Query 046930
Match_columns 965
No_of_seqs 624 out of 4172
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 05:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.8E-72 6E-77 662.6 72.1 669 81-959 48-719 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 6E-72 1.3E-76 659.8 72.4 656 7-826 48-721 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.4E-59 9.5E-64 534.7 68.4 542 81-797 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-58 2.9E-63 530.7 67.3 544 117-829 367-913 (1060)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-52 4.3E-57 512.0 99.3 872 9-959 21-899 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-50 3.4E-55 495.2 95.6 846 45-965 20-871 (899)
7 PLN03081 pentatricopeptide (PP 100.0 1.9E-53 4E-58 490.0 53.6 467 211-826 88-558 (697)
8 PLN03081 pentatricopeptide (PP 100.0 5.1E-53 1.1E-57 486.4 53.1 472 84-794 87-561 (697)
9 PRK11447 cellulose synthase su 100.0 1.6E-31 3.4E-36 323.4 78.9 661 49-869 30-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4.6E-31 9.9E-36 319.4 76.6 662 13-825 30-740 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 5.9E-29 1.3E-33 284.8 71.5 219 626-866 514-736 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2.3E-28 5E-33 280.0 73.5 632 50-869 47-705 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 5.9E-29 1.3E-33 248.8 38.0 439 313-878 51-494 (966)
14 KOG2002 TPR-containing nuclear 100.0 4.6E-26 9.9E-31 241.4 59.1 442 307-754 267-744 (1018)
15 KOG2002 TPR-containing nuclear 100.0 9.1E-25 2E-29 231.6 62.8 568 191-826 146-746 (1018)
16 KOG4626 O-linked N-acetylgluco 100.0 5.8E-27 1.3E-31 234.6 36.0 380 345-851 116-500 (966)
17 KOG2076 RNA polymerase III tra 100.0 4E-21 8.6E-26 203.1 64.5 712 48-867 140-892 (895)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-20 3.9E-25 213.4 52.8 430 347-870 129-571 (615)
19 KOG2076 RNA polymerase III tra 99.9 1.5E-18 3.3E-23 183.8 62.5 667 16-822 145-892 (895)
20 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-20 5.7E-25 212.0 49.2 416 12-443 129-571 (615)
21 PRK15174 Vi polysaccharide exp 99.9 1.8E-19 3.9E-24 203.6 48.9 336 50-442 45-380 (656)
22 KOG0495 HAT repeat protein [RN 99.9 1.5E-16 3.3E-21 161.8 63.8 611 61-788 265-878 (913)
23 PRK15174 Vi polysaccharide exp 99.9 1.1E-19 2.5E-24 205.2 44.1 335 13-412 45-384 (656)
24 PRK11788 tetratricopeptide rep 99.9 1.8E-20 4E-25 203.1 34.5 258 623-898 109-377 (389)
25 PRK10049 pgaA outer membrane p 99.9 5.8E-19 1.3E-23 204.3 46.1 410 6-452 11-463 (765)
26 PRK10049 pgaA outer membrane p 99.9 3.9E-18 8.5E-23 197.4 46.4 405 44-481 12-459 (765)
27 PRK11788 tetratricopeptide rep 99.9 7.7E-19 1.7E-23 190.4 36.8 307 317-797 42-354 (389)
28 PRK14574 hmsH outer membrane p 99.9 1.2E-16 2.6E-21 180.2 52.8 452 312-826 36-514 (822)
29 PRK14574 hmsH outer membrane p 99.9 4.4E-17 9.5E-22 183.7 48.5 439 11-484 36-519 (822)
30 KOG0495 HAT repeat protein [RN 99.8 8.4E-14 1.8E-18 142.2 63.2 611 23-761 263-884 (913)
31 KOG2003 TPR repeat-containing 99.8 2.6E-16 5.6E-21 152.8 35.4 497 83-740 200-708 (840)
32 KOG0547 Translocase of outer m 99.8 4E-16 8.7E-21 153.5 32.4 426 348-824 118-565 (606)
33 KOG2003 TPR repeat-containing 99.8 2.5E-16 5.4E-21 152.9 30.2 284 554-855 420-708 (840)
34 KOG1915 Cell cycle control pro 99.7 4.2E-12 9.1E-17 125.0 51.3 111 621-734 437-548 (677)
35 KOG1915 Cell cycle control pro 99.7 2.7E-12 5.8E-17 126.3 48.7 437 246-825 74-536 (677)
36 KOG1155 Anaphase-promoting com 99.7 8.9E-13 1.9E-17 129.6 43.7 161 658-824 332-494 (559)
37 KOG4318 Bicoid mRNA stability 99.7 5.6E-14 1.2E-18 148.5 37.1 587 165-827 15-627 (1088)
38 KOG0547 Translocase of outer m 99.7 3.1E-14 6.8E-19 140.4 31.1 422 49-512 117-565 (606)
39 KOG4422 Uncharacterized conser 99.7 6.5E-12 1.4E-16 122.1 45.8 205 50-298 119-330 (625)
40 KOG3785 Uncharacterized conser 99.7 1.1E-12 2.3E-17 124.1 38.8 455 220-844 32-497 (557)
41 KOG1156 N-terminal acetyltrans 99.7 8.1E-12 1.8E-16 128.4 47.8 470 6-512 4-510 (700)
42 KOG4422 Uncharacterized conser 99.7 4.6E-12 1E-16 123.1 42.3 424 7-476 113-588 (625)
43 COG2956 Predicted N-acetylgluc 99.7 9.4E-14 2E-18 129.9 29.4 252 627-896 113-375 (389)
44 KOG1127 TPR repeat-containing 99.7 2.4E-11 5.2E-16 130.6 50.9 461 7-510 489-993 (1238)
45 KOG2047 mRNA splicing factor [ 99.7 9.3E-10 2E-14 113.1 59.9 624 7-825 24-687 (835)
46 KOG1156 N-terminal acetyltrans 99.7 1.2E-10 2.5E-15 120.1 52.0 155 57-238 17-171 (700)
47 KOG1127 TPR repeat-containing 99.7 1.7E-11 3.7E-16 131.7 47.8 486 26-579 473-993 (1238)
48 KOG1173 Anaphase-promoting com 99.7 3.4E-12 7.4E-17 129.0 40.2 175 620-800 345-526 (611)
49 PF13429 TPR_15: Tetratricopep 99.7 3.4E-16 7.4E-21 159.6 11.4 259 591-868 13-275 (280)
50 KOG4162 Predicted calmodulin-b 99.7 1.6E-09 3.4E-14 114.4 59.6 457 319-827 293-785 (799)
51 KOG0985 Vesicle coat protein c 99.7 5.1E-09 1.1E-13 112.9 63.8 778 3-866 353-1304(1666)
52 KOG1155 Anaphase-promoting com 99.7 5.1E-12 1.1E-16 124.3 38.3 180 620-804 363-548 (559)
53 KOG1126 DNA-binding cell divis 99.7 2.6E-14 5.6E-19 147.5 23.6 286 27-375 335-621 (638)
54 KOG2047 mRNA splicing factor [ 99.6 1.6E-09 3.5E-14 111.4 57.2 578 45-776 100-709 (835)
55 KOG1126 DNA-binding cell divis 99.6 4.6E-14 1E-18 145.7 25.1 282 534-824 334-619 (638)
56 KOG4318 Bicoid mRNA stability 99.6 1.1E-10 2.3E-15 124.3 49.0 83 172-257 201-283 (1088)
57 KOG1173 Anaphase-promoting com 99.6 5.5E-12 1.2E-16 127.6 37.4 510 47-702 16-533 (611)
58 KOG4162 Predicted calmodulin-b 99.6 2.7E-10 5.9E-15 120.0 51.2 422 375-870 318-783 (799)
59 KOG3616 Selective LIM binding 99.6 2.2E-10 4.7E-15 118.9 49.3 584 217-957 739-1351(1636)
60 PF13429 TPR_15: Tetratricopep 99.6 2.3E-15 5.1E-20 153.4 13.0 261 15-305 13-273 (280)
61 PRK10747 putative protoheme IX 99.6 1.1E-12 2.3E-17 140.0 32.6 285 565-869 96-389 (398)
62 TIGR00540 hemY_coli hemY prote 99.6 2.9E-12 6.3E-17 137.6 35.4 292 390-824 94-398 (409)
63 TIGR00540 hemY_coli hemY prote 99.6 1.1E-12 2.4E-17 140.8 32.1 289 562-868 93-397 (409)
64 PRK10747 putative protoheme IX 99.6 4.3E-12 9.3E-17 135.4 36.3 198 618-824 184-389 (398)
65 KOG3785 Uncharacterized conser 99.6 2.1E-10 4.5E-15 108.9 41.7 389 22-458 33-436 (557)
66 KOG3616 Selective LIM binding 99.6 7.2E-11 1.6E-15 122.3 39.3 308 595-963 715-1027(1636)
67 COG2956 Predicted N-acetylgluc 99.6 5.8E-12 1.3E-16 118.1 27.9 233 23-276 47-280 (389)
68 PRK12370 invasion protein regu 99.5 3.2E-12 6.9E-17 142.7 28.9 81 63-148 320-400 (553)
69 KOG0985 Vesicle coat protein c 99.5 1.3E-07 2.8E-12 102.4 63.8 734 43-863 356-1188(1666)
70 KOG1174 Anaphase-promoting com 99.5 1.1E-09 2.5E-14 106.3 39.3 188 630-824 309-499 (564)
71 COG3063 PilF Tfp pilus assembl 99.5 9.7E-12 2.1E-16 111.4 23.4 200 49-274 37-236 (250)
72 COG3071 HemY Uncharacterized e 99.5 2.1E-10 4.6E-15 111.7 33.6 294 322-789 96-389 (400)
73 KOG0548 Molecular co-chaperone 99.5 2.5E-10 5.5E-15 115.4 34.9 421 22-461 13-471 (539)
74 TIGR02521 type_IV_pilW type IV 99.5 1.6E-11 3.5E-16 123.0 26.3 205 44-274 28-232 (234)
75 TIGR02521 type_IV_pilW type IV 99.5 2.9E-11 6.3E-16 121.1 26.9 199 11-237 32-230 (234)
76 COG3063 PilF Tfp pilus assembl 99.5 5E-11 1.1E-15 106.9 24.4 209 11-249 36-244 (250)
77 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4E-15 112.1 29.3 288 59-409 96-390 (400)
78 KOG1840 Kinesin light chain [C 99.5 9.8E-12 2.1E-16 130.7 22.2 249 657-959 200-478 (508)
79 PRK12370 invasion protein regu 99.4 2.1E-11 4.6E-16 136.2 26.4 205 61-294 275-489 (553)
80 KOG0624 dsRNA-activated protei 99.4 6E-10 1.3E-14 105.4 31.4 335 46-416 37-377 (504)
81 KOG1129 TPR repeat-containing 99.4 7.6E-12 1.7E-16 117.2 18.6 227 49-304 225-453 (478)
82 PRK11189 lipoprotein NlpI; Pro 99.4 7.2E-11 1.6E-15 120.2 27.2 234 24-289 39-280 (296)
83 KOG0548 Molecular co-chaperone 99.4 4.3E-09 9.3E-14 106.7 38.1 97 348-446 227-330 (539)
84 KOG2376 Signal recognition par 99.4 1.2E-08 2.6E-13 104.5 41.4 148 636-787 356-517 (652)
85 KOG1840 Kinesin light chain [C 99.4 5.5E-11 1.2E-15 125.1 25.3 252 5-272 194-477 (508)
86 KOG1174 Anaphase-promoting com 99.4 1.8E-08 4E-13 98.2 39.3 419 53-482 49-504 (564)
87 KOG2376 Signal recognition par 99.4 6.5E-08 1.4E-12 99.2 45.1 148 671-822 356-517 (652)
88 PRK11189 lipoprotein NlpI; Pro 99.4 1.4E-10 3E-15 118.1 24.7 33 932-964 237-269 (296)
89 KOG1129 TPR repeat-containing 99.4 5E-11 1.1E-15 111.8 19.0 228 591-825 228-458 (478)
90 PF12569 NARP1: NMDA receptor- 99.4 3.1E-08 6.7E-13 106.3 42.1 295 181-512 10-333 (517)
91 KOG0624 dsRNA-activated protei 99.4 3.1E-09 6.7E-14 100.7 30.0 314 81-444 35-371 (504)
92 KOG3617 WD40 and TPR repeat-co 99.4 4.1E-08 8.8E-13 103.9 41.2 394 57-537 738-1189(1416)
93 KOG4340 Uncharacterized conser 99.3 4.5E-09 9.7E-14 97.6 29.3 319 52-406 15-372 (459)
94 KOG3617 WD40 and TPR repeat-co 99.3 8.9E-08 1.9E-12 101.4 42.0 238 174-441 725-994 (1416)
95 PF12569 NARP1: NMDA receptor- 99.3 9.3E-08 2E-12 102.7 40.7 284 22-338 15-333 (517)
96 KOG4340 Uncharacterized conser 99.3 1.8E-08 4E-13 93.7 28.0 323 13-371 13-372 (459)
97 KOG1125 TPR repeat-containing 99.2 7.8E-10 1.7E-14 113.0 20.6 226 590-826 289-528 (579)
98 cd05804 StaR_like StaR_like; a 99.2 5.6E-08 1.2E-12 103.9 33.3 70 7-77 3-73 (355)
99 KOG1125 TPR repeat-containing 99.2 4.1E-09 8.8E-14 107.9 21.9 238 57-301 295-563 (579)
100 cd05804 StaR_like StaR_like; a 99.2 1E-07 2.2E-12 102.0 33.2 304 45-374 4-336 (355)
101 PLN02789 farnesyltranstransfer 99.1 5.4E-08 1.2E-12 98.5 26.4 215 12-257 39-267 (320)
102 KOG2053 Mitochondrial inherita 99.1 2.7E-05 5.8E-10 84.8 47.0 555 186-788 20-606 (932)
103 PLN02789 farnesyltranstransfer 99.1 1.8E-07 3.9E-12 94.8 28.1 212 52-292 42-267 (320)
104 KOG2053 Mitochondrial inherita 99.0 9.9E-05 2.1E-09 80.6 53.2 227 22-277 20-258 (932)
105 PF13041 PPR_2: PPR repeat fam 99.0 1.3E-09 2.9E-14 76.1 6.6 49 173-221 1-49 (50)
106 TIGR03302 OM_YfiO outer membra 99.0 6.9E-08 1.5E-12 95.9 21.4 60 180-239 171-232 (235)
107 PF13041 PPR_2: PPR repeat fam 98.9 2.2E-09 4.9E-14 75.0 6.4 49 654-702 1-49 (50)
108 COG5010 TadD Flp pilus assembl 98.9 2.2E-07 4.8E-12 86.1 20.7 157 51-234 70-226 (257)
109 TIGR03302 OM_YfiO outer membra 98.9 9.7E-08 2.1E-12 94.8 20.1 188 45-274 31-232 (235)
110 PF04733 Coatomer_E: Coatomer 98.9 6.5E-08 1.4E-12 96.7 16.7 250 184-443 10-265 (290)
111 KOG1914 mRNA cleavage and poly 98.9 0.00016 3.6E-09 74.1 41.0 151 637-789 347-500 (656)
112 PRK15359 type III secretion sy 98.9 1.1E-07 2.4E-12 84.6 16.4 109 32-150 14-122 (144)
113 PRK04841 transcriptional regul 98.9 2E-05 4.3E-10 96.1 41.3 204 623-826 533-761 (903)
114 PRK04841 transcriptional regul 98.8 1.6E-05 3.4E-10 97.0 39.2 376 50-444 344-761 (903)
115 PF04733 Coatomer_E: Coatomer 98.8 2.7E-07 5.8E-12 92.4 19.3 246 562-824 10-264 (290)
116 COG5010 TadD Flp pilus assembl 98.8 6.4E-07 1.4E-11 83.2 19.9 180 65-273 51-230 (257)
117 PRK15179 Vi polysaccharide bio 98.8 1.4E-06 3E-11 97.7 26.7 206 7-252 24-229 (694)
118 PRK10370 formate-dependent nit 98.8 4.4E-07 9.5E-12 85.6 19.3 121 60-206 52-175 (198)
119 PRK15359 type III secretion sy 98.8 9.3E-08 2E-12 85.1 13.8 111 12-130 26-136 (144)
120 PRK14720 transcript cleavage f 98.8 6.1E-05 1.3E-09 85.4 38.2 154 174-356 115-268 (906)
121 PRK10370 formate-dependent nit 98.8 2.1E-07 4.6E-12 87.7 16.1 120 24-150 52-174 (198)
122 KOG1128 Uncharacterized conser 98.8 4.7E-07 1E-11 95.6 18.3 213 625-870 402-616 (777)
123 PRK15179 Vi polysaccharide bio 98.7 1.9E-06 4.1E-11 96.7 21.8 163 26-217 67-229 (694)
124 PRK14720 transcript cleavage f 98.7 4.3E-06 9.4E-11 94.4 24.5 134 7-148 28-177 (906)
125 KOG3060 Uncharacterized conser 98.7 1.3E-05 2.8E-10 73.8 22.0 184 634-825 25-220 (289)
126 TIGR02552 LcrH_SycD type III s 98.6 9.2E-07 2E-11 78.9 14.3 111 33-150 5-115 (135)
127 KOG3081 Vesicle coat complex C 98.6 3.9E-05 8.5E-10 71.3 24.2 250 560-824 15-270 (299)
128 KOG1128 Uncharacterized conser 98.6 2.8E-06 6.1E-11 90.0 18.8 211 594-826 406-617 (777)
129 COG4783 Putative Zn-dependent 98.6 4.7E-06 1E-10 84.5 19.5 152 45-240 304-455 (484)
130 TIGR02552 LcrH_SycD type III s 98.6 2.2E-06 4.8E-11 76.4 15.0 112 68-205 4-115 (135)
131 COG4783 Putative Zn-dependent 98.6 7.7E-06 1.7E-10 83.0 19.9 181 46-274 273-454 (484)
132 KOG3081 Vesicle coat complex C 98.6 3.9E-05 8.5E-10 71.3 22.7 247 185-442 18-270 (299)
133 KOG1070 rRNA processing protei 98.5 4.8E-05 1E-09 86.6 27.5 135 621-759 1530-1667(1710)
134 KOG1070 rRNA processing protei 98.5 4.8E-05 1E-09 86.6 26.3 247 26-301 1440-1692(1710)
135 KOG3060 Uncharacterized conser 98.5 6.6E-05 1.4E-09 69.3 22.4 189 25-240 26-221 (289)
136 KOG0550 Molecular chaperone (D 98.5 0.00012 2.6E-09 72.6 24.7 288 387-720 56-350 (486)
137 PRK15363 pathogenicity island 98.5 3.3E-06 7.2E-11 73.1 12.3 98 47-149 35-132 (157)
138 PF09976 TPR_21: Tetratricopep 98.5 3.7E-06 8.1E-11 75.4 13.3 133 9-146 11-144 (145)
139 KOG0553 TPR repeat-containing 98.4 2.4E-06 5.3E-11 81.0 11.9 98 17-123 88-185 (304)
140 KOG0550 Molecular chaperone (D 98.4 0.00013 2.9E-09 72.2 23.9 176 387-586 176-354 (486)
141 PRK15363 pathogenicity island 98.3 1.3E-05 2.8E-10 69.5 13.3 99 10-114 35-133 (157)
142 PF09976 TPR_21: Tetratricopep 98.3 1.8E-05 4E-10 71.0 14.6 128 50-201 15-144 (145)
143 PRK10866 outer membrane biogen 98.3 0.00025 5.4E-09 69.4 22.7 188 46-272 31-239 (243)
144 PF12895 Apc3: Anaphase-promot 98.3 1.2E-06 2.6E-11 69.8 5.5 82 24-109 2-83 (84)
145 KOG1914 mRNA cleavage and poly 98.3 0.0081 1.8E-07 62.3 42.7 187 637-827 309-503 (656)
146 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.2E-05 4.9E-10 68.1 13.7 102 12-114 4-106 (119)
147 KOG0553 TPR repeat-containing 98.3 1.4E-05 3E-10 76.0 12.5 95 50-149 84-178 (304)
148 PF12854 PPR_1: PPR repeat 98.3 1.5E-06 3.2E-11 54.0 4.1 31 722-752 3-33 (34)
149 KOG1130 Predicted G-alpha GTPa 98.2 3.1E-05 6.6E-10 76.2 14.7 132 693-824 197-343 (639)
150 PF12854 PPR_1: PPR repeat 98.2 1.9E-06 4E-11 53.6 4.2 32 170-201 2-33 (34)
151 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.2E-05 7E-10 67.1 13.7 103 48-150 3-106 (119)
152 PRK02603 photosystem I assembl 98.2 4.4E-05 9.5E-10 70.9 14.9 89 45-135 33-121 (172)
153 COG4700 Uncharacterized protei 98.2 0.00038 8.3E-09 60.9 18.7 102 45-148 87-188 (251)
154 PLN03088 SGT1, suppressor of 98.2 3.3E-05 7.2E-10 80.8 14.8 103 16-126 8-110 (356)
155 CHL00033 ycf3 photosystem I as 98.2 3.3E-05 7.1E-10 71.6 13.1 119 27-147 15-140 (168)
156 PRK10866 outer membrane biogen 98.2 0.00083 1.8E-08 65.8 23.0 185 12-237 34-239 (243)
157 PF12895 Apc3: Anaphase-promot 98.1 4.1E-06 8.8E-11 66.7 5.3 83 60-146 2-84 (84)
158 PLN03088 SGT1, suppressor of 98.1 4.4E-05 9.5E-10 79.9 14.5 95 51-150 6-100 (356)
159 cd00189 TPR Tetratricopeptide 98.1 3.1E-05 6.8E-10 64.2 11.0 94 50-148 3-96 (100)
160 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.3E-09 76.2 15.9 129 46-203 168-296 (395)
161 PRK02603 photosystem I assembl 98.1 8.2E-05 1.8E-09 69.1 13.9 90 7-100 32-122 (172)
162 PF13432 TPR_16: Tetratricopep 98.1 1.7E-05 3.8E-10 59.4 7.4 60 52-114 2-61 (65)
163 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.7E-05 2.1E-09 76.6 15.1 126 11-147 170-295 (395)
164 KOG1130 Predicted G-alpha GTPa 98.1 0.00012 2.7E-09 72.1 14.8 83 354-437 26-118 (639)
165 PF13525 YfiO: Outer membrane 98.1 0.00093 2E-08 63.8 20.8 68 47-114 5-72 (203)
166 COG4700 Uncharacterized protei 98.0 0.0011 2.4E-08 58.1 18.2 134 687-824 85-221 (251)
167 PF13414 TPR_11: TPR repeat; P 98.0 2.7E-05 5.9E-10 59.2 7.2 66 46-114 2-68 (69)
168 PF12688 TPR_5: Tetratrico pep 98.0 0.00028 6.1E-09 59.4 13.6 95 51-147 5-102 (120)
169 PF14938 SNAP: Soluble NSF att 98.0 0.0025 5.5E-08 64.7 23.3 136 660-798 118-272 (282)
170 COG4235 Cytochrome c biogenesi 98.0 0.00033 7.1E-09 67.6 15.5 101 117-239 153-256 (287)
171 COG4235 Cytochrome c biogenesi 98.0 0.00028 6.1E-09 68.0 15.0 116 28-150 139-257 (287)
172 KOG2041 WD40 repeat protein [G 98.0 0.018 3.8E-07 61.5 28.9 215 117-371 689-904 (1189)
173 cd00189 TPR Tetratricopeptide 98.0 8.7E-05 1.9E-09 61.4 10.6 97 12-114 2-98 (100)
174 PF13525 YfiO: Outer membrane 97.9 0.00064 1.4E-08 64.9 17.2 165 10-195 5-198 (203)
175 PF13414 TPR_11: TPR repeat; P 97.9 3.7E-05 8E-10 58.5 6.8 65 83-149 2-67 (69)
176 CHL00033 ycf3 photosystem I as 97.9 0.00024 5.2E-09 65.8 13.4 98 9-110 34-139 (168)
177 PF14938 SNAP: Soluble NSF att 97.9 0.00053 1.1E-08 69.6 16.5 154 706-867 89-263 (282)
178 PRK10153 DNA-binding transcrip 97.9 0.00099 2.2E-08 72.9 19.4 143 652-800 333-490 (517)
179 PRK10153 DNA-binding transcrip 97.8 0.001 2.3E-08 72.7 18.7 63 175-239 420-482 (517)
180 PRK10803 tol-pal system protei 97.8 0.00033 7.1E-09 68.9 13.3 101 50-150 146-247 (263)
181 PRK10803 tol-pal system protei 97.8 0.0004 8.6E-09 68.4 13.8 103 12-114 144-247 (263)
182 PF07079 DUF1347: Protein of u 97.8 0.055 1.2E-06 55.2 42.8 149 126-293 12-180 (549)
183 PF14559 TPR_19: Tetratricopep 97.8 5E-05 1.1E-09 57.6 5.6 54 58-114 2-55 (68)
184 KOG2041 WD40 repeat protein [G 97.8 0.083 1.8E-06 56.7 30.7 135 361-510 679-822 (1189)
185 PF12688 TPR_5: Tetratrico pep 97.8 0.0012 2.6E-08 55.6 13.7 113 12-131 3-117 (120)
186 PRK15331 chaperone protein Sic 97.7 0.00079 1.7E-08 58.9 12.6 96 49-149 39-134 (165)
187 COG4105 ComL DNA uptake lipopr 97.7 0.025 5.3E-07 53.7 23.1 74 48-121 35-108 (254)
188 COG1729 Uncharacterized protei 97.7 0.0018 3.9E-08 61.8 15.1 101 12-114 144-245 (262)
189 KOG0543 FKBP-type peptidyl-pro 97.6 0.00072 1.6E-08 67.8 12.5 127 17-149 215-355 (397)
190 PF13432 TPR_16: Tetratricopep 97.6 0.00017 3.6E-09 54.0 6.4 60 89-150 2-61 (65)
191 PF14559 TPR_19: Tetratricopep 97.6 0.00021 4.6E-09 54.1 6.9 65 22-91 2-66 (68)
192 COG1729 Uncharacterized protei 97.6 0.0011 2.5E-08 63.1 12.6 100 51-150 145-245 (262)
193 COG3898 Uncharacterized membra 97.6 0.1 2.3E-06 52.1 32.1 207 9-243 81-296 (531)
194 PF13371 TPR_9: Tetratricopept 97.6 0.00025 5.4E-09 54.7 6.8 58 54-114 2-59 (73)
195 PF13512 TPR_18: Tetratricopep 97.6 0.0025 5.3E-08 54.6 12.8 62 53-114 16-77 (142)
196 PF13512 TPR_18: Tetratricopep 97.5 0.0029 6.3E-08 54.1 12.9 102 11-113 11-128 (142)
197 TIGR00756 PPR pentatricopeptid 97.5 0.0002 4.3E-09 45.4 4.3 33 763-795 2-34 (35)
198 TIGR00756 PPR pentatricopeptid 97.5 0.00026 5.5E-09 44.9 4.5 33 177-209 2-34 (35)
199 PF05843 Suf: Suppressor of fo 97.4 0.0035 7.6E-08 63.3 14.8 135 657-796 2-140 (280)
200 PF13812 PPR_3: Pentatricopept 97.4 0.00024 5.2E-09 44.6 4.1 33 176-208 2-34 (34)
201 PRK15331 chaperone protein Sic 97.4 0.0032 6.9E-08 55.2 12.0 94 13-112 40-133 (165)
202 COG3898 Uncharacterized membra 97.4 0.17 3.8E-06 50.6 30.9 294 392-795 96-397 (531)
203 KOG4555 TPR repeat-containing 97.4 0.0044 9.5E-08 50.8 11.4 98 50-150 46-145 (175)
204 PF05843 Suf: Suppressor of fo 97.4 0.004 8.6E-08 62.8 14.2 131 49-203 3-135 (280)
205 PF13812 PPR_3: Pentatricopept 97.3 0.00037 8.1E-09 43.8 4.2 31 658-688 3-33 (34)
206 KOG1538 Uncharacterized conser 97.3 0.1 2.3E-06 55.4 23.7 107 634-755 729-846 (1081)
207 PRK11906 transcriptional regul 97.3 0.012 2.6E-07 61.0 16.6 120 26-150 273-402 (458)
208 KOG2796 Uncharacterized conser 97.3 0.079 1.7E-06 49.8 19.9 137 622-761 178-319 (366)
209 KOG0543 FKBP-type peptidyl-pro 97.2 0.0041 9E-08 62.5 12.3 131 51-204 212-355 (397)
210 KOG2796 Uncharacterized conser 97.2 0.1 2.2E-06 49.1 20.1 139 85-240 178-316 (366)
211 COG4105 ComL DNA uptake lipopr 97.2 0.2 4.4E-06 47.8 22.5 84 12-96 36-120 (254)
212 PF07079 DUF1347: Protein of u 97.2 0.35 7.5E-06 49.7 45.9 153 56-222 15-179 (549)
213 COG4785 NlpI Lipoprotein NlpI, 97.2 0.028 6.1E-07 51.0 15.6 165 44-240 96-267 (297)
214 PF13371 TPR_9: Tetratricopept 97.2 0.0016 3.5E-08 50.1 7.2 54 769-824 3-57 (73)
215 COG4785 NlpI Lipoprotein NlpI, 97.2 0.19 4.1E-06 45.9 20.4 186 56-275 74-267 (297)
216 KOG1585 Protein required for f 97.1 0.045 9.8E-07 50.8 16.5 140 4-146 25-176 (308)
217 PF13424 TPR_12: Tetratricopep 97.1 0.00075 1.6E-08 52.8 4.8 68 81-148 2-74 (78)
218 PF10037 MRP-S27: Mitochondria 97.1 0.0061 1.3E-07 63.8 12.2 122 172-293 63-186 (429)
219 KOG1941 Acetylcholine receptor 97.1 0.12 2.6E-06 51.1 19.5 200 625-824 126-359 (518)
220 PF13424 TPR_12: Tetratricopep 97.0 0.0016 3.5E-08 50.9 5.9 66 47-112 5-74 (78)
221 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.49 1.1E-05 48.5 38.7 137 621-763 397-537 (660)
222 PF10037 MRP-S27: Mitochondria 97.0 0.012 2.6E-07 61.6 13.6 111 654-764 64-176 (429)
223 COG0457 NrfG FOG: TPR repeat [ 97.0 0.45 9.7E-06 47.5 26.3 226 25-274 37-265 (291)
224 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0073 1.6E-07 62.5 11.2 65 46-113 74-141 (453)
225 PF08579 RPM2: Mitochondrial r 97.0 0.013 2.8E-07 47.2 10.1 68 224-291 39-115 (120)
226 PF01535 PPR: PPR repeat; Int 96.9 0.0011 2.3E-08 40.5 3.4 26 659-684 3-28 (31)
227 COG0457 NrfG FOG: TPR repeat [ 96.9 0.51 1.1E-05 47.0 28.5 200 621-825 59-265 (291)
228 PF01535 PPR: PPR repeat; Int 96.9 0.0012 2.6E-08 40.3 3.4 29 177-205 2-30 (31)
229 PF08579 RPM2: Mitochondrial r 96.9 0.016 3.5E-07 46.8 10.3 80 178-257 28-116 (120)
230 KOG1585 Protein required for f 96.9 0.1 2.2E-06 48.6 16.7 28 554-581 32-59 (308)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0052 1.1E-07 63.5 9.0 67 81-149 72-141 (453)
232 PRK11906 transcriptional regul 96.8 0.075 1.6E-06 55.4 17.0 146 62-235 273-432 (458)
233 KOG1538 Uncharacterized conser 96.8 0.051 1.1E-06 57.7 15.4 53 249-304 602-656 (1081)
234 KOG1941 Acetylcholine receptor 96.7 0.038 8.2E-07 54.4 13.3 231 631-867 16-272 (518)
235 PF13281 DUF4071: Domain of un 96.7 0.36 7.8E-06 49.7 20.9 167 621-789 141-333 (374)
236 COG3118 Thioredoxin domain-con 96.7 0.25 5.4E-06 48.0 18.3 149 49-227 136-289 (304)
237 PF13281 DUF4071: Domain of un 96.7 0.4 8.7E-06 49.4 21.0 166 657-824 142-333 (374)
238 PF03704 BTAD: Bacterial trans 96.7 0.048 1E-06 49.0 13.3 69 728-798 64-138 (146)
239 KOG4234 TPR repeat-containing 96.6 0.027 5.8E-07 50.5 10.6 90 22-114 106-198 (271)
240 KOG1258 mRNA processing protei 96.6 1.3 2.9E-05 47.6 34.7 188 618-810 294-489 (577)
241 PF13428 TPR_14: Tetratricopep 96.6 0.0056 1.2E-07 41.0 4.9 41 85-127 2-42 (44)
242 KOG4555 TPR repeat-containing 96.6 0.061 1.3E-06 44.4 11.3 91 22-114 54-145 (175)
243 PF13428 TPR_14: Tetratricopep 96.5 0.0059 1.3E-07 40.9 4.6 42 48-92 2-43 (44)
244 KOG1920 IkappaB kinase complex 96.5 1.2 2.7E-05 51.8 24.8 154 635-823 894-1053(1265)
245 KOG2280 Vacuolar assembly/sort 96.5 1.9 4.2E-05 47.5 32.0 112 692-822 685-796 (829)
246 KOG2610 Uncharacterized conser 96.4 0.1 2.2E-06 50.9 13.7 152 668-823 115-274 (491)
247 PF06239 ECSIT: Evolutionarily 96.4 0.099 2.1E-06 48.3 12.8 50 172-221 44-98 (228)
248 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.5 3.3E-05 45.1 40.0 135 657-796 398-535 (660)
249 PF10300 DUF3808: Protein of u 96.3 0.16 3.4E-06 55.6 16.9 166 13-203 191-375 (468)
250 PF03704 BTAD: Bacterial trans 96.2 0.047 1E-06 49.1 10.2 62 85-148 63-124 (146)
251 PF07719 TPR_2: Tetratricopept 96.2 0.0061 1.3E-07 38.1 3.2 31 934-964 4-34 (34)
252 KOG2280 Vacuolar assembly/sort 96.2 2.8 6.1E-05 46.4 29.6 115 723-866 681-795 (829)
253 KOG2114 Vacuolar assembly/sort 96.1 3 6.6E-05 46.8 24.6 176 179-372 338-517 (933)
254 PF08631 SPO22: Meiosis protei 96.1 1.8 4E-05 43.8 24.8 126 22-149 4-150 (278)
255 PF06239 ECSIT: Evolutionarily 96.1 0.07 1.5E-06 49.2 10.5 87 208-294 45-152 (228)
256 PF10300 DUF3808: Protein of u 96.1 0.27 5.9E-06 53.7 17.3 162 660-824 192-375 (468)
257 KOG2471 TPR repeat-containing 96.0 1.3 2.9E-05 46.0 20.0 110 628-739 247-382 (696)
258 KOG1258 mRNA processing protei 96.0 3 6.5E-05 45.1 36.6 353 49-434 47-420 (577)
259 KOG2610 Uncharacterized conser 96.0 0.19 4.1E-06 49.2 13.3 154 52-237 108-274 (491)
260 PF13431 TPR_17: Tetratricopep 95.9 0.0071 1.5E-07 37.5 2.5 32 70-104 2-33 (34)
261 KOG4648 Uncharacterized conser 95.9 0.037 8.1E-07 53.9 8.3 94 51-149 101-194 (536)
262 PF00515 TPR_1: Tetratricopept 95.9 0.0076 1.6E-07 37.6 2.6 32 933-964 3-34 (34)
263 PF04840 Vps16_C: Vps16, C-ter 95.8 2.6 5.7E-05 43.2 29.3 109 728-866 179-287 (319)
264 PF04053 Coatomer_WDAD: Coatom 95.7 0.29 6.3E-06 52.6 14.8 158 55-271 269-428 (443)
265 COG3118 Thioredoxin domain-con 95.6 1.4 3.1E-05 43.0 17.4 147 667-817 145-293 (304)
266 PF06552 TOM20_plant: Plant sp 95.6 0.11 2.3E-06 46.4 9.2 110 63-205 7-137 (186)
267 COG4649 Uncharacterized protei 95.6 0.45 9.8E-06 41.9 12.6 121 494-647 68-193 (221)
268 PF08631 SPO22: Meiosis protei 95.4 3.6 7.7E-05 41.7 25.0 166 57-245 3-192 (278)
269 PF04184 ST7: ST7 protein; In 95.4 2 4.3E-05 45.4 18.7 75 178-252 262-338 (539)
270 COG2976 Uncharacterized protei 95.3 0.41 8.9E-06 43.4 11.9 133 10-150 54-189 (207)
271 COG2976 Uncharacterized protei 95.2 0.16 3.5E-06 45.8 9.1 94 16-114 95-189 (207)
272 PF06552 TOM20_plant: Plant sp 95.2 0.18 3.8E-06 45.1 9.3 110 27-150 7-137 (186)
273 PF04053 Coatomer_WDAD: Coatom 95.0 0.96 2.1E-05 48.7 16.3 99 632-751 329-427 (443)
274 PF13174 TPR_6: Tetratricopept 95.0 0.028 6.1E-07 34.7 3.0 31 934-964 3-33 (33)
275 KOG4648 Uncharacterized conser 95.0 0.1 2.2E-06 51.0 7.9 92 17-114 104-195 (536)
276 PF13431 TPR_17: Tetratricopep 95.0 0.029 6.2E-07 34.8 2.9 34 106-141 1-34 (34)
277 PF04184 ST7: ST7 protein; In 94.9 2.2 4.8E-05 45.0 17.6 57 730-787 263-321 (539)
278 KOG1550 Extracellular protein 94.9 7.1 0.00015 44.1 23.5 176 636-825 227-426 (552)
279 KOG4234 TPR repeat-containing 94.8 0.29 6.3E-06 44.1 9.6 99 51-151 99-199 (271)
280 PF13181 TPR_8: Tetratricopept 94.7 0.034 7.3E-07 34.6 2.8 31 934-964 4-34 (34)
281 KOG1464 COP9 signalosome, subu 94.6 4.4 9.4E-05 38.7 17.7 194 634-827 40-262 (440)
282 KOG4642 Chaperone-dependent E3 94.6 0.66 1.4E-05 43.4 11.6 126 55-201 18-143 (284)
283 PF04840 Vps16_C: Vps16, C-ter 94.6 6.3 0.00014 40.5 29.3 106 283-404 180-286 (319)
284 KOG2114 Vacuolar assembly/sort 94.6 10 0.00022 42.9 28.4 181 87-309 337-519 (933)
285 COG4649 Uncharacterized protei 94.6 3.2 6.9E-05 36.9 16.4 137 8-149 57-196 (221)
286 PF07719 TPR_2: Tetratricopept 94.3 0.11 2.3E-06 32.3 4.4 30 85-114 2-31 (34)
287 PF10602 RPN7: 26S proteasome 94.3 0.72 1.6E-05 42.6 11.6 102 47-148 36-141 (177)
288 PF13176 TPR_7: Tetratricopept 94.2 0.053 1.1E-06 34.3 2.8 28 935-962 3-30 (36)
289 PF00515 TPR_1: Tetratricopept 94.2 0.087 1.9E-06 32.7 3.7 30 85-114 2-31 (34)
290 PF13176 TPR_7: Tetratricopept 94.1 0.094 2E-06 33.1 3.8 26 86-111 1-26 (36)
291 smart00299 CLH Clathrin heavy 94.1 2.5 5.4E-05 37.5 14.5 84 52-146 12-95 (140)
292 PF10602 RPN7: 26S proteasome 94.0 0.71 1.5E-05 42.6 10.9 101 726-826 36-143 (177)
293 KOG2066 Vacuolar assembly/sort 93.9 13 0.00029 41.6 25.9 102 182-292 363-467 (846)
294 PF13170 DUF4003: Protein of u 93.7 9 0.00019 38.9 19.9 150 672-823 78-244 (297)
295 PRK11619 lytic murein transgly 93.6 17 0.00037 41.7 41.2 326 56-441 42-373 (644)
296 COG3629 DnrI DNA-binding trans 93.3 0.83 1.8E-05 45.0 10.4 83 85-184 154-236 (280)
297 KOG4642 Chaperone-dependent E3 93.2 1.7 3.6E-05 40.9 11.5 119 22-145 21-142 (284)
298 PF09205 DUF1955: Domain of un 93.2 2 4.2E-05 36.2 10.6 84 188-277 69-152 (161)
299 COG0790 FOG: TPR repeat, SEL1 93.1 12 0.00026 38.4 21.8 149 23-205 53-221 (292)
300 KOG2062 26S proteasome regulat 93.0 18 0.00039 40.4 33.9 64 619-684 569-634 (929)
301 KOG2396 HAT (Half-A-TPR) repea 93.0 14 0.00031 39.2 39.4 404 29-456 89-537 (568)
302 PF12921 ATP13: Mitochondrial 92.7 1.5 3.3E-05 37.6 10.0 76 657-732 3-94 (126)
303 KOG2062 26S proteasome regulat 92.6 20 0.00044 40.0 34.3 121 664-788 509-633 (929)
304 smart00299 CLH Clathrin heavy 92.6 6.5 0.00014 34.8 14.8 84 180-271 12-95 (140)
305 PF12921 ATP13: Mitochondrial 92.5 1.9 4.2E-05 36.9 10.4 96 120-220 2-98 (126)
306 KOG4507 Uncharacterized conser 92.5 0.39 8.4E-06 50.8 7.2 109 17-131 613-721 (886)
307 PF02259 FAT: FAT domain; Int 92.4 17 0.00037 38.6 23.1 66 173-238 144-212 (352)
308 KOG1550 Extracellular protein 92.3 23 0.00051 40.0 26.4 182 63-277 228-429 (552)
309 COG2909 MalT ATP-dependent tra 92.2 26 0.00057 40.3 37.2 300 558-866 352-684 (894)
310 PF10345 Cohesin_load: Cohesin 92.1 27 0.00059 40.2 44.8 201 45-273 28-253 (608)
311 PRK15180 Vi polysaccharide bio 92.0 18 0.00039 37.9 29.5 123 22-151 300-422 (831)
312 COG3629 DnrI DNA-binding trans 91.8 2 4.2E-05 42.5 10.9 79 380-458 153-236 (280)
313 PF13170 DUF4003: Protein of u 91.7 17 0.00036 37.0 17.9 131 637-769 78-225 (297)
314 PRK09687 putative lyase; Provi 91.4 17 0.00037 36.6 27.1 217 620-869 36-262 (280)
315 PF09613 HrpB1_HrpK: Bacterial 91.2 7.5 0.00016 34.6 12.6 50 59-111 22-71 (160)
316 PF08424 NRDE-2: NRDE-2, neces 91.1 21 0.00045 37.1 18.9 81 63-148 47-130 (321)
317 PF14561 TPR_20: Tetratricopep 91.1 2.2 4.9E-05 33.9 8.7 69 67-138 8-76 (90)
318 KOG0376 Serine-threonine phosp 91.0 0.51 1.1E-05 49.2 6.2 93 52-149 9-101 (476)
319 PF09613 HrpB1_HrpK: Bacterial 91.0 11 0.00024 33.6 13.8 72 356-429 21-93 (160)
320 PF08424 NRDE-2: NRDE-2, neces 91.0 17 0.00037 37.7 17.5 108 70-203 8-130 (321)
321 KOG0545 Aryl-hydrocarbon recep 90.8 6.6 0.00014 37.2 12.4 100 11-114 179-294 (329)
322 KOG0276 Vesicle coat complex C 90.8 2.1 4.6E-05 45.9 10.5 152 57-271 596-747 (794)
323 PF04097 Nic96: Nup93/Nic96; 90.6 35 0.00077 39.2 21.1 47 245-293 112-158 (613)
324 COG2909 MalT ATP-dependent tra 90.2 41 0.00089 38.9 30.7 57 315-371 623-685 (894)
325 PF14853 Fis1_TPR_C: Fis1 C-te 90.2 0.33 7.2E-06 33.7 2.8 30 935-964 5-34 (53)
326 PF13181 TPR_8: Tetratricopept 89.8 0.58 1.3E-05 28.9 3.6 30 85-114 2-31 (34)
327 PF13174 TPR_6: Tetratricopept 89.5 0.61 1.3E-05 28.5 3.6 28 86-113 2-29 (33)
328 KOG3941 Intermediate in Toll s 89.3 3.2 6.9E-05 40.0 9.4 104 173-295 65-173 (406)
329 KOG1308 Hsp70-interacting prot 89.0 0.32 7E-06 48.1 2.9 91 56-151 123-213 (377)
330 KOG2471 TPR repeat-containing 88.9 2.3 5E-05 44.4 8.8 141 22-187 217-381 (696)
331 PF07035 Mic1: Colon cancer-as 88.9 18 0.00038 32.8 14.5 101 195-305 14-114 (167)
332 PF09205 DUF1955: Domain of un 88.7 14 0.0003 31.4 15.1 62 625-687 90-151 (161)
333 smart00028 TPR Tetratricopepti 88.7 0.59 1.3E-05 28.1 3.2 31 934-964 4-34 (34)
334 PF11207 DUF2989: Protein of u 88.1 6 0.00013 36.7 10.1 77 62-141 121-199 (203)
335 COG1747 Uncharacterized N-term 88.1 41 0.00088 36.0 24.2 199 617-824 62-287 (711)
336 PF13374 TPR_10: Tetratricopep 87.3 1.2 2.6E-05 29.1 4.1 29 797-825 3-31 (42)
337 KOG0376 Serine-threonine phosp 87.3 0.97 2.1E-05 47.2 5.1 103 17-128 11-113 (476)
338 KOG3941 Intermediate in Toll s 87.1 5.2 0.00011 38.7 9.3 77 165-260 97-173 (406)
339 KOG1308 Hsp70-interacting prot 86.8 0.41 8.8E-06 47.4 2.1 96 22-123 125-220 (377)
340 PRK10941 hypothetical protein; 86.6 7.4 0.00016 38.7 10.7 62 50-114 184-245 (269)
341 PF13374 TPR_10: Tetratricopep 86.2 1.5 3.3E-05 28.6 4.1 28 85-112 3-30 (42)
342 PRK09687 putative lyase; Provi 86.1 41 0.00089 34.0 29.3 17 244-260 205-221 (280)
343 PF09986 DUF2225: Uncharacteri 86.0 7.6 0.00016 37.2 10.1 102 773-874 89-198 (214)
344 KOG2066 Vacuolar assembly/sort 85.9 69 0.0015 36.4 26.8 76 57-138 366-441 (846)
345 PF10345 Cohesin_load: Cohesin 85.7 76 0.0016 36.7 43.1 190 30-237 40-252 (608)
346 PF02259 FAT: FAT domain; Int 85.4 54 0.0012 34.7 26.0 32 394-425 272-303 (352)
347 TIGR02561 HrpB1_HrpK type III 85.4 25 0.00054 30.8 12.8 51 393-443 23-73 (153)
348 TIGR02561 HrpB1_HrpK type III 84.8 27 0.00057 30.7 13.3 50 97-148 23-72 (153)
349 KOG1586 Protein required for f 84.4 38 0.00083 32.2 19.7 23 491-513 161-183 (288)
350 PF11207 DUF2989: Protein of u 84.2 12 0.00026 34.8 9.9 74 672-746 122-198 (203)
351 PF14853 Fis1_TPR_C: Fis1 C-te 84.1 2.4 5.2E-05 29.5 4.3 26 799-824 4-29 (53)
352 KOG0545 Aryl-hydrocarbon recep 84.0 10 0.00022 36.0 9.4 99 48-150 179-294 (329)
353 KOG0890 Protein kinase of the 83.7 1.6E+02 0.0034 38.7 39.0 123 315-443 1388-1512(2382)
354 PF09986 DUF2225: Uncharacteri 83.6 9.2 0.0002 36.6 9.5 65 763-827 120-196 (214)
355 COG0790 FOG: TPR repeat, SEL1 83.4 57 0.0012 33.4 24.2 115 636-756 92-221 (292)
356 KOG4507 Uncharacterized conser 83.0 78 0.0017 34.6 22.2 101 11-114 213-313 (886)
357 KOG3364 Membrane protein invol 82.8 14 0.00031 31.5 8.9 66 758-824 29-99 (149)
358 PF07721 TPR_4: Tetratricopept 82.5 1.8 3.8E-05 24.8 2.7 21 87-107 4-24 (26)
359 KOG0276 Vesicle coat complex C 82.2 18 0.00039 39.3 11.5 46 667-718 648-693 (794)
360 PF07720 TPR_3: Tetratricopept 82.2 1.9 4.2E-05 27.1 2.9 31 934-964 4-36 (36)
361 KOG0890 Protein kinase of the 81.9 1.8E+02 0.004 38.2 38.1 152 89-269 1388-1542(2382)
362 KOG1920 IkappaB kinase complex 81.9 1.3E+02 0.0028 36.4 27.2 109 382-509 941-1051(1265)
363 PF12968 DUF3856: Domain of Un 81.3 25 0.00054 29.2 9.4 62 12-73 9-81 (144)
364 cd00923 Cyt_c_Oxidase_Va Cytoc 80.9 11 0.00025 29.9 7.2 48 362-409 24-71 (103)
365 KOG2396 HAT (Half-A-TPR) repea 80.8 87 0.0019 33.7 39.8 76 172-249 102-178 (568)
366 KOG0551 Hsp90 co-chaperone CNS 80.8 10 0.00022 37.9 8.5 96 50-147 84-180 (390)
367 KOG3364 Membrane protein invol 80.6 14 0.0003 31.6 8.1 68 793-871 29-101 (149)
368 PF07721 TPR_4: Tetratricopept 80.3 2.6 5.5E-05 24.1 2.8 22 799-820 4-25 (26)
369 COG5187 RPN7 26S proteasome re 79.8 43 0.00093 32.9 12.1 97 691-787 115-218 (412)
370 PRK10941 hypothetical protein; 79.5 12 0.00026 37.2 9.0 77 764-851 184-261 (269)
371 smart00028 TPR Tetratricopepti 78.9 3.5 7.6E-05 24.3 3.6 28 86-113 3-30 (34)
372 KOG2300 Uncharacterized conser 78.7 98 0.0021 33.1 35.7 96 12-107 48-150 (629)
373 PF12862 Apc5: Anaphase-promot 78.7 9.1 0.0002 30.9 6.7 29 85-113 42-70 (94)
374 PRK13184 pknD serine/threonine 78.5 1.6E+02 0.0035 35.5 28.7 58 384-441 808-867 (932)
375 PRK11619 lytic murein transgly 78.3 1.4E+02 0.003 34.6 42.3 50 699-751 415-464 (644)
376 PF14561 TPR_20: Tetratricopep 77.9 34 0.00073 27.3 10.0 75 31-108 8-82 (90)
377 TIGR03504 FimV_Cterm FimV C-te 77.6 2.9 6.4E-05 27.7 2.8 27 934-960 2-28 (44)
378 COG1747 Uncharacterized N-term 77.4 1.1E+02 0.0024 33.0 22.5 186 44-255 63-249 (711)
379 PF02284 COX5A: Cytochrome c o 77.1 18 0.00038 29.2 7.3 59 363-421 28-86 (108)
380 KOG0530 Protein farnesyltransf 77.0 76 0.0016 30.9 21.6 130 16-151 48-178 (318)
381 PF10579 Rapsyn_N: Rapsyn N-te 76.4 7.5 0.00016 29.5 4.9 48 59-106 18-65 (80)
382 KOG0687 26S proteasome regulat 76.2 91 0.002 31.4 15.1 64 693-756 106-174 (393)
383 KOG4570 Uncharacterized conser 75.5 17 0.00037 36.0 8.3 103 685-791 58-165 (418)
384 KOG1464 COP9 signalosome, subu 74.9 86 0.0019 30.5 21.7 162 97-273 40-219 (440)
385 PF07035 Mic1: Colon cancer-as 74.7 67 0.0015 29.2 15.5 101 642-752 15-115 (167)
386 PF12862 Apc5: Anaphase-promot 74.6 21 0.00046 28.7 7.8 53 772-824 9-69 (94)
387 COG3947 Response regulator con 74.6 20 0.00044 35.2 8.5 61 86-148 281-341 (361)
388 PF12968 DUF3856: Domain of Un 74.4 50 0.0011 27.6 12.2 95 54-148 16-128 (144)
389 KOG4570 Uncharacterized conser 73.7 21 0.00045 35.4 8.4 104 169-274 58-164 (418)
390 KOG2063 Vacuolar assembly/sort 72.8 2.1E+02 0.0045 34.0 17.5 115 178-292 507-638 (877)
391 COG4455 ImpE Protein of avirul 72.0 24 0.00053 33.0 8.0 54 22-77 12-65 (273)
392 cd00923 Cyt_c_Oxidase_Va Cytoc 71.3 37 0.0008 27.1 7.7 62 190-252 22-83 (103)
393 PF04097 Nic96: Nup93/Nic96; 70.2 2.1E+02 0.0046 33.0 26.4 62 87-150 114-182 (613)
394 PF10579 Rapsyn_N: Rapsyn N-te 69.0 12 0.00027 28.4 4.6 49 773-821 18-68 (80)
395 KOG0686 COP9 signalosome, subu 67.8 1.6E+02 0.0036 30.8 14.1 99 47-147 150-256 (466)
396 PF04781 DUF627: Protein of un 67.4 50 0.0011 27.3 8.1 22 22-43 7-28 (111)
397 COG4455 ImpE Protein of avirul 67.3 37 0.0008 31.9 8.1 55 55-112 9-63 (273)
398 COG3947 Response regulator con 67.1 23 0.00051 34.7 7.2 60 50-112 282-341 (361)
399 PF00244 14-3-3: 14-3-3 protei 67.1 37 0.0008 33.2 9.0 51 812-869 142-197 (236)
400 KOG0551 Hsp90 co-chaperone CNS 66.4 36 0.00077 34.3 8.4 84 24-110 94-179 (390)
401 PF04781 DUF627: Protein of un 66.1 55 0.0012 27.1 8.1 92 54-147 3-105 (111)
402 PF00637 Clathrin: Region in C 66.0 2.3 5.1E-05 37.8 0.5 84 627-717 13-96 (143)
403 TIGR03504 FimV_Cterm FimV C-te 66.0 14 0.00031 24.5 4.0 24 251-274 5-28 (44)
404 PF00637 Clathrin: Region in C 65.5 3.1 6.7E-05 37.0 1.2 45 703-747 19-63 (143)
405 COG4976 Predicted methyltransf 65.4 3.9 8.4E-05 38.2 1.7 58 906-964 5-62 (287)
406 PF02284 COX5A: Cytochrome c o 64.8 75 0.0016 25.8 9.1 62 191-253 26-87 (108)
407 KOG3824 Huntingtin interacting 63.9 26 0.00055 34.6 6.8 65 54-123 123-187 (472)
408 KOG2300 Uncharacterized conser 63.7 2.2E+02 0.0047 30.7 41.8 99 49-149 9-118 (629)
409 COG4976 Predicted methyltransf 63.6 17 0.00037 34.2 5.4 56 56-114 4-59 (287)
410 TIGR02508 type_III_yscG type I 63.4 73 0.0016 25.7 7.9 47 736-788 49-95 (115)
411 PF10255 Paf67: RNA polymerase 62.6 39 0.00085 35.8 8.6 58 730-787 126-190 (404)
412 PF04190 DUF410: Protein of un 62.3 1.7E+02 0.0038 29.2 16.3 20 185-204 151-170 (260)
413 PF07163 Pex26: Pex26 protein; 61.9 94 0.002 30.7 10.1 85 663-749 90-181 (309)
414 KOG4814 Uncharacterized conser 61.5 56 0.0012 36.1 9.4 91 57-149 364-457 (872)
415 PF13934 ELYS: Nuclear pore co 60.8 57 0.0012 31.7 8.9 88 13-111 79-167 (226)
416 KOG1586 Protein required for f 59.5 1.7E+02 0.0037 28.1 21.5 29 383-411 157-185 (288)
417 TIGR02508 type_III_yscG type I 59.3 93 0.002 25.2 7.8 49 701-755 49-97 (115)
418 PF04910 Tcf25: Transcriptiona 59.2 2.4E+02 0.0053 29.8 18.6 175 633-827 22-224 (360)
419 COG4941 Predicted RNA polymera 59.0 1.5E+02 0.0033 30.1 11.1 114 707-824 272-393 (415)
420 PF07163 Pex26: Pex26 protein; 57.2 1E+02 0.0023 30.4 9.5 117 24-143 48-181 (309)
421 KOG2063 Vacuolar assembly/sort 55.4 4.4E+02 0.0094 31.6 19.9 119 10-132 504-638 (877)
422 KOG4077 Cytochrome c oxidase, 55.3 78 0.0017 26.8 7.2 56 363-418 67-122 (149)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 55.0 93 0.002 26.8 8.3 43 779-821 81-124 (126)
424 KOG4521 Nuclear pore complex, 54.1 3.5E+02 0.0075 32.9 14.4 158 86-267 922-1124(1480)
425 smart00386 HAT HAT (Half-A-TPR 54.0 30 0.00065 20.4 4.0 29 394-422 1-29 (33)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 52.7 1.5E+02 0.0033 25.5 10.2 44 102-145 81-124 (126)
427 smart00386 HAT HAT (Half-A-TPR 52.6 31 0.00068 20.4 3.9 14 63-76 3-16 (33)
428 KOG0530 Protein farnesyltransf 52.4 2.4E+02 0.0052 27.7 18.8 174 55-256 51-232 (318)
429 PF09670 Cas_Cas02710: CRISPR- 51.9 2.1E+02 0.0046 30.5 12.2 52 702-754 142-197 (379)
430 PF04910 Tcf25: Transcriptiona 51.4 3.2E+02 0.007 28.9 20.9 158 81-274 37-222 (360)
431 smart00101 14_3_3 14-3-3 homol 50.8 2.6E+02 0.0055 27.6 14.6 50 812-868 144-198 (244)
432 KOG2034 Vacuolar sorting prote 49.1 5.1E+02 0.011 30.6 25.6 48 591-647 509-556 (911)
433 KOG1839 Uncharacterized protei 48.9 2.5E+02 0.0054 34.6 12.8 158 628-785 939-1123(1236)
434 KOG4279 Serine/threonine prote 48.4 1.9E+02 0.0041 32.9 10.9 113 12-134 203-334 (1226)
435 KOG1839 Uncharacterized protei 47.5 2.8E+02 0.0062 34.1 13.0 165 51-232 936-1121(1236)
436 KOG4814 Uncharacterized conser 47.5 1.2E+02 0.0025 33.8 9.0 63 86-151 357-425 (872)
437 KOG2581 26S proteasome regulat 47.4 3.5E+02 0.0075 28.6 11.8 24 802-825 253-276 (493)
438 PF09670 Cas_Cas02710: CRISPR- 47.4 2.2E+02 0.0047 30.5 11.4 58 731-789 136-197 (379)
439 PRK12798 chemotaxis protein; R 46.9 3.9E+02 0.0084 28.5 22.1 197 222-452 124-333 (421)
440 COG5191 Uncharacterized conser 46.7 49 0.0011 32.9 5.7 79 44-127 104-183 (435)
441 PF00244 14-3-3: 14-3-3 protei 46.6 2.9E+02 0.0064 27.1 14.3 59 626-684 6-65 (236)
442 KOG4279 Serine/threonine prote 46.2 3.3E+02 0.0072 31.1 12.3 197 673-878 180-401 (1226)
443 PF11817 Foie-gras_1: Foie gra 46.0 83 0.0018 31.2 7.6 64 83-146 177-244 (247)
444 COG4941 Predicted RNA polymera 45.4 3.6E+02 0.0077 27.7 11.7 119 25-149 270-394 (415)
445 PF10255 Paf67: RNA polymerase 45.3 72 0.0016 33.9 7.2 63 49-111 124-191 (404)
446 KOG2422 Uncharacterized conser 45.2 4.8E+02 0.01 29.1 19.3 170 97-274 251-448 (665)
447 PF04090 RNA_pol_I_TF: RNA pol 45.1 2.7E+02 0.0059 26.2 10.3 62 12-75 43-104 (199)
448 COG2912 Uncharacterized conser 45.0 1.1E+02 0.0025 30.1 8.0 59 52-113 186-244 (269)
449 KOG4521 Nuclear pore complex, 44.5 6.8E+02 0.015 30.7 14.9 79 213-297 986-1071(1480)
450 PF10516 SHNi-TPR: SHNi-TPR; 44.3 45 0.00097 21.4 3.4 28 85-112 2-29 (38)
451 PRK15180 Vi polysaccharide bio 44.2 4.4E+02 0.0095 28.4 32.0 117 256-375 300-421 (831)
452 KOG0128 RNA-binding protein SA 42.6 6.2E+02 0.013 29.7 35.0 372 46-448 112-531 (881)
453 COG5159 RPN6 26S proteasome re 42.2 3.6E+02 0.0078 26.8 21.7 200 126-338 9-234 (421)
454 PF14689 SPOB_a: Sensor_kinase 41.1 99 0.0022 22.5 5.4 25 659-683 26-50 (62)
455 KOG3807 Predicted membrane pro 41.0 4E+02 0.0087 27.0 14.3 18 702-719 286-303 (556)
456 KOG3824 Huntingtin interacting 40.4 83 0.0018 31.2 6.2 63 22-89 127-189 (472)
457 PF14689 SPOB_a: Sensor_kinase 40.2 86 0.0019 22.8 4.9 24 249-272 27-50 (62)
458 COG5187 RPN7 26S proteasome re 39.2 4.1E+02 0.0088 26.6 16.5 98 655-754 114-220 (412)
459 KOG0292 Vesicle coat complex C 37.1 4.7E+02 0.01 30.8 11.9 178 564-789 604-781 (1202)
460 PF10516 SHNi-TPR: SHNi-TPR; 36.8 77 0.0017 20.3 3.7 27 798-824 3-29 (38)
461 PF11846 DUF3366: Domain of un 36.6 1.7E+02 0.0036 27.6 7.8 34 81-114 141-174 (193)
462 PF11846 DUF3366: Domain of un 36.6 1.4E+02 0.0031 28.1 7.4 33 792-824 140-172 (193)
463 KOG2659 LisH motif-containing 36.6 4E+02 0.0086 25.7 9.9 107 746-866 13-128 (228)
464 PF04762 IKI3: IKI3 family; I 36.2 4.3E+02 0.0094 32.3 12.7 196 489-717 699-927 (928)
465 COG0735 Fur Fe2+/Zn2+ uptake r 34.8 2.5E+02 0.0054 25.0 8.0 63 34-99 8-70 (145)
466 COG5159 RPN6 26S proteasome re 34.5 4.8E+02 0.01 26.0 22.7 22 489-510 130-151 (421)
467 PF15297 CKAP2_C: Cytoskeleton 34.5 1.8E+02 0.004 29.9 7.7 63 743-807 120-186 (353)
468 cd00280 TRFH Telomeric Repeat 33.9 3.2E+02 0.0069 25.3 8.2 23 627-649 117-139 (200)
469 PF09477 Type_III_YscG: Bacter 33.1 2.8E+02 0.0061 22.9 9.7 77 61-147 20-96 (116)
470 COG4259 Uncharacterized protei 32.5 2.3E+02 0.0049 22.9 6.2 57 63-124 53-109 (121)
471 KOG0292 Vesicle coat complex C 31.8 2.6E+02 0.0057 32.7 9.0 177 24-274 606-782 (1202)
472 KOG0991 Replication factor C, 31.7 4.9E+02 0.011 25.2 12.7 102 185-290 169-282 (333)
473 COG5191 Uncharacterized conser 31.4 1.1E+02 0.0024 30.6 5.5 81 6-92 103-184 (435)
474 KOG2582 COP9 signalosome, subu 30.9 6.4E+02 0.014 26.3 15.7 19 494-512 193-211 (422)
475 PRK13342 recombination factor 30.7 7.3E+02 0.016 27.0 18.8 37 634-670 243-279 (413)
476 PHA02537 M terminase endonucle 29.4 5.4E+02 0.012 25.0 10.8 102 701-825 93-207 (230)
477 PF11817 Foie-gras_1: Foie gra 29.1 2.7E+02 0.0059 27.5 8.2 58 382-439 180-243 (247)
478 KOG2581 26S proteasome regulat 28.5 7.4E+02 0.016 26.3 16.4 101 13-114 172-277 (493)
479 KOG0991 Replication factor C, 28.3 5.6E+02 0.012 24.9 15.4 61 736-797 202-274 (333)
480 PF13929 mRNA_stabil: mRNA sta 28.1 6.4E+02 0.014 25.5 12.5 121 174-294 163-292 (292)
481 TIGR02710 CRISPR-associated pr 27.3 7.8E+02 0.017 26.2 12.2 26 801-826 249-276 (380)
482 PRK10564 maltose regulon perip 27.2 1.3E+02 0.0029 30.2 5.4 38 247-284 259-296 (303)
483 PF02184 HAT: HAT (Half-A-TPR) 27.2 1.3E+02 0.0027 18.5 3.2 23 100-125 3-25 (32)
484 KOG1310 WD40 repeat protein [G 26.4 2.5E+02 0.0054 30.6 7.4 81 27-112 390-473 (758)
485 smart00777 Mad3_BUB1_I Mad3/BU 26.4 4.2E+02 0.0092 22.8 9.0 74 707-785 49-123 (125)
486 PF10366 Vps39_1: Vacuolar sor 25.9 3.9E+02 0.0084 22.3 7.6 27 693-719 41-67 (108)
487 PRK10564 maltose regulon perip 25.9 1.7E+02 0.0036 29.5 5.8 42 172-213 253-295 (303)
488 PF04190 DUF410: Protein of un 25.8 6.8E+02 0.015 25.0 19.7 25 244-268 89-113 (260)
489 COG3914 Spy Predicted O-linked 25.8 9.9E+02 0.021 26.9 12.0 92 57-152 77-174 (620)
490 KOG4077 Cytochrome c oxidase, 25.8 4.3E+02 0.0093 22.7 7.5 47 193-239 67-113 (149)
491 cd02682 MIT_AAA_Arch MIT: doma 25.8 70 0.0015 24.4 2.5 19 941-959 16-34 (75)
492 PF11663 Toxin_YhaV: Toxin wit 25.7 77 0.0017 27.3 3.0 29 258-288 108-136 (140)
493 cd00280 TRFH Telomeric Repeat 25.6 5.5E+02 0.012 23.9 8.7 23 386-408 117-139 (200)
494 cd02681 MIT_calpain7_1 MIT: do 25.5 84 0.0018 24.1 2.9 26 935-960 9-35 (76)
495 PF04348 LppC: LppC putative l 25.5 23 0.0005 39.7 0.0 121 25-146 2-124 (536)
496 cd08819 CARD_MDA5_2 Caspase ac 24.9 2.7E+02 0.0059 22.0 5.5 33 258-295 49-81 (88)
497 COG0735 Fur Fe2+/Zn2+ uptake r 24.9 3.4E+02 0.0075 24.1 7.2 61 234-295 10-70 (145)
498 smart00101 14_3_3 14-3-3 homol 24.6 6.9E+02 0.015 24.7 16.5 178 627-824 7-199 (244)
499 cd02680 MIT_calpain7_2 MIT: do 24.1 55 0.0012 24.9 1.7 20 941-960 16-35 (75)
500 PF11848 DUF3368: Domain of un 24.0 2.4E+02 0.0052 19.2 5.2 38 251-288 8-45 (48)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-72 Score=662.64 Aligned_cols=669 Identities=17% Similarity=0.232 Sum_probs=589.4
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
+++...++.++..+++.|++++|..+|+.+...+ ++|+..+|..++.++.+.+..+.|..++..+.+.++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------- 117 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--------- 117 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC---------
Confidence 5566778889999999999999999999988765 788888898899988888999999999988886543
Q ss_pred HHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 161 WICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
.++...+|.++..|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|
T Consensus 118 -----------~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 118 -----------SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred -----------CCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 5778888999999999999999999999985 4688899999999999999999999999999889
Q ss_pred CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCC-CCHHHHHHHHHH
Q 046930 241 LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGIL-GDVVTYSTLLHG 319 (965)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~l~~~ 319 (965)
+.||..||+.++.+|...++++.+.+++..|.+.|+.||..+++.++.+|.+.|+++.|..+|+.++ +|..+|+.++.+
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~ 262 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998874 788999999999
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHH
Q 046930 320 YIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEA 399 (965)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 399 (965)
|.+.|++++|+++|++|...|+.||..+|+.++.+|.+.|+.+.|.+++..+.+.|+.||..+++.++.+|++.|++++|
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcc
Q 046930 400 LEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLR 479 (965)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~ 479 (965)
.++|++|.. ++..+|+.++.+|.+.|++++|+++|++|.+.|+.||..++..++.+|.+.|+.+.+.+++..+.+.+
T Consensus 343 ~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 343 EKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 999999864 57889999999999999999999999999999999999999999999888888888877777777777
Q ss_pred cccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHH
Q 046930 480 SEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKF 559 (965)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (965)
...+..+++.++.+|++.|++++|.++|++|.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------------------------------------------- 452 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----------------------------------------------- 452 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------------------------------------------
Confidence 777777777777777777777777777776543
Q ss_pred HHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHH
Q 046930 560 LVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNK 639 (965)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (965)
+|..+|+.++.+|++.|+.++
T Consensus 453 -----------------------------------------------------------~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 453 -----------------------------------------------------------KDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred -----------------------------------------------------------CCeeeHHHHHHHHHHCCCHHH
Confidence 357788999999999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 046930 640 ALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVL 719 (965)
Q Consensus 640 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (965)
|+.+|++|.. +.+||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 9999999975 4888999999999999999999999999999999898899899999999999999999999988876
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH-hCCCCCChHH
Q 046930 720 KGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN-TKGVSPDFLG 798 (965)
Q Consensus 720 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~ 798 (965)
.||..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 578889999999999999999999999999988899999999999999999999999999999997 5788999989
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccc
Q 046930 799 FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFG 878 (965)
Q Consensus 799 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 878 (965)
|..++.+|++.|+++||.+++++|. ..|+...|..|+.++...|+.+.|+...+++.
