05 35.3 3.1 7 190-196 125-131 (146)
26 PTZ00284 protein kinase; Provi 87.0 0.18 4E-06 45.5 -0.1 31 193-223 122-152 (467)
27 KOG1035 eIF-2alpha kinase GCN2 86.9 0.39 8.6E-06 47.9 2.1 23 198-220 477-499 (1351)
28 KOG1024 Receptor-like protein 86.6 1 2.2E-05 40.0 4.2 25 200-224 284-308 (563)
29 PF15065 NCU-G1: Lysosomal tra 86.5 0.3 6.5E-06 42.6 0.9 30 85-114 281-310 (350)
30 KOG0194 Protein tyrosine kinas 85.9 0.43 9.2E-06 43.4 1.6 18 206-223 163-180 (474)
31 PF01102 Glycophorin_A: Glycop 85.7 0.26 5.7E-06 36.3 0.2 17 131-147 62-78 (122)
32 PF03302 VSP: Giardia variant- 85.7 0.91 2E-05 40.5 3.6 28 127-154 361-388 (397)
33 PTZ00036 glycogen synthase kin 83.0 0.58 1.3E-05 42.0 1.2 26 200-225 66-91 (440)
34 PRK09605 bifunctional UGMP fam 82.4 0.67 1.5E-05 42.8 1.4 27 198-224 331-357 (535)
35 KOG1026 Nerve growth factor re 81.5 2.2 4.7E-05 41.0 4.4 19 206-224 492-510 (774)
36 cd05622 STKc_ROCK1 Catalytic d 81.5 0.63 1.4E-05 40.7 0.9 34 192-225 35-68 (371)
37 PF12877 DUF3827: Domain of un 80.8 1.6 3.4E-05 40.8 3.1 23 128-150 265-287 (684)
38 cd05104 PTKc_Kit Catalytic dom 80.6 0.79 1.7E-05 40.1 1.2 20 202-221 37-56 (375)
39 KOG0192 Tyrosine kinase specif 80.0 0.99 2.1E-05 39.7 1.5 19 206-224 47-65 (362)
40 cd05621 STKc_ROCK2 Catalytic d 79.6 0.78 1.7E-05 40.1 0.8 26 199-224 42-67 (370)
41 KOG0986 G protein-coupled rece 79.3 1.1 2.3E-05 40.6 1.5 26 200-225 185-210 (591)
42 cd05596 STKc_ROCK Catalytic do 78.9 0.59 1.3E-05 40.8 -0.2 26 199-224 42-67 (370)
43 PLN00034 mitogen-activated pro 78.4 1.3 2.8E-05 38.2 1.8 20 205-224 79-98 (353)
44 cd05105 PTKc_PDGFR_alpha Catal 77.6 1.6 3.4E-05 38.8 2.1 20 202-221 39-58 (400)
45 PF02480 Herpes_gE: Alphaherpe 77.6 0.73 1.6E-05 41.6 0.0 14 134-147 353-366 (439)
46 PHA03209 serine/threonine kina 77.2 1.6 3.5E-05 37.8 2.1 27 198-224 64-90 (357)
47 cd05106 PTKc_CSF-1R Catalytic 77.1 1.5 3.3E-05 38.3 1.9 20 202-221 40-59 (374)
48 KOG1095 Protein tyrosine kinas 76.8 1.4 3.1E-05 43.6 1.7 20 205-224 697-716 (1025)
49 cd05107 PTKc_PDGFR_beta Cataly 76.8 1.5 3.2E-05 39.0 1.7 21 202-222 39-59 (401)
50 KOG0663 Protein kinase PITSLRE 76.7 0.77 1.7E-05 39.9 -0.1 21 201-221 77-97 (419)
51 PHA03211 serine/threonine kina 76.5 1.8 3.9E-05 39.3 2.2 24 201-224 170-193 (461)
52 PHA03210 serine/threonine kina 75.6 1.7 3.7E-05 39.8 1.8 23 200-222 148-170 (501)
53 KOG1094 Discoidin domain recep 72.9 17 0.00037 34.3 7.4 25 11-40 263-287 (807)
54 PF15345 TMEM51: Transmembrane 70.2 11 0.00023 30.9 5.0 8 190-197 125-132 (233)
55 KOG4258 Insulin/growth factor 70.0 3.5 7.7E-05 39.9 2.5 22 202-223 996-1017(1025)
56 PF06365 CD34_antigen: CD34/Po 69.9 6.4 0.00014 31.7 3.6 10 133-142 100-109 (202)
57 PF12273 RCR: Chitin synthesis 69.6 2 4.3E-05 32.0 0.6 8 159-166 20-27 (130)
58 PF08374 Protocadherin: Protoc 68.9 4.9 0.00011 32.5 2.7 21 131-151 36-56 (221)
59 KOG1167 Serine/threonine prote 68.3 1.4 3.1E-05 39.0 -0.4 25 199-223 35-59 (418)
60 cd05055 PTKc_PDGFR Catalytic d 68.1 2.4 5.3E-05 35.6 1.0 21 201-221 36-56 (302)
61 PF11770 GAPT: GRB2-binding ad 67.9 1.8 3.8E-05 32.9 0.1 25 137-161 11-35 (158)
62 KOG4257 Focal adhesion tyrosin 66.2 3.1 6.7E-05 39.3 1.3 19 205-223 394-412 (974)
63 PF13908 Shisa: Wnt and FGF in 66.0 3.9 8.6E-05 32.0 1.7 6 88-93 18-23 (179)
64 PF14991 MLANA: Protein melan- 65.0 2 4.4E-05 31.0 -0.1 6 158-163 46-51 (118)
65 KOG0605 NDR and related serine 64.5 4.6 9.9E-05 37.1 2.0 26 200-225 141-166 (550)
66 PF05454 DAG1: Dystroglycan (D 64.2 2.2 4.8E-05 36.3 0.0 9 24-32 34-42 (290)
67 PF12191 stn_TNFRSF12A: Tumour 63.6 3 6.6E-05 30.7 0.6 17 130-146 75-91 (129)
68 KOG0600 Cdc2-related protein k 61.7 2.9 6.3E-05 38.2 0.3 21 202-222 119-139 (560)
69 PHA03212 serine/threonine kina 61.2 5.4 0.00012 35.2 1.9 23 201-223 93-115 (391)
70 PF10577 UPF0560: Uncharacteri 61.0 3.6 7.9E-05 39.5 0.8 9 102-110 235-243 (807)
71 PF01299 Lamp: Lysosome-associ 60.5 4.3 9.3E-05 34.8 1.1 15 134-148 271-285 (306)
72 PF10873 DUF2668: Protein of u 59.0 15 0.00032 27.9 3.5 26 130-155 58-83 (155)
73 KOG1151 Tousled-like protein k 58.6 1.5 3.3E-05 39.6 -2.0 16 205-220 468-483 (775)
74 PF14610 DUF4448: Protein of u 57.6 13 0.00027 29.5 3.3 15 135-149 159-173 (189)
75 KOG0694 Serine/threonine prote 56.0 6.7 0.00015 37.1 1.6 26 200-225 368-393 (694)
76 PHA03265 envelope glycoprotein 55.5 11 0.00025 32.7 2.8 8 27-34 167-174 (402)
77 PF12768 Rax2: Cortical protei 54.0 16 0.00035 31.0 3.5 16 128-143 222-237 (281)
78 KOG1006 Mitogen-activated prot 53.8 5.4 0.00012 33.8 0.6 31 188-225 59-89 (361)
79 KOG1166 Mitotic checkpoint ser 52.4 6.9 0.00015 38.9 1.1 22 202-223 700-721 (974)
80 KOG4236 Serine/threonine prote 50.8 7.9 0.00017 36.0 1.2 23 202-225 567-589 (888)
81 PF07213 DAP10: DAP10 membrane 50.1 13 0.00028 25.1 1.8 21 129-149 30-50 (79)
82 PHA03207 serine/threonine kina 49.3 10 0.00023 33.2 1.7 21 202-222 94-114 (392)
83 KOG0032 Ca2+/calmodulin-depend 47.6 14 0.0003 32.8 2.2 20 206-225 41-60 (382)
84 KOG0581 Mitogen-activated prot 47.3 19 0.0004 31.7 2.8 28 190-224 76-103 (364)
85 PF01102 Glycophorin_A: Glycop 46.7 5.4 0.00012 29.4 -0.4 12 133-144 68-79 (122)
86 TIGR01982 UbiB 2-polyprenylphe 45.0 14 0.0003 33.4 1.8 22 202-224 120-141 (437)
87 KOG0197 Tyrosine kinases [Sign 44.9 12 0.00026 34.0 1.4 19 206-224 212-230 (468)
88 PF15176 LRR19-TM: Leucine-ric 43.6 18 0.00038 25.7 1.8 21 129-149 14-34 (102)
89 cd06900 lectin_VcfQ VcfQ bacte 43.4 1.3E+02 0.0029 25.0 7.1 27 79-105 225-251 (255)
90 TIGR01478 STEVOR variant surfa 39.2 20 0.00043 30.4 1.7 15 150-164 275-289 (295)
91 PTZ00370 STEVOR; Provisional 37.7 21 0.00046 30.2 1.7 15 150-164 271-285 (296)
92 PTZ00267 NIMA-related protein 36.8 17 0.00037 33.0 1.1 19 204-222 71-89 (478)
93 PF04689 S1FA: DNA binding pro 35.8 65 0.0014 20.8 3.3 22 128-149 8-29 (69)
94 PF14014 DUF4230: Protein of u 35.7 70 0.0015 24.1 4.2 41 28-78 48-88 (157)
95 PTZ00046 rifin; Provisional 35.3 12 0.00026 32.7 -0.1 22 145-166 327-348 (358)
96 TIGR01477 RIFIN variant surfac 34.1 13 0.00028 32.5 -0.1 21 146-166 323-343 (353)
97 PF15102 TMEM154: TMEM154 prot 33.8 66 0.0014 24.5 3.6 9 135-143 58-66 (146)
98 KOG0584 Serine/threonine prote 33.2 20 0.00043 33.7 1.0 19 207-225 47-65 (632)
99 PRK04750 ubiB putative ubiquin 32.7 38 0.00083 31.6 2.7 24 201-225 121-144 (537)
100 KOG0199 ACK and related non-re 32.7 19 0.00041 34.8 0.7 17 207-223 117-133 (1039)
101 KOG0200 Fibroblast/platelet-de 31.8 27 0.00058 33.0 1.6 17 207-223 303-319 (609)
102 TIGR01624 LRP1_Cterm LRP1 C-te 31.6 36 0.00079 20.7 1.6 12 214-225 38-49 (50)
103 PF02480 Herpes_gE: Alphaherpe 30.8 16 0.00036 33.0 0.0 8 134-141 357-364 (439)
104 KOG4279 Serine/threonine prote 30.7 23 0.0005 34.3 0.9 18 203-220 578-595 (1226)
105 PF03229 Alpha_GJ: Alphavirus 29.2 43 0.00094 24.4 1.9 16 134-149 84-99 (126)
106 KOG0607 MAP kinase-interacting 29.1 45 0.00098 29.3 2.3 24 191-219 74-97 (463)
107 PLN03150 hypothetical protein; 28.6 88 0.0019 29.7 4.4 14 132-145 543-556 (623)
108 COG4282 SMI1 Protein involved 28.6 79 0.0017 24.7 3.3 29 24-52 126-157 (191)
109 PHA03291 envelope glycoprotein 27.9 35 0.00077 29.8 1.5 18 42-59 147-164 (401)
110 PF05808 Podoplanin: Podoplani 27.8 20 0.00043 27.7 0.0 24 127-150 123-146 (162)
111 KOG3482 Small nuclear ribonucl 27.5 40 0.00088 22.3 1.4 19 205-223 19-37 (79)
112 PF14914 LRRC37AB_C: LRRC37A/B 27.4 35 0.00076 26.0 1.2 14 133-146 120-133 (154)
113 PF10049 DUF2283: Protein of u 26.6 82 0.0018 19.0 2.6 15 44-58 2-16 (50)
114 PF04971 Lysis_S: Lysis protei 26.6 25 0.00053 23.1 0.2 9 134-142 34-42 (68)
115 PF07472 PA-IIL: Fucose-bindin 25.7 2.6E+02 0.0056 20.1 5.4 54 46-106 49-106 (107)
116 KOG4278 Protein tyrosine kinas 23.0 46 0.00099 31.9 1.4 21 202-222 269-289 (1157)
117 KOG1989 ARK protein kinase fam 22.9 46 0.001 32.2 1.4 20 205-224 42-61 (738)
118 KOG4645 MAPKKK (MAP kinase kin 22.5 44 0.00095 34.5 1.2 28 198-225 1233-1260(1509)
