Query 046929
Match_columns 231
No_of_seqs 247 out of 1672
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.8E-17 1.3E-21 118.1 4.6 75 150-227 15-89 (91)
2 1iym_A EL5; ring-H2 finger, ub 99.7 5.4E-17 1.9E-21 106.0 4.7 52 176-227 3-55 (55)
3 2kiz_A E3 ubiquitin-protein li 99.6 2.1E-16 7.2E-21 108.0 6.3 56 173-228 9-64 (69)
4 1x4j_A Ring finger protein 38; 99.6 4.6E-17 1.6E-21 113.2 2.3 55 174-228 19-73 (75)
5 2ect_A Ring finger protein 126 99.6 2.8E-16 9.5E-21 109.9 5.1 57 173-229 10-66 (78)
6 2ep4_A Ring finger protein 24; 99.6 3.1E-16 1.1E-20 108.6 5.3 55 173-227 10-64 (74)
7 2ecl_A Ring-box protein 2; RNF 99.6 6E-16 2E-20 109.4 3.9 53 176-228 13-77 (81)
8 2ecm_A Ring finger and CHY zin 99.6 1.1E-15 3.9E-20 99.5 4.7 51 176-226 3-54 (55)
9 3dpl_R Ring-box protein 1; ubi 99.5 2.4E-15 8E-20 111.7 4.4 54 176-229 35-103 (106)
10 2ea6_A Ring finger protein 4; 99.5 3.6E-15 1.2E-19 101.4 4.4 55 173-227 10-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.5 1.8E-15 6E-20 103.7 2.9 56 174-229 6-65 (71)
12 2djb_A Polycomb group ring fin 99.5 1.4E-14 4.7E-19 99.8 6.0 55 173-229 10-64 (72)
13 2d8s_A Cellular modulator of i 99.5 1.2E-14 4.2E-19 102.5 4.6 56 173-229 10-72 (80)
14 1v87_A Deltex protein 2; ring- 99.5 1.2E-14 4E-19 108.8 4.8 52 177-228 24-95 (114)
15 2d8t_A Dactylidin, ring finger 99.5 1E-14 3.6E-19 100.2 4.1 51 174-227 11-61 (71)
16 2xeu_A Ring finger protein 4; 99.5 5.6E-15 1.9E-19 99.0 2.5 53 177-229 2-58 (64)
17 1chc_A Equine herpes virus-1 r 99.5 1.3E-14 4.6E-19 98.5 4.5 50 176-227 3-52 (68)
18 2ct2_A Tripartite motif protei 99.5 3.8E-14 1.3E-18 100.9 6.2 56 173-228 10-69 (88)
19 2yur_A Retinoblastoma-binding 99.5 4.7E-14 1.6E-18 97.7 6.0 54 173-229 10-66 (74)
20 2ecn_A Ring finger protein 141 99.5 1.3E-14 4.3E-19 99.3 2.8 52 174-229 11-62 (70)
21 2ysl_A Tripartite motif-contai 99.5 4.7E-14 1.6E-18 97.1 5.6 54 173-229 15-71 (73)
22 2ecy_A TNF receptor-associated 99.5 5.2E-14 1.8E-18 95.2 5.2 53 174-229 11-64 (66)
23 4a0k_B E3 ubiquitin-protein li 99.5 6.1E-15 2.1E-19 111.2 0.5 53 177-229 47-114 (117)
24 2csy_A Zinc finger protein 183 99.5 5.9E-14 2E-18 98.8 5.4 51 173-226 10-60 (81)
25 2ecw_A Tripartite motif-contai 99.4 2.4E-13 8.1E-18 95.8 6.6 53 173-228 14-72 (85)
26 4ayc_A E3 ubiquitin-protein li 99.4 4.9E-14 1.7E-18 109.2 2.2 49 176-227 51-99 (138)
27 1t1h_A Gspef-atpub14, armadill 99.4 1.8E-13 6E-18 95.5 4.8 51 175-228 5-56 (78)
28 2ecv_A Tripartite motif-contai 99.4 3.2E-13 1.1E-17 95.1 6.2 54 173-229 14-73 (85)
29 2ysj_A Tripartite motif-contai 99.4 5E-13 1.7E-17 89.4 6.1 46 173-221 15-63 (63)
30 2egp_A Tripartite motif-contai 99.4 9E-14 3.1E-18 97.0 2.4 53 173-228 7-66 (79)
31 3lrq_A E3 ubiquitin-protein li 99.4 1.3E-13 4.6E-18 101.0 2.9 50 176-228 20-71 (100)
32 2ct0_A Non-SMC element 1 homol 99.4 5.2E-13 1.8E-17 92.5 5.6 55 173-229 10-66 (74)
33 3ztg_A E3 ubiquitin-protein li 99.4 7E-13 2.4E-17 95.3 5.7 51 173-226 8-61 (92)
34 2ecj_A Tripartite motif-contai 99.3 8.8E-13 3E-17 86.5 5.0 46 173-221 10-58 (58)
35 1g25_A CDK-activating kinase a 99.3 7.5E-13 2.5E-17 89.2 4.0 53 177-229 2-57 (65)
36 2y43_A E3 ubiquitin-protein li 99.3 4.8E-13 1.6E-17 97.6 3.1 49 177-227 21-69 (99)
37 4ap4_A E3 ubiquitin ligase RNF 99.3 4.3E-13 1.5E-17 102.2 2.8 53 176-228 5-61 (133)
38 2ckl_A Polycomb group ring fin 99.3 1E-12 3.4E-17 97.4 4.0 50 176-227 13-62 (108)
39 3fl2_A E3 ubiquitin-protein li 99.3 1.3E-12 4.5E-17 99.2 3.2 49 176-227 50-99 (124)
40 1jm7_A BRCA1, breast cancer ty 99.3 3.3E-12 1.1E-16 94.8 4.8 48 178-228 21-71 (112)
41 4ap4_A E3 ubiquitin ligase RNF 99.3 1.7E-12 5.8E-17 98.8 2.9 55 175-229 69-127 (133)
42 3hct_A TNF receptor-associated 99.3 2.2E-12 7.7E-17 97.1 3.4 53 173-228 13-66 (118)
43 2kr4_A Ubiquitin conjugation f 99.2 8.8E-12 3E-16 88.7 5.4 52 174-228 10-61 (85)
44 2ckl_B Ubiquitin ligase protei 99.2 2.7E-12 9.2E-17 102.1 2.7 50 176-227 52-102 (165)
45 3l11_A E3 ubiquitin-protein li 99.2 1.4E-12 4.6E-17 97.7 0.7 50 174-226 11-61 (115)
46 1bor_A Transcription factor PM 99.2 2.9E-12 9.8E-17 84.0 1.7 49 175-229 3-51 (56)
47 1rmd_A RAG1; V(D)J recombinati 99.2 4.5E-12 1.5E-16 95.0 2.9 50 176-228 21-71 (116)
48 1z6u_A NP95-like ring finger p 99.2 8.8E-12 3E-16 97.9 4.3 50 176-228 76-126 (150)
49 2vje_A E3 ubiquitin-protein li 99.2 8.6E-12 2.9E-16 84.0 3.6 48 176-226 6-56 (64)
50 1wgm_A Ubiquitin conjugation f 99.2 2.2E-11 7.5E-16 88.9 5.5 52 174-228 18-70 (98)
51 1e4u_A Transcriptional repress 99.2 2.7E-11 9.4E-16 84.8 5.8 54 174-228 7-63 (78)
52 2kre_A Ubiquitin conjugation f 99.2 1.6E-11 5.5E-16 90.0 4.4 52 174-228 25-76 (100)
53 3knv_A TNF receptor-associated 99.1 7.1E-12 2.4E-16 97.5 1.7 50 175-227 28-78 (141)
54 2vje_B MDM4 protein; proto-onc 99.1 2E-11 6.8E-16 81.9 3.3 49 175-226 4-55 (63)
55 1jm7_B BARD1, BRCA1-associated 99.1 1.7E-11 5.9E-16 92.1 1.5 48 176-228 20-68 (117)
56 2y1n_A E3 ubiquitin-protein li 99.1 9.5E-11 3.3E-15 104.7 5.2 47 178-227 332-379 (389)
57 4ic3_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 83.4 1.6 44 177-227 23-67 (74)
58 2yu4_A E3 SUMO-protein ligase 99.0 1.1E-10 3.6E-15 84.5 3.5 50 175-227 4-63 (94)
59 3hcs_A TNF receptor-associated 99.0 1.3E-10 4.4E-15 92.7 3.4 52 174-228 14-66 (170)
60 3k1l_B Fancl; UBC, ring, RWD, 99.0 1.4E-10 4.9E-15 101.3 2.3 55 174-228 304-374 (381)
61 2c2l_A CHIP, carboxy terminus 98.9 5.5E-10 1.9E-14 95.0 5.2 53 173-228 203-256 (281)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.9 6.4E-10 2.2E-14 73.8 4.1 51 175-228 3-60 (60)
63 2ea5_A Cell growth regulator w 98.9 1.3E-09 4.3E-14 74.2 5.4 48 173-227 10-58 (68)
64 2ecg_A Baculoviral IAP repeat- 98.9 8.5E-10 2.9E-14 76.3 3.2 43 178-227 25-68 (75)
65 2f42_A STIP1 homology and U-bo 98.8 1.9E-09 6.5E-14 86.8 4.3 53 173-228 101-154 (179)
66 2yho_A E3 ubiquitin-protein li 98.8 9.1E-10 3.1E-14 77.1 1.2 43 177-226 17-60 (79)
67 2bay_A PRE-mRNA splicing facto 98.8 2.4E-09 8.3E-14 71.2 2.7 49 178-229 3-52 (61)
68 1wim_A KIAA0161 protein; ring 98.7 4E-09 1.4E-13 75.9 2.4 49 176-224 3-61 (94)
69 3htk_C E3 SUMO-protein ligase 98.7 4.8E-09 1.6E-13 88.8 3.1 53 174-228 177-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.6 9.7E-09 3.3E-13 90.8 1.2 45 176-227 293-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 2.9E-07 9.9E-12 66.4 3.1 46 180-227 3-49 (101)
72 3nw0_A Non-structural maintena 98.0 2.9E-06 1E-10 71.2 3.6 50 177-228 179-230 (238)
73 2ko5_A Ring finger protein Z; 96.7 0.00068 2.3E-08 48.0 2.2 51 173-228 23-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.8 0.0051 1.7E-07 44.0 2.7 36 177-212 2-38 (101)
75 2lri_C Autoimmune regulator; Z 94.8 0.028 9.7E-07 37.3 3.7 48 175-225 9-60 (66)
76 1wil_A KIAA1045 protein; ring 92.6 0.15 5.1E-06 35.3 4.1 35 176-211 13-47 (89)
77 1fp0_A KAP-1 corepressor; PHD 91.0 0.14 4.9E-06 35.8 2.8 54 173-229 20-77 (88)
78 2ysm_A Myeloid/lymphoid or mix 90.4 0.085 2.9E-06 38.3 1.2 39 175-213 4-42 (111)
79 2l5u_A Chromodomain-helicase-D 89.9 0.13 4.6E-06 33.3 1.7 48 174-224 7-58 (61)
80 1f62_A Transcription factor WS 89.0 0.21 7.1E-06 30.9 2.1 44 180-223 2-49 (51)
81 1mm2_A MI2-beta; PHD, zinc fin 88.9 0.13 4.5E-06 33.3 1.1 48 175-225 6-57 (61)
82 1we9_A PHD finger family prote 88.7 0.08 2.7E-06 34.5 -0.0 50 175-224 3-58 (64)
83 3m62_A Ubiquitin conjugation f 87.5 0.37 1.3E-05 47.4 3.7 52 174-228 887-939 (968)
84 2k16_A Transcription initiatio 86.8 0.088 3E-06 35.5 -0.8 52 175-226 15-70 (75)
85 2yql_A PHD finger protein 21A; 86.8 0.065 2.2E-06 34.1 -1.4 47 174-223 5-55 (56)
86 2puy_A PHD finger protein 21A; 85.9 0.049 1.7E-06 35.2 -2.4 49 176-227 3-55 (60)
87 1xwh_A Autoimmune regulator; P 84.0 0.18 6.1E-06 33.2 -0.3 47 175-224 5-55 (66)
88 3v43_A Histone acetyltransfera 83.5 1.9 6.6E-05 31.1 5.1 34 176-209 3-42 (112)
89 3i2d_A E3 SUMO-protein ligase 83.0 0.95 3.3E-05 39.9 3.8 50 178-229 249-302 (371)
90 4fo9_A E3 SUMO-protein ligase 82.1 1.1 3.7E-05 39.4 3.8 50 178-229 215-268 (360)
91 1weo_A Cellulose synthase, cat 80.8 2.6 8.8E-05 29.4 4.6 50 177-226 15-69 (93)
92 2vpb_A Hpygo1, pygopus homolog 79.9 1.3 4.3E-05 29.0 2.7 36 174-209 4-41 (65)
93 3v43_A Histone acetyltransfera 79.1 0.57 1.9E-05 34.0 0.9 46 178-223 61-111 (112)
94 2e6r_A Jumonji/ARID domain-con 78.4 0.22 7.6E-06 35.1 -1.5 50 174-223 12-65 (92)
95 1weu_A Inhibitor of growth fam 77.5 2.3 7.7E-05 29.8 3.6 47 176-226 34-87 (91)
96 2cs3_A Protein C14ORF4, MY039 77.3 5 0.00017 27.4 5.1 40 175-214 12-52 (93)
97 2lv9_A Histone-lysine N-methyl 76.4 0.97 3.3E-05 32.0 1.4 46 177-223 27-75 (98)
98 1wep_A PHF8; structural genomi 76.2 1.9 6.5E-05 29.1 2.9 49 175-224 9-63 (79)
99 2e6s_A E3 ubiquitin-protein li 76.0 0.51 1.7E-05 32.1 -0.2 45 179-223 27-76 (77)
100 1wen_A Inhibitor of growth fam 75.9 1.8 6.3E-05 28.7 2.6 47 176-226 14-67 (71)