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~-------------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~---------- 684 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMP-------------ITPDPAVWGALLNACRIHRHVELGELAAQHIF---------- 684 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----------
Confidence 9999999999999999999888772 46788888888888888888888887776641
Q ss_pred hhhhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHH
Q 046930 879 TDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEM 957 (965)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~ 957 (965)
+. .|+...+|.++.. |.+.|+|++|.+..+.+
T Consensus 685 ---------------------------------------------~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 685 ---------------------------------------------EL--DPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred ---------------------------------------------hh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11 4667777777766 88888898888888877
Q ss_pred hc
Q 046930 958 LS 959 (965)
Q Consensus 958 ~~ 959 (965)
-+
T Consensus 718 ~~ 719 (857)
T PLN03077 718 RE 719 (857)
T ss_pred HH
Confidence 54
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6e-72 Score=659.81 Aligned_cols=656 Identities=19% Similarity=0.271 Sum_probs=611.5
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
+.+...++.++..+ ...|++++|+.+|+. +...|.+|+..++..++..|.+.+.++.+..++..+.+.+. .++...
T Consensus 48 ~~~~~~~n~~i~~l-~~~g~~~~A~~l~~~-m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 123 (857)
T PLN03077 48 SSSTHDSNSQLRAL-CSHGQLEQALKLLES-MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--SLGVRL 123 (857)
T ss_pred ccchhhHHHHHHHH-HhCCCHHHHHHHHHH-HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC--CCCchH
Confidence 34556789999998 689999999999999 45578899999999999999999999999999999999886 678889
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh--
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG-- 164 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~-- 164 (965)
++.++..|.+.|+.+.|.++|++|. +||..+|+.++.+|++.|++++|..+|++|...|+.||.+||++++..
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 9999999999999999999999985 589999999999999999999999999999999999999999988753
Q ss_pred -------------hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046930 165 -------------QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFT 231 (965)
Q Consensus 165 -------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 231 (965)
.+.+.|+.||+.+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 67788999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC-CCCH
Q 046930 232 VFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI-LGDV 310 (965)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~ 310 (965)
+|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|.+.|++++|.++|+.+ .+|.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 4899
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHH
Q 046930 311 VTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGY 390 (965)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (965)
.+|+.++.+|.+.|++++|+++|++|.+.++.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+++.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHH
Q 046930 391 CKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLN 470 (965)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~ 470 (965)
++.|++++|.++|++|.+ ++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..++..++.+|
T Consensus 435 ~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~----------- 499 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC----------- 499 (857)
T ss_pred HHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH-----------
Confidence 999999999999999865 4778999999999999999999999999986 5899999998888875
Q ss_pred HHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcC
Q 046930 471 FVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENG 550 (965)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (965)
.+.|..+.+.+++..+.+.|..
T Consensus 500 ------------------------~~~g~l~~~~~i~~~~~~~g~~---------------------------------- 521 (857)
T PLN03077 500 ------------------------ARIGALMCGKEIHAHVLRTGIG---------------------------------- 521 (857)
T ss_pred ------------------------hhhchHHHhHHHHHHHHHhCCC----------------------------------
Confidence 5667788888888888776643
Q ss_pred CCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHH
Q 046930 551 LVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAA 630 (965)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (965)
.|...+++++.+
T Consensus 522 --------------------------------------------------------------------~~~~~~naLi~~ 533 (857)
T PLN03077 522 --------------------------------------------------------------------FDGFLPNALLDL 533 (857)
T ss_pred --------------------------------------------------------------------ccceechHHHHH
Confidence 357788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHH
Q 046930 631 LCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDA 710 (965)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 710 (965)
|++.|++++|..+|+.+ .+|..+|++++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|
T Consensus 534 y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 99999999999999987 4699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 711 KKLFDRMV-LKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 711 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+.+|..+|+.+.+....+++.+
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 99999999 56999999999999999999999999999999995 699999999999999999999999999999865
Q ss_pred CCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 790 KGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 790 ~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
+.|+... |..|.+.|...|+|++|.++.+.|.+.+
T Consensus 686 --l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 686 --LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred --hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 7887766 7778899999999999999999999864
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.4e-59 Score=534.66 Aligned_cols=542 Identities=20% Similarity=0.265 Sum_probs=326.3
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
+.+...+..+...+++.|++++|+++|++|...+.++++...+..++.+|.+.|..++|..+|+.|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~------------- 433 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------------- 433 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------------
Confidence 3445556666677777777777777777777665445566666667777777777777777776664
Q ss_pred HHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 161 WICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+.++|.++|++|.+.|
T Consensus 434 -----------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G 502 (1060)
T PLN03218 434 -----------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502 (1060)
T ss_pred -----------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 267777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC-------CCCCHHHH
Q 046930 241 LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG-------ILGDVVTY 313 (965)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~ 313 (965)
+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++.. +.||..+|
T Consensus 503 v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 77777777777777777777777777777777777777777777777777766666666655431 23344444
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHc
Q 046930 314 STLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKL 393 (965)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (965)
+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 44444444444444444444455555555555555555555555555555555555555555455555555555555555
Q ss_pred CCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHH
Q 046930 394 GRIEEALEIFDELRRM-SISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFV 472 (965)
Q Consensus 394 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~ 472 (965)
|++++|.++|++|.+. ..++..+|+.++.+|++.|++++|.++|++|...|+.|+..+|+.++.
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~--------------- 727 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT--------------- 727 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---------------
Confidence 5555555555555444 233444555555555555555555555555544444444433333332
Q ss_pred HHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCC
Q 046930 473 YRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLV 552 (965)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (965)
.|++.|++++|.++|++|...|..
T Consensus 728 --------------------gy~k~G~~eeAlelf~eM~~~Gi~------------------------------------ 751 (1060)
T PLN03218 728 --------------------ALCEGNQLPKALEVLSEMKRLGLC------------------------------------ 751 (1060)
T ss_pred --------------------HHHHCCCHHHHHHHHHHHHHcCCC------------------------------------
Confidence 234445555555555555443322
Q ss_pred chHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 046930 553 EPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALC 632 (965)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (965)
+|..+|+.++.+|+
T Consensus 752 ------------------------------------------------------------------Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 752 ------------------------------------------------------------------PNTITYSILLVASE 765 (1060)
T ss_pred ------------------------------------------------------------------CCHHHHHHHHHHHH
Confidence 23555555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHH
Q 046930 633 REGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKK 712 (965)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 712 (965)
+.|++++|.++|++|.+.|+.||..+|+.++..|. +++++|.++.+.+...+ + .......+..++|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSWALM 833 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHHHHH
Confidence 55555555555555555555555555555543332 13344433333322210 0 000011122356777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC
Q 046930 713 LFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGV 792 (965)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 792 (965)
+|++|++.|+.||..+|+.++.+++..+..+.+..+++.|...+..|+..+|++|+.++.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 78888877778887788777777777777777777777777666677777788887776322 3578888888877777
Q ss_pred CCChH
Q 046930 793 SPDFL 797 (965)
Q Consensus 793 ~p~~~ 797 (965)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 77764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-58 Score=530.67 Aligned_cols=544 Identities=18% Similarity=0.231 Sum_probs=379.5
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046930 117 KPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVG 196 (965)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 196 (965)
.++...|..+...+++.|++++|.++|++|.+.++ +.++..+++.++..|.+.|.+++|..
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-------------------v~~~~v~~~~li~~~~~~g~~~eAl~ 427 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-------------------LDMDKIYHAKFFKACKKQRAVKEAFR 427 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-------------------CCchHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566777777788888888888888888876543 24567777788888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046930 197 ILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGI 276 (965)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 276 (965)
+|+.|.. ||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+
T Consensus 428 lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv 503 (1060)
T PLN03218 428 FAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503 (1060)
T ss_pred HHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 8888753 788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046930 277 KPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALF 356 (965)
Q Consensus 277 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (965)
.||..+|+.+|.+|++.|++++|.+ +|+.|...++.||..+|+.++.+|+
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~------------------------------lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFG------------------------------AYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHH------------------------------HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8888888888888777766665554 5556666777777777777777777
Q ss_pred hcCCHHHHHHHHHHchh--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChHHH
Q 046930 357 MVGALEDARALYQAMPE--MNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS-ISSVACYNCIINGLCKSGMVDMA 433 (965)
Q Consensus 357 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 433 (965)
+.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|++|.+.+ +++..+|+.++.+|++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 77777777777777754 4566777777777777777777777777777777764 45677777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 046930 434 TEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKR 513 (965)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 513 (965)
.++|++|.+.|+.||..+|..++.+|.+.|+.++|.+++..|.+.+......+|+.++.+|++.|++++|.++|++|...
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 77777777777777777666666654333333333333333332222222223333333344555555555555554443
Q ss_pred CCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHH
Q 046930 514 GSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVL 593 (965)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 593 (965)
|..
T Consensus 714 g~~----------------------------------------------------------------------------- 716 (1060)
T PLN03218 714 KLR----------------------------------------------------------------------------- 716 (1060)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 321
Q ss_pred HHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHH
Q 046930 594 KKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFV 673 (965)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 673 (965)
+|..+|+.|+.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++
T Consensus 717 -------------------------PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 717 -------------------------PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred -------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 2455666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 046930 674 EAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLK 753 (965)
Q Consensus 674 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 753 (965)
+|.++|.+|.+.|+.||..+|+.++..|. +++++|.++.+.+..- .+ +......+..++|..+|++|.
T Consensus 772 ~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~--------g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS--------GRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc--------cccccccchHHHHHHHHHHHH
Confidence 66666666666666666666666654433 1344444443333221 00 001111234578999999999
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcch
Q 046930 754 INCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVL 829 (965)
Q Consensus 754 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 829 (965)
+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|..|+.++.+. .++|..++++|.+.+-.+
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 99999999999999988889999999999999987677888899999999998432 468999999999876443
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-52 Score=511.99 Aligned_cols=872 Identities=11% Similarity=0.046 Sum_probs=742.0
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
+...+...+..+ ..+|+++.|+..|+++++.. |.++..+..++.++...|++++|...|+++.+.+ |++...+.
T Consensus 21 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 94 (899)
T TIGR02917 21 SPESLIEAAKSY-LQKNKYKAAIIQLKNALQKD--PNDAEARFLLGKIYLALGDYAAAEKELRKALSLG---YPKNQVLP 94 (899)
T ss_pred CHHHHHHHHHHH-HHcCChHhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CChhhhHH
Confidence 455677777877 79999999999999999865 5678889999999999999999999999999988 67788889
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++.++...|++++|+..+.+..... .+.....+..++.++...|++++|...|+++.+..+
T Consensus 95 ~~a~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------------- 156 (899)
T TIGR02917 95 LLARAYLLQGKFQQVLDELPGKTLLD-DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP----------------- 156 (899)
T ss_pred HHHHHHHHCCCHHHHHHhhcccccCC-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------
Confidence 99999999999999999998775322 244566888999999999999999999999987642
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVY 248 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 248 (965)
.+..++..++..+...|++++|..+++++.+..+ ++...+..+...+...|++++|...|+++.+.. +.+..++
T Consensus 157 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 230 (899)
T TIGR02917 157 ----RSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVL 230 (899)
T ss_pred ----CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 3566788899999999999999999999988754 478888899999999999999999999999876 5677888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcC
Q 046930 249 ATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEED 324 (965)
Q Consensus 249 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~ 324 (965)
..++..+...|++++|...++.+.+.... +...+......+...|++++|...+... +.+...+..+...+...|
T Consensus 231 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g 309 (899)
T TIGR02917 231 LALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Confidence 88999999999999999999999887443 4445555566778899999999988643 344556667778889999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046930 325 NVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD 404 (965)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (965)
++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|.+.|+
T Consensus 310 ~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 387 (899)
T TIGR02917 310 NLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLA 387 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998875 3456777888899999999999999999998765 4567788899999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccch
Q 046930 405 ELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYD 484 (965)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (965)
++.+..|.+...+..++..+...|++++|+..++.+...... .......+...+.+.|+.+++...+.++....|.. .
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 465 (899)
T TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN-A 465 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-c
Confidence 999999999999999999999999999999999999886422 23344556678889999999999999998776654 4
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHH
Q 046930 485 IICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYL 564 (965)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (965)
.++..++..+...|++++|...|+++.+..+ .+...+..+...+...|+.+.+...+..++...+.....+..++..+.
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 6788899999999999999999999987553 234567778888899999999999999999999998899999999999
Q ss_pred hhhcHHHHHHHHHhhhhcCc-cccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 046930 565 CLNDVTNALLFIKNMKEISS-TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDL 643 (965)
Q Consensus 565 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 643 (965)
..|++++|+.+++++...++ +......++..+...|+.++|...+..+....|. +...|..++.++...|++++|+..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999877554 4455567788999999999999999998776654 688999999999999999999999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 046930 644 CAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFK 723 (965)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (965)
|+.+.+.. +.+...+..++.++.+.|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+.+.. +
T Consensus 624 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 624 FKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 99998874 3477789999999999999999999999999854 3447889999999999999999999999999874 6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC-hHHHHHH
Q 046930 724 PSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD-FLGFLYL 802 (965)
Q Consensus 724 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 802 (965)
++...+..++.++...|++++|...|+++... .|+..++..++.++...|++++|++.++++++ ..|+ ...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 67888899999999999999999999999985 67667888899999999999999999999976 3454 4558889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhh
Q 046930 803 VKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDR 881 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 881 (965)
+..+...|++++|...|+++++. .| ++..+..++..+.+.|+ ++|+..++++..... ....
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~---- 838 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKK------------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPA---- 838 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcH----
Confidence 99999999999999999999984 33 34456777778889999 889999999765422 1111
Q ss_pred hhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHhhhccchHHHHHHHHHHHhc
Q 046930 882 AIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCSKGELQKANKLMKEMLS 959 (965)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 959 (965)
....++..+...|++++|+..++++++.. |.+..++++++..|.+.|++++|++++++++.
T Consensus 839 ----------------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 839 ----------------ILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 11233556778899999999999999998 66777777776679999999999999999874
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-50 Score=495.21 Aligned_cols=846 Identities=12% Similarity=0.046 Sum_probs=717.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
++...+...+..+...|++++|+..|++.++.+ |.++.++..++.++.+.|++++|+..|+++...+ +++.....
T Consensus 20 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 94 (899)
T TIGR02917 20 QSPESLIEAAKSYLQKNKYKAAIIQLKNALQKD---PNDAEARFLLGKIYLALGDYAAAEKELRKALSLG--YPKNQVLP 94 (899)
T ss_pred CCHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhHH
Confidence 366677788899999999999999999999988 8899999999999999999999999999999876 56667778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.++.++...|++++|...+.+..... .+.....+..+...+...|++++|...|+++++.
T Consensus 95 ~~a~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 95 LLARAYLLQGKFQQVLDELPGKTLLD--------------------DEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred HHHHHHHHCCCHHHHHHhhcccccCC--------------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88999999999999999987664211 1245677888889999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYN 284 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 284 (965)
.+. +...+..++..+...|++++|..+++++.+.. +++...+..+...+...|++++|...|++.....+ .+..++.
T Consensus 155 ~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~ 231 (899)
T TIGR02917 155 DPR-SLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLL 231 (899)
T ss_pred CCC-ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 654 67788889999999999999999999998875 56778888889999999999999999999988754 3677888
Q ss_pred HHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 046930 285 TIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGA 360 (965)
Q Consensus 285 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 360 (965)
.++..+...|++++|...+..+ +.+...+......+...|++++|+..++.+.+.++. ....+..+...+...|+
T Consensus 232 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~ 310 (899)
T TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGN 310 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCC
Confidence 9999999999999999887643 455556666667778899999999999999887633 34455566778889999
Q ss_pred HHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046930 361 LEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIEL 440 (965)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (965)
+++|...++.+.+.. +.+...+..++..+...|++++|+..+.++....+.+...+..++..+...|++++|...|+++
T Consensus 311 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 311 LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998864 4456678888999999999999999999999998889999999999999999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchh
Q 046930 441 NEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQ 520 (965)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 520 (965)
.+.. +.+...+..+...+...|+.++|...+.++....+... .....++..+.+.|++++|...++.+.... +.+..
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 466 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNAS 466 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcH
Confidence 8763 33455666677778889999999999999988776543 345567788999999999999999987743 34566
Q ss_pred cHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCc-cccchHHHHHHHHhc
Q 046930 521 SYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS-TVTIPVNVLKKLLKA 599 (965)
Q Consensus 521 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 599 (965)
.+..+...+...|+++.+...+...++..+........++..+...|++++|+..++++....+ +......+...+...
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 8888899999999999999999999999999889999999999999999999999999887655 455556777888999
Q ss_pred CCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHH
Q 046930 600 GSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLF 679 (965)
Q Consensus 600 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 679 (965)
|+.++|...+..+....| .+...+..++..+.+.|++++|+.+++.+.+.. +.+..+|..++.+|...|++++|+..|
T Consensus 547 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999876654 467888999999999999999999999998764 457889999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 046930 680 DSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP 759 (965)
Q Consensus 680 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 759 (965)
+++.+.. +.+...+..++.++...|++++|.++|+++.+. .+.+..++..++.++...|++++|..+++.+.+.. ++
T Consensus 625 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 701 (899)
T TIGR02917 625 KKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PK 701 (899)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 9999854 345778889999999999999999999999985 35568899999999999999999999999999863 44
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc
Q 046930 760 DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV 839 (965)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 839 (965)
+...+..++..+...|++++|++.|+++.+ ..|+...+..++.++.+.|++++|.+.++++++..+ .
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-----------~ 768 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-----------N 768 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------C
Confidence 677888899999999999999999999976 567777788899999999999999999999998422 2
Q ss_pred ccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhccccccccccccccccCccccccccc
Q 046930 840 ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNY 919 (965)
Q Consensus 840 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (965)
+...+..++..+...|++++|++.|+++....++.... ...+++.+...|+ .+|+..+
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---------------------~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV---------------------LNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH---------------------HHHHHHHHHhcCc-HHHHHHH
Confidence 34466667778889999999999999987653322111 2233455566777 7799999
Q ss_pred ccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhcccccCC
Q 046930 920 HNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSFKEDS 965 (965)
Q Consensus 920 ~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~~~~~ 965 (965)
++++... |+.+..+..++. |...|++++|++.|+++++..|+|.
T Consensus 827 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 827 EKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred HHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 9999877 555555555555 9999999999999999999999763
No 7
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-53 Score=489.99 Aligned_cols=467 Identities=17% Similarity=0.287 Sum_probs=382.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 211 ITYTAIIFGFCKKGKLEEAFTVFKKVEDLG-LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289 (965)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 289 (965)
.+|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.++.+.++++.+.+++..|.+.|+.||..+++.++.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 344444444444444444444444444332 3344444444444444444444444444444444444444444444444
Q ss_pred HHhcCCcchHHHHHcCCC-CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046930 290 LCKVGRTSDAEEVSKGIL-GDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALY 368 (965)
Q Consensus 290 ~~~~g~~~~a~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (965)
|.+.|+++.|.++|+.++ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++...|..+.+.+++
T Consensus 168 y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 444444444444444442 4555555666666666677777788889999999999999999999999999999999999
Q ss_pred HHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 046930 369 QAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLY 448 (965)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (965)
..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999998854 5889999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHH
Q 046930 449 VGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKG 528 (965)
Q Consensus 449 ~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (965)
..++..++.+ |++.|++++|.+++..|.+.|..
T Consensus 325 ~~t~~~ll~a-----------------------------------~~~~g~~~~a~~i~~~m~~~g~~------------ 357 (697)
T PLN03081 325 QFTFSIMIRI-----------------------------------FSRLALLEHAKQAHAGLIRTGFP------------ 357 (697)
T ss_pred HHHHHHHHHH-----------------------------------HHhccchHHHHHHHHHHHHhCCC------------
Confidence 9998888877 46778888899999888886643
Q ss_pred HHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHH
Q 046930 529 LDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKL 608 (965)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 608 (965)
T Consensus 358 -------------------------------------------------------------------------------- 357 (697)
T PLN03081 358 -------------------------------------------------------------------------------- 357 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 046930 609 VMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMV 688 (965)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 688 (965)
+|..++++++.+|++.|++++|.++|++|.+ ||..+||.|+.+|++.|+.++|+++|++|.+.|+.
T Consensus 358 ----------~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 358 ----------LDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred ----------CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3688899999999999999999999999864 59999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHH
Q 046930 689 PSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAV 767 (965)
Q Consensus 689 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 767 (965)
||..||+.++.+|.+.|.+++|.++|+.|.+. |+.|+..+|+.++++|++.|++++|.+++++|. +.|+..+|++|
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 99999999999999999999999999999874 999999999999999999999999999998874 68999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 768 INGFCQKGDMEGALGFFLDFNTKGVSPDF-LGFLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
+.+|...|+++.|..+++++. ++.|+. .+|..|+++|.+.|++++|.+++++|.+.+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999994 577864 469999999999999999999999999865
No 8
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.1e-53 Score=486.35 Aligned_cols=472 Identities=21% Similarity=0.302 Sum_probs=385.9
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~ 163 (965)
...|+.++..+.+.|++++|+++|+.+...+++.|+..+|+.++.++.+.++++.|.+++..|.+.|
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------------- 153 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------------- 153 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------------
Confidence 3478899999999999999999999998766677899999999999999999999999998888654
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 046930 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVA 243 (965)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 243 (965)
+.||..+|+.++.+|.+.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 154 -------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 154 -------FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred -------CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 57888999999999999999999999999985 4689999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhc
Q 046930 244 DEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEE 323 (965)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~ 323 (965)
+..+|+.++.++.+.|+.+.+.+++..+.+.|+.||..+++.|+.+|.+.|++++|.++|+.++
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------------- 286 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------------- 286 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----------------
Confidence 9999999999999999999999999999999999999999999999999888888888876552
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 046930 324 DNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIF 403 (965)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (965)
.+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++
T Consensus 287 ------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 287 ------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred ------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 23455555555556666666666666666655555566666666666666666666666666
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhccccc
Q 046930 404 DELRRMS-ISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEI 482 (965)
Q Consensus 404 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~ 482 (965)
..+.+.+ +++..+++.++.+|++.|++++|.++|++|.+
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------------------------------------- 388 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---------------------------------------- 388 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------
Confidence 6555542 33444555555555555555555555544421
Q ss_pred chhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHH
Q 046930 483 YDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQ 562 (965)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (965)
T Consensus 389 -------------------------------------------------------------------------------- 388 (697)
T PLN03081 389 -------------------------------------------------------------------------------- 388 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 046930 563 YLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALD 642 (965)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 642 (965)
+|..+|+.|+.+|++.|+.++|++
T Consensus 389 --------------------------------------------------------~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 389 --------------------------------------------------------KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred --------------------------------------------------------CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 246678888888899999999999
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 046930 643 LCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLER-IDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKG 721 (965)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (965)
+|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 999999999999999999999999999999999999999986 688999999999999999999999999998765 5
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 722 FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 722 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
+.|+..+|+.|+.+|...|+++.|..+++++.+ +.|+ ..+|..|+.+|.+.|++++|.++++.|.+.|+.+
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 789999999999999999999999999999876 4674 6789999999999999999999999999888754
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-31 Score=323.37 Aligned_cols=661 Identities=12% Similarity=0.018 Sum_probs=437.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH-----
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY----- 123 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----- 123 (965)
.....++.+...++.+.|.+.++++...+ |.++.++..++..+.+.|+.++|.+.++++.+.. |.+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~---p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~ 104 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID---PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHH
Confidence 35566777888899999999999999988 7889999999999999999999999999999876 4454432
Q ss_pred -----------HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH-HHHHHHHHHHhcCCH
Q 046930 124 -----------TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV-SYTILLDGFSKEGTI 191 (965)
Q Consensus 124 -----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 191 (965)
..+++.+...|++++|++.|+++.+.++ |+.. ....+.......|+.
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p---------------------~~~~la~~y~~~~~~~~g~~ 163 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP---------------------PELDLAVEYWRLVAKLPAQR 163 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC---------------------CChHHHHHHHHHHhhCCccH
Confidence 3445567888999999999999886532 3322 111122223346899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 192 EKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
++|++.|+++.+..+. +...+..+...+...|++++|+..++++.... ..+...-..........+....+...+...
T Consensus 164 ~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~-~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~ 241 (1157)
T PRK11447 164 PEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP-AGRDAAAQLWYGQIKDMPVSDASVAALQKY 241 (1157)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 9999999999987544 67778888888999999999999999987642 111111111111111223333344444433
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC---CCCCHH-HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHH
Q 046930 272 EKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG---ILGDVV-TYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVM 347 (965)
Q Consensus 272 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 347 (965)
... .|+.. ....|...+.. ...+.. ........+...|++++|+..|+++++.. +.+...
T Consensus 242 l~~--~p~~~-------------~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a 305 (1157)
T PRK11447 242 LQV--FSDGD-------------SVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEA 305 (1157)
T ss_pred HHH--CCCch-------------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 322 11111 11112222211 111111 11233556777888888888888888765 346777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCcc-cHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 046930 348 CNILIKALFMVGALEDARALYQAMPEMNLVA-NSV------------TYSTMIDGYCKLGRIEEALEIFDELRRMSISSV 414 (965)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 414 (965)
+..+...+.+.|++++|+..|++..+..... ... ........+.+.|++++|+..|+++.+..|.+.
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~ 385 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS 385 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 7888888888888888888888887654111 111 112235567788888899999888888888888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHH
Q 046930 415 ACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG-MHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISF 493 (965)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (965)
.++..++.++...|++++|++.|+++++. .|+.. .+..+...+ ..++
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~-~~~~----------------------------- 433 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLY-RQQS----------------------------- 433 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-HhcC-----------------------------
Confidence 88888888888888899999888888875 34432 222222222 2233
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHH
Q 046930 494 LCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNAL 573 (965)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 573 (965)
.++|...++.+...... ....... ......+...+..+...+++++|+
T Consensus 434 ------~~~A~~~l~~l~~~~~~----~~~~~~~----------------------~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 434 ------PEKALAFIASLSASQRR----SIDDIER----------------------SLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred ------HHHHHHHHHhCCHHHHH----HHHHHHH----------------------HhhhhHHHHHHHHHHHCCCHHHHH
Confidence 34444444332211100 0000000 000011222333444444555555
Q ss_pred HHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 046930 574 LFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGIT 653 (965)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 653 (965)
..|++..... |.++.++..++..|.+.|++++|+..++++.+..+
T Consensus 482 ~~~~~Al~~~----------------------------------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P- 526 (1157)
T PRK11447 482 ELQRQRLALD----------------------------------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP- 526 (1157)
T ss_pred HHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence 5554443332 34677778888888888888888888888877533
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH---------hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 046930 654 VNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSE---------VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKP 724 (965)
Q Consensus 654 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (965)
.+...+..+...+...++.++|+..++.+......++. ..+..+...+...|+.++|+++++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 25555666666677788888888888776432222221 1233456778899999999999882 355
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHH
Q 046930 725 STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYL 802 (965)
Q Consensus 725 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l 802 (965)
+...+..++..+.+.|++++|+..|+++++. .| +..++..++.+|...|++++|++.++.+.+ ..|+... +..+
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~l 677 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRV 677 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHH
Confidence 6778889999999999999999999999984 67 567899999999999999999999998854 5666554 7778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc---ccccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 803 VKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV---ESESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
+.++...|++++|.++|++++...+. ..| +...+..++..+...|++++|++.|++...
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~~~--------~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQAKS--------QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhCcc--------CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999874321 111 112344456677889999999999998753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.6e-31 Score=319.36 Aligned_cols=662 Identities=13% Similarity=0.022 Sum_probs=450.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH-----
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC----- 87 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 87 (965)
+..-...++...++++.|.+.+.+++... |.++.++..++..+...|+.++|.+.++++.+.+ |.++.+.
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~---P~~~~~~~~~~~ 104 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA---PDSNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCChHHHHHHHH
Confidence 33333445689999999999999988765 5678888999999999999999999999999998 5665543
Q ss_pred -----------HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCccch
Q 046930 88 -----------SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVS-YTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155 (965)
Q Consensus 88 -----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (965)
...+..+.+.|++++|++.|++++... ||+... ...........|++++|+..++++.+..|
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P---- 178 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP---- 178 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC----
Confidence 455678899999999999999999865 555432 11122223346999999999999998642
Q ss_pred hhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046930 156 VFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKK 235 (965)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 235 (965)
.+...+..+...+...|++++|++.|+++...... +...-..........+....+...+..
T Consensus 179 -----------------~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 179 -----------------GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred -----------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 45778889999999999999999999999764211 111111111111111222222222222
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHH
Q 046930 236 VEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVV 311 (965)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~ 311 (965)
. +..+-.....+.|...+.........|... .......+...|++++|+..|+.. |.+..
T Consensus 241 ~---------------l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~ 304 (1157)
T PRK11447 241 Y---------------LQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE 304 (1157)
T ss_pred H---------------HHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 2 222212222344555555544432233322 123355666777777777776543 45677
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC-HHH------------HHHHHHHHHhcCCHHHHHHHHHHchhCCCcc
Q 046930 312 TYSTLLHGYIEEDNVNGILETKQRLEEAGIQMD-IVM------------CNILIKALFMVGALEDARALYQAMPEMNLVA 378 (965)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 378 (965)
++..+..++.+.|++++|+..|+++.+..+... ... .......+.+.|++++|...|+++.+.. +.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 777777788888888888888888776653321 111 1223456778999999999999999875 45
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 379 NSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
+..++..++.++...|++++|++.|+++.+..|.+..++..+...|. .++.++|+.+++.+.... +. ........
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~--~~--~~~~~~~~ 458 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ--RR--SIDDIERS 458 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH--HH--HHHHHHHH
Confidence 66788889999999999999999999999999999999988888885 457899998887654321 10 00000000
Q ss_pred HHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhh
Q 046930 459 TFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLI 538 (965)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (965)
+ ....+...+..+...|++++|+..|+++++..+
T Consensus 459 l-----------------------~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P----------------------- 492 (1157)
T PRK11447 459 L-----------------------QNDRLAQQAEALENQGKWAQAAELQRQRLALDP----------------------- 492 (1157)
T ss_pred h-----------------------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------------
Confidence 0 001334455667777777777777777666432
Q ss_pred hhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCC
Q 046930 539 GPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPC 618 (965)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 618 (965)
........++..+...|++++|+..++++.... |
T Consensus 493 ------------~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~----------------------------------P 526 (1157)
T PRK11447 493 ------------GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK----------------------------------P 526 (1157)
T ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------------C
Confidence 122223344444444555555555555443322 2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNI---------VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVP 689 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 689 (965)
.++..+..++..+...+++++|+..++.+......++. ..+..+...+...|++++|+.+++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 23444444455555566666666666654332111111 1223456778899999999999872 244
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHH
Q 046930 690 SEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVI 768 (965)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 768 (965)
+...+..+...+.+.|++++|++.|+++++.. +.+...+..++.+|...|++++|++.++++.+. .|+ ..++..++
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la 678 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVA 678 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHH
Confidence 56677888999999999999999999999862 556889999999999999999999999998874 664 56778889
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCC--CC---ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 769 NGFCQKGDMEGALGFFLDFNTKGV--SP---DFLGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
.++...|++++|+++|++++...- .| +...+..++..+...|++++|+..|++++..
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999976321 12 1124666788999999999999999999863
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=5.9e-29 Score=284.76 Aligned_cols=219 Identities=12% Similarity=-0.032 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHcc
Q 046930 626 TIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKE 704 (965)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 704 (965)
.++..+...|++++|+..|+++... +|+...+..++.++.+.|++++|...++++++.+ |+ ...+..+...+...
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhC
Confidence 3344445667777777777665543 2333445555666666777777777777666643 32 22333333334445
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 046930 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGF 783 (965)
Q Consensus 705 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 783 (965)
|++++|+..|++.++. .|+...+..++.++.+.|++++|+..+++++.. .|+ ...++.++.++...|++++|++.
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777776653 455666666777777777777777777776663 553 44566666666677777777777
Q ss_pred HHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHH-HHHHhhhcCcHHHHH
Q 046930 784 FLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLN-FLISLCEQGSILEAI 861 (965)
Q Consensus 784 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~ 861 (965)
|+++++ +.|+... +..++.++...|++++|+..|+++++ ..|+...+.. .+..+....+++.|.
T Consensus 666 l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~------------l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 666 LERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID------------DIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------cCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 776654 5555443 66677777777777777777777766 4444433322 233344555566666
Q ss_pred HHHHH
Q 046930 862 AILDE 866 (965)
Q Consensus 862 ~~~~~ 866 (965)
+.+++
T Consensus 732 ~~~~r 736 (987)
T PRK09782 732 EEVGR 736 (987)
T ss_pred HHHHH
Confidence 65554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.3e-28 Score=279.97 Aligned_cols=632 Identities=11% Similarity=0.014 Sum_probs=431.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+...+..+...|++++|+..|+.+++.+ |.++.++..++.+|...|++++|+..++++++.+ |.|...+..+..+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~d---P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQV---PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh
Confidence 3334444556699999999999999999 7889999999999999999999999999999976 4444444444322
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHH
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDG--------FSKEGTIEKAVGILNKM 201 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~ 201 (965)
+++++|..+|+++....+ .+..++..+... |.+. ++|.+.++ .
T Consensus 122 ----~~~~kA~~~ye~l~~~~P---------------------~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-l 172 (987)
T PRK09782 122 ----PVEVKSVTTVEELLAQQK---------------------ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-D 172 (987)
T ss_pred ----ccChhHHHHHHHHHHhCC---------------------CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-H
Confidence 999999999999998642 345555555554 5544 55555555 3
Q ss_pred HHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHhHHHHHHHHHHHCCCCCC
Q 046930 202 IEDRLRPNLITYTAI-IFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR-RGDLDCAFRLLEDMEKKGIKPS 279 (965)
Q Consensus 202 ~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~~~ 279 (965)
....+.|+....... ..+|.+.|++++|+..+.++.+.+ +.+......|..+|.. .++ +.+..+++... .-+
T Consensus 173 r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d 246 (987)
T PRK09782 173 ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTD 246 (987)
T ss_pred hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccC
Confidence 333345455555554 899999999999999999999987 4556667777788887 466 77877765422 347
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHcCCC------CCHHHHHHHHHHhhhcCChh-HHHHHHHHHHHcCCCCC-HHHHHHH
Q 046930 280 IVTYNTIINGLCKVGRTSDAEEVSKGIL------GDVVTYSTLLHGYIEEDNVN-GILETKQRLEEAGIQMD-IVMCNIL 351 (965)
Q Consensus 280 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~l 351 (965)
...+..++..|.+.|+.++|..++..++ |...+|..++. +.+... .|..-+.+ + ..++ ......+
T Consensus 247 ~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 319 (987)
T PRK09782 247 PQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--Q--FADNRQYVVGAT 319 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhh--h--hHHHHHHHHHHH
Confidence 8889999999999999999999987664 33344433332 222221 11111111 0 0111 1122234
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 046930 352 IKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVD 431 (965)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (965)
+..+.+.+.++-+.++.. +.|.......-.......+...++.+.++.+.+..|.+......+.....+.|+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~ 393 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSR 393 (987)
T ss_pred HHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHH
Confidence 677788888886665532 12322222111111223467778888888888877888888888888888899999
Q ss_pred HHHHHHHHHHHC-C-CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHH---HHHHH
Q 046930 432 MATEVFIELNEK-G-LSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSE---VASEL 506 (965)
Q Consensus 432 ~A~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~ 506 (965)
+|..++++.... + ..++.....-+. ..|.+.+... .+..+
T Consensus 394 ~a~~~~~~~~~~~~~~~~~~~l~~~l~-----------------------------------~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 394 EAADLLLQRYPFQGDARLSQTLMARLA-----------------------------------SLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHhcCCCcccccCHHHHHHHH-----------------------------------HHHHhCCcccchHHHHHh
Confidence 999999888763 1 122222222333 3344444422 22211
Q ss_pred HHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccc
Q 046930 507 YMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTV 586 (965)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 586 (965)
-..+...+ -. .-. ++..++
T Consensus 439 ~~~~~~~~-------~~------~~~----------------------------------~~~~~~-------------- 457 (987)
T PRK09782 439 SKPLPLAE-------QR------QWQ----------------------------------SQLPGI-------------- 457 (987)
T ss_pred ccccccch-------hH------HHH----------------------------------hhhhhh--------------
Confidence 11111100 00 000 000000
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHhhhccCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 046930 587 TIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCM--DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIH 664 (965)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 664 (965)
..++..+...... .|+ +..+|..++.++.. ++.++|+..+.+..... |+......++.
T Consensus 458 ----------------~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~ 517 (987)
T PRK09782 458 ----------------ADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAY 517 (987)
T ss_pred ----------------hhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHH
Confidence 0011111111111 133 67888999988887 89999999888888763 45544445566
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 046930 665 SLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEE 744 (965)
Q Consensus 665 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 744 (965)
.+...|++++|+..|+++... .|+...+..+..++...|++++|.++|++.++.. +++...+..+...+...|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 667899999999999998664 3555556777788899999999999999999863 3344444444555556699999
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHH
Q 046930 745 AFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREML 823 (965)
Q Consensus 745 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~ 823 (965)
|+..++++++ +.|+...+..++.++.+.|++++|++.|+++++ +.|+... +..++.++...|++++|+.+|++++
T Consensus 595 Al~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998 478888899999999999999999999999966 7787666 8889999999999999999999999
Q ss_pred hcCcchhhhhccccccc-cccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 824 QSKSVLELINRVDIEVE-SESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 824 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
+ ..|+ +..+.+++..+...|++++|+..++++..
T Consensus 671 ~------------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 671 K------------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred H------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8 4553 45677888889999999999999998753
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.98 E-value=5.9e-29 Score=248.77 Aligned_cols=439 Identities=14% Similarity=0.138 Sum_probs=297.5
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHH
Q 046930 313 YSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCK 392 (965)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (965)
...|.+-..+.|++.+|.+.-..+-..+ +.+....-.+...+.+..+++.....-....+.. +.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555556677777776655554443 2222333334445566666666555444444332 2345678888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHH
Q 046930 393 LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFV 472 (965)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~ 472 (965)
.|+++.|+..|+.+++..|....+|..++.++...|+.+.|...|.+.++. .|+.....+-+..
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn-------------- 192 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN-------------- 192 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH--------------
Confidence 899999999999888888888889999999998889888888888888865 5665544433333
Q ss_pred HHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCC
Q 046930 473 YRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLV 552 (965)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (965)
.+...|+..+|...|.++++.. +..
T Consensus 193 --------------------Llka~Grl~ea~~cYlkAi~~q-----------------------------------p~f 217 (966)
T KOG4626|consen 193 --------------------LLKAEGRLEEAKACYLKAIETQ-----------------------------------PCF 217 (966)
T ss_pred --------------------HHHhhcccchhHHHHHHHHhhC-----------------------------------Cce
Confidence 3445566666666666655421 111
Q ss_pred chHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 046930 553 EPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALC 632 (965)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (965)
.-++..++..+...|+...|+..|++..... |.-..+|..|+..|-
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkld----------------------------------P~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD----------------------------------PNFLDAYINLGNVYK 263 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcCC----------------------------------CcchHHHhhHHHHHH
Confidence 2222333333333334444444443333322 234667778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHH
Q 046930 633 REGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAK 711 (965)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 711 (965)
..+.+++|+..|.++.... +.....+..|...|..+|.++-|+..|++.++ +.|+ ...|+.|..++-..|+..+|.
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHH
Confidence 8888888888888777653 23556777778888888888888888888877 4566 677888888888888888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 046930 712 KLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTK 790 (965)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (965)
.+|++++.. .+.-..+.++|+.+|...|.+++|..+|....+ +.|. ....++|+..|-++|++++|+..|++++.
T Consensus 341 ~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr- 416 (966)
T KOG4626|consen 341 DCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR- 416 (966)
T ss_pred HHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-
Confidence 888888874 133356778888888888888888888888877 5776 45778888888888888888888888854
Q ss_pred CCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccccc-ccHHHHHHHhhhcCcHHHHHHHHHHHh
Q 046930 791 GVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVES-ESVLNFLISLCEQGSILEAIAILDEIG 868 (965)
Q Consensus 791 ~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 868 (965)
+.|+..- |.++++.|...|+.++|+..|.++++ +.|.. ++..+|+..+..+|+..+|++.|++.+
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~------------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ------------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh------------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 7887765 78888888888888888888888887 55543 345566667778888888888888754
Q ss_pred hc-cCCCcccc
Q 046930 869 YM-LFPTQRFG 878 (965)
Q Consensus 869 ~~-~~~~~~~~ 878 (965)
.. +..++..|
T Consensus 484 klkPDfpdA~c 494 (966)
T KOG4626|consen 484 KLKPDFPDAYC 494 (966)
T ss_pred ccCCCCchhhh
Confidence 33 44444443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.6e-26 Score=241.39 Aligned_cols=442 Identities=15% Similarity=0.105 Sum_probs=281.0
Q ss_pred CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccH--HH
Q 046930 307 LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ--MDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS--VT 382 (965)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 382 (965)
+.|+.+.+.|...|...|++..++.+...+...... .-...|..+.++|...|++++|..+|.+..+.+ ++. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 455566666666666666666666666666554311 112456677888888888888888887776654 333 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 383 YSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSG----MVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
+..++..+.+.|+++.+...|+++....|.+..+...++..|...+ ..+.|..++.+..+. .|...-.+..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 5567777888888888888888888888888888888888777664 456677777666654 3444444444444
Q ss_pred HHHcCChhhHHHHHHHH----HhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCccch------hcHHHH
Q 046930 459 TFAKGGVGGVLNFVYRI----ENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKR---GSVVTD------QSYYSI 525 (965)
Q Consensus 459 ~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~l 525 (965)
+...++....+..+..+ ......++..+.|.++..++..|.+..|...|..+... ...++. ..-+.+
T Consensus 423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 44445544445555443 33444477789999999999999999999999887665 122222 134556
Q ss_pred HHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHH-HHHhcCCHHH
Q 046930 526 LKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLK-KLLKAGSVLD 604 (965)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 604 (965)
.+..-..++...+......+++.||...+++.+++......++..+|..+++.....+...+...+++. .++....+.-
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 666666778888888999999999998888888886666678899999999998877664444444444 4444444444
Q ss_pred HHHHHHhhhcc-CCCCchhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 046930 605 VYKLVMGAEDS-LPCMDVVDYSTIVAALCR------------EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC 671 (965)
Q Consensus 605 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 671 (965)
|..-+....+. ....|+.+.-+|++.|.+ .+..++|+++|.+++...+. |..+-|.++-+++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccC
Confidence 44322222111 111344444555554432 12345666666666665333 56666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 046930 672 FVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKFLH 750 (965)
Q Consensus 672 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 750 (965)
+.+|+.+|.+..+.. .....+|..+.++|..+|++..|+++|+...+. .-..+..+...|+.++.++|++.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666666666666543 123455666666666666666666666666654 323355666666666666666666666666
Q ss_pred Hhhh
Q 046930 751 DLKI 754 (965)
Q Consensus 751 ~~~~ 754 (965)
.+..
T Consensus 741 ~a~~ 744 (1018)
T KOG2002|consen 741 KARH 744 (1018)
T ss_pred HHHH
Confidence 6655
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.1e-25 Score=231.62 Aligned_cols=568 Identities=12% Similarity=0.057 Sum_probs=413.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHH
Q 046930 191 IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLED 270 (965)
Q Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 270 (965)
++.|.+.|...++..+ +|...+---.......|++..|+.+|..+...+..--+.....+..++.+.|+.+.|...|..
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 6899999999988753 366666555666777889999999999977654322222333445677899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 046930 271 MEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNI 350 (965)
Q Consensus 271 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (965)
..+.++. ++.++..|...-.... ....+..+...+....... +.++...+.
T Consensus 225 alqLdp~-~v~alv~L~~~~l~~~---------------------------d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 225 ALQLDPT-CVSALVALGEVDLNFN---------------------------DSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred HHhcChh-hHHHHHHHHHHHHHcc---------------------------chHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 9987331 2222222222111111 1133445555555554443 457788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhc
Q 046930 351 LIKALFMVGALEDARALYQAMPEMNLV--ANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISS-VACYNCIINGLCKS 427 (965)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 427 (965)
|.+.|.-.|+++.++.+...+...... .-+..+..++++|-..|++++|...|-+..+..+.+ .-.+..++.+|...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 999999999999999999988764311 123468899999999999999999999999987776 77889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HHcC----ChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHH
Q 046930 428 GMVDMATEVFIELNEKGLSLYVGMHKIILQAT-FAKG----GVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEV 502 (965)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (965)
|+++.+...|+.+.+. .|+..-...++..+ ...+ ..+.|..++.+.....+. +...|-.+..++....-+..
T Consensus 356 ~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS 432 (1018)
T ss_pred chHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH
Confidence 9999999999999987 56655555555443 3332 335555666665555432 23455555555444333333
Q ss_pred HHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhc
Q 046930 503 ASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEI 582 (965)
Q Consensus 503 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 582 (965)
+..|..++. ++. ...+.+.+.++..++..++..|++.+|...|++....
T Consensus 433 -L~~~~~A~d----------------------------~L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 433 -LDAYGNALD----------------------------ILE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred -HHHHHHHHH----------------------------HHH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 555554432 000 1122344556778888888889999999888876543
Q ss_pred -----------CccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046930 583 -----------SSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKG 651 (965)
Q Consensus 583 -----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 651 (965)
...++.-++++..+-..++.+.|.+.+..+....|. -...|.-++.+-...+...+|...+......+
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 112344678888888888999999999888887765 46777777755566788999999999988774
Q ss_pred CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHc------------cCChHHHHHHHHHHH
Q 046930 652 ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI-DMVPSEVSYATLIYNLCK------------EGQLLDAKKLFDRMV 718 (965)
Q Consensus 652 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~ 718 (965)
..++..+..++..+.+...+..|.+-|....+. ...+|+.+..+|...|.. .+..++|+++|.+++
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 347778888898999999999999988777653 223677777788776643 345788999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CChH
Q 046930 719 LKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVS-PDFL 797 (965)
Q Consensus 719 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~ 797 (965)
+.. +-|...-|.++.+++..|++.+|..+|.++.+.. .-+..+|.+++.+|...|+|-.|+++|+.....-.. .+..
T Consensus 640 ~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 640 RND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred hcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 863 5688888999999999999999999999999862 345678999999999999999999999998664333 3445
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 798 GFLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 798 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
....|+.++++.|++.+|...+..++...
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 58899999999999999999999998743
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=5.8e-27 Score=234.61 Aligned_cols=380 Identities=18% Similarity=0.184 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046930 345 IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGL 424 (965)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (965)
..+|..+.+.+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+.++.+|....+...++..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 4577777777777888888888888777754 234557777888888888888888888888877777777777777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHH
Q 046930 425 CKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVAS 504 (965)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 504 (965)
...|+..+|...|.+.++. .|.. ..+|..++-.+...|+...|+
T Consensus 195 ka~Grl~ea~~cYlkAi~~--qp~f----------------------------------AiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIET--QPCF----------------------------------AIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred HhhcccchhHHHHHHHHhh--CCce----------------------------------eeeehhcchHHhhcchHHHHH
Confidence 7778888888877777764 2321 135556666666677777777
Q ss_pred HHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCc
Q 046930 505 ELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS 584 (965)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 584 (965)
..|+++.+.+ |...+++..++..|-..+.+++|+..|.+.....
T Consensus 239 q~y~eAvkld-----------------------------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 239 QHYEEAVKLD-----------------------------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhcCC-----------------------------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 7777665532 3345566666666666667777777666655433
Q ss_pred cccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 046930 585 TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIH 664 (965)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 664 (965)
|.+..++-.++..|..+|.+|-|+..|++.++..+. -..+|+.|..
T Consensus 283 ---------------------------------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nlan 328 (966)
T KOG4626|consen 283 ---------------------------------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLAN 328 (966)
T ss_pred ---------------------------------CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHH
Confidence 346777888888999999999999999999987322 4579999999
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCH
Q 046930 665 SLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPS-TRIYNSFIDGYCKFGQL 742 (965)
Q Consensus 665 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 742 (965)
++-..|+..+|...|.+++... |+ +...+.|...|...|.+++|..+|...++- .|. ....++|+.+|-++|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccH
Confidence 9999999999999999999854 66 788999999999999999999999999984 444 66889999999999999
Q ss_pred HHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHH
Q 046930 743 EEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILR 820 (965)
Q Consensus 743 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~ 820 (965)
++|+..|++++. +.|+ ..+|++++..|-..|+.+.|++.|.++++ +.|.... +.+|+..|...|++.+|+..|+
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999998 6997 57999999999999999999999999976 7888766 8899999999999999999999
Q ss_pred HHHhcCcchhhhhcccccccc-ccHHHHHHHh
Q 046930 821 EMLQSKSVLELINRVDIEVES-ESVLNFLISL 851 (965)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 851 (965)
++++ +.|+. +++.+++..+
T Consensus 481 ~aLk------------lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 481 TALK------------LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHc------------cCCCCchhhhHHHHHH
Confidence 9998 56654 4566676654
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=4e-21 Score=203.08 Aligned_cols=712 Identities=14% Similarity=0.091 Sum_probs=443.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
....+.++.+...|++++|.+++..+++.+ |.+..+|..++.+|-..|+.+++...+-.+-..+ |.|...|..+.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~la 214 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 344555666667799999999999999999 8899999999999999999999999998888776 77888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (965)
....+.|++++|.-+|.++++..| ++...+..-+..|.+.|+...|.+.|.++....++
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p---------------------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANP---------------------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC---------------------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 999999999999999999998753 56666666777899999999999999999987553
Q ss_pred CCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 046930 208 PNLITYT----AIIFGFCKKGKLEEAFTVFKKVEDLG-LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVT 282 (965)
Q Consensus 208 ~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 282 (965)
.|..-+. ..+..+...++-+.|.+.++.....+ -..+...++.++..|.+...++.+......+.....++|..-
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 3333222 34556777777789999998887632 133455788888899999999999998888877555556554
Q ss_pred HHHHHHHHHhcCCcc-h-HHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc
Q 046930 283 YNTIINGLCKVGRTS-D-AEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAG--IQMDIVMCNILIKALFMV 358 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~-~-a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 358 (965)
|..- ..++.+ . -..+=+....+..+ ..+.-++...+..+....+........ +..+...|.-+..+|...