119 PTZ00208 65 kDa invariant surf 21.4 24 0.00053 31.3 -0.7 7 211-217 427-433 (436)
120 COG4540 gpV Phage P2 baseplate 21.1 62 0.0013 25.3 1.6 18 42-59 95-112 (184)
121 PF11225 DUF3024: Protein of u 20.4 86 0.0019 19.6 1.9 21 42-62 6-26 (57)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=99.96 E-value=1.2e-29 Score=209.15 Aligned_cols=105 Identities=45% Similarity=0.595 Sum_probs=97.3
Q ss_pred CCCCCeEEEEEecccCC--CCCCCCeeEEEcCCCCccc-----------------eEEEEEcCCCcEEEEEEEeCCCCCc
Q 046926 6 NSSIPFVAVESDVYVNS--WDPTFSHVGVDINSVQSKK-----------------NAWISYNSSTHNLSVAFTGFRNNSV 66 (226)
Q Consensus 6 ~~~~~~~avefdt~~n~--~d~~~~hvgi~~n~~~s~~-----------------~~~i~y~~~~~~l~v~~~~~~~~~~ 66 (226)
.+.+++|||||||++|. +||++||||||+|++.|.. +|||+||+.+++|+|+|.+....+|
T Consensus 112 ~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~ 191 (236)
T cd06899 112 NSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKP 191 (236)
T ss_pred CcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceeeccccccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCC
Confidence 46789999999999997 3999999999999987643 7999999999999999998877789
Q ss_pred ccceeEEEeccccCCCcceEeeEeeecccccceeecccccccCC
Q 046926 67 VMQGLDYQVDLRLHLPEFVTFGFSMATGVDFAIFSIYSWEFNSS 110 (226)
Q Consensus 67 ~~~~l~~~~~Ls~~l~~~v~vGFsastg~~~~~~~il~W~f~s~ 110 (226)
..|+|+..+||+.+||++|||||+|+||...+.|+|++|+|+++
T Consensus 192 ~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i~sWsF~s~ 235 (236)
T cd06899 192 KKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFSSN 235 (236)
T ss_pred cCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999875
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=99.95 E-value=1.2e-27 Score=197.39 Aligned_cols=101 Identities=42% Similarity=0.598 Sum_probs=91.8
Q ss_pred CCCCeEEEEEecccCC--CCCCCCeeEEEcCCCCccc--------------------eEEEEEcCCCcEEEEEEEeCCCC
Q 046926 7 SSIPFVAVESDVYVNS--WDPTFSHVGVDINSVQSKK--------------------NAWISYNSSTHNLSVAFTGFRNN 64 (226)
Q Consensus 7 ~~~~~~avefdt~~n~--~d~~~~hvgi~~n~~~s~~--------------------~~~i~y~~~~~~l~v~~~~~~~~ 64 (226)
+.++.|||||||++|. .||+.+|||||+|++.+.. +|||+||+.+++|+|++.... .
T Consensus 114 ~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~-~ 192 (236)
T PF00139_consen 114 GINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS-S 192 (236)
T ss_dssp GGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT-T
T ss_pred ccCcEEEEEEeeeecccccccCCCEEEEECCCCcccccccccccccccccccCCcEEEEEEEEcCCccEEEEEEeccc-C
Confidence 3678999999999986 7999999999999997632 899999999999999999885 6
Q ss_pred CcccceeEEEeccccCCCcceEeeEeeecccccceeeccccccc
Q 046926 65 SVVMQGLDYQVDLRLHLPEFVTFGFSMATGVDFAIFSIYSWEFN 108 (226)
Q Consensus 65 ~~~~~~l~~~~~Ls~~l~~~v~vGFsastg~~~~~~~il~W~f~ 108 (226)
+|..|+|+..+||+.+++++|||||+|+||...+.|.|++|+|+
T Consensus 193 ~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~I~sW~F~ 236 (236)
T PF00139_consen 193 KPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHDILSWSFS 236 (236)
T ss_dssp TSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred CCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEEEEEEEeC
Confidence 89999999999999999999999999999999999999999985
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=99.89 E-value=1.2e-22 Score=166.30 Aligned_cols=101 Identities=30% Similarity=0.418 Sum_probs=90.7
Q ss_pred CCCCeEEEEEecccCC--CCCCCCeeEEEcCCCCcc-------c--------------eEEEEEcCCCcEEEEEEEeCCC
Q 046926 7 SSIPFVAVESDVYVNS--WDPTFSHVGVDINSVQSK-------K--------------NAWISYNSSTHNLSVAFTGFRN 63 (226)
Q Consensus 7 ~~~~~~avefdt~~n~--~d~~~~hvgi~~n~~~s~-------~--------------~~~i~y~~~~~~l~v~~~~~~~ 63 (226)
..++.+||||||++|. +||+.+|||||+|+..+. . +|||+||+.+++|+|+|.+...
T Consensus 100 ~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~I~Y~~~~~~L~v~l~~~~~ 179 (223)
T cd01951 100 GIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASLPNGTGLGNEHTVRITYDPTTNTLTVYLDNGST 179 (223)
T ss_pred ccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeCCCccCCCCEEEEEEEEeCCCCEEEEEECCCCc
Confidence 4578999999999997 699999999999998632 1 7999999999999999987653
Q ss_pred CCcccceeEEEeccccCCCcceEeeEeeecccccceeecccccccC
Q 046926 64 NSVVMQGLDYQVDLRLHLPEFVTFGFSMATGVDFAIFSIYSWEFNS 109 (226)
Q Consensus 64 ~~~~~~~l~~~~~Ls~~l~~~v~vGFsastg~~~~~~~il~W~f~s 109 (226)
|..|+++.++||+..++++||+||+|+||...+.|.|+.|+|+.
T Consensus 180 --~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 180 --LTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred --cccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 67799999999999999999999999999999999999999963
No 4
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.64 E-value=2.4e-08 Score=87.43 Aligned_cols=39 Identities=46% Similarity=0.881 Sum_probs=36.7
Q ss_pred CCceechHHHHHHHhCCCcCCccccCCCcceEEEEeCCC
Q 046926 186 GPKRFPYKELALATNDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 186 ~~~~f~~~el~~AT~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
..+.|+|+||.+||++|+++|+||+||||.||||.|++.
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~ 99 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDG 99 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCC
Confidence 567899999999999999999999999999999999874
No 5
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=98.40 E-value=4.5e-06 Score=68.08 Aligned_cols=94 Identities=27% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCCeEEEEEecccCCCCCCCCeeEEEcCCCC-c------------------------cceEEEEEcCCCcEEEEEEEeCC
Q 046926 8 SIPFVAVESDVYVNSWDPTFSHVGVDINSVQ-S------------------------KKNAWISYNSSTHNLSVAFTGFR 62 (226)
Q Consensus 8 ~~~~~avefdt~~n~~d~~~~hvgi~~n~~~-s------------------------~~~~~i~y~~~~~~l~v~~~~~~ 62 (226)
..+-+||||||+.|. +-...+|-+-+|--. + ..+++|.|+ .+.|.|.+.+..
T Consensus 98 ~~~Glai~fdt~~n~-~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~~~~~~~~~~~I~y~--~~~l~v~i~~~~ 174 (218)
T cd07308 98 KFKGLAIFFDTYDND-GKGFPSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSNAPTTLRISYL--NNTLKVDITYSE 174 (218)
T ss_pred CCCEEEEEEEcCCCC-CCCCCeEEEEEeCCCceecccCCCccccccceeEecccCCCCeEEEEEEE--CCEEEEEEeCCC
Confidence 356799999999985 222223333222111 0 007999999 578999887542
Q ss_pred CCCcccceeEEEeccccCCCcceEeeEeeecccccceeeccccccc
Q 046926 63 NNSVVMQGLDYQVDLRLHLPEFVTFGFSMATGVDFAIFSIYSWEFN 108 (226)
Q Consensus 63 ~~~~~~~~l~~~~~Ls~~l~~~v~vGFsastg~~~~~~~il~W~f~ 108 (226)
+....+...++.- .+|+..|+||+|.||...+.|.|++|.+.
T Consensus 175 ---~~~~~~c~~~~~~-~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 175 ---GNNWKECFTVEDV-ILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred ---CCCccEEEEcCCc-ccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 1122233333322 56788999999999999999999998763
No 6
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=97.94 E-value=0.0001 Score=60.44 Aligned_cols=64 Identities=25% Similarity=0.110 Sum_probs=42.9
Q ss_pred eEEEEEcCCCcEEEEEEEeCCCCCcccceeEEEecccc-CCCcceEeeEeeecccccceeecccccccC
Q 046926 42 NAWISYNSSTHNLSVAFTGFRNNSVVMQGLDYQVDLRL-HLPEFVTFGFSMATGVDFAIFSIYSWEFNS 109 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~~~~~~~~~~~~l~~~~~Ls~-~l~~~v~vGFsastg~~~~~~~il~W~f~s 109 (226)
++.|.|... .|.|.+.....+....-.+. +++.. .||+..|+||+|.||...+.|.|++|.+.+
T Consensus 159 ~~rI~Y~~~--~l~V~~d~~~~~~~~~~~~C--f~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 159 RAKITYYQN--VLTVSINNGFTPNKDDYELC--TRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred EEEEEEECC--eEEEEEeCCcCCCCCcccEE--EecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 789999884 58888864332121111111 12222 467789999999999999999999988753
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.61 E-value=0.0001 Score=72.27 Aligned_cols=33 Identities=15% Similarity=0.359 Sum_probs=25.7
Q ss_pred eechHHHHHHHhCCCcCCccccCCCcceEEEEeCCC
Q 046926 189 RFPYKELALATNDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 189 ~f~~~el~~AT~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
.++++++.. .+.+.++||+|+||.||||.....
