BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046929
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 28/245 (11%)
Query: 1 MGSFCCCPCIEEFEDYTNPSNSIYRNCICIRFFFHQLLNGYGAMFHRLEGRSVPISNLGT 60
MG C +E+ ++Y NP++S+YRNC CIR H LN Y ++F R E RS+P +
Sbjct: 1 MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLP----SS 56
Query: 61 ASSASSVPATTLPDNSLNDNQFSVSRPATYDTDQRYSRLQRDGLVSRRDKSMIYFQEDAQ 120
+ +S+ +++ DN L++ S RP YD D RY R LVSRR+K + E+ +
Sbjct: 57 VQATASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVE 112
Query: 121 PIRRNMSSSGRESLGFG------KKQNVVDSEED--------CKLVDSESSDKALATKAA 166
P+R + S + ES G G K + D + +++ S S ++
Sbjct: 113 PLRSD-SDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENM 171
Query: 167 YGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226
Y +EDEDVCPTCL+EYT ENPKI T+CSHHFHL CIYEW+ERSE+CP+CGK ME
Sbjct: 172 Y-----ILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVME 226
Query: 227 FCESP 231
F E+P
Sbjct: 227 FNETP 231
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
+D C CL+ +T ++P T C H +HL CI EW +RS+ CPIC
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPIC 86
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%)
Query: 139 KQNVVDSEEDCKLVDSESSDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTR 198
K V+D E C L S+ + ++ TEDE C CL++ T T
Sbjct: 169 KYKVLDPENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLP 228
Query: 199 CSHHFHLGCIYEWLERSESCPIC 221
C H FH GCI WL + +CP+C
Sbjct: 229 CLHQFHAGCIDPWLRQQGTCPVC 251
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 147 EDCKLVDSESSDKALATKAAYG--PYTQTSTEDEDV-CPTCLDEYTPENPKITTRCSHHF 203
ED LVD E A KA P T S+ D+ CP CL E+ E I C H F
Sbjct: 51 EDLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLF 110
Query: 204 HLGCIYEWLERSESCPICGKEM 225
H CI WL ++ SCP+C E+
Sbjct: 111 HSNCILPWLSKTNSCPLCRHEL 132
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227
+D C CL+ + +P T C H +HL CI EW +RS CP+C + +
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISL 79
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
+ D+C C Y N + T CSH FH GC+ +WL E+CP+C
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
+ D+C C Y N + T CSH FH GC+ +WL E+CP+C
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 147 EDCKLVDSESSDKALATKAAYGPYTQT---STEDEDVCPTCLDEYTPENPKITTRCSHHF 203
ED LVD E A KA +T S++ E CP CL E+ E I C H F
Sbjct: 51 EDLGLVDWEHHLPPPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLF 110
Query: 204 HLGCIYEWLERSESCPICGKEM 225
H CI WL ++ SCP+C E+
Sbjct: 111 HSNCILPWLSKTNSCPLCRHEL 132
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 164 KAAYGPYTQTSTEDED----VCPTCLDEYTP--ENPKITTR-----CSHHFHLGCIYEWL 212
K Y + S E D +C C+D+ P E K+ R C H H GC+ W+
Sbjct: 299 KKLYEKLSDVSEEQLDDTDSMCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWM 358
Query: 213 ERSESCPIC 221
ERS++CPIC
Sbjct: 359 ERSQTCPIC 367
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 172 QTSTEDEDVCPTCLDE--YTPENPKITTR--------CSHHFHLGCIYEWLERSESCPIC 221
Q S D+++C C+DE ++P + C H HL C+ W+ERS++CPIC
Sbjct: 340 QNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPIC 399
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 114 YFQE-DAQPIRRNMSSSGRESLGFGKKQ-NVVDSEEDCKLVDSESSDKALATKAAYGPYT 171
YF E D +P+ R L + N +D E+ +VD + A K A
Sbjct: 4 YFDEHDCEPLDRERDPRTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTAVENLP 63
Query: 172 QT---STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
+T ++ E CP CL E+ E I C H FH CI WL ++ SCP+C E+
Sbjct: 64 RTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 120
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 157 SDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE 216
+DK T TQ CP C ++YT E C+H FH CI WLE +
Sbjct: 205 ADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHD 264
Query: 217 SCPICGKEM 225
+CP+C K +
Sbjct: 265 TCPVCRKSL 273
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 157 SDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE 216
+DK T TQ + CP C ++YT E C+H FH CI WLE +
Sbjct: 204 ADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHD 263
Query: 217 SCPICGKEM 225
+CP+C K +
Sbjct: 264 TCPVCRKSL 272
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 157 SDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE 216
+DK P T+ CP C D+Y C+H FH GCI WLE+ +