T Consensus 354 ~~~~-----~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 354 WDTD-----ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred hhhh-----hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence 4210 011100 0 00111222334444 223333333333333333333444444 444567888999999999
Q ss_pred CCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 359 GALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
|++.+|+.+|..+.......+...|..++.+|...|.+++|++.|++++...|.+..+...|...+.+.|+.++|.+.+.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 99999999999998875556678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCC--------CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHH-HHHHHHHH
Q 046930 439 ELNEKG--------LSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSE-VASELYMF 509 (965)
Q Consensus 439 ~~~~~~--------~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~ 509 (965)
.+..-+ ..|+..........+...|+.++-++....+..... .+.-.+. .-.+-...
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~--------------~~~~~f~~~~k~r~~~ 573 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL--------------KKRYIFPRNKKKRRRA 573 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------------HHHHhcchHHHHHHHh
Confidence 876221 223333333333333333433332222222111000 0000000 00000000
Q ss_pred HHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccch
Q 046930 510 MRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIP 589 (965)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 589 (965)
....+..........++.+..+.++.....
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-------------------------------------------------- 603 (895)
T KOG2076|consen 574 IAGTTSKRYSELLKQIIRAREKATDDNVME-------------------------------------------------- 603 (895)
T ss_pred hccccccccchhHHHHHHHHhccCchHHhh--------------------------------------------------
Confidence 000001111111111111111111110000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhccCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-cHH---HH-HHHH
Q 046930 590 VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDV-VDYSTIVAALCREGYVNKALDLCAFAKNKGITV-NIV---TY-NTVI 663 (965)
Q Consensus 590 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~---~~-~~l~ 663 (965)
.....+.... ......+...|. ..+..++..+++.+++++|+.+...+.....-. +.. .. ...+
T Consensus 604 -----~~l~d~~~~~-----~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 604 -----KALSDGTEFR-----AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred -----hcccchhhhh-----hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 0000000000 000000111122 233566778889999999999988877653111 111 22 3345
Q ss_pred HHHHhcCcHHHHHHHHHHHHhC-CC--CCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 046930 664 HSLCRQGCFVEAFRLFDSLERI-DM--VPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKF 739 (965)
Q Consensus 664 ~~~~~~~~~~~A~~~~~~~~~~-~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 739 (965)
.+....+++..|.+.+..|+.. ++ .|. ...|+...+...+.++-.-=...+..+....-..++.....-+..+...
T Consensus 674 ~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~ 753 (895)
T KOG2076|consen 674 KASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVN 753 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhc
Confidence 6677889999999999998864 11 222 3455545555555554333333333333322111233333444556678
Q ss_pred CCHHHHHHHHHHhhhCCCCCChh-HHHHHHHHHHh----------cCCHHHHHHHHHHhHhCCCCC-ChHHHHHHHHHHh
Q 046930 740 GQLEEAFKFLHDLKINCLEPDKF-TVSAVINGFCQ----------KGDMEGALGFFLDFNTKGVSP-DFLGFLYLVKGLC 807 (965)
Q Consensus 740 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 807 (965)
+.+.-|+..|-++... .||.. +-..++-++.. +-.+-+++.++.+..+....- --..+++++.+|-
T Consensus 754 ~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh 831 (895)
T KOG2076|consen 754 ASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYH 831 (895)
T ss_pred cchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 8999999988888774 77643 33333333321 122445677776665533221 2345888999999
Q ss_pred cCCCHHHHHHHHHHHHhcCcchhhhhcc-ccccccccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 808 TKGRMEEARSILREMLQSKSVLELINRV-DIEVESESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 808 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
..|-+.-|.++|++++...+.+-..... ..+...++.++|.-.|..+|+..-|.+++++.
T Consensus 832 ~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 832 QIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 9999999999999999975432111100 01122346788888899999999999998864
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.8e-20 Score=213.36 Aligned_cols=430 Identities=13% Similarity=-0.014 Sum_probs=296.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 046930 347 MCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCK 426 (965)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (965)
.+...+..+.+.|++++|+..|++.++. .|+...+..+..+|.+.|++++|+..++++++..|.+..+|..++.+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4556677888999999999999998875 47788889999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHH
Q 046930 427 SGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASEL 506 (965)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 506 (965)
.|++++|+..+..+...+ ..+......++..+.. ..+...........+.... .+..+.
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~-~~~~~~--------------- 265 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLP-SVTFVG--------------- 265 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC-CHHHHH---------------
Confidence 999999999887776542 1111111111111110 0111111111111111100 000010
Q ss_pred HHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHH---HhhhcHHHHHHHHHhhhhcC
Q 046930 507 YMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQY---LCLNDVTNALLFIKNMKEIS 583 (965)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~~~~~~ 583 (965)
.+............+.......+........+.... ...+++++|+..|++..+.+
T Consensus 266 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 266 ---------------------NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred ---------------------HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 111000000000000000000000011111111111 12245666666666655432
Q ss_pred ccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 046930 584 STVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVI 663 (965)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 663 (965)
. ..+....+++.++..+...|++++|+..|+++++..+ .+..+|..++
T Consensus 325 ~-------------------------------~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la 372 (615)
T TIGR00990 325 K-------------------------------LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRA 372 (615)
T ss_pred C-------------------------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHH
Confidence 1 2234577888999999999999999999999998743 2566888999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 046930 664 HSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLE 743 (965)
Q Consensus 664 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 743 (965)
.++...|++++|+..|+++++.+ +.+..++..+..++...|++++|+..|++.++.. +.+...+..++.++.+.|+++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998864 3347888899999999999999999999999862 446778889999999999999
Q ss_pred HHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChH-------HHHHHHHHHh-cCCCHHH
Q 046930 744 EAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFL-------GFLYLVKGLC-TKGRMEE 814 (965)
Q Consensus 744 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~-~~g~~~e 814 (965)
+|+..|++++.. .| +...++.++.++...|++++|++.|+++++ +.|+.. .+...+..+. ..|++++
T Consensus 451 eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 451 SSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999874 56 467899999999999999999999999976 444321 1122222333 4799999
Q ss_pred HHHHHHHHHhcCcchhhhhccccccccc-cHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q 046930 815 ARSILREMLQSKSVLELINRVDIEVESE-SVLNFLISLCEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 815 A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 870 (965)
|...++++++ ..|+.. .+..++..+...|++++|++.|++....
T Consensus 527 A~~~~~kAl~------------l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 527 AENLCEKALI------------IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHh------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999988 445443 4666788889999999999999987544
No 19
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=1.5e-18 Score=183.83 Aligned_cols=667 Identities=14% Similarity=0.087 Sum_probs=402.8
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
....+ ...|++++|..++.+++++. |.....|..|+.+|-++|+.+++...+-.+...+ |.+...|..++....
T Consensus 145 eAN~l-farg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 145 EANNL-FARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHH
Confidence 33444 34599999999999999987 5577889999999999999999999998888888 788899999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT 175 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (965)
.+|+++.|.-+|.++++.. |++......-...|-+.|+...|...|.++....+..|.. ...
T Consensus 219 ~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e----------------r~~ 280 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE----------------RIE 280 (895)
T ss_pred hcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH----------------HHH
Confidence 9999999999999999987 7888888888889999999999999999999865311100 011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH------
Q 046930 176 VSYTILLDGFSKEGTIEKAVGILNKMIED-RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVY------ 248 (965)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------ 248 (965)
..--..+..+...++-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+|...+
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 22233456677778889999999988873 22335566788888999999999999888877652222221111
Q ss_pred --------------------HHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcchHHHHHcCC
Q 046930 249 --------------------ATLIDGVCRRGDLDCAFRLLEDMEKKGIKP--SIVTYNTIINGLCKVGRTSDAEEVSKGI 306 (965)
Q Consensus 249 --------------------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 306 (965)
..+.-++.+....+....+........+.| +...+.-+..++...|++..|..++..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 122334445555555555555555554322 3456777777888888888888777544
Q ss_pred -----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-------
Q 046930 307 -----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEM------- 374 (965)
Q Consensus 307 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 374 (965)
..+...|..++.+|...|.++.|++.|+.++... +.+.-.-..|...+-+.|+.++|.+.+..+..-
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 2356677778888888888888888888777654 223445556666777778888888777775421
Q ss_pred -CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH
Q 046930 375 -NLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHK 453 (965)
Q Consensus 375 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 453 (965)
...|+..........+...|+.++=+..-.+++..... ...+ + .+..++... .....+..-......
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~-----~~~~--f---~~~~k~r~~--~~~~~~~~~~~~~~~ 587 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLK-----KRYI--F---PRNKKKRRR--AIAGTTSKRYSELLK 587 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHh--c---chHHHHHHH--hhccccccccchhHH
Confidence 22344445555566666667666544333333321000 0000 0 000000000 000000111112222
Q ss_pred HHHHHHHHcCChhhHHH--------HHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHH
Q 046930 454 IILQATFAKGGVGGVLN--------FVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSI 525 (965)
Q Consensus 454 ~~l~~~~~~g~~~~a~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 525 (965)
....+..+.++...... .......+..+..-..+..++..+++.++.++|..+...+.....-
T Consensus 588 ~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f--------- 658 (895)
T KOG2076|consen 588 QIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF--------- 658 (895)
T ss_pred HHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh---------
Confidence 22222222222111110 0000111111111133444555666666666666666555442100
Q ss_pred HHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHH
Q 046930 526 LKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDV 605 (965)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 605 (965)
+
T Consensus 659 --------------------------------------------------~----------------------------- 659 (895)
T KOG2076|consen 659 --------------------------------------------------F----------------------------- 659 (895)
T ss_pred --------------------------------------------------h-----------------------------
Confidence 0
Q ss_pred HHHHHhhhccCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-C--Ccc-cHHHHHHHHHHHHhcCcHHHHHHHH
Q 046930 606 YKLVMGAEDSLPCMD--VVDYSTIVAALCREGYVNKALDLCAFAKNK-G--ITV-NIVTYNTVIHSLCRQGCFVEAFRLF 679 (965)
Q Consensus 606 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 679 (965)
.+.. -..-+..+.+.+..+++..|.+.++.|+.. + ..| -...|+..++...+.++-.-=...+
T Consensus 660 -----------~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 660 -----------QDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 012244556666778888888888887765 1 011 2345665556665555544444444
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh--cC--------CHHHHHHH
Q 046930 680 DSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPS-TRIYNSFIDGYCK--FG--------QLEEAFKF 748 (965)
Q Consensus 680 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~g--------~~~~A~~~ 748 (965)
..+.......+......-.+.....+.+..|+..|-++... .|+ +.+--.++-++.. .+ .+-+++..
T Consensus 729 ~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 729 MRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred HHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44443221122222233334456788899999988888775 344 3333333333321 11 23455666
Q ss_pred HHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC---------C----hHHHHHHHHHHhcCCCHHH
Q 046930 749 LHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP---------D----FLGFLYLVKGLCTKGRMEE 814 (965)
Q Consensus 749 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---------~----~~~~~~l~~~~~~~g~~~e 814 (965)
+.+..+.-..- ...++-+++.+|-..|-..-|+.+|+++++ +.| + ...-++|.-.|...|+.+.
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~l 884 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQL 884 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHH
Confidence 55554431111 235677899999999999999999999965 432 1 2234558888999999999
Q ss_pred HHHHHHHH
Q 046930 815 ARSILREM 822 (965)
Q Consensus 815 A~~~~~~~ 822 (965)
|.+++++-
T Consensus 885 Arqil~ky 892 (895)
T KOG2076|consen 885 ARQILEKY 892 (895)
T ss_pred HHHHHHhh
Confidence 99988753
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.6e-20 Score=212.00 Aligned_cols=416 Identities=13% Similarity=0.024 Sum_probs=284.6
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.+...+..+ .+.|+++.|+..|.+++... |++..+..++.+|.+.|++++|+..++.+++.+ |.+..+|..++
T Consensus 129 ~~k~~G~~~-~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a 201 (615)
T TIGR00990 129 KLKEKGNKA-YRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD---PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCCHHHHHHHH
Confidence 455677776 78899999999999998754 567789999999999999999999999999998 88899999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCcc-chhhhhhHHhhhh----
Q 046930 92 SGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKF-DVVFYSCWICGQM---- 166 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~i~~~~---- 166 (965)
.+|...|++++|+..|..+...++ .+......++..+.. ..+.......++..+.. ...++..-+....
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 999999999999999988776542 222211222211111 12223333333222110 0000000000000
Q ss_pred ------hhcCCCCC-HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 167 ------VDKGIKPD-TVSYTILLDGF---SKEGTIEKAVGILNKMIEDR-LRP-NLITYTAIIFGFCKKGKLEEAFTVFK 234 (965)
Q Consensus 167 ------~~~~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 234 (965)
......+. ...+..+...+ ...+++++|.+.|++++..+ ..| ....+..+...+...|++++|+..|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00000111 01111111111 22467888899998888764 122 45667778888888899999999998
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCH
Q 046930 235 KVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDV 310 (965)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~ 310 (965)
+..+.. +.+...|..+...+...|++++|...|+++++.... +..++..++..+...|++++|...|+.. |.+.
T Consensus 356 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 356 KSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 888774 344667778888888889999999999888876432 5677888888888888888888877543 5567
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccH-----H-HHH
Q 046930 311 VTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS-----V-TYS 384 (965)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-~~~ 384 (965)
..+..++.++.+.|++++|+..++..++.. +.+...++.+...+...|++++|+..|++..+.....+. . .+.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 777778888888888888888888887654 345677777888888888888888888887765311111 1 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 385 TMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 385 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
..+..+...|++++|+.+++++....|.+..++..++.++.+.|++++|+..|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22223334688888888888888877777778888888888888888888888887764
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.8e-19 Score=203.56 Aligned_cols=336 Identities=12% Similarity=0.075 Sum_probs=229.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
...++..+.+.|++++|..+++.++... |.++.++..++.+....|++++|++.|++++... |.+...+..++.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~---p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA---KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC---CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 4556677888999999999999999888 7888889999999999999999999999999876 6777888899999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
+...|++++|+..++++++.. +.+..++..++.++...|++++|...++.+....+. +
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~---------------------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~ 177 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF---------------------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-R 177 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-C
Confidence 999999999999999998753 245778888888999999999999999988776544 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 210 LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289 (965)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 289 (965)
...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++++...... +...+..+...
T Consensus 178 ~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLA 255 (656)
T ss_pred HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3344333 347888999999999999887653444555555667888899999999999999877433 56777778888
Q ss_pred HHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 290 LCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQ 369 (965)
Q Consensus 290 ~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 369 (965)
+...|++++|. .+|+..++++.... +.+...+..+...+...|++++|...++
T Consensus 256 l~~~G~~~eA~--------------------------~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 256 YYQSGRSREAK--------------------------LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHcCCchhhH--------------------------HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888877531 12333333433332 1233444444444555555555555555
Q ss_pred HchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 370 AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE 442 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (965)
++.+.. +.+..++..++.++...|++++|+..|+++....|.+...+..++.++...|++++|+..|+++++
T Consensus 309 ~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 309 QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444432 222334444444455555555555555555444444433333344444455555555555555444
No 22
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.5e-16 Score=161.75 Aligned_cols=611 Identities=11% Similarity=0.011 Sum_probs=381.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN 140 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 140 (965)
++..+|..++....+.+ |.++..|.+-++.--..|++..|..+..+-.+.. +.+...|...++ ....+.|.
T Consensus 265 ~DikKaR~llKSvretn---P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c--prSeDvWLeaiR----Lhp~d~aK 335 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN---PKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC--PRSEDVWLEAIR----LHPPDVAK 335 (913)
T ss_pred HHHHHHHHHHHHHHhcC---CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC--CchHHHHHHHHh----cCChHHHH
Confidence 57789999999999999 7788889888888889999999999888877654 677778865553 55667777
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGF 220 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 220 (965)
.+.-.+.+.. +.++..|..-+.. ..+...=.+++++.++.- +.++..|...+
T Consensus 336 ~vvA~Avr~~---------------------P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~i-P~sv~LWKaAV--- 387 (913)
T KOG0495|consen 336 TVVANAVRFL---------------------PTSVRLWLKAADL---ESDTKNKKRVLRKALEHI-PRSVRLWKAAV--- 387 (913)
T ss_pred HHHHHHHHhC---------------------CCChhhhhhHHhh---hhHHHHHHHHHHHHHHhC-CchHHHHHHHH---
Confidence 7777777642 2344444433322 234444567778887763 33566665544
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 046930 221 CKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAE 300 (965)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 300 (965)
...+.+.|.-++.++.+.- +.+.. |..++.+..-|+.|.++++...+. ++.+...|.+....--.+|+.+...
T Consensus 388 -elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 -ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred -hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 3356667888888887762 33333 334667778888899999888876 4557778877776666677666665
Q ss_pred HHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCccc-
Q 046930 301 EVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVAN- 379 (965)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 379 (965)
++.. +-+..+...|+..+...|..=...|-..|..-.+..+....+..|+...
T Consensus 461 kii~--------------------------rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 461 KIID--------------------------RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred HHHH--------------------------HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 5542 1112333445555555666556666666666666666666555554332
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 380 -SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 380 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
..+|..-...|.+.+.++-|+.+|..+++..|.....|......--..|..++-..++++++.. ++-....+......
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 2467777777888888888888888888887777778877777777778888888888888775 33344445555556
Q ss_pred HHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhh
Q 046930 459 TFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLI 538 (965)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (965)
....|++..|..++.++.+..|. ...+|-..+...+.+..++.|..+|.+... ..|+...|..-+.-.--.+..+++
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 66668888888888887777776 557888888888999999999999988766 345555555444444444445555
Q ss_pred hhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCC
Q 046930 539 GPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPC 618 (965)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 618 (965)
..+++..++..+.....+..+++.+-+.++++.|...|.+-.+.. |
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c----------------------------------P 716 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC----------------------------------P 716 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC----------------------------------C
Confidence 555555555555444444444444444444444444444322222 1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLI 698 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 698 (965)
..+..|..+...-.+.|.+-.|..+++...-++++ +...|...++.-.+.|+.+.|..+..++++.. +.+...|..-|
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHH
Confidence 23555555555555556666666666666555443 55566666666666666666666666555532 22334444444
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCH
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDM 777 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 777 (965)
....+.++--.+...+++ +.-|+++....+..+-...++++|.+.|.+..+. .|| -.+|..+...+.++|.-
T Consensus 795 ~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCH
Confidence 444444442222222222 2335555555556666666666666666666653 443 34555555555666666
Q ss_pred HHHHHHHHHhH
Q 046930 778 EGALGFFLDFN 788 (965)
Q Consensus 778 ~~A~~~~~~~~ 788 (965)
++-.+++.+..
T Consensus 868 ed~kev~~~c~ 878 (913)
T KOG0495|consen 868 EDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHh
Confidence 66666666553
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.1e-19 Score=205.21 Aligned_cols=335 Identities=12% Similarity=0.048 Sum_probs=252.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
...++... .++|++++|+..+...+... +.++..+..++.+....|++++|+..|+++++.+ |.++.++..++.
T Consensus 45 ~~~~~~~~-~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---P~~~~a~~~la~ 118 (656)
T PRK15174 45 IILFAIAC-LRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---VCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHH-HhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---CCChHHHHHHHH
Confidence 44455554 79999999999999988866 4556677778888889999999999999999999 889999999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCC
Q 046930 93 GFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIK 172 (965)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (965)
++...|++++|+..|++++... |.+...+..++.++...|++++|...++++....+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P--------------------- 175 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP--------------------- 175 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC---------------------
Confidence 9999999999999999999976 67788999999999999999999999998876532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
.+...+..+ ..+...|++++|...++.+++..+.++...+..++.++...|++++|+..++++.+.. +.+...+..+.
T Consensus 176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg 253 (656)
T PRK15174 176 PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLG 253 (656)
T ss_pred CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 233344333 3478899999999999999887554455556666788999999999999999999876 55778888899
Q ss_pred HHHHhcCCHhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhH
Q 046930 253 DGVCRRGDLDC----AFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNG 328 (965)
Q Consensus 253 ~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (965)
..+...|++++ |...|++.....+. +...+..++..+...|++++|...+
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l------------------------- 307 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLL------------------------- 307 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH-------------------------
Confidence 99999999986 78999998876432 5566777777777777666666554
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046930 329 ILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS-VTYSTMIDGYCKLGRIEEALEIFDELR 407 (965)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (965)
+++.... +.+...+..+...+.+.|++++|...|+.+.+.+ |+. ..+..++.++...|+.++|+..|+++.
T Consensus 308 -----~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 308 -----QQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred -----HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444332 2234445555556666666666666666665543 332 223334455566666666666666666
Q ss_pred hcCCC
Q 046930 408 RMSIS 412 (965)
Q Consensus 408 ~~~~~ 412 (965)
+..|.
T Consensus 380 ~~~P~ 384 (656)
T PRK15174 380 QARAS 384 (656)
T ss_pred HhChh
Confidence 55444
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.8e-20 Score=203.06 Aligned_cols=258 Identities=16% Similarity=0.154 Sum_probs=183.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC----HhhHHHHH
Q 046930 623 DYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS----EVSYATLI 698 (965)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~ 698 (965)
.+..++..|.+.|++++|..+|+++.+.. +++..++..++.++.+.|++++|++.++.+.+.+..+. ...+..++
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34455566666667777777777666542 23556677777777777777777777777776442221 12345566
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcCC
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVINGFCQKGD 776 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 776 (965)
..+...|++++|.+.|+++++.. +.+...+..++.++.+.|++++|.+.++++.+. .|+ ..+++.++.+|...|+
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCC
Confidence 77778888888888888888752 334667778888888899999999999888874 443 3567788888889999
Q ss_pred HHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhh---
Q 046930 777 MEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCE--- 853 (965)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 853 (965)
+++|++.++++.+ ..|+...+..++..+.+.|++++|..+++++++ ..|+...+..++..+..
T Consensus 265 ~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~------------~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 265 EAEGLEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR------------RHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH------------hCcCHHHHHHHHHHhhhccC
Confidence 9999999998866 467766677788888899999999999998887 45566566666655432
Q ss_pred cCcHHHHHHHHHHHhhccCCCccc--chhhhhhhhhhhhhhhccccc
Q 046930 854 QGSILEAIAILDEIGYMLFPTQRF--GTDRAIETQNKLDECESLNAV 898 (965)
Q Consensus 854 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 898 (965)
.|+.++|+.+++++..+....++. |.+-++-...-.+.|++||+.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c~~c~~~ 377 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFTARTLYWHCPSCKAW 377 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCEECCCCCCCCccceeECcCCCCc
Confidence 568889999998887664333443 333446666667777777663
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=5.8e-19 Score=204.28 Aligned_cols=410 Identities=9% Similarity=0.009 Sum_probs=300.6
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.++....-.+..+ .-.|++++|+..+..+.... +.+...+..++.++...|++++|+..|+++++.. |.++.
T Consensus 11 ~~~~~~~~~d~~~ia-~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~---P~~~~ 84 (765)
T PRK10049 11 SALSNNQIADWLQIA-LWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE---PQNDD 84 (765)
T ss_pred cCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH
Confidence 355555555555554 67899999999999977533 5567778999999999999999999999999998 88899
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
++..++.++...|++++|+..+++++... |.+.. +..++.++...|+.++|+..++++++..|
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-------------- 147 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-------------- 147 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------
Confidence 99999999999999999999999999876 67777 88999999999999999999999998642
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL------ITYTAIIFGFC-----KKGKL---EEAFT 231 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~ 231 (965)
.+...+..++.++...+..++|+..++.+.. .|+. .....++.... ..+++ ++|+.
T Consensus 148 -------~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 148 -------QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred -------CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 4566677788888889999999999987664 2221 11222233222 12234 77888
Q ss_pred HHHHHHHc-CCCCCHh-HH----HHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcchHHHHHc
Q 046930 232 VFKKVEDL-GLVADEF-VY----ATLIDGVCRRGDLDCAFRLLEDMEKKGIK-PSIVTYNTIINGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 232 ~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 304 (965)
.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHH
Confidence 88888854 1122221 11 11133456779999999999999887543 332 23335778888999999988876
Q ss_pred CC---CC-C----HHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHH
Q 046930 305 GI---LG-D----VVTYSTLLHGYIEEDNVNGILETKQRLEEAGI-----------QMD---IVMCNILIKALFMVGALE 362 (965)
Q Consensus 305 ~~---~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~ 362 (965)
.+ .| + ......+..++...+++++|+..++.+....+ .|+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 43 11 1 23455566677888888888888888776532 122 124455666777788888
Q ss_pred HHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 363 DARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE 442 (965)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (965)
+|+.+++++.... +.+...+..++..+...|++++|++.++++....|.+...+...+..+...|++++|..+++++++
T Consensus 377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888877654 455667777788888888888888888888888887777888888888888888888888888877
Q ss_pred CCCCCCHHhH
Q 046930 443 KGLSLYVGMH 452 (965)
Q Consensus 443 ~~~~~~~~~~ 452 (965)
. .|+....
T Consensus 456 ~--~Pd~~~~ 463 (765)
T PRK10049 456 R--EPQDPGV 463 (765)
T ss_pred h--CCCCHHH
Confidence 5 5555443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=3.9e-18 Score=197.43 Aligned_cols=405 Identities=10% Similarity=-0.017 Sum_probs=296.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.++....-.+++....|+.++|++++......+ |....++..++.++...|++++|++.|++++... |.++..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~ 86 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQ 86 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 4566677778888999999999999999998766 6778889999999999999999999999999876 6778888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..++.++...|++++|+..++++++.. +.+.. +..+..++...|++++|+..++++++
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~---------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA---------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999998863 24556 88889999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHH-----hcCCH---hHHHHHHH
Q 046930 204 DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADE------FVYATLIDGVC-----RRGDL---DCAFRLLE 269 (965)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~ 269 (965)
..+. +...+..+..++...+..+.|+..++.+.. .|+. .....++.... ..+++ ++|++.++
T Consensus 145 ~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 145 RAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 8655 677777788888899999999999987664 2221 11222222222 12234 77888888
Q ss_pred HHHHC-CCCCCHH-HH----HHHHHHHHhcCCcchHHHHHcCCCC-----CHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 046930 270 DMEKK-GIKPSIV-TY----NTIINGLCKVGRTSDAEEVSKGILG-----DVVTYSTLLHGYIEEDNVNGILETKQRLEE 338 (965)
Q Consensus 270 ~~~~~-g~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (965)
.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.. .......+...|...|++++|+..++.+..
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 88854 2223221 11 1113345677899999988876521 111233357788899999999999998876
Q ss_pred cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-----------ccc---HHHHHHHHHHHHHcCCHHHHHH
Q 046930 339 AGIQM---DIVMCNILIKALFMVGALEDARALYQAMPEMNL-----------VAN---SVTYSTMIDGYCKLGRIEEALE 401 (965)
Q Consensus 339 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~ 401 (965)
..... .......+..++...|++++|..+++.+.+... .|+ ......++..+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 54221 134556667778889999999999988876531 122 2345667778888999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHHcCChhhHHHHHHHHHhccc
Q 046930 402 IFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG-MHKIILQATFAKGGVGGVLNFVYRIENLRS 480 (965)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~ 480 (965)
.++++....|.+...+..++..+...|++++|++.+++++.. .|+.. ........+...|++++|+..++++....|
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999888889999999999999999999999999998876 45543 333333344444444444444444444444
Q ss_pred c
Q 046930 481 E 481 (965)
Q Consensus 481 ~ 481 (965)
+
T Consensus 459 d 459 (765)
T PRK10049 459 Q 459 (765)
T ss_pred C
Confidence 3
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=7.7e-19 Score=190.38 Aligned_cols=307 Identities=12% Similarity=0.053 Sum_probs=176.3
Q ss_pred HHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCccc---HHHHHHHHHHHHHc
Q 046930 317 LHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVAN---SVTYSTMIDGYCKL 393 (965)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 393 (965)
+..+...|++++|+..|.++.+.+ +.+..++..++..+...|++++|..+++.+......++ ..++..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334455566666666666666653 23445566666666667777777777666655321111 13455666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHH
Q 046930 394 GRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVY 473 (965)
Q Consensus 394 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~ 473 (965)
|++++|..+|+++.+..+.+..++..++.++...|++++|++.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 7777777777766666555666666666666666666666666666655421111100
Q ss_pred HHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCc
Q 046930 474 RIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVE 553 (965)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (965)
T Consensus 179 -------------------------------------------------------------------------------- 178 (389)
T PRK11788 179 -------------------------------------------------------------------------------- 178 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHh
Q 046930 554 PMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCR 633 (965)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (965)
....+..++..+.+
T Consensus 179 ------------------------------------------------------------------~~~~~~~la~~~~~ 192 (389)
T PRK11788 179 ------------------------------------------------------------------IAHFYCELAQQALA 192 (389)
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHHHh
Confidence 01122334444555
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHH
Q 046930 634 EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKL 713 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 713 (965)
.|++++|+..|+++.+.. +.+...+..++..+.+.|++++|+++|+++.+.+......++..++.+|...|++++|.+.
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 556666666666555542 2234455556666666666666666666666533111134455666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHHhHhC
Q 046930 714 FDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQ---KGDMEGALGFFLDFNTK 790 (965)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 790 (965)
++++.+. .|+...+..++..+.+.|++++|...++++.+. .|+..+++.++..+.. .|+.++++..++++.+.
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 6666653 344445566666666677777777777666653 5666666655555443 34666666666666655
Q ss_pred CCCCChH
Q 046930 791 GVSPDFL 797 (965)
Q Consensus 791 ~~~p~~~ 797 (965)
++.|++.
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 5544443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.2e-16 Score=180.17 Aligned_cols=452 Identities=12% Similarity=0.018 Sum_probs=304.4
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHH
Q 046930 312 TYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYC 391 (965)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (965)
+....+-...+.|+++.|+..|+++.+..+......+ .++..+...|+.++|+..+++..... +........++..+.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~ 113 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence 3344445566788888888888888877533222333 77777888899999999999888321 233444445567888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHH
Q 046930 392 KLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNF 471 (965)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~ 471 (965)
..|++++|+++|+++.+..|.++.++..++..+...++.++|+..++++... .|+...+..+...+...++..+|+..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 8899999999999999999888888888888889999999999999998876 55555543333333333444446666
Q ss_pred HHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCC
Q 046930 472 VYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGL 551 (965)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (965)
++++....|+.. .++..+..++.+.|-...|.++..+-.. ..+...+..+
T Consensus 192 ~ekll~~~P~n~-e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l-------------------------- 241 (822)
T PRK14574 192 SSEAVRLAPTSE-EVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQL-------------------------- 241 (822)
T ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHH--------------------------
Confidence 666666665543 2333444555566666666554443111 0000000000
Q ss_pred CchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhc---cCCCCc---hhhHH
Q 046930 552 VEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAED---SLPCMD---VVDYS 625 (965)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~---~~~~~ 625 (965)
..+.|....+.....+.+..... --.+.|+.-++.+.+ ..|+.. ..+..
T Consensus 242 ----------------~~~~~a~~vr~a~~~~~~~~~r~---------~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~ 296 (822)
T PRK14574 242 ----------------ERDAAAEQVRMAVLPTRSETERF---------DIADKALADYQNLLTRWGKDPEAQADYQRARI 296 (822)
T ss_pred ----------------HHHHHHHHHhhcccccccchhhH---------HHHHHHHHHHHHHHhhccCCCccchHHHHHHH
Confidence 00011111111000000000000 011223333333333 223221 12223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-----CCCHhhHHHHHHH
Q 046930 626 TIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM-----VPSEVSYATLIYN 700 (965)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~ 700 (965)
..+-++...|+..++++.|+.+...+.+....+-..++++|...+++++|+.+|.++..... .++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 55667888999999999999999888766677888999999999999999999999977431 1233335778889
Q ss_pred HHccCChHHHHHHHHHHHHC-C----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHH
Q 046930 701 LCKEGQLLDAKKLFDRMVLK-G----------FKPS---TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVS 765 (965)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~~~-~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 765 (965)
|..++++++|..+++++.+. . -.|| ......++..+...|++.+|++.++++... .| |.....
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~ 454 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRI 454 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999999999873 1 0122 234456788899999999999999999884 67 678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 766 AVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 766 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
.++..+...|.+.+|.+.++.+. .+.|+... ...++.++...|++++|....+.+++..
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~--~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVE--SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHh--hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999998874 46887655 7779999999999999999999999843
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=4.4e-17 Score=183.72 Aligned_cols=439 Identities=11% Similarity=0.043 Sum_probs=331.2
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..|...+.. .++|+++.|+..|+++++..+ .++.....++..+...|+.++|+..+++++... |.....+..+
T Consensus 36 ~~y~~aii~--~r~Gd~~~Al~~L~qaL~~~P--~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~---n~~~~~llal 108 (822)
T PRK14574 36 TQYDSLIIR--ARAGDTAPVLDYLQEESKAGP--LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM---NISSRGLASA 108 (822)
T ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHhhCc--cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC---CCCHHHHHHH
Confidence 355555554 489999999999999998663 332222388888899999999999999999443 5556666666
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
+..|...|++++|+++|+++++.. |.++..+..++..+...++.++|++.++++.+.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------------------- 165 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--------------------- 165 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---------------------
Confidence 889999999999999999999987 677788888888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH--
Q 046930 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVY-- 248 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-- 248 (965)
.|+...+..++..+...++..+|++.++++.+..+. +...+..+..++.+.|-...|.++..+-...- .+...-+
T Consensus 166 -dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~ 242 (822)
T PRK14574 166 -DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLE 242 (822)
T ss_pred -CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHH
Confidence 356555655554555567777799999999998644 77888889999999999999998777643221 1111111
Q ss_pred ----HHHHHHH---H--hcCC---HhHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCcchHHHHHcCCC---
Q 046930 249 ----ATLIDGV---C--RRGD---LDCAFRLLEDMEKK-GIKPSI-----VTYNTIINGLCKVGRTSDAEEVSKGIL--- 307 (965)
Q Consensus 249 ----~~l~~~~---~--~~g~---~~~A~~~~~~~~~~-g~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~--- 307 (965)
..++..- . ...+ .+.|+.-++.+... +..|.. ....-.+.++...|++.++++.++.++
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 1111000 0 1112 34455566665542 222322 122344557788999999999987663
Q ss_pred --CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCC----
Q 046930 308 --GDVVTYSTLLHGYIEEDNVNGILETKQRLEEAG-----IQMDIVMCNILIKALFMVGALEDARALYQAMPEMNL---- 376 (965)
Q Consensus 308 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 376 (965)
-...+...++++|...+.+++|+.++..+.... .+++......|..++...+++++|..+++.+.+...
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 134467788999999999999999999997754 233455567899999999999999999999977321
Q ss_pred -------cccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046930 377 -------VANS---VTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLS 446 (965)
Q Consensus 377 -------~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (965)
.||. .....++..+.-.|++.+|++.++++....|.|......++..+...|.+..|...++.+... .
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~ 480 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--A 480 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--C
Confidence 1222 355667888899999999999999999999999999999999999999999999999877765 4
Q ss_pred CC-HHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccch
Q 046930 447 LY-VGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYD 484 (965)
Q Consensus 447 ~~-~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (965)
|+ ..+......+....+++.+|..+...+.+..|+...
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 44 455566677778889999999999999999888764
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=8.4e-14 Score=142.15 Aligned_cols=611 Identities=13% Similarity=0.067 Sum_probs=452.9
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhh
Q 046930 23 KRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPEL 102 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 102 (965)
.-+|...|.-+++.+.+..+ ..+..|..-++.--..|++..|..+...-.+.. |.+.++|..-+ +..-.+.
T Consensus 263 dl~DikKaR~llKSvretnP--~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c---prSeDvWLeai----RLhp~d~ 333 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNP--KHPPGWIASARLEEVAGKLSVARNLIMKGCEEC---PRSEDVWLEAI----RLHPPDV 333 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC---CchHHHHHHHH----hcCChHH
Confidence 34567789888888777664 445556666666778899999999999888877 78888887654 4567788
Q ss_pred HHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH
Q 046930 103 AIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL 182 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 182 (965)
|..+.-.++... |.++..|......- .+...=..+++++++. ++.++..|-...
T Consensus 334 aK~vvA~Avr~~--P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~---------------------iP~sv~LWKaAV 387 (913)
T KOG0495|consen 334 AKTVVANAVRFL--PTSVRLWLKAADLE---SDTKNKKRVLRKALEH---------------------IPRSVRLWKAAV 387 (913)
T ss_pred HHHHHHHHHHhC--CCChhhhhhHHhhh---hHHHHHHHHHHHHHHh---------------------CCchHHHHHHHH
Confidence 888988888764 67777776555432 2233334577777765 234455555433
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHh
Q 046930 183 DGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLD 262 (965)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 262 (965)
...+.+.|.-++.++.+. ++.+...| .+|.+..-|+.|..++..+.+. ++.+..+|.+....--..|+.+
T Consensus 388 ----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 388 ----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred ----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHH
Confidence 345666688888888875 23244444 3556667889999999998875 5777888887777667789999
Q ss_pred HHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC-------CCCHHHHHHHHHHhhhcCChhHHHH
Q 046930 263 CAFRLLEDME----KKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI-------LGDVVTYSTLLHGYIEEDNVNGILE 331 (965)
Q Consensus 263 ~A~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (965)
...+++.+-+ ..|+..+...|..=...|-..|..-.+..+...+ .....+|..-...+.+.+.++-|..
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 8888877653 4688888888888888888888776666654422 2455688888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 046930 332 TKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSI 411 (965)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 411 (965)
+|...++.. +.+...|......--..|..++-..+|+++...- +.....|...+..+-..|+...|..++..+.+..|
T Consensus 538 Vya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 538 VYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 999888764 4566777777776667899999999999998753 34445666777778889999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHH
Q 046930 412 SSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVI 491 (965)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (965)
.+...|..-+..-....+++.|..+|.+.... .|+...+..-...-...+..++|.+++++..+..|+.. .+|-.++
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~-Kl~lmlG 692 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH-KLWLMLG 692 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH-HHHHHHh
Confidence 99999999999999999999999999998864 67777777777777778999999999988888777654 6788888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHH
Q 046930 492 SFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTN 571 (965)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (965)
..+-+.++.+.|.+.|..-.+.- |. ..|.+..+...--
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~c--P~---------------------------------~ipLWllLakleE------- 730 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKC--PN---------------------------------SIPLWLLLAKLEE------- 730 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccC--CC---------------------------------CchHHHHHHHHHH-------
Confidence 88999999999999997755432 22 2222222222222
Q ss_pred HHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046930 572 ALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKG 651 (965)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 651 (965)
+.|....|..+++...-.. |.+...|...+.+-.+.|+.+.|..+..++++.
T Consensus 731 --------------------------k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe- 782 (913)
T KOG0495|consen 731 --------------------------KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE- 782 (913)
T ss_pred --------------------------HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 2233344444444433332 457999999999999999999999999999887
Q ss_pred CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHH
Q 046930 652 ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNS 731 (965)
Q Consensus 652 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 731 (965)
++.+...|..-+....+-++-..+...+++. ..|+.....+...+-...++++|.+.|.+.++.+ +.+-.+|.-
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~ 856 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAW 856 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHH
Confidence 4447777887777776666655555544443 3566677777888888899999999999999863 445678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCh
Q 046930 732 FIDGYCKFGQLEEAFKFLHDLKINCLEPDK 761 (965)
Q Consensus 732 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 761 (965)
+...+...|.-++-.+++.+... ..|..
T Consensus 857 fykfel~hG~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhc--cCCCC
Confidence 88888999988888888888776 36653
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.6e-16 Score=152.81 Aligned_cols=497 Identities=14% Similarity=0.106 Sum_probs=254.5
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWI 162 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i 162 (965)
...+++.++.-|..+..+.+|+..|+-+++...+|..-..-..++.++.+.+.+.+|++.|+-++..-|..+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-------- 271 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-------- 271 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc--------
Confidence 345667777777777778888888877776654443333445677777777788888887777665422111
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 046930 163 CGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV 242 (965)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 242 (965)
....+...+.+...+.+.|.++.|+..|+...+. .||..+-..|+-++..-|+.++..+.|..|+.....
T Consensus 272 --------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 272 --------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred --------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCC
Confidence 0111334555555677778888888888777664 456555444444555567777777777777755333
Q ss_pred CCHhHH--------HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC-CCCHHHH
Q 046930 243 ADEFVY--------ATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI-LGDVVTY 313 (965)
Q Consensus 243 ~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~ 313 (965)
+|..-| ..|+.--.+. ..++.|.+.... +..-+ ++. +.++...+ .|+..+
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~n-------d~lk~~ek~~ka-~aek~--i~t----------a~kiiapvi~~~fa~- 400 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKN-------DHLKNMEKENKA-DAEKA--IIT----------AAKIIAPVIAPDFAA- 400 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhh-------HHHHHHHHhhhh-hHHHH--HHH----------HHHHhccccccchhc-
Confidence 332211 1111110000 011111111000 00000 000 00000000 011000
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHH-
Q 046930 314 STLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCK- 392 (965)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 392 (965)
. .+-.++.++.-....+..+ .-..-...+.+.|+++.|+++++-+.+.+-+..+.+-+.|...+.-
T Consensus 401 ---g--------~dwcle~lk~s~~~~la~d--lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq 467 (840)
T KOG2003|consen 401 ---G--------CDWCLESLKASQHAELAID--LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ 467 (840)
T ss_pred ---c--------cHHHHHHHHHhhhhhhhhh--hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh
Confidence 0 0000000000000000000 0011122356777777777777766654422223333333333332
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHH
Q 046930 393 -LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNF 471 (965)
Q Consensus 393 -~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~ 471 (965)
-.++..|.+.-+..+..+.-+..+...-+......|++++|.+.|++.+..........|+
T Consensus 468 ggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn------------------ 529 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN------------------ 529 (840)
T ss_pred cccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH------------------
Confidence 3456777777777776666677777766666667788888888888877653222222222
Q ss_pred HHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCC
Q 046930 472 VYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGL 551 (965)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (965)
++..+.+.|++++|+..|-++..- --.
T Consensus 530 ------------------iglt~e~~~~ldeald~f~klh~i-----------------------------------l~n 556 (840)
T KOG2003|consen 530 ------------------IGLTAEALGNLDEALDCFLKLHAI-----------------------------------LLN 556 (840)
T ss_pred ------------------hcccHHHhcCHHHHHHHHHHHHHH-----------------------------------HHh
Confidence 223345667777777776553220 000
Q ss_pred CchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHH
Q 046930 552 VEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAAL 631 (965)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (965)
...++.+++..|....+...|++++.+.. . +.|.|+.....|+..|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~---------------------------------s-lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQAN---------------------------------S-LIPNDPAILSKLADLY 602 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhc---------------------------------c-cCCCCHHHHHHHHHHh
Confidence 11222333333333333333333333221 1 1234566667777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHccCChHHH
Q 046930 632 CREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY-NLCKEGQLLDA 710 (965)
Q Consensus 632 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A 710 (965)
-+.|+-..|...+-+--.- ++.+..+...|...|....-+++|+.+|+++.- +.|+..-|..++. ++.+.|++.+|
T Consensus 603 dqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHH
Confidence 7777766666655443332 444666666666666666667777777766544 4566666666553 34456777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 046930 711 KKLFDRMVLKGFKPSTRIYNSFIDGYCKFG 740 (965)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 740 (965)
+++|+...++ ++.|.....-|+.++...|
T Consensus 680 ~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 680 FDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 7777766654 5666666666666665555
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4e-16 Score=153.52 Aligned_cols=426 Identities=16% Similarity=0.102 Sum_probs=263.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 046930 348 CNILIKALFMVGALEDARALYQAMPEMNLVAN-SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCK 426 (965)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (965)
+-...+-|.+.|.+++|+++|...++.. |+ +..|.....+|...|+|++.++...+.++..|..+.++..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 3445566778888888888888888753 66 67777888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccch-hHHHHHHHHHH---------h
Q 046930 427 SGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYD-IICNDVISFLC---------K 496 (965)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~ 496 (965)
.|++++|+.-..-..-.+--.+..+ ..++.-..+.-....+.+.++ ....|..++ .........+. +
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~Lkk~a~~ka~e~~k--~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASI-EPMAERVLKKQAMKKAKEKLK--ENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchh-HHHHHHHHHHHHHHHHHHhhc--ccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 8888877654433321111111111 111111110000001111111 001111111 00000000000 0
Q ss_pred cCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHH
Q 046930 497 RGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFI 576 (965)
Q Consensus 497 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 576 (965)
...-+.+..-.-+.+..+ .++ .+..+.+.+.+-..... ...+.+.+++-++..
T Consensus 273 ~~ksDa~l~~~l~~l~~~---~~e-------------~Y~~a~~~~te~~~~~~-----------~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKG---LEE-------------GYLKAYDKATEECLGSE-----------SSLSVNEIDAELEYM 325 (606)
T ss_pred CccchhhHHHHHHHHHhh---Cch-------------hHHHHHHHHHHHhhhhh-----------hhccccccchhHHHH
Confidence 000111111100000000 000 01111111110000000 000000011110000
Q ss_pred HhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH
Q 046930 577 KNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNI 656 (965)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 656 (965)
-. .+.......+..|+...|...++......|. +...|-.+..+|....+.++-...|+.....++. |+
T Consensus 326 A~---------al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~ 394 (606)
T KOG0547|consen 326 AE---------ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NP 394 (606)
T ss_pred HH---------HHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CC
Confidence 00 0001112444556667777777766655554 3555888899999999999999999999988654 77
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDG 735 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 735 (965)
.+|..-+..+.-.+++++|+.-|++.++.+ |. ...|..+..+..+.++++++...|++.+++ ++.-+..|+..+.+
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAei 471 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEI 471 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHH
Confidence 889889999999999999999999999954 54 788899998889999999999999999986 77788999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCh-------h--HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHH
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEPDK-------F--TVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKG 805 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p~~-------~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~ 805 (965)
+..++++++|.+.|...++. .|+. . +.-.++ .+.-.+++..|+++++++++ ++|.... +..|+..
T Consensus 472 LtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQF 546 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHH
Confidence 99999999999999999884 6641 1 112222 22244899999999999965 8887766 8999999
Q ss_pred HhcCCCHHHHHHHHHHHHh
Q 046930 806 LCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 806 ~~~~g~~~eA~~~~~~~~~ 824 (965)
...+|+.++|+++|++...
T Consensus 547 ~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999876
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=2.5e-16 Score=152.93 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=209.5
Q ss_pred hHHHHHHHHHHhhhcHHHHHHHHHhhhhcCcccc--chHHHHHH-HH-hcCCHHHHHHHHHhhhccCCCCchhhHHHHHH
Q 046930 554 PMISKFLVQYLCLNDVTNALLFIKNMKEISSTVT--IPVNVLKK-LL-KAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVA 629 (965)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 629 (965)
+.-...+..++..|+++.|++.++-+........ .+.++... ++ ...+..+|.+..+..... ..-++.+...-+.
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn 498 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGN 498 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCc
Confidence 3444567788899999999999887765544332 23444442 23 344567777766554322 2223444444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHH
Q 046930 630 ALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709 (965)
Q Consensus 630 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 709 (965)
.-...|++++|.+.|++.+..... -......++.++...|++++|++.|-++... +..+..+...+...|....+..+
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 556679999999999999876322 1234445667888999999999999887653 23567888889999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 710 AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 710 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
|++++.+.... ++.|+.+..-|++.|-+.|+-.+|.+.+-.--.. ++-+..+...|+.-|....-+++++.+|+++
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka-- 652 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA-- 652 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 99999998875 5678999999999999999999999886555442 4447888889999899999999999999998
Q ss_pred CCCCCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcC
Q 046930 790 KGVSPDFLGFLYLVKGL-CTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQG 855 (965)
Q Consensus 790 ~~~~p~~~~~~~l~~~~-~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 855 (965)
.=++|+...|..++..| .+.|++.+|++.|+..-.+++ -+.+++.-|+......|
T Consensus 653 aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-----------edldclkflvri~~dlg 708 (840)
T KOG2003|consen 653 ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-----------EDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHhcccc
Confidence 44899999988766655 579999999999999987643 24555555555444433
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.2e-12 Score=124.97 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHhhHHHHHH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERID-MVPSEVSYATLIY 699 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~ 699 (965)
..++..-|..-.+.+++|....+|++.++-++. |..+|......-...|+.+.|..+|.-+++.. +......|-+.++
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 455566666667778888888888888887544 77788888877778888888888888887632 2223455666666
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046930 700 NLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFID 734 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 734 (965)
.=...|.++.|..+|+++++. .+-..+|..++.
T Consensus 516 FEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 516 FEIEEGEFEKARALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred hhhhcchHHHHHHHHHHHHHh--cccchHHHhHHH
Confidence 667788888888888888874 344446666654
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.7e-12 Score=126.29 Aligned_cols=437 Identities=11% Similarity=0.050 Sum_probs=271.2
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhh
Q 046930 246 FVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYI 321 (965)
Q Consensus 246 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~ 321 (965)
..|....+-=...+++..|..+|+..+..... +...|...+.+-.++..+..|..+++.. |.-...|...+..--
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33443333334456666677777777665432 5566666666666777777777766543 344455666666666
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 046930 322 EEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALE 401 (965)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (965)
..|++..|.++|++..+. .|+...|++.+..-.+-+.++.|..++++.+-. .|+..+|...+..-.++|....|..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 778888888888887764 688889999998888888899999999988774 4888888888888888999999999
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHHcCChhhHHHHHHHH
Q 046930 402 IFDELRRMSIS---SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG---MHKIILQATFAKGGVGGVLNFVYRI 475 (965)
Q Consensus 402 ~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~g~~~~a~~~~~~~ 475 (965)
+|..+.+.... +...+...+..-.++..++.|..+|+-.++. -|... .+..+...=-+-|+..++.+.+-.-
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99888876322 2334444444445667788888888888775 22221 1111111100111111111111000
Q ss_pred HhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchH
Q 046930 476 ENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPM 555 (965)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (965)
=.--|+..++
T Consensus 307 ---------------------------Rk~qYE~~v~------------------------------------------- 316 (677)
T KOG1915|consen 307 ---------------------------RKFQYEKEVS------------------------------------------- 316 (677)
T ss_pred ---------------------------hhhHHHHHHH-------------------------------------------
Confidence 0000111111
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcC
Q 046930 556 ISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREG 635 (965)
Q Consensus 556 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (965)
..|-|..+|...+......|
T Consensus 317 ------------------------------------------------------------~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 317 ------------------------------------------------------------KNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred ------------------------------------------------------------hCCCCchHHHHHHHHHHhcC
Confidence 11345666777777777777
Q ss_pred CHHHHHHHHHHHHhcCCcccHH--HHHHHH-----HHH---HhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----
Q 046930 636 YVNKALDLCAFAKNKGITVNIV--TYNTVI-----HSL---CRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNL---- 701 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~-----~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---- 701 (965)
+.+...++|+.++.. ++|-.. .|...+ .++ ....+.+.+.++|+..++. ++....||.-+--.|
T Consensus 337 ~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 777777888777765 444221 122111 111 2456777788888877772 222345555443333
Q ss_pred HccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 046930 702 CKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGA 780 (965)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 780 (965)
.++.++..|.+++..++ |..|-..++...+..-.+.+++|....+|++.++ ..| |..+|...+..=...|+.+.|
T Consensus 415 IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHH
Confidence 46677788888887777 4567777777777777778888888888888877 356 556777777666777888888
Q ss_pred HHHHHHhHhCCCCCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 781 LGFFLDFNTKGVSPDFL-GFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 781 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
..+|+-+++.....-+. .+...+.-=...|.++.|..+|+++++.
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 88888776532111112 2444454445678888888888888774
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.9e-13 Score=129.57 Aligned_cols=161 Identities=13% Similarity=0.088 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046930 658 TYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGY 736 (965)
Q Consensus 658 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 736 (965)
|.-.+++.|...++.++|+.+|+++++.+ |. ...|+.+.+-|...++...|++.|+.+++- .+-|-..|..|+++|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHH
Confidence 33444445555555555555555555533 32 344444555555555555555555555543 133445555555555
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHH
Q 046930 737 CKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEA 815 (965)
Q Consensus 737 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA 815 (965)
.-.+...-|+-.|+++.+ ++| |...|.+|+.+|.+.++.++|+++|.++...| +.+...+..|+..|.+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 555555555555555554 344 34455555555555555555555555554332 22333344455555555555555
Q ss_pred HHHHHHHHh
Q 046930 816 RSILREMLQ 824 (965)
Q Consensus 816 ~~~~~~~~~ 824 (965)
..+|++.++
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 555555444
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.72 E-value=5.6e-14 Score=148.55 Aligned_cols=587 Identities=14% Similarity=0.083 Sum_probs=320.8
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD 244 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 244 (965)
.+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 4567889999999999999999999999998 9999987777778888999998888888877665 577
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC---CCCHHHHHHHHHHhh
Q 046930 245 EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI---LGDVVTYSTLLHGYI 321 (965)
Q Consensus 245 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~l~~~~~ 321 (965)
..+|..|..+|...||+.. |+...+ ....+...+...|.-..-..++.++ +.........+....
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 8899999999999999776 222222 1122233344444444444443332 222222233334444
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 046930 322 EEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVG-ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEAL 400 (965)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 400 (965)
..|-++.++++...+-...... +... +++.+.... .+++-..+.+...+ .|++.++..++.+-...|+.+.|.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHH
Confidence 4555565555554432211110 1111 233332222 23333333333333 488888888888888889999999
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcc
Q 046930 401 EIFDELRRMSIS-SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLR 479 (965)
Q Consensus 401 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~ 479 (965)
.++.+|.+.+.+ ...-+..++.+ .+....+..+++.|.+.|+.|+..|+...+-.+..+|..........-.....
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 999999888555 33333344433 77788888888888889999999888888877776444222221111111110
Q ss_pred cccchhHHHH-HHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHH----HHhcCCCch
Q 046930 480 SEIYDIICND-VISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMF----VKENGLVEP 554 (965)
Q Consensus 480 ~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 554 (965)
..+..++++. +..-..+.+...-....+.+..-.|...+..+|........ .|+.+....+...+ .+..+...+
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHH
Confidence 1111111111 00011111222222222333333333333333332222221 33322222211111 111111112
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhhhhcCc-cccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHh
Q 046930 555 MISKFLVQYLCLNDVTNALLFIKNMKEISS-TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCR 633 (965)
Q Consensus 555 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (965)
++...+ ..+|++...... .+......+.............+.+...
T Consensus 381 a~~~~l------------rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l--------------------- 427 (1088)
T KOG4318|consen 381 AFGALL------------RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL--------------------- 427 (1088)
T ss_pred HHHHHH------------HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh---------------------
Confidence 222211 222222221111 1111111111111111111111111110
Q ss_pred cCCHHHHHHHHHHHHhcC-----C------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 046930 634 EGYVNKALDLCAFAKNKG-----I------TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLC 702 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~-----~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 702 (965)
+...+...+..+.... . .+-...-+.++..++..-+..+++..-.+....-+ ...|..|+..+.
T Consensus 428 --rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~ 502 (1088)
T KOG4318|consen 428 --RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMD 502 (1088)
T ss_pred --CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHH
Confidence 1111111111111000 0 01112345566666666666666655544433211 267889999999
Q ss_pred ccCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC-hhHHHHHHHHHHhcCCHH
Q 046930 703 KEGQLLDAKKLFDRMVLK--GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINC-LEPD-KFTVSAVINGFCQKGDME 778 (965)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~ 778 (965)
..++.+.|...+++.... .+..+..-+..+.+.+.+.+...++..++.++.+.- ..|+ ..+..-+.......|+.+
T Consensus 503 ~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe 582 (1088)
T KOG4318|consen 503 LHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQE 582 (1088)
T ss_pred HHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHH
Confidence 999999999999988754 334466677888999999999999999998887642 2333 345566666777889988
Q ss_pred HHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 779 GALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
.-.+.++-+...|+.-+ ..|+..+.+.++...|.+..+...++..
T Consensus 583 ~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk 627 (1088)
T KOG4318|consen 583 KLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYK 627 (1088)
T ss_pred HHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhc
Confidence 88888887776665542 3456677888999999888888777543
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.1e-14 Score=140.45 Aligned_cols=422 Identities=14% Similarity=0.081 Sum_probs=262.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+...++-|.+.|++++|++.|.++++.. |..+..|..++.+|...|+|++.++.-.++++.+ |.-+.++.....
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHH
Confidence 35566777888888999999999888887 5557788888888888999999888888888865 444568888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE-DR-- 205 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-- 205 (965)
++-..|++++|+.-..-.--.+ | .-|..+- .++.-..+ ..|....++-.+ .+
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~-------------------~-F~n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p 246 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILE-------------------G-FQNASIE-PMAERVLK----KQAMKKAKEKLKENRPP 246 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhh-------------------h-cccchhH-HHHHHHHH----HHHHHHHHHhhcccCCC
Confidence 8888888888765332211000 0 0011110 11110111 112222222222 11
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHhHHHHHHHHHHHC---CC---CC
Q 046930 206 LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR-RGDLDCAFRLLEDMEKK---GI---KP 278 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~---g~---~~ 278 (965)
+-|+.....+....+...-. ..+...+...|...-..+-..+.. ...+..|...+.+-... .. ..
T Consensus 247 ~lPS~~fi~syf~sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~ 318 (606)
T KOG0547|consen 247 VLPSATFIASYFGSFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEI 318 (606)
T ss_pred CCCcHHHHHHHHhhcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccccc
Confidence 12333222222222211000 000000000000000000000000 01122222222221110 00 00
Q ss_pred C------HHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 046930 279 S------IVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMC 348 (965)
Q Consensus 279 ~------~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 348 (965)
| ..++......+.-.|+.-.|..-|+.+ +.+...|..+...|...++.++.++.|....+.++ -++.+|
T Consensus 319 d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvY 397 (606)
T KOG0547|consen 319 DAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVY 397 (606)
T ss_pred chhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchh
Confidence 1 112222223334456666665555432 33444477788889999999999999999988773 456678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 046930 349 NILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSG 428 (965)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (965)
..-...+.-.+++++|..=|++....+ +.+...+..+..+..+.+.++++...|++..+..|..+.+|+..+..+...+
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence 778888888899999999999999875 4456678888888889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCC-------CCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHH
Q 046930 429 MVDMATEVFIELNEKGLS-------LYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSE 501 (965)
Q Consensus 429 ~~~~A~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 501 (965)
+++.|.+.|+..++.... +.+.....++ .+.-.+++..|.+++.+..+.+|... ..+..++.+-.+.|+.+
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKID 554 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHH
Confidence 999999999999875211 1111122222 22234889999999999999988764 67888999999999999
Q ss_pred HHHHHHHHHHh
Q 046930 502 VASELYMFMRK 512 (965)
Q Consensus 502 ~A~~~~~~~~~ 512 (965)
+|+++|++...