101 2yt5_A Metal-response element- 75.0 0.83 2.8E-05 29.6 0.7 51 175-225 3-62 (66)
102 2l43_A N-teminal domain from h 74.1 2.2 7.6E-05 29.5 2.8 54 173-226 20-77 (88)
103 3asl_A E3 ubiquitin-protein li 74.1 0.45 1.5E-05 31.7 -0.8 45 180-224 20-69 (70)
104 1wem_A Death associated transc 73.0 1.4 4.8E-05 29.5 1.5 46 178-224 16-70 (76)
105 2lbm_A Transcriptional regulat 70.1 4.4 0.00015 30.7 3.8 49 173-224 58-117 (142)
106 2ku3_A Bromodomain-containing 69.0 3.8 0.00013 27.2 2.9 51 173-223 11-65 (71)
107 2kgg_A Histone demethylase jar 68.7 1.6 5.4E-05 27.0 0.9 43 180-222 4-52 (52)
108 3o70_A PHD finger protein 13; 68.3 0.79 2.7E-05 30.3 -0.6 50 173-223 14-66 (68)
109 3ask_A E3 ubiquitin-protein li 65.1 1.7 5.9E-05 35.6 0.7 47 178-224 174-225 (226)
110 2kwj_A Zinc finger protein DPF 64.7 4.6 0.00016 29.2 2.9 33 179-211 2-41 (114)
111 2dj7_A Actin-binding LIM prote 64.3 6 0.0002 26.4 3.3 42 175-226 12-53 (80)
112 3ql9_A Transcriptional regulat 64.2 3.4 0.00012 30.8 2.1 49 173-224 52-111 (129)
113 2kwj_A Zinc finger protein DPF 63.7 0.3 1E-05 35.7 -3.8 49 179-227 59-111 (114)
114 2xb1_A Pygopus homolog 2, B-ce 62.7 3.8 0.00013 29.3 2.1 48 178-225 3-62 (105)
115 1z60_A TFIIH basal transcripti 62.6 3.1 0.0001 26.7 1.4 43 179-221 16-58 (59)
116 3shb_A E3 ubiquitin-protein li 62.6 0.71 2.4E-05 31.4 -1.8 44 180-223 28-76 (77)
117 2d8v_A Zinc finger FYVE domain 60.7 6.7 0.00023 25.7 2.7 32 175-210 5-37 (67)
118 1zbd_B Rabphilin-3A; G protein 58.8 3.7 0.00013 30.8 1.5 34 176-209 53-88 (134)
119 1z2q_A LM5-1; membrane protein 58.2 9.1 0.00031 26.0 3.3 39 173-211 16-55 (84)
120 2rsd_A E3 SUMO-protein ligase 57.3 0.98 3.3E-05 29.7 -1.8 46 176-223 8-64 (68)
121 2co8_A NEDD9 interacting prote 56.1 11 0.00037 25.1 3.4 42 175-226 12-53 (82)
122 4gne_A Histone-lysine N-methyl 56.1 6.8 0.00023 28.1 2.5 44 174-223 11-61 (107)
123 3t7l_A Zinc finger FYVE domain 55.7 8.6 0.00029 26.5 2.9 38 175-212 17-55 (90)
124 2yw8_A RUN and FYVE domain-con 54.3 9.1 0.00031 25.8 2.8 38 174-211 15-53 (82)
125 2cu8_A Cysteine-rich protein 2 53.3 6.1 0.00021 25.8 1.7 40 177-226 8-47 (76)
126 1x4u_A Zinc finger, FYVE domai 52.5 11 0.00037 25.6 2.9 38 173-210 9-47 (84)
127 1joc_A EEA1, early endosomal a 51.3 10 0.00036 27.8 2.9 38 174-211 65-103 (125)
128 2vnf_A ING 4, P29ING4, inhibit 50.7 1.5 5.2E-05 28.1 -1.6 43 177-223 9-58 (60)
129 2ysm_A Myeloid/lymphoid or mix 50.4 2.3 7.9E-05 30.5 -0.9 45 180-224 56-104 (111)
130 2jne_A Hypothetical protein YF 50.1 3.6 0.00012 29.1 0.1 42 178-227 32-73 (101)
131 1x62_A C-terminal LIM domain p 50.0 15 0.0005 24.1 3.3 40 176-226 13-52 (79)
132 1vfy_A Phosphatidylinositol-3- 49.1 13 0.00044 24.4 2.8 33 178-210 11-44 (73)
133 2ri7_A Nucleosome-remodeling f 48.9 2.6 8.8E-05 32.7 -0.9 47 176-223 6-58 (174)
134 1wfk_A Zinc finger, FYVE domai 48.1 11 0.00036 26.0 2.3 37 175-211 6-43 (88)
135 1zfo_A LAsp-1; LIM domain, zin 47.6 8.2 0.00028 21.0 1.4 28 178-207 3-30 (31)
136 3mjh_B Early endosome antigen 47.5 4.3 0.00015 23.0 0.2 14 177-190 4-17 (34)
137 3c6w_A P28ING5, inhibitor of g 47.5 1.9 6.6E-05 27.5 -1.5 44 176-223 7-57 (59)
138 2cor_A Pinch protein; LIM doma 47.4 17 0.00057 23.9 3.2 40 176-226 13-52 (79)
139 1iml_A CRIP, cysteine rich int 47.4 4.2 0.00014 26.6 0.1 46 177-226 26-72 (76)
140 2gmg_A Hypothetical protein PF 46.3 4 0.00014 29.3 -0.1 29 194-227 68-96 (105)
141 1x64_A Alpha-actinin-2 associa 45.8 25 0.00084 23.5 4.0 41 176-227 23-63 (89)
142 3fyb_A Protein of unknown func 45.4 9 0.00031 27.1 1.6 11 203-213 42-52 (104)
143 2o35_A Hypothetical protein DU 45.3 9 0.00031 27.2 1.6 11 203-213 43-53 (105)
144 1wev_A Riken cDNA 1110020M19; 45.1 4.1 0.00014 28.1 -0.2 51 176-226 14-74 (88)
145 2pk7_A Uncharacterized protein 44.8 5.4 0.00018 26.3 0.3 18 210-227 3-20 (69)
146 2zet_C Melanophilin; complex, 44.7 11 0.00038 28.8 2.2 33 176-208 66-100 (153)
147 1x61_A Thyroid receptor intera 44.5 19 0.00065 22.9 3.1 11 179-189 6-16 (72)
148 1y02_A CARP2, FYVE-ring finger 44.0 2.7 9.2E-05 31.0 -1.4 46 176-221 17-63 (120)
149 1x4l_A Skeletal muscle LIM-pro 43.8 17 0.00059 23.1 2.8 41 178-226 5-46 (72)
150 1dvp_A HRS, hepatocyte growth 39.9 15 0.0005 29.5 2.3 35 177-211 160-195 (220)
151 1x63_A Skeletal muscle LIM-pro 39.6 17 0.00059 23.8 2.3 41 178-227 15-55 (82)
152 3zyq_A Hepatocyte growth facto 39.5 15 0.00052 29.7 2.3 35 177-211 163-198 (226)
153 2dar_A PDZ and LIM domain prot 39.1 14 0.00048 24.9 1.8 38 178-226 25-62 (90)
154 1g47_A Pinch protein; LIM doma 37.4 27 0.00094 22.4 3.0 43 176-227 9-51 (77)
155 2d8x_A Protein pinch; LIM doma 37.2 15 0.00051 23.3 1.6 38 178-226 5-42 (70)
156 1wew_A DNA-binding family prot 36.4 34 0.0012 22.6 3.4 49 176-225 14-73 (78)
157 2l3k_A Rhombotin-2, linker, LI 35.8 17 0.00058 26.1 1.9 34 178-212 36-69 (123)
158 2jny_A Uncharacterized BCR; st 35.6 5.1 0.00018 26.3 -0.9 18 210-227 5-22 (67)
159 2kpi_A Uncharacterized protein 35.3 3.2 0.00011 26.3 -1.9 13 214-226 9-21 (56)
160 1wee_A PHD finger family prote 35.0 18 0.00062 23.6 1.8 49 175-224 13-66 (72)
161 1wig_A KIAA1808 protein; LIM d 34.8 31 0.0011 22.2 2.9 26 179-207 6-31 (73)
162 1x4k_A Skeletal muscle LIM-pro 34.6 22 0.00076 22.5 2.2 39 179-226 6-44 (72)
163 2a20_A Regulating synaptic mem 34.3 33 0.0011 21.9 2.8 50 174-223 5-59 (62)
164 2jrp_A Putative cytoplasmic pr 34.2 13 0.00045 25.3 1.0 40 179-226 3-42 (81)
165 1x68_A FHL5 protein; four-and- 33.9 18 0.00061 23.4 1.6 41 178-226 5-46 (76)
166 1wd2_A Ariadne-1 protein homol 33.8 11 0.00036 24.0 0.4 38 178-215 6-48 (60)
167 3vhs_A ATPase wrnip1; zinc fin 33.7 9.2 0.00032 20.1 0.1 10 217-226 8-17 (29)
168 2pv0_B DNA (cytosine-5)-methyl 33.3 34 0.0011 30.2 3.7 48 173-223 88-147 (386)
169 3a1b_A DNA (cytosine-5)-methyl 33.2 22 0.00076 27.3 2.2 39 173-214 74-114 (159)
170 2cur_A Skeletal muscle LIM-pro 33.1 20 0.00069 22.6 1.7 38 178-226 5-42 (69)
171 3bbo_3 Ribosomal protein L33; 31.7 20 0.00068 23.4 1.5 18 213-230 47-64 (66)
172 2d8z_A Four and A half LIM dom 31.4 30 0.001 21.7 2.4 11 179-189 6-16 (70)
173 1wyh_A SLIM 2, skeletal muscle 30.7 34 0.0012 21.6 2.6 40 178-226 5-44 (72)
174 1v6g_A Actin binding LIM prote 29.9 25 0.00087 22.9 1.9 37 179-226 16-52 (81)
175 2jvx_A NF-kappa-B essential mo 29.6 11 0.00037 20.3 -0.1 11 216-226 4-14 (28)
176 1m3v_A FLIN4, fusion of the LI 29.5 42 0.0014 23.9 3.1 50 178-227 32-81 (122)
177 2lcq_A Putative toxin VAPC6; P 28.7 13 0.00044 28.3 0.2 26 195-226 134-159 (165)
178 1x6a_A LIMK-2, LIM domain kina 28.2 28 0.00096 22.7 1.9 35 180-225 17-51 (81)
179 2jmo_A Parkin; IBR, E3 ligase, 27.7 4.2 0.00014 27.5 -2.5 19 198-218 55-73 (80)
180 2jr6_A UPF0434 protein NMA0874 27.2 5.2 0.00018 26.3 -2.0 10 217-226 10-19 (68)
181 1nyp_A Pinch protein; LIM doma 26.0 25 0.00087 21.8 1.3 38 178-226 5-42 (66)
182 3mpx_A FYVE, rhogef and PH dom 25.5 15 0.0005 32.3 0.0 50 176-225 373-430 (434)
183 2hf1_A Tetraacyldisaccharide-1 25.2 5.2 0.00018 26.4 -2.3 11 217-227 10-20 (68)
184 1a7i_A QCRP2 (LIM1); LIM domai 25.1 14 0.00049 24.2 -0.1 28 178-207 7-34 (81)
185 2xjy_A Rhombotin-2; oncoprotei 25.0 47 0.0016 23.7 2.8 25 201-225 52-76 (131)
186 2dlo_A Thyroid receptor-intera 24.4 25 0.00085 23.0 1.0 38 178-226 15-52 (81)
187 2cup_A Skeletal muscle LIM-pro 24.2 50 0.0017 22.3 2.7 47 177-227 32-78 (101)
188 2cuq_A Four and A half LIM dom 24.1 42 0.0014 21.6 2.1 37 179-226 16-52 (80)
189 2g6q_A Inhibitor of growth pro 23.3 8.8 0.0003 24.6 -1.4 44 177-224 10-60 (62)
190 2js4_A UPF0434 protein BB2007; 22.9 5.9 0.0002 26.2 -2.4 12 177-188 7-18 (70)
191 2d8y_A Eplin protein; LIM doma 22.8 83 0.0028 20.8 3.5 11 179-189 16-26 (91)
192 2zjr_1 50S ribosomal protein L 22.5 13 0.00046 23.3 -0.6 18 213-230 36-53 (55)
193 2ehe_A Four and A half LIM dom 22.4 45 0.0015 21.6 2.0 39 179-226 16-54 (82)
194 6rxn_A Rubredoxin; electron tr 21.5 15 0.00053 22.1 -0.5 8 217-224 32-39 (46)
195 2egq_A FHL1 protein; LIM domai 21.3 39 0.0013 21.6 1.5 40 178-226 15-57 (77)
196 2ftc_P Mitochondrial ribosomal 21.2 15 0.00053 22.7 -0.5 19 212-230 33-51 (52)
197 3f6q_B LIM and senescent cell 21.1 45 0.0015 20.7 1.8 42 177-227 10-51 (72)
198 1b8t_A Protein (CRP1); LIM dom 20.7 43 0.0015 25.9 1.9 44 177-224 141-184 (192)
199 1x3h_A Leupaxin; paxillin fami 20.2 40 0.0014 21.7 1.4 37 179-226 16-52 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-17 Score=118.08 Aligned_cols=75 Identities=27% Similarity=0.538 Sum_probs=60.1
Q ss_pred cccchHHHhhhhchhccCCCCCCCCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 150 KLVDSESSDKALATKAAYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 150 k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
.+..++.+..|+...+.. .....+++..|+||++.|..++..+.++|+|.||..||.+||+.+.+||+||+.+..