T Consensus 682 ~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~ 714 (968)
T PLN00113 682 SITINDILS---SLKEENVISRGKKGASYKGKSIKN 714 (968)
T ss_pred hhhHHHHHh---hCCcccEEccCCCeeEEEEEECCC
Confidence 456666554 478889999999999999987543
No 8
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=97.30 E-value=8.5e-05 Score=69.60 Aligned_cols=38 Identities=26% Similarity=0.534 Sum_probs=31.9
Q ss_pred ceechHHHHHHHhCCCc---------CCccccCCCcceEEEEeCCCC
Q 046926 188 KRFPYKELALATNDFND---------DQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 188 ~~f~~~el~~AT~~F~~---------~n~lG~GgfG~VYKG~L~~~~ 225 (226)
..++|+|--+|...|.. +.+||.|.||.||+|.|.-.|
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pg 654 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPG 654 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCC
Confidence 45789998888888776 689999999999999997544
No 9
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=97.13 E-value=0.00066 Score=60.43 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=16.9
Q ss_pred CccccCCCcceEEEEeCCC
Q 046926 206 QKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 206 n~lG~GgfG~VYKG~L~~~ 224 (226)
.+||+|+||.||||.|.++
T Consensus 216 eli~~Grfg~V~KaqL~~~ 234 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQLDNR 234 (534)
T ss_pred HHhhcCccceeehhhccCc
Confidence 3899999999999999764
No 10
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.77 E-value=0.019 Score=33.49 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=11.4
Q ss_pred cEEeeehhhHHHHHHHHHHHHhhhheeecc
Q 046926 134 PVVGLSLGGGFLVGGVVLIIRLAGIGRKRK 163 (226)
Q Consensus 134 ~ii~i~v~~~~~~~~~~~~~~~~~~~~r~~ 163 (226)
+.+++++.+++++++++++++ +|+||+
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~---~~~rR~ 39 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLF---FWYRRK 39 (40)
T ss_pred EEEEEEechHHHHHHHHHHhh---eEEecc
Confidence 344444444444433333333 455543
No 11
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=95.63 E-value=0.003 Score=59.98 Aligned_cols=21 Identities=48% Similarity=0.906 Sum_probs=17.9
Q ss_pred CCcCCccccCCCcceEEEEeC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLR 222 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~ 222 (226)
+.++.+||.|+||+||||..-
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~ 718 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWI 718 (1177)
T ss_pred hhhhceeccccceeEEeeeEe
Confidence 566779999999999999763
No 12
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=95.61 E-value=0.058 Score=44.32 Aligned_cols=58 Identities=31% Similarity=0.288 Sum_probs=38.5
Q ss_pred eEEEEEcCCCcEEEEEEEeC--CCCCcccceeEEE-eccccCCCcceEeeEeeecccccceeecccc
Q 046926 42 NAWISYNSSTHNLSVAFTGF--RNNSVVMQGLDYQ-VDLRLHLPEFVTFGFSMATGVDFAIFSIYSW 105 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~~~--~~~~~~~~~l~~~-~~Ls~~l~~~v~vGFsastg~~~~~~~il~W 105 (226)
++.|.|... .|.|.+... .....-..++... + .||+.-|+||+|+||...+.|.|++.
T Consensus 163 ~~ri~Y~~~--~l~v~id~~~~~~~~~~~~Cf~~~~v----~LP~~~yfGvSA~Tg~~~d~hdi~s~ 223 (229)
T PF03388_consen 163 RIRISYSKN--TLTVSIDSNYLKNQDDWELCFTTDGV----DLPEGYYFGVSAATGELSDNHDILSV 223 (229)
T ss_dssp EEEEEEETT--EEEEEEETSCCSECCTTEEEEEESTE----EGGSSBEEEEEEEESSSGGEEEEEEE
T ss_pred EEEEEEECC--eEEEEEecccccCCcCCcEEEEcCCe----ecCCCCEEEEEecCCCCCCcEEEEEE
Confidence 688888875 466666522 1112223444432 3 35777899999999999999999764
No 13
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=95.57 E-value=0.099 Score=42.56 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=38.0
Q ss_pred eEEEEEcCCCcEEEEEEEeCCCCCcccceeEE-EeccccCCC-cceEeeEeeecccccceeecccccc
Q 046926 42 NAWISYNSSTHNLSVAFTGFRNNSVVMQGLDY-QVDLRLHLP-EFVTFGFSMATGVDFAIFSIYSWEF 107 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~~~~~~~~~~~~l~~-~~~Ls~~l~-~~v~vGFsastg~~~~~~~il~W~f 107 (226)
++.|.|......|.|.+.. +.++.. .+. || .-.|+||+|+||...+.|.|++..+
T Consensus 155 ~iri~Y~~~~~~l~v~vd~-------~~Cf~~~~v~----lP~~~y~fGiSAaTg~~~d~hdIl~~~~ 211 (215)
T cd06903 155 TIRLSYDALNSLFKVQVDN-------RLCFQTDKVQ----LPQGGYRFGITAANADNPESFEILKLKV 211 (215)
T ss_pred EEEEEEECCCCEEEEEECC-------CEEEecCCee----cCCCCCEEEEEEcCCCCCCcEEEEEEEE
Confidence 7888888766677777632 123332 233 45 4567999999999989999987543
No 14
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=95.56 E-value=0.14 Score=42.60 Aligned_cols=62 Identities=26% Similarity=0.173 Sum_probs=40.5
Q ss_pred eEEEEEcCCCcEEEEEEEeCCCCCcccceeEEEeccccCCCcceEeeEeeecccccceeecccccccC
Q 046926 42 NAWISYNSSTHNLSVAFTGFRNNSVVMQGLDYQVDLRLHLPEFVTFGFSMATGVDFAIFSIYSWEFNS 109 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~~~~~~~~~~~~l~~~~~Ls~~l~~~v~vGFsastg~~~~~~~il~W~f~s 109 (226)
.++|.|... .|.|.+...+... -..|+... .-.||...|+||+|.||...+.|.|++-.+..
T Consensus 161 ~~rI~Y~~~--~l~v~vd~~~~~~-w~~Cf~~~---~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~ 222 (248)
T cd06901 161 FVAIRYSKG--RLTVMTDIDGKNE-WKECFDVT---GVRLPTGYYFGASAATGDLSDNHDIISMKLYE 222 (248)
T ss_pred EEEEEEECC--eEEEEEecCCCCc-eeeeEEeC---CeecCCCCEEEEEecCCCCCCcEEEEEEEEec
Confidence 688999864 4777775533111 12233221 12467778999999999999999998765544
No 15
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.73 E-value=0.36 Score=42.28 Aligned_cols=61 Identities=28% Similarity=0.215 Sum_probs=45.0
Q ss_pred eEEEEEcCCCcEEEEEEEeCCCCCcccceeEEEeccccCCCcceEeeEeeecccccceeeccccc
Q 046926 42 NAWISYNSSTHNLSVAFTGFRNNSVVMQGLDYQVDLRLHLPEFVTFGFSMATGVDFAIFSIYSWE 106 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~~~~~~~~~~~~l~~~~~Ls~~l~~~v~vGFsastg~~~~~~~il~W~ 106 (226)
.|.|+|-. +.|+|.+.....+. ..+-+..+++ .-+||..-|.|.||+||....-|.+++..
T Consensus 191 RarItY~~--nvLtv~innGmtp~-d~yE~C~rve-~~~lp~nGyFGvSAATGgLADDHDVl~Fl 251 (497)
T KOG3838|consen 191 RARITYYG--NVLTVMINNGMTPS-DDYEFCVRVE-NLLLPPNGYFGVSAATGGLADDHDVLSFL 251 (497)
T ss_pred eEEEEEec--cEEEEEEcCCCCCC-CCcceeEecc-ceeccCCCeeeeeecccccccccceeeeE
Confidence 89999986 57999987655433 3344444443 12568889999999999999999998753
No 16
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=94.72 E-value=0.065 Score=40.81 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=11.7
Q ss_pred CcccEEeeehhhHHHHHHH
Q 046926 131 RKAPVVGLSLGGGFLVGGV 149 (226)
Q Consensus 131 ~~~~ii~i~v~~~~~~~~~ 149 (226)
.+.++||+++|+.+.++++
T Consensus 47 nknIVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLG 65 (154)
T ss_pred CccEEEEEEecccHHHHHH
Confidence 3457888887765544433
No 17
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=94.71 E-value=0.015 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.787 Sum_probs=20.9
Q ss_pred HhCCCcCCccccCCCcceEEEEe
Q 046926 199 TNDFNDDQKLGQGGFGGVYKGFL 221 (226)
Q Consensus 199 T~~F~~~n~lG~GgfG~VYKG~L 221 (226)
+++|...++||+|+||+||||.+
T Consensus 144 ~d~F~i~~~LG~GgFG~VYkG~~ 166 (507)
T PLN03224 144 SDDFQLRDKLGGGNFGITFEGLR 166 (507)
T ss_pred ccCceEeeEeecCCCeEEEEEEe
Confidence 56799999999999999999976
No 18
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=94.47 E-value=0.011 Score=39.85 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=14.6
Q ss_pred ceechHHHHHHHhCCCcC
Q 046926 188 KRFPYKELALATNDFNDD 205 (226)
Q Consensus 188 ~~f~~~el~~AT~~F~~~ 205 (226)
..+||+|..+|-..|..+
T Consensus 55 DP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 55 DPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp -GGGSSSHHHHHHHCSSB
T ss_pred CcccccCHHHHHHHHHhh
Confidence 457899999999999863
No 19
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=93.99 E-value=0.054 Score=50.45 Aligned_cols=27 Identities=44% Similarity=0.704 Sum_probs=22.9
Q ss_pred HHhCCCcCCccccCCCcceEEEEeCCC
Q 046926 198 ATNDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 198 AT~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
..++|...++||+|+||.||+|++.+.