T Consensus 555 eAielFEksa~ 565 (606)
T KOG0547|consen 555 EAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 39
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=6.5e-12 Score=122.05 Aligned_cols=205 Identities=16% Similarity=0.241 Sum_probs=149.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH--HhcCChhhH-HHHHHHHHHcCCCCCCHhhHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF--CKIGKPELA-IGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
=+.|++ ...+|.+.++.-+|+.|...+. |.+..+-..+.+.- ....++.-| .+.|-.+...+ ..+..+|
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~--~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW--- 190 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENV--DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW--- 190 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCC--CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc---
Confidence 345554 5677899999999999999987 77777766665533 333333322 22343443333 2333344
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
+.|...+ ++-+.. +....+|..+|.+.++-...++|.++|.+......
T Consensus 191 -----K~G~vAd---L~~E~~------------------------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~ 238 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETL------------------------PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG 238 (625)
T ss_pred -----ccccHHH---HHHhhc------------------------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 2233222 322222 35688999999999999999999999999988878
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhH----HHHHHHHHHHCCCCCCHHH
Q 046930 207 RPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDC----AFRLLEDMEKKGIKPSIVT 282 (965)
Q Consensus 207 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~ 282 (965)
+.+..+||.+|.+-.-.. -.++..+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+
T Consensus 239 kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsS 314 (625)
T KOG4422|consen 239 KVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSS 314 (625)
T ss_pred eeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 889999999987644332 26888999998899999999999999999998765 5678889999999999999
Q ss_pred HHHHHHHHHhcCCcch
Q 046930 283 YNTIINGLCKVGRTSD 298 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~ 298 (965)
|..++..+.+.++..+
T Consensus 315 yh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 315 YHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHHHHhcccCCchh
Confidence 9999998888777654
No 40
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.1e-12 Score=124.07 Aligned_cols=455 Identities=12% Similarity=0.068 Sum_probs=273.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchH
Q 046930 220 FCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDA 299 (965)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 299 (965)
+....++..|+.+++--...+-.....+-.-+..++.+.|++++|...+.-+... -.++...+..|..++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHH
Confidence 4445566677666665543332211122233445667888888888888877664 345666777777777778888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCccc
Q 046930 300 EEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVAN 379 (965)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (965)
..+....+.++.....++..-.+.++-++.....+.+... ...-.+|.......-.+++|++++.+++..+ |+
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~e 183 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PE 183 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hh
Confidence 8888888777777777777777777777766665555332 2333445555556667899999999988754 55
Q ss_pred HHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 380 SVTYS-TMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 380 ~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
....+ .+.-+|.+..-++-+.++++-.++..|+++.+.+..+....+.=.-..|..-.+.+.+.+ ..... .+.-
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~~~~----f~~~ 258 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI-DQEYP----FIEY 258 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc-cccch----hHHH
Confidence 44444 345567788888888888888888888888888887776665444344444444444332 11100 0000
Q ss_pred HHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhh
Q 046930 459 TFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLI 538 (965)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (965)
+++. +-. .+ .+-+.|++++
T Consensus 259 l~rH----------------NLV------------vF--rngEgALqVL------------------------------- 277 (557)
T KOG3785|consen 259 LCRH----------------NLV------------VF--RNGEGALQVL------------------------------- 277 (557)
T ss_pred HHHc----------------CeE------------EE--eCCccHHHhc-------------------------------
Confidence 0000 000 00 0111222221
Q ss_pred hhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCC
Q 046930 539 GPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPC 618 (965)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 618 (965)
-.+.+-+
T Consensus 278 -----------------------------------------------------------------------P~L~~~I-- 284 (557)
T KOG3785|consen 278 -----------------------------------------------------------------------PSLMKHI-- 284 (557)
T ss_pred -----------------------------------------------------------------------hHHHhhC--
Confidence 1111111
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhCCCCCC-
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC-------FVEAFRLFDSLERIDMVPS- 690 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~- 690 (965)
+.+-..++-.|.+.+++++|..+.+++. +.++.-|..-+-.++..|+ ..-|.+.|+-.-+.+..-|
T Consensus 285 --PEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 285 --PEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred --hHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 2233344555666677777766655542 1233333333333333332 3445555554433333333
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHH-HHHHH
Q 046930 691 EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTV-SAVIN 769 (965)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~ 769 (965)
..--.++...+.-..++++.+.+++.+..- +..|.....+++.+++..|.+.+|+++|-++....++ |..+| ..|+.
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LAr 436 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLAR 436 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHH
Confidence 222334455555566788888888888764 4445555567889999999999999999877643222 34455 55678
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccH
Q 046930 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESV 844 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (965)
+|.+.+..+-|.+++-++ +-..+..+ +..+++.|++.|.+--|.+.|+.+.. ++|+++.|
T Consensus 437 Cyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~------------lDP~pEnW 497 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI------------LDPTPENW 497 (557)
T ss_pred HHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc------------cCCCcccc
Confidence 889999999999887765 22333334 66677888899999988888887766 67777765
No 41
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.70 E-value=8.1e-12 Score=128.43 Aligned_cols=470 Identities=14% Similarity=0.105 Sum_probs=318.5
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.....|..++..| ..++|...++..+.+++..+-.+++.+..++ .+...|+-++|.......+..+ +.+..
T Consensus 4 ~~KE~~lF~~~lk~y--E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL--~L~~lg~~~ea~~~vr~glr~d---~~S~v 76 (700)
T KOG1156|consen 4 SPKENALFRRALKCY--ETKQYKKGLKLIKQILKKFPEHGESLAMKGL--TLNCLGKKEEAYELVRLGLRND---LKSHV 76 (700)
T ss_pred ChHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHhCCccchhHHhccc--hhhcccchHHHHHHHHHHhccC---cccch
Confidence 456667888888876 7789999999999999866554555454444 4778899999999999999877 78889
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+|..+|-.+....+|++|+.+|..++..+ +.|...|.-+.-.-.+.|+++.....-.+.++..
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------------- 139 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------------- 139 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---------------
Confidence 99999999999999999999999999977 6777888888877888999999888888887752
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR-LRPNLITYTAII------FGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~ 238 (965)
+..-..|..++.++.-.|++..|..++++..+.. -.|+...+.-.. ....+.|.+++|++.+..-..
T Consensus 140 ------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 140 ------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 1345678888888888999999999999998864 235555543322 456677888888888876554
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCcchHH-HHHcCC---CCCHHHH
Q 046930 239 LGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYN-TIINGLCKVGRTSDAE-EVSKGI---LGDVVTY 313 (965)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~a~-~~~~~~---~~~~~~~ 313 (965)
.- ......-..-...+.+.+++++|..++..++.+ .||...|. .+..++.+..+.-++. .++... .|.....
T Consensus 214 ~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 214 QI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred HH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 31 222233344557788999999999999999988 45555444 4444443333333333 343322 1211111
Q ss_pred HHHHHHhhhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---H-HHHHHHHchhCC----------Ccc
Q 046930 314 STLLHGYIEEDNV-NGILETKQRLEEAGIQMDIVMCNILIKALFMVGALE---D-ARALYQAMPEMN----------LVA 378 (965)
Q Consensus 314 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~-A~~~~~~~~~~~----------~~~ 378 (965)
..+--....-.++ +..-.++....+.|+++- +..+...|-.....+ + +..+...+...+ -+|
T Consensus 291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred hhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 1111111111222 223345556666665542 223333222111111 1 111111111110 135
Q ss_pred cHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 046930 379 NSV--TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIIL 456 (965)
Q Consensus 379 ~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 456 (965)
... ++..++..+-..|+++.|...++.+..+.|.-+..|..-++.+...|++++|..++++..+.+ .+|...-..-.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA 446 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA 446 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence 544 445677888999999999999999999988889999999999999999999999999998764 45555544666
Q ss_pred HHHHHcCChhhHHHHHHHHHhccccc------chhHHHHH--HHHHHhcCcHHHHHHHHHHHHh
Q 046930 457 QATFAKGGVGGVLNFVYRIENLRSEI------YDIICNDV--ISFLCKRGSSEVASELYMFMRK 512 (965)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 512 (965)
.-..+.+..++|..++....+.+... ...+|-.+ +.+|.+.|++..|++-|..+.+
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 66677788888888887776555321 11344433 5667777777777777766544
No 42
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=4.6e-12 Score=123.05 Aligned_cols=424 Identities=16% Similarity=0.159 Sum_probs=272.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhHH-HHHHHHHHhcCCCCCCc
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYS--FCSQGNMSRA-VEVLELMSDENVKYPFD 83 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~ 83 (965)
|.+...=++|++. ..+|...++.-+|.. |++.|++.++.+-..|.+. |....+..-| .+.|-.+...+ ..+
T Consensus 113 ~~~V~~E~nL~km--IS~~EvKDs~ilY~~-m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~---E~S 186 (625)
T KOG4422|consen 113 PLQVETENNLLKM--ISSREVKDSCILYER-MRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG---EDS 186 (625)
T ss_pred chhhcchhHHHHH--HhhcccchhHHHHHH-HHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc---ccc
Confidence 3444455677775 467889999999988 6777788887776555543 3333333322 22333333333 344
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~ 163 (965)
...| +.|...+ ++-+. .|.+..++..++..+|+-...+.|.++|++.....
T Consensus 187 ~~sW--------K~G~vAd---L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------------- 237 (625)
T KOG4422|consen 187 TSSW--------KSGAVAD---LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------------- 237 (625)
T ss_pred cccc--------ccccHHH---HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-------------
Confidence 4444 3444333 33332 37788899999999999999999999999987543
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHc
Q 046930 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEE----AFTVFKKVEDL 239 (965)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 239 (965)
.+.+..+||.+|.+-.-. ...++..+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.
T Consensus 238 -------~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 238 -------GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred -------heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 356788888888764322 227888899988899999999999999999997765 56777888889
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHhH-HHHHHHHHHHC----CC---CC-CHHHHHHHHHHHHhcCCcchHHHHH-------
Q 046930 240 GLVADEFVYATLIDGVCRRGDLDC-AFRLLEDMEKK----GI---KP-SIVTYNTIINGLCKVGRTSDAEEVS------- 303 (965)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----g~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~------- 303 (965)
|+.|...+|..+|..+++.++..+ +..++.++... .+ .| |..-+...+..|.+..+.+-|.++.
T Consensus 307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 999999999999988888877644 44555554431 12 22 3445666777777888877777762
Q ss_pred --cCCCCC---HHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcc
Q 046930 304 --KGILGD---VVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVA 378 (965)
Q Consensus 304 --~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 378 (965)
..++++ ..-|..+....+.....+.....|+.++-.-+-|...+...++++..-.|.++-.-+++..++..|..-
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 223333 223445566677777888888888888777777788888888888888888888888888887776544
Q ss_pred cHHHHHHHHHHHHHcC-CH--------HH-----HHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 379 NSVTYSTMIDGYCKLG-RI--------EE-----ALEIFDELRR------MSISSVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 379 ~~~~~~~l~~~~~~~~-~~--------~~-----A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
+......+...+++.+ +. .. |..+++.... ...-+....+.++-.+.+.|+.++|.+++.
T Consensus 467 r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~ 546 (625)
T KOG4422|consen 467 RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLG 546 (625)
T ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHH
Confidence 4444444444444433 11 10 1111111110 111245566677777778888888888888
Q ss_pred HHHHCCC----CCCHHhHHHHHHHHHHcCChhhHHHHHHHHH
Q 046930 439 ELNEKGL----SLYVGMHKIILQATFAKGGVGGVLNFVYRIE 476 (965)
Q Consensus 439 ~~~~~~~----~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~ 476 (965)
-+.+.+- .|......-++......++...|+..++-+.
T Consensus 547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7755431 2222233344444444455555555554443
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=9.4e-14 Score=129.91 Aligned_cols=252 Identities=13% Similarity=0.116 Sum_probs=184.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHH
Q 046930 627 IVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS----EVSYATLIYNLC 702 (965)
Q Consensus 627 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 702 (965)
|+.-|...|-+|.|+.+|..+.+.+.- -..+...|+..|....++++|+++-.++.+.+-.+. +..|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 344466667777777777777765322 445667788888888888888888888877654433 233555666666
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcCCHHHH
Q 046930 703 KEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVINGFCQKGDMEGA 780 (965)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 780 (965)
...+++.|+..+.++.+.+ +..+..-..+++++...|+++.|++.++.+.+. .|+ ..+...|..+|.+.|+.++.
T Consensus 192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7788999999999998863 334556668899999999999999999999985 565 45788899999999999999
Q ss_pred HHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHH-hh--hcCcH
Q 046930 781 LGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLIS-LC--EQGSI 857 (965)
Q Consensus 781 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~--~~g~~ 857 (965)
+..+.++.+ ..+....-..+........-.+.|...+.+-+. -+|+...++.|+.. +. +.|+.
T Consensus 269 ~~fL~~~~~--~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~------------r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 269 LNFLRRAME--TNTGADAELMLADLIELQEGIDAAQAYLTRQLR------------RKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHHHHH--ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh------------hCCcHHHHHHHHHhhhccccccch
Confidence 999999976 344444444455544444455666666666555 36777777888775 32 45778
Q ss_pred HHHHHHHHHHhhccCCCcccchhhh--hhhhhhhhhhhccc
Q 046930 858 LEAIAILDEIGYMLFPTQRFGTDRA--IETQNKLDECESLN 896 (965)
Q Consensus 858 ~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 896 (965)
.+-+..+..+........+.|+|.. |..-..+|.|++|.
T Consensus 335 k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CPsC~ 375 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCPSCR 375 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCCCcc
Confidence 8888889988777666666676666 99999999999664
No 44
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=2.4e-11 Score=130.63 Aligned_cols=461 Identities=12% Similarity=0.007 Sum_probs=246.7
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.-.+.|-.|++-|| +.-|...|.+.|+++...+ +.+.......+..|.+..+|+.|..+.-..-+..+. ......
T Consensus 489 ~~~apaf~~LG~iYr-d~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a-~~~k~n 564 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYR-DSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-FACKEN 564 (1238)
T ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-HHHHhh
Confidence 334456666666653 3336666666666666544 345556666666666666777666664444443311 112233
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
|..++-.|...++...|+..|+.+++.+ |.|...|..++.+|.++|++..|.++|.++....
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr---------------- 626 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR---------------- 626 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC----------------
Confidence 4455666666667777777777776655 5666677777777777777777777776665532
Q ss_pred hhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--
Q 046930 167 VDKGIKPDT-VSYTILLDGFSKEGTIEKAVGILNKMIEDR------LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE-- 237 (965)
Q Consensus 167 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 237 (965)
|+. ..-......-+..|.+.+|+..+...+... ...-..++-.+...+...|-..+|...++..+
T Consensus 627 ------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 627 ------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred ------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 221 111122223445666666666666655320 01111222222222222232333333333222
Q ss_pred -----HcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc--h----HHHHHc--
Q 046930 238 -----DLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTS--D----AEEVSK-- 304 (965)
Q Consensus 238 -----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~----a~~~~~-- 304 (965)
......+...|-.+.+++ .+|-... .. .|+......+..-.-..+... + +.+.+-
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac----------~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDAC----------YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHH----------HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 111111222222222221 1111111 00 111111111111111111110 0 001000
Q ss_pred -CCCCCHHHHHHHHHHhhh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 046930 305 -GILGDVVTYSTLLHGYIE--------EDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMN 375 (965)
Q Consensus 305 -~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (965)
....+..+|..++..|.+ ..+...|+..+.+.++.. ..+..+|+.|.-. ...|.+.-|...|-+-....
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 112235566666665543 223347888888877654 3356677776655 66688888877776655443
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH--H--HCCCCCCHHh
Q 046930 376 LVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIEL--N--EKGLSLYVGM 451 (965)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~~ 451 (965)
+....+|..+...+....+++.|...|.......|.+...|..........|+.-++..+|..- . ..|-.++...
T Consensus 847 -p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 847 -PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred -ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 4456789999999999999999999999999999999999999988888999998998888772 2 2334455555
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHh---------cccccchhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 046930 452 HKIILQATFAKGGVGGVLNFVYRIEN---------LRSEIYDIICNDVISFLCKRGSSEVASELYMFM 510 (965)
Q Consensus 452 ~~~~l~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (965)
+.........+|+.+.-+.....+-. .+.....-+|...+...-..+.+..|.....+.
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55555555556665544443333211 112222345555555566666666666665553
No 45
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=9.3e-10 Score=113.10 Aligned_cols=624 Identities=12% Similarity=0.068 Sum_probs=344.1
Q ss_pred ccchhhHHHHHHHHHHccCCch-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--------hcCChhHHHHHHHHHHhcC
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPE-KALLVLKDCLRNHGTLPSSFTFCSLVYSFC--------SQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~ 77 (965)
|.+--.|...+.. +.|.+. +-..+|.++++.. +.+...|...+..-. -...|+....+|++.+-.-
T Consensus 24 p~svk~W~RYIe~---k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m 98 (835)
T KOG2047|consen 24 PFSVKCWLRYIEH---KAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM 98 (835)
T ss_pred chhHHHHHHHHHH---HccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH
Confidence 3444455555553 344444 4555788888754 556555555552211 1223555555666554422
Q ss_pred CCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 78 VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
..-+..|...+.....+|+...-...|++++..-++......|...+......+-.+-++.+|++.++
T Consensus 99 ---HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--------- 166 (835)
T KOG2047|consen 99 ---HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--------- 166 (835)
T ss_pred ---hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---------
Confidence 12337888888888999999999999999987543333445788888877778888899999999887
Q ss_pred hhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCh---HH
Q 046930 158 YSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR------LRPNLITYTAIIFGFCKKGKL---EE 228 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~ 228 (965)
.++..-+..+..+.+.+++++|.+.+...+... .+.+...|..+-....+..+. -.
T Consensus 167 ---------------~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 167 ---------------VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred ---------------cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 344556777778888999999999888876431 233455566665555554332 23
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHH-c---
Q 046930 229 AFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVS-K--- 304 (965)
Q Consensus 229 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~--- 304 (965)
...+++.+...-...-...|++|.+-|.+.|.++.|..+|++.... .....-+..+..+|.+-....-+..+- .
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4445555554422222357888889999999999999999888765 224445555666665432211111110 0
Q ss_pred CC-CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHH
Q 046930 305 GI-LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTY 383 (965)
Q Consensus 305 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (965)
.. +.+. -+++-.+..|+.+....+ ...| . -++..+ +.+...|
T Consensus 310 ~~n~ed~-------------~dl~~~~a~~e~lm~rr~----~~lN----------------s---VlLRQn-~~nV~eW 352 (835)
T KOG2047|consen 310 SGNEEDD-------------VDLELHMARFESLMNRRP----LLLN----------------S---VLLRQN-PHNVEEW 352 (835)
T ss_pred ccChhhh-------------hhHHHHHHHHHHHHhccc----hHHH----------------H---HHHhcC-CccHHHH
Confidence 00 0000 011111222222222110 0000 0 001111 2233334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 046930 384 STMIDGYCKLGRIEEALEIFDELRRM-SIS-----SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQ 457 (965)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 457 (965)
..-+. +..|+..+-+..|.++.+. +|. ....|..++..|-..|+++.|..+|++..+-+. .+...+..
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~ 426 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAE 426 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHH
Confidence 33332 2344455555555555444 221 233555666666666666666666666554321 11111111
Q ss_pred HHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchh
Q 046930 458 ATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWL 537 (965)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (965)
+|-..+++=.+..+++.|+++.+.+... |+.... .+...+.
T Consensus 427 ----------------------------vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~~-----~~yd~~~--- 467 (835)
T KOG2047|consen 427 ----------------------------VWCAWAEMELRHENFEAALKLMRRATHV---PTNPEL-----EYYDNSE--- 467 (835)
T ss_pred ----------------------------HHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchhh-----hhhcCCC---
Confidence 2222233334445555555555444321 111000 0000000
Q ss_pred hhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCC
Q 046930 538 IGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLP 617 (965)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 617 (965)
|+-.++
T Consensus 468 ----------------pvQ~rl---------------------------------------------------------- 473 (835)
T KOG2047|consen 468 ----------------PVQARL---------------------------------------------------------- 473 (835)
T ss_pred ----------------cHHHHH----------------------------------------------------------
Confidence 000000
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHH
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYAT 696 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 696 (965)
-.+...|...++.....|-++....+|+.++...+. ++.........+....-++++.++|++-+..-.-|+ ...|+.
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 013566777777777778888888888888877554 333333344455666778888888888777543455 345555
Q ss_pred HHHHHHc---cCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHH
Q 046930 697 LIYNLCK---EGQLLDAKKLFDRMVLKGFKPSTR--IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVIN 769 (965)
Q Consensus 697 l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 769 (965)
.+.-+.+ ...++.|..+|+++++ |++|... .|-..+..=.+.|....|+.+|+++... +.+. ...||..+.
T Consensus 553 YLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 5544332 3467889999999888 6776533 2223333334568888888888887653 5553 246666665
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCChHH---HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLG---FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
--...=-+....++|+++++ .-|+... ....+..=++.|..+.|..+|...-+-
T Consensus 631 kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 631 KAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 44333334566778888876 3555433 333455556789999999888877663
No 46
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.67 E-value=1.2e-10 Score=120.15 Aligned_cols=155 Identities=10% Similarity=0.034 Sum_probs=88.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
+...+++...++..+.+++.. |...+++...|-.+...|+-++|.......++.+ +.+...|..++-.+....++
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~---~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKF---PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhC---CccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhH
Confidence 445567777777777777755 5666666666667777777777777777666654 45555666666666666666
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAI 216 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 216 (965)
++|+++|+.++..+ +.|...|.-+.-.-.+.|+++.....-...++..+. ....|...
T Consensus 92 ~eaiKcy~nAl~~~---------------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~ 149 (700)
T KOG1156|consen 92 DEAIKCYRNALKIE---------------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGF 149 (700)
T ss_pred HHHHHHHHHHHhcC---------------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHH
Confidence 67777666666542 123444444433344455555555555555443211 33444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 046930 217 IFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
+.++.-.|++..|..+.++..+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555443
No 47
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.67 E-value=1.7e-11 Score=131.72 Aligned_cols=486 Identities=11% Similarity=-0.028 Sum_probs=283.9
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHH
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIG 105 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 105 (965)
+...|...|-++++.+ +.-..+|..|+..|...-+...|.++|+.+.+.+ +.+.+++......|....+++.|..
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHH
Confidence 3667777787877755 3456778888888888888899999999999998 7888999999999999999999998
Q ss_pred HHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH
Q 046930 106 FFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF 185 (965)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 185 (965)
..-..-+..+...-...|...+-.|...+++..|+.-|+...+..| .|...|..++.+|
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP---------------------kD~n~W~gLGeAY 606 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP---------------------KDYNLWLGLGEAY 606 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc---------------------hhHHHHHHHHHHH
Confidence 8555544331122233566677778888999999999999887542 6788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhcC
Q 046930 186 SKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG------LVADEFVYATLIDGVCRRG 259 (965)
Q Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g 259 (965)
...|++..|..+|.++...++. +...-.......+..|.+.+|+..+....... ...-..++..+...+.-.|
T Consensus 607 ~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g 685 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG 685 (1238)
T ss_pred HhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988775322 22222233445667799999999988876432 0011122322322233333
Q ss_pred CHhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHH---HHHHHHHHhhhcCCh---
Q 046930 260 DLDCAFRLLEDMEK-------KGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVV---TYSTLLHGYIEEDNV--- 326 (965)
Q Consensus 260 ~~~~A~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~l~~~~~~~~~~--- 326 (965)
-...|..++++.++ .....+...|..+..++ .+|-.+.|+.+ ....+..-....+..
T Consensus 686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac----------~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~ 755 (1238)
T KOG1127|consen 686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC----------YIFSQEEPSIVNMHYLIILSKQLEKTGALKKN 755 (1238)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH----------HHHHHhcccchHHHHHHHHHHHHHhcccCcch
Confidence 33344444433322 21112333333333322 22322223311 111111111111111
Q ss_pred h---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCC
Q 046930 327 N---GILETKQRLEEAGIQMDIVMCNILIKALFM--------VGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGR 395 (965)
Q Consensus 327 ~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (965)
+ -+.+.+-.-.. ...++.+|..|+..|.+ ..+...|+..+.+.++.. ..+..+|+.|.-. ...|+
T Consensus 756 d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gn 831 (1238)
T KOG1127|consen 756 DLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGN 831 (1238)
T ss_pred hHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccch
Confidence 1 11111111111 11223444444444433 122345677777766643 3455667766654 55677
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HHcCChhhHHHHHHH
Q 046930 396 IEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQAT-FAKGGVGGVLNFVYR 474 (965)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~a~~~~~~ 474 (965)
+.-|...|-+.....|....+|..++..+.+..+++-|...|...... .|+....+....-+ ...|+.-+...++..
T Consensus 832 va~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 832 VACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 878888887777777888888888888888888888888888887754 45444433322222 223444444444443
Q ss_pred HHhcccc----cchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcC
Q 046930 475 IENLRSE----IYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENG 550 (965)
Q Consensus 475 ~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (965)
-...... .....|-........+|+.++-+..- ++...+.-.++.++..++
T Consensus 910 s~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~-------------------------~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 910 SDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA-------------------------RKISSASLALSYYFLGHP 964 (1238)
T ss_pred hHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh-------------------------hhhhhhHHHHHHHHhcCc
Confidence 2221111 11123333333344444433333222 223334445667777777
Q ss_pred CCchHHHHHHHHHHhhhcHHHHHHHHHhh
Q 046930 551 LVEPMISKFLVQYLCLNDVTNALLFIKNM 579 (965)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 579 (965)
....++...+...-..+.+.+|.....+.
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766553
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.4e-12 Score=129.05 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=124.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY 699 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 699 (965)
-..+|-..+..|+-.|..|+|+..|..+.+. .+-..-.+--++.-|.+.++++.|.++|.++.... +.|+...+-+.-
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgv 422 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGV 422 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhh
Confidence 3556777777777777777777777766554 11122233335566777888888888888877643 344667777776
Q ss_pred HHHccCChHHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHH
Q 046930 700 NLCKEGQLLDAKKLFDRMVLK--GFKP----STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFC 772 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 772 (965)
+....+.+.+|..+|+..+.. ...+ -..++++|+.+|.+++++++|+..+++.+.. .| +..++.+++-.|.
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYH 500 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHH
Confidence 677778888888888877631 1111 2345788888899999999999999888874 55 6778888888888
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCChHHHH
Q 046930 773 QKGDMEGALGFFLDFNTKGVSPDFLGFL 800 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 800 (965)
..|+++.|++.|.+. ..+.|+..+..
T Consensus 501 llgnld~Aid~fhKa--L~l~p~n~~~~ 526 (611)
T KOG1173|consen 501 LLGNLDKAIDHFHKA--LALKPDNIFIS 526 (611)
T ss_pred HhcChHHHHHHHHHH--HhcCCccHHHH
Confidence 889999999999988 44888876533
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=3.4e-16 Score=159.58 Aligned_cols=259 Identities=17% Similarity=0.159 Sum_probs=111.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSL-PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ 669 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 669 (965)
..+..+...|+++.|++++....... |+.|+..|..++......++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666677777777775444444 5678888888898999999999999999999987544 56677777777 789
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 046930 670 GCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKF 748 (965)
Q Consensus 670 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 748 (965)
+++++|.+++.+..+.. +++..+..++..+...++++++.++++.+... ..+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876643 56667778888899999999999999998764 3456788899999999999999999999
Q ss_pred HHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 749 LHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 749 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
++++++. .|+ ......++..+...|+.+++.++++...+.. .++...+..++.++...|+.++|+.+|+++++
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--- 242 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--- 242 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH---
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc---
Confidence 9999984 785 6788899999999999999988888886532 33444577899999999999999999999998
Q ss_pred chhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHh
Q 046930 828 VLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIG 868 (965)
Q Consensus 828 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 868 (965)
..| ++.....++..+...|+.++|.++++++.
T Consensus 243 ---------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 ---------LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---------HSTT-HHHHHHHHHHHT----------------
T ss_pred ---------ccccccccccccccccccccccccccccccccc
Confidence 344 56677888889999999999999988764
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-09 Score=114.37 Aligned_cols=457 Identities=14% Similarity=0.013 Sum_probs=264.9
Q ss_pred HhhhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcC
Q 046930 319 GYIEEDNVNGILETK----QRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLG 394 (965)
Q Consensus 319 ~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 394 (965)
.+....+.++++-.. .++....+..|...|..|.-++.+.|+++.+.+.|++....- ......|..+...+...|
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag 371 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG 371 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc
Confidence 344455555554332 223333455677888888888888899988888888876532 234567888888888888
Q ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC--C----CCCCHHhHHHHHHHHHHc---
Q 046930 395 RIEEALEIFDELRRMS--ISSVACYNCIINGLC-KSGMVDMATEVFIELNEK--G----LSLYVGMHKIILQATFAK--- 462 (965)
Q Consensus 395 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~----~~~~~~~~~~~l~~~~~~--- 462 (965)
.-..|..+++...... |+++..+......|. +.+.+++++.+..+++.. + +.|-...+..+.......
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 8888888888877664 656666655555554 457788888887777762 1 122222111111111110
Q ss_pred ------CChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcch
Q 046930 463 ------GGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKW 536 (965)
Q Consensus 463 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 536 (965)
....++++.+++..+.++..+..+| .+..-|...++.+.|....++.++.+...+...|.-+...+...+++.
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~dp~~if-~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPTDPLVIF-YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 0123455555565555655553333 344446666777777777777666655555555555555555555555
Q ss_pred hhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccC
Q 046930 537 LIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSL 616 (965)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 616 (965)
.+..+....+.+.|.+-....-.+..-.. .++.+++......+..-.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~---------------------------------~~~~e~~l~t~~~~L~~w 577 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELT---------------------------------FNDREEALDTCIHKLALW 577 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhh---------------------------------cccHHHHHHHHHHHHHHH
Confidence 55555555555544433222222222222 344444443333322111
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--CC--
Q 046930 617 PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNK--GITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMV--PS-- 690 (965)
Q Consensus 617 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 690 (965)
.. . ......++-.........+.-. .......++..+.......+ ..+..-.. +-+.... |+
T Consensus 578 e~--------~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 578 EA--------E-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSL 645 (799)
T ss_pred Hh--------h-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCch
Confidence 00 0 0000111111122222221111 11111223332222221111 11000000 1111111 22
Q ss_pred ----HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHH
Q 046930 691 ----EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVS 765 (965)
Q Consensus 691 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 765 (965)
...|....+.+.+.+..++|.-++.++.+. .+.....|+..+..+...|...+|.+.|..... +.|+ ..+..
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~ 722 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHH
Confidence 223556667788899999999999988875 355677888888999999999999999999987 5886 45888
Q ss_pred HHHHHHHhcCCHHHHHH--HHHHhHhCCCCCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 766 AVINGFCQKGDMEGALG--FFLDFNTKGVSPDF-LGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 766 ~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
+++.++.+.|+..-|.. ++..+.+ ++|++ ..|+.|+.++...|+.++|.+.|..+++-..
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99999999998877777 8888865 77765 4599999999999999999999999988443
No 51
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=5.1e-09 Score=112.92 Aligned_cols=778 Identities=14% Similarity=0.165 Sum_probs=400.9
Q ss_pred ccccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 046930 3 KTSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF 82 (965)
Q Consensus 3 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (965)
+.+.|-....|..-...+ ..+|+|++|.+.--.+ -.|+--++.+.+..-.+-...|+..--+..|...+..+ |.
T Consensus 353 R~nLaGAe~Lfv~rFneL-faqG~Y~eAAkvAAsS--PrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG---kL 426 (1666)
T KOG0985|consen 353 RANLAGAENLFVRRFNEL-FAQGEYEEAAKVAASS--PRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG---KL 426 (1666)
T ss_pred hcCCccHHHHHHHHHHHH-HhCccHHHHHHHHHhC--chhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc---cc
Confidence 455666666666666766 6778888886643221 11333455565555555566777777888888888877 66
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHH-----HcCC-C-CCC--H--hh------HHHHHHHHHhcCChhHHHHHHHH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAI-----SLGA-L-KPN--V--VS------YTSLVIALCMLGRVNEVNELFVR 145 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-~-~~~--~--~~------~~~l~~~~~~~~~~~~A~~~~~~ 145 (965)
|..--..+++.-..+|+.+.-..++.+=. +.|. + +-+ . .+ -...+.+++.+|++++++-...+
T Consensus 427 Nk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kK 506 (1666)
T KOG0985|consen 427 NKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKK 506 (1666)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHH
Confidence 66666667777777777555444443211 0010 0 111 0 01 12344555566666665554433
Q ss_pred HHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046930 146 MESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK 225 (965)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 225 (965)
-|..||.. .++....+ -..+.+.++...+.+... ...-++.+...+...+.
T Consensus 507 -----------------------vGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~ 557 (1666)
T KOG0985|consen 507 -----------------------VGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNL 557 (1666)
T ss_pred -----------------------cCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHh
Confidence 23445533 34444433 577778777777766422 23345566666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHc
Q 046930 226 LEEAFTVFKKVEDLGLVADEFVY-ATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 226 ~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 304 (965)
...+...+-.+.+.+ .|+.... ..++..- ..+-++-|..++ ..+.- +..-+..+...|.+.|-...|++.+.
T Consensus 558 iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~N-L~~aPqVADAIL----gN~mF-tHyDra~IAqLCEKAGL~qraLehyt 630 (1666)
T KOG0985|consen 558 IQQCTSFLLDALKLN-SPDEGHLQTRLLEMN-LVHAPQVADAIL----GNDMF-THYDRAEIAQLCEKAGLLQRALEHYT 630 (1666)
T ss_pred hhhhHHHHHHHhcCC-ChhhhhHHHHHHHHH-hccchHHHHHHH----hcccc-ccccHHHHHHHHHhcchHHHHHHhcc
Confidence 677777666666554 3443322 2222221 223333333332 22111 11225667778888888888887776
Q ss_pred CCCC--CHHHHHH-----HHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC---
Q 046930 305 GILG--DVVTYST-----LLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEM--- 374 (965)
Q Consensus 305 ~~~~--~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 374 (965)
.+.. ....... -+..|...-.++...++++.|...++..+..+...+..-|...=..+..+++|+.....
T Consensus 631 Dl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL 710 (1666)
T KOG0985|consen 631 DLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGL 710 (1666)
T ss_pred cHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhH
Confidence 5421 1111111 12345556667788888888888777777777766666666655556666666665432
Q ss_pred --------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------------------CCHHHH-
Q 046930 375 --------NLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSI----------------------------SSVACY- 417 (965)
Q Consensus 375 --------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------~~~~~~- 417 (965)
++..|+.+....+.+.++.|++.+..++.++-.--+| .+...|
T Consensus 711 ~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYL 790 (1666)
T KOG0985|consen 711 YYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYL 790 (1666)
T ss_pred HHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHH
Confidence 2345566667778888888888877776654110000 011111
Q ss_pred -----HHHHHHHHhcCCh----------------HHH------------------------------HHHHHHHHHCCCC
Q 046930 418 -----NCIINGLCKSGMV----------------DMA------------------------------TEVFIELNEKGLS 446 (965)
Q Consensus 418 -----~~l~~~~~~~g~~----------------~~A------------------------------~~~~~~~~~~~~~ 446 (965)
...+..|.+.-++ ++. ...++..+..| .
T Consensus 791 yrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~ 869 (1666)
T KOG0985|consen 791 YRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-S 869 (1666)
T ss_pred HHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-C
Confidence 1122223222111 111 11222222222 2
Q ss_pred CCHHhHHHHHHHHHHcCChhhHH----------HHHHHHHhcccccc-------------------hhHHHHHHHHHHhc
Q 046930 447 LYVGMHKIILQATFAKGGVGGVL----------NFVYRIENLRSEIY-------------------DIICNDVISFLCKR 497 (965)
Q Consensus 447 ~~~~~~~~~l~~~~~~g~~~~a~----------~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~ 497 (965)
.|..+++.+...|..+++..+.. ..-+--++.+|... ...+....+.+.+.
T Consensus 870 ~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R 949 (1666)
T KOG0985|consen 870 QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVER 949 (1666)
T ss_pred cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhc
Confidence 33333333333333222211100 00000011111100 01222223333333
Q ss_pred CcHHHHHHHH-----------HHHHhcCC--ccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCc--hHHHHHHHH
Q 046930 498 GSSEVASELY-----------MFMRKRGS--VVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVE--PMISKFLVQ 562 (965)
Q Consensus 498 g~~~~A~~~~-----------~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 562 (965)
.+.+.-.+++ ++....+. .-+++......+++-..+-..+..+++++++-+..... ..+..++..
T Consensus 950 ~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiL 1029 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLIL 1029 (1666)
T ss_pred cChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHH
Confidence 3332222222 11111110 11112222222233333333333333333332222111 011111111
Q ss_pred HHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 046930 563 YLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALD 642 (965)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 642 (965)
-....+.....++.+++..-+ +..++......+-.++|..++.... .+..+.+.|+. .-+.++.|.+
T Consensus 1030 tAikad~trVm~YI~rLdnyD-----a~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1030 TAIKADRTRVMEYINRLDNYD-----APDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred HHhhcChHHHHHHHHHhccCC-----chhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHH
Confidence 111112222222222221111 1122233344444555555555432 12333333332 2345566655
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 046930 643 LCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGF 722 (965)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (965)
.-++.- .+..|..+..+-.+.|...+|++-|-++ .|+..|...++...+.|.+++-..++..+.++.-
T Consensus 1097 fAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1097 FAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 544432 4567888888888888888888877543 3466788888888888899888888888887755
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHH
Q 046930 723 KPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYL 802 (965)
Q Consensus 723 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 802 (965)
.|.+.+ .|+-+|++.|++.+-++.. .-||..-....+.-|...|.++.|.-+|... ..|..|
T Consensus 1165 E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~L 1226 (1666)
T KOG0985|consen 1165 EPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKL 1226 (1666)
T ss_pred CccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHH
Confidence 665554 6777888888877755433 2677777777788888888888887777654 237778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCcc------------hhhhhcccccc--ccccHHHHHHHhhhcCcHHHHHHHHHH
Q 046930 803 VKGLCTKGRMEEARSILREMLQSKSV------------LELINRVDIEV--ESESVLNFLISLCEQGSILEAIAILDE 866 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 866 (965)
+..+...|+++.|++..+++...... .++.+--|++. ..+.+-.++..|...|.++|-+.+++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 88888889998888888877654321 12222222222 345567788888889999999998875
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.1e-12 Score=124.33 Aligned_cols=180 Identities=12% Similarity=0.062 Sum_probs=104.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY 699 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 699 (965)
...+|..++.-|...++...|++.|+.+++.++. |-..|..|+++|...+.+.-|+-+|+++.+.. +.|+..|.+|..
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~ 440 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGE 440 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 4556666666666666666666666666665433 66666666666666666666666666666632 233666666666
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCh-hHHHHHHHHHHh
Q 046930 700 NLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN----C-LEPDK-FTVSAVINGFCQ 773 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~-~~~~~l~~~~~~ 773 (965)
+|.+.++.++|+++|...+..| ..+...+..|+++|.+.++.++|...|++-++. | +.|.. .+..-|..-+.+
T Consensus 441 CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 6666666666666666666643 234456666666666666666666666654432 2 12211 122224444556
Q ss_pred cCCHHHHHHHHHHhHhCCCCCChHHHHHHHH
Q 046930 774 KGDMEGALGFFLDFNTKGVSPDFLGFLYLVK 804 (965)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 804 (965)
.+++++|..+...... + .+....-..|..
T Consensus 520 ~~~~~~As~Ya~~~~~-~-~~e~eeak~LlR 548 (559)
T KOG1155|consen 520 MKDFDEASYYATLVLK-G-ETECEEAKALLR 548 (559)
T ss_pred hcchHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 6666666665555432 2 444433333433
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.6e-14 Score=147.48 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=145.5
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHH
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGF 106 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 106 (965)
..+|+..|.+..... ..+..+...++++|...+++++|..+|+.+.+..+..-.+.+.|...+--+ .+ +-++..
T Consensus 335 ~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHHH
Confidence 345666665533222 233455555666666666666666666666655532233334443332211 11 112222
Q ss_pred H-HHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH
Q 046930 107 F-ENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF 185 (965)
Q Consensus 107 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 185 (965)
+ +..++.+ +..+.+|-.++.+|.-+++++.|+++|+++++.++ ....+|..++.-+
T Consensus 409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp---------------------~faYayTLlGhE~ 465 (638)
T KOG1126|consen 409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP---------------------RFAYAYTLLGHES 465 (638)
T ss_pred HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC---------------------ccchhhhhcCChh
Confidence 2 2223333 44455666666666666666666666666655321 1455555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHH
Q 046930 186 SKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAF 265 (965)
Q Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 265 (965)
.....+|.|...|+.++...++ +-.+|.-++..|.++++++.|+-.|+.+.+.+ +.+.+....+...+.+.|+.++|+
T Consensus 466 ~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 466 IATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHH
Confidence 5566666666666666543222 23333445555666666666666666666554 334455555555555666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCH
Q 046930 266 RLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI 345 (965)
Q Consensus 266 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (965)
.++++....... |+ ......+..+...+++++|+..++++.+.- +.+.
T Consensus 544 ~~~~~A~~ld~k-n~------------------------------l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es 591 (638)
T KOG1126|consen 544 QLYEKAIHLDPK-NP------------------------------LCKYHRASILFSLGRYVEALQELEELKELV-PQES 591 (638)
T ss_pred HHHHHHHhcCCC-Cc------------------------------hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchH
Confidence 666666554333 33 333333334444444555555555554432 2334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 046930 346 VMCNILIKALFMVGALEDARALYQAMPEMN 375 (965)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (965)
..+..++..|.+.|+.+.|+.-|..+.+.+
T Consensus 592 ~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 592 SVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455555566666666666666665555543
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.65 E-value=1.6e-09 Score=111.42 Aligned_cols=578 Identities=12% Similarity=0.084 Sum_probs=328.8
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
..+..|...++.+..+|+...-...|++++..-+. .....+|-..+......|-++-++..|++.++.. +..-.
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~e 173 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEARE 173 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHH
Confidence 45678888889999999999999999998876532 2344678888888888999999999999999743 33356
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHH
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE---KAVGILNKM 201 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~ 201 (965)
..+..++..+++++|.+.+..++.... + ....-+.+-..|+.+-....+.-+.- ....+++.+
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~----f----------~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDE----F----------VSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchh----h----------hhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 677778999999999999998875421 0 01112345566777666665543322 234445555
Q ss_pred HHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCC
Q 046930 202 IEDRLRPN--LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDME-KKGIKP 278 (965)
Q Consensus 202 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~ 278 (965)
+.+ -+| ...|.+|..-|.+.|.+++|.++|++.+.. ..+..-+..+.++|+.-....-+.. ++... +.+-+-
T Consensus 240 i~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~-me~a~~~~~n~e 314 (835)
T KOG2047|consen 240 IRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAK-MELADEESGNEE 314 (835)
T ss_pred ccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHH-HhhhhhcccChh
Confidence 543 234 356889999999999999999999998865 3344555666666654222111111 11010 111111
Q ss_pred CHHHHHHHHHHHHh--cCCcchHHH-HHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046930 279 SIVTYNTIINGLCK--VGRTSDAEE-VSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKAL 355 (965)
Q Consensus 279 ~~~~~~~l~~~~~~--~g~~~~a~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (965)
+...+...+..+.. .++..-.-. ++..-+.++..|..-+..
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l------------------------------------ 358 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL------------------------------------ 358 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh------------------------------------
Confidence 11222211111110 011111111 122223333333332222
Q ss_pred HhcCCHHHHHHHHHHchhCCCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 046930 356 FMVGALEDARALYQAMPEMNLVA------NSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISS----VACYNCIINGLC 425 (965)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~ 425 (965)
..|+..+-...|.++.+. +.| -...|..+...|-..|+++.|..+|++..+..-+. ..+|...+.+=.
T Consensus 359 -~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 -YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred -hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 234444444444444332 111 12346666666777777777777777766653332 234555555556
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHH
Q 046930 426 KSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASE 505 (965)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 505 (965)
+..+++.|+++.+......-.|. +. +...+. -+..-+. ....+|...++..-..|-++....
T Consensus 437 rh~~~~~Al~lm~~A~~vP~~~~-------~~-~yd~~~--pvQ~rlh--------rSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHVPTNPE-------LE-YYDNSE--PVQARLH--------RSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred hhhhHHHHHHHHHhhhcCCCchh-------hh-hhcCCC--cHHHHHH--------HhHHHHHHHHHHHHHhccHHHHHH
Confidence 66667777776666654321111 00 000000 0000000 011355555555556677777777
Q ss_pred HHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCcc
Q 046930 506 LYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISST 585 (965)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 585 (965)
+|++++...+. +
T Consensus 499 vYdriidLria--------------------------------------------------------------------T 510 (835)
T KOG2047|consen 499 VYDRIIDLRIA--------------------------------------------------------------------T 510 (835)
T ss_pred HHHHHHHHhcC--------------------------------------------------------------------C
Confidence 77777664322 2
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCc-hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCcccHH-HHH
Q 046930 586 VTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMD-VVDYSTIVAALCR---EGYVNKALDLCAFAKNKGITVNIV-TYN 660 (965)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 660 (965)
+.+..+.+-.+-...-.+++.++++.-...+++++ ..+|+.-+.-+.+ ...++.|..+|++.++ |.+|... +..
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy 589 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 22222233333333344555555555555565554 3567766665554 2478999999999998 4555443 222
Q ss_pred HH-HHHHHhcCcHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh---hhHHHHHH
Q 046930 661 TV-IHSLCRQGCFVEAFRLFDSLERIDMVPS--EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPST---RIYNSFID 734 (965)
Q Consensus 661 ~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~ 734 (965)
.+ ...-.+.|-...|+++++++... +++. ...|+..+.--...=.+..-.++|+++++. -|+. ......++
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHH
Confidence 22 22234568889999999997763 3333 345666553322333345567889998885 3443 33445677
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCC--ChhHHHHHHHHHHhcCC
Q 046930 735 GYCKFGQLEEAFKFLHDLKINCLEP--DKFTVSAVINGFCQKGD 776 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 776 (965)
.=++.|.++.|..+|.-..+. +.| +...|.+.-.-=.++|+
T Consensus 667 lEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 667 LETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 778899999999999877665 466 44566666555578898
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.6e-14 Score=145.66 Aligned_cols=282 Identities=13% Similarity=0.033 Sum_probs=223.7
Q ss_pred cchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCc-cccchHHHHHHHHhcCCHHHHHHHHHhh
Q 046930 534 KKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS-TVTIPVNVLKKLLKAGSVLDVYKLVMGA 612 (965)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 612 (965)
+...|...+...-..+.....+..+++..|...+++++|...|+.+++..+ .+.-..-..+.++...+...---+.+.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 345566666664455566667888999999999999999999999988665 2222222222333333333322333333
Q ss_pred hccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-H
Q 046930 613 EDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-E 691 (965)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~ 691 (965)
.+. .+..+.+|-+++..|.-+++.+.|++.|++.++.++. ...+|+.++.-+.....+|.|...|..++..+ |. -
T Consensus 414 i~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~rhY 489 (638)
T KOG1126|consen 414 IDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD--PRHY 489 (638)
T ss_pred Hhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--chhh
Confidence 333 4457999999999999999999999999999987432 77899999999999999999999999998743 43 4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHH
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVING 770 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 770 (965)
..|..|...|.++++++.|.-.|+++++.+ +-+.+....++..+.+.|+.|+|+.+++++... .| |+.+--..+..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASI 566 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHH
Confidence 566778888999999999999999999853 446778888999999999999999999999984 56 56555566777
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 771 FCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+...+++++|++.++++++ +.|+..+ +..++..|.+.|+.+.|+..|--|.+
T Consensus 567 l~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 8899999999999999966 8898877 88899999999999999999999987
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=1.1e-10 Score=124.31 Aligned_cols=83 Identities=13% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 046930 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATL 251 (965)
Q Consensus 172 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 251 (965)
.|++.+|..++..-...|+.+.|..++.+|.+.|++.+..-|-.|+.+ .++..-+..+++.|...|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 488888888888888888888888888888888887777666666544 67777888888888888888888887766
Q ss_pred HHHHHh
Q 046930 252 IDGVCR 257 (965)
Q Consensus 252 ~~~~~~ 257 (965)
+..+..
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 655544
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.5e-12 Score=127.59 Aligned_cols=510 Identities=11% Similarity=0.012 Sum_probs=286.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
..-+..+.+-+..+.++.-|.-+-+++.... .++.-...+++++.-.|++..|..+...-.-. ..+.......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~----~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~ 88 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLT----NDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLA 88 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc----CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHH
Confidence 3445555555666667777777777765553 23344556777777777777777776654321 3566666777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh-----HH--hhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC-----WI--CGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILN 199 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----~i--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 199 (965)
+.++.+..+|++|..++.... +..+.+.+-. .+ .+.+...++......+..-..+|....+.++|...|.
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGH---VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 777777778887777766321 0011110000 00 0000000111111222222234555566677777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPS 279 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 279 (965)
+++.. |+..+..+...-. ...-.+.+.++.+...... . + ...+.+.-..+|+-...... +
T Consensus 166 ~Al~~----D~~c~Ea~~~lvs--~~mlt~~Ee~~ll~~l~~a----~-------~-~~ed~e~l~~lyel~~~k~~--n 225 (611)
T KOG1173|consen 166 EALLA----DAKCFEAFEKLVS--AHMLTAQEEFELLESLDLA----M-------L-TKEDVERLEILYELKLCKNR--N 225 (611)
T ss_pred HHHhc----chhhHHHHHHHHH--HHhcchhHHHHHHhcccHH----h-------h-hhhHHHHHHHHHHhhhhhhc--c
Confidence 77654 3333332221110 0111222222222221100 0 0 00001111111110000000 0
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 046930 280 IVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVG 359 (965)
Q Consensus 280 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 359 (965)
.. ...+.++ +-+.+...+.........-+....++.+..++.+.+.+.. ++....+..-|..+...|
T Consensus 226 ~~-------~~~r~~~-----~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~ 292 (611)
T KOG1173|consen 226 EE-------SLTRNED-----ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELG 292 (611)
T ss_pred cc-------ccccCch-----hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhc
Confidence 00 0000000 1122333444455555555666667777777777776654 233333444444666666
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIE 439 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (965)
+..+-..+=..+.+.. |..+.+|..++.-|...|..++|.+.|.+....++.-..+|..++..|...|+.+.|+..+..
T Consensus 293 ~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred ccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 6555555555555542 344567777777777778888888888877777777777788888888888888888877777
Q ss_pred HHHCCCCCCHH-hHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc
Q 046930 440 LNEKGLSLYVG-MHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVT 518 (965)
Q Consensus 440 ~~~~~~~~~~~-~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 518 (965)
+.+. -|..+ -+..+..-|.+.++.+-|..++.+...+.|..+ .+.+.++-.....+.+.+|..+|+..+..-....
T Consensus 372 Aarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 372 AARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 6653 12211 122233355667777788888877777776543 4566666677788999999999988763211100
Q ss_pred hhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHh
Q 046930 519 DQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLK 598 (965)
Q Consensus 519 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (965)
..
T Consensus 449 ~e------------------------------------------------------------------------------ 450 (611)
T KOG1173|consen 449 NE------------------------------------------------------------------------------ 450 (611)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHH
Q 046930 599 AGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRL 678 (965)
Q Consensus 599 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 678 (965)
. +.=..+++.|+.+|.+.+.+++|+..|++.+...++ +..++.+++-+|...|+++.|++.
T Consensus 451 -----------------~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 451 -----------------K-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred -----------------c-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHH
Confidence 0 001456788899999999999999999998887544 888999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHH
Q 046930 679 FDSLERIDMVPSEVSYATLIYNLC 702 (965)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~l~~~~~ 702 (965)
|.+.+- +.|+..+-..++..+.
T Consensus 512 fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 512 FHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHh--cCCccHHHHHHHHHHH
Confidence 999877 5677655555554443
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=2.7e-10 Score=120.00 Aligned_cols=422 Identities=15% Similarity=0.074 Sum_probs=256.3
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHhHH
Q 046930 375 NLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLY-VGMHK 453 (965)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 453 (965)
.+..+..+|..+.-+....|+++.+.+.|++...........|+.+...|...|....|..+++........|+ ...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34567888999999999999999999999999887777888999999999999999999999998776532343 33344
Q ss_pred HHHHHHHHc-CChhhHHHHHHHHHhc----ccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHH
Q 046930 454 IILQATFAK-GGVGGVLNFVYRIENL----RSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKG 528 (965)
Q Consensus 454 ~~l~~~~~~-g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (965)
..-..|.+. +.++++++...++... ........+..++-+|...- ...+.. +
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------~~a~~~----s------- 454 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------RQANLK----S------- 454 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------hcCCCh----H-------
Confidence 444444332 4455555555444331 11111122222222211100 000000 0
Q ss_pred HHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHH
Q 046930 529 LDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKL 608 (965)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 608 (965)
.+..........++..++..+.+..++..+...|...++.++|+...+...+.
T Consensus 455 -eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-------------------------- 507 (799)
T KOG4162|consen 455 -ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-------------------------- 507 (799)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------------------
Confidence 00000112223344444455555555556666666666666666555554443
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--C
Q 046930 609 VMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--D 686 (965)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 686 (965)
.+..+...|..++..+...+++.+|+.+.+..... .+.|......-+..-...++.++|+.....++.. .
T Consensus 508 -------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~ 579 (799)
T KOG4162|consen 508 -------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEA 579 (799)
T ss_pred -------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHh
Confidence 33456777877777777788888888888776654 1112222222233333456666666555554331 0
Q ss_pred CCCCHhhHH--HHHHH----HHccCChHHHHHHHHHHHH--------CC---------CCC--C------hhhHHHHHHH
Q 046930 687 MVPSEVSYA--TLIYN----LCKEGQLLDAKKLFDRMVL--------KG---------FKP--S------TRIYNSFIDG 735 (965)
Q Consensus 687 ~~~~~~~~~--~l~~~----~~~~g~~~~A~~~~~~~~~--------~~---------~~~--~------~~~~~~l~~~ 735 (965)
..+-..+.. .+... ....++..+|.+....+.. .| ..| + ...|...++.
T Consensus 580 ~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~ 659 (799)
T KOG4162|consen 580 EYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADL 659 (799)
T ss_pred hhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHH
Confidence 000000000 00000 0011122222222222110 01 111 1 2345677888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHH
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRME 813 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~ 813 (965)
+.+.+..++|.-.+.++... .| ....|...+..+...|..++|.+.|..... +.|+..- ...++.++.+.|+..
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcc
Confidence 88999999999888888774 55 566788888888999999999999999855 8898765 888999999999877
Q ss_pred HHHH--HHHHHHhcCcchhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q 046930 814 EARS--ILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 814 eA~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 870 (965)
-|.. ++..+++ .+| +.+.|+.++..+.+.|+.++|-+.|+....-
T Consensus 736 la~~~~~L~dalr------------~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 736 LAEKRSLLSDALR------------LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHh------------hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7777 9999998 455 5778999999999999999999999976543
No 59
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.63 E-value=2.2e-10 Score=118.89 Aligned_cols=584 Identities=15% Similarity=0.095 Sum_probs=274.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 046930 217 IFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRT 296 (965)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 296 (965)
+.+......|.+|+.+++.+.... .-...|-.+.+.|+..|+++-|+++|-+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 334445566666666666655442 122234445566666666666666664321 233445566666666
Q ss_pred chHHHHHcCCC---CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 046930 297 SDAEEVSKGIL---GDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPE 373 (965)
Q Consensus 297 ~~a~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (965)
++|.++-.... .....|..-..-.-..|++.+|.+++-.+. .|+ ..|.+|-+.|..+..+++.++-..
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 66666544331 222333333344455555555555443221 122 234456666666666655544321
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH
Q 046930 374 MNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHK 453 (965)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 453 (965)
. .-..|...+..-+...|++..|...|-+... |..-..+|...+-|++|.++-+. .| -.+.....
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v 943 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEKHV 943 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHH
Confidence 1 1123445556666666777777666654432 44455556666666665554332 11 11211111
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcC
Q 046930 454 IILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEG 533 (965)
Q Consensus 454 ~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 533 (965)
.++ +.++-+-+.|..++.+. .+...-++.-+..+.++-|..+-+-..+...
T Consensus 944 ~fl--waksiggdaavkllnk~---------gll~~~id~a~d~~afd~afdlari~~k~k~------------------ 994 (1636)
T KOG3616|consen 944 AFL--WAKSIGGDAAVKLLNKH---------GLLEAAIDFAADNCAFDFAFDLARIAAKDKM------------------ 994 (1636)
T ss_pred HHH--HHHhhCcHHHHHHHHhh---------hhHHHHhhhhhcccchhhHHHHHHHhhhccC------------------
Confidence 111 12222222233333221 1111222333444555555554443332211
Q ss_pred cchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcC-ccccchHHH----HHHHHhcC-CHHHHHH
Q 046930 534 KKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEIS-STVTIPVNV----LKKLLKAG-SVLDVYK 607 (965)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~-~~~~a~~ 607 (965)
.....+++....-.|++++|-+.|-...+.+ -++++...+ -...++.| ++++|..
T Consensus 995 -------------------~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~ 1055 (1636)
T KOG3616|consen 995 -------------------GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVE 1055 (1636)
T ss_pred -------------------ccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHH
Confidence 0111222222333455555555554443322 233332221 11333333 3443332
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 046930 608 LVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM 687 (965)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 687 (965)
++.+..+|..|.++-+.--+. . -...+..-.+.-...|++-+|..++-++.
T Consensus 1056 ----------------------mfi~dndwa~aervae~h~~~-~--l~dv~tgqar~aiee~d~~kae~fllran---- 1106 (1636)
T KOG3616|consen 1056 ----------------------MFIHDNDWAAAERVAEAHCED-L--LADVLTGQARGAIEEGDFLKAEGFLLRAN---- 1106 (1636)
T ss_pred ----------------------HhhhcccHHHHHHHHHhhChh-h--hHHHHhhhhhccccccchhhhhhheeecC----
Confidence 344556677766655432211 0 11233333444455666666666554432
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHH----------------HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046930 688 VPSEVSYATLIYNLCKEGQLLDAKKLFDR----------------MVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHD 751 (965)
Q Consensus 688 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 751 (965)
+|+.. +..|...+-+..|+.+.+. ..++| .-.+..+..-+.-..++|++.+|...+-+
T Consensus 1107 kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lk 1180 (1636)
T KOG3616|consen 1107 KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLK 1180 (1636)
T ss_pred CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhh
Confidence 34421 2223344444444443322 22333 23455566666777788888888877765
Q ss_pred hhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcch
Q 046930 752 LKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQSKSVL 829 (965)
Q Consensus 752 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 829 (965)
+-.. ..+. ..|+.- .+++|.++--+. +.|+. ......+.++-..|..+.|.+++--.-
T Consensus 1181 inrd--st~n---d~l~e~-----~~~kaadl~ikf----l~~d~nme~i~aa~~al~~~~~~e~aael~l~f~------ 1240 (1636)
T KOG3616|consen 1181 INRD--STDN---DALAEH-----CTEKAADLSIKF----LMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD------ 1240 (1636)
T ss_pred hccC--CCCc---HHHHHH-----HHHHHHhhhhhh----cCCccchhhHHhcchhhhcccccHHHHHHHHHhh------
Confidence 5221 1111 122221 234444443332 33433 334445556666777777766553211
Q ss_pred hhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhccccc-cccccccccc
Q 046930 830 ELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESLNAV-ASVASLSNQQ 908 (965)
Q Consensus 830 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 908 (965)
-...-+.++++...|.+|.++.+++...-.+.........+...+++.+.. ++ .-..+..+..