Sbjct: 208 ADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHD 267
Query: 217 SCPICGKEM 225
SCP+C K +
Sbjct: 268 SCPVCRKSL 276
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 157 SDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE 216
+DK P T+ CP C D+Y C+H FH GCI WLE+ +
Sbjct: 205 ADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHD 264
Query: 217 SCPICGKEM 225
SCP+C K +
Sbjct: 265 SCPVCRKSL 273
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 181 CPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
CP CL E+ + C H FH GCI WL ++ SCP+C E+
Sbjct: 79 CPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLEL 123
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 181 CPTCLDEY-TPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
C CL ++ + E ++ +C H FH+GCI +WLE+ +CP+C
Sbjct: 123 CSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 164
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 180 VCPTCLDEY-TPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
+CP CL EY + E + C H FH+ CI EWL+ SCP+C
Sbjct: 252 ICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVC 294
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
C C+ EYT N CSH +H+ CI WL + +CPIC + +
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGK 223
C C+ EYT N CSH +H+ CI WL + +CPIC +
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRR 588
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 181 CPTCLDEYTP-ENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
C CL ++ E ++ +C H FH+GCI +WLE+ +CP+C
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 165
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
C C+ EYT N CSH +H+ CI WL + +CPIC + +
Sbjct: 567 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 612
>sp|Q2TA44|RN148_BOVIN RING finger protein 148 OS=Bos taurus GN=RNF148 PE=2 SV=1
Length = 303
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
DED C C D Y P++ C H FH CI WL +CP+C
Sbjct: 252 DEDNCVVCFDIYKPQDVVRILTCKHIFHKACIDPWLLAHRTCPMC 296
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 174 STEDEDVCPTCLDEY-TPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
++E+ D C CL ++ E + C H FHL CI WL R SCP+C +++
Sbjct: 189 ASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana
GN=ATL21C PE=3 SV=1
Length = 366
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 164 KAAYGPYTQTSTEDEDVCPTCLDEY-TPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
K G + S + VCP CL EY + E + C H FH+ CI WL+ SCP+C
Sbjct: 303 KMELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLKIHGSCPLC 361
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
C C+ EYT N CSH +H+ CI WL + +CPIC + +
Sbjct: 702 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 747
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 181 CPTCLDEYTPENP-KITTRCSHHFHLGCIYEWLERSESCPIC 221
C CL E+T E+ ++ +CSH FH+ CI WL + +CP+C
Sbjct: 122 CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLC 163
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
+ D+C C Y + T CSH FH GC+ +WL E+CP+C
Sbjct: 532 KHNDICAIC---YQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLC 574
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 177 DEDVCPTCLDEY-TPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
++ VCP CL EY T E + C H FH CI WL+ SCP+C
Sbjct: 323 NDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVC 368
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
C C+ EYT N CSH +H+ CI WL + +CPIC + +
Sbjct: 584 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 629
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
+ED C C D Y P++ C H FH CI WL +CP+C
Sbjct: 254 NEDNCVVCFDTYKPQDVVRILTCKHFFHKACIDPWLLAHRTCPMC 298
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 181 CPTCLDEYTP-ENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
CP CL+E+ E+ ++ +C+H FH+ CI WL +CP+C
Sbjct: 177 CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLC 218
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 168 GPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
G ++ D D C C++ Y P + C H FH CI WL +CP+C
Sbjct: 290 GKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMC 343
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 167 YGPYTQTSTEDEDVCPTCLDEYT-PENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
YG T S E C CL+E++ + ++ CSH FHL CI WL + +CP+C + +