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~ 156 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNK 156 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCC
Confidence 456788888999999999999998654
No 20
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=93.84 E-value=0.086 Score=37.25 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=14.1
Q ss_pred CCCCcccEEeeehhhHHHHHHHH
Q 046926 128 RKNRKAPVVGLSLGGGFLVGGVV 150 (226)
Q Consensus 128 ~~~~~~~ii~i~v~~~~~~~~~~ 150 (226)
...+...++++++++++++.+++
T Consensus 61 ~~ls~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred CCcccccEEEEEeehhhHHHHHH
Confidence 34556678888877665554443
No 21
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.79 E-value=0.089 Score=46.94 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=17.2
Q ss_pred CCccccCCCcceEEEEeCCC
Q 046926 205 DQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 205 ~n~lG~GgfG~VYKG~L~~~ 224 (226)
-..||+|.||.|.||...++
T Consensus 216 ~e~IGkGRyGEVwrG~wrGe 235 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRWRGE 235 (513)
T ss_pred EEEecCccccceeeccccCC
Confidence 45899999999999988765
No 22
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=0.29 Score=41.93 Aligned_cols=59 Identities=24% Similarity=0.108 Sum_probs=40.7
Q ss_pred eEEEEEcCCCcEEEEEEEeCCCCCcccceeEEEecccc-CCCcceEeeEeeecccccceeecccccc
Q 046926 42 NAWISYNSSTHNLSVAFTGFRNNSVVMQGLDYQVDLRL-HLPEFVTFGFSMATGVDFAIFSIYSWEF 107 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~~~~~~~~~~~~l~~~~~Ls~-~l~~~v~vGFsastg~~~~~~~il~W~f 107 (226)
.+-|.|+. +.|++.....+ |.. +..-.+|.. .+|.--|+|++|+||+..+.|.+++-.+
T Consensus 213 ~~~iry~~--~~l~~~~dl~~---~~~--~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 213 LVVIRYEK--KTLSISIDLEG---PNE--WIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred eeEEEecC--CceEEEEecCC---Cce--eeeeeeecceecccceEEeeeeccCccchhhHHHHhhh
Confidence 68888988 56777665543 222 222334444 5677789999999999999999876544
No 23
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=90.96 E-value=1 Score=37.86 Aligned_cols=8 Identities=25% Similarity=-0.006 Sum_probs=3.4
Q ss_pred EEEecccc
Q 046926 72 DYQVDLRL 79 (226)
Q Consensus 72 ~~~~~Ls~ 79 (226)
...+|+.+
T Consensus 158 Cv~F~~~G 165 (278)
T PF06697_consen 158 CVTFDLDG 165 (278)
T ss_pred EEEEcCCC
Confidence 33444443
No 24
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=90.68 E-value=0.12 Score=47.82 Aligned_cols=18 Identities=39% Similarity=0.924 Sum_probs=15.6
Q ss_pred CccccCCCcceEEEEeCC
Q 046926 206 QKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 206 n~lG~GgfG~VYKG~L~~ 223 (226)
..||+|.||+||||..-+
T Consensus 398 ~rIGsGsFGtV~Rg~whG 415 (678)
T KOG0193|consen 398 ERIGSGSFGTVYRGRWHG 415 (678)
T ss_pred ceeccccccceeeccccc
Confidence 489999999999997643
No 25
>PF15102 TMEM154: TMEM154 protein family
Probab=87.65 E-value=0.63 Score=35.27 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=3.3
Q ss_pred echHHHH
Q 046926 190 FPYKELA 196 (226)
Q Consensus 190 f~~~el~ 196 (226)
+.++||-
T Consensus 125 iEmeeld 131 (146)
T PF15102_consen 125 IEMEELD 131 (146)
T ss_pred hhHHHHH
Confidence 3445553
No 26
>PTZ00284 protein kinase; Provisional
Probab=86.96 E-value=0.18 Score=45.48 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCcCCccccCCCcceEEEEeCC
Q 046926 193 KELALATNDFNDDQKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 193 ~el~~AT~~F~~~n~lG~GgfG~VYKG~L~~ 223 (226)
+++...++.|.-.++||+|+||+||++....
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~ 152 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRK 152 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcC
Confidence 3444455667777899999999999998654
No 27
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=86.87 E-value=0.39 Score=47.88 Aligned_cols=23 Identities=48% Similarity=0.718 Sum_probs=18.4
Q ss_pred HHhCCCcCCccccCCCcceEEEE
Q 046926 198 ATNDFNDDQKLGQGGFGGVYKGF 220 (226)
Q Consensus 198 AT~~F~~~n~lG~GgfG~VYKG~ 220 (226)
-.+.|-+=.+||+||||.|||..
T Consensus 477 Y~~DFEEL~lLGkGGFG~VvkVR 499 (1351)
T KOG1035|consen 477 YLNDFEELELLGKGGFGSVVKVR 499 (1351)
T ss_pred HhhhhHHHHHhcCCCCceEEEEe
Confidence 34456666799999999999985
No 28
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=86.60 E-value=1 Score=40.03 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.6
Q ss_pred hCCCcCCccccCCCcceEEEEeCCC
Q 046926 200 NDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 200 ~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
.-|.-..++-+|.||.||+|.+.++
T Consensus 284 ~Rv~l~~llqEGtFGri~~gI~~eE 308 (563)
T KOG1024|consen 284 CRVRLSCLLQEGTFGRIYRGIWREE 308 (563)
T ss_pred hheechhhhhcCchhheeeeeeccc
Confidence 3466677999999999999988765
No 29
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=86.48 E-value=0.3 Score=42.63 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=23.2
Q ss_pred eEeeEeeecccccceeecccccccCCCccc
Q 046926 85 VTFGFSMATGVDFAIFSIYSWEFNSSLEMD 114 (226)
Q Consensus 85 v~vGFsastg~~~~~~~il~W~f~s~~~~~ 114 (226)
+.+=|..+.+.++.-+..++|++..-...|
T Consensus 281 ~nvSFG~~gDgfY~~t~ylsWt~~~G~G~P 310 (350)
T PF15065_consen 281 LNVSFGTSGDGFYWATNYLSWTFLIGYGSP 310 (350)
T ss_pred EEEEeccCCCCcccccceEEEEEecccCCC
Confidence 666688888888888999999997654433
No 30
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=85.88 E-value=0.43 Score=43.41 Aligned_cols=18 Identities=56% Similarity=1.032 Sum_probs=16.2
Q ss_pred CccccCCCcceEEEEeCC
Q 046926 206 QKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 206 n~lG~GgfG~VYKG~L~~ 223 (226)
.+||+|.||.||+|.|.-
T Consensus 163 kkLGeGaFGeV~~G~l~~ 180 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKL 180 (474)
T ss_pred ceeecccccEEEEEEEEe
Confidence 599999999999999864
No 31
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.68 E-value=0.26 Score=36.32 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=7.8
Q ss_pred CcccEEeeehhhHHHHH
Q 046926 131 RKAPVVGLSLGGGFLVG 147 (226)
Q Consensus 131 ~~~~ii~i~v~~~~~~~ 147 (226)
....+++|++|+++.++
T Consensus 62 s~~~i~~Ii~gv~aGvI 78 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVI 78 (122)
T ss_dssp S-TCHHHHHHHHHHHHH
T ss_pred cccceeehhHHHHHHHH
Confidence 33445555555544333
No 32
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=85.65 E-value=0.91 Score=40.45 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=18.8
Q ss_pred CCCCCcccEEeeehhhHHHHHHHHHHHH
Q 046926 127 RRKNRKAPVVGLSLGGGFLVGGVVLIIR 154 (226)
Q Consensus 127 ~~~~~~~~ii~i~v~~~~~~~~~~~~~~ 154 (226)
++.++...|++|+|++++++-.|+.|+.
T Consensus 361 ~s~LstgaIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 361 KSGLSTGAIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred cccccccceeeeeehhHHHHHHHHHHHh
Confidence 4456778888988877766655555444
No 33
>PTZ00036 glycogen synthase kinase; Provisional
Probab=83.01 E-value=0.58 Score=42.02 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=20.5
Q ss_pred hCCCcCCccccCCCcceEEEEeCCCC
Q 046926 200 NDFNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 200 ~~F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
+.|.-.++||+|+||.||+|...+.+
T Consensus 66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~ 91 (440)
T PTZ00036 66 KSYKLGNIIGNGSFGVVYEAICIDTS 91 (440)
T ss_pred CeEEEeEEEEeCCCEEEEEEEECCCC
Confidence 34666779999999999999875543
No 34
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=82.39 E-value=0.67 Score=42.80 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=20.8
Q ss_pred HHhCCCcCCccccCCCcceEEEEeCCC
Q 046926 198 ATNDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 198 AT~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
.+..+...++||+|+||+||+|.+.+.
T Consensus 331 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~ 357 (535)
T PRK09605 331 VKRRKIPDHLIGKGAEADIKKGEYLGR 357 (535)
T ss_pred cccccCccceeccCCcEEEEEEeecCc
Confidence 344456678999999999999887543
No 35
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.54 E-value=2.2 Score=40.97 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=16.4
Q ss_pred CccccCCCcceEEEEeCCC
Q 046926 206 QKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 206 n~lG~GgfG~VYKG~L~~~ 224 (226)
..||+|.||.||+|.+.+.
T Consensus 492 ~eLGegaFGkVf~a~~~~l 510 (774)
T KOG1026|consen 492 EELGEGAFGKVFLAEAYGL 510 (774)
T ss_pred hhhcCchhhhhhhhhccCC
Confidence 4899999999999988653
No 36
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=81.52 E-value=0.63 Score=40.69 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=25.7
Q ss_pred hHHHHHHHhCCCcCCccccCCCcceEEEEeCCCC
Q 046926 192 YKELALATNDFNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 192 ~~el~~AT~~F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
+.++....++|.-...||+|+||.||++.....+
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~ 68 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTR 68 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCC
Confidence 3444555567888889999999999999876543
No 37
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=80.80 E-value=1.6 Score=40.82 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=11.7
Q ss_pred CCCCcccEEeeehhhHHHHHHHH
Q 046926 128 RKNRKAPVVGLSLGGGFLVGGVV 150 (226)
Q Consensus 128 ~~~~~~~ii~i~v~~~~~~~~~~ 150 (226)
.....|+++|+++.+++++++++
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iii 287 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIII 287 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHH
Confidence 34456666666554444433333
No 38
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=80.65 E-value=0.79 Score=40.09 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=16.0
Q ss_pred CCcCCccccCCCcceEEEEe
Q 046926 202 FNDDQKLGQGGFGGVYKGFL 221 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L 221 (226)
|.-...||+|+||.||++..
T Consensus 37 ~~~~~~LG~G~fG~V~~~~~ 56 (375)
T cd05104 37 LSFGKTLGAGAFGKVVEATA 56 (375)
T ss_pred eehhheecCCccceEEEEEE
Confidence 33356999999999999863
No 39
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=79.96 E-value=0.99 Score=39.73 Aligned_cols=19 Identities=58% Similarity=0.941 Sum_probs=16.2
Q ss_pred CccccCCCcceEEEEeCCC
Q 046926 206 QKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 206 n~lG~GgfG~VYKG~L~~~ 224 (226)
+.||+|+||+||||...+.
T Consensus 47 ~~iG~G~~g~V~~~~~~g~ 65 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWRGT 65 (362)
T ss_pred hhcccCCceeEEEEEeCCc
Confidence 3599999999999988653
No 40
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=79.59 E-value=0.78 Score=40.14 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=20.8
Q ss_pred HhCCCcCCccccCCCcceEEEEeCCC
Q 046926 199 TNDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 199 T~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
.++|.-.++||+|+||.||++.....
T Consensus 42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~ 67 (370)
T cd05621 42 AEDYDVVKVIGRGAFGEVQLVRHKSS 67 (370)
T ss_pred HHHCeEEEEEEecCCeEEEEEEECCC
Confidence 45566677999999999999987654
No 41
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=79.35 E-value=1.1 Score=40.62 Aligned_cols=26 Identities=42% Similarity=0.649 Sum_probs=21.9
Q ss_pred hCCCcCCccccCCCcceEEEEeCCCC
Q 046926 200 NDFNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 200 ~~F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
+.|..-++||+||||.||-....+.|
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTG 210 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATG 210 (591)
T ss_pred cceeeeEEEecccccceeEEEEecch
Confidence 34888899999999999988777665
No 42
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=78.94 E-value=0.59 Score=40.81 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=20.8
Q ss_pred HhCCCcCCccccCCCcceEEEEeCCC
Q 046926 199 TNDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 199 T~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
.++|.-.++||+|+||.||++.....
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~ 67 (370)
T cd05596 42 AEDFDVIKVIGRGAFGEVQLVRHKSS 67 (370)
T ss_pred HHHcEEEEEEeeCCCEEEEEEEECCC
Confidence 34577777999999999999987654
No 43
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=78.44 E-value=1.3 Score=38.21 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=16.6
Q ss_pred CCccccCCCcceEEEEeCCC
Q 046926 205 DQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 205 ~n~lG~GgfG~VYKG~L~~~ 224 (226)
.++||+|+||+||++.....