T Consensus 1241 -------------~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli---~vdviaaidl~ie 1304 (1636)
T KOG3616|consen 1241 -------------LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELI---DVDVIAAIDLMIE 1304 (1636)
T ss_pred -------------hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCcccccc---chhHHHHHHHHHh
Confidence 123345667778888888888877632111111111111122223333222 22 1222444556
Q ss_pred cCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHH
Q 046930 909 TDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEM 957 (965)
Q Consensus 909 ~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~ 957 (965)
.+.+++++... -+++..|-...|..+.++ +.+.|+..+|+.+|++-
T Consensus 1305 n~qwdk~idta---k~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1305 NDQWDKAIDTA---KKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQH 1351 (1636)
T ss_pred cccHHHHHHHH---HhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 77777766443 333445666667777677 99999999999988763
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.3e-15 Score=153.44 Aligned_cols=261 Identities=20% Similarity=0.180 Sum_probs=106.0
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 046930 15 SLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF 94 (965)
Q Consensus 15 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (965)
.+...+ ...|++++|++.++..+.....+.+...+..++......++++.|+..|++++..+ +.++..+..++..
T Consensus 13 ~~A~~~-~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLL-YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccc-
Confidence 455555 68899999999886655433124456667777777788888999999999988877 5566777777777
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 95 CKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
...+++++|.+++++..+. .+++..+...+..+.+.++++++..+++++.... ..+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~ 145 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-------------------AAPDS 145 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T----------------------T-
T ss_pred ccccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-------------------CCCCC
Confidence 6888999999888887764 3566677778888888899999998888876531 12457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDG 254 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (965)
...|..++..+.+.|+.++|+++|+++++..+. |......++..+...|+.+++..++....+.. +.|...+..+..+
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~ 223 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 778888888888899999999999999887544 67778888888888888888888888877664 4556677788888
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC
Q 046930 255 VCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG 305 (965)
Q Consensus 255 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 305 (965)
+...|+.++|+.+|++..+... .|......++.++...|+.++|..+...
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHT--------------
T ss_pred hccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 8888999999999998887533 2777788888888888888888877653
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=1.1e-12 Score=140.01 Aligned_cols=285 Identities=11% Similarity=-0.006 Sum_probs=210.6
Q ss_pred hhhcHHHHHHHHHhhhhcCccccchHHHHH-HHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 046930 565 CLNDVTNALLFIKNMKEISSTVTIPVNVLK-KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDL 643 (965)
Q Consensus 565 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 643 (965)
..|+++.|.+......+..+++....-++. .....|+.+.|...+..+....|.............+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 346777777766665555444444443333 4478888888888887776654443233333447788889999999999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHccCChHHHHHHHHH
Q 046930 644 CAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSE-------VSYATLIYNLCKEGQLLDAKKLFDR 716 (965)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (965)
++.+.+..+. +...+..+...|.+.|++++|++++..+.+....++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9999988644 7788888999999999999999999999986544322 1233333333344455666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh
Q 046930 717 MVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796 (965)
Q Consensus 717 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (965)
+.+. .+.++.....++..+...|+.++|.+.+++..+. .|+.... ++.+....++.+++++..+++.+ ..|++
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~ 327 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDT 327 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCC
Confidence 6543 3557888889999999999999999999999873 5565332 23333456999999999999865 67776
Q ss_pred HH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 797 LG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 797 ~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
.. +..++..+.+.|++++|.+.|+++++ ..|+...+..++..+.+.|+.++|.++|++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~------------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK------------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 65 77899999999999999999999998 567877777888889999999999999998543
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=2.9e-12 Score=137.63 Aligned_cols=292 Identities=12% Similarity=-0.034 Sum_probs=206.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHH
Q 046930 390 YCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVL 469 (965)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~ 469 (965)
....|+++.|.+.+.+..+..+.+...+...+.+..+.|+++.|...+.++.+. .|+....
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~----------------- 154 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNIL----------------- 154 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchH-----------------
Confidence 346788888888887777766666666666677777778888888888877654 2333211
Q ss_pred HHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhc
Q 046930 470 NFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKEN 549 (965)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 549 (965)
+.-.....+...|+++.|...++.+.+..
T Consensus 155 ----------------~~~~~a~l~l~~~~~~~Al~~l~~l~~~~----------------------------------- 183 (409)
T TIGR00540 155 ----------------VEIARTRILLAQNELHAARHGVDKLLEMA----------------------------------- 183 (409)
T ss_pred ----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------
Confidence 01111234566777777777777766632
Q ss_pred CCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHH
Q 046930 550 GLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVA 629 (965)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 629 (965)
|.++.++..++.
T Consensus 184 --------------------------------------------------------------------P~~~~~l~ll~~ 195 (409)
T TIGR00540 184 --------------------------------------------------------------------PRHKEVLKLAEE 195 (409)
T ss_pred --------------------------------------------------------------------CCCHHHHHHHHH
Confidence 446778888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHHHH-HHHH---HHHhcCcHHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHH
Q 046930 630 ALCREGYVNKALDLCAFAKNKGITVNIVTYN-TVIH---SLCRQGCFVEAFRLFDSLERIDM---VPSEVSYATLIYNLC 702 (965)
Q Consensus 630 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 702 (965)
.+...|++++|.+.+..+.+.+.. +...+. .... .....+..+++.+.+..+.+... +.+...+..++..+.
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999987654 322221 1111 11333334444556666555331 136788888899999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-h--hHHHHHHHHHHhcCC
Q 046930 703 KEGQLLDAKKLFDRMVLKGFKPSTRI---YNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-K--FTVSAVINGFCQKGD 776 (965)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~ 776 (965)
..|++++|.+.+++.++. .|+... .....-.....++.+.+.+.+++..+. .|+ . ....++++.+.+.|+
T Consensus 275 ~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHccc
Confidence 999999999999999986 333331 122222334457889999999998874 664 4 566789999999999
Q ss_pred HHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 777 MEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+++|.+.|++.......|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999644455789998888999999999999999999999865
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.1e-12 Score=140.85 Aligned_cols=289 Identities=10% Similarity=0.005 Sum_probs=215.9
Q ss_pred HHHhhhcHHHHHHHHHhhhhcCccccch-HHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHH
Q 046930 562 QYLCLNDVTNALLFIKNMKEISSTVTIP-VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKA 640 (965)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 640 (965)
.....|+++.|.+.+.+..+..+.+... ...+..+...|+.+.|...+.......|.............+...|+++.|
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3455678888888887776665554433 333457778888888888888887666654445555668888999999999
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHH----HHHHHHHccCChHHHHHHHHH
Q 046930 641 LDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYA----TLIYNLCKEGQLLDAKKLFDR 716 (965)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~ 716 (965)
...++.+.+..+. +...+..++..+...|++++|.+.+..+.+.+.. +...+. .........+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999998644 7778899999999999999999999999997643 322222 111122333444445556666
Q ss_pred HHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 046930 717 MVLKG---FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFT---VSAVINGFCQKGDMEGALGFFLDFNTK 790 (965)
Q Consensus 717 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (965)
+.+.. .+.++..+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+++.+++..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk- 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK- 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH-
Confidence 66541 1237889999999999999999999999999985 565432 12222223456888999999999865
Q ss_pred CCCCChH--H-HHHHHHHHhcCCCHHHHHHHHH--HHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHH
Q 046930 791 GVSPDFL--G-FLYLVKGLCTKGRMEEARSILR--EMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILD 865 (965)
Q Consensus 791 ~~~p~~~--~-~~~l~~~~~~~g~~~eA~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 865 (965)
..|+.. . ..++++.+.+.|++++|.++|+ .+++ ..|+.+.+..++..+.+.|+.++|.++++
T Consensus 328 -~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------------~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 328 -NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK------------EQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred -hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 577666 5 7789999999999999999999 4665 56788778889999999999999999999
Q ss_pred HHh
Q 046930 866 EIG 868 (965)
Q Consensus 866 ~~~ 868 (965)
+..
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 853
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=4.3e-12 Score=135.38 Aligned_cols=198 Identities=14% Similarity=0.036 Sum_probs=152.2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHH-------HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIV-------TYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS 690 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 690 (965)
|.++.+...+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++.+-+. .+.+
T Consensus 184 P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~ 262 (398)
T PRK10747 184 PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQ 262 (398)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCC
Confidence 4567888888889999999999999999998876542221 2333333333444556666666665432 2456
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHH
Q 046930 691 EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVIN 769 (965)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 769 (965)
+.....+...+...|+.++|.+.+++..+. +|+...... .+....|+.+++++.+++..+. .|+ ...+..++.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l--~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgr 336 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLL--IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQ 336 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH--HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 778888999999999999999999999884 556543322 2334558999999999999885 674 567888999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+...|++++|.+.|+++.+ ..|+...+..++.++.+.|+.++|..+|++.+.
T Consensus 337 l~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999965 789999988899999999999999999999876
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.1e-10 Score=108.89 Aligned_cols=389 Identities=12% Similarity=0.092 Sum_probs=231.6
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
..+.|+..|+.++.-... .+......+-..++.++...|++++|...|..+...+ .++.+.+..++.++...|.|.
T Consensus 33 ls~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HhcccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHHHHHHHHHH
Confidence 456788888887776442 2222233455667777788888888888888877765 556677888888888888888
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
+|..+-.++ +.++.....+...-.+.++-++-....+.+.. ....-.+|
T Consensus 109 eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-------------------------~~EdqLSL 157 (557)
T KOG3785|consen 109 EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-------------------------TLEDQLSL 157 (557)
T ss_pred HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-------------------------hHHHHHhH
Confidence 888777664 34444455555666667776666655554432 22334456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTA-IIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD 260 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 260 (965)
.......-.+.+|+++|.+.+.. .|+-...|. +.-+|.+..-++-+.+++.-..+. ++.++...|.......+.=.
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhc
Confidence 66666666788899999888865 334444443 344566777777777777776665 24445555555544455444
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCcchHHHHHcCC-CCCHHHHHHHHHHhhhcCChhHHHHHHH
Q 046930 261 LDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK-----VGRTSDAEEVSKGI-LGDVVTYSTLLHGYIEEDNVNGILETKQ 334 (965)
Q Consensus 261 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (965)
-..|+.-.+.+.+.+-.. | ..+.-+++ -..-+.|++++.++ ..-+.+...++--|.+.+++.+|+.+.+
T Consensus 235 gr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred cchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 444555555555442211 1 11111122 22445677766544 2234455666777888888888887776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHchhCCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 046930 335 RLEEAGIQMDIVMCNILIKALFM-------VGALEDARALYQAMPEMNLVANSV-TYSTMIDGYCKLGRIEEALEIFDEL 406 (965)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (965)
.+. +.++.-|..-.-.+.. .....-|.+.|+..-+.+..-|.. --..+...+.-..++++.+-.+..+
T Consensus 310 dl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 310 DLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred hcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 552 2223222222222222 233555666776665554433322 2334455555666778888777777
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 407 RRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
..-...+...-..++.+++..|.+.+|.++|-++....+ .+..+|.+++.-
T Consensus 386 ~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 386 ESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLAR 436 (557)
T ss_pred HHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHH
Confidence 766666666666788888888888888888877654322 334444444443
No 66
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.57 E-value=7.2e-11 Score=122.32 Aligned_cols=308 Identities=15% Similarity=0.093 Sum_probs=214.3
Q ss_pred HHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHH
Q 046930 595 KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVE 674 (965)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 674 (965)
.+...|..+.|.+.+.+... ....+.+-...+.|.+|+.+++.+...+ .-...|..+...|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 56667777777766654322 1223445556789999999999988763 234456777889999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 046930 675 AFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKI 754 (965)
Q Consensus 675 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 754 (965)
|.++|.+. ..++-.+..|.+.|++++|.++-.+.. |-......|.+-+.-+-+.|++.+|.++|-.+.
T Consensus 784 ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 99999664 235566788999999999999887765 334456677777888899999999999987763
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhh
Q 046930 755 NCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELI 832 (965)
Q Consensus 755 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 832 (965)
.|+. .+..|-+.|..++.+++.++- .|+. .|...++.-|...|++++|...|-++-+
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------- 910 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------- 910 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------
Confidence 6665 357888999999999988774 4554 4577788999999999999998866643
Q ss_pred hccccccccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCc---ccchhhhhhhhhhhhhhhcccccccccccccccc
Q 046930 833 NRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQ---RFGTDRAIETQNKLDECESLNAVASVASLSNQQT 909 (965)
Q Consensus 833 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (965)
+..-+..|..++.|++|-.+.+.-.-...... .|-...+-+.+.++...+ +..-..+...|..
T Consensus 911 -----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~---gll~~~id~a~d~ 976 (1636)
T KOG3616|consen 911 -----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH---GLLEAAIDFAADN 976 (1636)
T ss_pred -----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh---hhHHHHhhhhhcc
Confidence 45566677788999999888764211111111 112233345555554444 2233335566777
Q ss_pred CcccccccccccchhcccCCCchhhhHHHHhhhccchHHHHHHHHHHHhccccc
Q 046930 910 DSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCSKGELQKANKLMKEMLSSFKE 963 (965)
Q Consensus 910 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 963 (965)
+.++-|+...+-.++.. .|..+..+. .-+...|++++|-+.|-+++.++.-
T Consensus 977 ~afd~afdlari~~k~k-~~~vhlk~a--~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAKDK-MGEVHLKLA--MFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred cchhhHHHHHHHhhhcc-CccchhHHh--hhhhhccchhhhhHhhHHHhhcccc
Confidence 77777776555455444 454443332 2388999999999999999887653
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=5.8e-12 Score=118.15 Aligned_cols=233 Identities=14% Similarity=0.115 Sum_probs=172.6
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHhcCChh
Q 046930 23 KRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV-KYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
-++++++|+..|-++++.+ +.+..+...|++.|-++|..+.|+.+.+...+... +......+...+++-|...|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4578888888888888744 55666777888888888888888888888776531 11223456778888888888888
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
.|.++|....+.+ ..-..+...++.+|-...+|++|+++.+++.+.+.++..+ .-...|..|
T Consensus 125 RAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----------------eIAqfyCEL 186 (389)
T COG2956 125 RAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----------------EIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----------------HHHHHHHHH
Confidence 8888888887644 3344577788888888888888888888888765433211 013446667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL 261 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 261 (965)
...+....++++|..++.++.+.+++ .+.+-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 77777778888888888888876544 44455567788888888888888888888876555566777888888888888
Q ss_pred hHHHHHHHHHHHCCC
Q 046930 262 DCAFRLLEDMEKKGI 276 (965)
Q Consensus 262 ~~A~~~~~~~~~~g~ 276 (965)
++....+..+.+...
T Consensus 266 ~~~~~fL~~~~~~~~ 280 (389)
T COG2956 266 AEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHHHHHccC
Confidence 888888888877633
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.54 E-value=3.2e-12 Score=142.74 Aligned_cols=81 Identities=12% Similarity=-0.079 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNEL 142 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 142 (965)
+++|...++++++.+ |.++.++..++.++...|++++|+..|+++++.+ |.++..+..++.++...|++++|+..
T Consensus 320 ~~~A~~~~~~Al~ld---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 320 MIKAKEHAIKATELD---HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344444444444444 4444444444444444444444444444444443 33334444444444444444444444
Q ss_pred HHHHHH
Q 046930 143 FVRMES 148 (965)
Q Consensus 143 ~~~~~~ 148 (965)
++++++
T Consensus 395 ~~~Al~ 400 (553)
T PRK12370 395 INECLK 400 (553)
T ss_pred HHHHHh
Confidence 444444
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.3e-07 Score=102.44 Aligned_cols=734 Identities=13% Similarity=0.121 Sum_probs=366.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhh
Q 046930 43 TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVS 122 (965)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 122 (965)
.+.-...|..-.+.+..+|++++|-++-....+.= -.++.+.+..-..=...|++.--+++|..++..+ +-|...
T Consensus 356 LaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgI---LRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG--kLNk~E 430 (1666)
T KOG0985|consen 356 LAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGI---LRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG--KLNKYE 430 (1666)
T ss_pred CccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhh---hcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc--cccHHH
Confidence 33334455666667778888888888776544321 2233344433333344566666666666666655 334333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-C----HHHH------HHHHHHHHhcCCH
Q 046930 123 YTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-D----TVSY------TILLDGFSKEGTI 191 (965)
Q Consensus 123 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~----~~~~------~~l~~~~~~~g~~ 191 (965)
-..+.+.-...|+.+-...++.+=+ +-|++-...-+.| | ..+| +..+.+|+..|++
T Consensus 431 TLEL~RpVL~Q~RkqLlekWl~EdK-------------LeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf 497 (1666)
T KOG0985|consen 431 TLELCRPVLQQGRKQLLEKWLKEDK-------------LECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQF 497 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhh-------------hhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcch
Confidence 2333333333444333333222110 0001100011111 1 1111 2334455556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 192 EKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
+++.-... +.|..||. -.+++...+ -..+.+.+....+.... +...-++.+...+...+....+...+-+.
T Consensus 498 ~KiilY~k---KvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLda 568 (1666)
T KOG0985|consen 498 KKIILYAK---KVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDA 568 (1666)
T ss_pred hHHHHHHH---HcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 55544433 34677774 344555544 57888888888887653 23445677778888888888888887777
Q ss_pred HHCCCCCCHHHH-HHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC---C---CCC
Q 046930 272 EKKGIKPSIVTY-NTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAG---I---QMD 344 (965)
Q Consensus 272 ~~~g~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~ 344 (965)
++. ..|+.... +.++..- -.+-.+-|..++-.-.-...-+..+...|.+.|-+..|++.+..+.... + ..+
T Consensus 569 LK~-~~Pd~g~LQTrLLE~N-L~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~ 646 (1666)
T KOG0985|consen 569 LKL-NSPDEGHLQTRLLEMN-LVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLN 646 (1666)
T ss_pred hcC-CChhhhhHHHHHHHHH-hccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCC
Confidence 764 34555433 3333322 2333444444432211111226677888899999999998776653321 0 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCC
Q 046930 345 IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM------------SIS 412 (965)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~ 412 (965)
+. .+ -.|...-.++++.+.++.|...++..|..+...+..-|...=-.+.-+++|+..... ...
T Consensus 647 pE---wL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~se 722 (1666)
T KOG0985|consen 647 PE---WL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSE 722 (1666)
T ss_pred HH---HH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhcccc
Confidence 11 11 124445567899999999998888888887777777777766667777777765432 234
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------CC--------CCCCHHhHHHHHHHHHHcCChhhHHHHH
Q 046930 413 SVACYNCIINGLCKSGMVDMATEVFIELNE------------KG--------LSLYVGMHKIILQATFAKGGVGGVLNFV 472 (965)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~--------~~~~~~~~~~~l~~~~~~g~~~~a~~~~ 472 (965)
++......+.+.++.|++.+..++-++-.- .. +..|.+.+..-+-.|.-.++..+-++.+
T Consensus 723 Dpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~y 802 (1666)
T KOG0985|consen 723 DPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIY 802 (1666)
T ss_pred CchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHH
Confidence 677777888888888888877766544211 00 0111111111111111111111111111
Q ss_pred HHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCC
Q 046930 473 YRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLV 552 (965)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (965)
- .+.+|...+.+... +..-...++.++-+-... .|..|. ..+..-.-+.++.....+.++..+.++.-.
T Consensus 803 V--QkvNps~~p~VvG~----LLD~dC~E~~ik~Li~~v-~gq~~~----deLv~EvEkRNRLklLlp~LE~~i~eG~~d 871 (1666)
T KOG0985|consen 803 V--QKVNPSRTPQVVGA----LLDVDCSEDFIKNLILSV-RGQFPV----DELVEEVEKRNRLKLLLPWLESLIQEGSQD 871 (1666)
T ss_pred H--hhcCCcccchhhhh----hhcCCCcHHHHHHHHHHH-hccCCh----HHHHHHHHhhhhHHHHHHHHHHHHhccCcc
Confidence 1 11222222221111 122222222222221111 111111 122222233333334444444444443333
Q ss_pred chHHHHHHHHHHhhhc-HHH------------------------HHHHHHh------hhhcCccccchHHHHHHHHhcCC
Q 046930 553 EPMISKFLVQYLCLND-VTN------------------------ALLFIKN------MKEISSTVTIPVNVLKKLLKAGS 601 (965)
Q Consensus 553 ~~~~~~~~~~~~~~~~-~~~------------------------A~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 601 (965)
......++..|.-.++ ++. |.-.|++ +......-......++-+.+..+
T Consensus 872 ~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D 951 (1666)
T KOG0985|consen 872 PATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSD 951 (1666)
T ss_pred hHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccC
Confidence 3333333333333221 111 1111110 00001111111223333444444
Q ss_pred HHHH-----------HHHHHhhhcc-C-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHH-----HHHHH
Q 046930 602 VLDV-----------YKLVMGAEDS-L-PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVT-----YNTVI 663 (965)
Q Consensus 602 ~~~a-----------~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~l~ 663 (965)
.+-. .++++++.+. + ...|+...+.-+.++...+-+.+-++++++++-. |+.++ -|.|+
T Consensus 952 ~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLi 1028 (1666)
T KOG0985|consen 952 PDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLI 1028 (1666)
T ss_pred hHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHH
Confidence 3322 2344444332 2 2246777788889999999999999999998743 33322 23333
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 046930 664 HSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLE 743 (965)
Q Consensus 664 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 743 (965)
-+ +-.-+.....++.+++-..+ .|+ +...+...+-+++|..+|++.- .+....+.|++ .-+.+|
T Consensus 1029 Lt-Aikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ld 1092 (1666)
T KOG0985|consen 1029 LT-AIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLD 1092 (1666)
T ss_pred HH-HhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHH
Confidence 33 33345666777777765533 232 2233445666788888877642 24444444443 345566
Q ss_pred HHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 046930 744 EAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREML 823 (965)
Q Consensus 744 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 823 (965)
.|.+..++.-+ +..|..++.+-.+.|...+|++-|-++ .|+..|..++....+.|.|++=++++.-+.
T Consensus 1093 RA~efAe~~n~------p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1093 RAYEFAERCNE------PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred HHHHHHHhhCC------hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66665555432 345667777777777777777766543 133346667777777777777777666555
Q ss_pred hcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHH
Q 046930 824 QSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAI 863 (965)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 863 (965)
++.. +|..+ ..|+.+|.+.+++.|-++.
T Consensus 1161 kk~~----------E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1161 KKVR----------EPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred Hhhc----------Cccch--HHHHHHHHHhchHHHHHHH
Confidence 4321 22222 2355556666666665544
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-09 Score=106.32 Aligned_cols=188 Identities=15% Similarity=0.048 Sum_probs=124.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHH
Q 046930 630 ALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709 (965)
Q Consensus 630 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 709 (965)
.+...+++..|+.+-++.++.+.. +...|..-+..+...+++++|.-.|..++... +.+..+|..|+..|...|++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 344456666676666666665332 44555555666777777777777777776632 2336677777777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHH-HHHHhcC-CHHHHHHHHHHhhhCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 046930 710 AKKLFDRMVLKGFKPSTRIYNSFI-DGYCKFG-QLEEAFKFLHDLKINCLEPDK-FTVSAVINGFCQKGDMEGALGFFLD 786 (965)
Q Consensus 710 A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g-~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (965)
|.-+-+...+. ++.+..+...++ ..+...- --++|.+++++.+. ++|+. .+.+.++..+...|..++++.++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 77766666654 344555555553 3333322 23677777777776 47764 3666777777777888888888887
Q ss_pred hHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 787 FNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 787 ~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+. ..||......|+..+...+.+++|++.|..++.
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 744 677777777788888888888888888887776
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=9.7e-12 Score=111.42 Aligned_cols=200 Identities=20% Similarity=0.153 Sum_probs=163.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
+...++-.|.+.|++..|.+-++++++.+ |.+..+|..++..|.+.|..+.|.+.|+++++.. |.+-.+.|+.+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhH
Confidence 34456667889999999999999999988 7888899999999999999999999999999877 677778888898
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.+|..|++++|...|+++..... ...-..+|..+.-+..+.|+++.|...|.+.++..+.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~-------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~- 171 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPA-------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ- 171 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCC-------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-
Confidence 89999999999999999887421 1223567778887888899999999999999887654
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+.+...+.....+.|++..|...++.....+ .++....-..|..-...|+.+.+.++=.++...
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56667778888888999999999888888776 477888777888888889988888776666654
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.1e-10 Score=111.68 Aligned_cols=294 Identities=13% Similarity=0.030 Sum_probs=190.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 046930 322 EEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALE 401 (965)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (965)
..|++.+|.+...+..+.+.. ....|..-+.+--+.|+.+.+-.++.++.+..-.++.....+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 357778888877777666533 3455666667777889999999999998876324555667777888889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccc
Q 046930 402 IFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSE 481 (965)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~ 481 (965)
-.+++.+..|.++........+|.+.|++.....++..+.+.+.-.++..-..-
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le-------------------------- 228 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE-------------------------- 228 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999888754443321111
Q ss_pred cchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHH
Q 046930 482 IYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLV 561 (965)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (965)
T Consensus 229 -------------------------------------------------------------------------------- 228 (400)
T COG3071 229 -------------------------------------------------------------------------------- 228 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHH
Q 046930 562 QYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKAL 641 (965)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 641 (965)
..+|..+++-....+..+.-.
T Consensus 229 -----------------------------------------------------------~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 229 -----------------------------------------------------------QQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHhccccchHHH
Confidence 111112222122222222223
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 046930 642 DLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKG 721 (965)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (965)
..+++...+ .+.++..-.+++.-+.+.|+.++|.++..+..+....|+ ...+ -.+.+-++...=++..++.++.
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~- 323 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ- 323 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh-
Confidence 334433332 233444445555566666777777777766666554444 1111 1244556666666666666654
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 722 FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 722 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
.+.++..+.+|+..|.+.+.+.+|...|+..++ ..|+..+|+.++.++.+.|+.++|.+++++.+-
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 234456666777777777777777777776666 367777777777777777777777777776653
No 73
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.5e-10 Score=115.43 Aligned_cols=421 Identities=15% Similarity=0.041 Sum_probs=263.6
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
...|||+.|+..|.+++..+ |++...|..-..+|...|+|++|++--.+-++.+ |.=+..|+..|.++.-.|+|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccHH
Confidence 47899999999999999876 5688889999999999999999999999999999 566789999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH---HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH-HH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN---ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT-VS 177 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~ 177 (965)
+|+..|.+-++.+ |.+...+..+..++.......+.. .++..+.. .+..+...........|......|.. ..
T Consensus 88 eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~-~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN-LPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc-ChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999977 667778888888772211110000 01111111 00000000000000000000000000 00
Q ss_pred ---HHHHHHHHHhcCCHH-HHHHHHHHHHH-CCCCC----------------------CHHHHHHHHHHHHhcCChHHHH
Q 046930 178 ---YTILLDGFSKEGTIE-KAVGILNKMIE-DRLRP----------------------NLITYTAIIFGFCKKGKLEEAF 230 (965)
Q Consensus 178 ---~~~l~~~~~~~g~~~-~A~~~~~~~~~-~~~~~----------------------~~~~~~~l~~~~~~~g~~~~A~ 230 (965)
...++.+.......+ .....-..+.. .+..| -..-...++.+..+..+++.|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 000111110000000 00000000000 00000 1122456777888888888899
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCcchHHHHH
Q 046930 231 TVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII-------NGLCKVGRTSDAEEVS 303 (965)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~-------~~~~~~g~~~~a~~~~ 303 (965)
+.+....... .+..-++....+|...|.+...........+.|.+ ....++.+. .+|.+.++++.++..+
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9888888775 45555666667788888888887777777766543 233333333 3445556666666665
Q ss_pred cCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHH
Q 046930 304 KGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTY 383 (965)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (965)
........+ -....+....++++...+...-.++..-... ..-.+.+.+.|++..|+..|.++++.+ +.|...|
T Consensus 322 ~kaLte~Rt----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~-r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 322 QKALTEHRT----PDLLSKLKEAEKALKEAERKAYINPEKAEEE-REKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHhhhhcC----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHH-HHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 432100000 1122233444555554444433332221112 223667888999999999999999887 5667789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHH
Q 046930 384 STMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFA 461 (965)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (965)
.....+|.+.|.+..|++-.+..++.+|+....|..-+.++....++++|++.|.+.++. .|+..-+...+.-|..
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 5776666666665554
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=1.6e-11 Score=122.96 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=170.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
......+..++..+...|++++|...++++++.+ |.+..++..++..+...|++++|++.|++++... +.+...+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~ 102 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVL 102 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Confidence 3446678888899999999999999999998887 7788899999999999999999999999999876 6677788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..++..+...|++++|...|+++..... .......+..+..++...|++++|...|.+..+
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPL-------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccc-------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999999999986421 123455677788889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 204 DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
..+. +...+..+...+...|++++|...++++.... +.+...+..++..+...|+.++|..+.+.+...
T Consensus 164 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 164 IDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred hCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7543 56778888899999999999999999988773 556667777788888899999999988877653
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=2.9e-11 Score=121.11 Aligned_cols=199 Identities=17% Similarity=0.143 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..+..++..+ ...|++++|+..+.+++... +.+...+..++..+...|++++|.+.|+++++.+ |.+..++..+
T Consensus 32 ~~~~~la~~~-~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGY-LEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHH
Confidence 3455555544 55566666666666655433 2334455555555566666666666666665554 4455555555
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
+..+...|++++|++.|++++.....+.....+..++.++...|++++|...+.++.+..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------- 165 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-------------------- 165 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------
Confidence 666666666666666666655432112233345555555556666666666666555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 123445555555555566666666666655554 22244444455555555566666555555444
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.47 E-value=5e-11 Score=106.93 Aligned_cols=209 Identities=16% Similarity=0.076 Sum_probs=177.8
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.....|+-.| .++|++..|...++++++.+ |.+..++..++..|.+.|+.+.|.+.|++++..+ |.+.+++|..
T Consensus 36 ~arlqLal~Y-L~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNY 109 (250)
T COG3063 36 KARLQLALGY-LQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhh
Confidence 3677788888 89999999999999999876 5677788899999999999999999999999998 8999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
+-.+|.+|++++|.+.|++++.....+.-..+|.+++-+..+.|+++.|...|++.++..+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp------------------- 170 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP------------------- 170 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-------------------
Confidence 9999999999999999999998664555566899999999999999999999999998642
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
-.+.+...+.....+.|++-.|...++.....+. ++....-..|+.-...|+.+.+.+.=.++.+. -|....|.
T Consensus 171 --~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 171 --QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred --CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3466777888889999999999999999988876 68888888888888899998888877777665 34444443
No 77
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.9e-10 Score=112.09 Aligned_cols=288 Identities=15% Similarity=0.133 Sum_probs=194.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhH
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE 138 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (965)
-.|+|.+|++...+..+.+ +.....|..-+++-...|+++.|-.++.++.+.. -.++........+.+...|+++.
T Consensus 96 ~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchh
Confidence 4689999999998877776 5556677777788888899999999999988753 13445566677788888999999
Q ss_pred HHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------H
Q 046930 139 VNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL-------I 211 (965)
Q Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~ 211 (965)
|..-..++.+.++ .++.+......+|.+.|++.....++..+.+.+.-.+. .
T Consensus 172 A~~~v~~ll~~~p---------------------r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 172 ARENVDQLLEMTP---------------------RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred HHHHHHHHHHhCc---------------------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 9998888887653 56777888888999999999999999999888765443 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 212 TYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLC 291 (965)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 291 (965)
+|..+++=....+..+.-...++.....- ..++..-..++.-+.++|+.++|.++.++..+++..|+. ..++ .+.
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l 305 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRL 305 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhc
Confidence 34445444444444444455666665442 445666677778888899999999999998888766551 1111 222
Q ss_pred hcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 046930 292 KVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAM 371 (965)
Q Consensus 292 ~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (965)
+-++. ..-++..+...+.. +.++..+..|...|.+.+.|.+|...|+..
T Consensus 306 ~~~d~------------------------------~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 306 RPGDP------------------------------EPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred CCCCc------------------------------hHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333 33333333333332 223455566666666666666666666655
Q ss_pred hhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046930 372 PEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM 409 (965)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (965)
.+. .|+..++..+.+++.+.|+..+|.+++++....
T Consensus 355 l~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 355 LKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred Hhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 553 366666666666666666666666666665533
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=9.8e-12 Score=130.71 Aligned_cols=249 Identities=16% Similarity=0.151 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CC
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERI-----DM-VPSE-VSYATLIYNLCKEGQLLDAKKLFDRMVLK-----G-FK 723 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 723 (965)
.+...+...|...|+++.|..++++.++. |. .|.. ...+.+...|...+++++|..+|++++.. | -.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566888889999999999998888763 21 2332 33445778899999999999999998762 2 12
Q ss_pred CC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHhC---CC
Q 046930 724 PS-TRIYNSFIDGYCKFGQLEEAFKFLHDLKIN-----CL-EPDK-FTVSAVINGFCQKGDMEGALGFFLDFNTK---GV 792 (965)
Q Consensus 724 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 792 (965)
|. ..+++.|+.+|.+.|++++|...++++.+. |. .|+. ..++.++..+...+++++|+.++.+..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 457788999999999999999888876543 22 2232 35677888899999999999999987542 12
Q ss_pred CCCh----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccc-cccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 793 SPDF----LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVE-SESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 793 ~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
.+++ .++..|+..|...|+++||.++|+++++...... .+.++. ...+++++..+.+.+++++|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~----~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL----GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc----cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 2332 2388899999999999999999999998532110 011222 336778888898999999999999985
Q ss_pred hhccCCCcccchhhhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccch
Q 046930 868 GYMLFPTQRFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGE 946 (965)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~ 946 (965)
.. .. +..+.. +|+....|..+++ |.+.|+
T Consensus 436 ~~------------------------------------------------i~-~~~g~~-~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 436 KD------------------------------------------------IM-KLCGPD-HPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HH------------------------------------------------HH-HHhCCC-CCchHHHHHHHHHHHHHccc
Confidence 21 11 122233 6777777777777 999999
Q ss_pred HHHHHHHHHHHhc
Q 046930 947 LQKANKLMKEMLS 959 (965)
Q Consensus 947 ~~~A~~~~~~~~~ 959 (965)
+++|+++.+.++.
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998873
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=2.1e-11 Score=136.20 Aligned_cols=205 Identities=10% Similarity=0.067 Sum_probs=159.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhc---------CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKI---------GKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
+.+++|+..|+++++.+ |.++.++..++.++... +++++|...++++++.+ |.+..++..++.++.
T Consensus 275 ~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 35679999999999998 78888888888776533 34789999999999887 778888888999999
Q ss_pred hcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 046930 132 MLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLI 211 (965)
Q Consensus 132 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (965)
..|++++|+..|+++++.+| .+..++..+..++...|++++|...++++++.++. +..
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P---------------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSP---------------------ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred HccCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 99999999999999988642 45677888888899999999999999999987654 333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 046930 212 TYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPS-IVTYNTIINGL 290 (965)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~ 290 (965)
.+..++..+...|++++|+..++++.+...+.+...+..+..++...|++++|...+.++... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 344445556778999999999999887653335556777788888999999999999887655 233 33445555555
Q ss_pred HhcC
Q 046930 291 CKVG 294 (965)
Q Consensus 291 ~~~g 294 (965)
...|
T Consensus 486 ~~~g 489 (553)
T PRK12370 486 CQNS 489 (553)
T ss_pred hccH
Confidence 6555
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.45 E-value=6e-10 Score=105.42 Aligned_cols=335 Identities=12% Similarity=0.131 Sum_probs=229.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh-hHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV-SYT 124 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 124 (965)
+..-..-++..+...|++.+|+.-|..+++.+ |.+..+++..+..|+..|+-.-|+.-+.++++. .||.. +..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d---p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD---PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHH
Confidence 44446678888999999999999999999999 889999999999999999999999999999985 57765 556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSY--TILLDGFSKEGTIEKAVGILNKMI 202 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 202 (965)
.-+.++.+.|++++|..-|+.++...+..+..--. .....+....| ...+..+...|+...|++....++
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea--------qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA--------QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH--------HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 77888999999999999999999876532211000 00001111122 223344566889999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 046930 203 EDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVT 282 (965)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 282 (965)
+..+- +...|..-..+|...|++..|+.-++.+.+.. ..++.++..+-..+...|+.+.++...++.++. .||...
T Consensus 183 Ei~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~ 258 (504)
T KOG0624|consen 183 EIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKL 258 (504)
T ss_pred hcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchhh
Confidence 86544 77778888889999999999999998888775 456667777778888999999999999998886 455432
Q ss_pred HHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcC
Q 046930 283 YNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMC---NILIKALFMVG 359 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g 359 (965)
... .|-+...+.+.++ -+......+++.++++..+...+..+......+ ..+-.++...+
T Consensus 259 Cf~---~YKklkKv~K~le--------------s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 259 CFP---FYKKLKKVVKSLE--------------SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHH---HHHHHHHHHHHHH--------------HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 211 1111111111111 012233456666666666666665443222222 23344455567
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVAC 416 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 416 (965)
++.+|++...++++.. +.|..++..-..+|.-..+++.|+.-|+.+.+.++.+..+
T Consensus 322 ~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred CHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 7777777777776643 2335666666777777777777777777777766655543
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=7.6e-12 Score=117.16 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
+-..++++|.+.|.+.+|.+.|+..++.. +.++++..+.++|.+..++..|+.+|.+.++. +|.++.....+.+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~----~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF----PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC----CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 33445555555555555555555555543 23344445555555555555555555555543 2444444445555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
++-..++.++|.++|+.+.+.. +-++.+...+...|.-.++.+-|+..|+++++.|+.
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~---------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~- 356 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH---------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ- 356 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC---------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-
Confidence 5555555555555555555432 123444444444455555555555555555555554
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD--EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTI 286 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 286 (965)
++..|+.+.-+|.-.++++-++..|.+....--.|+ ..+|..+.......||+..|.+.|+-.+..+.. +...++.|
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNL 435 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNL 435 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhH
Confidence 555555555555555555555555555544322222 234444444445555555555555555544322 34455555
Q ss_pred HHHHHhcCCcchHHHHHc
Q 046930 287 INGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 287 ~~~~~~~g~~~~a~~~~~ 304 (965)
.-.-.+.|+.++|..++.
T Consensus 436 avL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHhhcCchHHHHHHHH
Confidence 555555555555555543
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=7.2e-11 Score=120.23 Aligned_cols=234 Identities=15% Similarity=0.041 Sum_probs=167.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
.+..+.++..+..++......|+ +..+..++.++...|++++|+..|+++++.+ |.++.+|+.++..+...|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHH
Confidence 35557788888888865444333 4567888888999999999999999999998 888999999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
+|++.|+++++.+ |.+..+|..++.++...|++++|++.|++..+.+ |+.......
T Consensus 116 ~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----------------------P~~~~~~~~ 171 (296)
T PRK11189 116 AAYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----------------------PNDPYRALW 171 (296)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------CCCHHHHHH
Confidence 9999999999876 6677788999999999999999999999998764 332211222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC---CCCHhHHHHHHHHH
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL---GL---VADEFVYATLIDGV 255 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~ 255 (965)
.......+++++|.+.|.+..... .|+...+ .......|+...+ ..+..+.+. .+ +.....|..+...+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 222345678999999997766432 2232222 2233345666544 344444421 10 12345788889999
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 256 CRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289 (965)
Q Consensus 256 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 289 (965)
.+.|++++|...|++....++.........++..
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 9999999999999999987544333344444443
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.3e-09 Score=106.74 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-------H
Q 046930 348 CNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNC-------I 420 (965)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------l 420 (965)
...++++..+..+++.|.+-+....+.. .+..-++....+|...|.+.+.+...+...+.+.....-++. +
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445666666667777777777666643 344445556666777777766666666655554333333333 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC
Q 046930 421 INGLCKSGMVDMATEVFIELNEKGLS 446 (965)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (965)
+.+|.+.++++.++..|.+.+.....
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 34555567777777777776654333
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.2e-08 Score=104.48 Aligned_cols=148 Identities=14% Similarity=0.028 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHccCCh
Q 046930 636 YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFD--------SLERIDMVPSEVSYATLIYNLCKEGQL 707 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 707 (965)
.+..|.+++...-+.....+....-.++......|+++.|++++. .+.+.+. .+.+...++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 466666666666555333234455556666677777777777777 4444333 344555666667777776
Q ss_pred HHHHHHHHHHHHC---C--CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 046930 708 LDAKKLFDRMVLK---G--FKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGAL 781 (965)
Q Consensus 708 ~~A~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 781 (965)
+.|.+++.+.+.. . .++ -..++.-++..-.+.|+.++|...++++.+.+ .+|..+...++.+|+.. +.++|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 6676666666541 0 011 12334444555556788888888888888742 44667777788777544 567777
Q ss_pred HHHHHh
Q 046930 782 GFFLDF 787 (965)
Q Consensus 782 ~~~~~~ 787 (965)
.+-..+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 665543
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=5.5e-11 Score=125.15 Aligned_cols=252 Identities=21% Similarity=0.205 Sum_probs=193.9
Q ss_pred ccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHh----CCC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhc--
Q 046930 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRN----HGT-LPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDE-- 76 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 76 (965)
++|.....+..+...| ..+|+++.|+..+.++++. .|. .+. ......++..|...+++.+|+.+|+.+++.
T Consensus 194 ~~P~~~~~~~~La~~y-~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMY-AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5678888888888876 8999999999999999986 121 222 233455888999999999999999998773
Q ss_pred ---CCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHc-----CCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 77 ---NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL-----GALKPNVV-SYTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 77 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
+..+|....+++.++.+|.+.|++++|...+++++.. +..+|.+. .+..++..+...+++++|..++++..
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3345777888999999999999999999999998863 11234444 45677788999999999999999887
Q ss_pred HCCCccchhhhhhHHhhhhhhcCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHH
Q 046930 148 SEGLKFDVVFYSCWICGQMVDKGI-K-PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR-------LRPNLITYTAIIF 218 (965)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~ 218 (965)
+.-. + ..|. . --..+++.|...|...|++++|.++|++++... ..-....++.+..
T Consensus 353 ~i~~--~-------------~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 353 KIYL--D-------------APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred HHHH--h-------------hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 6411 0 0111 1 125679999999999999999999999998641 1112455677888
Q ss_pred HHHhcCChHHHHHHHHHHHHc----C--CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046930 219 GFCKKGKLEEAFTVFKKVEDL----G--LVADEFVYATLIDGVCRRGDLDCAFRLLEDME 272 (965)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 272 (965)
.|.+.+++.+|.++|.+.... | .+....+|..|...|.+.|+++.|.++.+.+.
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 899999999999998876532 2 22335689999999999999999999988876
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.8e-08 Score=98.17 Aligned_cols=419 Identities=10% Similarity=-0.014 Sum_probs=253.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC-----------------CCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENV-----------------KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA 115 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 115 (965)
++......+.+..|..-|..++.... -.|.+.+.-...+.+|...++-++|+.......+..
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~- 127 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL- 127 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-
Confidence 33444445566666666665544211 013455666778888999999999988887654321
Q ss_pred CCCCHhhHHHHHHHH-HhcCChhHHHHHHHHHHHCCCc-cchhhhhh---HHhh------hhhhcCCCCCHHHHHHHHHH
Q 046930 116 LKPNVVSYTSLVIAL-CMLGRVNEVNELFVRMESEGLK-FDVVFYSC---WICG------QMVDKGIKPDTVSYTILLDG 184 (965)
Q Consensus 116 ~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~---~i~~------~~~~~~~~~~~~~~~~l~~~ 184 (965)
...-.+.++..+ -+.++..++.--+...+...|- .++. ... .+.+ .|.....+|........+.+
T Consensus 128 ---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i-~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika 203 (564)
T KOG1174|consen 128 ---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVI-EALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKA 203 (564)
T ss_pred ---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHH-HHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHH
Confidence 111222233222 2333443444444444433210 0000 000 0000 22233344444444444444
Q ss_pred HHh--cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 046930 185 FSK--EGTIEKAVGILNKMIED-RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL 261 (965)
Q Consensus 185 ~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 261 (965)
+++ .++...|...+-.+... -.+-|+.....+...+...|+.++|+..|++....+ +.+........-.+.+.|++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCH
Confidence 433 34444444444333322 245577778888888888899988888888887664 22222233333345677888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC----CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 046930 262 DCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG----ILGDVVTYSTLLHGYIEEDNVNGILETKQRLE 337 (965)
Q Consensus 262 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (965)
+....+...+....- -....|..-+.......+++.|+.+-.+ -+.+...+..-+..+...++.++|.-.|+...
T Consensus 283 e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 888877777765421 1344455555566667777777766432 24566667667777888888888888888877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCHH
Q 046930 338 EAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMI-DGYC-KLGRIEEALEIFDELRRMSISSVA 415 (965)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~ 415 (965)
... +.+...|.-|+..|...|++.+|..+-...... ++.+..+...++ ..+. ...--++|..++++.+...|.-..
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 654 456778888888888888888887766655442 234455555443 2222 233457888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhccccc
Q 046930 416 CYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEI 482 (965)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~ 482 (965)
+.+.++..+...|..+.++.++++.+.. .||...+..+...+...+..+++++.+....+.+|..
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8888888888888888888888888765 6777777777777766666666666666666665543
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.5e-08 Score=99.23 Aligned_cols=148 Identities=14% Similarity=0.034 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHhcCCH
Q 046930 671 CFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFD--------RMVLKGFKPSTRIYNSFIDGYCKFGQL 742 (965)
Q Consensus 671 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 742 (965)
.+.+|.+++...-.....-...+...++.....+|+++.|++++. .+.+.+..|-.+ ..+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 466677776666553311223445555566677777777777777 555544444433 3455556665554
Q ss_pred HHHHHHHHHhhhC--C---CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHH
Q 046930 743 EEAFKFLHDLKIN--C---LEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEAR 816 (965)
Q Consensus 743 ~~A~~~~~~~~~~--~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~ 816 (965)
+-|..++.+++.. . ..+. ..++.-++..-.+.|+-++|...++++.+.+ .+|......++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 4444444333221 0 1222 1233334444456677777777777775522 33444566677777665 556666
Q ss_pred HHHHHH
Q 046930 817 SILREM 822 (965)
Q Consensus 817 ~~~~~~ 822 (965)
.+-.++
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 554443
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=1.4e-10 Score=118.14 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=23.5
Q ss_pred hhhhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 932 NFCYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 932 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
..++.++..|.+.|++++|+..|+++++..|.|
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 345555555888888888888888888877643
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=5e-11 Score=111.80 Aligned_cols=228 Identities=12% Similarity=0.028 Sum_probs=187.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQG 670 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 670 (965)
.+.+.|.+.|-+.+|.+.++......|- +.+|..|..+|.+..++..|+.++.+.++. .+-++.....+.+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~--~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH--PDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 4445566666666666666665555554 566777888999999999999999998887 3435555566789999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 046930 671 CFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLH 750 (965)
Q Consensus 671 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 750 (965)
+.++|.++|+...+.. +.+.....++...|.-.++++-|+.+|+++++.| ..++..|++++-+|.-.+++|-++..|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999999854 3456777778888999999999999999999998 4588899999999999999999999999
Q ss_pred HhhhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 751 DLKINCLEPD--KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 751 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
+++...-.|+ ..+|.+|.......|++.-|.+.|+-.+. ..|++.. +++|+..-.+.|++++|..++..+...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9987654565 46899999999999999999999998854 4566544 999998889999999999999988773
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=3.1e-08 Score=106.30 Aligned_cols=295 Identities=15% Similarity=0.076 Sum_probs=150.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--
Q 046930 181 LLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR-- 258 (965)
Q Consensus 181 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 258 (965)
...++...|++++|++.++.-... +......+......+.+.|+.++|..+|+.+++.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 344578899999999999886654 33244555677889999999999999999999987 45555666666655222
Q ss_pred ---CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHH
Q 046930 259 ---GDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQR 335 (965)
Q Consensus 259 ---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (965)
.+.+....+++++...- |.......+.-.+.....+.... ...+..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~-----------------------------~~yl~~ 136 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERL-----------------------------DEYLRP 136 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHH-----------------------------HHHHHH
Confidence 24666777788776652 32222222221111111111111 111222
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC--------------CCcccH--HHHHHHHHHHHHcCCHHHH
Q 046930 336 LEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEM--------------NLVANS--VTYSTMIDGYCKLGRIEEA 399 (965)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~~~~~~A 399 (965)
++..|+| .+++.|-..|......+-...++...... .-+|.. .++..+...|...|++++|
T Consensus 137 ~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 2233322 12222222222222222222222221100 011222 1233344444555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcc
Q 046930 400 LEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLR 479 (965)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~ 479 (965)
++.+++++++.|..+..|..-++.+.+.|++.+|...++.....+ .-|...-......+.+.|..++|...+....+.+
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 555555555555555555555555555555555555555554442 2333333334444445555555555554443333
Q ss_pred ccc----c--h--hHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 046930 480 SEI----Y--D--IICNDVISFLCKRGSSEVASELYMFMRK 512 (965)
Q Consensus 480 ~~~----~--~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 512 (965)
.+. . . ......+.+|.+.|++..|++.|..+.+
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 0 0 2223557788999999999999887765
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.36 E-value=3.1e-09 Score=100.74 Aligned_cols=314 Identities=12% Similarity=0.080 Sum_probs=215.0
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
|.+..-...++..++..|++.+|+..|-.+++.+ |.+-.++..-+..|...|+-..|+.-+.++++.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----------- 101 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----------- 101 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----------
Confidence 6677788899999999999999999999999865 455557888888999999999999999999985
Q ss_pred HHhhhhhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHH------------HHHHHHhcCC
Q 046930 161 WICGQMVDKGIKPDTV-SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN--LITYTA------------IIFGFCKKGK 225 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~------------l~~~~~~~g~ 225 (965)
.||-. +-..-...+.++|.+++|..-|+..+...+.-+ ...+.. .+..+...|+
T Consensus 102 -----------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 102 -----------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred -----------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 45532 223344568899999999999999998754311 111211 2233445567
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC
Q 046930 226 LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG 305 (965)
Q Consensus 226 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 305 (965)
...|+.....+++.. +-|...|..-..+|...|++..|+.-++...+.... +...+..+-..+...|+.+.++...+.
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777777654 446666666667777777777777666666554322 444555555666666666665544321
Q ss_pred ---CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCccc---
Q 046930 306 ---ILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVAN--- 379 (965)
Q Consensus 306 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 379 (965)
+.|+....... | +.+.+..+.++.| ......++|-+++.-.+...+.. |.
T Consensus 249 CLKldpdHK~Cf~~---Y---KklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~e--p~~~~ 304 (504)
T KOG0624|consen 249 CLKLDPDHKLCFPF---Y---KKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNE--PEETM 304 (504)
T ss_pred HHccCcchhhHHHH---H---HHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcC--Ccccc
Confidence 12222111100 0 0111111111111 12345667777777777776654 33
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046930 380 --SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKG 444 (965)
Q Consensus 380 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 444 (965)
...+..+..++...+++.+|++...++++..|.++.++..-+.+|.....++.|+.-|+.+.+.+
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22455566777788999999999999999999999999999999999999999999999998763
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=4.1e-08 Score=103.91 Aligned_cols=394 Identities=16% Similarity=0.154 Sum_probs=212.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--------CCCCHhhHHHHHH
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA--------LKPNVVSYTSLVI 128 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~~l~~ 128 (965)
|...|+.+.|.+..+.+... .+|..++..+.+.++.|-|.-.+-.|....| -.++ ..-.....
T Consensus 738 yvtiG~MD~AfksI~~IkS~--------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD--------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh--------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 45668888887777655332 4688888888887777776655443321100 0121 11122223
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.....|..++|..+|++-.+ |..|=..|...|.+++|.++-+.--+..
T Consensus 809 LAieLgMlEeA~~lYr~ckR-----------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--- 856 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-----------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIH--- 856 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-----------------------------HHHHHHHHHhcccHHHHHHHHhhcccee---
Confidence 34567888888888888765 3344555677788888877755432221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH----------HcCC---------CCCHhHHHHHHHHHHhcCCHhHHHHHHH
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVE----------DLGL---------VADEFVYATLIDGVCRRGDLDCAFRLLE 269 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 269 (965)
-..||.....-+...++.+.|++.|++.- ...+ ..|...|.-....+-..|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 23556666666666777777777776532 1110 1122233333333344566666666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 046930 270 DMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCN 349 (965)
Q Consensus 270 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 349 (965)
...+ |.++++..+-+|+.++|.++-+.- .|..+...+.+.|-..|++.+|+..|-++.. +.
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEES-GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 5432 445555556667777766665432 3444555667777777777777777665432 11
Q ss_pred HHHHHHH---------------hcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH---------H
Q 046930 350 ILIKALF---------------MVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD---------E 405 (965)
Q Consensus 350 ~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------~ 405 (965)
..|+.|- ...+.-.|-++|++..- -+..-+..|-+.|.+.+|+++-- -
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 2222111 11122233333333221 01122344666677766665321 1
Q ss_pred HHhc-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcc-cc-
Q 046930 406 LRRM-SI-SSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLR-SE- 481 (965)
Q Consensus 406 ~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~-~~- 481 (965)
+.+. ++ .++...+.-...++...++++|..++-...+. ...+.. +...++.-..++-+.|.-.. .+
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQL-CKNRNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHH-HhcCCCchhHHHHHhcCcCcCCCc
Confidence 2222 22 36777777777777778888887777655432 112222 22233332333333332111 11
Q ss_pred ---cchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchh
Q 046930 482 ---IYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWL 537 (965)
Q Consensus 482 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (965)
....+...+++.+.++|.+..|-+-|.++-.. ...++++++.|+.+.
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 12367888889999999999998888765331 234555666666544
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.5e-09 Score=97.64 Aligned_cols=319 Identities=14% Similarity=0.127 Sum_probs=185.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH-HHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY-TSLVIAL 130 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 130 (965)
..+..+.+..++.+|++++....+.+ |.+...++.++.+|....++..|...|++.-... |...-| ....+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSL 88 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHH
Confidence 44444566677788888887777776 6666777788888888888888888888776532 333322 2445666
Q ss_pred HhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 131 CMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL--DGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.+.+.+..|+.+...|... ++...-..-+ .+....+++..+..+.++.... .
T Consensus 89 Y~A~i~ADALrV~~~~~D~-----------------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n 142 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-----------------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---N 142 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-----------------------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---C
Confidence 7777777777777666431 2211111111 2233466777777776666532 2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-----------
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK----------- 277 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----------- 277 (965)
+..+.+.......+.|+++.|.+-|+...+.+.-.....|+..+ ++.+.|+++.|+++..+++++|+.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 45556666666677777777777777777655444455666554 344567777777777777776542
Q ss_pred --CCH---------------HHHHHHHHHHHhcCCcchHHHHHcCCCC------CHHHHHHHHHHhhhcCChhHHHHHHH
Q 046930 278 --PSI---------------VTYNTIINGLCKVGRTSDAEEVSKGILG------DVVTYSTLLHGYIEEDNVNGILETKQ 334 (965)
Q Consensus 278 --~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (965)
||. ..+|.-...+.+.|+++.|.+.+..+|| |+.|...+.-.- ..+++....+-+.
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQ 300 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHH
Confidence 111 1122223344567788888877777765 455555443322 2233444444445
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCc-ccHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 046930 335 RLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLV-ANSVTYSTMIDGYCK-LGRIEEALEIFDEL 406 (965)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~ 406 (965)
.++..++ ....|+..++-.||+..-++.|-.++.+-...... .+...| .|+.+++. .-..++|.+-++.+
T Consensus 301 FLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 301 FLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555543 44567777777788888888887777654332211 112222 33344333 33455555544443
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=8.9e-08 Score=101.41 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=143.2
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CC
Q 046930 174 DTVSYTILLD--GFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG---------LV 242 (965)
Q Consensus 174 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~ 242 (965)
|..+-..+++ .|...|+.+.|.+..+-+. +...|..+.+.+.+..+++-|.-.+..|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3445555553 3567899999988877665 56789999999999988888877766554221 01
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC--CCCHHHHHHHHHHh
Q 046930 243 ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI--LGDVVTYSTLLHGY 320 (965)
Q Consensus 243 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l~~~~ 320 (965)
++ .+-..........|.+++|+.+|++.... ..|=..|...|.+++|.++-+.- ..-..||.....-+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 11 11122222335679999999999988753 23444667789999999886533 12345666667777
Q ss_pred hhcCChhHHHHHHHHHHH----------cCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHH
Q 046930 321 IEEDNVNGILETKQRLEE----------AGI---------QMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSV 381 (965)
Q Consensus 321 ~~~~~~~~a~~~~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 381 (965)
-..++.+.|++.|++... ..+ ..|...|.--..-+-..|+.+.|+.+|..+.+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 778888888888875421 110 11222222222222335555555555554433
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 382 TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELN 441 (965)
Q Consensus 382 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (965)
|..+++..|-.|+.++|-++-++ ..|..+-..+++.|-..|++.+|..+|.++.
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44555555566666666655443 2344555566666666677777766666653
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=9.3e-08 Score=102.71 Aligned_cols=284 Identities=13% Similarity=0.094 Sum_probs=168.8
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC---
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG--- 98 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 98 (965)
...|+++.|+..+..... -+.....+....+..+.+.|++++|..+|..+++.+ |.+..-|..+..+..-..
T Consensus 15 ~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhcccc
Confidence 678999999999877443 234456677888899999999999999999999999 788888888888774443
Q ss_pred --ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH
Q 046930 99 --KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN-EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT 175 (965)
Q Consensus 99 --~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (965)
..+.-.++|++..... |...+...+.-.+.....+. .+...+..++..|+ +
T Consensus 90 ~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-----------------------P 143 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-----------------------P 143 (517)
T ss_pred cccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-----------------------c
Confidence 4566677888776643 33333322222222222333 23334444554443 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 176 VSYTILLDGFSKEGTIEKAVGILNKMIED----R----------LRPNL--ITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
.+++.|-..|....+..-..+++...... + -+|+. +++..+...|...|++++|+++.++.++.
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33444444444444444444444443321 0 11222 34455566666777777777777777766
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCC-------C---
Q 046930 240 GLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILG-------D--- 309 (965)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~--- 309 (965)
. |..+..|..-...+-+.|++.+|.+.++.....+.. |...-+..+..+.+.|+.++|.+++..+.. |
T Consensus 224 t-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 T-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 3 223556666667777777777777777777766433 444445555566677777777766543311 1
Q ss_pred ---HHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 046930 310 ---VVTYSTLLHGYIEEDNVNGILETKQRLEE 338 (965)
Q Consensus 310 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (965)
.+-....+.+|.+.|++..|++.|..+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11122345567777777777766665543
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.8e-08 Score=93.68 Aligned_cols=323 Identities=15% Similarity=0.089 Sum_probs=213.6
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
|.+.+..+ .+..+|.+|++.+..-.... +.+......++.+|....++..|..+|++..... |.-..--.--+.
T Consensus 13 ftaviy~l-I~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRL-IRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHH-HHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHH
Confidence 44555555 55668999999887755433 3366678889999999999999999999998877 555555556677
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 93 GFCKIGKPELAIGFFENAISLGALKPNVVSYT--SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
.+.+.+.+.+|+.+...+.+ .++...-. .-..+....+++..+..+.++....
T Consensus 87 SLY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--------------------- 141 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--------------------- 141 (459)
T ss_pred HHHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---------------------
Confidence 88899999999999988764 23333222 2223455678888898888877542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------
Q 046930 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV-------- 242 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 242 (965)
.+..+.+...-...+.|+++.|.+-|+.+.+-+.-....+|+..+ +..+.|+++.|++...++++.|+.