T Consensus 15 ~~~s~~~i~~lp~~~~~~---~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 15 PPASKESIDALPEILVTE---DHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCHHHHHTSCEEECCT---TCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCHHHHHhCCCeeecc---cccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345556777777665511 113446678999999999988888899999999999999999999999999998753
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=5.4e-17 Score=105.97 Aligned_cols=52 Identities=29% Similarity=0.705 Sum_probs=47.3
Q ss_pred CCCCccccccCccCCCCCceecC-CCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTR-CSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
+++..|+||++.|..++..+.++ |+|.||..||.+|++++.+||+||+++.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 56789999999999888788887 99999999999999999999999998753
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=107.97 Aligned_cols=56 Identities=30% Similarity=0.690 Sum_probs=49.9
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
...+.+..|+||++.|..+..++.++|+|.||..||.+|++++.+||+||+.+...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 44566789999999998877888999999999999999999999999999998754
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.6e-17 Score=113.22 Aligned_cols=55 Identities=24% Similarity=0.735 Sum_probs=49.2
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
...++..|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+++...
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456789999999999888888999999999999999999999999999988653
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=2.8e-16 Score=109.94 Aligned_cols=57 Identities=32% Similarity=0.742 Sum_probs=50.5
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
....+...|+||++.|......+.++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 445667899999999998777888999999999999999999999999999987654
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-16 Score=108.58 Aligned_cols=55 Identities=27% Similarity=0.782 Sum_probs=49.0
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
....++..|+||++.|......++++|+|.||..||.+|++.+.+||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3456678999999999988888888999999999999999999999999998753
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6e-16 Score=109.43 Aligned_cols=53 Identities=25% Similarity=0.670 Sum_probs=43.2
Q ss_pred CCCCccccccCccCC-----------CCCc-eecCCCCccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 176 EDEDVCPTCLDEYTP-----------ENPK-ITTRCSHHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 176 ~~~~~C~ICle~~~~-----------~~~~-~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
.+++.|+||++.|.. ++.+ ++++|+|.||..||.+||+++.+||+||+++.+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 456778888888854 3334 4456999999999999999999999999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.58 E-value=1.1e-15 Score=99.52 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=44.9
Q ss_pred CCCCccccccCccCC-CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 176 EDEDVCPTCLDEYTP-ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 176 ~~~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
.++..|+||++.|.. ++..++++|+|.||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457889999999965 346788999999999999999999999999999874
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.55 E-value=2.4e-15 Score=111.73 Aligned_cols=54 Identities=30% Similarity=0.625 Sum_probs=46.2
Q ss_pred CCCCccccccCccCCC---------------CCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 176 EDEDVCPTCLDEYTPE---------------NPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~---------------~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
.+++.|+||++.|... ..+++++|+|.||..||.+||+++.+||+||+++.++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 103 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceeec
Confidence 3578899999999853 23677899999999999999999999999999987653
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.6e-15 Score=101.38 Aligned_cols=55 Identities=27% Similarity=0.722 Sum_probs=46.7
Q ss_pred CCCCCCCccccccCccCC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 173 TSTEDEDVCPTCLDEYTP----ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
....+...|+||++.|.. +...++++|||.||..||.+|++.+.+||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 344667899999999975 2334789999999999999999999999999998864
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=1.8e-15 Score=103.69 Aligned_cols=56 Identities=27% Similarity=0.702 Sum_probs=47.9
Q ss_pred CCCCCCccccccCccCC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 174 STEDEDVCPTCLDEYTP----ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
..+++..|+||++.|.. +...+.++|||.||..||.+|++++.+||+||+.+..++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 34567899999999875 244588999999999999999999999999999987654
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=99.83 Aligned_cols=55 Identities=22% Similarity=0.442 Sum_probs=46.6
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
...++...|+||++.|.+ ++.+++|||.||..||.+|++.+..||+||+.+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 10 SELTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hhcCCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 445667899999999986 4444599999999999999999999999999987654
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=102.47 Aligned_cols=56 Identities=29% Similarity=0.715 Sum_probs=47.3
Q ss_pred CCCCCCCccccccCccCCCCCceecCCC-----CccCHHHHHHHHhcCC--CCCccCCCCcCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCS-----HHFHLGCIYEWLERSE--SCPICGKEMEFCE 229 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~-----H~Fh~~CI~~Wl~~s~--~CPvCr~~~~~~~ 229 (231)
....+++.|.||+++|..++.+ ++||+ |.||..||.+||..++ +||+||..+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4455678999999999877766 58996 9999999999998764 8999999987754
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.2e-14 Score=108.84 Aligned_cols=52 Identities=29% Similarity=0.584 Sum_probs=42.4
Q ss_pred CCCccccccCccCCCC---------------CceecCCCCccCHHHHHHHH-----hcCCCCCccCCCCcCc
Q 046929 177 DEDVCPTCLDEYTPEN---------------PKITTRCSHHFHLGCIYEWL-----ERSESCPICGKEMEFC 228 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~---------------~~~~l~C~H~Fh~~CI~~Wl-----~~s~~CPvCr~~~~~~ 228 (231)
.++.|+|||+.|.... ..++++|+|.||..||.+|| +.+.+||+||+.+..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999996532 33478999999999999999 4567999999987654
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1e-14 Score=100.18 Aligned_cols=51 Identities=20% Similarity=0.448 Sum_probs=45.3
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
...+...|+||++.+.. .+.++|+|.||..||.+|++....||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34567899999999976 6788999999999999999999999999998764
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=5.6e-15 Score=98.96 Aligned_cols=53 Identities=28% Similarity=0.727 Sum_probs=45.6
Q ss_pred CCCccccccCccCC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 177 DEDVCPTCLDEYTP----ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 177 ~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
++..|+||++.+.. +...+.++|||.||..||.+|++++.+||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 46789999999975 234588999999999999999999999999999987653
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.50 E-value=1.3e-14 Score=98.53 Aligned_cols=50 Identities=28% Similarity=0.778 Sum_probs=44.2
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
+.+..|+||++.+.. +.+.++|||.||..||.+|++++.+||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 457789999999874 45889999999999999999999999999998753
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.8e-14 Score=100.92 Aligned_cols=56 Identities=25% Similarity=0.584 Sum_probs=48.0
Q ss_pred CCCCCCCccccccCccCCCCC-ceecCCCCccCHHHHHHHHhcC---CCCCccCCCCcCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENP-KITTRCSHHFHLGCIYEWLERS---ESCPICGKEMEFC 228 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl~~s---~~CPvCr~~~~~~ 228 (231)
....+...|+||++.|..++. .++++|||.||..||.+|++.+ ..||+||+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 455677899999999987653 7788999999999999999876 7999999987654
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.48 E-value=4.7e-14 Score=97.74 Aligned_cols=54 Identities=26% Similarity=0.487 Sum_probs=45.5
Q ss_pred CCCCCCCccccccCccCCCCCceecC-CCCccCHHHHHHHHhcC--CCCCccCCCCcCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTR-CSHHFHLGCIYEWLERS--ESCPICGKEMEFCE 229 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~s--~~CPvCr~~~~~~~ 229 (231)
....++..|+||++.|.+ .++++ |||.||..||..|++.+ ..||+||+++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CCSCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred ccCCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 445677899999999986 66788 99999999999999866 69999999865443
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=99.29 Aligned_cols=52 Identities=33% Similarity=0.779 Sum_probs=45.8
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
...+...|+||++.+.. +.++|+|.||..||.+|++++.+||+||+.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 44567899999999875 78999999999999999999999999999887554
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.7e-14 Score=97.07 Aligned_cols=54 Identities=31% Similarity=0.675 Sum_probs=46.1
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHh---cCCCCCccCCCCcCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLE---RSESCPICGKEMEFCE 229 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---~s~~CPvCr~~~~~~~ 229 (231)
...++...|+||++.|.. .+.++|||.||..||..|++ ....||+||+.+..++
T Consensus 15 ~~~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345667899999999986 67789999999999999997 4568999999987764
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.2e-14 Score=95.23 Aligned_cols=53 Identities=25% Similarity=0.492 Sum_probs=44.9
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHH-hcCCCCCccCCCCcCcC
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWL-ERSESCPICGKEMEFCE 229 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl-~~s~~CPvCr~~~~~~~ 229 (231)
...+...|+||++.+.. .+.++|||.||..||.+|+ .....||+||+.+..++
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34567899999999986 5558999999999999999 45679999999987664
No 23
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.46 E-value=6.1e-15 Score=111.18 Aligned_cols=53 Identities=30% Similarity=0.654 Sum_probs=1.2
Q ss_pred CCCccccccCccCCC---------------CCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 177 DEDVCPTCLDEYTPE---------------NPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 177 ~~~~C~ICle~~~~~---------------~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
+++.|+||++.|... ..++.++|+|.||..||.+||+++.+||+||+++.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeec
Confidence 468999999999752 13445689999999999999999999999999987653
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.9e-14 Score=98.79 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=44.8
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...+....|+||++.|.. .++++|||.||..||.+|++....||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344557789999999976 677999999999999999999999999999875
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=2.4e-13 Score=95.83 Aligned_cols=53 Identities=28% Similarity=0.680 Sum_probs=45.5
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc------CCCCCccCCCCcCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER------SESCPICGKEMEFC 228 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~------s~~CPvCr~~~~~~ 228 (231)
....+...|+||++.|.. .++++|+|.||..||..|++. ...||+||+.+..+
T Consensus 14 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCCCTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred HhCccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 344567899999999986 567899999999999999987 67999999998754
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.41 E-value=4.9e-14 Score=109.21 Aligned_cols=49 Identities=37% Similarity=0.859 Sum_probs=43.8
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
+++..|+||++.|.. +++++|||.||..||..|+.++.+||+||+++..
T Consensus 51 ~~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 345689999999986 7789999999999999999999999999998754
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.8e-13 Score=95.51 Aligned_cols=51 Identities=16% Similarity=0.411 Sum_probs=45.0
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCcCc
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-SESCPICGKEMEFC 228 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-s~~CPvCr~~~~~~ 228 (231)
..++..|+||++.|.+ .++++|||.||..||.+|++. +.+||+||+.+...
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4568899999999986 677899999999999999987 78999999988654
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=95.13 Aligned_cols=54 Identities=26% Similarity=0.654 Sum_probs=45.9
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc------CCCCCccCCCCcCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER------SESCPICGKEMEFCE 229 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~------s~~CPvCr~~~~~~~ 229 (231)
....+...|+||++.|.. .+.++|||.||..||..|++. ...||+||+.+...+
T Consensus 14 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HHccCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 344567899999999976 566899999999999999987 789999999987543
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5e-13 Score=89.43 Aligned_cols=46 Identities=37% Similarity=0.820 Sum_probs=39.7
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHh---cCCCCCcc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLE---RSESCPIC 221 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---~s~~CPvC 221 (231)
...+++..|+||++.|.+ .++++|||.||..||.+|++ ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445678899999999986 67789999999999999998 45689998
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.39 E-value=9e-14 Score=97.04 Aligned_cols=53 Identities=30% Similarity=0.701 Sum_probs=45.1
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc-------CCCCCccCCCCcCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-------SESCPICGKEMEFC 228 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-------s~~CPvCr~~~~~~ 228 (231)
...+++..|+||++.|.. .+.++|||.||..||.+|++. ...||+||+.+...
T Consensus 7 ~~~~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred hhcccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 345668899999999986 566899999999999999987 67899999998654
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=100.99 Aligned_cols=50 Identities=22% Similarity=0.612 Sum_probs=43.6
Q ss_pred CCCCccccccCccCCCCCcee-cCCCCccCHHHHHHHHhcC-CCCCccCCCCcCc
Q 046929 176 EDEDVCPTCLDEYTPENPKIT-TRCSHHFHLGCIYEWLERS-ESCPICGKEMEFC 228 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~-l~C~H~Fh~~CI~~Wl~~s-~~CPvCr~~~~~~ 228 (231)
.++..|+||++.|.. .+. ++|||.||..||.+|++.+ ..||+||+.+..+
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 446789999999986 555 9999999999999999888 6999999998654
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=92.50 Aligned_cols=55 Identities=18% Similarity=0.483 Sum_probs=46.3
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC--CCCCccCCCCcCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS--ESCPICGKEMEFCE 229 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s--~~CPvCr~~~~~~~ 229 (231)
...+..+.|+||++.+..+. ....|+|.||..||.+||+++ .+||+||+++.++.