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~ 98 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPT 98 (353)
T ss_pred hhhccCCCCeEEEEEEECCC
Confidence 35899999999999987543
No 44
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=77.61 E-value=1.6 Score=38.79 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=16.2
Q ss_pred CCcCCccccCCCcceEEEEe
Q 046926 202 FNDDQKLGQGGFGGVYKGFL 221 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L 221 (226)
|.-.++||+|+||.||+|+.
T Consensus 39 ~~~~~~LG~G~fG~Vy~~~~ 58 (400)
T cd05105 39 LVLGRILGSGAFGKVVEGTA 58 (400)
T ss_pred eehhheecCCCCceEEEEEE
Confidence 33345999999999999975
No 45
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=77.61 E-value=0.73 Score=41.61 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=0.0
Q ss_pred cEEeeehhhHHHHH
Q 046926 134 PVVGLSLGGGFLVG 147 (226)
Q Consensus 134 ~ii~i~v~~~~~~~ 147 (226)
++++++++++++++
T Consensus 353 ~~l~vVlgvavliv 366 (439)
T PF02480_consen 353 ALLGVVLGVAVLIV 366 (439)
T ss_dssp --------------
T ss_pred chHHHHHHHHHHHH
Confidence 33334434443333
No 46
>PHA03209 serine/threonine kinase US3; Provisional
Probab=77.22 E-value=1.6 Score=37.77 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHhCCCcCCccccCCCcceEEEEeCCC
Q 046926 198 ATNDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 198 AT~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
...+|.-...||+|+||.||+|.....
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~ 90 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQ 90 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCC
Confidence 345688888999999999999987654
No 47
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=77.11 E-value=1.5 Score=38.33 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.7
Q ss_pred CCcCCccccCCCcceEEEEe
Q 046926 202 FNDDQKLGQGGFGGVYKGFL 221 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L 221 (226)
|.-.++||+|+||.||++..
T Consensus 40 ~~~~~~LG~G~fg~V~~~~~ 59 (374)
T cd05106 40 LQFGKTLGAGAFGKVVEATA 59 (374)
T ss_pred ceehheecCCCcccEEEEEE
Confidence 55566999999999999874
No 48
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=76.77 E-value=1.4 Score=43.60 Aligned_cols=20 Identities=40% Similarity=0.785 Sum_probs=17.2
Q ss_pred CCccccCCCcceEEEEeCCC
Q 046926 205 DQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 205 ~n~lG~GgfG~VYKG~L~~~ 224 (226)
.+.||+|.||.||+|.+.+.
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~ 716 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDV 716 (1025)
T ss_pred eeeeccccccceEEEEEecC
Confidence 45899999999999998653
No 49
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=76.77 E-value=1.5 Score=39.00 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=17.1
Q ss_pred CCcCCccccCCCcceEEEEeC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLR 222 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~ 222 (226)
+.-..+||+|+||.||+|...
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~ 59 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAH 59 (401)
T ss_pred eehhhhccCCCceeEEEEEEc
Confidence 344559999999999999864
No 50
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=76.66 E-value=0.77 Score=39.89 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=17.5
Q ss_pred CCCcCCccccCCCcceEEEEe
Q 046926 201 DFNDDQKLGQGGFGGVYKGFL 221 (226)
Q Consensus 201 ~F~~~n~lG~GgfG~VYKG~L 221 (226)
+|..-|+|++|.||.||||.=
T Consensus 77 efe~lnrI~EGtyGiVYRakd 97 (419)
T KOG0663|consen 77 EFEKLNRIEEGTYGVVYRAKD 97 (419)
T ss_pred HHHHHhhcccCcceeEEEecc
Confidence 466668999999999999963
No 51
>PHA03211 serine/threonine kinase US3; Provisional
Probab=76.54 E-value=1.8 Score=39.30 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.3
Q ss_pred CCCcCCccccCCCcceEEEEeCCC
Q 046926 201 DFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 201 ~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
+|.-..+||+|+||.||++.....
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~~~ 193 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHPDY 193 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEECCC
Confidence 355567899999999999987654
No 52
>PHA03210 serine/threonine kinase US3; Provisional
Probab=75.61 E-value=1.7 Score=39.79 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.8
Q ss_pred hCCCcCCccccCCCcceEEEEeC
Q 046926 200 NDFNDDQKLGQGGFGGVYKGFLR 222 (226)
Q Consensus 200 ~~F~~~n~lG~GgfG~VYKG~L~ 222 (226)
+.|.-..+||+|+||+||++.+.
T Consensus 148 ~~Y~ii~~LG~G~fG~Vyl~~~~ 170 (501)
T PHA03210 148 AHFRVIDDLPAGAFGKIFICALR 170 (501)
T ss_pred hccEEEeEecCCCCcceEEEEEe
Confidence 45666779999999999998653
No 53
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=72.87 E-value=17 Score=34.29 Aligned_cols=25 Identities=28% Similarity=0.209 Sum_probs=18.2
Q ss_pred eEEEEEecccCCCCCCCCeeEEEcCCCCcc
Q 046926 11 FVAVESDVYVNSWDPTFSHVGVDINSVQSK 40 (226)
Q Consensus 11 ~~avefdt~~n~~d~~~~hvgi~~n~~~s~ 40 (226)
-++-|||+.+|. .-|-|..|.+.+.
T Consensus 263 ei~FEF~~~rnf-----s~~~vhtnNmf~k 287 (807)
T KOG1094|consen 263 EIEFEFDELRNF-----SAMQVHTNNMFTK 287 (807)
T ss_pred EEEEEhhhhccc-----ceeEEeccccccc
Confidence 467789998884 4477788887754
No 54
>PF15345 TMEM51: Transmembrane protein 51
Probab=70.18 E-value=11 Score=30.91 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=4.9
Q ss_pred echHHHHH
Q 046926 190 FPYKELAL 197 (226)
Q Consensus 190 f~~~el~~ 197 (226)
-+|+|.+.
T Consensus 125 PSYEEvv~ 132 (233)
T PF15345_consen 125 PSYEEVVN 132 (233)
T ss_pred CChHHHHh
Confidence 36777654
No 55
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=70.00 E-value=3.5 Score=39.89 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=17.2
Q ss_pred CCcCCccccCCCcceEEEEeCC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~~ 223 (226)
....+.||+|+||+||-|.-.+
T Consensus 996 it~~relg~gsfg~Vy~g~~nn 1017 (1025)
T KOG4258|consen 996 ITLGRELGQGSFGMVYEGNANN 1017 (1025)
T ss_pred HhhhhhhccCccceEEEecCCc
Confidence 4445689999999999886543
No 56
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=69.94 E-value=6.4 Score=31.69 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=5.5
Q ss_pred ccEEeeehhh
Q 046926 133 APVVGLSLGG 142 (226)
Q Consensus 133 ~~ii~i~v~~ 142 (226)
.++|++++.+
T Consensus 100 ~~lI~lv~~g 109 (202)
T PF06365_consen 100 PTLIALVTSG 109 (202)
T ss_pred eEEEehHHhh
Confidence 3566665554
No 57
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=69.60 E-value=2 Score=31.96 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=3.8
Q ss_pred eeeccCCc
Q 046926 159 GRKRKEGD 166 (226)
Q Consensus 159 ~~r~~~~~ 166 (226)
+++++|++
T Consensus 20 ~~~~rRR~ 27 (130)
T PF12273_consen 20 YCHNRRRR 27 (130)
T ss_pred HHHHHHHh
Confidence 44555544
No 58
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=68.93 E-value=4.9 Score=32.52 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=12.0
Q ss_pred CcccEEeeehhhHHHHHHHHH
Q 046926 131 RKAPVVGLSLGGGFLVGGVVL 151 (226)
Q Consensus 131 ~~~~ii~i~v~~~~~~~~~~~ 151 (226)
...+++++++|++.+++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFI 56 (221)
T ss_pred ceeeeeeeecchhhhHHHHHH
Confidence 445667777666655544433
No 59
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=68.32 E-value=1.4 Score=39.01 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=21.0
Q ss_pred HhCCCcCCccccCCCcceEEEEeCC
Q 046926 199 TNDFNDDQKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 199 T~~F~~~n~lG~GgfG~VYKG~L~~ 223 (226)
.+.+...++||+|.|++||++++..
T Consensus 35 ~~~~~~v~kigeGsFssv~~a~~~~ 59 (418)
T KOG1167|consen 35 SNAYKVVNKIGEGSFSSVYKATDIE 59 (418)
T ss_pred hhhhhhhccccccchhhhhhhhHhh
Confidence 3457888999999999999998754
No 60
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=68.14 E-value=2.4 Score=35.57 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.1
Q ss_pred CCCcCCccccCCCcceEEEEe
Q 046926 201 DFNDDQKLGQGGFGGVYKGFL 221 (226)
Q Consensus 201 ~F~~~n~lG~GgfG~VYKG~L 221 (226)
+|.-.++||+|+||.||++..
T Consensus 36 ~~~~~~~ig~G~~g~V~~~~~ 56 (302)
T cd05055 36 NLSFGKTLGAGAFGKVVEATA 56 (302)
T ss_pred HeEEcceeeccCCeeEEEEEE
Confidence 477778999999999999864
No 61
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=67.93 E-value=1.8 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=12.2
Q ss_pred eeehhhHHHHHHHHHHHHhhhheee
Q 046926 137 GLSLGGGFLVGGVVLIIRLAGIGRK 161 (226)
Q Consensus 137 ~i~v~~~~~~~~~~~~~~~~~~~~r 161 (226)
++++|+.++++++++.+-|+++|++
T Consensus 11 ~i~igi~Ll~lLl~cgiGcvwhwkh 35 (158)
T PF11770_consen 11 AISIGISLLLLLLLCGIGCVWHWKH 35 (158)
T ss_pred HHHHHHHHHHHHHHHhcceEEEeec
Confidence 3445555555555554444335544
No 62
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=66.24 E-value=3.1 Score=39.33 Aligned_cols=19 Identities=42% Similarity=0.945 Sum_probs=16.6
Q ss_pred CCccccCCCcceEEEEeCC
Q 046926 205 DQKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 205 ~n~lG~GgfG~VYKG~L~~ 223 (226)
..+||+|-||.||+|+..+
T Consensus 394 ~r~iG~GqFGdVy~gvYt~ 412 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVYTD 412 (974)
T ss_pred HHhhcCCcccceeeeEecc
Confidence 4599999999999998754
No 63
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=66.01 E-value=3.9 Score=32.04 Aligned_cols=6 Identities=33% Similarity=0.766 Sum_probs=3.0
Q ss_pred eEeeec
Q 046926 88 GFSMAT 93 (226)
Q Consensus 88 GFsast 93 (226)
||.-.+
T Consensus 18 ~F~C~~ 23 (179)
T PF13908_consen 18 GFNCPE 23 (179)
T ss_pred CCcCCC
Confidence 555553
No 64
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=65.03 E-value=2 Score=31.01 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=0.0
Q ss_pred heeecc
Q 046926 158 IGRKRK 163 (226)
Q Consensus 158 ~~~r~~ 163 (226)
++|||.