T Consensus 142 --n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIG 218 (459)
T KOG4340|consen 142 --NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIG 218 (459)
T ss_pred --CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCcc
Confidence 345555555555678999999999999999864443566777655 556779999999999999887642
Q ss_pred -----CCH---------------hHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcchH--
Q 046930 243 -----ADE---------------FVYATLIDGVCRRGDLDCAFRLLEDMEKK-GIKPSIVTYNTIINGLCKVGRTSDA-- 299 (965)
Q Consensus 243 -----~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~a-- 299 (965)
+|+ ..+|.-...+.+.|+++.|.+.+-+|.-+ ..+.|+.|...+.-.-.. +++.+.
T Consensus 219 m~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~ 297 (459)
T KOG4340|consen 219 MTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFE 297 (459)
T ss_pred ceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHH
Confidence 111 12333333456789999999999888643 234566666655443332 222222
Q ss_pred -HHHHcCC-CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHc
Q 046930 300 -EEVSKGI-LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGI-QMDIVMCNILIKAL-FMVGALEDARALYQAM 371 (965)
Q Consensus 300 -~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 371 (965)
+..+-++ |-...|+..++-.|+++.-++-|-+++.+-..... -.+...|+ |+.++ ...-..++|.+-++.+
T Consensus 298 KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 298 KLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 2223333 44567899999999999999888877654221111 11233333 23333 2345566666655544
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=7.8e-10 Score=112.99 Aligned_cols=226 Identities=15% Similarity=0.148 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 046930 590 VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ 669 (965)
Q Consensus 590 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 669 (965)
+.....+++.|.+.+|.-.++.....-| .+..+|..|+.+....++-..|+..+++.++..+. |....-.|.-.|...
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhh
Confidence 3444456666666666666666555544 47999999999999999999999999999998544 888899999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhhHHHHH-----------HHHHccCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHH
Q 046930 670 GCFVEAFRLFDSLERIDMVPSEVSYATLI-----------YNLCKEGQLLDAKKLFDRMVL-KGFKPSTRIYNSFIDGYC 737 (965)
Q Consensus 670 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 737 (965)
|.-.+|+..++.-++.. |. |..+. ..+.....+....++|-++.. .+..+|+.+...|+-.|-
T Consensus 367 g~q~~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhHHHHHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 99999999999987643 11 00010 011122233445566655554 455578889999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHH
Q 046930 738 KFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEA 815 (965)
Q Consensus 738 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA 815 (965)
-.|++++|++.|+.++. ++| |...||.|+.++....+.++|+..|.++++ ++|...- .++|+..|...|.++||
T Consensus 442 ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred cchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999998 588 567999999999999999999999999966 9998765 78899999999999999
Q ss_pred HHHHHHHHhcC
Q 046930 816 RSILREMLQSK 826 (965)
Q Consensus 816 ~~~~~~~~~~~ 826 (965)
+++|-+++...
T Consensus 518 ~~hlL~AL~mq 528 (579)
T KOG1125|consen 518 VKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhh
Confidence 99999998743
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=5.6e-08 Score=103.93 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=30.1
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS-FTFCSLVYSFCSQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (965)
|.....|..+...+ ...|+++.|...+....+......+. ......+..+...|++++|.+.++++++.+
T Consensus 3 p~~~~a~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 3 PDFALGHAAAALLL-LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CccHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34444444444333 34445555545455444433222221 112222333444555555555555555544
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=4.1e-09 Score=107.88 Aligned_cols=238 Identities=14% Similarity=0.126 Sum_probs=133.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
+++.|++.+|.-.|+.+++.+ |.+.++|..||.....+++-..|+..++++++.+ |.|..+...|+-.|...|.-
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhH
Confidence 344455555555555555554 4455555555555555555555555555555444 34444444444445555555
Q ss_pred hHHHHHHHHHHHCCCcc--------chhhhh--hH------------HhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 046930 137 NEVNELFVRMESEGLKF--------DVVFYS--CW------------ICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKA 194 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~--------~~~~~~--~~------------i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 194 (965)
.+|..++++-+...+.- +..... ++ ........+..+|+.++..|...|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 55555444443322100 000000 00 000112333346777777777778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 195 VGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
..+|+.++...+. |...||.|...+....+.++|+..|.++++..+.- +.+...|.-+|...|.+++|.+.|-..+..
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 8888888876544 67778888888888888888888888888774222 334444555778888888888887766532
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCcchHHH
Q 046930 275 ---------GIKPSIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 275 ---------g~~~~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
+..++...|..|=.++.-.++.+-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 111233456655555555555554443
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=1e-07 Score=101.97 Aligned_cols=304 Identities=11% Similarity=0.049 Sum_probs=204.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.....+..++..+...|+.+.+...+....+..+......+.....+..+...|++++|.+.+++++... |.+...+.
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~ 81 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALK 81 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHH
Confidence 3456677788888888999999999988887764323345566667778899999999999999999875 56665555
Q ss_pred HHHHHHHhc----CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 125 SLVIALCML----GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILN 199 (965)
Q Consensus 125 ~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 199 (965)
. ...+... +..+.+.+.+..... ..|+ ......+...+...|++++|.+.++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAP----------------------ENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCc----------------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 3333333 444445444443111 1233 4455567778889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH--hHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV-ADE--FVYATLIDGVCRRGDLDCAFRLLEDMEKKGI 276 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 276 (965)
+.++..+. +...+..+..++...|++++|...+++....... ++. ..|..+...+...|++++|..++++......
T Consensus 139 ~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 139 RALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99998644 6778888999999999999999999998876422 222 2455678889999999999999999865432
Q ss_pred -CCCHHHH-H--HHHHHHHhcCCcchHHHH---Hc---CC-CC--CHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC-
Q 046930 277 -KPSIVTY-N--TIINGLCKVGRTSDAEEV---SK---GI-LG--DVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ- 342 (965)
Q Consensus 277 -~~~~~~~-~--~l~~~~~~~g~~~~a~~~---~~---~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 342 (965)
.+..... + .++..+...|....+.+. .. .. +. ..........++...|+.+.|...++.+......
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~ 297 (355)
T cd05804 218 ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA 297 (355)
T ss_pred CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 1222211 1 233333444533333332 11 11 11 1122234666778899999999999888653322
Q ss_pred -------CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC
Q 046930 343 -------MDIVMCNILIKALFMVGALEDARALYQAMPEM 374 (965)
Q Consensus 343 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (965)
..........-.+...|++++|.+.+......
T Consensus 298 ~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 298 DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11223333444567899999999999888764
No 101
>PLN02789 farnesyltranstransferase
Probab=99.11 E-value=5.4e-08 Score=98.52 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG-NMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
++..+-..+ ...++.+.|+..+.+++... |.+..+|.....++...| ++++++..++.+++.+ |.+..+|+..
T Consensus 39 a~~~~ra~l-~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R 112 (320)
T PLN02789 39 AMDYFRAVY-ASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHH
Confidence 333333443 67889999999999999866 345556777777777777 6899999999999999 8899999999
Q ss_pred HHHHHhcCCh--hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 91 VSGFCKIGKP--ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 91 ~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
+-++.+.|+. ++++.+++++++.+ +.|..+|...+.++...|+++++++.++++++.++
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~----------------- 173 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV----------------- 173 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-----------------
Confidence 9888888874 78899999999987 78899999999999999999999999999998753
Q ss_pred cCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHH
Q 046930 169 KGIKPDTVSYTILLDGFSKE---GT----IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK----GKLEEAFTVFKKVE 237 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~ 237 (965)
.|..+|+....++.+. |. .++.++...+++...+. |..+|+-+..++... ++..+|...+.++.
T Consensus 174 ----~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 174 ----RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred ----CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 5677787777666554 22 24677778788887655 788888888887763 34567888888877
Q ss_pred HcCCCCCHhHHHHHHHHHHh
Q 046930 238 DLGLVADEFVYATLIDGVCR 257 (965)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~ 257 (965)
..+ +.+......|++.|+.
T Consensus 249 ~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 249 SKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccc-CCcHHHHHHHHHHHHh
Confidence 754 4566778888888875
No 102
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.10 E-value=2.7e-05 Score=84.77 Aligned_cols=555 Identities=16% Similarity=0.112 Sum_probs=262.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHH
Q 046930 186 SKEGTIEKAVGILNKMIEDRLRPNLIT-YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 264 (965)
...+++.+|+.-..++.++. ||... -..-.-.+.+.|+.++|..+++.....+. .|..|...+-.+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 45788999999999998873 34322 22223456789999999999988877663 4888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc----hHHHHHcCCCCCHHHHHHHHHHhhhcC-Ch---------hHHH
Q 046930 265 FRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTS----DAEEVSKGILGDVVTYSTLLHGYIEED-NV---------NGIL 330 (965)
Q Consensus 265 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~l~~~~~~~~-~~---------~~a~ 330 (965)
..+|++.... .|+......+..+|.+.+.+. .|.++++.+|.+...+-.+++.+.... .. .-|.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999999876 567777777888888877654 466778888877777666666554321 11 1122
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH-HchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 046930 331 ETKQRLEEAGIQMD-IVMCNILIKALFMVGALEDARALYQ-AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRR 408 (965)
Q Consensus 331 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (965)
+.++.+.+.+-+.. ..=.......+...|.+++|..++. ...+.-..-+...-+.-+..+...+++.+-.++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 23333332220000 0101111112233445555555542 222211111222233334444445555555555555444
Q ss_pred cCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHH
Q 046930 409 MSISSVACYNCIINGLCKSGMVDMATEVFIELNE-KGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIIC 487 (965)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 487 (965)
.++++ |...... +.++++ ...+|-...+ ...+..+...+...+........+--++
T Consensus 255 k~~Dd---y~~~~~s-------------v~klLe~~~~~~a~~~~-------s~~~~l~~~~ek~~~~i~~~~Rgp~LA~ 311 (932)
T KOG2053|consen 255 KGNDD---YKIYTDS-------------VFKLLELLNKEPAEAAH-------SLSKSLDECIEKAQKNIGSKSRGPYLAR 311 (932)
T ss_pred hCCcc---hHHHHHH-------------HHHHHHhcccccchhhh-------hhhhhHHHHHHHHHHhhcccccCcHHHH
Confidence 44433 1111110 001110 0000000000 0001111222222222222111111222
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhh
Q 046930 488 NDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLN 567 (965)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (965)
-.+...+..-|+.++....|-+-...- | -+..-+..+...=...+...++...+...+..... .+....+.+.-
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~kfg~k--p---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~-~k~l~~h~c~l 385 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFKKFGDK--P---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGD-EKVLQQHLCVL 385 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHHHhCCC--c---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhh-HHHHHHHHHHH
Confidence 222233345577776665553322111 0 11111111111111222233333333333322210 01111111111
Q ss_pred cHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCC----ch---hhHHHHHHHHHhcCCH---
Q 046930 568 DVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCM----DV---VDYSTIVAALCREGYV--- 637 (965)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~---~~~~~l~~~~~~~g~~--- 637 (965)
.....+-.|..+...+. ......+......| .++ -++-.|.. +. -+-+.|++.+-+.++.
T Consensus 386 ~~~rl~G~~~~l~ad~i--~a~~~kl~~~ye~g-----ls~---~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l 455 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSI--LAYVRKLKLTYEKG-----LSL---SKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDL 455 (932)
T ss_pred HHHHHhhccccCChHHH--HHHHHHHHHHHhcc-----ccc---cccccccccccHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 11111111111111000 00000000000000 000 00001111 11 2236677777777664
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHH
Q 046930 638 NKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRM 717 (965)
Q Consensus 638 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (965)
-+|+-+++...... +.|..+--.+++.|.-.|-+..|.++|+.+--..+..|..-|. +...+...|++..+...++..
T Consensus 456 ~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 456 FEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence 45677777766653 2355566677888888899999999988875555555543333 234466778888888888887
Q ss_pred HHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH---HHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 718 VLKGFKPS-TRIYNSFIDGYCKFGQLEEAFKF---LHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 718 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
.+- +..+ ..+-...+.+ .+.|.+.+..++ =+++.......-..+-+..+...+..++.++-...++.|.
T Consensus 534 lkf-y~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 534 LKF-YDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHH-HhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 763 1111 1222223333 345555544433 3344332111122334556666677888888888888875
No 103
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=1.8e-07 Score=94.79 Aligned_cols=212 Identities=13% Similarity=0.070 Sum_probs=168.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
.+-.++...++.++|+..++++++.+ |.+..+|+..+.++...| ++++++..+++++..+ |.+..+|+....++
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l 116 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHH
Confidence 33344555678999999999999999 899999999999999998 6899999999999877 77888999888777
Q ss_pred HhcCCh--hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 131 CMLGRV--NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 131 ~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.+.|+. +++..+++++++.+ +.|..+|+....++...|+++++++.++++++.++.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d---------------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~- 174 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD---------------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR- 174 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC---------------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-
Confidence 777763 67888999998864 367899999999999999999999999999998776
Q ss_pred CHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 046930 209 NLITYTAIIFGFCKK---GKL----EEAFTVFKKVEDLGLVADEFVYATLIDGVCR----RGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 277 (965)
|..+|+....++.+. |.. ++.+.....++... +.|...|+.+...+.. .+...+|.+.+.+....++.
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 788888777666554 222 46777777777775 5678888888877766 24456688888887765433
Q ss_pred CCHHHHHHHHHHHHh
Q 046930 278 PSIVTYNTIINGLCK 292 (965)
Q Consensus 278 ~~~~~~~~l~~~~~~ 292 (965)
+......|+..|..
T Consensus 254 -s~~al~~l~d~~~~ 267 (320)
T PLN02789 254 -HVFALSDLLDLLCE 267 (320)
T ss_pred -cHHHHHHHHHHHHh
Confidence 56677778887764
No 104
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.01 E-value=9.9e-05 Score=80.57 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=157.5
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
...+++..|++.....++.+|-.+-..++..+. +.+.|+.++|..+++...... +.+..++..+-.+|...|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~---~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLK---GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCC---CCchHHHHHHHHHHHHHhhhh
Confidence 467899999999999999886555555555554 789999999999998876666 568889999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
+|..+|+++.... |+-.....+..+|.+-+.+.+-.+.--++-+.- +.++..+-.+
T Consensus 95 ~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~---------------------pk~~yyfWsV 150 (932)
T KOG2053|consen 95 EAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF---------------------PKRAYYFWSV 150 (932)
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------CcccchHHHH
Confidence 9999999999864 567777778888888887775554443433321 1223333334
Q ss_pred HHHHHhc-CC---------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCCHhHHH
Q 046930 182 LDGFSKE-GT---------IEKAVGILNKMIEDR-LRPNLITYTAIIFGFCKKGKLEEAFTVF-KKVEDLGLVADEFVYA 249 (965)
Q Consensus 182 ~~~~~~~-g~---------~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~ 249 (965)
++.+.+. .. ..-|.+.++.+++.+ .--+..-...-...+...|++++|++++ ....+.-...+...-+
T Consensus 151 ~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~ 230 (932)
T KOG2053|consen 151 ISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLEN 230 (932)
T ss_pred HHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHH
Confidence 4333321 11 223555666666553 2223333333445667789999999999 4444443344555555
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046930 250 TLIDGVCRRGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 250 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 277 (965)
.-+..+...+++.+..++..++...|..
T Consensus 231 ~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 231 KKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 6678888899999999999999888654
No 105
>PF13041 PPR_2: PPR repeat family
Probab=98.99 E-value=1.3e-09 Score=76.11 Aligned_cols=49 Identities=35% Similarity=0.802 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC 221 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (965)
||+.+||.++.+|++.|++++|.++|++|.+.|++||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777776664
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=6.9e-08 Score=95.89 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 180 ILLDGFSKEGTIEKAVGILNKMIEDRLR-P-NLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 180 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
.+...+.+.|++++|...|..++...+. | ....+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666788999999999999999876432 2 3577888999999999999999998888765
No 107
>PF13041 PPR_2: PPR repeat family
Probab=98.95 E-value=2.2e-09 Score=74.97 Aligned_cols=49 Identities=39% Similarity=0.803 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 046930 654 VNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLC 702 (965)
Q Consensus 654 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 702 (965)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=2.2e-07 Score=86.14 Aligned_cols=157 Identities=16% Similarity=0.123 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
..+...+...|+-+.+..+.......+ |.+.......+....+.|++..|+..|.++.... |+|..+|+.++.+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHHHH
Confidence 444444444455555554444443333 4444444445555555555555555555555443 44455555555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 046930 131 CMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL 210 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 210 (965)
.+.|++++|..-|.++.+..+ -++...+.|.-.+.-.|+++.|..++......+.. |.
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~---------------------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~ 202 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAP---------------------NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DS 202 (257)
T ss_pred HHccChhHHHHHHHHHHHhcc---------------------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-ch
Confidence 555555555555555544311 22333444444444455555555555544443222 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 046930 211 ITYTAIIFGFCKKGKLEEAFTVFK 234 (965)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~ 234 (965)
..-..+..+....|++++|..+-.
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhcc
Confidence 344444444445555555544443
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.93 E-value=9.7e-08 Score=94.82 Aligned_cols=188 Identities=14% Similarity=0.064 Sum_probs=140.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh---
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV--- 121 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--- 121 (965)
.....+..++..+...|++++|...|+.++..++..|....++..++.++...|++++|+..|+++++.. |.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 3566788889999999999999999999999884323344688999999999999999999999999876 33333
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHH
Q 046930 122 SYTSLVIALCML--------GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIE 192 (965)
Q Consensus 122 ~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 192 (965)
++..++.++... |++++|.+.|+++.... |+ ...+..+..... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------p~~~~~~~a~~~~~~----~~ 162 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY----------------------PNSEYAPDAKKRMDY----LR 162 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC----------------------CCChhHHHHHHHHHH----HH
Confidence 577777777765 78999999999998753 33 223322221111 00
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHhHHHHHHHH
Q 046930 193 KAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL--VADEFVYATLIDGVCRRGDLDCAFRLLED 270 (965)
Q Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 270 (965)
. ... .....+...+.+.|++.+|+..++.+.+... +.....+..+..++.+.|++++|..+++.
T Consensus 163 ~------~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 163 N------RLA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred H------HHH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 000 1122566778999999999999999987742 22356888999999999999999999999
Q ss_pred HHHC
Q 046930 271 MEKK 274 (965)
Q Consensus 271 ~~~~ 274 (965)
+...
T Consensus 229 l~~~ 232 (235)
T TIGR03302 229 LGAN 232 (235)
T ss_pred HHhh
Confidence 8765
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=6.5e-08 Score=96.69 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=167.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhH
Q 046930 184 GFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDC 263 (965)
Q Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 263 (965)
-+.-.|++..++.-.+ ...............+.+++...|+++.++. ++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3555899998887666 3332222234445567788999998876543 333333 5555555555444433345555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC
Q 046930 264 AFRLLEDMEKKGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ 342 (965)
Q Consensus 264 A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (965)
+..-+++.......+ +..........+...|++++|++++... .+.......+..+++.++++.|.+.++.|.+.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-- 161 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQID-- 161 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 555555544333332 2333334445667789999999998876 677888888899999999999999999998653
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 046930 343 MDIVMCNILIKALFM----VGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYN 418 (965)
Q Consensus 343 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (965)
.| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+....++.++.++.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 34 344445554433 33689999999998765 4678888999999999999999999999999988888999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHC
Q 046930 419 CIINGLCKSGMV-DMATEVFIELNEK 443 (965)
Q Consensus 419 ~l~~~~~~~g~~-~~A~~~~~~~~~~ 443 (965)
.++.+....|+. +.+.+.+.++...
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999988888887 6677787777764
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.88 E-value=0.00016 Score=74.15 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHccCChHHHHHHHH
Q 046930 637 VNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVP-SEVSYATLIYNLCKEGQLLDAKKLFD 715 (965)
Q Consensus 637 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 715 (965)
.+...++++++...-...-..+|..+++.-.+..-+..|..+|.++.+.+..+ +..+.++++.-|+ +++..-|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55556666666654322233467778888778888888999999998876666 5677777877554 677788899998
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 716 RMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK--FTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 716 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
-=++. +..++......++-+...|+-..|..+|++.+..++.|+. .+|..++.-=..-|+.+-++++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77665 3445555567777888888888899999998887666653 5788888766778888888888777643
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=1.1e-07 Score=84.63 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 32 LVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
..|++++... |+ .+..++.++...|++++|...|+.++..+ |.+..++..++.++...|++++|+..|++++
T Consensus 14 ~~~~~al~~~---p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSVD---PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcC---HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567766533 33 35567888999999999999999999998 8899999999999999999999999999999
Q ss_pred HcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 112 SLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..+ |.++..+..++.++...|++++|+..|+++++..
T Consensus 86 ~l~--p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 86 MLD--ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred hcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 976 7788899999999999999999999999998864
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=2e-05 Score=96.14 Aligned_cols=204 Identities=15% Similarity=0.086 Sum_probs=128.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCc--c-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCC--H
Q 046930 623 DYSTIVAALCREGYVNKALDLCAFAKNK----GIT--V-NIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--DMVPS--E 691 (965)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~--~ 691 (965)
++..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 3455566777788888888877766542 111 1 1233455666677778999988888877652 11121 3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCChhhH-----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh---h
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKG-FKPSTRIY-----NSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK---F 762 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~ 762 (965)
..+..+..++...|++++|.+.+..+.... .......+ ......+...|+.+.|...+............ .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 344455667778899999988888875420 01111111 11223445578888888887776542111111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPDF-LGFLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
.+..++.++...|++++|...++++.+. +..++. .++..++.++.+.|+.++|...+.++++..
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2445677788889999999999887652 333332 336678888889999999999999998743
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=1.6e-05 Score=97.02 Aligned_cols=376 Identities=15% Similarity=0.069 Sum_probs=226.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
....+..+...|++.+|...+..+... +.-.......+......|+++.+..+++.+.... ...++.........
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~ 418 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHH
Confidence 344455566677777776655443211 1222334445556667788888777776642111 12233333445556
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD--TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (965)
+...|++++|...+..+...-...+ .+..+. ......+...+...|++++|...+++.......
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~--------------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 484 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRN--------------IELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL 484 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccC--------------cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 6778999999999988765311000 000111 122223445567899999999999998874222
Q ss_pred CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--CHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC----
Q 046930 208 PNL----ITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL---VA--DEFVYATLIDGVCRRGDLDCAFRLLEDMEKK---- 274 (965)
Q Consensus 208 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 274 (965)
.+. .+.+.+...+...|++++|...+.+.....- .+ ...++..+...+...|+++.|...+++....
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 222 3445666778889999999999988874311 11 1234555667788899999999998887652
Q ss_pred CCC--C-CHHHHHHHHHHHHhcCCcchHHHHHcCC-------CC--CHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC
Q 046930 275 GIK--P-SIVTYNTIINGLCKVGRTSDAEEVSKGI-------LG--DVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ 342 (965)
Q Consensus 275 g~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (965)
+.. + ....+..+...+...|++++|...+... .+ ....+..+...+...|+++.|...+..+......
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 211 1 1233445566777789999987775432 11 1233444566777888998888888777543111
Q ss_pred C-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHchhCCCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 046930 343 M-DIVMC-----NILIKALFMVGALEDARALYQAMPEMNLVANS---VTYSTMIDGYCKLGRIEEALEIFDELRRM---- 409 (965)
Q Consensus 343 ~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 409 (965)
. ....+ ...+..+...|+.+.|..++............ .....+..++...|++++|...++++...
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1 10101 11123344578888888887766542211111 12345667778888888888888887654
Q ss_pred CC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046930 410 SI--SSVACYNCIINGLCKSGMVDMATEVFIELNEKG 444 (965)
Q Consensus 410 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 444 (965)
+. ....+...++.++...|+.++|...+.+.++..
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11 123456677777888888888888888887653
No 115
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=2.7e-07 Score=92.35 Aligned_cols=246 Identities=15% Similarity=0.112 Sum_probs=155.5
Q ss_pred HHHhhhcHHHHHHHHHhhhhcCcc--ccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHH
Q 046930 562 QYLCLNDVTNALLFIKNMKEISST--VTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNK 639 (965)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (965)
.++-.|++..++.-.+ ....++. ...-.-+.+.++..|+...++.-+.. ..+ +...+...+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~-~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSS-PELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSS-CCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCC-hhHHHHHHHHHHHhCccchHH
Confidence 4556677777776555 2222222 22224456688888887654433322 222 235555555544444345566
Q ss_pred HHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 046930 640 ALDLCAFAKNKGITV-NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMV 718 (965)
Q Consensus 640 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (965)
++.-+++.......+ +..........+...|++++|++++... .+.......+.+|.+.+|++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666655544333222 3333333446677889999999988653 345666778888999999999999999998
Q ss_pred HCCCCCChhhHHHHHHHHHh--cC--CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 719 LKGFKPSTRIYNSFIDGYCK--FG--QLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 719 ~~~~~~~~~~~~~l~~~~~~--~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
+. ..|. +...++.++.. .| ++.+|..+|+++... +.+++.+.+.++.++...|++++|.+.+++..+ ..|
T Consensus 159 ~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~ 232 (290)
T PF04733_consen 159 QI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDP 232 (290)
T ss_dssp CC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-C
T ss_pred hc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hcc
Confidence 74 3343 33444444332 33 689999999998765 567788899999999999999999999999854 566
Q ss_pred Ch-HHHHHHHHHHhcCCCH-HHHHHHHHHHHh
Q 046930 795 DF-LGFLYLVKGLCTKGRM-EEARSILREMLQ 824 (965)
Q Consensus 795 ~~-~~~~~l~~~~~~~g~~-~eA~~~~~~~~~ 824 (965)
+. .++.+++.+....|+. +.+.+++.++.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 54 4577888888889988 556677777766
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=6.4e-07 Score=83.17 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 046930 65 RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFV 144 (965)
Q Consensus 65 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 144 (965)
.+...+-.....+ |.+..+ ......+.-.|+-+.+.....+..... +.+.......+....+.|++.+|+..++
T Consensus 51 ~a~~al~~~~~~~---p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 51 GAAAALGAAVLRN---PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred HHHHHHHHHHhcC---cchHHH-HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3444444444555 677777 778888888888888888888866543 5666677778888888999999999999
Q ss_pred HHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046930 145 RMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG 224 (965)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 224 (965)
++.... ++|..+|+.+..+|.+.|+++.|...|.+.++..+. ++...+.+...+.-.|
T Consensus 125 kA~~l~---------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~g 182 (257)
T COG5010 125 KAARLA---------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRG 182 (257)
T ss_pred HHhccC---------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcC
Confidence 887654 478889999999999999999999999998886444 6677888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046930 225 KLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEK 273 (965)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 273 (965)
+++.|..++......+ ..|..+-..+.......|+++.|..+...-..
T Consensus 183 d~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 183 DLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred CHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 9999999988888765 44666777777778888899888887665443
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=1.4e-06 Score=97.71 Aligned_cols=206 Identities=10% Similarity=0.036 Sum_probs=148.4
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+.+....+..+....-|.-++|-+.+..-++ .++.....-.....++.-........ |.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 88 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRRY---PHTELF 88 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHhc---cccHHH
Confidence 556666666666655666666666443332121 11222222233334444444444444 778899
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
+..++.+....|++++|+.+++.++... |.+..++..++.++.+.+++++|...+++++...+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--------------- 151 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--------------- 151 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC---------------
Confidence 9999999999999999999999999876 66677888999999999999999999999987642
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 046930 167 VDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF 246 (965)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (965)
.+....+.+..++.+.|++++|..+|+++...++. +..++..+..++...|+.++|...|++..+.. .+-..
T Consensus 152 ------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~ 223 (694)
T PRK15179 152 ------SSAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGAR 223 (694)
T ss_pred ------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchH
Confidence 45677778888888999999999999999985433 57888888899999999999999999988764 33445
Q ss_pred HHHHHH
Q 046930 247 VYATLI 252 (965)
Q Consensus 247 ~~~~l~ 252 (965)
.|+.++
T Consensus 224 ~~~~~~ 229 (694)
T PRK15179 224 KLTRRL 229 (694)
T ss_pred HHHHHH
Confidence 555443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=4.4e-07 Score=85.60 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=96.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH-HhcCC--h
Q 046930 60 QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL-CMLGR--V 136 (965)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~ 136 (965)
.++.++++..++..++.+ |.+...|..++..|...|++++|+..|++++... |.+...+..++.++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCc
Confidence 567788888888888888 7888888888888888888888888888888876 66777888888764 56666 4
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
++|.++++++++.++ .+..++..+...+.+.|++++|...|+++++..+
T Consensus 127 ~~A~~~l~~al~~dP---------------------~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 127 PQTREMIDKALALDA---------------------NEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHHhCC---------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888887642 4577778888888888888888888888887643
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=9.3e-08 Score=85.10 Aligned_cols=111 Identities=12% Similarity=-0.045 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.+..++..+ .+.|++++|+..|+.++... |.+..++..++.++...|++++|+..|+.++..+ |.++.++..++
T Consensus 26 ~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---p~~~~a~~~lg 99 (144)
T PRK15359 26 TVYASGYAS-WQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD---ASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHH
Confidence 456667766 89999999999999999866 5688899999999999999999999999999998 89999999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 92 SGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
.++...|++++|+..|++++... |.++..+.....+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~~~~~~~~ 136 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS--YADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Confidence 99999999999999999999976 66666666655544
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=6.1e-05 Score=85.37 Aligned_cols=154 Identities=11% Similarity=0.088 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046930 174 DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLID 253 (965)
Q Consensus 174 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 253 (965)
+..++..++.+|-+.|+.++|..+|+++++..+. |+.+.|.+...|... ++++|++++.++...
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 4457778888899999999999999999998744 888899999999888 999999998887754
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHH
Q 046930 254 GVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETK 333 (965)
Q Consensus 254 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (965)
+...+++..+..++.++....+. +...+..+.+.....-.... -..++.-+...|-..+++++++.++
T Consensus 179 -~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~~----------~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFTR----------LVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred -HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccch----------hHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 55667888888888888887333 33333333333322211222 2334445666777778888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH
Q 046930 334 QRLEEAGIQMDIVMCNILIKALF 356 (965)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~ 356 (965)
+.+++... .+.....-++..|.
T Consensus 247 K~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCC-cchhhHHHHHHHHH
Confidence 88877653 24445555555554
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=2.1e-07 Score=87.71 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=108.0
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH-HhcCC--h
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF-CKIGK--P 100 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~ 100 (965)
.++.++++..++.+++.. |.+...|..++.+|...|++++|+..|+++.+.+ |.++.++..++.++ ...|+ +
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCCc
Confidence 355577888889888866 6788899999999999999999999999999999 89999999999974 77787 5
Q ss_pred hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 101 ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++|.+.++++++.+ |.++.++..++..+...|++++|+..|+++++..
T Consensus 127 ~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999987 7788899999999999999999999999998864
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=4.7e-07 Score=95.62 Aligned_cols=213 Identities=17% Similarity=0.068 Sum_probs=115.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 046930 625 STIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKE 704 (965)
Q Consensus 625 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 704 (965)
..+...+.+.|-..+|+.+|+++. .|...+.+|+..|+..+|..+..+-++ -+||+..|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 455556666666666666665432 344555666666666666666655555 245566666666665555
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 046930 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGF 783 (965)
Q Consensus 705 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 783 (965)
.-+++|.++.+..... .-..++......+++.++.+.++...+ +.| -..+|-.++.+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 5555666555543321 112222233335566666666666555 244 344565555555666666666666
Q ss_pred HHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHH
Q 046930 784 FLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIA 862 (965)
Q Consensus 784 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 862 (965)
|..... +.|+... |+++..+|.+.|+..+|...+.++++... . ....+-+......+.|.+++|++
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~---------~--~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY---------Q--HWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC---------C--CCeeeechhhhhhhcccHHHHHH
Confidence 666643 5565554 66666666666666666666666665321 0 11122233333345566666666
Q ss_pred HHHHHhhc
Q 046930 863 ILDEIGYM 870 (965)
Q Consensus 863 ~~~~~~~~ 870 (965)
.|.++...
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 66655433
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=1.9e-06 Score=96.67 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=137.7
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHH
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIG 105 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 105 (965)
.+.+++.......+ .++.++.++..|+++..+.|.+++|+.+++.+++.. |.+..+...++.++.+.+++++|+.
T Consensus 67 ~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 67 KPAAALPELLDYVR--RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred chHhhHHHHHHHHH--hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHH
Confidence 34445555555444 346678999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH
Q 046930 106 FFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF 185 (965)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 185 (965)
.++++++.. |.+......++.++.+.|++++|..+|+++...+ +.+..++..+...+
T Consensus 142 ~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~---------------------p~~~~~~~~~a~~l 198 (694)
T PRK15179 142 EIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQH---------------------PEFENGYVGWAQSL 198 (694)
T ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC---------------------CCcHHHHHHHHHHH
Confidence 999999977 7777888999999999999999999999999743 23478899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 186 SKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217 (965)
Q Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 217 (965)
...|+.++|...|+++++.. .|....|+..+
T Consensus 199 ~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 199 TRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 99999999999999999863 33445555544
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=4.3e-06 Score=94.36 Aligned_cols=134 Identities=12% Similarity=0.114 Sum_probs=98.2
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVK------- 79 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------- 79 (965)
|.+...|..|+..| ...+++++|.+..+..++..+-.+. .|..++-.+.+.+++.++..+ .+.+.-..
T Consensus 28 p~n~~a~~~Li~~~-~~~~~~deai~i~~~~l~~~P~~i~--~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 28 LSKFKELDDLIDAY-KSENLTDEAKDICEEHLKEHKKSIS--ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCccee--hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 56677899999987 7899999999999988876643333 344444467777777666665 44333210
Q ss_pred ---------CCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 80 ---------YPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 80 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
++.+..++..++.+|-+.|+.++|...|+++++.+ |.|+.+.+.++..|... +.++|++++.+++.
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 02333788888888888888888888888888877 77788888888888888 88888888887765
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.3e-05 Score=73.78 Aligned_cols=184 Identities=19% Similarity=0.144 Sum_probs=143.5
Q ss_pred cCCHHHHHHHHHHHHhc---C-CcccHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccC
Q 046930 634 EGYVNKALDLCAFAKNK---G-ITVNIV-TYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS---EVSYATLIYNLCKEG 705 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 705 (965)
..+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++...- |. ..-+.++ .+...|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam--~lEa~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAM--LLEATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHH--HHHHhh
Confidence 35778888888877642 3 444554 45556667778899999999999987643 33 2223333 366789
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 706 QLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFL 785 (965)
Q Consensus 706 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 785 (965)
++++|+++|+.+++.+ +.|.+++-.-+.+.-..|+.-+|++.+...++. +.-|...|.-+...|...|++++|.-+++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 9999999999999874 556777777777788889988999999998885 66689999999999999999999999999
Q ss_pred HhHhCCCCCChHH-HHHHHHHHhcCC---CHHHHHHHHHHHHhc
Q 046930 786 DFNTKGVSPDFLG-FLYLVKGLCTKG---RMEEARSILREMLQS 825 (965)
Q Consensus 786 ~~~~~~~~p~~~~-~~~l~~~~~~~g---~~~eA~~~~~~~~~~ 825 (965)
+++= ++|-... +..++..++-.| +++-|.++|.++++.
T Consensus 179 E~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9964 7887666 667888887655 577899999999983
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=9.2e-07 Score=78.85 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 33 VLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
.|+.++... +.+......++..+...|++++|...|+.+...+ |.++.++..++.++...|++++|...|++++.
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666544 3355667788888899999999999999998887 78889999999999999999999999999988
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 113 LGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.+ |.+...+..++.++...|++++|...|+++++..
T Consensus 80 ~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 80 LD--PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred cC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 66 6677888888999999999999999999988753
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.9e-05 Score=71.35 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=162.8
Q ss_pred HHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHH
Q 046930 560 LVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNK 639 (965)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (965)
+..+.-.|++..++............+..-.-+.+.|+..|.......-+.... .+...+...+...+...++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhHH
Confidence 344556677777777766655443333333445567777776544332222111 1224444445555555555555
Q ss_pred HHHHH-HHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 046930 640 ALDLC-AFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMV 718 (965)
Q Consensus 640 A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (965)
-+.-+ +.+.......+......-+..|+..+++++|+........ ......+ +..+.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44443 4444443333333334445678999999999999876322 2223333 344668889999999999999
Q ss_pred HCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 719 LKGFKPSTRIYNSFIDGYCK----FGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 719 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
+- .+..+.+.|+.++.+ .+++.+|.-+|++|-++ ..|+..+.+-.+.++...|++++|..+++.+++.. ..
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 73 255677777777655 35799999999999875 68899999999999999999999999999997643 33
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHH-HHHHHHh
Q 046930 795 DFLGFLYLVKGLCTKGRMEEARS-ILREMLQ 824 (965)
Q Consensus 795 ~~~~~~~l~~~~~~~g~~~eA~~-~~~~~~~ 824 (965)
+..++.+++..-...|...++.. .+.+...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 56678888888888888877765 4444444
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=2.8e-06 Score=89.98 Aligned_cols=211 Identities=13% Similarity=0.083 Sum_probs=158.6
Q ss_pred HHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHH
Q 046930 594 KKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFV 673 (965)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 673 (965)
..+...|-...|..+++. ...|...+..|...|+.++|..+..+.+++ +|+...|..+++......-++
T Consensus 406 ell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 344455555555555543 667888888999999999999888888774 678888888888888877888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 046930 674 EAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLK 753 (965)
Q Consensus 674 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 753 (965)
+|.++.+..... .-..+.....+.++++++.+.++.-.+.. +.-..+|..++.+..++++++.|...|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 888888765432 22222222345789999999999887752 4467788999999999999999999999988
Q ss_pred hCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 754 INCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 754 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
. ..|| ...||++..+|.+.|+-.+|...+.++++.+..|-. .+-+-.-...+.|.+++|.+.+.+++..+
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 7 4886 468999999999999999999999998776544332 24444455678899999999999888743
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=4.7e-06 Score=84.52 Aligned_cols=152 Identities=15% Similarity=0.150 Sum_probs=130.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
-........+..+...|++++|+..++..+... |.|+..+...+..+.+.++..+|.+.|++++... |.....+.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~---P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~ 378 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ---PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQL 378 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHH
Confidence 344566677777889999999999999998887 8999999999999999999999999999999976 55577888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.++.+|.+.|++.+|+..++...... +.|+..|..|..+|...|+..++.....++..
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~---------------------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~- 436 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFND---------------------PEDPNGWDLLAQAYAELGNRAEALLARAEGYA- 436 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcC---------------------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-
Confidence 99999999999999999999988753 46799999999999999999999998888743
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
..|+++.|...+....+..
T Consensus 437 -----------------~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 437 -----------------LAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -----------------hCCCHHHHHHHHHHHHHhc
Confidence 3578888888887777653
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.57 E-value=2.2e-06 Score=76.38 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=93.8
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 68 EVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
..|+.++..+ |.+......++..+...|++++|.+.|+++...+ |.+...+..++.++...|++++|...++++.
T Consensus 4 ~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLD---SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCC---hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777 6777888899999999999999999999998876 6678888899999999999999999999887
Q ss_pred HCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 148 SEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
+.+ +.+...+..+...+...|++++|...|+...+..
T Consensus 79 ~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 79 ALD---------------------PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred hcC---------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 753 2467777888888899999999999999888863
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=7.7e-06 Score=83.03 Aligned_cols=181 Identities=14% Similarity=0.053 Sum_probs=141.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
+...+...+........-..+-..+....+ |....+++..+..+...|++++|+..++.++... |.|+..+..
T Consensus 273 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~ 345 (484)
T COG4783 273 DFQLARARIRAKYEALPNQQAADLLAKRSK-----RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLEL 345 (484)
T ss_pred cHHHHHHHHHHHhccccccchHHHHHHHhC-----ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHH
Confidence 444455555544444333444444433322 3455789999999999999999999999999865 788888889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.+.++.+.++.++|.+.+++++... |+ ...+..+..++.+.|++.+|+.+++.....
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~----------------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALD----------------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC----------------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 9999999999999999999999863 44 667778899999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+. |+..|..|.++|...|+..++.....+... ..|++++|...+....+.
T Consensus 404 ~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 404 DPE-DPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHh
Confidence 655 899999999999999999999887766543 346777777766666554
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.9e-05 Score=71.33 Aligned_cols=247 Identities=10% Similarity=0.048 Sum_probs=164.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHH
Q 046930 185 FSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 264 (965)
+.-.|++..++..-...... +.+...-.-+.++|...|.+.....-...-. .|.......+......-++.+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhHHH
Confidence 44467887776655444332 1244444456677888887665443332211 23333333333333334444443
Q ss_pred H-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC
Q 046930 265 F-RLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQM 343 (965)
Q Consensus 265 ~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (965)
. ++.+.+.......+......-+..|++.|++++|.+.... ..+......-+..+.+..+++-|.+.+++|.+..
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--- 167 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQILLKMHRFDLAEKELKKMQQID--- 167 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence 3 4455555544443444455556678899999999999887 5566666666677788888999999999888753
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 046930 344 DIVMCNILIKALFM----VGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNC 419 (965)
Q Consensus 344 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (965)
+..+.+.|..++.+ .+.+.+|.-+|++|-+. .+|+..+.+..+.++...|++++|..+++.++...+.++.+...
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 56777777777765 35688889999998774 36888888888889999999999999999999998888888888
Q ss_pred HHHHHHhcCChHHHH-HHHHHHHH
Q 046930 420 IINGLCKSGMVDMAT-EVFIELNE 442 (965)
Q Consensus 420 l~~~~~~~g~~~~A~-~~~~~~~~ 442 (965)
++.+-...|...++. +.+.++..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 887777777765544 34444443
No 133
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.55 E-value=4.8e-05 Score=86.58 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhhHHHH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS---EVSYATL 697 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l 697 (965)
...|..|...|.+.+..++|.++|+.|.++ .......|...+..+.++++-+.|..++.++++.- |. .......
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--chhhhHHHHHHH
Confidence 344555666666666666666666666655 33355566666666666666666666666666532 22 2222333
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 046930 698 IYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP 759 (965)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 759 (965)
+..-.+.|+.+.+..+|+..+.. .+-....|+..++.-.++|+.+.+..+|+++...++.|
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 34445666666666666666654 23455566666666666666666666666666665555
No 134
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=4.8e-05 Score=86.60 Aligned_cols=247 Identities=15% Similarity=0.096 Sum_probs=178.6
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCC-CCchHHHHHHHHHHHhcCChhhH
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDE-NVKY-PFDNFVCSSVVSGFCKIGKPELA 103 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A 103 (965)
.++.|.. |.+.++.+ |.++..|........+.++.++|.+++++++.. +++. ..-...|.++.+....-|.-+.-
T Consensus 1440 ~pesaeD-ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAED-FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CCcCHHH-HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 4555655 44445544 566777888888888889999999999988764 2210 12234677777777777878888
Q ss_pred HHHHHHHHHcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH
Q 046930 104 IGFFENAISLGALKPNV-VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL 182 (965)
Q Consensus 104 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 182 (965)
.+.|+++.+.. ++ ..|..|...|.+.+++++|.++++.|.+. . .-...+|..++
T Consensus 1517 ~kVFeRAcqyc----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-------------------F--~q~~~vW~~y~ 1571 (1710)
T KOG1070|consen 1517 KKVFERACQYC----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-------------------F--GQTRKVWIMYA 1571 (1710)
T ss_pred HHHHHHHHHhc----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-------------------h--cchhhHHHHHH
Confidence 88999988732 43 36778888899999999999999998874 1 24577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 046930 183 DGFSKEGTIEKAVGILNKMIEDRLRPN-LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL 261 (965)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 261 (965)
..+.++++-+.|..++.++++.-++.. .......+..-.+.|+.+++..+|+...... |--...|+..++.-.+.|+.
T Consensus 1572 ~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCH
Confidence 888888888899999988887643322 2233444566678899999999999888765 55677899889888899999
Q ss_pred hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcchHHH
Q 046930 262 DCAFRLLEDMEKKGIKPSI--VTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 262 ~~A~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~~~a~~ 301 (965)
+.++.+|+++...++.|-. ..|...+..-...|+-+.++.
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 9999999999888776653 355555554455566554443
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=6.6e-05 Score=69.29 Aligned_cols=189 Identities=16% Similarity=0.140 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHHHHhC--C-CCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCCh
Q 046930 25 NDPEKALLVLKDCLRNH--G-TLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKP 100 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~--~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 100 (965)
.++++.++++..++... | .-++ -..+..+.-+..-.|+.+.|..++....+.- |.+..+...-+-.+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhch
Confidence 44555666555544322 1 1122 1234445555566667777777777666655 55666665566666667777
Q ss_pred hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHH
Q 046930 101 ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTI 180 (965)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 180 (965)
++|+++|+..++.+ |.|...+-.-+.+.-..|+.-+|++-+...++. ...|..+|..
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---------------------F~~D~EAW~e 159 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---------------------FMNDQEAWHE 159 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---------------------hcCcHHHHHH
Confidence 77777777777655 455555555555566666666666666555543 2356677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcC
Q 046930 181 LLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG---KLEEAFTVFKKVEDLG 240 (965)
Q Consensus 181 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 240 (965)
+...|...|++++|.-++++++-..|. ++..+..+...+.-.| +...+.+.|.+..+..
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 777777777777777777776654322 3444444444444333 3445666666666553
No 136
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.00012 Score=72.60 Aligned_cols=288 Identities=11% Similarity=-0.066 Sum_probs=150.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHHcCCh
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG-MHKIILQATFAKGGV 465 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~ 465 (965)
...+.+..++..|+..+..+++..|.+..-|..-+..+...|++++|.--.++-++. .|... ...-.-+.+...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 334556666777777777777777777777777777777777777776666555432 22211 111111111111111
Q ss_pred hhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccch-hcHHHH-HHHHHhcCcchhhhhhhH
Q 046930 466 GGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTD-QSYYSI-LKGLDNEGKKWLIGPLLS 543 (965)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~~~~~~ 543 (965)
.+|...++.- ..+....|+..++........++. ..+..+ ..++...++...+...-.
T Consensus 134 i~A~~~~~~~--------------------~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLKSK--------------------QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhhhh--------------------hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 1111111100 000112222223332222222211 222222 123444666777777777
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhh
Q 046930 544 MFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVD 623 (965)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 623 (965)
..++.+.....++.--..++....+.+.|+..|.+....++...-.... .. .+.-...
T Consensus 194 ~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~----------------~~------~~k~le~ 251 (486)
T KOG0550|consen 194 DILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA----------------SM------MPKKLEV 251 (486)
T ss_pred HHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH----------------hh------hHHHHHH
Confidence 7777777777777777777888888899999988877665522110000 00 0011222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC---CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHH
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNKG---ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIY 699 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 699 (965)
|..-+.-..+.|++..|.+.|.+.+... ..|+...|-....+..+.|+.++|+.--+.+.+.+ +. ...+..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHH
Confidence 3333445566777777777777776642 23333445555556666777777777777666532 22 223333345
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 046930 700 NLCKEGQLLDAKKLFDRMVLK 720 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~ 720 (965)
++...+++++|.+.|+++.+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555666777777777776664
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.46 E-value=3.3e-06 Score=73.12 Aligned_cols=98 Identities=7% Similarity=-0.100 Sum_probs=90.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
-.....++..+...|++++|.++|+.....+ |.+..-|..++-++...|++.+|+..|.++...+ +.++..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~a 109 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHH
Confidence 3456677777889999999999999999999 8999999999999999999999999999999987 7888899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 046930 127 VIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+.++...|+.+.|.+.|+.++..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=3.7e-06 Score=75.40 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=105.0
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTL-PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
.+..|..++..+ ..+++..+...+..++...+.. ........++..+...|++++|...|++++...+..+....+.
T Consensus 11 a~~~y~~~~~~~--~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 11 ASALYEQALQAL--QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345777788775 6899999998899988765332 1234566688999999999999999999999764222335678
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRM 146 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 146 (965)
..++.++...|++++|+..++.... .+..+..+...+.++.+.|++++|+..|++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8899999999999999999977432 2345567778999999999999999999875
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=2.4e-06 Score=81.01 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=78.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
+..+ .+.++|.+|+..|..++... |.++..|..-+.+|.+.|.++.|++-.+.++..+ |....+|..|+.+|..
T Consensus 88 GN~~-m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 88 GNKL-MKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHH-HHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHc
Confidence 4444 57788888888888888755 5577778888888888888888888888888888 7788888888888888
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
.|++++|++.|.++++.+ |+..+|
T Consensus 162 ~gk~~~A~~aykKaLeld---P~Ne~~ 185 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELD---PDNESY 185 (304)
T ss_pred cCcHHHHHHHHHhhhccC---CCcHHH
Confidence 888888888888888854 444444
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00013 Score=72.25 Aligned_cols=176 Identities=11% Similarity=-0.068 Sum_probs=131.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChh
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVG 466 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 466 (965)
..++...|++++|...--.+++.++.+..+...-..++.-.++.+.|+..|++.+.. .|+..........+-
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k------ 247 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPK------ 247 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHH------
Confidence 455667888888888888888888778777777777777788888999999888865 455443333222211
Q ss_pred hHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC---ccchhcHHHHHHHHHhcCcchhhhhhhH
Q 046930 467 GVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGS---VVTDQSYYSILKGLDNEGKKWLIGPLLS 543 (965)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 543 (965)
.+ ..|..-+.-.++.|++..|.+.|.+.+..++ .+....|........+.|+..++..-++
T Consensus 248 ----~l------------e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 248 ----KL------------EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred ----HH------------HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 11 1233334446889999999999999876553 4444556666667778899999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccc
Q 046930 544 MFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTV 586 (965)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 586 (965)
+.++..+....++.+-+.++.-++.+++|++.|++..+...+.
T Consensus 312 ~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 312 EALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9998888888899999999999999999999999988776653
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.35 E-value=1.3e-05 Score=69.49 Aligned_cols=99 Identities=7% Similarity=-0.111 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
-...+.+.-.+ .+.|++++|.++|+-+...+ +.+...|..|+.++-..|++++|+..|..+...+ |.++..+..
T Consensus 35 l~~lY~~A~~l-y~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~---~ddp~~~~~ 108 (157)
T PRK15363 35 LNTLYRYAMQL-MEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK---IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHH
Confidence 34555666665 68999999999999988766 5678889999999999999999999999999999 899999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+.++...|+.+.|++.|+.++...
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=1.8e-05 Score=70.95 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC--HhhHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN--VVSYTSLV 127 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~ 127 (965)
|..++..+ ..++...+...++.+...++..+....+...++..+...|++++|...|++++... ..++ ..+...+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHH
Confidence 34444433 57899999999999999885444456778889999999999999999999999865 2222 23566788
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 201 (965)
.++...|++++|+..++..... ...+..+...+.++.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~----------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE----------------------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc----------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999999999999764321 234567778889999999999999999875
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.30 E-value=0.00025 Score=69.37 Aligned_cols=188 Identities=12% Similarity=0.042 Sum_probs=114.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh-hHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV-SYT 124 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 124 (965)
++......+..+...|++++|++.|+.+....+..+....+...++.++.+.+++++|+..|++.++..+-.|+.. ++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4455556677788899999999999999998854444445568899999999999999999999999864444443 444
Q ss_pred HHHHHHHhcC---------------C---hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHH
Q 046930 125 SLVIALCMLG---------------R---VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFS 186 (965)
Q Consensus 125 ~l~~~~~~~~---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 186 (965)
.++.++...+ + ..+|+..|+++++.- |+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----------------------P~------------ 156 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----------------------PN------------ 156 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----------------------cC------------
Confidence 4444322221 1 124445555555432 22
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHhHH
Q 046930 187 KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL--VADEFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 264 (965)
..-..+|..-+..+... -...--.+...|.+.|.+..|..-++.+++.-. +........++.+|...|..++|
T Consensus 157 -S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 157 -SQYTTDATKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred -ChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 12223333333222211 000111345567777778777777777776521 22234555666777777777777
Q ss_pred HHHHHHHH
Q 046930 265 FRLLEDME 272 (965)
Q Consensus 265 ~~~~~~~~ 272 (965)
..+...+.
T Consensus 232 ~~~~~~l~ 239 (243)
T PRK10866 232 DKVAKIIA 239 (243)
T ss_pred HHHHHHHh
Confidence 77665443
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=1.2e-06 Score=69.80 Aligned_cols=82 Identities=24% Similarity=0.280 Sum_probs=36.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELA 103 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 103 (965)
+|+++.|+..|++++...+..++...+..++.+|.+.|++++|+.+++. .+.+ +.+......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---PSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---HCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---CCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445555555555444432111233333345555555555555555544 2222 23334444445555555555555
Q ss_pred HHHHHH
Q 046930 104 IGFFEN 109 (965)
Q Consensus 104 ~~~~~~ 109 (965)
++.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555443
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0081 Score=62.29 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCChHHHHH
Q 046930 637 VNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ---GCFVEAFRLFDSLERI-DMVPSEVSYATLIYNLCKEGQLLDAKK 712 (965)
Q Consensus 637 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 712 (965)
-+++.++++..+..-..-+..+|..+...-... +..+...+.++++... ...|+ .+|..++..-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 466777777766542232334444443322212 2366677777777663 33344 568888888888888999999
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 046930 713 LFDRMVLKGFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKF-TVSAVINGFCQKGDMEGALGFFLDFNTK 790 (965)
Q Consensus 713 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (965)
+|.++.+.+..+ .+.+..+++.-|| .++..-|.++|+--++. -+|.. -....+.-+...++-+.|..+|++.+..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999986666 6777788887655 56788999999886664 45543 3455677777889999999999999887
Q ss_pred CCCCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 791 GVSPDFLG--FLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 791 ~~~p~~~~--~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
++.|+... |..++.-=..-|++.-++++-++.....+
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 77777654 88888777789999999988877766544
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.27 E-value=2.2e-05 Score=68.10 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTL-PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.++.++..+ ...|++++|+..|..++...+.. .....+..++.++.+.|++++|...|+.++...+..+....++..+
T Consensus 4 ~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLV-LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445566665 66777777777777776654321 1234566677777777777777777777777654333345667777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.++...|++++|...|++++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777777777777777777777654
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=1.4e-05 Score=76.02 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
...-+.-+.+.++|++|+..|..+++.+ |.++..|...+.+|.+.|.++.|++-.+.++..+ |....+|..|+.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A 158 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHH
Confidence 3445566778899999999999999999 8999999999999999999999999999999977 6677899999999
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 046930 130 LCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~ 149 (965)
|...|++++|++.|++.++.
T Consensus 159 ~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc
Confidence 99999999999999999985
No 148
>PF12854 PPR_1: PPR repeat
Probab=98.26 E-value=1.5e-06 Score=54.03 Aligned_cols=31 Identities=42% Similarity=1.001 Sum_probs=13.4
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 722 FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDL 752 (965)
Q Consensus 722 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 752 (965)
+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
No 149
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.24 E-value=3.1e-05 Score=76.23 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=71.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-Chh
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVL----KGFK-PSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN----CLEP-DKF 762 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 762 (965)
.|..|...|.-.|+++.|+...+.=+. -|-. .....+.++++++.-.|+++.|.+.|+..... |-+. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555556666666665544222 1211 12345566666666677777777666654322 2111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHh----CC-CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNT----KG-VSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+..+|+.+|.-..++++|+.++.+=+. .+ ..-....+..|+.++...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666666666667777766665322 11 111233466677777777777777666665554
No 150
>PF12854 PPR_1: PPR repeat
Probab=98.24 E-value=1.9e-06 Score=53.58 Aligned_cols=32 Identities=38% Similarity=0.892 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 170 GIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201 (965)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 201 (965)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666677777777777777777777776665
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=3.2e-05 Score=67.10 Aligned_cols=103 Identities=11% Similarity=0.060 Sum_probs=86.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-CCHhhHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALK-PNVVSYTSL 126 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l 126 (965)
.++..++..+.+.|++++|.+.|..++..++..+....++..++.++.+.|+++.|+..|++++...+-. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4567788889999999999999999998874334446788999999999999999999999999865211 125678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC
Q 046930 127 VIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+.++.+.|++++|...++++++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999999864
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.21 E-value=4.4e-05 Score=70.95 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=70.8
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.....+..++..+...|++++|...|+++++..+..+....++..++.++.+.|++++|+..|+++++.. |.+...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHH
Confidence 3455678888888899999999999999987653223345788999999999999999999999999865 55677777
Q ss_pred HHHHHHHhcCC
Q 046930 125 SLVIALCMLGR 135 (965)
Q Consensus 125 ~l~~~~~~~~~ 135 (965)
.++.++...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 88888877776
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.20 E-value=0.00038 Score=60.89 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=43.9
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
|+..--..|+.++.+.|++.+|...|++....-. ..++..+..++++....+++..|...++++.+.++-..++....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f--A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIF--AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc--CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3333333444444444444444444444443322 33444444444444444444444444444444322122223333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 046930 125 SLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.+++.+...|++..|+..|+.++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 344444444444444444444443
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.18 E-value=3.3e-05 Score=80.76 Aligned_cols=103 Identities=12% Similarity=0.009 Sum_probs=83.0
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
.+..+ ...|+++.|+..|++++... +.+...+..++.+|...|++++|+..++.++..+ |.+..++..++.+|.
T Consensus 8 ~a~~a-~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 8 KAKEA-FVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD---PSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHH
Confidence 34444 57789999999999988866 4567788888888999999999999999999888 788888999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
..|++++|+..|++++..+ |.+......+
T Consensus 82 ~lg~~~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HhCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 9999999999999998866 4444444433
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.17 E-value=3.3e-05 Score=71.56 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHH
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGF 106 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 106 (965)
+..+...+...++..+.......+..++..+...|++++|+..|..++...+.++..+.++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555554444443344667788888899999999999999999887532233456899999999999999999999
Q ss_pred HHHHHHcCCCCCCHhhHHHHHHHHH-------hcCChhHHHHHHHHHH
Q 046930 107 FENAISLGALKPNVVSYTSLVIALC-------MLGRVNEVNELFVRME 147 (965)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~~~~ 147 (965)
|++++... +.....+..++.++. ..|++++|...+++..
T Consensus 95 ~~~Al~~~--~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 95 YFQALERN--PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHhC--cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 99999865 555666777777777 7888886666555443
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.16 E-value=0.00083 Score=65.75 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS-FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.++..+..+ ...|++++|+..|+.++...+..+-. .....++.++.+.+++++|+..|+++++..|.+|..+.++..+
T Consensus 34 ~~Y~~A~~~-~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 34 EIYATAQQK-LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 455556655 68999999999999988866433221 2236788999999999999999999999998888888899998
Q ss_pred HHHHHhcC---------------C---hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCc
Q 046930 91 VSGFCKIG---------------K---PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLK 152 (965)
Q Consensus 91 ~~~~~~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (965)
+.++...+ + ..+|++.|++.++.- |.+.. ..+|......+...
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y--------------a~~A~~rl~~l~~~--- 173 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY--------------TTDATKRLVFLKDR--- 173 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh--------------HHHHHHHHHHHHHH---
Confidence 87754433 1 235778888888754 33322 22222222222110
Q ss_pred cchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHH
Q 046930 153 FDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR--LRPNLITYTAIIFGFCKKGKLEEAF 230 (965)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 230 (965)
=..--..+..-|.+.|.+..|..-|+.+++.= .+....+...++.+|...|..++|.
T Consensus 174 ---------------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 174 ---------------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred ---------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 00111135556788888888888888888752 2224455667778888888888888
Q ss_pred HHHHHHH
Q 046930 231 TVFKKVE 237 (965)
Q Consensus 231 ~~~~~~~ 237 (965)
.+...+.