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred hccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 34466789999999998643 344899999999999999887 89999999998764
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.36 E-value=7e-13 Score=95.32 Aligned_cols=51 Identities=27% Similarity=0.536 Sum_probs=43.8
Q ss_pred CCCCCCCccccccCccCCCCCceecC-CCCccCHHHHHHHHhcC--CCCCccCCCCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTR-CSHHFHLGCIYEWLERS--ESCPICGKEME 226 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~s--~~CPvCr~~~~ 226 (231)
....++..|+||++.|.+ .++++ |||.||..||..|+..+ ..||+||+.+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 455678899999999986 67788 99999999999999754 59999999873
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.8e-13 Score=86.49 Aligned_cols=46 Identities=33% Similarity=0.862 Sum_probs=38.8
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHH---hcCCCCCcc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWL---ERSESCPIC 221 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl---~~s~~CPvC 221 (231)
....+...|+||++.+.. .++++|||.||..||.+|+ ++...||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 344567899999999986 5678999999999999995 456799998
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=7.5e-13 Score=89.17 Aligned_cols=53 Identities=25% Similarity=0.661 Sum_probs=42.1
Q ss_pred CCCccccccC-ccCCCC-CceecCCCCccCHHHHHHHHhc-CCCCCccCCCCcCcC
Q 046929 177 DEDVCPTCLD-EYTPEN-PKITTRCSHHFHLGCIYEWLER-SESCPICGKEMEFCE 229 (231)
Q Consensus 177 ~~~~C~ICle-~~~~~~-~~~~l~C~H~Fh~~CI~~Wl~~-s~~CPvCr~~~~~~~ 229 (231)
++..|+||++ .|.... ..++++|||.||..||.+|+.+ ...||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 4678999999 776533 2256899999999999999764 468999999987543
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.32 E-value=4.8e-13 Score=97.59 Aligned_cols=49 Identities=27% Similarity=0.604 Sum_probs=42.2
Q ss_pred CCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
+...|+||++.|.. ++.+++|||.||..||..|++.+..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46689999999986 33344899999999999999999999999998864
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.32 E-value=4.3e-13 Score=102.16 Aligned_cols=53 Identities=28% Similarity=0.740 Sum_probs=45.7
Q ss_pred CCCCccccccCccCC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 176 EDEDVCPTCLDEYTP----ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 176 ~~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
.++..|+||++.|.. +...+.++|||.||..||.+||+.+.+||+||+.+..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 456789999999975 23448899999999999999999999999999988654
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.31 E-value=1e-12 Score=97.44 Aligned_cols=50 Identities=28% Similarity=0.619 Sum_probs=43.3
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
.++..|+||++.|.. ++.+++|||.||..||..|++.+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 557889999999986 34444999999999999999999999999998765
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=99.17 Aligned_cols=49 Identities=27% Similarity=0.514 Sum_probs=42.8
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCC-CCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE-SCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~-~CPvCr~~~~~ 227 (231)
++...|+||++.|.. .+.++|||.||..||..|+.... .||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456789999999986 77789999999999999998554 99999998865
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=3.3e-12 Score=94.82 Aligned_cols=48 Identities=27% Similarity=0.713 Sum_probs=41.6
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCC---CCCccCCCCcCc
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE---SCPICGKEMEFC 228 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~---~CPvCr~~~~~~ 228 (231)
...|+||++.|.. .+.++|||.||..||..|+..+. .||+||+.+...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 5689999999975 56689999999999999998764 899999988654
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.25 E-value=1.7e-12 Score=98.79 Aligned_cols=55 Identities=27% Similarity=0.709 Sum_probs=46.8
Q ss_pred CCCCCccccccCccCC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 175 TEDEDVCPTCLDEYTP----ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
.++...|+||++.|.. +...+.++|||.||..||.+||+.+++||+||+.+..++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3567789999999875 234478999999999999999999999999999987653
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=2.2e-12 Score=97.13 Aligned_cols=53 Identities=25% Similarity=0.536 Sum_probs=45.5
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCC-CCCccCCCCcCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE-SCPICGKEMEFC 228 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~-~CPvCr~~~~~~ 228 (231)
...++...|+||++.+.. .+.++|||.||..||.+|++.+. +||+||+.+..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 13 PPLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp SCCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 345667899999999986 67789999999999999998765 999999988654
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=8.8e-12 Score=88.67 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=46.5
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
...++..|+||++.|.+ .++++|||.|+..||.+|+....+||+||+.+...
T Consensus 10 ~~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TCCTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCchheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 34568899999999997 88899999999999999999889999999988654
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.22 E-value=2.7e-12 Score=102.13 Aligned_cols=50 Identities=34% Similarity=0.725 Sum_probs=42.5
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-SESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-s~~CPvCr~~~~~ 227 (231)
.+...|+||++.|.. ++.+++|||.||..||..|++. +..||+||+.+..
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456789999999986 4444599999999999999987 7789999998853
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.22 E-value=1.4e-12 Score=97.74 Aligned_cols=50 Identities=24% Similarity=0.601 Sum_probs=43.5
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-SESCPICGKEME 226 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-s~~CPvCr~~~~ 226 (231)
...++..|+||++.|.. .+.++|||.||..||..|++. ...||+||+.+.
T Consensus 11 ~~~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 11 PSLSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCHHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 44567899999999986 677899999999999999976 678999999875
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=2.9e-12 Score=83.98 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=41.8
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
..+...|+||++.|.. .++++|||.||..||..| ...||+||+.+....
T Consensus 3 e~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp SCCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 3567789999999986 678999999999999884 678999999987654
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.20 E-value=4.5e-12 Score=95.03 Aligned_cols=50 Identities=24% Similarity=0.423 Sum_probs=43.5
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCcCc
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-SESCPICGKEMEFC 228 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-s~~CPvCr~~~~~~ 228 (231)
.++..|+||++.+.+ .+.++|||.||..||..|++. ..+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 21 VKSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 346789999999986 677899999999999999987 67999999988654
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.20 E-value=8.8e-12 Score=97.93 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=43.5
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCC-CCCccCCCCcCc
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE-SCPICGKEMEFC 228 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~-~CPvCr~~~~~~ 228 (231)
.+...|+||++.|.. .++++|||.||..||..|++... .||+||+.+...
T Consensus 76 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346789999999986 77799999999999999998765 899999998754
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.20 E-value=8.6e-12 Score=83.99 Aligned_cols=48 Identities=17% Similarity=0.479 Sum_probs=42.0
Q ss_pred CCCCccccccCccCCCCCceec--CCCCc-cCHHHHHHHHhcCCCCCccCCCCc
Q 046929 176 EDEDVCPTCLDEYTPENPKITT--RCSHH-FHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l--~C~H~-Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
.++..|.||++.+.+ .+.+ ||||. |+..|+..|++.+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456789999999876 5555 99999 899999999999999999999875
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.18 E-value=2.2e-11 Score=88.94 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=46.5
Q ss_pred CCCCCCccccccCccCCCCCceecCCC-CccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCS-HHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
...++..|+||++.|.+ +++++|| |.|+..||.+||....+||+||+++...
T Consensus 18 ~~p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp SCCTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cCcHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 34567899999999997 8889999 9999999999999889999999998754
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=2.7e-11 Score=84.77 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=42.3
Q ss_pred CCCCCCccccccCccCCCCCceec--CCCCccCHHHHHHHHh-cCCCCCccCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITT--RCSHHFHLGCIYEWLE-RSESCPICGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl~-~s~~CPvCr~~~~~~ 228 (231)
..+++..|+||++.+...+. +.+ +|||.||..||..|++ ....||+||+.+...
T Consensus 7 ~~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 34677899999999865333 334 4999999999999984 457899999987654
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.17 E-value=1.6e-11 Score=90.00 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=46.5
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
...+...|+||++.|.+ +++++|||.|+..||..||....+||+||+++...
T Consensus 25 ~~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp SCSTTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cCcHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 34568899999999997 88899999999999999999889999999988754
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.15 E-value=7.1e-12 Score=97.47 Aligned_cols=50 Identities=20% Similarity=0.523 Sum_probs=43.3
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCC-CCCccCCCCcC
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE-SCPICGKEMEF 227 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~-~CPvCr~~~~~ 227 (231)
.++...|+||++.+.. .+.++|||.||..||.+|++... .||+||+++.+
T Consensus 28 l~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4567899999999986 57789999999999999998665 89999997644
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.14 E-value=2e-11 Score=81.92 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=41.9
Q ss_pred CCCCCccccccCccCCCCCceec--CCCCc-cCHHHHHHHHhcCCCCCccCCCCc
Q 046929 175 TEDEDVCPTCLDEYTPENPKITT--RCSHH-FHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l--~C~H~-Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
.+....|.||++...+ .+++ ||||. ||..|+..|.+++..||+||+++.
T Consensus 4 ~~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3456789999998765 4455 99998 999999999998899999999874
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.7e-11 Score=92.09 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=41.3
Q ss_pred CCCCccccccCccCCCCCceec-CCCCccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 176 EDEDVCPTCLDEYTPENPKITT-RCSHHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l-~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
.+...|+||++.|.. .+.+ +|||.||..||..|+. ..||+||+.+...
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 346789999999986 5566 9999999999999998 7899999988654
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.06 E-value=9.5e-11 Score=104.66 Aligned_cols=47 Identities=23% Similarity=0.647 Sum_probs=42.4
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHh-cCCCCCccCCCCcC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLE-RSESCPICGKEMEF 227 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~-~s~~CPvCr~~~~~ 227 (231)
...|+||++.+.. ++.++|||.||..||..|++ .+.+||+||+.+..
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4689999999976 78899999999999999998 78899999998754
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.06 E-value=3.2e-11 Score=83.45 Aligned_cols=44 Identities=25% Similarity=0.673 Sum_probs=39.0
Q ss_pred CCCccccccCccCCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHH-FHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
++..|+||++.+.+ .+.++|||. ||..||..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999999886 788999999 999999999 899999998753
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=84.55 Aligned_cols=50 Identities=20% Similarity=0.521 Sum_probs=41.6
Q ss_pred CCCCCccccccCccCCCCCceecC-CCCccCHHHHHHHHhcC------CCCCc--cCCC-CcC
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTR-CSHHFHLGCIYEWLERS------ESCPI--CGKE-MEF 227 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~s------~~CPv--Cr~~-~~~ 227 (231)
..++..|+||++.|.+ +++++ |||.|+..||.+||... .+||+ |++. +..
T Consensus 4 ~~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CSSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CCcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 3567899999999997 77775 99999999999999764 49999 9866 543
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=92.71 Aligned_cols=52 Identities=25% Similarity=0.554 Sum_probs=44.8
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC-CCCCccCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS-ESCPICGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s-~~CPvCr~~~~~~ 228 (231)
..++...|+||++.|.. .+.++|||.||..||.+|++.+ .+||+||+.+..+
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45667899999999986 6778999999999999999765 4999999988654
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.97 E-value=1.4e-10 Score=101.28 Aligned_cols=55 Identities=20% Similarity=0.530 Sum_probs=43.1
Q ss_pred CCCCCCccccccCccCCCCCc-----eecCCCCccCHHHHHHHHhcC-----------CCCCccCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPK-----ITTRCSHHFHLGCIYEWLERS-----------ESCPICGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~-----~~l~C~H~Fh~~CI~~Wl~~s-----------~~CPvCr~~~~~~ 228 (231)
..+...+|+||++.+..+..+ ..++|+|.||..||++||++. ++||+||++|..+
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 345678999999999873322 135899999999999999753 4799999988654
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=5.5e-10 Score=95.01 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=45.3
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC-CCCCccCCCCcCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS-ESCPICGKEMEFC 228 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s-~~CPvCr~~~~~~ 228 (231)
....+...|+||++.|.+ +++++|||.||..||..|+..+ .+||+||.++...
T Consensus 203 ~~~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCCCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCCCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 344568899999999997 8889999999999999999864 4599999998654
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.94 E-value=6.4e-10 Score=73.83 Aligned_cols=51 Identities=31% Similarity=0.678 Sum_probs=40.2
Q ss_pred CCCCCccccccCccCCCCCceecCCC--C---ccCHHHHHHHHhc--CCCCCccCCCCcCc
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCS--H---HFHLGCIYEWLER--SESCPICGKEMEFC 228 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~--H---~Fh~~CI~~Wl~~--s~~CPvCr~~~~~~ 228 (231)
.++...|.||+++.. +.+ ++||. | .||..||.+|+.. +.+||+|+.++.++
T Consensus 3 ~~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR 60 (60)
T ss_dssp TCSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred CCCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeecC
Confidence 356789999999843 344 68865 4 9999999999964 57899999988763
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=74.17 Aligned_cols=48 Identities=23% Similarity=0.545 Sum_probs=40.2
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHH-FHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
...++...|.||++...+ .+++||||. ||..|+.. ...||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567889999998876 889999999 99999983 5799999998753
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=8.5e-10 Score=76.28 Aligned_cols=43 Identities=26% Similarity=0.680 Sum_probs=36.9
Q ss_pred CCccccccCccCCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHH-FHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
+..|+||++.+.+ .+.++|||. ||..|+.. ...||+||+++..
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 5579999999876 778999999 99999954 4799999998754
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.83 E-value=1.9e-09 Score=86.80 Aligned_cols=53 Identities=13% Similarity=0.032 Sum_probs=45.5
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC-CCCCccCCCCcCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS-ESCPICGKEMEFC 228 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s-~~CPvCr~~~~~~ 228 (231)
....+...|+||++.|.+ +++++|||.|+..||..|+... .+||+||.++...
T Consensus 101 ~~ip~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 101 REIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCcHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 344678899999999997 7888999999999999999864 4699999988654
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.80 E-value=9.1e-10 Score=77.10 Aligned_cols=43 Identities=26% Similarity=0.648 Sum_probs=37.6
Q ss_pred CCCccccccCccCCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCc
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHH-FHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
++..|+||++.+.+ .+.+||||. ||..|+..| ..||+||+.+.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 35689999999886 888999999 999999887 39999999875
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.78 E-value=2.4e-09 Score=71.24 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=42.8
Q ss_pred CCccccccCccCCCCCceec-CCCCccCHHHHHHHHhcCCCCCccCCCCcCcC
Q 046929 178 EDVCPTCLDEYTPENPKITT-RCSHHFHLGCIYEWLERSESCPICGKEMEFCE 229 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l-~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~~ 229 (231)
...|+|+++.+.+ .+++ ++||.|.+.||.+||+++.+||+.++++..++
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 4689999999996 5666 89999999999999998889999999987654
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=4e-09 Score=75.93 Aligned_cols=49 Identities=31% Similarity=0.629 Sum_probs=39.0
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC--------CCCCc--cCCC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS--------ESCPI--CGKE 224 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s--------~~CPv--Cr~~ 224 (231)
.+..+|+||++++...+...+++|||.||..||..+++.+ -.||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3467899999998864444445899999999999998632 37999 9987
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.71 E-value=4.8e-09 Score=88.77 Aligned_cols=53 Identities=26% Similarity=0.597 Sum_probs=43.4
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC--CCCCc--cCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS--ESCPI--CGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s--~~CPv--Cr~~~~~~ 228 (231)
....+..|+||++.|.+ +++.+.|||.|+..||..|++.+ ..||+ |++.+...