Sbjct: 194 YGNVT-ISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 181 CPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
CP C ++YT C+H FH CI WLE+ ++CP+C K +
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 177 DEDVCPTCLDEYTP-ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCESP 231
D C CL+E+ E+ ++ +CSH FHL CI WL ++CP+C + P
Sbjct: 131 DGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEP 186
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 181 CPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
CP C ++YT C+H FH CI WLE+ ++CP+C K +
Sbjct: 227 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 181 CPTCLDEYTP-ENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
CP CL+E+ E ++ +C H FH GCI WL +CP+C
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLC 159
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 173 TSTEDEDV-CPTCLDEY-TPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
T T E V C CL ++ E + C H FHL CI +WL R SCP+C + +
Sbjct: 167 TDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRRHL 221
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 165 AAYGPYTQTSTEDEDVCPT--------CLDEYTPENPKITTRCSHHFHLGCIYEWLERSE 216
AA GP +T + +D P C + + +N ++ +C H FH GC +WL+
Sbjct: 1907 AAAGPSARTKGQKKDDVPAPDGNSCEICHEIFKSKNMRVL-KCGHKFHKGCFKQWLKGQS 1965
Query: 217 SCPICG 222
+CP CG
Sbjct: 1966 TCPTCG 1971
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 174 STEDEDVCPTCLDEY-TPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225
++ ++D C CL ++ E + C H FHL CI WL R SCP+C +++
Sbjct: 184 ASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 171 TQTSTEDE-DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221
TQ E D+C C Y + T CSH FH GC+ +WL ++CP+C
Sbjct: 526 TQEQLEKHNDICAIC---YQDMKSAVITPCSHFFHAGCLKKWLYVQDTCPLC 574
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 155 ESSDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER 214
E DK A K + E+E C C EY E +T C+H F CI EW++R
Sbjct: 380 EEKDKVQAQKEEVLSHMNDLLENELQCIIC-SEYFIE--AVTLNCAHSFCSFCINEWMKR 436
Query: 215 SESCPICGKEME 226
CPIC K++E
Sbjct: 437 KVECPICRKDIE 448
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 181 CPTCLDEYT-PENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227
C CL E++ E+ ++ RCSH FH CI WL+ +CP+C + F
Sbjct: 157 CSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITF 204
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 155 ESSDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER 214
E DK A K + E+E C C EY E +T C+H F CI EW++R
Sbjct: 379 EEKDKVQAQKEEVLSHMNDVLENELQCIIC-SEYFIEA--VTLNCAHSFCSFCISEWMKR 435
Query: 215 SESCPICGKEME 226
CPIC K++E
Sbjct: 436 KVECPICRKDIE 447
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 181 CPTCLDEYTPENP-KITTRCSHHFHLGCIYEWLERSESCPIC 221
C CL E+ E +I CSH FH+ CI WL+ + +CP+C
Sbjct: 138 CSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLC 179
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 157 SDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE 216
+DK P T+ CP C ++Y C+H FH CI WLE+ +
Sbjct: 207 ADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD 266
Query: 217 SCPICGKEM 225
SCP+C K +
Sbjct: 267 SCPVCRKSL 275
>sp|Q5REG4|DTX3_PONAB Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii GN=DTX3
PE=2 SV=1
Length = 347
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGK 223
E E CP CL E +N K +C H F GCI L+ ++CP+CG+
Sbjct: 159 EQESTCPICLGEI--QNAKTLEKCRHSFCEGCITRALQVKKACPMCGR 204
>sp|Q8N9I9|DTX3_HUMAN Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens GN=DTX3
PE=1 SV=2
Length = 347
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGK 223
E E CP CL E +N K +C H F GCI L+ ++CP+CG+
Sbjct: 159 EQESTCPICLGEI--QNAKTLEKCRHSFCEGCITRALQVKKACPMCGR 204
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 156 SSDKALATKA-------AYGPYTQTSTEDEDVCPTCLDEYTP-ENPKITTRCSHHFHLGC 207
SS+K + KA +Y P DE+ C CL ++ E ++ +C+H FH+ C
Sbjct: 104 SSNKGIKKKALRMFPVVSYSPEMNLPGLDEE-CVICLSDFVSGEQLRLLPKCNHGFHVRC 162
Query: 208 IYEWLERSESCPIC 221
I +WL++ +CP C
Sbjct: 163 IDKWLQQHLTCPKC 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,780,837
Number of Sequences: 539616
Number of extensions: 3531500
Number of successful extensions: 10308
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 9870
Number of HSP's gapped (non-prelim): 587
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)