T Consensus 233 ~~~~~l~ 239 (243)
T PRK10866 233 KVAKIIA 239 (243)
T ss_pred HHHHHHh
Confidence 7766554
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=4.1e-06 Score=66.72 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=66.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 046930 60 QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEV 139 (965)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 139 (965)
.|+++.|+..|+++++..+.. ++...+..++.+|.+.|++++|+.++++ ...+ +.+......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-PNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-HHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHH
Confidence 589999999999999998421 1566788899999999999999999998 4433 34456666779999999999999
Q ss_pred HHHHHHH
Q 046930 140 NELFVRM 146 (965)
Q Consensus 140 ~~~~~~~ 146 (965)
+++++++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999864
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.13 E-value=4.4e-05 Score=79.89 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
...+..+...|++++|+..|.++++.+ |.+..++..++.+|...|++++|+..+++++..+ |.+...|..++.+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~ 80 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHH
Confidence 345667888999999999999999999 8899999999999999999999999999999987 67788999999999
Q ss_pred HhcCChhHHHHHHHHHHHCC
Q 046930 131 CMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~~ 150 (965)
...|++++|+..|+++++.+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999864
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.12 E-value=3.1e-05 Score=64.20 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+..++..+...|++++|+..++.+.+.. |.+..++..++.++...|++++|.+.|+++.... +.+...+..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHH
Confidence 3445555666666666666666666665 4455666666666666666777777666666644 3444556666666
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 046930 130 LCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~ 148 (965)
+...|++++|...+.+..+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 78 YYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHhHHHHHHHHHHHHc
Confidence 6666666666666666654
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00011 Score=76.22 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=111.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
+.+....++..+...++++.|+.+|+++.+.+ | ++...+++++...++-.+|++++.+++... |.+...+..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~ 239 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD---P---EVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNL 239 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC---C---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 45667778888888899999999999999887 3 456678999999999999999999999865 677778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
.+..+.+.++++.|+++.+++.... +.+..+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~ls---------------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELS---------------------PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC---------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888999999999999999999863 24577999999999999999999999998764
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.08 E-value=8.2e-05 Score=69.14 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=75.4
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
|.....++.++..+ ...|++++|+..|+++++..+.++. ...+..++.++.+.|++++|+..+++++... |.+..
T Consensus 32 ~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 107 (172)
T PRK02603 32 AKEAFVYYRDGMSA-QADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPS 107 (172)
T ss_pred hhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHH
Confidence 34555777888776 7889999999999999976543332 4678899999999999999999999999988 77888
Q ss_pred HHHHHHHHHHhcCCh
Q 046930 86 VCSSVVSGFCKIGKP 100 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~ 100 (965)
.+..++.++...|+.
T Consensus 108 ~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 108 ALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHcCCh
Confidence 999999999998874
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.07 E-value=1.7e-05 Score=59.37 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=51.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.++..+.+.|++++|+..|+.+++.+ |.+..++..++.++...|++++|+..|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35677888999999999999999888 7899999999999999999999999999998865
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=9.7e-05 Score=76.57 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.+-..|+..+ ...++++.|+.+|++..+.. | .+...+++++...++-.+|++++.+.++.+ |.+...+..-
T Consensus 170 yLv~~Ll~~l-~~t~~~~~ai~lle~L~~~~---p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Q 240 (395)
T PF09295_consen 170 YLVDTLLKYL-SLTQRYDEAIELLEKLRERD---P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQ 240 (395)
T ss_pred HHHHHHHHHH-hhcccHHHHHHHHHHHHhcC---C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 3444555544 77899999999999966543 3 356678889999999999999999999887 7889999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
+..+...++++.|+.+.+++.... |.+..+|..++.+|.+.|+++.|+..+..+.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999976 6677799999999999999999999887765
No 164
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.06 E-value=0.00012 Score=72.09 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=45.6
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hc----CCCCHHHHHHHHHH
Q 046930 354 ALFMVGALEDARALYQAMPEMNLVAN----SVTYSTMIDGYCKLGRIEEALEIFDELR--RM----SISSVACYNCIING 423 (965)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~----~~~~~~~~~~l~~~ 423 (965)
-+++.|+......+|+..++-|. .| +.+|..|..+|.-.+++++|+++...=+ .. ......+-..++..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 46777777777777777777652 22 2356666677777777777776543211 10 11122333344445
Q ss_pred HHhcCChHHHHHHH
Q 046930 424 LCKSGMVDMATEVF 437 (965)
Q Consensus 424 ~~~~g~~~~A~~~~ 437 (965)
+.-.|.+++|+..-
T Consensus 105 lKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 105 LKVKGAFDEALTCC 118 (639)
T ss_pred hhhhcccchHHHHH
Confidence 55555555555443
No 165
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.06 E-value=0.00093 Score=63.79 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+..+...+..+...|++.+|+..|+.+....+..|....+...++.++.+.|++++|+..|++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34455566667778888888888888887776666777777888888888888888888888877765
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.03 E-value=0.0011 Score=58.12 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=109.6
Q ss_pred CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---ChhH
Q 046930 687 MVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP---DKFT 763 (965)
Q Consensus 687 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~ 763 (965)
..|+...-..|..+..+.|++.+|...|++...--+.-|....-.++.+....++..+|...++++.+. .| .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCc
Confidence 347777777888899999999999999999987555668888889999999999999999999998875 34 3455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 764 VSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
...+..+|...|.+++|...|+.+++ ..|+...-...+..+.++|+.+||..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66778889999999999999999866 788887766677888899998888776655544
No 167
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.98 E-value=2.7e-05 Score=59.24 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=45.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcC
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFFENAISLG 114 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 114 (965)
++.++..++..+...|++++|+..|.++++.+ |.++.++..++.++...| ++++|++.|+++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34566666777777777777777777777776 666777777777777777 5777777777776643
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.98 E-value=0.00028 Score=59.36 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---CHhhHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP---NVVSYTSLV 127 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~ 127 (965)
..++.++-..|+.++|+..|++++..+...+....++..++..+...|++++|+.+|++..... |. +......+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 3445556666777777777777766653223335566667777777777777777777766542 22 222333344
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~ 147 (965)
-++...|+.++|++.+-..+
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 45666677777776665544
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.97 E-value=0.0025 Score=64.67 Aligned_cols=136 Identities=10% Similarity=0.110 Sum_probs=76.4
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-----Chh
Q 046930 660 NTVIHSLCRQ-GCFVEAFRLFDSLERI----DMVPS--EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKP-----STR 727 (965)
Q Consensus 660 ~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~ 727 (965)
..++..|... |++++|++.|+++... + .+. ..++..++..+.+.|++++|+++|+++....... +..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 3345556666 7777777777776552 2 111 3445666777888888888888888887642211 111
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC--hhHHHHHHHHHHh--cCCHHHHHHHHHHhHhCCCCCChHH
Q 046930 728 -IYNSFIDGYCKFGQLEEAFKFLHDLKIN--CLEPD--KFTVSAVINGFCQ--KGDMEGALGFFLDFNTKGVSPDFLG 798 (965)
Q Consensus 728 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (965)
.+...+-++...||+-.|...+++.... ++... ......|+.++.. ...+++++.-|+.+ ..+.|...+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~--~~ld~w~~~ 272 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI--SRLDNWKTK 272 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS--S---HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc--CccHHHHHH
Confidence 2233344566678888888888887753 12222 2355667777732 34566777777766 334444333
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00033 Score=67.59 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhc---CCHHH
Q 046930 117 KPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKE---GTIEK 193 (965)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 193 (965)
|.|...|..++.+|...|+++.|...|.++.+.. .+++..+..+..++..+ ..-.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---------------------g~n~~~~~g~aeaL~~~a~~~~ta~ 211 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA---------------------GDNPEILLGLAEALYYQAGQQMTAK 211 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhcCCcccHH
Confidence 4445555555555555555555555555555432 13344444444333221 12344
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 194 AVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 194 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+.++|+++++.++. |+.+...|...+...|++.+|...|+.|.+.
T Consensus 212 a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 212 ARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555554332 4444445555555555555555555555554
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00028 Score=68.04 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC---ChhhHH
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG---KPELAI 104 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 104 (965)
+..+.-++.-+..+ |.|...|..|+.+|...|++..|...|..+.+.. |++++.+..++.++..+. ...++.
T Consensus 139 ~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 139 EALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 34444556656655 6788999999999999999999999999999998 899999999999887754 456899
Q ss_pred HHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 105 GFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.+|++++..+ +.|+.+...++..+...|++.+|...++.|++..
T Consensus 214 ~ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 214 ALLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999988 7888889999999999999999999999999864
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.018 Score=61.50 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=136.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046930 117 KPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVG 196 (965)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 196 (965)
.|.+..|..+.......-.++.|+..|-+.....- . .++ .+.+.-.+...-..=+.+| -|++++|++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G---i----k~v----krl~~i~s~~~q~aei~~~--~g~feeaek 755 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG---I----KLV----KRLRTIHSKEQQRAEISAF--YGEFEEAEK 755 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccc---h----hHH----HHhhhhhhHHHHhHhHhhh--hcchhHhhh
Confidence 57888888888777666677777777765543200 0 000 0000000011111112222 589999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046930 197 ILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG-LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 275 (965)
+|-+|-++ | ..+..+.+.|+|-...++++.--... -..-...++.+...++....|++|.++|.....
T Consensus 756 ~yld~drr----D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 756 LYLDADRR----D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhhccchh----h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 99888654 2 34556777788888777765421100 011235788888889988999999999876542
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046930 276 IKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKAL 355 (965)
Q Consensus 276 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (965)
....+.++.+...+++-+.+...+|.+......+..++.+.|--++|.+.+-+.. .|. ..+..|
T Consensus 825 -------~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tC 888 (1189)
T KOG2041|consen 825 -------TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTC 888 (1189)
T ss_pred -------hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHH
Confidence 1235677888888888888888888888888888888888888888887765432 111 234456
Q ss_pred HhcCCHHHHHHHHHHc
Q 046930 356 FMVGALEDARALYQAM 371 (965)
Q Consensus 356 ~~~g~~~~A~~~~~~~ 371 (965)
...+++.+|.++-+..
T Consensus 889 v~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777888888776654
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=8.7e-05 Score=61.45 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.|..++..+ ...|++++|+..++.+++.. +.+..++..++.++...+++++|.+.|+...... |.+..++..++
T Consensus 2 ~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLY-YKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHH-HHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHH
Confidence 466777777 67899999999999988755 4455778889999999999999999999999987 66778999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 046930 92 SGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.++...|++++|...+.++....
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccC
Confidence 99999999999999999988643
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.93 E-value=0.00064 Score=64.91 Aligned_cols=165 Identities=14% Similarity=0.095 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
...++..+..+ .+.|++.+|+..|+.+....+..+ .+.+...++.++.+.|+++.|+..|+.+++..|.+|..+.++.
T Consensus 5 ~~~lY~~a~~~-~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEA-LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHH-HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 34556666665 799999999999999888765433 3456778899999999999999999999999987788888888
Q ss_pred HHHHHHHhcC-----------ChhhHHHHHHHHHHcCCCCCCHhhH-----------------HHHHHHHHhcCChhHHH
Q 046930 89 SVVSGFCKIG-----------KPELAIGFFENAISLGALKPNVVSY-----------------TSLVIALCMLGRVNEVN 140 (965)
Q Consensus 89 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~ 140 (965)
.++.++.... ...+|+..|+..+..- |.+..+- ..++..|.+.|.+..|.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888766543 3458999999999865 3332221 13456678899999999
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAV 195 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 195 (965)
.-++.+++.-+.. .....+...++.+|.+.|..+.+.
T Consensus 162 ~r~~~v~~~yp~t------------------~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPDT------------------PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTTS------------------HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCCC------------------chHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999863211 112345677888888888877544
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.91 E-value=3.7e-05 Score=58.51 Aligned_cols=65 Identities=28% Similarity=0.289 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHC
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLG-RVNEVNELFVRMESE 149 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 149 (965)
++.+|..++..+...|++++|+..|+++++.+ |.++..|..++.++...| ++++|+..++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999987 677889999999999999 799999999999875
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.90 E-value=0.00024 Score=65.81 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
....|+.++..+ ...|++++|+..|+.++...+.++ ...++..++.++...|++++|+..++.++... |.....+
T Consensus 34 ~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~ 109 (168)
T CHL00033 34 EAFTYYRDGMSA-QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHH
Confidence 344667777765 789999999999999987654322 24578999999999999999999999999987 6777888
Q ss_pred HHHHHHHH-------hcCChhhHHHHHHHH
Q 046930 88 SSVVSGFC-------KIGKPELAIGFFENA 110 (965)
Q Consensus 88 ~~l~~~~~-------~~g~~~~A~~~~~~~ 110 (965)
..++.++. ..|+++.|+..|+++
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 88888888 778877555555443
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.88 E-value=0.00053 Score=69.58 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHHH----CCCCCC--hhhHHHHHHHHHhc-CCHHHHHHHHHHhhhC----CCCCC--hhHHHHHHHHHH
Q 046930 706 QLLDAKKLFDRMVL----KGFKPS--TRIYNSFIDGYCKF-GQLEEAFKFLHDLKIN----CLEPD--KFTVSAVINGFC 772 (965)
Q Consensus 706 ~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~ 772 (965)
++++|+++|+++.. .| .|+ ...+..++.+|... |++++|++.|+++.+. + .+. ..++..++..+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 66666666666554 22 222 33556677788887 8999999999887654 2 221 246677888899
Q ss_pred hcCCHHHHHHHHHHhHhCCCC-----CChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHH
Q 046930 773 QKGDMEGALGFFLDFNTKGVS-----PDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLN 846 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~-----p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (965)
+.|++++|+++|++....-+. .+... +...+-++...|+...|.+.+++..+..+.. ....+...+..
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F------~~s~E~~~~~~ 240 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF------ASSREYKFLED 240 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS------TTSHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CCcHHHHHHHH
Confidence 999999999999998764322 12222 3445556678999999999999988743210 01112224556
Q ss_pred HHHHhhh--cCcHHHHHHHHHHH
Q 046930 847 FLISLCE--QGSILEAIAILDEI 867 (965)
Q Consensus 847 l~~~~~~--~g~~~~A~~~~~~~ 867 (965)
|+.++.. ...+++|+.-|+.+
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHccc
Confidence 6666643 45677777777654
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.87 E-value=0.00099 Score=72.86 Aligned_cols=143 Identities=14% Similarity=0.078 Sum_probs=98.2
Q ss_pred CcccHHHHHHHHHHHHh--c---CcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHcc--------CChHHHHHHHHHH
Q 046930 652 ITVNIVTYNTVIHSLCR--Q---GCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKE--------GQLLDAKKLFDRM 717 (965)
Q Consensus 652 ~~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 717 (965)
.+.|..+|...+++... . ++...|+.+|+++++.. |+ ...+..+..++... ++...+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 45566777777665432 2 23668888888888844 66 44455444333221 1233444444444
Q ss_pred HHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh
Q 046930 718 VLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796 (965)
Q Consensus 718 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (965)
... ..+.+...+..++-.+...|++++|...+++++.. .|+..+|..++..+...|+.++|++.|+++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 432 12345677888877777889999999999999984 67888899999999999999999999999855 78887
Q ss_pred HHHH
Q 046930 797 LGFL 800 (965)
Q Consensus 797 ~~~~ 800 (965)
.+|+
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 7765
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.83 E-value=0.001 Score=72.68 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+.+|..+.......|++++|...|++++..+ |+...|..+...+...|+.++|.+.|++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555555555555555543 34455555555555555555555555555544
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.82 E-value=0.00033 Score=68.93 Aligned_cols=101 Identities=6% Similarity=0.013 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCCHhhHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGAL-KPNVVSYTSLVI 128 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~ 128 (965)
|..-...+.+.|++++|+..|+.+++..+..+..+.++..++.+|...|++++|+..|+++++..+- +....++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333466799999999999999998544444689999999999999999999999999976411 223557778888
Q ss_pred HHHhcCChhHHHHHHHHHHHCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++...|+.++|...|+++++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999999998864
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.82 E-value=0.0004 Score=68.38 Aligned_cols=103 Identities=10% Similarity=-0.005 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.++..+..+..+.|++++|+..|+..++..+-.+ .+.++..++.+|...|++++|+..|+.+++..+..|..+.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333333567999999999999998764322 245788999999999999999999999999887668889999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.++...|++++|...|+++++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999864
No 182
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.81 E-value=0.055 Score=55.22 Aligned_cols=149 Identities=12% Similarity=0.129 Sum_probs=91.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
-+-.+-+.+++.+|.++|.++-+..-.. .+.+ .....-+.++++|. .++.+.....+....+..
T Consensus 12 Qgf~Lqkq~~~~esEkifskI~~e~~~~-~f~l--------------keEvl~grilnAff-l~nld~Me~~l~~l~~~~ 75 (549)
T PF07079_consen 12 QGFILQKQKKFQESEKIFSKIYDEKESS-PFLL--------------KEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF 75 (549)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHhhcc-hHHH--------------HHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc
Confidence 3445678899999999999987641100 0000 01223456667776 457777777777776653
Q ss_pred CCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHHc--CCCC------------CHhHHHHHHHHHHhcCCHhHHHHHHH
Q 046930 206 LRPNLITYTAII--FGFCKKGKLEEAFTVFKKVEDL--GLVA------------DEFVYATLIDGVCRRGDLDCAFRLLE 269 (965)
Q Consensus 206 ~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 269 (965)
+. ..|-.+. -...+.+.+++|++.+..-.+. +..+ |-..=+..+.++...|++.++..+++
T Consensus 76 ~~---s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 76 GK---SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred CC---chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 22 2233332 3356788999998888665543 2111 11222345567788999999999988
Q ss_pred HHHHC----CCCCCHHHHHHHHHHHHhc
Q 046930 270 DMEKK----GIKPSIVTYNTIINGLCKV 293 (965)
Q Consensus 270 ~~~~~----g~~~~~~~~~~l~~~~~~~ 293 (965)
++..+ ....+..+|+.++-++.++
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 88654 3346788888876666543
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.79 E-value=5e-05 Score=57.57 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=37.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
...|++++|+..|+.+++.+ |.+..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677777777777777776 6677777777777777777777777777776644
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.083 Score=56.67 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=77.8
Q ss_pred HHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHH-------HHHHHhcCChHH
Q 046930 361 LEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM-SISSVACYNCI-------INGLCKSGMVDM 432 (965)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l-------~~~~~~~g~~~~ 432 (965)
.++|.++.+. .|.+..|..+.......-.++.|+..|-+...- +..-+.-...+ +..-.--|++++
T Consensus 679 ledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred hHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 4555554432 478888888888777777778787777654332 11111101100 111122478888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhccc-ccchhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 046930 433 ATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRS-EIYDIICNDVISFLCKRGSSEVASELYMFM 510 (965)
Q Consensus 433 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (965)
|.++|-.|-++++ .+....+.|++-.+.++++.-..-.. ..-..+|+.++..+.....+++|.+.|...
T Consensus 753 aek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 753 AEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888877655421 22333445555555555443221111 123378888888898889999998888764
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.0012 Score=55.57 Aligned_cols=113 Identities=14% Similarity=0.187 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
..+.....+ ...|++++|+..|+.++.. |.... ...+..++..+...|++++|+.+|+......+..+.+......
T Consensus 3 ~~~~~A~a~-d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAH-DSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHH-HhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 445566666 7899999999999999874 54443 4578889999999999999999999999876321226666666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
++-++...|++++|++++-.++. ++...|..-+..|.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 77788999999999999988875 33335555555543
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=97.73 E-value=0.00079 Score=58.94 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.....+.-+...|++++|..+|.-+.-.+ |.+++-|..++.++...+++++|+..|..+...+ +.|+......+.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agq 113 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHH
Confidence 34556666789999999999999999888 7888999999999999999999999999998876 567777888999
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 046930 129 ALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~ 149 (965)
++...|+.+.|...|+.++..
T Consensus 114 C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999863
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.72 E-value=0.025 Score=53.72 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=60.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV 121 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 121 (965)
..+..-+..-.+.|++++|.+.|+.+....+..|-...+...++-++.+.+++++|+..+++.+...+-.||..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 34444555577889999999999999998877788888899999999999999999999999998875555554
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.0018 Score=61.82 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGT-LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.|+.-+..| +.|+|..|...|...++.-+- .-.+.++..|++++..+|++++|..+|..+.+..+.+|..++++..+
T Consensus 144 ~Y~~A~~~~--ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY--KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 455555543 677788888888777764321 11244566777777788888888888888777777777777778888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.+..+.|+.++|..+|+++.+.-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 888888888888888888877754
No 189
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00072 Score=67.79 Aligned_cols=127 Identities=12% Similarity=0.064 Sum_probs=100.1
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCC----CC---------CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGT----LP---------SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
+..| .+.|+|..|...|++++.--+. ++ -..++..++.++.+.+.+..|+.....++..+ |.|
T Consensus 215 Gn~~-fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N 290 (397)
T KOG0543|consen 215 GNVL-FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD---PNN 290 (397)
T ss_pred hhHH-HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCc
Confidence 3445 6889999999999998764431 11 12367889999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHHC
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN-EVNELFVRMESE 149 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~ 149 (965)
..+++..+.++...|+++.|+..|+++++.. |.|-.+-..+..+-.+...+. ...++|..|...
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999976 555555555665544444444 446788888764
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00017 Score=54.01 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.++..+...|++++|+..|+++++.. |.+...+..++.++...|++++|...|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46889999999999999999999876 6678899999999999999999999999998764
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.62 E-value=0.00021 Score=54.12 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=55.8
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.+.|++++|+..|+.++... |.+..+...++.+|.+.|++++|..+++.+...+ |.++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHHHh
Confidence 47899999999999999876 5688899999999999999999999999999998 66666665554
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.0011 Score=63.13 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-CHhhHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP-NVVSYTSLVIA 129 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~ 129 (965)
...+-.+.+.|++..|...|...++..++.+..+.+++.++.++...|++++|...|..+.+..+-.| -+..+..++.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 34444577889999999999999999987788889999999999999999999999999998653333 34689999999
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 046930 130 LCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..+.|+.++|...|+++++.-
T Consensus 225 ~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHC
Confidence 999999999999999999874
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.58 E-value=0.1 Score=52.08 Aligned_cols=207 Identities=14% Similarity=0.085 Sum_probs=124.0
Q ss_pred chhhHHHHHHHHH-HccCCchHHHHHHHHHHHhCCCCCCHHhHHH--HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 9 QSRFFDSLIQGFC-IKRNDPEKALLVLKDCLRNHGTLPSSFTFCS--LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 9 ~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.+..|..|...+. .-.||-..|.+.-.+..+.- ..|...... -+++-.-.|+++.|.+-|+.|+... ....-
T Consensus 81 RdrgyqALStGliAagAGda~lARkmt~~~~~ll--ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---EtRll 155 (531)
T COG3898 81 RDRGYQALSTGLIAAGAGDASLARKMTARASKLL--SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP---ETRLL 155 (531)
T ss_pred hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhh--hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---HHHHH
Confidence 3446677776653 35688888888777654322 334443333 3455567899999999999998642 11111
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
-+..+.-.-.+.|..+-|+++-+++-... |.-...+...+...+..|+|+.|+++.+.-+...
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--------------- 218 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--------------- 218 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH---------------
Confidence 22333334457899999999999998765 4555688899999999999999999998877532
Q ss_pred hhhcCCCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 166 MVDKGIKPDTVS--YTILLDGFS---KEGTIEKAVGILNKMIEDRLRPNLIT-YTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 166 ~~~~~~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
-+.+++.- -..|+.+-. -..+...|...-.+..+. .|+... -..-..++.+.|+..++-.+++.+-+.
T Consensus 219 ----vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 219 ----VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred ----hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 22344221 112222211 122344455544444443 333222 222345566666666666666666665
Q ss_pred CCCC
Q 046930 240 GLVA 243 (965)
Q Consensus 240 ~~~~ 243 (965)
.+.|
T Consensus 293 ePHP 296 (531)
T COG3898 293 EPHP 296 (531)
T ss_pred CCCh
Confidence 4333
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.58 E-value=0.00025 Score=54.67 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=51.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 54 VYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
..+|.+.+++++|+++++.++..+ |.++..+...+.++...|++.+|.+.|+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456888899999999999999988 7888999999999999999999999999999866
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.55 E-value=0.0025 Score=54.59 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=29.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
-+....+.|+|++|++.|+.+....+..+....+...++.+|.+.|++++|+..+++.++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33334444555555555555544443334444444455555555555555555555555444
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.52 E-value=0.0029 Score=54.14 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
..+..-+... .+.|+|+.|++.|..+....+..+ ...+...++.+|.+.+++++|+..++++++.++++|.-..++..
T Consensus 11 ~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3455555555 699999999999999766554433 35567789999999999999999999999999988888889998
Q ss_pred HHHHHHhcCC---------------hhhHHHHHHHHHHc
Q 046930 90 VVSGFCKIGK---------------PELAIGFFENAISL 113 (965)
Q Consensus 90 l~~~~~~~g~---------------~~~A~~~~~~~~~~ 113 (965)
.|-++..... ...|...|+++++.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 8888877665 55666666666654
No 197
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.48 E-value=0.0002 Score=45.44 Aligned_cols=33 Identities=36% Similarity=0.822 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD 795 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 795 (965)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666677777766666666665
No 198
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.45 E-value=0.00026 Score=44.93 Aligned_cols=33 Identities=33% Similarity=0.803 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 177 SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 177 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.0035 Score=63.25 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYN-LCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDG 735 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 735 (965)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+.. |...++.+.|.++|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777888888888888888888887543 2233444444444 33356666688888888876 56677778888888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEPDK---FTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (965)
+...|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+.+.+.++.+++.+ ..|+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhhh
Confidence 88888888888888888765 33333 3677777766778888888888888865 45553
No 200
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.43 E-value=0.00024 Score=44.63 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 176 VSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.0032 Score=55.24 Aligned_cols=94 Identities=10% Similarity=-0.092 Sum_probs=80.4
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
.....-.+ -+.|++++|..+|+-...-+ +.++..+..|+.++-..+++++|+..|..+...+ +.++......+.
T Consensus 40 iY~~Ay~~-y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---~~dp~p~f~agq 113 (165)
T PRK15331 40 LYAHAYEF-YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---KNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cCCCCccchHHH
Confidence 33444444 58999999999999977655 4567788999999999999999999999988877 567777889999
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 046930 93 GFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~ 112 (965)
+|...|+.+.|+..|+.++.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999987
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.17 Score=50.58 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=151.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHHcCChhh
Q 046930 392 KLGRIEEALEIFDELRRMSISSVACYNCIING--LCKSGMVDMATEVFIELNEKGLSLYVG--MHKIILQATFAKGGVGG 467 (965)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~g~~~~ 467 (965)
..|+-..|.++-.+..+.-..|......++.+ -.-.|+++.|.+-|+.|+.. |... -+.-+.-...+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45667777776666554433444444444443 33567778888888877752 2222 12222223344566666
Q ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHH
Q 046930 468 VLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVK 547 (965)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 547 (965)
+...-.+....-|... ..+...++..+..|+++.|+++.+........-...
T Consensus 173 Ar~yAe~Aa~~Ap~l~-WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~--------------------------- 224 (531)
T COG3898 173 ARHYAERAAEKAPQLP-WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV--------------------------- 224 (531)
T ss_pred HHHHHHHHHhhccCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh---------------------------
Confidence 6655555555444332 456666777788888888888877654422110000
Q ss_pred hcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHH
Q 046930 548 ENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTI 627 (965)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 627 (965)
.. -.. .....+-
T Consensus 225 --------ae-----------R~r-------------------------------------------------AvLLtAk 236 (531)
T COG3898 225 --------AE-----------RSR-------------------------------------------------AVLLTAK 236 (531)
T ss_pred --------HH-----------HHH-------------------------------------------------HHHHHHH
Confidence 00 000 0000000
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHH-HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 046930 628 VAALCREGYVNKALDLCAFAKNKGITVNIVTYN-TVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQ 706 (965)
Q Consensus 628 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 706 (965)
...... -+...|...-.+..+. .|+...-. .-...+.+.|+..++-.+++.+=+.. |.+.+....+ +.+.|
T Consensus 237 A~s~ld-adp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~g- 308 (531)
T COG3898 237 AMSLLD-ADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSG- 308 (531)
T ss_pred HHHHhc-CChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCC-
Confidence 001111 1234444444444332 44443222 23356677777777777777776644 3333322222 22333
Q ss_pred hHHHHHHHHHHHHC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHH-hcCCHHHHHHH
Q 046930 707 LLDAKKLFDRMVLK-GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFC-QKGDMEGALGF 783 (965)
Q Consensus 707 ~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~ 783 (965)
+-++.-+++..+. ..+| +.++...++.+-...|++..|..--+.... ..|....|..|...-. ..|+-.++.+.
T Consensus 309 -dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 309 -DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred -CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 3333333333321 2333 455666667777777777777766666665 3677777777766654 33777777777
Q ss_pred HHHhHhCCCCCC
Q 046930 784 FLDFNTKGVSPD 795 (965)
Q Consensus 784 ~~~~~~~~~~p~ 795 (965)
+-+......+|.
T Consensus 386 lAqav~APrdPa 397 (531)
T COG3898 386 LAQAVKAPRDPA 397 (531)
T ss_pred HHHHhcCCCCCc
Confidence 777665444443
No 203
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.38 E-value=0.0044 Score=50.84 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH--hhHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV--VSYTSLV 127 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~ 127 (965)
...-+.++...|+++.|++.|.+.+..- |.++.+|+..+.++.-+|+.++|++-++++++..|..... .+|..-+
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 4445567889999999999999999987 8899999999999999999999999999999976433222 2566777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC
Q 046930 128 IALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..|...|+.+.|..-|+.+-+.|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 78888999999999999988765
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.004 Score=62.83 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK-IGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
+|..+++..-+.+..+.|..+|.++.+.. +.+..+|...+..-.. .++.+.|..+|+.+++. ++.+...|...+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 34444444555555555556665555332 3344455555555333 33444456666555554 244555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..+...++.+.|..+|++.+.. +. ... ....|...+..=.+.|+.+.+..+..++.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~------------------~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LP------------------KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SS------------------CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cC------------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555542 00 001 123455555555555555555555555554
No 205
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.33 E-value=0.00037 Score=43.76 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 046930 658 TYNTVIHSLCRQGCFVEAFRLFDSLERIDMV 688 (965)
Q Consensus 658 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 688 (965)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.33 E-value=0.1 Score=55.45 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHH
Q 046930 634 EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKL 713 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 713 (965)
+|-.+-++++-.++... +..+...+...+.+...+.-|.++|.+|-. ...+++.....+++.+|..+
T Consensus 729 ~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred ccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhh
Confidence 34444444444433322 444555555555566666777777766532 23455566677777777777
Q ss_pred HHHHHHCCCCCChhh-----------HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 046930 714 FDRMVLKGFKPSTRI-----------YNSFIDGYCKFGQLEEAFKFLHDLKIN 755 (965)
Q Consensus 714 ~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 755 (965)
-++.-+ +.||+.. +.---.+|.++|+-.||..+++++...
T Consensus 796 Ae~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 796 AEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 666544 2344321 122234566677777777777776543
No 207
>PRK11906 transcriptional regulator; Provisional
Probab=97.30 E-value=0.012 Score=60.98 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=96.0
Q ss_pred CchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhc---------CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 26 DPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQ---------GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
+.+.|+.+|.+++..+...|+ ...|..++.++... ....+|.+.-+++++.+ |.|+.+...++.+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld---~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT---TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Confidence 345788899999955544444 44555555444322 34567888889999999 899999999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
-.|+++.|..+|+++...+ |....+|...+..+.-.|+.++|.+.+++..+..
T Consensus 350 ~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 9999999999999999976 6667788888888888999999999999988764
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.079 Score=49.83 Aligned_cols=137 Identities=11% Similarity=0.067 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh-----hHHH
Q 046930 622 VDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEV-----SYAT 696 (965)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ 696 (965)
...+.++..+.-.|.+.-....+.++++...+.++.....|++.-.+.|+.+.|..+|+...+..-..|.. ....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 33456666666677777888888888887666677777888888888888888888888766532223322 2333
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh
Q 046930 697 LIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK 761 (965)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 761 (965)
....|.-++++.+|...|.+++..+ +.|+...|+-+-++.-.|+..+|++..+.|... .|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCcc
Confidence 3445666778888888888887753 446666677777777778888888888888764 4543
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0041 Score=62.55 Aligned_cols=131 Identities=15% Similarity=0.043 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC----CCC--------CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDEN----VKY--------PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP 118 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 118 (965)
.--++.|.+.|+|..|...|++++..= ... .....++..++-++.+.++|..|++..++++..+ ++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CC
Confidence 345667889999999999999865521 000 1123467889999999999999999999999988 89
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHH
Q 046930 119 NVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE-KAVGI 197 (965)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~ 197 (965)
|+.+.+.-++++...|+++.|+..|+++++..| .|-.+-+.|+..-.+...+. ...++
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P---------------------~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEP---------------------SNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998632 23444455555544444443 44778
Q ss_pred HHHHHHC
Q 046930 198 LNKMIED 204 (965)
Q Consensus 198 ~~~~~~~ 204 (965)
|..|...
T Consensus 349 y~~mF~k 355 (397)
T KOG0543|consen 349 YANMFAK 355 (397)
T ss_pred HHHHhhc
Confidence 8888654
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.1 Score=49.12 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.+.+.+++++.-.|.|.-.+..+.+.++.+ .+.++.....+++.-.+.|+.+.|...|+++.+..-..|
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~---------- 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD---------- 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh----------
Confidence 456778888888899999999999999866 456777888999999999999999999998775422111
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
++.-+..+.-.....|.-++++..|...|.+.+..+.. |+..-|.-.-++.-.|+..+|++.++.|...-
T Consensus 247 -----~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 247 -----GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred -----ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 12222222333334466678899999999988887654 66666766666667789999999999998763
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.24 E-value=0.2 Score=47.75 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.|..-+..- .+.|++++|...|+.+....+..| ...+...++.++.+.+++++|+..+++.+...+++|.-..++...
T Consensus 36 ~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 444455554 699999999999999887775533 455677788899999999999999999999998877777777777
Q ss_pred HHHHHh
Q 046930 91 VSGFCK 96 (965)
Q Consensus 91 ~~~~~~ 96 (965)
+.++..
T Consensus 115 gLs~~~ 120 (254)
T COG4105 115 GLSYFF 120 (254)
T ss_pred HHHHhc
Confidence 776443
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.20 E-value=0.35 Score=49.71 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=83.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHH------HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFV------CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
.+-+++++.+|.++|.++.+.. ..++.. .+.++++|.. .+.+..........+.. +.....-...+-.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~---~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK---ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--GKSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh---hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 4567788888888888887765 222222 2345555543 45555555555444433 3333322233333
Q ss_pred HHhcCChhHHHHHHHHHHHC--CCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 046930 130 LCMLGRVNEVNELFVRMESE--GLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL- 206 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 206 (965)
..+.+.+++|.+.+..-... +-.|. |+.-. -...-+|...-+..+..+...|++.++..+++++...-.
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~------~Ld~n--i~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESP------WLDTN--IQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccc------hhhhh--HHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 56788888888877665543 11000 00000 000012333345666777888999999888888876422
Q ss_pred ---CCCHHHHHHHHHHHHh
Q 046930 207 ---RPNLITYTAIIFGFCK 222 (965)
Q Consensus 207 ---~~~~~~~~~l~~~~~~ 222 (965)
.-+..+|+.++-.+++
T Consensus 161 rE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hhhcccHHHHHHHHHHHhH
Confidence 2467777776655544
No 213
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.20 E-value=0.028 Score=51.02 Aligned_cols=165 Identities=18% Similarity=0.101 Sum_probs=102.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
|..+.+++.++--+...|+++.|.+.|+...+.+ |....+....+-.+..-|++..|.+-|.+.-..++..|-...|
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 4456778888877888899999999999999988 6666777777777888899999999888888776222222344
Q ss_pred HHHHHHHHhcCChhHHHH-HHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNE-LFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMI 202 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 202 (965)
..+.. +.-+..+|.. +.++..+ .|...|-..|..|.- |+.. ...+++++.
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~------------------------~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEK------------------------SDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHh------------------------ccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 43332 2345556654 3444443 344444433333321 1111 122223332
Q ss_pred HCCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 203 EDRLR------PNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 203 ~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
...-. .-..||--+..-+...|+.++|..+|+-.+..+
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 21100 013567778888888888888888888887765
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.19 E-value=0.0016 Score=50.09 Aligned_cols=54 Identities=30% Similarity=0.292 Sum_probs=39.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 769 NGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
..|.+.+++++|++++++++. +.|+... +..++.++...|++++|...++++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456677788888888887755 5665544 66677777788888888888888776
No 215
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.16 E-value=0.19 Score=45.95 Aligned_cols=186 Identities=17% Similarity=0.091 Sum_probs=104.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (965)
.|-..|-+.-|.--|.+.+... |.-+.+++-++-.+...|+++.|.+.|+...+.+ |....+..+-+-++.-.|+
T Consensus 74 lYDSlGL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCc
Confidence 3444556666666677777776 6677777878777778888888888888877765 4444555555555556677
Q ss_pred hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHH
Q 046930 136 VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGIL-NKMIEDRLRPNLITYT 214 (965)
Q Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~ 214 (965)
+.-|.+-+.+.-+.++ -.|-...|..+.. +.-++.+|..-+ ++..+. |..-|.
T Consensus 149 ~~LAq~d~~~fYQ~D~-------------------~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG 202 (297)
T COG4785 149 YKLAQDDLLAFYQDDP-------------------NDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWG 202 (297)
T ss_pred hHhhHHHHHHHHhcCC-------------------CChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhh
Confidence 7777776666655432 1233344444332 233455554433 333332 334444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046930 215 AIIFGFCKKGKLEEAFTVFKKVEDLGLVAD-------EFVYATLIDGVCRRGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 275 (965)
..|..+.- |+..+ ..+++++.... ..+ +.||.-+...+...|+.++|..+|+-....+
T Consensus 203 ~~iV~~yL-gkiS~-e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 203 WNIVEFYL-GKISE-ETLMERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHH-hhccH-HHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33322222 22211 12233333221 111 3466667777777888888888888877653
No 216
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.045 Score=50.84 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=83.8
Q ss_pred cccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh----
Q 046930 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGT----LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSD---- 75 (965)
Q Consensus 4 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 75 (965)
+++.-..+.|..-..+| ....+|++|-..+.++.+..-. -+-...+...+-..-....|.++..+|+++..
T Consensus 25 ad~dgaas~yekAAvaf-RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAF-RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred CCchhhHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34445566888888887 8889999999998888853211 11233455555555566778888888887654
Q ss_pred cCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCC---HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 76 ENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGAL-KPN---VVSYTSLVIALCMLGRVNEVNELFVRM 146 (965)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~ 146 (965)
.+. |.....-...+.-...+-++++|+++|++....-.. ..+ ...+....+.+.+..++.+|-..+.+-
T Consensus 104 ~Gs--pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 104 CGS--PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred hCC--cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 232 333333333334455667788888888877643100 111 224445556666777777666655443
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.12 E-value=0.00075 Score=52.78 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=43.2
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CC---CC-HhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA-LK---PN-VVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
|....+++.++.+|...|++++|+..|+++++... .+ |+ ..++..++.++...|++++|++.+++..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456677777777777777777777777764310 11 11 33566777777777777777777777654
No 218
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.08 E-value=0.0061 Score=63.77 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIED--RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 172 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
+.+......+++.+....+++.+..++-+.... ....-..|.+++++.|...|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 456667777888888888899999999998875 222234566799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046930 250 TLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKV 293 (965)
Q Consensus 250 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 293 (965)
.|++.+.+.|++..|.++..+|...+.-.+..++...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998776665666666555556554
No 219
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.06 E-value=0.12 Score=51.09 Aligned_cols=200 Identities=16% Similarity=0.072 Sum_probs=120.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---cc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCC-C-HhhH-
Q 046930 625 STIVAALCREGYVNKALDLCAFAKNKGI---TV--NIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--DMVP-S-EVSY- 694 (965)
Q Consensus 625 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~-~~~~- 694 (965)
-.+..++.-.+.++++++.|+.+.+.-. .| ....+..|...|.+..++++|+-+..++... .+.. | ...|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3456666667778888888887664311 11 2246788899999999999998887766542 1221 1 2222
Q ss_pred ----HHHHHHHHccCChHHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-C
Q 046930 695 ----ATLIYNLCKEGQLLDAKKLFDRMVL----KGFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKIN----CLEP-D 760 (965)
Q Consensus 695 ----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~ 760 (965)
.-|.-++...|++-.|.+..++..+ .|-.+ -......++++|...|+.+.|+.-|+++... |-+- .
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq 285 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ 285 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH
Confidence 2344567888999999999888765 34232 2445578899999999999999888775432 2111 1
Q ss_pred hhHHHHHHHHHHhcCCH-----HHHHHHHHHhHhC----CCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 761 KFTVSAVINGFCQKGDM-----EGALGFFLDFNTK----GVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 761 ~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~----~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
..+...++..+....-. =+|+++-+++++. |.+-..-- ...++..|...|.-++=...+..+-+
T Consensus 286 v~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 286 VEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 22334444444322222 2366666666542 32222222 33466677678877776666666554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.04 E-value=0.0016 Score=50.88 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=46.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDE----NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
..++..++.+|...|++++|+..|+++++. +...|....++..++.++...|++++|++.|+++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345677777788888888888888877653 111122356778888888888888888888888775
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.03 E-value=0.49 Score=48.45 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhH-HHHH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKG-ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSY-ATLI 698 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 698 (965)
..+|...+....+..-++.|..+|-++.+.+ +.+++..+++++..++ +|+..-|..+|+--+..- ||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 4555666666666666777777777777776 5556667777776554 467777777777655532 443332 3334
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhH
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPS--TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFT 763 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 763 (965)
..+..-++-..|..+|+..+.. +..+ ..+|..+++--..-|++..+..+=+++.+ +-|...+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~ 537 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENL 537 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhH
Confidence 4455667777777777765543 2222 45666666666666777777766666665 3454433
No 222
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.02 E-value=0.012 Score=61.65 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHH
Q 046930 654 VNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--DMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNS 731 (965)
Q Consensus 654 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 731 (965)
.+......+++.+....+.+++..++-+.... ....-..|..+++..|.+.|..++++++++.=+..|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555555555555566666666555542 1112233445666666666666666666666555666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHH
Q 046930 732 FIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTV 764 (965)
Q Consensus 732 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 764 (965)
|++.+.+.|++..|.+++..|...+...+..|+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 666666666666666666555544333333333
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.00 E-value=0.45 Score=47.47 Aligned_cols=226 Identities=20% Similarity=0.160 Sum_probs=128.3
Q ss_pred CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCCCCchHHHHHHHHHHHhcCChhh
Q 046930 25 NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSD--ENVKYPFDNFVCSSVVSGFCKIGKPEL 102 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~ 102 (965)
+.+..+...+...+..................+...+++..+...+..... .. +.....+...+..+...+++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL---PNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc---cchHHHHHHHHHHHHHHhhHHH
Confidence 444555555555544321111245566666667777777777777777765 23 5566677777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCHhhHHHHHH-HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 103 AIGFFENAISLGALKPNVVSYTSLVI-ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
+...+....... +.+......... ++...|++++|...+.++....+. .......+...
T Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~ 173 (291)
T COG0457 114 ALELLEKALALD--PDPDLAEALLALGALYELGDYEEALELYEKALELDPE------------------LNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHcCC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------ccchHHHHHHh
Confidence 777777777643 112222222333 567777777777777776542110 00122333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL 261 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 261 (965)
...+...++.+.+...+..+...........+..+...+...++++.+...+......... ....+..+...+...+..
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRY 252 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCH
Confidence 3345566777777777777766522212455566666666667777777777776665311 123333333333355566
Q ss_pred hHHHHHHHHHHHC
Q 046930 262 DCAFRLLEDMEKK 274 (965)
Q Consensus 262 ~~A~~~~~~~~~~ 274 (965)
+.+...+.+....
T Consensus 253 ~~~~~~~~~~~~~ 265 (291)
T COG0457 253 EEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.96 E-value=0.0073 Score=62.46 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=45.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH---HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF---VCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
++..+..++.+|...|++++|+..|+++++.+ |.+.. +|+.++.+|...|++++|++.|+++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45567777777777777777777777777776 45553 3777777777777777777777777763
No 225
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.95 E-value=0.013 Score=47.25 Aligned_cols=68 Identities=16% Similarity=0.374 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcC--------CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 224 GKLEEAFTVFKKVEDLGL-VADEFVYATLIDGVCRRG--------DLDCAFRLLEDMEKKGIKPSIVTYNTIINGLC 291 (965)
Q Consensus 224 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 291 (965)
+++...-.+|+.+.+.|+ .|+..+|+.++.+.++.. ++-..+.+|.+|+..++.|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444333311 12334455555555555666666665555443
No 226
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.95 E-value=0.0011 Score=40.49 Aligned_cols=26 Identities=38% Similarity=0.862 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 046930 659 YNTVIHSLCRQGCFVEAFRLFDSLER 684 (965)
Q Consensus 659 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 684 (965)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.94 E-value=0.51 Score=47.05 Aligned_cols=200 Identities=21% Similarity=0.183 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNK-GITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY 699 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 699 (965)
...+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 466677778888888999998888887752 234456677778888888888999999999888754333 122222233
Q ss_pred -HHHccCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhc
Q 046930 700 -NLCKEGQLLDAKKLFDRMVLKGF--KPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVINGFCQK 774 (965)
Q Consensus 700 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 774 (965)
.+...|+++.|...+.+...... ......+......+...++.++|...+.++... .++ ...+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 68899999999999999866311 123444555555577889999999999999874 444 56788888888899
Q ss_pred CCHHHHHHHHHHhHhCCCCCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 775 GDMEGALGFFLDFNTKGVSPD-FLGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
+++++|...+..... ..|+ ...+..++..+...|.++++...+.+.++.
T Consensus 216 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999865 5555 344666777777778899999999999884
No 228
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.92 E-value=0.0012 Score=40.33 Aligned_cols=29 Identities=31% Similarity=0.653 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 177 SYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 177 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666544
No 229
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.92 E-value=0.016 Score=46.76 Aligned_cols=80 Identities=11% Similarity=0.230 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHhHH
Q 046930 178 YTILLDGFSKEGTIEKAVGILNKMIEDRL-RPNLITYTAIIFGFCKKG--------KLEEAFTVFKKVEDLGLVADEFVY 248 (965)
Q Consensus 178 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~ 248 (965)
-...|.-+...+++.....+|..+.+.|+ -|+..+|+.++.+..++. +.-..+.+|+.|...++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667778999999999999999999 899999999999887764 345678999999999999999999
Q ss_pred HHHHHHHHh
Q 046930 249 ATLIDGVCR 257 (965)
Q Consensus 249 ~~l~~~~~~ 257 (965)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.1 Score=48.59 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhhhcHHHHHHHHHhhhh
Q 046930 554 PMISKFLVQYLCLNDVTNALLFIKNMKE 581 (965)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 581 (965)
..+.+....|...+++++|...+.+..+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3445566667777777777766665543
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.83 E-value=0.0052 Score=63.50 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=60.6
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV---VSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
|.++.+++.++.+|...|++++|+..|+++++.+ |.+. .+|++++.+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999976 4444 35999999999999999999999999874
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.80 E-value=0.075 Score=55.37 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=106.7
Q ss_pred ChhHHHHHHHHHH---hcCCCCCCchHHHHHHHHHHHhc---------CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 62 NMSRAVEVLELMS---DENVKYPFDNFVCSSVVSGFCKI---------GKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 62 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
....|..+|.+++ +.+ |....+|..++.++... ....+|.+.-+++++.+ +.|+.+...++.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ld---p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~ 347 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ---TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLI 347 (458)
T ss_pred HHHHHHHHHHHHhhcccCC---cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 4568899999999 666 77788887777665542 23457888999999988 7888999999998
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
+...++++.|..+|+++...+ || ..+|........-.|+.++|.+.+++.++..+..
T Consensus 348 ~~~~~~~~~a~~~f~rA~~L~----------------------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 348 TGLSGQAKVSHILFEQAKIHS----------------------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHhhcchhhHHHHHHHHhhcC----------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 888999999999999998864 44 5555555555667999999999999988764332
Q ss_pred CHHH-HHHHHHHHHhcCChHHHHHHHHH
Q 046930 209 NLIT-YTAIIFGFCKKGKLEEAFTVFKK 235 (965)
Q Consensus 209 ~~~~-~~~l~~~~~~~g~~~~A~~~~~~ 235 (965)
-... ....+..|+.. ..+.|+++|-+
T Consensus 406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 406 RKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred hHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2222 22333455554 47777777654
No 233
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.051 Score=57.65 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCC--HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHc
Q 046930 249 ATLIDGVCRRGD--LDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 249 ~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 304 (965)
+..-.+|.+..+ +-+-..-++++.++|-.|+... +...++-.|++.+|.++|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 333445554444 3334445677778887777643 3455666788888888776
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.73 E-value=0.038 Score=54.39 Aligned_cols=231 Identities=14% Similarity=0.100 Sum_probs=137.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHc
Q 046930 631 LCREGYVNKALDLCAFAKNKG--ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--DMVPS---EVSYATLIYNLCK 703 (965)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 703 (965)
+....+.++|+..+.+.+.+- ...-..++..+..+.+..|.+++++..--.-+.. ..... -..|..|..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777776665541 0011235556667777778777765543222211 01111 2345566666666
Q ss_pred cCChHHHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CC--ChhHHHHHHHHHHhc
Q 046930 704 EGQLLDAKKLFDRMVLK-GFKPS---TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCL---EP--DKFTVSAVINGFCQK 774 (965)
Q Consensus 704 ~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~ 774 (965)
.-++.+++.+-+.-... |..|. -.....++.++...+.++++++.|+.+.+..- .| ...++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66677777766665543 33331 12234566777777788888888888765421 11 225677888888888
Q ss_pred CCHHHHHHHHHHhHh----CCCCCCh-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc-ccccH
Q 046930 775 GDMEGALGFFLDFNT----KGVSPDF-----LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV-ESESV 844 (965)
Q Consensus 775 g~~~~A~~~~~~~~~----~~~~p~~-----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 844 (965)
.++++|+-+..++.+ .++..-+ ...+.++.++...|++-.|.+.-+++.+.- -..|..+ -...+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla------l~~Gdra~~arc~ 249 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA------LQHGDRALQARCL 249 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH------HHhCChHHHHHHH
Confidence 888888877776644 2222211 235567778888888888888888776521 1112222 22356
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHH
Q 046930 845 LNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 845 ~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
..++..|...|+.|.|..-|++.
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHH
Confidence 66777888888888888888763
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.36 Score=49.74 Aligned_cols=167 Identities=13% Similarity=-0.039 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CcccHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhCCCCCCHhhH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKG---ITVNIVTYNTVIHSLCR---QGCFVEAFRLFDSLERIDMVPSEVSY 694 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~ 694 (965)
+.+...++-.|-...+++.-+++++.+...- +..+...-...+.++-+ .|+.++|++++..+....-.+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3334455556777778888888888776641 11111222234445555 77888888888775554445666777
Q ss_pred HHHHHHHH----c-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH----HHHHH----HHhhhCCC
Q 046930 695 ATLIYNLC----K-----EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEE----AFKFL----HDLKINCL 757 (965)
Q Consensus 695 ~~l~~~~~----~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~----~~~~~~~~ 757 (965)
..++..|- . ....++|++.|.+.-+. .|+...-.+++..+.-.|...+ ..++- ..+.+.|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 76665542 1 22467777777776653 4555554555555555554222 22222 11112232
Q ss_pred CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 758 EP---DKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 758 ~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
.. +..-+.+++.+..-.|++++|++.+++|..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 22 334445667777778888888888888865
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.25 Score=48.03 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH---H
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT---S 125 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~ 125 (965)
....-+......|++.+|...|..+.+.. |.+..+...++.+|...|+.+.|..++..+.... ....+. .
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~a 208 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQA 208 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHHH
Confidence 33444455778889999999999888888 6778888889999999999999988888764322 111222 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED- 204 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 204 (965)
-+..+.+.....+...+-+++-.. +.|...-..+...+...|+.+.|.+.+-.++++
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aad----------------------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAAD----------------------PDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344455555555555444444331 125666667777777788888887777666654
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChH
Q 046930 205 -RLRPNLITYTAIIFGFCKKGKLE 227 (965)
Q Consensus 205 -~~~~~~~~~~~l~~~~~~~g~~~ 227 (965)
+.. |...-..++..+.--|.-+
T Consensus 267 ~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 267 RGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred cccc-CcHHHHHHHHHHHhcCCCC
Confidence 222 4455556666655555333
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.4 Score=49.40 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCCChhhHH
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERID---MVPSEVSYATLIYNLCK---EGQLLDAKKLFDRMVLKGFKPSTRIYN 730 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 730 (965)
.+...++-+|....+++.-+++.+.+...- +......--..+.++-+ .|+.++|++++..++...-.+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344566677999999999999999998741 11122333345566667 899999999999976665577888988
Q ss_pred HHHHHHHhc---------CCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCH-H---HHHHHH---HHh-HhCCC-
Q 046930 731 SFIDGYCKF---------GQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDM-E---GALGFF---LDF-NTKGV- 792 (965)
Q Consensus 731 ~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~---~A~~~~---~~~-~~~~~- 792 (965)
.++.+|-.. ...++|+..|.+.-+. .||..+--+++..+...|.. + +..++- ..+ .+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 888877431 2478999999998774 57654433333344344432 2 222222 121 12332
Q ss_pred C--CChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 793 S--PDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 793 ~--p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
. .+.-.+.+++.+..-.|++++|.+.++++..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2 2333466788888889999999999999987
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.67 E-value=0.048 Score=49.01 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CCCCCChHH
Q 046930 728 IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNT-----KGVSPDFLG 798 (965)
Q Consensus 728 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 798 (965)
+...++..+...|++++|+..++++... .| |...|..++.+|...|+..+|++.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4567777888899999999999999884 66 678899999999999999999999998754 488888766
No 239
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.64 E-value=0.027 Score=50.46 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=73.8
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPS---SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG 98 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (965)
-.+|+|+.|..-|..++..-+-.+. +..|..-+.++.+.++|+.|+.-..++++.+ |....++...+.+|-+..
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHHHHHHhhh
Confidence 4789999999999998875432222 3356677788889999999999999999998 777788888899999999
Q ss_pred ChhhHHHHHHHHHHcC
Q 046930 99 KPELAIGFFENAISLG 114 (965)
Q Consensus 99 ~~~~A~~~~~~~~~~~ 114 (965)
++++|++-|.+++..+
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999865
No 240
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.63 E-value=1.3 Score=47.61 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=118.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATL 697 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 697 (965)
+++...|..-+.--.+.|+.+...-+|+...--. ..=...|-..+.-....|+.+-|..++....+.-.+..+.+-..-
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 3456677888888889999999999998876421 112235666666666779999999888887775433333332222
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHH---HHHHHhhhCCCCCChh--HHHHHHHH-
Q 046930 698 IYNLCKEGQLLDAKKLFDRMVLKGFKPST-RIYNSFIDGYCKFGQLEEAF---KFLHDLKINCLEPDKF--TVSAVING- 770 (965)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~--~~~~l~~~- 770 (965)
....-..|+++.|..+++.+.+. + |+. ..-..-+....+.|+.+.+. .++.........+... .+......
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 23355678999999999999986 4 543 33344456677888888888 4444443321222211 11111111
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCC
Q 046930 771 FCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKG 810 (965)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g 810 (965)
+.-.++.+.|..++.++.+ +.|+..+ |..++....-.+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 2345788999999999854 6776655 666776665443
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.57 E-value=0.0056 Score=41.00 Aligned_cols=41 Identities=15% Similarity=0.352 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
.++..++..|...|++++|++.|+++++.. |.|+..|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHhh
Confidence 345555555666666666666666655554 44444554443
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.56 E-value=0.061 Score=44.44 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=78.0
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHhcCCh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV-KYPFDNFVCSSVVSGFCKIGKP 100 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 100 (965)
...|+.+.|++.|..++... |..+.+|+.-++++--+|+.++|+.-++++++... .......++...+..|...|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 68899999999999999855 56788999999999999999999999999998753 1122345677888899999999
Q ss_pred hhHHHHHHHHHHcC
Q 046930 101 ELAIGFFENAISLG 114 (965)
Q Consensus 101 ~~A~~~~~~~~~~~ 114 (965)
+.|..-|+.+-+.+
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99999999999876
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.48 E-value=0.0059 Score=40.89 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
.++..++..|...|++++|+++|+++++.+ |.++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~---P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD---PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCCHHHHHHhhh
Confidence 456778888888999999999999988888 788888877764
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.48 E-value=1.2 Score=51.78 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHccCChHHH
Q 046930 635 GYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEV----SYATLIYNLCKEGQLLDA 710 (965)
Q Consensus 635 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A 710 (965)
++++.|+..+..+- ...|.-.++.-.+.|-+.+|+.++. |+.. .|.+..+-+...+.+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 66777776665543 2233444455556777777777663 4433 344444555667777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 711 KKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFT--VSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
.-+|+..=+. .--+.+|..+|++++|..+..++.. .-|... -..|+.-+...++.-+|-++..+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 7777765321 1234567778888888887777642 223322 2566777778888888888877753
Q ss_pred hCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 046930 789 TKGVSPDFLGFLYLVKGLCTKGRMEEARSILREML 823 (965)
Q Consensus 789 ~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 823 (965)
+ .|.. -+..|++.-.|++|+.+.....
T Consensus 1027 s---d~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 S---DPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred c---CHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 2 3332 2334677778888877665443
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=1.9 Score=47.54 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHH
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGF 771 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 771 (965)
.+.+--+.-+..-|+..+|.++-++.. -||...|..-+.+++..+++++-+++-+... .+.-|.-...+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444555667888888988877764 5788888888999999999988666555442 255667778889
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 046930 772 CQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREM 822 (965)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 822 (965)
.+.|+.++|.+++-+. .|+. -.+.+|.+.|++.+|.+..-+-
T Consensus 755 ~~~~n~~EA~KYiprv--~~l~-------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV--GGLQ-------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HhcccHHHHhhhhhcc--CChH-------HHHHHHHHhccHHHHHHHHHHh
Confidence 9999999999998775 2322 4777889999999998765443
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.1 Score=50.91 Aligned_cols=152 Identities=13% Similarity=0.042 Sum_probs=100.7
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHH
Q 046930 668 RQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPST----RIYNSFIDGYCKFGQLE 743 (965)
Q Consensus 668 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 743 (965)
..|++.+|...++++++. ++.|...+..-=++|...|+.+.-...+++++-. ..++. ..-..++-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777888888887764 4556666666667788888888888888887754 23333 22234455667788888
Q ss_pred HHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---hHHHHHHHHHHhcCCCHHHHHHHH
Q 046930 744 EAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD---FLGFLYLVKGLCTKGRMEEARSIL 819 (965)
Q Consensus 744 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~eA~~~~ 819 (965)
+|++..++..+. .| |..+..+....+...|++.++.++..+-.+.=-..+ ...|-..+-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888888888774 44 566667777778888888888887765422100111 112444555566678888888888
Q ss_pred HHHH
Q 046930 820 REML 823 (965)
Q Consensus 820 ~~~~ 823 (965)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7644
No 247
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.35 E-value=0.099 Score=48.28 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 172 KPDTVSYTILLDGFSK-----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC 221 (965)
Q Consensus 172 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (965)
..+-.+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|+.++=
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 3566677777777654 4666667777777777777778888887776653
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=1.5 Score=45.08 Aligned_cols=135 Identities=18% Similarity=0.181 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERID-MVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDG 735 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 735 (965)
..|...+++..+..-++.|..+|-++.+.+ +.++..++++++.-+ ..|+..-|..+|+--+.. ++.+....+-...-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 455666666666777888888888888876 556777788877744 567778888888866554 23333333455556
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (965)
+...|+-+.|..+|++.... +..+ ..+|..++.-=..-|+...+..+-+++.+ +.|-.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe 535 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE 535 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence 67778888888888866543 2223 34666676655666777777777776644 45543
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.33 E-value=0.16 Score=55.60 Aligned_cols=166 Identities=20% Similarity=0.111 Sum_probs=114.6
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHH-----hHHHHHHHHH----hcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSF-----TFCSLVYSFC----SQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
...++... ...||=+.+++.+..+.+..++...-. .|...+..+. .....+.|.++++.+.+.. |..