T Consensus 177 ~~~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 177 GGKIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SSBCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CCceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 34567899999999986 44456999999999999999764 47999 99977653
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.58 E-value=9.7e-09 Score=90.77 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=39.6
Q ss_pred CCCCccccccCccCCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHH-FHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
+++..|+||++.+.. .+.+||||. ||..||..| ..||+||+.+..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356789999999986 888899999 999999988 789999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.31 E-value=2.9e-07 Score=66.38 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=38.1
Q ss_pred ccccccCccCCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCcC
Q 046929 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-SESCPICGKEMEF 227 (231)
Q Consensus 180 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-s~~CPvCr~~~~~ 227 (231)
-|.+|--.+.. ..+++||+|+||.+|+..|.++ .++||.|+.++..
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47778777664 5788999999999999999854 5899999998754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.01 E-value=2.9e-06 Score=71.17 Aligned_cols=50 Identities=18% Similarity=0.535 Sum_probs=41.6
Q ss_pred CCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCC--CCCccCCCCcCc
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE--SCPICGKEMEFC 228 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~--~CPvCr~~~~~~ 228 (231)
....|.||.+....| .+...|+|.||..|+.+|++.+. .||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 478899999998874 33445999999999999997654 999999988764
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.71 E-value=0.00068 Score=48.04 Aligned_cols=51 Identities=25% Similarity=0.520 Sum_probs=41.4
Q ss_pred CCCCCCCccccccCccCCCCCceecCCC-CccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCS-HHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
...-+-.-|..|+-... .++.|. |.+|+.|+..-|.+++.||+|++++..+
T Consensus 23 ~s~~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCSCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccccCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 34456778999987654 355675 9999999999999999999999988765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.77 E-value=0.0051 Score=43.96 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=27.2
Q ss_pred CCCccccccCccCCCCCceecCCCCccCHHHHHH-HH
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYE-WL 212 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~-Wl 212 (231)
++..|.||++.|...-....+.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 3578999998754323334499999999999998 53
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.80 E-value=0.028 Score=37.28 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=35.7
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCC----CCCccCCCC
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSE----SCPICGKEM 225 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~----~CPvCr~~~ 225 (231)
......|.||.+. ++.+..-.|...||..|+...|.... .||.|+...
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3456789999854 44455566899999999998886543 799997654
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.56 E-value=0.15 Score=35.33 Aligned_cols=35 Identities=26% Similarity=0.667 Sum_probs=24.6
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHH
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEW 211 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~W 211 (231)
..++.|.|| +.|..+...-.=-|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 467899999 44554333323337899999999985
No 77
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.01 E-value=0.14 Score=35.85 Aligned_cols=54 Identities=24% Similarity=0.537 Sum_probs=38.4
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCCCcCcC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGKEMEFCE 229 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~~~~~~~ 229 (231)
...+.++.|.||... ++.+..-.|.-.||..|+..=|... -.||.|+..-..++
T Consensus 20 ~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke 77 (88)
T 1fp0_A 20 TLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 77 (88)
T ss_dssp SSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCC
T ss_pred ccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccch
Confidence 445667899999875 3445555688899999997755432 27999987655554
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.40 E-value=0.085 Score=38.35 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHh
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLE 213 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~ 213 (231)
...++.|.||.+.-+.++-+.-..|...||..||..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 456889999988744333355567999999999987764
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.90 E-value=0.13 Score=33.29 Aligned_cols=48 Identities=29% Similarity=0.696 Sum_probs=34.1
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCC
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGKE 224 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~~ 224 (231)
....+..|.||.+. ++.+..-.|.-.||..|+..-|... =.||.|++.
T Consensus 7 ~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 44567889999874 3334445688899999998755432 379999754
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.04 E-value=0.21 Score=30.93 Aligned_cols=44 Identities=25% Similarity=0.562 Sum_probs=30.7
Q ss_pred ccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCC
Q 046929 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGK 223 (231)
Q Consensus 180 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~ 223 (231)
.|.||...-..++-+..-.|...||..|+..=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998765444455556788999999997544332 26999975
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.86 E-value=0.13 Score=33.31 Aligned_cols=48 Identities=21% Similarity=0.484 Sum_probs=33.8
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCCC
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGKEM 225 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~~~ 225 (231)
...+..|.||.+. ++.+..-.|...||..|+..-|... =.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4557789999863 3345555688999999998655432 2699997654
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.74 E-value=0.08 Score=34.52 Aligned_cols=50 Identities=20% Similarity=0.496 Sum_probs=34.7
Q ss_pred CCCCCccccccCccCCCCCc-eecCCCCccCHHHHHHHHh-----cCCCCCccCCC
Q 046929 175 TEDEDVCPTCLDEYTPENPK-ITTRCSHHFHLGCIYEWLE-----RSESCPICGKE 224 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~Wl~-----~s~~CPvCr~~ 224 (231)
.++...|+||...+..+... ..-.|..-||..|+..-.. ..-.||.|+.+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45677899999988643333 3345888999999864322 34579999764
No 83
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=87.47 E-value=0.37 Score=47.45 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCCCCCccccccCccCCCCCceecCCC-CccCHHHHHHHHhcCCCCCccCCCCcCc
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCS-HHFHLGCIYEWLERSESCPICGKEMEFC 228 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~s~~CPvCr~~~~~~ 228 (231)
..-++..|||=++-+.+ +++++-| +.|-+..|.+||..+.+||+=|+++...
T Consensus 887 ~iP~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CSCGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 34567889999999998 8889987 5899999999999999999999888654
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.78 E-value=0.088 Score=35.48 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=34.8
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc----CCCCCccCCCCc
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER----SESCPICGKEME 226 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----s~~CPvCr~~~~ 226 (231)
..+...|.||......+.-+..-.|.--||..|+..-+.. .-.||.|+..+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3455679999887643223334458889999999765432 347999976543
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.78 E-value=0.065 Score=34.14 Aligned_cols=47 Identities=30% Similarity=0.633 Sum_probs=33.1
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCC
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGK 223 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~ 223 (231)
....++.|.||... ++.+..-.|...||..|+..-|... -.||.|.+
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34567889999875 3445556688999999998655432 25888854
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=85.86 E-value=0.049 Score=35.19 Aligned_cols=49 Identities=29% Similarity=0.569 Sum_probs=34.1
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~~~~~ 227 (231)
..++.|.||... ++-+..-.|.-.||..|+..-|... -.||.|...+..
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 357789999874 4445556688999999998654332 269999665433
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=84.00 E-value=0.18 Score=33.18 Aligned_cols=47 Identities=28% Similarity=0.576 Sum_probs=33.3
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCC
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGKE 224 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~~ 224 (231)
...++.|.||.+. ++.+..-.|.-.||..|+..-|... =.||.|...
T Consensus 5 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4567899999874 3445555688999999998544332 269999653
No 88
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.48 E-value=1.9 Score=31.11 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=24.8
Q ss_pred CCCCccccccCcc------CCCCCceecCCCCccCHHHHH
Q 046929 176 EDEDVCPTCLDEY------TPENPKITTRCSHHFHLGCIY 209 (231)
Q Consensus 176 ~~~~~C~ICle~~------~~~~~~~~l~C~H~Fh~~CI~ 209 (231)
+....|.+|+..- ..++-+.-..|+..||..||.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3567899998763 223445566799999999995
No 89
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=83.00 E-value=0.95 Score=39.86 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=35.5
Q ss_pred CCccccccCccCCCCCceecCCCCc--cCHHHHHHHHhcC--CCCCccCCCCcCcC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHH--FHLGCIYEWLERS--ESCPICGKEMEFCE 229 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~--Fh~~CI~~Wl~~s--~~CPvCr~~~~~~~ 229 (231)
...|||=+..+.. +.+-..|.|. |-+.=+....++. -.||+|.+.+.+.+
T Consensus 249 SL~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred eecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 4678887777765 7788889998 5555555544443 37999999876543
No 90
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.12 E-value=1.1 Score=39.36 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=36.7
Q ss_pred CCccccccCccCCCCCceecCCCCc--cCHHHHHHHHhcC--CCCCccCCCCcCcC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHH--FHLGCIYEWLERS--ESCPICGKEMEFCE 229 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~--Fh~~CI~~Wl~~s--~~CPvCr~~~~~~~ 229 (231)
...|+|=+..+.. +.+-..|.|. |-+.=+....++. -.||+|.+.+.+.+
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 4679988777765 7788889999 6666555555444 37999999887643
No 91
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.82 E-value=2.6 Score=29.39 Aligned_cols=50 Identities=22% Similarity=0.449 Sum_probs=36.7
Q ss_pred CCCccccccCccCC---CC-CceecCCCCccCHHHHH-HHHhcCCCCCccCCCCc
Q 046929 177 DEDVCPTCLDEYTP---EN-PKITTRCSHHFHLGCIY-EWLERSESCPICGKEME 226 (231)
Q Consensus 177 ~~~~C~ICle~~~~---~~-~~~~l~C~H~Fh~~CI~-~Wl~~s~~CPvCr~~~~ 226 (231)
....|.||-++.-. ++ -+..--|+--.|..|+. ++-+.++.||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45799999998653 32 23344588889999995 44467789999998774
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=79.94 E-value=1.3 Score=29.01 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=24.5
Q ss_pred CCCCCCccccccCccCCCCCcee-c-CCCCccCHHHHH
Q 046929 174 STEDEDVCPTCLDEYTPENPKIT-T-RCSHHFHLGCIY 209 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~-l-~C~H~Fh~~CI~ 209 (231)
..+....|++|...+..+...+. - .|.--||..|+.
T Consensus 4 ~~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 4 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35667889999999876554443 3 688999999984
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.08 E-value=0.57 Score=34.02 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=31.1
Q ss_pred CCccccccCcc-CCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCC
Q 046929 178 EDVCPTCLDEY-TPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGK 223 (231)
Q Consensus 178 ~~~C~ICle~~-~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~ 223 (231)
-..|.||.+.- ..++.+..-.|...||..|+..-|... =.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34788888753 223344445689999999997655432 27999975
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.40 E-value=0.22 Score=35.06 Aligned_cols=50 Identities=20% Similarity=0.439 Sum_probs=33.8
Q ss_pred CCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCC
Q 046929 174 STEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGK 223 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~ 223 (231)
...+...|.||...-..+..+..-.|...||..|+..=|... =.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345677899998875433344555688999999997433322 26999964
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.54 E-value=2.3 Score=29.81 Aligned_cols=47 Identities=26% Similarity=0.536 Sum_probs=29.4
Q ss_pred CCCCccccccCccCCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCCCCc
Q 046929 176 EDEDVCPTCLDEYTPENPKITTR--CS-HHFHLGCIYEWLER----SESCPICGKEME 226 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----s~~CPvCr~~~~ 226 (231)
.+...| ||..... +.-+..=. |. .-||..||. |.. .-.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 345567 9988653 33222233 54 579999997 332 337999987643
No 96
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.34 E-value=5 Score=27.42 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCCCCccccccCccCCCCCceecC-CCCccCHHHHHHHHhc
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTR-CSHHFHLGCIYEWLER 214 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~ 214 (231)
......|.+|.|.+++..-+-... =+|.||..|-...+++
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 345678999999998743222111 2599999999999875
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.44 E-value=0.97 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=31.3
Q ss_pred CCCccccccCccCCCCCceecCCCCccCHHHHHHHHhc---CCCCCccCC
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER---SESCPICGK 223 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~---s~~CPvCr~ 223 (231)
+...| ||-.....+.-+..-.|.--||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 89877665554455568899999998653322 248999974
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.22 E-value=1.9 Score=29.08 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCCCCccccccCccCCCCC-ceecCCCCccCHHHHHHHHh-----cCCCCCccCCC
Q 046929 175 TEDEDVCPTCLDEYTPENP-KITTRCSHHFHLGCIYEWLE-----RSESCPICGKE 224 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl~-----~s~~CPvCr~~ 224 (231)
..+...| ||...++.+.. +..-.|..-||..|+..-.. ..-.||.|+..
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 3445556 99988864333 33345888999999953221 34589999865
No 99
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.98 E-value=0.51 Score=32.08 Aligned_cols=45 Identities=22% Similarity=0.558 Sum_probs=29.6
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhc-----CCCCCccCC
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-----SESCPICGK 223 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----s~~CPvCr~ 223 (231)
..|.||...-..+..+..-.|...||..|+..=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378899865333334444568899999999844432 226998864
No 100
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=75.94 E-value=1.8 Score=28.73 Aligned_cols=47 Identities=26% Similarity=0.536 Sum_probs=29.0
Q ss_pred CCCCccccccCccCCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCCCCc
Q 046929 176 EDEDVCPTCLDEYTPENPKITTR--CS-HHFHLGCIYEWLER----SESCPICGKEME 226 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----s~~CPvCr~~~~ 226 (231)
.+...| ||..... +.-+..=. |. .-||..||. |.. .-.||.|+....
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 445667 8988643 33222223 55 589999997 433 237999987654
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=74.97 E-value=0.83 Score=29.65 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=34.7
Q ss_pred CCCCCccccccCccCC--CCCceecCCCCccCHHHHHHHHh-------cCCCCCccCCCC
Q 046929 175 TEDEDVCPTCLDEYTP--ENPKITTRCSHHFHLGCIYEWLE-------RSESCPICGKEM 225 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI~~Wl~-------~s~~CPvCr~~~ 225 (231)
..++..|.||...... +..+..-.|.-.||..|+..-|. ..=.||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4567899999987532 33344456889999999875432 223799986544
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.08 E-value=2.2 Score=29.54 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=34.5
Q ss_pred CCCCCCCccccccCcc--CCCCCceecCCCCccCHHHHHHHHh--cCCCCCccCCCCc
Q 046929 173 TSTEDEDVCPTCLDEY--TPENPKITTRCSHHFHLGCIYEWLE--RSESCPICGKEME 226 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~--~~~~~~~~l~C~H~Fh~~CI~~Wl~--~s~~CPvCr~~~~ 226 (231)
...+++..|.||...- ..++.+..-.|.-.||..|+..-+. ..=.||.|.....
