BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046927
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 57 PEDKEVPETFNQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFS---SFF 113
PE+K + WP P + E+ EYA+ + LA K+ + +++ LGL R
Sbjct: 149 PEEKR---DLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGL 205
Query: 114 EDPTRSVRLNHYPPCPAPHLALGVGRHKDVGALTILAQDDVGGLEVKRKSDGEWVRIKPT 173
E+ +++N+YP CP P LALGV H DV ALT + + V GL++ +G+WV K
Sbjct: 206 EELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFY--EGKWVTAKCV 263
Query: 174 SDAYIINVGDILQVWSNDVYESVEHRVTVNSEKERFSIPFFFSPPHCTMV-KPLGELTNE 232
D+ ++++GD L++ SN Y+S+ HR VN EK R S F PP +V KPL E+ +
Sbjct: 264 PDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSV 323
Query: 233 QNPAKY 238
++PAK+
Sbjct: 324 ESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 57 PEDKEVPETFNQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFS---SFF 113
PE+K + WP P + E+ EYA+ + LA K+ + +++ LGL R
Sbjct: 148 PEEKR---DLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGL 204
Query: 114 EDPTRSVRLNHYPPCPAPHLALGVGRHKDVGALTILAQDDVGGLEVKRKSDGEWVRIKPT 173
E+ +++N+YP CP P LALGV H DV ALT + + V GL++ +G+WV K
Sbjct: 205 EELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFY--EGKWVTAKCV 262
Query: 174 SDAYIINVGDILQVWSNDVYESVEHRVTVNSEKERFSIPFFFSPPHCTMV-KPLGELTNE 232
D+ ++++GD L++ SN Y+S+ HR VN EK R S F PP +V KPL E+ +
Sbjct: 263 PDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSV 322
Query: 233 QNPAKY 238
++PAK+
Sbjct: 323 ESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 69 WPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFS---SFFEDPTRSVRLNHY 125
WP P + E+ EYA+ + LA K+ + +++ LGL R E+ ++N+Y
Sbjct: 158 WPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYY 217
Query: 126 PPCPAPHLALGVGRHKDVGALTILAQDDVGGLEVKRKSDGEWVRIKPTSDAYIINVGDIL 185
P CP P LALGV H DV ALT + + V GL++ +G+WV K D+ + ++GD L
Sbjct: 218 PKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFY--EGKWVTAKCVPDSIVXHIGDTL 275
Query: 186 QVWSNDVYESVEHRVTVNSEKERFSIPFFFSPPHCTMV-KPLGELTNEQNPAKY 238
++ SN Y+S+ HR VN EK R S F PP +V KPL E + ++PAK+
Sbjct: 276 EILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKF 329
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 6/181 (3%)
Query: 65 TFNQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFSSFF---EDPTRSVR 121
++ PD E RE ++A+ +EKLA +L++L+ +LGL + F + P +
Sbjct: 99 NISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTK 158
Query: 122 LNHYPPCPAPHLALGVGRHKDVGALTILAQDD-VGGLEVKRKSDGEWVRIKPTSDAYIIN 180
+++YPPCP P L G+ H D G + +L QDD V GL++ + DG+W+ + P + ++N
Sbjct: 159 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK--DGQWIDVPPXRHSIVVN 216
Query: 181 VGDILQVWSNDVYESVEHRVTVNSEKERFSIPFFFSPPHCTMVKPLGELTNEQNPAKYRA 240
+GD L+V +N Y+SV HRV + R S+ F++P ++ P L ++ +
Sbjct: 217 LGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQV 276
Query: 241 Y 241
Y
Sbjct: 277 Y 277
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 7/177 (3%)
Query: 67 NQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFSSFFEDPTRSVRLNHYP 126
N WP P + ++ K++E IA L L F +D +RL HYP
Sbjct: 118 NVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYP 177
Query: 127 PCPAPHLALGVGRHKDVGALTILAQDDVGGLEVKRKSDGEWVRIKPTSDAYIINVGDILQ 186
P P + G H D+ +T+L + GGLEV + DG+W+ I P +IN+GD L+
Sbjct: 178 PIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDR-DGQWLPINPPPGCLVINIGDXLE 236