T Consensus 46 YckRRS 51 (118)
T PF14991_consen 46 YCKRRS 51 (118)
T ss_dssp ------
T ss_pred eeeecc
Confidence 445544
No 65
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=64.53 E-value=4.6 Score=37.09 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=20.6
Q ss_pred hCCCcCCccccCCCcceEEEEeCCCC
Q 046926 200 NDFNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 200 ~~F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
+.|.-=..||+|+||.||-+.-.+.|
T Consensus 141 ~DFe~Lk~IgkGAfGeVrLarKk~Tg 166 (550)
T KOG0605|consen 141 DDFELLKVIGKGAFGEVRLARKKDTG 166 (550)
T ss_pred ccchhheeeccccceeEEEEEEccCC
Confidence 45666668999999999988776655
No 66
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=64.22 E-value=2.2 Score=36.28 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCCCeeEE
Q 046926 24 DPTFSHVGV 32 (226)
Q Consensus 24 d~~~~hvgi 32 (226)
|++.+||-|
T Consensus 34 D~nts~ItV 42 (290)
T PF05454_consen 34 DRNTSSITV 42 (290)
T ss_dssp ---------
T ss_pred CCCCCeEEE
Confidence 555555554
No 67
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=63.64 E-value=3 Score=30.73 Aligned_cols=17 Identities=18% Similarity=-0.361 Sum_probs=1.5
Q ss_pred CCcccEEeeehhhHHHH
Q 046926 130 NRKAPVVGLSLGGGFLV 146 (226)
Q Consensus 130 ~~~~~ii~i~v~~~~~~ 146 (226)
.+..+.|+..+.+++++
T Consensus 75 ~~l~~pi~~sal~v~lV 91 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLV 91 (129)
T ss_dssp SSSS-------------
T ss_pred cceehhhhhhHHHHHHH
Confidence 33334443343333333
No 68
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=61.74 E-value=2.9 Score=38.18 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=16.2
Q ss_pred CCcCCccccCCCcceEEEEeC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLR 222 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~ 222 (226)
|..-.+||+|.||.|||+.=.
T Consensus 119 feki~kIGeGTyg~VYkAr~~ 139 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDL 139 (560)
T ss_pred HHHHHHhcCcchhheeEeeec
Confidence 333448999999999998643
No 69
>PHA03212 serine/threonine kinase US3; Provisional
Probab=61.19 E-value=5.4 Score=35.21 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=18.6
Q ss_pred CCCcCCccccCCCcceEEEEeCC
Q 046926 201 DFNDDQKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 201 ~F~~~n~lG~GgfG~VYKG~L~~ 223 (226)
.|.-..+||+|+||.||++.-..
T Consensus 93 ~y~~~~~lg~G~~g~V~~~~d~~ 115 (391)
T PHA03212 93 GFSILETFTPGAEGFAFACIDNK 115 (391)
T ss_pred CcEEEEEEcCCCCeEEEEEEECC
Confidence 46666789999999999997643
No 70
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=61.04 E-value=3.6 Score=39.50 Aligned_cols=9 Identities=11% Similarity=0.556 Sum_probs=6.4
Q ss_pred cccccccCC
Q 046926 102 IYSWEFNSS 110 (226)
Q Consensus 102 il~W~f~s~ 110 (226)
-|-|+|...
T Consensus 235 qLvWty~Ap 243 (807)
T PF10577_consen 235 QLVWTYIAP 243 (807)
T ss_pred EEEEEEECc
Confidence 467988765
No 71
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=60.55 E-value=4.3 Score=34.77 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=7.2
Q ss_pred cEEeeehhhHHHHHH
Q 046926 134 PVVGLSLGGGFLVGG 148 (226)
Q Consensus 134 ~ii~i~v~~~~~~~~ 148 (226)
.++-|++|++++.++
T Consensus 271 ~~vPIaVG~~La~lv 285 (306)
T PF01299_consen 271 DLVPIAVGAALAGLV 285 (306)
T ss_pred chHHHHHHHHHHHHH
Confidence 445555555544333
No 72
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=59.02 E-value=15 Score=27.85 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=15.3
Q ss_pred CCcccEEeeehhhHHHHHHHHHHHHh
Q 046926 130 NRKAPVVGLSLGGGFLVGGVVLIIRL 155 (226)
Q Consensus 130 ~~~~~ii~i~v~~~~~~~~~~~~~~~ 155 (226)
.....+.||+.++++++.+++++++|
T Consensus 58 lsgtAIaGIVfgiVfimgvva~i~ic 83 (155)
T PF10873_consen 58 LSGTAIAGIVFGIVFIMGVVAGIAIC 83 (155)
T ss_pred cccceeeeeehhhHHHHHHHHHHHHH
Confidence 34556777877766665555444443
No 73
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=58.61 E-value=1.5 Score=39.63 Aligned_cols=16 Identities=56% Similarity=1.018 Sum_probs=14.0
Q ss_pred CCccccCCCcceEEEE
Q 046926 205 DQKLGQGGFGGVYKGF 220 (226)
Q Consensus 205 ~n~lG~GgfG~VYKG~ 220 (226)
-++||+|||..|||+.
T Consensus 468 LhLLGrGGFSEVyKAF 483 (775)
T KOG1151|consen 468 LHLLGRGGFSEVYKAF 483 (775)
T ss_pred HHHhccccHHHHHHhc
Confidence 3589999999999985
No 74
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=57.60 E-value=13 Score=29.48 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=6.4
Q ss_pred EEeeehhhHHHHHHH
Q 046926 135 VVGLSLGGGFLVGGV 149 (226)
Q Consensus 135 ii~i~v~~~~~~~~~ 149 (226)
.++|++.++++++++
T Consensus 159 ~laI~lPvvv~~~~~ 173 (189)
T PF14610_consen 159 ALAIALPVVVVVLAL 173 (189)
T ss_pred eEEEEccHHHHHHHH
Confidence 444444444443333
No 75
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.99 E-value=6.7 Score=37.10 Aligned_cols=26 Identities=42% Similarity=0.590 Sum_probs=20.7
Q ss_pred hCCCcCCccccCCCcceEEEEeCCCC
Q 046926 200 NDFNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 200 ~~F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
++|.=-.+||+|.||+||.+.+...+
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~ 393 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTN 393 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCC
Confidence 34655669999999999999987654
No 76
>PHA03265 envelope glycoprotein D; Provisional
Probab=55.53 E-value=11 Score=32.73 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=4.3
Q ss_pred CCeeEEEc
Q 046926 27 FSHVGVDI 34 (226)
Q Consensus 27 ~~hvgi~~ 34 (226)
++.+|+.+
T Consensus 167 dDELGLvm 174 (402)
T PHA03265 167 DDELGLVL 174 (402)
T ss_pred ccccceEE
Confidence 45566554
No 77
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.01 E-value=16 Score=31.02 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=8.2
Q ss_pred CCCCcccEEeeehhhH
Q 046926 128 RKNRKAPVVGLSLGGG 143 (226)
Q Consensus 128 ~~~~~~~ii~i~v~~~ 143 (226)
++..++.++.|.++++
T Consensus 222 ~~l~~G~VVlIslAiA 237 (281)
T PF12768_consen 222 KKLSRGFVVLISLAIA 237 (281)
T ss_pred ccccceEEEEEehHHH
Confidence 3444555655555444
No 78
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=53.77 E-value=5.4 Score=33.84 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=20.9
Q ss_pred ceechHHHHHHHhCCCcCCccccCCCcceEEEEeCCCC
Q 046926 188 KRFPYKELALATNDFNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 188 ~~f~~~el~~AT~~F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
..|+-++|+.- ..||.|.||+|+|-.....|
T Consensus 59 ~~F~~~~Lqdl-------g~iG~G~fG~V~KM~hk~sg 89 (361)
T KOG1006|consen 59 HTFTSDNLQDL-------GEIGNGAFGTVNKMLHKPSG 89 (361)
T ss_pred cccccchHHHH-------HHhcCCcchhhhhhhcCccC
Confidence 44555555432 37999999999997655443
No 79
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=52.42 E-value=6.9 Score=38.88 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=18.2
Q ss_pred CCcCCccccCCCcceEEEEeCC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~~ 223 (226)
|.=+..||+|+||+||+|+=.+
T Consensus 700 ~~I~~e~G~g~y~~vy~a~~~~ 721 (974)
T KOG1166|consen 700 FCISKEIGEGSYGSVYVATHSN 721 (974)
T ss_pred EEEEeeeccccceEEEEeecCC
Confidence 4457789999999999998655
No 80
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=50.85 E-value=7.9 Score=36.00 Aligned_cols=23 Identities=52% Similarity=0.878 Sum_probs=17.8
Q ss_pred CCcCCccccCCCcceEEEEeCCCC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
|.+ ++||.|-||+||-|.-...|
T Consensus 567 f~d-evLGSGQFG~VYgg~hRktG 589 (888)
T KOG4236|consen 567 FAD-EVLGSGQFGTVYGGKHRKTG 589 (888)
T ss_pred hhH-hhccCCcceeeecceecccC
Confidence 544 59999999999998765443
No 81
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=50.10 E-value=13 Score=25.12 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=11.3
Q ss_pred CCCcccEEeeehhhHHHHHHH
Q 046926 129 KNRKAPVVGLSLGGGFLVGGV 149 (226)
Q Consensus 129 ~~~~~~ii~i~v~~~~~~~~~ 149 (226)
.....+++|++++=+++-+++
T Consensus 30 ~ls~g~LaGiV~~D~vlTLLI 50 (79)
T PF07213_consen 30 PLSPGLLAGIVAADAVLTLLI 50 (79)
T ss_pred ccCHHHHHHHHHHHHHHHHHH
Confidence 344556666666655544433
No 82
>PHA03207 serine/threonine kinase US3; Provisional
Probab=49.26 E-value=10 Score=33.21 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.1
Q ss_pred CCcCCccccCCCcceEEEEeC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLR 222 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~ 222 (226)
|.-...||+|+||.||++...
T Consensus 94 y~i~~~Lg~G~~g~Vy~~~~~ 114 (392)
T PHA03207 94 YNILSSLTPGSEGEVFVCTKH 114 (392)
T ss_pred eEEEEeecCCCCeEEEEEEEc
Confidence 555568999999999998754
No 83
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=47.63 E-value=14 Score=32.81 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.9
Q ss_pred CccccCCCcceEEEEeCCCC
Q 046926 206 QKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 206 n~lG~GgfG~VYKG~L~~~~ 225 (226)
.+||+|.||.||+++-...|
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg 60 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTG 60 (382)
T ss_pred hhhCCCCceEEEEEEecCCC
Confidence 59999999999999876543
No 84
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=47.31 E-value=19 Score=31.65 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=21.4
Q ss_pred echHHHHHHHhCCCcCCccccCCCcceEEEEeCCC
Q 046926 190 FPYKELALATNDFNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 190 f~~~el~~AT~~F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
++..||.+- +.||+|..|+|||+.....