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 4456788999999764 2122333345888999999975331 2237998865443
No 103
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=74.05 E-value=0.45 Score=31.67 Aligned_cols=45 Identities=24% Similarity=0.611 Sum_probs=27.2
Q ss_pred ccccccCccCCCCCceecCCCCccCHHHHHHHHhc-----CCCCCccCCC
Q 046929 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-----SESCPICGKE 224 (231)
Q Consensus 180 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----s~~CPvCr~~ 224 (231)
.|.||...-..+..+.--.|...||..|+..=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45677653222223333458899999999854432 2279999753
No 104
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.02 E-value=1.4 Score=29.49 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=30.3
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHH------H---hcCCCCCccCCC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEW------L---ERSESCPICGKE 224 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~W------l---~~s~~CPvCr~~ 224 (231)
...| ||...+..+.-+..-.|..-||..|+..- | ...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4556 89888764333334458889999999421 1 245689999753
No 105
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=70.10 E-value=4.4 Score=30.74 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=34.1
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHh---------c--CCCCCccCCC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLE---------R--SESCPICGKE 224 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---------~--s~~CPvCr~~ 224 (231)
.....++.|.||.+. |+.+-.-.|-..||..||..=|. . .=.||+|+..
T Consensus 58 d~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345567899999875 33344446889999999996542 1 2279999753
No 106
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=69.02 E-value=3.8 Score=27.17 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=32.8
Q ss_pred CCCCCCCccccccCcc--CCCCCceecCCCCccCHHHHHHHHh--cCCCCCccCC
Q 046929 173 TSTEDEDVCPTCLDEY--TPENPKITTRCSHHFHLGCIYEWLE--RSESCPICGK 223 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~--~~~~~~~~l~C~H~Fh~~CI~~Wl~--~s~~CPvCr~ 223 (231)
.....++.|.||.+.- ..+..+..-.|.-.||..|+..-+. ..=.||.|+.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456788999998764 2223333446889999999974321 1226888854
No 107
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=68.74 E-value=1.6 Score=27.04 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=28.6
Q ss_pred ccccccCccCCCCCcee-c-CCCCccCHHHHHHH----HhcCCCCCccC
Q 046929 180 VCPTCLDEYTPENPKIT-T-RCSHHFHLGCIYEW----LERSESCPICG 222 (231)
Q Consensus 180 ~C~ICle~~~~~~~~~~-l-~C~H~Fh~~CI~~W----l~~s~~CPvCr 222 (231)
.|.||...+..+...+. - .|.--||..|+..- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47899888865444433 3 58888999998532 13456899885
No 108
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=68.25 E-value=0.79 Score=30.28 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHh---cCCCCCccCC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLE---RSESCPICGK 223 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---~s~~CPvCr~ 223 (231)
....+...| ||...+..+.-+..-.|..-||..|+..--. ..-.||.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 444556778 9988766322333445889999999854221 2347888864
No 109
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=65.14 E-value=1.7 Score=35.58 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=27.4
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhc-----CCCCCccCCC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER-----SESCPICGKE 224 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----s~~CPvCr~~ 224 (231)
+..|.||...-..+.-+..-.|...||..|+..=|.. .=.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888765333344455568899999999854432 1269999753
No 110
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=64.67 E-value=4.6 Score=29.18 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=23.5
Q ss_pred CccccccCccC-------CCCCceecCCCCccCHHHHHHH
Q 046929 179 DVCPTCLDEYT-------PENPKITTRCSHHFHLGCIYEW 211 (231)
Q Consensus 179 ~~C~ICle~~~-------~~~~~~~l~C~H~Fh~~CI~~W 211 (231)
+.|.||+..-. .++-+.-..|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 57999987642 1234455678999999999754
No 111
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.34 E-value=6 Score=26.37 Aligned_cols=42 Identities=17% Similarity=0.559 Sum_probs=29.9
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
......|.-|-+.+..++.+.. =+..||..|. .|-.|++.|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 3456789999998876554443 3678888774 6888887764
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=64.20 E-value=3.4 Score=30.81 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCCCCCccccccCccCCCCCceecCCCCccCHHHHHHH-----H-hc-----CCCCCccCCC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEW-----L-ER-----SESCPICGKE 224 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~W-----l-~~-----s~~CPvCr~~ 224 (231)
.....++.|.||.+. ++.+-.-.|-..||..||..= | +. .=.|++|+.+
T Consensus 52 d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345567789999875 222333458899999999863 2 11 1379999653
No 113
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.70 E-value=0.3 Score=35.67 Aligned_cols=49 Identities=16% Similarity=0.402 Sum_probs=32.0
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCCCcC
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS----ESCPICGKEMEF 227 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s----~~CPvCr~~~~~ 227 (231)
..|.||...-..+..+..-.|...||..|+..=|... =.||.|+..+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 3688887764444444555688999999998544322 268888665433
No 114
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=62.74 E-value=3.8 Score=29.29 Aligned_cols=48 Identities=25% Similarity=0.453 Sum_probs=32.9
Q ss_pred CCccccccCccCCCCCceec--CCCCccCHHHHHHH------H----hcCCCCCccCCCC
Q 046929 178 EDVCPTCLDEYTPENPKITT--RCSHHFHLGCIYEW------L----ERSESCPICGKEM 225 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~W------l----~~s~~CPvCr~~~ 225 (231)
...|.||...|.++...+.= .|.--||..|+.-= | ...-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46799999998765443332 58889999998421 1 0345899997654
No 115
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=62.62 E-value=3.1 Score=26.72 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=28.9
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCcc
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPIC 221 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvC 221 (231)
..|--|+..|.....-....|++.||.+|=.---+.=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4588998888642223456799999999933222444689987
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=62.57 E-value=0.71 Score=31.35 Aligned_cols=44 Identities=25% Similarity=0.595 Sum_probs=26.3
Q ss_pred ccccccCccCCCCCceecCCCCccCHHHHHHHHhcC-----CCCCccCC
Q 046929 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERS-----ESCPICGK 223 (231)
Q Consensus 180 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s-----~~CPvCr~ 223 (231)
.|.||...-..+..+..-.|...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 456665543322223333578899999998655431 27998875
No 117
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=60.67 E-value=6.7 Score=25.69 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=25.6
Q ss_pred CCCCCccccccCccCCCCCceecCC-CCccCHHHHHH
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRC-SHHFHLGCIYE 210 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C-~H~Fh~~CI~~ 210 (231)
.++..-|.||.++-. ++.+.| +-+||..|..+
T Consensus 5 ~ee~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT----LRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSCCC----EEETTTTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCCCe----EEecCCCCceehHHHHHH
Confidence 455677999999833 788999 78999999655
No 118
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.76 E-value=3.7 Score=30.81 Aligned_cols=34 Identities=12% Similarity=0.330 Sum_probs=26.0
Q ss_pred CCCCccccccCccC-CCC-CceecCCCCccCHHHHH
Q 046929 176 EDEDVCPTCLDEYT-PEN-PKITTRCSHHFHLGCIY 209 (231)
Q Consensus 176 ~~~~~C~ICle~~~-~~~-~~~~l~C~H~Fh~~CI~ 209 (231)
..+..|.+|...|. .++ ......|.|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56789999999994 333 45667799999998843
No 119
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.15 E-value=9.1 Score=25.95 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred CCCCCCCccccccCccCCCCC-ceecCCCCccCHHHHHHH
Q 046929 173 TSTEDEDVCPTCLDEYTPENP-KITTRCSHHFHLGCIYEW 211 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 211 (231)
....+...|.+|...|..-.. ...-.||++||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 344567789999999986432 234569999999997654
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=57.32 E-value=0.98 Score=29.68 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=27.4
Q ss_pred CCCCccccccCccCCCCCceec---CCCCccCHHHHHHH---Hh-----cCCCCCccCC
Q 046929 176 EDEDVCPTCLDEYTPENPKITT---RCSHHFHLGCIYEW---LE-----RSESCPICGK 223 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l---~C~H~Fh~~CI~~W---l~-----~s~~CPvCr~ 223 (231)
++...| ||-.....+. .+.- .|..-||..|+--- .. .+-.||.||.
T Consensus 8 e~~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 334456 8976655443 4433 38888999998321 01 1347999974
No 121
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.12 E-value=11 Score=25.08 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=27.9
Q ss_pred CCCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 175 TEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
......|..|-..+...+.+. -=+..||..|. .|-.|++.|.
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcC
Confidence 345678999998886544433 24678888873 5667766654
No 122
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=56.05 E-value=6.8 Score=28.14 Aligned_cols=44 Identities=27% Similarity=0.556 Sum_probs=28.2
Q ss_pred CCCCCCccccccCccCCCCCceec---CCCCccCHHHHHHHHhcC----CCCCccCC
Q 046929 174 STEDEDVCPTCLDEYTPENPKITT---RCSHHFHLGCIYEWLERS----ESCPICGK 223 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~~~~l---~C~H~Fh~~CI~~Wl~~s----~~CPvCr~ 223 (231)
..+.++.|.+|.+. |+ ++.= .|-..||..|+. |... -.||.|.-
T Consensus 11 ~~~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred cCCCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 34567889999842 22 3332 477899999997 5432 25776543
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.70 E-value=8.6 Score=26.51 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=27.9
Q ss_pred CCCCCccccccCccCCCC-CceecCCCCccCHHHHHHHH
Q 046929 175 TEDEDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYEWL 212 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~Wl 212 (231)
..+...|.+|...|..-. ....-.||++||..|...++
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345678999999998633 23345699999999976543
No 124
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.25 E-value=9.1 Score=25.84 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCCCCCccccccCccCCCCC-ceecCCCCccCHHHHHHH
Q 046929 174 STEDEDVCPTCLDEYTPENP-KITTRCSHHFHLGCIYEW 211 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 211 (231)
...+...|.+|...|..-.. ...-.||.+||..|....
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 44556789999999986332 234569999999997653
No 125
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.27 E-value=6.1 Score=25.78 Aligned_cols=40 Identities=20% Similarity=0.464 Sum_probs=26.5
Q ss_pred CCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
....|..|-+.+..++.+. --+..||..|. .|-.|++.|.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccC
Confidence 3567888888877544332 34677887763 6777877765
No 126
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.47 E-value=11 Score=25.57 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=27.3
Q ss_pred CCCCCCCccccccCccCCCC-CceecCCCCccCHHHHHH
Q 046929 173 TSTEDEDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYE 210 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~ 210 (231)
....+...|.+|...|..-. .-..-.||.+||..|...
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34456678999999997633 223346999999999654
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.31 E-value=10 Score=27.81 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=27.5
Q ss_pred CCCCCCccccccCccCCCC-CceecCCCCccCHHHHHHH
Q 046929 174 STEDEDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYEW 211 (231)
Q Consensus 174 ~~~~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~W 211 (231)
...+...|.+|...|..-. ....-.||++||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3445678999999998633 2234569999999997543
No 128
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.71 E-value=1.5 Score=28.07 Aligned_cols=43 Identities=26% Similarity=0.568 Sum_probs=25.5
Q ss_pred CCCccccccCccCCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCC
Q 046929 177 DEDVCPTCLDEYTPENPKITTR--CS-HHFHLGCIYEWLER----SESCPICGK 223 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----s~~CPvCr~ 223 (231)
+...| ||..... +.-+..=. |. .-||..|+. |.. .-.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 8987643 32122223 44 579999997 433 237998864
No 129
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.44 E-value=2.3 Score=30.49 Aligned_cols=45 Identities=18% Similarity=0.435 Sum_probs=29.0
Q ss_pred ccccccCccCCCCCceecCCCCccCHHHHHHHHhc----CCCCCccCCC
Q 046929 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLER----SESCPICGKE 224 (231)
Q Consensus 180 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----s~~CPvCr~~ 224 (231)
.|.||...-..+..+..-.|...||..|+..=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765443333444568899999999754432 2368888654
No 130
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=50.09 E-value=3.6 Score=29.11 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=26.1
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
+..||+|..+++.... +.+|..|=.. +.....||-|.++|.+
T Consensus 32 ~~~CP~Cq~eL~~~g~-------~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG-------HARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEETT-------EEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred cccCccCCCcceecCC-------EEECccccch-hhccccCcchhhHHHH
Confidence 4789999988764222 2223334221 3556689999998753
No 131
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.03 E-value=15 Score=24.12 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=28.4
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
.....|..|-+.+.. . .+.--+..||..|. .|-.|++.|.
T Consensus 13 ~~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 446789999988875 2 33445788998884 6788877653
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.14 E-value=13 Score=24.44 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=24.2
Q ss_pred CCccccccCccCCCC-CceecCCCCccCHHHHHH
Q 046929 178 EDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYE 210 (231)
Q Consensus 178 ~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~ 210 (231)
+..|.+|...|..-. ....-.||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 358999999998633 223346999999999754
No 133
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=48.89 E-value=2.6 Score=32.66 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=30.7
Q ss_pred CCCCccccccCccCCCC-CceecCCCCccCHHHHHHHH-----hcCCCCCccCC
Q 046929 176 EDEDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYEWL-----ERSESCPICGK 223 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~Wl-----~~s~~CPvCr~ 223 (231)
++...| ||...+..+. -+..-.|.-.||..|+..-. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456678 9998875433 23344688999999995221 12447999975
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=48.15 E-value=11 Score=25.98 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=26.2
Q ss_pred CCCCCccccccCccCCCCC-ceecCCCCccCHHHHHHH
Q 046929 175 TEDEDVCPTCLDEYTPENP-KITTRCSHHFHLGCIYEW 211 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 211 (231)
..+...|.+|...|..-.. ...-.||++||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 4556789999999986332 223458999999987543
No 135
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=47.55 E-value=8.2 Score=20.98 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=19.1
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHH
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGC 207 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~C 207 (231)
.+.|+.|-......+.+. -=|..||..|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CCcCCccCCEEecceeEE--ECCeEecccC
Confidence 357899988876543333 2468899887
No 136
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=47.50 E-value=4.3 Score=23.01 Aligned_cols=14 Identities=21% Similarity=0.807 Sum_probs=10.2
Q ss_pred CCCccccccCccCC
Q 046929 177 DEDVCPTCLDEYTP 190 (231)
Q Consensus 177 ~~~~C~ICle~~~~ 190 (231)
+...||||+..+..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 34678888887765
No 137
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=47.47 E-value=1.9 Score=27.50 Aligned_cols=44 Identities=23% Similarity=0.530 Sum_probs=26.2
Q ss_pred CCCCccccccCccCCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTR--CS-HHFHLGCIYEWLER----SESCPICGK 223 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----s~~CPvCr~ 223 (231)
.+...| ||..... +.-+..=. |. .-||..|+. |.. .-.||.|++
T Consensus 7 ~e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344556 9987643 32222223 55 589999997 332 237999865
No 138
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.42 E-value=17 Score=23.92 Aligned_cols=40 Identities=25% Similarity=0.547 Sum_probs=24.3
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
.....|.-|-+.+. +..+ .--+..||..|. .|-.|++.|.