Query: 187 VWSNDVYESVEHRVTVNSEKE-----RFSIPFFFSPPHCTMVKPLGELTNEQNPAKY 238
+N+V S HRV VN E R+S PFF +K L +NP +Y
Sbjct: 237 RLTNNVLPSTVHRV-VNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 69 WPDYPPELRESCEEYAREVEKLAYKLMELI----------ALSLGLPASRFSSFFEDPTR 118
W P LR + Y + LA +L+E I S+ LP +S
Sbjct: 95 WGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSH----KT 150
Query: 119 SVRLNHYPPCPAPH--LALGVGRHKDVGALTILAQDDVGGLEVKRKSDGEWVRIKPTSDA 176
+R+ HYPP A+ H+D+ +T+L + GL+VK K DG W+ +
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAK-DGSWLDVPSDFGN 209
Query: 177 YIINVGDILQVWSNDVYESVEHRVT----VNSEKERFSIPFFFSPPHCTMV 223
IIN+GD LQ S+ + S HRV + K R S+P F PH ++V
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLH-PHPSVV 259
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 19/175 (10%)
Query: 67 NQWPDYP--PELRESCEEYAREVEKLAYKLMELIALSLGLPASRFSSFF--EDPTRSVRL 122
N WPD P ++ E+Y +V L+ L++ AL+LG + F+ F +D SV L
Sbjct: 127 NVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVL 186
Query: 123 NHYPPC-PAPHLALGVGR---------HKDVGALTILAQDDVGGLEVKRKSDGEWVRIKP 172
YP P P A+ H+DV +T+L Q +V L+V+ + + I+
Sbjct: 187 IRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG--YQDIEA 244
Query: 173 TSDAYIINVGDILQVWSNDVYESVEHRVT-VNSEKERFSIPFFFSPPHCTMVKPL 226
Y+IN G + +N+ Y++ HRV VN+E++ S+PFF + + +++ P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSVIDPF 297
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 19/175 (10%)
Query: 67 NQWPDYP--PELRESCEEYAREVEKLAYKLMELIALSLGLPASRFSSFF--EDPTRSVRL 122
N WPD P ++ E+Y +V L+ L++ AL+LG + F+ F +D SV L
Sbjct: 127 NVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVL 186
Query: 123 NHYPPC-PAPHLALGVGR---------HKDVGALTILAQDDVGGLEVKRKSDGEWVRIKP 172
YP P P A+ H+DV +T+L Q +V L+V+ + + I+
Sbjct: 187 IRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG--YQDIEA 244
Query: 173 TSDAYIINVGDILQVWSNDVYESVEHRVT-VNSEKERFSIPFFFSPPHCTMVKPL 226
Y+IN G + +N+ Y++ HRV VN+E++ S+PFF + + +++ P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSVIDPF 297
>pdb|1TJY|A Chain A, Crystal Structure Of Salmonella Typhimurium Ai-2 Receptor
Lsrb In Complex With R-Thmf
pdb|1TM2|A Chain A, Crystal Structure Of The Apo Form Of The Salmonella
Typhimurium Ai-2 Receptor Lsrb
Length = 316
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 171 KPTSDAYIINVGDILQVWSNDVYESVEHRVTVNSEKERFSIPFFFSPPHCT 221
KP +Y IN G Q+ S V E H+V +KE+ + FF+S P T
Sbjct: 96 KPECRSYYINQGTPKQLGSMLV-EMAAHQV----DKEKAKVAFFYSSPTVT 141
>pdb|3E5L|A Chain A, Crystal Structure Of Cyp105p1 H72a Mutant
Length = 403
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 129 PAPHLALGVGRHKDVG 144
PAPHLA G G H+ +G
Sbjct: 335 PAPHLAFGFGAHQCIG 350
>pdb|3ABA|A Chain A, Crystal Structure Of Cyp105p1 In Complex With Filipin I
Length = 403
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 129 PAPHLALGVGRHKDVG 144
PAPHLA G G H+ +G
Sbjct: 335 PAPHLAFGFGAHQCIG 350
>pdb|3E5J|A Chain A, Crystal Structure Of Cyp105p1 Wild-type Ligand-free Form
pdb|3E5K|A Chain A, Crystal Structure Of Cyp105p1 Wild-Type 4-Phenylimidazole
Complex
Length = 403
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 129 PAPHLALGVGRHKDVG 144
PAPHLA G G H+ +G
Sbjct: 335 PAPHLAFGFGAHQCIG 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,773,074
Number of Sequences: 62578
Number of extensions: 365204
Number of successful extensions: 882
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 20
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)