T Consensus 76 i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t 103 (364)
T KOG0581|consen 76 ISLSDLERL-------GVLGSGNGGTVYKVRHKPT 103 (364)
T ss_pred cCHHHhhhh-------hhcccCCCcEEEEEEEcCC
Confidence 566676543 4899999999999987543
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.69 E-value=5.4 Score=29.43 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=4.9
Q ss_pred ccEEeeehhhHH
Q 046926 133 APVVGLSLGGGF 144 (226)
Q Consensus 133 ~~ii~i~v~~~~ 144 (226)
.+++|+++|+++
T Consensus 68 ~Ii~gv~aGvIg 79 (122)
T PF01102_consen 68 GIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhHHHHHHHHH
Confidence 334444444433
No 86
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=44.99 E-value=14 Score=33.37 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=18.4
Q ss_pred CCcCCccccCCCcceEEEEeCCC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~~~ 224 (226)
|++ +-||.|++|.||||+|.++
T Consensus 120 fd~-~plasaSigQVh~A~l~~G 141 (437)
T TIGR01982 120 FEE-KPLAAASIAQVHRARLVDG 141 (437)
T ss_pred CCC-cceeeeehhheEEEEecCC
Confidence 553 6799999999999999753
No 87
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=44.90 E-value=12 Score=34.04 Aligned_cols=19 Identities=37% Similarity=0.718 Sum_probs=16.7
Q ss_pred CccccCCCcceEEEEeCCC
Q 046926 206 QKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 206 n~lG~GgfG~VYKG~L~~~ 224 (226)
+.||+|-||.|+.|.+.+.
T Consensus 212 ~~LG~G~FG~V~~g~~~~~ 230 (468)
T KOG0197|consen 212 RELGSGQFGEVWLGKWNGS 230 (468)
T ss_pred HHhcCCccceEEEEEEcCC
Confidence 3899999999999998764
No 88
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=43.57 E-value=18 Score=25.66 Aligned_cols=21 Identities=10% Similarity=-0.100 Sum_probs=11.7
Q ss_pred CCCcccEEeeehhhHHHHHHH
Q 046926 129 KNRKAPVVGLSLGGGFLVGGV 149 (226)
Q Consensus 129 ~~~~~~ii~i~v~~~~~~~~~ 149 (226)
.+.+..++|++++++++-+++
T Consensus 14 g~sW~~LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLI 34 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHH
Confidence 455566667666655543333
No 89
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=43.37 E-value=1.3e+02 Score=25.00 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.6
Q ss_pred cCCCcceEeeEeeecccccceeecccc
Q 046926 79 LHLPEFVTFGFSMATGVDFAIFSIYSW 105 (226)
Q Consensus 79 ~~l~~~v~vGFsastg~~~~~~~il~W 105 (226)
..+|+..+.+|+++||...-.|.|-+.
T Consensus 225 ~avP~~f~lS~TgSTGgstN~HEIdnf 251 (255)
T cd06900 225 DAIPENFYLSFTGSTGGSTNTHEIDNF 251 (255)
T ss_pred CCCCccEEEEEEecCCCcccceeecce
Confidence 678999999999999999989988543
No 90
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=39.17 E-value=20 Score=30.40 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=9.4
Q ss_pred HHHHHhhhheeeccC
Q 046926 150 VLIIRLAGIGRKRKE 164 (226)
Q Consensus 150 ~~~~~~~~~~~r~~~ 164 (226)
++++++|+++||++.
T Consensus 275 liiLYiWlyrrRK~s 289 (295)
T TIGR01478 275 LIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHhhccc
Confidence 444555678887654
No 91
>PTZ00370 STEVOR; Provisional
Probab=37.72 E-value=21 Score=30.24 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=9.4
Q ss_pred HHHHHhhhheeeccC
Q 046926 150 VLIIRLAGIGRKRKE 164 (226)
Q Consensus 150 ~~~~~~~~~~~r~~~ 164 (226)
++++++|+++||++.
T Consensus 271 liilYiwlyrrRK~s 285 (296)
T PTZ00370 271 LIILYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHHHHhhcch
Confidence 444555678887654
No 92
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=36.84 E-value=17 Score=32.95 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=15.7
Q ss_pred cCCccccCCCcceEEEEeC
Q 046926 204 DDQKLGQGGFGGVYKGFLR 222 (226)
Q Consensus 204 ~~n~lG~GgfG~VYKG~L~ 222 (226)
-.++||+|+||.||++.-.
T Consensus 71 ~~~~lg~G~~g~vy~a~~~ 89 (478)
T PTZ00267 71 LTTLVGRNPTTAAFVATRG 89 (478)
T ss_pred EEEEEEeCCCcEEEEEEEc
Confidence 3458999999999998654
No 93
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.77 E-value=65 Score=20.82 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=14.3
Q ss_pred CCCCcccEEeeehhhHHHHHHH
Q 046926 128 RKNRKAPVVGLSLGGGFLVGGV 149 (226)
Q Consensus 128 ~~~~~~~ii~i~v~~~~~~~~~ 149 (226)
+..+.++|+.++++.+++++++
T Consensus 8 KGlnPGlIVLlvV~g~ll~flv 29 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLV 29 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHH
Confidence 3455677877777766665554
No 94
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=35.71 E-value=70 Score=24.05 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=27.9
Q ss_pred CeeEEEcCCCCccceEEEEEcCCCcEEEEEEEeCCCCCcccceeEEEeccc
Q 046926 28 SHVGVDINSVQSKKNAWISYNSSTHNLSVAFTGFRNNSVVMQGLDYQVDLR 78 (226)
Q Consensus 28 ~hvgi~~n~~~s~~~~~i~y~~~~~~l~v~~~~~~~~~~~~~~l~~~~~Ls 78 (226)
-+.|||+..+. .-+|+.|...+.|.|.| |..-+++..+|..
T Consensus 48 v~~GiDLs~i~---~~~i~~d~~~~~i~I~L-------P~~~i~~~~id~~ 88 (157)
T PF14014_consen 48 VKAGIDLSKIK---EEDIEVDEDGKTITITL-------PPPEILSVEIDED 88 (157)
T ss_pred EEEEEEhHHCC---cceEEEcCCCCEEEEEC-------CCcEEeeeecCcc
Confidence 46778876555 33488888888999988 3333667777744
No 95
>PTZ00046 rifin; Provisional
Probab=35.33 E-value=12 Score=32.75 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhheeeccCCc
Q 046926 145 LVGGVVLIIRLAGIGRKRKEGD 166 (226)
Q Consensus 145 ~~~~~~~~~~~~~~~~r~~~~~ 166 (226)
++++++++++++.++|+++.++
T Consensus 327 IVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 327 IVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHhhhcchhHH
Confidence 3333444455555888776544
No 96
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=34.15 E-value=13 Score=32.50 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhheeeccCCc
Q 046926 146 VGGVVLIIRLAGIGRKRKEGD 166 (226)
Q Consensus 146 ~~~~~~~~~~~~~~~r~~~~~ 166 (226)
+++++++++++.++|+++.++
T Consensus 323 VLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 323 VLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHhhhcchhHH
Confidence 333444455555888766543
No 97
>PF15102 TMEM154: TMEM154 protein family
Probab=33.83 E-value=66 Score=24.50 Aligned_cols=9 Identities=0% Similarity=-0.160 Sum_probs=3.8
Q ss_pred EEeeehhhH
Q 046926 135 VVGLSLGGG 143 (226)
Q Consensus 135 ii~i~v~~~ 143 (226)
++.+++..+
T Consensus 58 iLmIlIP~V 66 (146)
T PF15102_consen 58 ILMILIPLV 66 (146)
T ss_pred EEEEeHHHH
Confidence 444444433
No 98
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=33.24 E-value=20 Score=33.67 Aligned_cols=19 Identities=47% Similarity=0.781 Sum_probs=15.8
Q ss_pred ccccCCCcceEEEEeCCCC
Q 046926 207 KLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 207 ~lG~GgfG~VYKG~L~~~~ 225 (226)
+||+|.|=+||||.=...|
T Consensus 47 vLGrGafKtVYka~De~~g 65 (632)
T KOG0584|consen 47 VLGRGAFKTVYKAFDEEEG 65 (632)
T ss_pred hcccccceeeeeccccccc
Confidence 8999999999999754443
No 99
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=32.73 E-value=38 Score=31.56 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.1
Q ss_pred CCCcCCccccCCCcceEEEEeCCCC
Q 046926 201 DFNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 201 ~F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
.|++ .-||+|++|.||++++.+.|
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G 144 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNG 144 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCC
Confidence 4666 67999999999999998744
No 100
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=32.67 E-value=19 Score=34.75 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=15.4
Q ss_pred ccccCCCcceEEEEeCC
Q 046926 207 KLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 207 ~lG~GgfG~VYKG~L~~ 223 (226)
+||+|.||.|.+|.+..
T Consensus 117 ~LG~GsFgvV~rg~Wt~ 133 (1039)
T KOG0199|consen 117 LLGEGSFGVVKRGTWTQ 133 (1039)
T ss_pred HhcCcceeeEeeccccC
Confidence 89999999999998764
No 101
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=31.77 E-value=27 Score=33.00 Aligned_cols=17 Identities=47% Similarity=0.743 Sum_probs=15.5
Q ss_pred ccccCCCcceEEEEeCC
Q 046926 207 KLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 207 ~lG~GgfG~VYKG~L~~ 223 (226)
.||+|.||.|+||.+..
T Consensus 303 ~lg~g~fG~v~~~~~~~ 319 (609)
T KOG0200|consen 303 YLGEGAFGQVVKALLFG 319 (609)
T ss_pred eeecccccceEeEEEee
Confidence 89999999999998854
No 102
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=31.58 E-value=36 Score=20.67 Aligned_cols=12 Identities=50% Similarity=1.060 Sum_probs=10.8
Q ss_pred cceEEEEeCCCC
Q 046926 214 GGVYKGFLRETN 225 (226)
Q Consensus 214 G~VYKG~L~~~~ 225 (226)
|-|+||.|-++|
T Consensus 38 GHvFkGiLyDqG 49 (50)
T TIGR01624 38 GHVFKGFLHDQG 49 (50)
T ss_pred ceEEeeEEeccC
Confidence 889999998876
No 103
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=30.84 E-value=16 Score=33.02 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=0.0
Q ss_pred cEEeeehh
Q 046926 134 PVVGLSLG 141 (226)
Q Consensus 134 ~ii~i~v~ 141 (226)
.+++++++
T Consensus 357 vVlgvavl 364 (439)
T PF02480_consen 357 VVLGVAVL 364 (439)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33343333
No 104
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.66 E-value=23 Score=34.28 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=14.8
Q ss_pred CcCCccccCCCcceEEEE
Q 046926 203 NDDQKLGQGGFGGVYKGF 220 (226)
Q Consensus 203 ~~~n~lG~GgfG~VYKG~ 220 (226)
.+.-+||+|.||+||-|.
T Consensus 578 ~ervVLGKGTYG~VYA~R 595 (1226)
T KOG4279|consen 578 NERVVLGKGTYGTVYAAR 595 (1226)
T ss_pred CceEEeecCceeEEEeec
Confidence 345579999999999885
No 105
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=29.23 E-value=43 Score=24.36 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=8.8
Q ss_pred cEEeeehhhHHHHHHH
Q 046926 134 PVVGLSLGGGFLVGGV 149 (226)
Q Consensus 134 ~ii~i~v~~~~~~~~~ 149 (226)
.++.+++|+++.+.+.
T Consensus 84 ~aLp~VIGGLcaL~La 99 (126)
T PF03229_consen 84 FALPLVIGGLCALTLA 99 (126)
T ss_pred cchhhhhhHHHHHHHH
Confidence 4556666666544443
No 106
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=29.11 E-value=45 Score=29.25 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=19.0
Q ss_pred chHHHHHHHhCCCcCCccccCCCcceEEE
Q 046926 191 PYKELALATNDFNDDQKLGQGGFGGVYKG 219 (226)
Q Consensus 191 ~~~el~~AT~~F~~~n~lG~GgfG~VYKG 219 (226)
+++|+.+-|.. +||+|+|+.|--.