T Consensus 13 ~~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred cCCCCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCccC
Confidence 34567888877776 2222 234667777663 6777776654
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=47.41 E-value=4.2 Score=26.60 Aligned_cols=46 Identities=11% Similarity=0.014 Sum_probs=27.2
Q ss_pred CCCccccccCccCCCCCceecCCCCccCH-HHHHHHHhcCCCCCccCCCCc
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHL-GCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~-~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
+-..|..|...+..+. ....=+..||. .|..+ .-...|-.|...+.
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~--~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSA--MFGPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHH--HSSCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHH--HhCccCCCcCCcee
Confidence 4567888877776532 22234566777 57654 33456777765443
No 140
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=46.27 E-value=4 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=18.6
Q ss_pred ceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 194 KITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 194 ~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
.....||+.|. .-+.....||.|+.+...
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 34566899881 122345689999986543
No 141
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.79 E-value=25 Score=23.53 Aligned_cols=41 Identities=15% Similarity=0.377 Sum_probs=28.2
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
.....|..|-+.+.. . .+.--+..||..|. .|-.|++.|..
T Consensus 23 ~~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-A--VVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-C--CEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-c--EEEECCceECccCC--------EecCCCCCCCC
Confidence 445679999888774 2 23345678888773 68888877653
No 142
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=45.40 E-value=9 Score=27.13 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=10.3
Q ss_pred cCHHHHHHHHh
Q 046929 203 FHLGCIYEWLE 213 (231)
Q Consensus 203 Fh~~CI~~Wl~ 213 (231)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 143
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.32 E-value=9 Score=27.16 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=10.3
Q ss_pred cCHHHHHHHHh
Q 046929 203 FHLGCIYEWLE 213 (231)
Q Consensus 203 Fh~~CI~~Wl~ 213 (231)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 144
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.09 E-value=4.1 Score=28.09 Aligned_cols=51 Identities=18% Similarity=0.362 Sum_probs=33.7
Q ss_pred CCCCccccccCccCC--CCCceecCCCCccCHHHHHHHHhc--------CCCCCccCCCCc
Q 046929 176 EDEDVCPTCLDEYTP--ENPKITTRCSHHFHLGCIYEWLER--------SESCPICGKEME 226 (231)
Q Consensus 176 ~~~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~--------s~~CPvCr~~~~ 226 (231)
+.+..|.||...-.. +..+..-.|...||..|+..-|.+ .=.|+.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 346789999986432 223334458899999999865532 237999965443
No 145
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=44.82 E-value=5.4 Score=26.35 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=9.8
Q ss_pred HHHhcCCCCCccCCCCcC
Q 046929 210 EWLERSESCPICGKEMEF 227 (231)
Q Consensus 210 ~Wl~~s~~CPvCr~~~~~ 227 (231)
+||..--.||+|+.++.+
T Consensus 3 ~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKL 20 (69)
T ss_dssp CCGGGTCCCTTTCCCCEE
T ss_pred hHHHhheeCCCCCCcCeE
Confidence 344444566666665554
No 146
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.73 E-value=11 Score=28.79 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=26.4
Q ss_pred CCCCccccccCccC--CCCCceecCCCCccCHHHH
Q 046929 176 EDEDVCPTCLDEYT--PENPKITTRCSHHFHLGCI 208 (231)
Q Consensus 176 ~~~~~C~ICle~~~--~~~~~~~l~C~H~Fh~~CI 208 (231)
..+..|.+|+..|. .+.......|.|.+|..|=
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 35789999999864 3445667789999999996
No 147
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.53 E-value=19 Score=22.87 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=5.2
Q ss_pred CccccccCccC
Q 046929 179 DVCPTCLDEYT 189 (231)
Q Consensus 179 ~~C~ICle~~~ 189 (231)
..|..|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x61_A 6 SGCGGCGEDVV 16 (72)
T ss_dssp CCCSSSCSCCC
T ss_pred CCCccCCCccC
Confidence 34555554444
No 148
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.99 E-value=2.7 Score=30.98 Aligned_cols=46 Identities=17% Similarity=0.470 Sum_probs=28.6
Q ss_pred CCCCccccccCccCCCC-CceecCCCCccCHHHHHHHHhcCCCCCcc
Q 046929 176 EDEDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYEWLERSESCPIC 221 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvC 221 (231)
.....|.+|...|..-. ....-.||.+||..|....+.....|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 44568999999998632 23345699999999976655444455555
No 149
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.83 E-value=17 Score=23.13 Aligned_cols=41 Identities=17% Similarity=0.472 Sum_probs=23.9
Q ss_pred CCccccccCccCC-CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTP-ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|..|-+.+.. ++..++.--+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 4567777777664 111222335677777763 6677776654
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.91 E-value=15 Score=29.52 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=25.8
Q ss_pred CCCccccccCccCCCC-CceecCCCCccCHHHHHHH
Q 046929 177 DEDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYEW 211 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~W 211 (231)
++..|.+|...|..-. ....-.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 3579999999998633 2234569999999997543
No 151
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.61 E-value=17 Score=23.76 Aligned_cols=41 Identities=15% Similarity=0.463 Sum_probs=25.9
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
...|..|-+.+..++.. +..=+..||..|. .|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCC
Confidence 35788888877754432 2234667777763 67777776643
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.47 E-value=15 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=26.3
Q ss_pred CCCccccccCccCCCC-CceecCCCCccCHHHHHHH
Q 046929 177 DEDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYEW 211 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~W 211 (231)
+...|.+|...|..-. ....-.||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4579999999998633 2334569999999997654
No 153
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.13 E-value=14 Score=24.89 Aligned_cols=38 Identities=16% Similarity=0.398 Sum_probs=20.5
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|..|-+.+.. . .+..-+..||..|. .|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRG-P--FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCS-C--EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEecc-e--EEEECCccccccCC--------ccCCCCCCCC
Confidence 4567777666642 2 22234566666653 5666665554
No 154
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.41 E-value=27 Score=22.37 Aligned_cols=43 Identities=16% Similarity=0.495 Sum_probs=28.0
Q ss_pred CCCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 176 EDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
.....|.-|-+.+..++.++ ..-+..||..|. .|-.|++.|..
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCC
Confidence 34578999988887533332 224677888773 67778777653
No 155
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.15 E-value=15 Score=23.29 Aligned_cols=38 Identities=16% Similarity=0.476 Sum_probs=19.3
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|..|-+.+.. .. +..-+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV--IKAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCS-CC--EEETTEEECTTTS--------BCSSSCCBCS
T ss_pred CCcCccCCCEecc-eE--EEECcccccccCC--------EeCCCCCcCC
Confidence 3456666666552 21 2223455666553 4556655543
No 156
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.41 E-value=34 Score=22.62 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=30.8
Q ss_pred CCCCccccccCccCCCCCceec--CCCCccCHHHHHHHH---------hcCCCCCccCCCC
Q 046929 176 EDEDVCPTCLDEYTPENPKITT--RCSHHFHLGCIYEWL---------ERSESCPICGKEM 225 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl---------~~s~~CPvCr~~~ 225 (231)
.+...| ||-.....+.-+..- .|..-||..|+.--- ...-.||.|+...
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345667 898874443322233 688999999995321 1245899997643
No 157
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=35.83 E-value=17 Score=26.11 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=15.3
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHH
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWL 212 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl 212 (231)
-..|..|...+..+... ...=+..||..|..+.+
T Consensus 36 CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHh
Confidence 34555555555332211 22234555555555544
No 158
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.60 E-value=5.1 Score=26.31 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=9.7
Q ss_pred HHHhcCCCCCccCCCCcC
Q 046929 210 EWLERSESCPICGKEMEF 227 (231)
Q Consensus 210 ~Wl~~s~~CPvCr~~~~~ 227 (231)
+||..--.||+|+.++.+
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 344444556666665544
No 159
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.29 E-value=3.2 Score=26.27 Aligned_cols=13 Identities=31% Similarity=0.790 Sum_probs=6.5
Q ss_pred cCCCCCccCCCCc
Q 046929 214 RSESCPICGKEME 226 (231)
Q Consensus 214 ~s~~CPvCr~~~~ 226 (231)
.--.||+|+.++.
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 3345555555543
No 160
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.02 E-value=18 Score=23.58 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=31.3
Q ss_pred CCCCCccccccCccCCCCCc-eecCCCCccCHHHHHHHH----hcCCCCCccCCC
Q 046929 175 TEDEDVCPTCLDEYTPENPK-ITTRCSHHFHLGCIYEWL----ERSESCPICGKE 224 (231)
Q Consensus 175 ~~~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~Wl----~~s~~CPvCr~~ 224 (231)
......| ||...+..+... ..-.|..-||..|+..-- ...-.||.|+..
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3445668 798877655333 334588889999986421 223479999653
No 161
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.77 E-value=31 Score=22.16 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=12.1
Q ss_pred CccccccCccCCCCCceecCCCCccCHHH
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGC 207 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~C 207 (231)
..|.-|-..+.. ..+.--+..||.+|
T Consensus 6 ~~C~~C~~~I~~---~~v~a~~~~wH~~C 31 (73)
T 1wig_A 6 SGCDSCEKYITG---RVLEAGEKHYHPSC 31 (73)
T ss_dssp CSCSSSCCCCSS---CCBCCSSCCBCTTT
T ss_pred CCcccCCCEecC---eeEEeCCCCCCCCc
Confidence 345555555543 12222345555555
No 162
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.57 E-value=22 Score=22.50 Aligned_cols=39 Identities=21% Similarity=0.530 Sum_probs=22.6
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
..|..|-+.+..++..+ .-=+..||..|. .|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEE-EECcCeecccCC--------cccccCCccC
Confidence 46777777776533222 223566776663 5667766654
No 163
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=34.28 E-value=33 Score=21.87 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=31.1
Q ss_pred CCCCCCccccccCc-cCCCCCceecCCCCccCHHHHHHHHhcCC----CCCccCC
Q 046929 174 STEDEDVCPTCLDE-YTPENPKITTRCSHHFHLGCIYEWLERSE----SCPICGK 223 (231)
Q Consensus 174 ~~~~~~~C~ICle~-~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~----~CPvCr~ 223 (231)
...+..+|.||+.. |.++.-.+..-|.-.||..|=-.|-.+++ .|-+||+
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34678899999876 55555555566777777777555433332 3555554
No 164
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.21 E-value=13 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.494 Sum_probs=21.8
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
..||+|..++..+.. +.+|..|=.. +.....||-|.++|.
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~-~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKD-FSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCE-EEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC-------ceECcccccc-CCCcccCcchhhHHH
Confidence 568888877765332 1223333221 233347888877764
No 165
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.89 E-value=18 Score=23.41 Aligned_cols=41 Identities=17% Similarity=0.449 Sum_probs=25.6
Q ss_pred CCccccccCccCC-CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTP-ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|..|-+.+.. +....+.--+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 4578888888774 111223335677888774 6777777664
No 166
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.78 E-value=11 Score=24.04 Aligned_cols=38 Identities=18% Similarity=0.534 Sum_probs=26.1
Q ss_pred CCccccccCccCCCC---CceecC--CCCccCHHHHHHHHhcC
Q 046929 178 EDVCPTCLDEYTPEN---PKITTR--CSHHFHLGCIYEWLERS 215 (231)
Q Consensus 178 ~~~C~ICle~~~~~~---~~~~l~--C~H~Fh~~CI~~Wl~~s 215 (231)
...||-|.-.++... .+.... |++.|+..|...|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 457888877776533 233334 88999999998886543
No 167
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=33.67 E-value=9.2 Score=20.12 Aligned_cols=10 Identities=40% Similarity=1.205 Sum_probs=6.8
Q ss_pred CCCccCCCCc
Q 046929 217 SCPICGKEME 226 (231)
Q Consensus 217 ~CPvCr~~~~ 226 (231)
.||+|.+.|+
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 5788876654
No 168
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.25 E-value=34 Score=30.17 Aligned_cols=48 Identities=17% Similarity=0.404 Sum_probs=33.4
Q ss_pred CCCCCCCccccccCccCCCCCceec--CCCCccCHHHHHHHHhcC----------CCCCccCC
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITT--RCSHHFHLGCIYEWLERS----------ESCPICGK 223 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~s----------~~CPvCr~ 223 (231)
.....+..|.||-+.-+ .+..- .|...||..||..++-+. =.|=+|.-
T Consensus 88 D~DG~~~yCr~C~~Gg~---l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 88 DDDGYQSYCSICCSGET---LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp CSSSSBCSCTTTCCCSS---CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCCcccceEcCCCCe---EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34456778999987532 34444 689999999999998321 26877754
No 169
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.22 E-value=22 Score=27.32 Aligned_cols=39 Identities=13% Similarity=0.341 Sum_probs=27.1
Q ss_pred CCCCCCCccccccCccCCCCCceec--CCCCccCHHHHHHHHhc
Q 046929 173 TSTEDEDVCPTCLDEYTPENPKITT--RCSHHFHLGCIYEWLER 214 (231)
Q Consensus 173 ~~~~~~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~ 214 (231)
.....+..|.||-+.-+ .+..- .|...||..||..++..