T Consensus 74 ~F~d~YkLt~e-----~LGeGAyasVqtc 97 (463)
T KOG0607|consen 74 KFEDMYKLTSE-----LLGEGAYASVQTC 97 (463)
T ss_pred hHHHHHHhHHH-----HhcCccceeeeee
Confidence 46788888865 9999999998544
No 107
>PLN03150 hypothetical protein; Provisional
Probab=28.64 E-value=88 Score=29.66 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=7.2
Q ss_pred cccEEeeehhhHHH
Q 046926 132 KAPVVGLSLGGGFL 145 (226)
Q Consensus 132 ~~~ii~i~v~~~~~ 145 (226)
...+++++++++++
T Consensus 543 ~~~~i~~~~~~~~~ 556 (623)
T PLN03150 543 VGAKIGIAFGVSVA 556 (623)
T ss_pred CceEEEEEhHHHHH
Confidence 34455555555543
No 108
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=28.59 E-value=79 Score=24.73 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=19.6
Q ss_pred CCCCCeeEEEcCCCCccc---eEEEEEcCCCc
Q 046926 24 DPTFSHVGVDINSVQSKK---NAWISYNSSTH 52 (226)
Q Consensus 24 d~~~~hvgi~~n~~~s~~---~~~i~y~~~~~ 52 (226)
|+-+||++||+-.-.... -.|.-||-.++
T Consensus 126 d~~Gnhi~IDLaPgp~g~ygQiI~FgrD~dtk 157 (191)
T COG4282 126 DPRGNHICIDLAPGPTGGYGQIIWFGRDEDTK 157 (191)
T ss_pred cCCCCeEEEecCCCCCCCcceEEEeccccccC
Confidence 788999999985443322 46666776554
No 109
>PHA03291 envelope glycoprotein I; Provisional
Probab=27.89 E-value=35 Score=29.80 Aligned_cols=18 Identities=6% Similarity=0.385 Sum_probs=14.4
Q ss_pred eEEEEEcCCCcEEEEEEE
Q 046926 42 NAWISYNSSTHNLSVAFT 59 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~ 59 (226)
.|||++.......-+.+.
T Consensus 147 RV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 147 RVWVEGATNASLFPLGLA 164 (401)
T ss_pred EEEeCCCcccceEEEeee
Confidence 899999888777766666
No 110
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=27.75 E-value=20 Score=27.71 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCCcccEEeeehhhHHHHHHHH
Q 046926 127 RRKNRKAPVVGLSLGGGFLVGGVV 150 (226)
Q Consensus 127 ~~~~~~~~ii~i~v~~~~~~~~~~ 150 (226)
+.......+++|++|+++.+.++.
T Consensus 123 k~GL~T~tLVGIIVGVLlaIG~ig 146 (162)
T PF05808_consen 123 KDGLSTVTLVGIIVGVLLAIGFIG 146 (162)
T ss_dssp ------------------------
T ss_pred cCCcceeeeeeehhhHHHHHHHHh
Confidence 334455567777777666555443
No 111
>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]
Probab=27.50 E-value=40 Score=22.29 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=13.5
Q ss_pred CCccccCCCcceEEEEeCC
Q 046926 205 DQKLGQGGFGGVYKGFLRE 223 (226)
Q Consensus 205 ~n~lG~GgfG~VYKG~L~~ 223 (226)
..++=+=.+|..|||+|-.
T Consensus 19 k~V~vkLKwg~eYkG~Lvs 37 (79)
T KOG3482|consen 19 KPVLVKLKWGQEYKGTLVS 37 (79)
T ss_pred CeEEEEEecCcEEEEEEEE
Confidence 3455556789999999843
No 112
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=27.41 E-value=35 Score=25.96 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=7.0
Q ss_pred ccEEeeehhhHHHH
Q 046926 133 APVVGLSLGGGFLV 146 (226)
Q Consensus 133 ~~ii~i~v~~~~~~ 146 (226)
.+++++.+.+++.+
T Consensus 120 klilaisvtvv~~i 133 (154)
T PF14914_consen 120 KLILAISVTVVVMI 133 (154)
T ss_pred hhHHHHHHHHHHHH
Confidence 45555555544433
No 113
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=26.61 E-value=82 Score=19.02 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=14.2
Q ss_pred EEEEcCCCcEEEEEE
Q 046926 44 WISYNSSTHNLSVAF 58 (226)
Q Consensus 44 ~i~y~~~~~~l~v~~ 58 (226)
||+||..+..|-+++
T Consensus 2 ki~YD~~~D~lyi~l 16 (50)
T PF10049_consen 2 KIEYDPEADALYIRL 16 (50)
T ss_pred EeEEcCcCCEEEEEE
Confidence 899999999999999
No 114
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=26.56 E-value=25 Score=23.08 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=3.8
Q ss_pred cEEeeehhh
Q 046926 134 PVVGLSLGG 142 (226)
Q Consensus 134 ~ii~i~v~~ 142 (226)
..|+++.++
T Consensus 34 ~aIGvi~gi 42 (68)
T PF04971_consen 34 AAIGVIGGI 42 (68)
T ss_pred hhHHHHHHH
Confidence 344444333
No 115
>PF07472 PA-IIL: Fucose-binding lectin II (PA-IIL); InterPro: IPR010907 This entry represents calcium-mediated lectins. Structures have been determined for both fucose-binding lectin II (PA-IIL) [] and mannose-specific lectin II (RS-IIL) []. These proteins have homologous structures, their monomers consisting of a 9-stranded beta sandwich with Greek-key topology. Each monomer contains two calcium ions that mediate an exceptionally high binding affinity to the monosaccharide ligand in a recognition mode unique among carbohydrate-protein interactions. In Pseudomonas aeruginosa, PA-IIL contributes to the pathogenic virulence of the bacterium, functioning as a tetramer when binding fucose []. In the plant pathogen Ralstonia solanacearum (Pseudomonas solanacearum), RS-IIL recognises fucose, but displays much higher affinity to mannose and fructose, which is opposite to the preference of PA-IIL. ; PDB: 2WRA_A 2WR9_C 1OUX_C 2VUC_B 1GZT_C 2BOJ_D 2JDM_D 2JDH_D 1W8F_D 1UZV_A ....
Probab=25.73 E-value=2.6e+02 Score=20.12 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=32.2
Q ss_pred EEcCCCcEEEEEEEeCCCCCcccceeEEEeccccCCCcceEeeEeee-ccccccee---eccccc
Q 046926 46 SYNSSTHNLSVAFTGFRNNSVVMQGLDYQVDLRLHLPEFVTFGFSMA-TGVDFAIF---SIYSWE 106 (226)
Q Consensus 46 ~y~~~~~~l~v~~~~~~~~~~~~~~l~~~~~Ls~~l~~~v~vGFsas-tg~~~~~~---~il~W~ 106 (226)
.|++....+.|.+...+ || .++.+...+|.. .++.|.-++ .|.-...+ -+|.|.
T Consensus 49 ~l~Sg~Gkv~i~v~~ng--k~-s~l~~~q~~l~~----~~~~~ivgsEdGtD~DYND~ivvLnWp 106 (107)
T PF07472_consen 49 VLNSGSGKVRIEVTANG--KP-SKLRSSQNTLDG----KPYFGIVGSEDGTDNDYNDSIVVLNWP 106 (107)
T ss_dssp EEE-TTSEEEEEEEETT--EE--EEEEEEEEETT----TEEEEEEEEESSSSSSSBSEEEEEEES
T ss_pred EEecCCCeEEEEEEeCC--cc-ccceeeeeeccC----ceeEEEEEcccCCCCCcccEEEEEecc
Confidence 38888888888887766 43 346777777665 677775444 44322222 345664
No 116
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=22.95 E-value=46 Score=31.93 Aligned_cols=21 Identities=38% Similarity=0.803 Sum_probs=17.6
Q ss_pred CCcCCccccCCCcceEEEEeC
Q 046926 202 FNDDQKLGQGGFGGVYKGFLR 222 (226)
Q Consensus 202 F~~~n~lG~GgfG~VYKG~L~ 222 (226)
..-.++||-|-||.||-|++.
T Consensus 269 ItMkhKLGGGQYGeVYeGvWK 289 (1157)
T KOG4278|consen 269 ITMKHKLGGGQYGEVYEGVWK 289 (1157)
T ss_pred eeeeeccCCCcccceeeeeee
Confidence 344679999999999999875
No 117
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=22.90 E-value=46 Score=32.21 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=16.9
Q ss_pred CCccccCCCcceEEEEeCCC
Q 046926 205 DQKLGQGGFGGVYKGFLRET 224 (226)
Q Consensus 205 ~n~lG~GgfG~VYKG~L~~~ 224 (226)
++.|-+|||+.||-+.....
T Consensus 42 ~~vLAEGGFa~VYla~~~~~ 61 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVKG 61 (738)
T ss_pred EEEEccCCcEEEEEEEecCC
Confidence 45899999999999987654
No 118
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=22.45 E-value=44 Score=34.52 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=22.1
Q ss_pred HHhCCCcCCccccCCCcceEEEEeCCCC
Q 046926 198 ATNDFNDDQKLGQGGFGGVYKGFLRETN 225 (226)
Q Consensus 198 AT~~F~~~n~lG~GgfG~VYKG~L~~~~ 225 (226)
.|-.+...+.||.|-||.||-++=.+.|
T Consensus 1233 V~~rWqrg~~Ig~G~fG~VYtavN~~tG 1260 (1509)
T KOG4645|consen 1233 VTFRWQRGNFIGGGTFGKVYTAVNLDTG 1260 (1509)
T ss_pred ceeeeccccccCCcceeeeEEeecCCcc
Confidence 3445677899999999999998766554
No 119
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=21.43 E-value=24 Score=31.34 Aligned_cols=7 Identities=43% Similarity=0.734 Sum_probs=3.2
Q ss_pred CCCcceE
Q 046926 211 GGFGGVY 217 (226)
Q Consensus 211 GgfG~VY 217 (226)
||-..||
T Consensus 427 g~~s~~~ 433 (436)
T PTZ00208 427 GGVSSVK 433 (436)
T ss_pred CCCCcee
Confidence 4444444
No 120
>COG4540 gpV Phage P2 baseplate assembly protein gpV [General function prediction only]
Probab=21.05 E-value=62 Score=25.32 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=16.1
Q ss_pred eEEEEEcCCCcEEEEEEE
Q 046926 42 NAWISYNSSTHNLSVAFT 59 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~ 59 (226)
-+|++||...++|.|...
T Consensus 95 Ga~~~YD~Aah~ltV~g~ 112 (184)
T COG4540 95 GAAFEYDRAAHRLTVNGG 112 (184)
T ss_pred CccEEeehhcceEEEecC
Confidence 699999999999999764
No 121
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.42 E-value=86 Score=19.57 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=18.1
Q ss_pred eEEEEEcCCCcEEEEEEEeCC
Q 046926 42 NAWISYNSSTHNLSVAFTGFR 62 (226)
Q Consensus 42 ~~~i~y~~~~~~l~v~~~~~~ 62 (226)
-|+|.|+..++...++....+
T Consensus 6 iAk~~~~~~~~~W~lyw~~~~ 26 (57)
T PF11225_consen 6 IAKLTFDKTTGCWKLYWMDHD 26 (57)
T ss_pred eEEEEEeCCCCEEEEEEECCC
Confidence 589999999999999986554
Done!