T Consensus 74 DeDG~~~yC~wC~~Gg~---l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGRE---VLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CTTSSBSSCTTTSCCSE---EEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCCcceeeEecCCCe---EEeeCCCCCCCchhHHHHHHhcCH
Confidence 44456778999987522 22222 58899999999998754
No 170
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.07 E-value=20 Score=22.58 Aligned_cols=38 Identities=24% Similarity=0.546 Sum_probs=21.3
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|..|-+.+.. +.+ ..=+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGI--TYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCE--EETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceE--EECccccccCcC--------EECCCCCCCC
Confidence 3567777776653 222 223566776663 5666666653
No 171
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.75 E-value=20 Score=23.39 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=14.0
Q ss_pred hcCCCCCccCCCCcCcCC
Q 046929 213 ERSESCPICGKEMEFCES 230 (231)
Q Consensus 213 ~~s~~CPvCr~~~~~~~s 230 (231)
+-...||.|++-..+.+.
T Consensus 47 ElkKycp~c~kHtlhkE~ 64 (66)
T 3bbo_3 47 ELRKFCPYCYKHTIHGEI 64 (66)
T ss_dssp CCCCCCCSSSSCCCCCCC
T ss_pred EEEccCCCCCCeeeEEee
Confidence 446689999998887764
No 172
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.37 E-value=30 Score=21.75 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=5.7
Q ss_pred CccccccCccC
Q 046929 179 DVCPTCLDEYT 189 (231)
Q Consensus 179 ~~C~ICle~~~ 189 (231)
..|..|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (70)
T 2d8z_A 6 SGCVQCKKPIT 16 (70)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCcccCCeec
Confidence 34555555554
No 173
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.70 E-value=34 Score=21.57 Aligned_cols=40 Identities=18% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|..|-+.+..++. ++.--+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCC
Confidence 3467777777664322 22224566776663 5666666554
No 174
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.89 E-value=25 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.477 Sum_probs=24.5
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
..|..|-+.+.. .. +.--+..||..|. .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EV--VSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS-CC--EEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEecc-ce--EEECCceeCccCC--------ccccCCCCCC
Confidence 478888887773 32 2334677888774 5777777664
No 175
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.63 E-value=11 Score=20.33 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.3
Q ss_pred CCCCccCCCCc
Q 046929 216 ESCPICGKEME 226 (231)
Q Consensus 216 ~~CPvCr~~~~ 226 (231)
..||+|+..+.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 36888876554
No 176
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.51 E-value=42 Score=23.91 Aligned_cols=50 Identities=10% Similarity=-0.011 Sum_probs=32.6
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
-..|..|...+......-...=+..||..|..+-+..+..|-.|.+.|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 35678887777521111223346678999988866665689999887753
No 177
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.67 E-value=13 Score=28.31 Aligned_cols=26 Identities=23% Similarity=0.640 Sum_probs=16.1
Q ss_pred eecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 195 ITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 195 ~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
+...|||.|-.. .....||.|..++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 445577777432 22348999988754
No 178
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.20 E-value=28 Score=22.65 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=17.9
Q ss_pred ccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCC
Q 046929 180 VCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEM 225 (231)
Q Consensus 180 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~ 225 (231)
.|..|-+.+. +.. +..-+..||..|. .|-.|++.|
T Consensus 17 ~C~~C~~~I~-~~~--~~a~~~~~H~~CF--------~C~~C~~~L 51 (81)
T 1x6a_A 17 FCHGCSLLMT-GPF--MVAGEFKYHPECF--------ACMSCKVII 51 (81)
T ss_dssp BCTTTCCBCC-SCC--BCCTTCCBCTTSC--------BCTTTCCBC
T ss_pred cCccCCCCcC-ceE--EEECCceeccccC--------CccCCCCcc
Confidence 5666666655 222 2223555665553 455665555
No 179
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.73 E-value=4.2 Score=27.48 Aligned_cols=19 Identities=26% Similarity=0.634 Sum_probs=15.1
Q ss_pred CCCCccCHHHHHHHHhcCCCC
Q 046929 198 RCSHHFHLGCIYEWLERSESC 218 (231)
Q Consensus 198 ~C~H~Fh~~CI~~Wl~~s~~C 218 (231)
.|+|.||..|-..|=. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6999999999988833 445
No 180
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.16 E-value=5.2 Score=26.35 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=4.6
Q ss_pred CCCccCCCCc
Q 046929 217 SCPICGKEME 226 (231)
Q Consensus 217 ~CPvCr~~~~ 226 (231)
.||+|+.++.
T Consensus 10 ~CP~ck~~L~ 19 (68)
T 2jr6_A 10 VCPVTKGRLE 19 (68)
T ss_dssp BCSSSCCBCE
T ss_pred ECCCCCCcCe
Confidence 4444444443
No 181
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.01 E-value=25 Score=21.84 Aligned_cols=38 Identities=16% Similarity=0.472 Sum_probs=21.9
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|..|-+.+. +. .+..=+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCC
Confidence 346777777666 22 23334566776663 5667766654
No 182
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=25.49 E-value=15 Score=32.25 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCccccccCccCCCC-CceecCCCCccCHHHHHHHHh-------cCCCCCccCCCC
Q 046929 176 EDEDVCPTCLDEYTPEN-PKITTRCSHHFHLGCIYEWLE-------RSESCPICGKEM 225 (231)
Q Consensus 176 ~~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~Wl~-------~s~~CPvCr~~~ 225 (231)
.+...|.+|...|..-. ....-.||++||..|-..++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 44678999999997532 233456999999999977652 123677775544
No 183
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.16 E-value=5.2 Score=26.35 Aligned_cols=11 Identities=36% Similarity=1.138 Sum_probs=5.4
Q ss_pred CCCccCCCCcC
Q 046929 217 SCPICGKEMEF 227 (231)
Q Consensus 217 ~CPvCr~~~~~ 227 (231)
.||+|+.++.+
T Consensus 10 ~CP~ck~~L~~ 20 (68)
T 2hf1_A 10 VCPLCKGPLVF 20 (68)
T ss_dssp BCTTTCCBCEE
T ss_pred ECCCCCCcCeE
Confidence 45555554443
No 184
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.10 E-value=14 Score=24.23 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=13.6
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHH
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGC 207 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~C 207 (231)
...|..|-+.+..++.+ .--+..||..|
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a~~~~~H~~C 34 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QCDGRSFHRCC 34 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EETTEEEESSS
T ss_pred CCcCcCcCccccCceeE--EeCCccccccc
Confidence 34566666666543322 22345555555
No 185
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.98 E-value=47 Score=23.68 Aligned_cols=25 Identities=12% Similarity=0.301 Sum_probs=9.8
Q ss_pred CccCHHHHHHHHhcCCCCCccCCCC
Q 046929 201 HHFHLGCIYEWLERSESCPICGKEM 225 (231)
Q Consensus 201 H~Fh~~CI~~Wl~~s~~CPvCr~~~ 225 (231)
..||..|..+-+.....|..|.+.|
T Consensus 52 ~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 52 RKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp EEECHHHHHHHHCCCEECTTTCCEE
T ss_pred EEeecCchhhhCCCccChhhcCCcc
Confidence 3444444433222222444444443
No 186
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.36 E-value=25 Score=22.96 Aligned_cols=38 Identities=24% Similarity=0.709 Sum_probs=21.3
Q ss_pred CCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|..|-..+.. . ++..-+..||..|. .|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-R--ILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-C--CEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc-e--eEEECCccccHHhc--------CcccCCCccC
Confidence 4567777766652 2 22224566676653 5666666553
No 187
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.17 E-value=50 Score=22.29 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=29.3
Q ss_pred CCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
+-..|..|...+... .....=+..||..|..+ .-...|..|.+.|..
T Consensus 32 ~CF~C~~C~~~L~~~--~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANE--TFVAKDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSS--CCEEETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcC--eeECcCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 346778887777532 12233456788888633 335689999888763
No 188
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.12 E-value=42 Score=21.64 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=21.7
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
..|..|-+.+..+ .+..=+..||..|. .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhhC--------CcccCCCcCC
Confidence 4677777766542 23334566776663 5666766653
No 189
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.28 E-value=8.8 Score=24.58 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=26.2
Q ss_pred CCCccccccCccCCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCCC
Q 046929 177 DEDVCPTCLDEYTPENPKITTR--CS-HHFHLGCIYEWLER----SESCPICGKE 224 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----s~~CPvCr~~ 224 (231)
+...| ||..... +.-+..=. |. .-||..|+. |.. .-.||.|++.
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 44556 9988632 32122223 44 789999997 322 3379999653
No 190
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.90 E-value=5.9 Score=26.24 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=5.9
Q ss_pred CCCccccccCcc
Q 046929 177 DEDVCPTCLDEY 188 (231)
Q Consensus 177 ~~~~C~ICle~~ 188 (231)
+-..||+|...+
T Consensus 7 ~iL~CP~ck~~L 18 (70)
T 2js4_A 7 DILVCPVCKGRL 18 (70)
T ss_dssp CCCBCTTTCCBE
T ss_pred hheECCCCCCcC
Confidence 344555555543
No 191
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.79 E-value=83 Score=20.84 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=5.5
Q ss_pred CccccccCccC
Q 046929 179 DVCPTCLDEYT 189 (231)
Q Consensus 179 ~~C~ICle~~~ 189 (231)
..|.-|-+.+.
T Consensus 16 ~~C~~C~~~I~ 26 (91)
T 2d8y_A 16 ETCVECQKTVY 26 (91)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCccCCCccC
Confidence 44555555544
No 192
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=22.50 E-value=13 Score=23.27 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=13.3
Q ss_pred hcCCCCCccCCCCcCcCC
Q 046929 213 ERSESCPICGKEMEFCES 230 (231)
Q Consensus 213 ~~s~~CPvCr~~~~~~~s 230 (231)
+-...||.|++-+.+.++
T Consensus 36 elkKycp~~~kHtlhkE~ 53 (55)
T 2zjr_1 36 ELKKYDPVAKKHVVFREK 53 (55)
T ss_pred EEEccCCCCCCEEeEEEe
Confidence 445689999998777653
No 193
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.44 E-value=45 Score=21.64 Aligned_cols=39 Identities=23% Similarity=0.624 Sum_probs=23.0
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
..|..|-..+..+..+ +..=+..||..|. .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE-LFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCB-CCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEE-EEeCCccccccCC--------eecCCCCccC
Confidence 4688888777632222 1223567777663 5677776654
No 194
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.46 E-value=15 Score=22.09 Aligned_cols=8 Identities=50% Similarity=1.618 Sum_probs=6.4
Q ss_pred CCCccCCC
Q 046929 217 SCPICGKE 224 (231)
Q Consensus 217 ~CPvCr~~ 224 (231)
.||+|+..
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 89999764
No 195
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.32 E-value=39 Score=21.62 Aligned_cols=40 Identities=18% Similarity=0.446 Sum_probs=26.3
Q ss_pred CCccccccCccCC---CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 178 EDVCPTCLDEYTP---ENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 178 ~~~C~ICle~~~~---~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
...|+-|-..+.. +... +..=+..||..|. .|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSV-VAYEGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCE-EEETTEEEETTTC--------BCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCcee-EEECcceeCcccC--------EehhcCCCCC
Confidence 3578888888774 2222 2224678888773 6888888775
No 196
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=21.19 E-value=15 Score=22.68 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=14.2
Q ss_pred HhcCCCCCccCCCCcCcCC
Q 046929 212 LERSESCPICGKEMEFCES 230 (231)
Q Consensus 212 l~~s~~CPvCr~~~~~~~s 230 (231)
|+-...||.|++-..+.++
T Consensus 33 LelkKycp~~~khtlhkE~ 51 (52)
T 2ftc_P 33 LTLLHYDPVVKQRVLFVEK 51 (52)
T ss_pred eEEEccCCCCCceEeEEec
Confidence 4456689999998877664
No 197
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.13 E-value=45 Score=20.74 Aligned_cols=42 Identities=17% Similarity=0.528 Sum_probs=27.5
Q ss_pred CCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcC
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEF 227 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~~ 227 (231)
....|..|-..+..++.++ ..=+..||..|. .|=.|++.|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEE-EETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEE-EeCcCeeCcCCC--------cccCCCCCCCC
Confidence 3557888988887544332 234667887775 67778777643
No 198
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.66 E-value=43 Score=25.86 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=25.5
Q ss_pred CCCccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCC
Q 046929 177 DEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKE 224 (231)
Q Consensus 177 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~ 224 (231)
+-..|..|...+..+. ....=+..||..|..+.+ ...|-.|.+.
T Consensus 141 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~cy~~~f--~~kc~~C~~~ 184 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTT--LADKDGEIYCKGCYAKNF--GPKGFGFGQG 184 (192)
T ss_dssp TTCBCTTTCCBCCSSS--EEEETTEEEEHHHHHHHT--CCCCCCCCCC
T ss_pred hcCCccccCCCCCCCc--ccccCCEEeCHHHHHHhc--CCcCCCCCCc
Confidence 3466777766665432 223346677777776644 3456666654
No 199
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.20 E-value=40 Score=21.73 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=20.1
Q ss_pred CccccccCccCCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 046929 179 DVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEME 226 (231)
Q Consensus 179 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~s~~CPvCr~~~~ 226 (231)
..|..|-+.+.. .. +..=+..||..|. .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NY--LSAMDTVWHPECF--------VCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCS-SC--EEETTEEECTTTC--------BCSSSCCBSC
T ss_pred CccccCCCeecc-ee--EEECCCeEecCcC--------ChhhCCCCCC
Confidence 456777666653 22 2223556666653 5666666554
Done!