T Consensus 191 ~~kll~~v-GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 191 VLKLLSFV-GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHhhc-CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 34444544 678999999999999887555432211 2333333332 2457788999999999988 788
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhH
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP--NVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCW 161 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (965)
...+...++.+...|+.++|++.|+++.....--+ ....+..++-.+....+|++|...|.++.+..-
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~---------- 336 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK---------- 336 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc----------
Confidence 88888999999999999999999998874220111 223566777888999999999999999987521
Q ss_pred HhhhhhhcCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 046930 162 ICGQMVDKGIKPDTVSYTILLD-GFSKEGTI-------EKAVGILNKMIE 203 (965)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~ 203 (965)
=+...|..+.. ++...|+. ++|.++|.++..
T Consensus 337 -----------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 337 -----------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred -----------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 12333443333 34456776 777777777654
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.047 Score=49.05 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.++..++..+...|++++|+...++++..+ |-+...|..++.+|...|+..+|...|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467778888899999999999999999987 67788999999999999999999999998875
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.18 E-value=0.0061 Score=38.07 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=26.0
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
.+.++..|.+.|++++|++.|+++++..|+|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4455555999999999999999999999987
No 252
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=2.8 Score=46.40 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=88.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHH
Q 046930 723 KPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYL 802 (965)
Q Consensus 723 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 802 (965)
.-...+.+--+.-+...|+..+|.++-++.. -||-..|+.-+.++...+++++-.++-+.. ++ +..|...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk-----ks-PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK-----KS-PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-----CC-CCCchhH
Confidence 3334455555566778899999999888875 688888888889999999999988876654 21 3457778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHH
Q 046930 803 VKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDE 866 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 866 (965)
..+|.+.|+.+||.+++-++.. +.....+|.+.|.+.+|.++.-+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~-------------------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG-------------------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC-------------------hHHHHHHHHHhccHHHHHHHHHH
Confidence 8899999999999999866543 11566778889999999998654
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=3 Score=46.77 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=107.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 046930 179 TILLDGFSKEGTIEKAVGILNKMIEDRLRPN--LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVC 256 (965)
Q Consensus 179 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (965)
..-+....+..-++-|..+-.. .+..++ .......+.-+.+.|++++|...|-+-+..- .| ..++.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhc
Confidence 3455566677777777765433 222222 1222333455678899999999988776431 22 23445556
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHH--HHHHHHHhhhcCChhHHHHHHH
Q 046930 257 RRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVT--YSTLLHGYIEEDNVNGILETKQ 334 (965)
Q Consensus 257 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 334 (965)
....+..-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.+..+..+..... .-..+..+.+.+-.+.|..+-.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 666777778888898888876 5666778899999999999888877666522221 2233344444444454444333
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 046930 335 RLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMP 372 (965)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (965)
... ........+ +-..+++++|++.++.+.
T Consensus 488 k~~-----~he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFK-----KHEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhc-----cCHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 322 122333333 345688999999988764
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.11 E-value=1.8 Score=43.75 Aligned_cols=126 Identities=15% Similarity=0.017 Sum_probs=78.0
Q ss_pred HccCCchHHHHHHHHHHHhC-CCCCC-----HHhHHHHHHHHHhcC-ChhHHHHHHHHHHhc----C---CCCCC----c
Q 046930 22 IKRNDPEKALLVLKDCLRNH-GTLPS-----SFTFCSLVYSFCSQG-NMSRAVEVLELMSDE----N---VKYPF----D 83 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~---~~~~~----~ 83 (965)
.++|+++.|...+.++-... ...|+ ...+...+......+ +++.|..+++++.+. . ...|. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 67899999999999965544 22333 123444555556667 888888888876654 1 11111 1
Q ss_pred hHHHHHHHHHHHhcCChh---hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 84 NFVCSSVVSGFCKIGKPE---LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
..++..++.+|...+.++ +|....+.+.... +..+..+..-+.++.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234566677777766654 4555555554433 334556656666676778888888888888763
No 255
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.11 E-value=0.07 Score=49.24 Aligned_cols=87 Identities=26% Similarity=0.447 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc----------------CCHhHHHH
Q 046930 208 PNLITYTAIIFGFCKK-----GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR----------------GDLDCAFR 266 (965)
Q Consensus 208 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~ 266 (965)
.+..+|..++..+.+. |..+-....++.|.+.|+..|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3778888888877644 67788888899999999999999999999986431 23567999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046930 267 LLEDMEKKGIKPSIVTYNTIINGLCKVG 294 (965)
Q Consensus 267 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g 294 (965)
++++|...|+-||..++..++..+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 9999999999999999999999986544
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.11 E-value=0.27 Score=53.73 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCH-----hhHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCCChhhH
Q 046930 660 NTVIHSLCRQGCFVEAFRLFDSLERID-MVPSE-----VSYATLIYNLC----KEGQLLDAKKLFDRMVLKGFKPSTRIY 729 (965)
Q Consensus 660 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~ 729 (965)
..++....=.||-+.+++.+.+..+.+ +.-.. ..|...+..+. .....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 335555555677777777777665521 11111 11222222222 355778899999999885 4555444
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHH-HHH
Q 046930 730 -NSFIDGYCKFGQLEEAFKFLHDLKINC--LEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLY-LVK 804 (965)
Q Consensus 730 -~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~ 804 (965)
..-+..+...|++++|++.|+++.... .+. ....+.-++..+...++|++|.+.|.++.+.+ .-+...|.. .+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 455777888999999999999876421 111 34567778888999999999999999997632 223444444 444
Q ss_pred HHhcCCCH-------HHHHHHHHHHHh
Q 046930 805 GLCTKGRM-------EEARSILREMLQ 824 (965)
Q Consensus 805 ~~~~~g~~-------~eA~~~~~~~~~ 824 (965)
++...|+. ++|.+++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 55578888 888888887765
No 257
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.01 E-value=1.3 Score=45.96 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc---CC--cc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-------CCCCCCH-
Q 046930 628 VAALCREGYVNKALDLCAFAKNK---GI--TV---NIVTYNTVIHSLCRQGCFVEAFRLFDSLER-------IDMVPSE- 691 (965)
Q Consensus 628 ~~~~~~~g~~~~A~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~- 691 (965)
...+.-.|++.+|.+++...--. |. .| +...||.|+-.+.+.|.+.-+..+|.++++ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 44556679999998887643211 21 11 234578888888889999988888888774 3655542
Q ss_pred ----------hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 046930 692 ----------VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKF 739 (965)
Q Consensus 692 ----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 739 (965)
.+||. .-.|...|++-.|.++|.+..+. +..++..|-.|+.+|...
T Consensus 327 ~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 22333 33477899999999999999886 677999999999988643
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.99 E-value=3 Score=45.12 Aligned_cols=353 Identities=12% Similarity=0.045 Sum_probs=194.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+..++.---...+.+.+..+|+.++... |.-.-.|...+..-.+.|..+.+.++|++.+.. +|-+...|.....
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLA 121 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 34444432223334466777788887776 666677888888888999999999999998873 5777778876665
Q ss_pred HHH-hcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 129 ALC-MLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGI-KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 129 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
-+. ..|+.+.....|+++.... |. -.....|...|..-..++++.....+|++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~v-------------------G~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-- 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYV-------------------GLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-- 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhc-------------------ccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh--
Confidence 443 4567777777888877631 11 134566777777777888899999999998874
Q ss_pred CCCHHHHHHHHHH---HHhc------CChHHHHHHHHHHHHc---C-CCCCHhHHHHHHHHHHh-cCCHhHHHHHHHHHH
Q 046930 207 RPNLITYTAIIFG---FCKK------GKLEEAFTVFKKVEDL---G-LVADEFVYATLIDGVCR-RGDLDCAFRLLEDME 272 (965)
Q Consensus 207 ~~~~~~~~~l~~~---~~~~------g~~~~A~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 272 (965)
| ...++..-.- +... ...+++.++-...... . ..+....+...+.--.. .+..+.+...+.+..
T Consensus 181 -P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~ 258 (577)
T KOG1258|consen 181 -P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV 258 (577)
T ss_pred -h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH
Confidence 1 1122222111 1111 1222222222222110 0 00111111111111110 111222222222211
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCcchHHH-HHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHH
Q 046930 273 KKGIKPSIVTYNTIINGLCKVGRTSDAEE-VSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVM 347 (965)
Q Consensus 273 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 347 (965)
.. -..+|+.-..-..+.-.++..+. -+..+ +++..+|...+......|+.+.+.-.++++.-....- ...
T Consensus 259 ~~----~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-~ef 333 (577)
T KOG1258|consen 259 SI----HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-DEF 333 (577)
T ss_pred HH----HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-HHH
Confidence 11 01111111111111111111111 01122 2356678888888889999999998888876432111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 046930 348 CNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKS 427 (965)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (965)
|-..+......|+.+-|..++....+..++..+.+...-....-..|+++.|..+++.+.+..|....+-..-+....+.
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 55555555566888888888877766554444443333333345577999999999999888755555555555666677
Q ss_pred CChHHHH
Q 046930 428 GMVDMAT 434 (965)
Q Consensus 428 g~~~~A~ 434 (965)
|..+.+.
T Consensus 414 ~~~~~~~ 420 (577)
T KOG1258|consen 414 GNLEDAN 420 (577)
T ss_pred cchhhhh
Confidence 7777776
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.19 Score=49.15 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=114.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH----HHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY----TSLV 127 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~ 127 (965)
.-+.....+|++.+|...++++++.. |.+.-++.-.=.++...|+.+.-...+++++..- .++...| ....
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~---PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDY---PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYA 182 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhC---chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHH
Confidence 33445667899999999999999887 8888999989999999999999999999998752 3454332 3444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNK------- 200 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------- 200 (965)
-.+..+|-+++|++..++..+.+ +-|.-+-..+..++--.|++.++.++..+
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN---------------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~ 241 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQIN---------------------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ 241 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCC---------------------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh
Confidence 55678999999999999988764 35666677777888888888888877542
Q ss_pred --HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 201 --MIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 201 --~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
|+. ...-|+.. -.+...+.++.|+++|+.-+
T Consensus 242 s~mla-----sHNyWH~A-l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 242 SWMLA-----SHNYWHTA-LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhHHH-----hhhhHHHH-HhhhcccchhHHHHHHHHHH
Confidence 443 22223332 34566689999999997754
No 260
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.94 E-value=0.0071 Score=37.52 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=20.5
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHH
Q 046930 70 LELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAI 104 (965)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 104 (965)
|+++++.+ |.++.+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~---P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN---PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC---CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555666 666666666666666666666664
No 261
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.91 E-value=0.037 Score=53.90 Aligned_cols=94 Identities=18% Similarity=0.088 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
.--++-|.++|+|++|+.+|...+..+ |.++..+...+.+|++..++..|..-.+.++..+ ..-..+|...+.+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQAR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHH
Confidence 334567889999999999999999988 8888999999999999999999999999998765 34455788888888
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 046930 131 CMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~ 149 (965)
...|+..+|.+-++.++..
T Consensus 176 ~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHhhHHHHHHhHHHHHhh
Confidence 8889999999999888875
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.89 E-value=0.0076 Score=37.64 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=26.6
Q ss_pred hhhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 933 FCYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 933 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
.++.++..|...|++++|+..|+++++..|+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 35566555999999999999999999999985
No 263
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.83 E-value=2.6 Score=43.19 Aligned_cols=109 Identities=20% Similarity=0.157 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHh
Q 046930 728 IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLC 807 (965)
Q Consensus 728 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 807 (965)
+.+..+.-+...|+...|.++..+.. -||..-|+..+.+|+..++|++-.++... .-. +..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHH
Confidence 44455566677888888888877663 57888899999999999999887776432 122 355888999999
Q ss_pred cCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHH
Q 046930 808 TKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDE 866 (965)
Q Consensus 808 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 866 (965)
+.|+..+|..+..++-. ..-+..|.+.|.+.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~~--------------------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIPD--------------------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCCh--------------------HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998876321 3345556789999999888554
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.66 E-value=0.29 Score=52.57 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=99.6
Q ss_pred HHHHhcCChhHHHHHHH--HHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 55 YSFCSQGNMSRAVEVLE--LMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 55 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
+...-.++++++.+... .++ ... | ......++..+.+.|.++.|+++-+ |+.. ......+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i--~--~~~~~~i~~fL~~~G~~e~AL~~~~----------D~~~---rFeLAl~ 330 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNI--P--KDQGQSIARFLEKKGYPELALQFVT----------DPDH---RFELALQ 330 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG------HHHHHHHHHHHHHTT-HHHHHHHSS-----------HHH---HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccC--C--hhHHHHHHHHHHHCCCHHHHHhhcC----------ChHH---HhHHHHh
Confidence 33456678888766665 122 111 2 4457788888888888888877643 3322 2333467
Q ss_pred cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 046930 133 LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLIT 212 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (965)
+|+++.|.+..++. ++...|..|.....++|+++-|++.|.+...
T Consensus 331 lg~L~~A~~~a~~~--------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------- 375 (443)
T PF04053_consen 331 LGNLDIALEIAKEL--------------------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------- 375 (443)
T ss_dssp CT-HHHHHHHCCCC--------------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------
T ss_pred cCCHHHHHHHHHhc--------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------
Confidence 88888888775332 5677899999999999999999999888642
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
+..|+-.|.-.|+.+.-.++.+.....| -++....++...|++++..+++.+.
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5566667888888888888877777665 2445555666678888887776553
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=1.4 Score=43.03 Aligned_cols=147 Identities=16% Similarity=0.081 Sum_probs=62.6
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 046930 667 CRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAF 746 (965)
Q Consensus 667 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 746 (965)
...|++.+|...|+...... +-+......++.+|...|+.+.|..++..+-..--.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34455555555555554432 11133344445555555555555555555433210111111122233344444444444
Q ss_pred HHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CChHHHHHHHHHHhcCCCHHHHHH
Q 046930 747 KFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVS-PDFLGFLYLVKGLCTKGRMEEARS 817 (965)
Q Consensus 747 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~eA~~ 817 (965)
.+-++.-. .| |...-..++..+...|+.+.|.+.+-.++..+.. -|...-..|+..+.-.|.-+.+..
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 33334333 34 3444445555555555555555555555432211 122233444444444443333333
No 266
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.57 E-value=0.11 Score=46.41 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC----------ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG----------KPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
|+.|.+.++.....+ |.+++.++.=+.++.... .+++|+.-|++++..+ |....++..++.+|..
T Consensus 7 FE~ark~aea~y~~n---P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN---PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN--PNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHH
Confidence 456777777767777 677777776666665542 2455677777777765 4445677777777765
Q ss_pred cCC-----------hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 133 LGR-----------VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201 (965)
Q Consensus 133 ~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 201 (965)
.+. +++|...|+++... .|+...|+.-+.... +|-++..++
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~----------------------~P~ne~Y~ksLe~~~------kap~lh~e~ 133 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDE----------------------DPNNELYRKSLEMAA------KAPELHMEI 133 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-----------------------TT-HHHHHHHHHHH------THHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhc----------------------CCCcHHHHHHHHHHH------hhHHHHHHH
Confidence 432 55666667766654 688899988877663 466777777
Q ss_pred HHCC
Q 046930 202 IEDR 205 (965)
Q Consensus 202 ~~~~ 205 (965)
.+++
T Consensus 134 ~~~~ 137 (186)
T PF06552_consen 134 HKQG 137 (186)
T ss_dssp HHSS
T ss_pred HHHH
Confidence 6654
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.45 Score=41.88 Aligned_cols=121 Identities=16% Similarity=0.050 Sum_probs=64.3
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHH
Q 046930 494 LCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNAL 573 (965)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 573 (965)
+.+.++.++|+.-|..+.+.|.. +...-+..+.+......|+..+|+
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g---------------------------------~YpvLA~mr~at~~a~kgdta~AV 114 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYG---------------------------------SYPVLARMRAATLLAQKGDTAAAV 114 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCC---------------------------------cchHHHHHHHHHHHhhcccHHHHH
Confidence 45667788888888777665522 111223456666777788888899
Q ss_pred HHHHhhhhcCccccchHHHHH-----HHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 574 LFIKNMKEISSTVTIPVNVLK-----KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFA 647 (965)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 647 (965)
..|+.+-...+.+.+.-.+++ .+...|.+++...-++.+...-.|....+-.+|+.+-.+.|++..|...|..+
T Consensus 115 ~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 115 AAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 888887766554443322222 34444444444444444333333333333334444444444444444444443
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.38 E-value=3.6 Score=41.69 Aligned_cols=166 Identities=18% Similarity=0.116 Sum_probs=98.4
Q ss_pred HHhcCChhHHHHHHHHHHhcC-CCCCCch----HHHHHHHHHHHhcC-ChhhHHHHHHHHHHc----C---CCCCCH---
Q 046930 57 FCSQGNMSRAVEVLELMSDEN-VKYPFDN----FVCSSVVSGFCKIG-KPELAIGFFENAISL----G---ALKPNV--- 120 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~---~~~~~~--- 120 (965)
..++|+++.|...+.++.... ...|... ..++.+|......+ +++.|..+++++.+. + ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999887754 2113322 34566777777888 999999999998765 2 122332
Q ss_pred --hhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046930 121 --VSYTSLVIALCMLGRVN---EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAV 195 (965)
Q Consensus 121 --~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 195 (965)
.+...++.+|...+..+ +|..+.+.+.+.. ...+..+..-+.++.+.++.+++.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---------------------~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY---------------------GNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---------------------CCCcHHHHHHHHHHhccCChhHHH
Confidence 23446666677666655 3444454454321 122455555666666688888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCH
Q 046930 196 GILNKMIEDRLRPNLITYTAIIFGF---CKKGKLEEAFTVFKKVEDLGLVADE 245 (965)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~ 245 (965)
+.+.+|+..-.- ....+...+..+ .. .....|...+..+....+.|..
T Consensus 142 ~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 142 EILMRMIRSVDH-SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhccc-ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 888888876221 223333333333 33 2345566666665544444443
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.38 E-value=2 Score=45.35 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHH
Q 046930 178 YTILLDGFSKEGTIEKAVGILNKMIEDRLR-PNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADE-FVYATLI 252 (965)
Q Consensus 178 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 252 (965)
-..+.....+.|+.++|.+.|.++.+..+. .+......|+.++...+.+.++..++.+..+...+.+. ..|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345666667889999999999988875433 23456677888888899999999888887655433222 3455443
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.29 E-value=0.41 Score=43.35 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSF---TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
+..|..++... +.+.+ +......+.....| .+.+ ....++..+...|++++|+..+.+.+..........-+
T Consensus 54 S~~Y~~~i~~~--~ak~~-~~~~~~ekf~~~n~--~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAV--QAKKP-KSIAAAEKFVQANG--KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHH--hcCCc-hhHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHH
Confidence 34566666553 34444 33344444443331 2222 34557778889999999999999988654211122234
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
-..+++.....|.+|+|+..++.....+ -.+......+.++...|+-++|+.-|++.+..+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4567888999999999999998765421 123345567889999999999999999998764
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=0.16 Score=45.84 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=74.3
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGT-LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF 94 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (965)
+...+ ...|+++.|+..++.++..... .-.+.+-.+|++.....|+++.|+..++.....+. .+..-...++++
T Consensus 95 lAk~~-ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDil 169 (207)
T COG2976 95 LAKAE-VEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDIL 169 (207)
T ss_pred HHHHH-HhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhHH
Confidence 34554 7899999999999998853321 11244567889999999999999999998776642 334566789999
Q ss_pred HhcCChhhHHHHHHHHHHcC
Q 046930 95 CKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~ 114 (965)
...|+-++|+..|++++...
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999999864
No 272
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.19 E-value=0.18 Score=45.12 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQ----------GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
|+.|.+.+....... |.|...+..-+-++... ..+++|+.-|+.++..+ |....++..++.+|..
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~---P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN---PNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHH
Confidence 456666666656555 45555555544444332 24567888888888899 8899999999999887
Q ss_pred cCC-----------hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 97 IGK-----------PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 97 ~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.+. |++|.+.|+++... .|+...|..-+... .+|-++..++.+.+
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 654 67788888888875 48888888777654 35777777776654
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.03 E-value=0.96 Score=48.70 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=46.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHH
Q 046930 632 CREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAK 711 (965)
Q Consensus 632 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 711 (965)
.+.|+++.|.++.++ .++...|..|+....++|+++-|.+.|++... +..|+-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345555555554322 12445666666666666666666666655322 334444455556555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046930 712 KLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHD 751 (965)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 751 (965)
++.+.....| -++....++.-.|++++..+++.+
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555443 122223333444555555554444
No 274
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.01 E-value=0.028 Score=34.67 Aligned_cols=31 Identities=10% Similarity=0.379 Sum_probs=26.7
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
.+.++..|.+.|++++|++.|++++..+|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4556556899999999999999999999974
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.00 E-value=0.1 Score=51.01 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=80.1
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
+..| -++|.|++|+..|...|... ++++.++..-+.+|.+..+|..|..-...++..+ .....+|+..+.+-..
T Consensus 104 GN~y-FKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 104 GNTY-FKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhh-hhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 3455 58899999999999998755 4577778888888999999999999999999888 5667899999999999
Q ss_pred cCChhhHHHHHHHHHHcC
Q 046930 97 IGKPELAIGFFENAISLG 114 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~ 114 (965)
.|+..+|.+-++.++...
T Consensus 178 Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALE 195 (536)
T ss_pred HhhHHHHHHhHHHHHhhC
Confidence 999999999999999864
No 276
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.00 E-value=0.029 Score=34.82 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=29.9
Q ss_pred HHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 046930 106 FFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNE 141 (965)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 141 (965)
+|+++++.+ |.++.+|+.++.+|...|++++|++
T Consensus 1 ~y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELN--PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 377888887 8889999999999999999999863
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.92 E-value=2.2 Score=44.97 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 730 NSFIDGYCKFGQLEEAFKFLHDLKINCLEP-D-KFTVSAVINGFCQKGDMEGALGFFLDF 787 (965)
Q Consensus 730 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (965)
..++.++.+.|+.+||++++++|.+.. ++ | ..+..+|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445555555555555555555554421 11 1 124444555555555555555555554
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.91 E-value=7.1 Score=44.10 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHH-----HHhcCcHHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHc
Q 046930 636 YVNKALDLCAFAKNKGITVNIVTYNTVIHS-----LCRQGCFVEAFRLFDSLER-------IDMVPSEVSYATLIYNLCK 703 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 703 (965)
....|...++...+.| +...-..++.+ +....+.+.|+.+|+.+.+ .+ .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 3567888888887775 44444444433 3456789999999998876 44 33355666666766
Q ss_pred cC-----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHH---
Q 046930 704 EG-----QLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFG---QLEEAFKFLHDLKINCLEPDKFTVSAVINGFC--- 772 (965)
Q Consensus 704 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 772 (965)
.. +.+.|+.+|.+..+.| .|+ ....++.++.... +...|.++|..+...| ...++-.+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~--a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPD--AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-Cch--HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCC
Confidence 43 5677999999998876 333 4445555554433 5789999999998865 2333333444441
Q ss_pred -hcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 773 -QKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 773 -~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
-.-+.+.|..++.+.-+.| .|...........+.. |+++.+.-.+..+.+.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 3347889999999998777 3332222223333344 8888888777766654
No 279
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.84 E-value=0.29 Score=44.13 Aligned_cols=99 Identities=14% Similarity=0.045 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPF--DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
..-++-+...|++++|..-|..+++.-+..+. ....|...+.++.+.+.++.|+.-..+++..+ |....+......
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAe 176 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAE 176 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHH
Confidence 34456678899999999999999998741111 23457778889999999999999999999976 555567777788
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
+|.+..++++|++-|.++.+..|
T Consensus 177 ayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCc
Confidence 89999999999999999998643
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.71 E-value=0.034 Score=34.62 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=25.6
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
++.++..|.+.|++++|++.|+++++..|+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4445445999999999999999999999964
No 281
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.62 E-value=4.4 Score=38.75 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=126.5
Q ss_pred cCCHHHHHHHHHHHHhcCCcccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhC---CCC--CCHhhHHHHHHHHHccC
Q 046930 634 EGYVNKALDLCAFAKNKGITVNI---VTYNTVIHSLCRQGCFVEAFRLFDSLERI---DMV--PSEVSYATLIYNLCKEG 705 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--~~~~~~~~l~~~~~~~g 705 (965)
...+++|+.-|+++++.....-. .+...++..+.+.+++++..+.|.+++.. .+. -+..+.+++++..+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45789999999998875322222 34566788889999999999999887642 121 23566788888777777
Q ss_pred ChHHHHHHHHHHHHC-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----C-------hhHHHHHHH
Q 046930 706 QLLDAKKLFDRMVLK-GFKPSTR----IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP----D-------KFTVSAVIN 769 (965)
Q Consensus 706 ~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~-------~~~~~~l~~ 769 (965)
+.+--.+.|+.-++. .-..|.. +-.-|+..|...|.+.+-.++++++-...... | ..+|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666666666654432 0112333 33578888999998888888888776542111 1 135656678
Q ss_pred HHHhcCCHHHHHHHHHHhHhC-CCCCChHHHH----HHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 770 GFCQKGDMEGALGFFLDFNTK-GVSPDFLGFL----YLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
.|....+-.+-..+|++.+-. .--|.+.... +=+.++.+.|++++|-.-|=++.+.++
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 888888878888888877531 2234333322 223456688999999887777776553
No 282
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.66 Score=43.40 Aligned_cols=126 Identities=13% Similarity=-0.054 Sum_probs=87.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcC
Q 046930 55 YSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLG 134 (965)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (965)
+.|....++..|+..|.+++..+ |..+.-|...+.++.+..+++.+.+--.++++.. +..+.....++..+....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhc
Confidence 34555667888888888888888 6676778888888888888888888888888854 344457777888888888
Q ss_pred ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 135 RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201 (965)
Q Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 201 (965)
.+++|+..++++....- .....+....+..|..+--+.-...+..++.++.
T Consensus 93 ~~~eaI~~Lqra~sl~r----------------~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLR----------------EQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cccHHHHHHHHHHHHHh----------------cCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88899888888754321 2223344555666665544444455555555444
No 283
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.60 E-value=6.3 Score=40.49 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHcCC-CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 046930 283 YNTIINGLCKVGRTSDAEEVSKGI-LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGAL 361 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 361 (965)
.+..+.-+...|+...|.++.+.+ .|+..-|...+.+++..++|++..+.... ..++.-|-.++..|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334455556667777777776655 36666677777777777777755543221 22346677778888888888
Q ss_pred HHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046930 362 EDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD 404 (965)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (965)
.+|..++..+.. ..-+..|.++|++.+|.+.-.
T Consensus 254 ~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHH
Confidence 888877766321 234566788888888776543
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=10 Score=42.89 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNV--VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.-..+..+++...|..|+.+-..-. .+++. ......+.-+.+.|++++|...|-+.+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--------------- 397 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--------------- 397 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---------------
Confidence 3455666667777777776655422 12222 13334555566778888887777666542
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD 244 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 244 (965)
++|. .++.-|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|..
T Consensus 398 ------le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~-- 462 (933)
T KOG2114|consen 398 ------LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW-- 462 (933)
T ss_pred ------CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--
Confidence 1111 2344455555666666677777777665 55566677778888877777555544433 2211
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCC
Q 046930 245 EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGD 309 (965)
Q Consensus 245 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 309 (965)
..-....+..+.+.+-.++|..+-..... +...... .+-..+++++|.+.+..+|++
T Consensus 463 ~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 463 FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 11123344555555556666555433322 2222222 234457778888877777654
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=3.2 Score=36.88 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=94.8
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch--
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN-- 84 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-- 84 (965)
.++-.|..-+.. .+.|..++|+..|.. +...|.-. ........+.+..+.|+-..|+..|+.+-...+. |.-.
T Consensus 57 ~sgd~flaAL~l--A~~~k~d~Alaaf~~-lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd 132 (221)
T COG4649 57 KSGDAFLAALKL--AQENKTDDALAAFTD-LEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRD 132 (221)
T ss_pred cchHHHHHHHHH--HHcCCchHHHHHHHH-HHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhH
Confidence 344456555553 578999999999999 44455422 2334556777788999999999999998776541 2111
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
.+-..-+-.+...|.|++.....+.+-..+ .+-....-..++-+-.+.|++.+|.++|..+...
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 122333445667899999888887765432 2333445668888889999999999999998763
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.31 E-value=0.11 Score=32.28 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+|..++.++...|++++|++.|+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456777777777777777777777777654
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.31 E-value=0.72 Score=42.60 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=76.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH--
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT-- 124 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-- 124 (965)
...+..++..|.+.|+.+.|++.|.++.+..........++..+++.....|++..+.....++........+....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 456889999999999999999999999887654345567789999999999999999999999876431122222211
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHH
Q 046930 125 --SLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 125 --~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.-+-.+...+++.+|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 222335568999999999877653
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.18 E-value=0.053 Score=34.26 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=20.7
Q ss_pred hHHHHhhhccchHHHHHHHHHHHhcccc
Q 046930 935 YSKVASFCSKGELQKANKLMKEMLSSFK 962 (965)
Q Consensus 935 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 962 (965)
..++..|.+.|+|++|+++|+++|+..+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3444459999999999999999665443
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.15 E-value=0.087 Score=32.72 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+|..++.+|...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 466777777777777777777777777654
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.13 E-value=0.094 Score=33.11 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
+|..++.+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777777777777777777754
No 291
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.11 E-value=2.5 Score=37.46 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
.++..+...+........++.+...+ +.++...+.++..|++.. ..+.++.++. ..+......+++.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~---~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN---SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC---ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 45555556666777777777776665 456666777777776542 3344444442 112233444556666
Q ss_pred hcCChhHHHHHHHHH
Q 046930 132 MLGRVNEVNELFVRM 146 (965)
Q Consensus 132 ~~~~~~~A~~~~~~~ 146 (965)
+.+.++++..++.++
T Consensus 81 ~~~l~~~~~~l~~k~ 95 (140)
T smart00299 81 KAKLYEEAVELYKKD 95 (140)
T ss_pred HcCcHHHHHHHHHhh
Confidence 666666666666554
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.99 E-value=0.71 Score=42.62 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHhC---CCCCChHHHH
Q 046930 726 TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK--FTVSAVINGFCQKGDMEGALGFFLDFNTK---GVSPDFLGFL 800 (965)
Q Consensus 726 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~ 800 (965)
...+..+++.|++.|+.++|++.|.++.+....|.. ..+..++......|++..+...+.++... +-.++...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 346778899999999999999999998886555543 45677788888889999988888887542 2222222222
Q ss_pred HHH--HHHhcCCCHHHHHHHHHHHHhcC
Q 046930 801 YLV--KGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 801 ~l~--~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
... -.+...|++.+|.+.|-.+....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 222 23446899999999988777654
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=13 Score=41.64 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRP---NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR 258 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (965)
+..+.+.+.+++|+.+-+..... .| -.......+..+.-.|++++|-...-.|.. .+...|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 34567788888888877665443 22 234456677788888899998888887773 3566666666666666
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 259 GDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 259 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 292 (965)
+.......+ +.......+..+|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655443332 2222122345566666655554
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.69 E-value=9 Score=38.88 Aligned_cols=150 Identities=14% Similarity=0.228 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc--c----CChHHHHHHHHHHHHCC-C--CCChhhHHHHHHHHHhcCC-
Q 046930 672 FVEAFRLFDSLERIDMVPSEVSYATLIYNLCK--E----GQLLDAKKLFDRMVLKG-F--KPSTRIYNSFIDGYCKFGQ- 741 (965)
Q Consensus 672 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~- 741 (965)
+++.+.+++.|.+.|++-+..+|.+....... . ....+|.++|+.|.+.. + .++...+..|... ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788888888888887776664433332 2 23567899999999862 1 1223333333221 3333
Q ss_pred ---HHHHHHHHHHhhhCCCCCCh-hHHHHHHHHHHh-cC--CHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHH
Q 046930 742 ---LEEAFKFLHDLKINCLEPDK-FTVSAVINGFCQ-KG--DMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEE 814 (965)
Q Consensus 742 ---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~e 814 (965)
.++++.+|+.+.+.|+..+. .-+.+-+-++.. .. ...++.++++.+.+.|+++...+|-.+|-.-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 36778889999988888743 233333333322 11 256889999999999999888777766654444444434
Q ss_pred HHHHHHHHH
Q 046930 815 ARSILREML 823 (965)
Q Consensus 815 A~~~~~~~~ 823 (965)
..+.+.++.
T Consensus 236 ~~~~i~ev~ 244 (297)
T PF13170_consen 236 IVEEIKEVI 244 (297)
T ss_pred HHHHHHHHH
Confidence 444444433
No 295
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.58 E-value=17 Score=41.72 Aligned_cols=326 Identities=8% Similarity=-0.009 Sum_probs=149.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (965)
...+.|++..+..+...+. .. |..+..-...+..-.....+++...++++-.. .|.....-......+.+.++
T Consensus 42 ~a~~~g~~~~~~~~~~~l~-d~---pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLK-DY---PLYPYLEYRQLTQDLMNQPAVQVTNFIRANPT---LPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHCCCHHHHHHHHHhcc-CC---CcHhHHHHHHHHhccccCCHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHccC
Confidence 3567778888777666552 22 43333322222222222234443333333111 12222233344445556666
Q ss_pred hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 046930 136 VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTA 215 (965)
Q Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (965)
+......+.. .+.+...-.....+....|+.++|......+=..|.. .+..+..
T Consensus 115 w~~~~~~~~~-------------------------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~ 168 (644)
T PRK11619 115 WRGLLAFSPE-------------------------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDK 168 (644)
T ss_pred HHHHHHhcCC-------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHH
Confidence 6665552211 0234444455666677777777666555555433322 3444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 046930 216 IIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIV-TYNTIINGLCKVG 294 (965)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g 294 (965)
++..+.+.|.+. +...+..+ ......|+...|..+...+. ++.. ....++..+ .
T Consensus 169 l~~~~~~~g~lt----------------~~d~w~R~-~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~---~ 223 (644)
T PRK11619 169 LFSVWQQSGKQD----------------PLAYLERI-RLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQ---N 223 (644)
T ss_pred HHHHHHHcCCCC----------------HHHHHHHH-HHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHH---H
Confidence 555444444322 22223222 22234455555544444331 1111 112222222 1
Q ss_pred CcchHHHHHcCCCCCHH--HHHHHHHHhhhcCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 295 RTSDAEEVSKGILGDVV--TYSTLLHGYIEEDNVNGILETKQRLEEAG-IQMD--IVMCNILIKALFMVGALEDARALYQ 369 (965)
Q Consensus 295 ~~~~a~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 369 (965)
+...+......++++.. ....+.-.-....+.+.|...+....... ..++ ..+...+.......+...++...+.
T Consensus 224 ~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~ 303 (644)
T PRK11619 224 DPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRD 303 (644)
T ss_pred CHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 22222323333322221 11111112223455567777776653332 1111 1223333333333322456666666
Q ss_pred HchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 370 AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELN 441 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (965)
...... .+.....--+......++++.+...+..|.........-..-+++++...|+.++|...|+++.
T Consensus 304 ~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 304 DVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred hccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 544322 2333344444455577777777777777655444455566667777667777777777777763
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.27 E-value=0.83 Score=44.97 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.++..++..+...|+++.+.+.+++.+..+ |-+...|..++.+|.+.|+...|+..|+++.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~--------------- 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT--------------- 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH---------------
Confidence 456678888899999999999999999987 778889999999999999999999999999863
Q ss_pred hhhhcCCCCCHHHHHHHHHH
Q 046930 165 QMVDKGIKPDTVSYTILLDG 184 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~ 184 (965)
.+...|+.|...+......+
T Consensus 217 ~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 217 LAEELGIDPAPELRALYEEI 236 (280)
T ss_pred hhhhcCCCccHHHHHHHHHH
Confidence 34467888888887777666
No 297
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=1.7 Score=40.86 Aligned_cols=119 Identities=10% Similarity=-0.099 Sum_probs=86.7
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
-...+|..|+..|.+++...+ ..+..|..-+-++.+..+|+.+..--.++++.. |..+...+.++........++
T Consensus 21 f~~k~y~~ai~~y~raI~~nP--~~~~Y~tnralchlk~~~~~~v~~dcrralql~---~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINP--TVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---PNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cchhhhchHHHHHHHHHhcCC--CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hHHHHHHHHHHHHHHhhcccc
Confidence 455678999999999998652 233456667778899999999999999999998 788899999999999999999
Q ss_pred hHHHHHHHHHHc---CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 046930 102 LAIGFFENAISL---GALKPNVVSYTSLVIALCMLGRVNEVNELFVR 145 (965)
Q Consensus 102 ~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 145 (965)
+|+..+.++.+. ..+++-...+..+..+--..-...+...+.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999999999543 22333344555555443333333344444333
No 298
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.19 E-value=2 Score=36.17 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHH
Q 046930 188 EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRL 267 (965)
Q Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 267 (965)
.|+.......+-.+- .+.......+..+..+|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.++
T Consensus 69 C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp -S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 445555554444332 134445566777888888888888888877643 67778888888888888888888888
Q ss_pred HHHHHHCCCC
Q 046930 268 LEDMEKKGIK 277 (965)
Q Consensus 268 ~~~~~~~g~~ 277 (965)
+.+.-++|.+
T Consensus 143 l~~ACekG~k 152 (161)
T PF09205_consen 143 LKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHhchH
Confidence 8888887754
No 299
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.07 E-value=12 Score=38.43 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=80.6
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh--
Q 046930 23 KRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK-- 96 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 96 (965)
..+++..|...+..+... .+......++..|.. ..+..+|..+|..+.+.+ .+.+...++..|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~----~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-----~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL----GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-----LAEALFNLGLMYANGR 123 (292)
T ss_pred ccccHHHHHHHHHHhhhc----CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-----cHHHHHhHHHHHhcCC
Confidence 445666677776665431 122444455554443 235667777777665554 34566667777766
Q ss_pred --cCChhhHHHHHHHHHHcCCCCCC-HhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 97 --IGKPELAIGFFENAISLGALKPN-VVSYTSLVIALCMLG-------RVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 97 --~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
..++.+|..+|+++.+.+ .++ ..+...+...|.... +...|...|.++-..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----------------- 184 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLG--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----------------- 184 (292)
T ss_pred CcccCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-----------------
Confidence 447778888888887765 222 223444554444331 122555566555543
Q ss_pred hhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 046930 167 VDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 205 (965)
-+......+...|.. ..++.+|...|....+.|
T Consensus 185 ------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 185 ------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred ------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 133344444444432 235666666666666654
No 300
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=18 Score=40.41 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=39.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHH--HHHHHHHHhcCcHHHHHHHHHHHHh
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTY--NTVIHSLCRQGCFVEAFRLFDSLER 684 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~ 684 (965)
+|+.-...+.-++.-..+++....+.+-+.+. ..|.+..- -.|+-+|+-.| ..+|+.+++-|.+
T Consensus 569 DDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 34555555556666667888887777766655 45555433 33444555554 4678888888876
No 301
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.98 E-value=14 Score=39.15 Aligned_cols=404 Identities=12% Similarity=0.070 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHH
Q 046930 29 KALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFF 107 (965)
Q Consensus 29 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~ 107 (965)
.-..+|+.+.... +.|...|...+.-+-+.+.+.+.-.+|.+++..+ |.++..|..-+.-...-+ +.+.|..+|
T Consensus 89 rIv~lyr~at~rf--~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H---p~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 89 RIVFLYRRATNRF--NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH---PNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 3455677776543 5688899999987777777999999999999998 889999987777555555 499999999
Q ss_pred HHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHH--HHHH---H
Q 046930 108 ENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVS--YTIL---L 182 (965)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l---~ 182 (965)
.+.++.+ |.++..|....+.-.. .+..+..+-...|...+..+ ...-.++.......++... +..- .
T Consensus 164 lrgLR~n--pdsp~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~-~eie~ge~~~~~~~~s~~~~~~~~k~~e~ 235 (568)
T KOG2396|consen 164 LRGLRFN--PDSPKLWKEYFRMELM-----YAEKLRNRREELGLDSSDKD-EEIERGELAWINYANSVDIIKGAVKSVEL 235 (568)
T ss_pred HHHhhcC--CCChHHHHHHHHHHHH-----HHHHHHHHHHHhccccchhH-HHHHHHHHHHHhhccchhhhhcchhhcch
Confidence 9999976 5555566544433211 11111111111111111110 0000000000000011000 0000 0
Q ss_pred HHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHH----HHHh---------------cCChHHHHHHHHHHHHcCCC
Q 046930 183 DGFSKEGTIEKA-VGILNKMIEDRLRPNLITYTAIIF----GFCK---------------KGKLEEAFTVFKKVEDLGLV 242 (965)
Q Consensus 183 ~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---------------~g~~~~A~~~~~~~~~~~~~ 242 (965)
..........+. ..+.+.+...+ +.++.++.-+.. ++.+ .-+-+....+|++..+. .
T Consensus 236 ~~~~~~d~~kel~k~i~d~~~~~~-~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l 312 (568)
T KOG2396|consen 236 SVAEKFDFLKELQKNIIDDLQSKA-PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--L 312 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--h
Confidence 000000111111 11222222222 223333332221 1111 01223344666666543 4
Q ss_pred CCHhHHHHHHHHHHhcC------CHhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCcc-hHHHHH-cCCCCCHHH
Q 046930 243 ADEFVYATLIDGVCRRG------DLDCAFRLLEDMEKK-GIKPS-IVTYNTIINGLCKVGRTS-DAEEVS-KGILGDVVT 312 (965)
Q Consensus 243 ~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~-g~~~~-~~~~~~l~~~~~~~g~~~-~a~~~~-~~~~~~~~~ 312 (965)
++...|+..|..|...- .+.....+++..... +..++ ...|..+...+....... -|..+. +.+..+...
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~ 392 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKM 392 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHH
Confidence 45556666666554322 233444455544432 22222 345555555555444333 333333 344566666
Q ss_pred HHHHHHHhhhc-CChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH--HHHHHchhCCCcccHHH-HHHH
Q 046930 313 YSTLLHGYIEE-DNVNGI-LETKQRLEEAGIQMDIVMCNILIKALFMVGA-LEDAR--ALYQAMPEMNLVANSVT-YSTM 386 (965)
Q Consensus 313 ~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~--~~~~~~~~~~~~~~~~~-~~~l 386 (965)
|..-+...... .+++-. ...+......-..+-...|+... .++ .+... .++..+...+ .|+..+ -+.+
T Consensus 393 ~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~ 466 (568)
T KOG2396|consen 393 WQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKY 466 (568)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHH
Confidence 65555544422 122211 12222222221111222232222 122 11111 1222222222 244433 3456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHC-CCCCCHHhHHHHH
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCK--SGMVDMATEVFIELNEK-GLSLYVGMHKIIL 456 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l 456 (965)
+..+...|-..+|...|..+....|++...+..++..-.. .-+...+..+|+.|... | .|+..+...+
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~ 537 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYM 537 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHH
Confidence 7777788888899999998888888888888877765332 12266677777777653 3 4444443333
No 302
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.68 E-value=1.5 Score=37.57 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh---------------CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC-
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLER---------------IDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK- 720 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 720 (965)
.++.+++.++++.|+.+....+++..=. ..+.|+..+..+++.+|+..|++..|+++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444555555555555555554443211 112344444444444444444444444444444433
Q ss_pred CCCCChhhHHHH
Q 046930 721 GFKPSTRIYNSF 732 (965)
Q Consensus 721 ~~~~~~~~~~~l 732 (965)
+++.+...|..|
T Consensus 83 ~I~i~~~~W~~L 94 (126)
T PF12921_consen 83 PIPIPKEFWRRL 94 (126)
T ss_pred CCCCCHHHHHHH
Confidence 333333444333
No 303
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=20 Score=40.01 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=70.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 046930 664 HSLCRQGCFVEAFRLFDSLERIDMVPS--EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQ 741 (965)
Q Consensus 664 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 741 (965)
-++..-|+-++|-.+.++|.... .|- ..-...+..+|+-.|+.....+++.-.+.. ...|+.-.-..+-.+.-..+
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecC
Confidence 44556677778888888877632 222 111234455677777766666666655543 34455555555555666677
Q ss_pred HHHHHHHHHHhhhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 742 LEEAFKFLHDLKINCLEPDKF--TVSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 742 ~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
.+.....++-+.+. ..|-.. +--.|+-+|...|+ .+|+.+++.|.
T Consensus 587 p~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 587 PEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred hhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 77777776666553 455332 33345555555555 56888888774
No 304
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.63 E-value=6.5 Score=34.77 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 046930 180 ILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRG 259 (965)
Q Consensus 180 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 259 (965)
.++..+.+.+.......+++.+...+. .+...++.++..|++.+ ..+.+..+.. . .+.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 456666667778888888888877764 46667777777777653 3344444432 1 12223334555555556
Q ss_pred CHhHHHHHHHHH
Q 046930 260 DLDCAFRLLEDM 271 (965)
Q Consensus 260 ~~~~A~~~~~~~ 271 (965)
-++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666555544
No 305
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.49 E-value=1.9 Score=36.93 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=56.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 120 VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILN 199 (965)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 199 (965)
..++..++.++++.|+.+....+.++.-..++ +...-..- .-......|+..+..+++.+|+..|++..|+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~~~~~~---~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd 76 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGKKKEGD---YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVD 76 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCccccCc---cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34566777778888888877777765543221 11000000 01123445777777777777777777777777777
Q ss_pred HHHHC-CCCCCHHHHHHHHHHH
Q 046930 200 KMIED-RLRPNLITYTAIIFGF 220 (965)
Q Consensus 200 ~~~~~-~~~~~~~~~~~l~~~~ 220 (965)
...+. +++-+..+|..|+.-.
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH
Confidence 76654 4555566666666543
No 306
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.47 E-value=0.39 Score=50.84 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=84.4
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
...|+.-.|++..|.+.+..++-..+... ......|++.+.+.|..-+|..++.+.+..+ ...+-.+..++++|+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~-~v~~v~la~~~~~~~~~~da~~~l~q~l~~~---~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQ-DVPLVNLANLLIHYGLHLDATKLLLQALAIN---SSEPLTFLSLGNAYLA 688 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhh-cccHHHHHHHHHHhhhhccHHHHHHHHHhhc---ccCchHHHhcchhHHH
Confidence 34565778999999999999886554322 2345678888889999999999999988887 4555678889999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
..+.+.|++.|+++++.. +.++..-+.+..+-|
T Consensus 689 l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HhhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 999999999999999876 666766666665443
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.42 E-value=17 Score=38.57 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP---NLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
....+|..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446678888888999999999999999888754221 234444556677788888999988888776
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.35 E-value=23 Score=40.04 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH-----hcCChhhHHHHHHHHHHc---CCCCCCHhhHHHHHHHHHhcC
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC-----KIGKPELAIGFFENAISL---GALKPNVVSYTSLVIALCMLG 134 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 134 (965)
...|.+.++.+.+.+ +..+...++.+|. ..++.+.|+.+|..+... ......+.+...++.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhc-----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 467888888888776 3344555555544 456899999999999761 101124457778888888754
Q ss_pred -----ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 046930 135 -----RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK---EGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 135 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 206 (965)
+.+.|..+|.+.-..|. |+.... +...+.. ..+...|.++|..+.+.|.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~---------------------~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN---------------------PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC---------------------chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 56779999998887642 444443 3333332 2467899999999998874
Q ss_pred CCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046930 207 RPNLITYTAIIFGFC----KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 207 ~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 277 (965)
..++-.+..+|. ...+...|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+...|.+
T Consensus 360 ---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 360 ---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred ---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 333333333332 2247889999999999988 3332222223333444 7888888777777776544
No 309
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.19 E-value=26 Score=40.29 Aligned_cols=300 Identities=12% Similarity=-0.050 Sum_probs=156.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCH
Q 046930 558 KFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYV 637 (965)
Q Consensus 558 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (965)
.....+...|...+|+..--.+.+-..-..........+...+++..-....+.+....-..++..--.-+.......++
T Consensus 352 ~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~ 431 (894)
T COG2909 352 AAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRL 431 (894)
T ss_pred HHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccCh
Confidence 34445555556666655433222211111111222224555555554444444433222222222223334455667899
Q ss_pred HHHHHHHHHHHhcCCcccH-------HHHHHHHH-HHHhcCcHHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHccC
Q 046930 638 NKALDLCAFAKNKGITVNI-------VTYNTVIH-SLCRQGCFVEAFRLFDSLERI----DMVPSEVSYATLIYNLCKEG 705 (965)
Q Consensus 638 ~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g 705 (965)
++|..+..++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+..+..-.|
T Consensus 432 ~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G 511 (894)
T COG2909 432 AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG 511 (894)
T ss_pred HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc
Confidence 9999999887654222222 13444432 334578899999998887763 22344566777778888899
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhH-----HHHHHHHHhcCCH--HHHHHHHHHhhhC--CCCCC----hhHHHHHHHHHH
Q 046930 706 QLLDAKKLFDRMVLKGFKPSTRIY-----NSFIDGYCKFGQL--EEAFKFLHDLKIN--CLEPD----KFTVSAVINGFC 772 (965)
Q Consensus 706 ~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~--~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~ 772 (965)
++++|..+..+..+..-.-+...+ ..-...+..+|.. .+....|...... .-.|- ..++..+..++.
T Consensus 512 ~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~ 591 (894)
T COG2909 512 ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL 591 (894)
T ss_pred hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 999999888877653112232222 2234556777843 3444444443332 11221 124444555553
Q ss_pred hcCCHHHHHHHHHHhHhCC--CCCCh--HH--HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHH
Q 046930 773 QKGDMEGALGFFLDFNTKG--VSPDF--LG--FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLN 846 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~--~~p~~--~~--~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (965)
+ ++.+..-.....+.+ ..|.. .. +..|+......|++++|...++++..... ..+-++...+...
T Consensus 592 r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~------~~~~~~~~~a~~~ 662 (894)
T COG2909 592 R---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL------NGQYHVDYLAAAY 662 (894)
T ss_pred H---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc------CCCCCchHHHHHH
Confidence 3 344433333322221 22322 22 33688888899999999999988876321 1111222222333
Q ss_pred HHHH--hhhcCcHHHHHHHHHH
Q 046930 847 FLIS--LCEQGSILEAIAILDE 866 (965)
Q Consensus 847 l~~~--~~~~g~~~~A~~~~~~ 866 (965)
.+.. ....|+.++|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3332 2367999988887665
No 310
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.10 E-value=27 Score=40.25 Aligned_cols=201 Identities=12% Similarity=0.128 Sum_probs=120.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--chHHHHHHHHHHH-hcCChhhHHHHHHHHHHcCCCCCCHh
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF--DNFVCSSVVSGFC-KIGKPELAIGFFENAISLGALKPNVV 121 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~ 121 (965)
.....|..++. .|+++++.+.+.. ..|| ...+...++..+. ...+++.|...+++++.... .++..
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~-~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~ 96 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQF-KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLT 96 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchH
Confidence 34455666663 6788888888532 1244 3445778888877 67899999999999976541 23322
Q ss_pred -----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 046930 122 -----SYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL-LDGFSKEGTIEKAV 195 (965)
Q Consensus 122 -----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~ 195 (965)
....+++.+.+.+... |....++.++.- ...+..+-...+..+ +..+...+++..|.
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~----------------~~~~~~~w~~~frll~~~l~~~~~d~~~Al 159 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS----------------ETYGHSAWYYAFRLLKIQLALQHKDYNAAL 159 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH----------------hccCchhHHHHHHHHHHHHHHhcccHHHHH
Confidence 2335566677766666 888888877631 011111222333333 22333347999999
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCC---------CCCHhHHHHHHHHH--HhcC
Q 046930 196 GILNKMIEDR---LRPNLITYTAIIFG--FCKKGKLEEAFTVFKKVEDLGL---------VADEFVYATLIDGV--CRRG 259 (965)
Q Consensus 196 ~~~~~~~~~~---~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g 259 (965)
+.++.+.... ..|-...+-.++.+ ..+.+..+++.+..+++..... .|-..+|..+++.+ ...|
T Consensus 160 ~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~ 239 (608)
T PF10345_consen 160 ENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQG 239 (608)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 9999887642 22233333334333 3355667778887777643211 23455666666554 4578
Q ss_pred CHhHHHHHHHHHHH
Q 046930 260 DLDCAFRLLEDMEK 273 (965)
Q Consensus 260 ~~~~A~~~~~~~~~ 273 (965)
+++.+...++++..
T Consensus 240 ~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 240 DVKNSKQKLKQLQQ 253 (608)
T ss_pred CHHHHHHHHHHHHH
Confidence 87788777766653
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.97 E-value=18 Score=37.93 Aligned_cols=123 Identities=13% Similarity=-0.012 Sum_probs=84.0
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
+..||.-.|-+.+..+++..+-.|+ .......++...|+++.+...+..+...- .....+...+++...+.|+++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~---~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKII---GTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhh---cCCchHHHHHHHhhhchhhHH
Confidence 4678888888888888886643344 44444555778899999888887665443 223356677788888889999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
+|...-+-++... -.++..........-..|-++++.-.++++...++
T Consensus 375 ~a~s~a~~~l~~e--ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 375 EALSTAEMMLSNE--IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHhccc--cCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9998888887654 23344333333334556778888888888876543
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.84 E-value=2 Score=42.47 Aligned_cols=79 Identities=11% Similarity=0.215 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHhHHH
Q 046930 380 SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE-----KGLSLYVGMHKI 454 (965)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 454 (965)
..++..++..+...|+++.+...++++...+|.+...|..++.+|.+.|+...|+..|+++.. .|+.|.......
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346777888899999999999999999999999999999999999999999999999998765 577777666554
Q ss_pred HHHH
Q 046930 455 ILQA 458 (965)
Q Consensus 455 ~l~~ 458 (965)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 313
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.74 E-value=17 Score=37.01 Aligned_cols=131 Identities=14% Similarity=0.214 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh--c----CcHHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHccCC-
Q 046930 637 VNKALDLCAFAKNKGITVNIVTYNTVIHSLCR--Q----GCFVEAFRLFDSLERIDM---VPSEVSYATLIYNLCKEGQ- 706 (965)
Q Consensus 637 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 706 (965)
+++.+.+++.+.+.|..-+..+|-+....... . ....+|.++|+.|.+.-. .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567888999999998887777664433332 2 235679999999988421 2445566666543 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCChhHHHHHHH
Q 046930 707 ---LLDAKKLFDRMVLKGFKPSTRI-YNSFIDGYCKFG---QLEEAFKFLHDLKINCLEPDKFTVSAVIN 769 (965)
Q Consensus 707 ---~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 769 (965)
.+.+..+|+.+.+.|+..+... +.+-+-++...- ....+.++++.+.+.|+++....|..++-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3567788888888787765332 222222222211 14578888999999998888777665543
No 314
>PRK09687 putative lyase; Provisional
Probab=91.44 E-value=17 Score=36.65 Aligned_cols=217 Identities=14% Similarity=0.077 Sum_probs=125.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH----HHHHHHHHHHHhCCCCCCHhhHH
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCF----VEAFRLFDSLERIDMVPSEVSYA 695 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~ 695 (965)
|.......+.++...|. +++...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44455555556666554 3333334444332 2445555556666666653 4567777666443 35555555
Q ss_pred HHHHHHHccCC-----hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHH
Q 046930 696 TLIYNLCKEGQ-----LLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVING 770 (965)
Q Consensus 696 ~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 770 (965)
..+.++...+. ..++.+.+..+.. .++..+-...+.++.+.|+ .+|+..+-.+++ .+|...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 55555554432 1234444444443 3455566666777777776 567777777775 4555555555566
Q ss_pred HHhcC-CHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHH
Q 046930 771 FCQKG-DMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLI 849 (965)
Q Consensus 771 ~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 849 (965)
+...+ ..+.+...+..++. .++......-+.++.+.|. ..|+..+.+.++.+. .....+.
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~---------------~~~~a~~ 243 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT---------------VGDLIIE 243 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc---------------hHHHHHH
Confidence 65543 24567777777652 5566666667777777777 578887777776321 2344556
Q ss_pred HhhhcCcHHHHHHHHHHHhh
Q 046930 850 SLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 850 ~~~~~g~~~~A~~~~~~~~~ 869 (965)
++.+.|.. +|+..+.++..
T Consensus 244 ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHh
Confidence 67777774 78888877654
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.19 E-value=7.5 Score=34.59 Aligned_cols=50 Identities=12% Similarity=-0.097 Sum_probs=22.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
+.++.+++..+++.+.-.. |..++.-..-+..+...|+|++|+.+|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3344444444444444444 3344444444444444444444444444443
No 316
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.14 E-value=21 Score=37.06 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh---cCChhHH
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM---LGRVNEV 139 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A 139 (965)
.+.-+.+|+++++.+ |.+...+...+..+.+.-+.++..+.+++++... +.+...|...+..... .-.++..
T Consensus 47 ~E~klsilerAL~~n---p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKHN---PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHH
Confidence 457788999999997 8899999999999999999999999999999876 6678888877765433 2356677
Q ss_pred HHHHHHHHH
Q 046930 140 NELFVRMES 148 (965)
Q Consensus 140 ~~~~~~~~~ 148 (965)
..+|.+.+.
T Consensus 122 ~~~y~~~l~ 130 (321)
T PF08424_consen 122 RDVYEKCLR 130 (321)
T ss_pred HHHHHHHHH
Confidence 777777664
No 317
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.09 E-value=2.2 Score=33.93 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhH
Q 046930 67 VEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE 138 (965)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (965)
+..++..++.+ |.+..+...++..+...|++++|++.+-.+++.+.-..+...-..++.++...|.-+.
T Consensus 8 ~~al~~~~a~~---P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 8 IAALEAALAAN---PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 34455556666 6777788888888888888888888887777654222233455556666655555443
No 318
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.03 E-value=0.51 Score=49.24 Aligned_cols=93 Identities=13% Similarity=0.036 Sum_probs=69.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
.-+......+.++.|+..|.++++.+ |..+..+...+.++.+.+++..|+.-+.++++.+ |.....|..-+.++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVM 83 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHH
Confidence 34455566777888888888888887 6666777777778888888888888888888765 445567777777777
Q ss_pred hcCChhHHHHHHHHHHHC
Q 046930 132 MLGRVNEVNELFVRMESE 149 (965)
Q Consensus 132 ~~~~~~~A~~~~~~~~~~ 149 (965)
+.+.+.+|...|+.....
T Consensus 84 ~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hHHHHHHHHHHHHHhhhc
Confidence 888888888888777653
No 319
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.98 E-value=11 Score=33.57 Aligned_cols=72 Identities=18% Similarity=0.044 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHHHHchhCCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 046930 356 FMVGALEDARALYQAMPEMNLVANSV-TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGM 429 (965)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (965)
.+.++.+++..++..+.-. .|... .-..-+..++..|+|.+|+.+|+++....+..+.+--.+..++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3456667777776666553 24332 222234446667777777777777665554444444444444444443
No 320
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.97 E-value=17 Score=37.72 Aligned_cols=108 Identities=11% Similarity=0.010 Sum_probs=72.8
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHhcC------------ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh
Q 046930 70 LELMSDENVKYPFDNFVCSSVVSGFCKIG------------KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN 137 (965)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (965)
|++.++.+ |.+..+|..++..--..- -.+.-+.+|+++++.+ |.+...+..++..+.+..+.+
T Consensus 8 l~~~v~~~---P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 8 LNRRVREN---PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHhC---cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHH
Confidence 44444555 666666666665332221 1356678899999886 677788889999999998999
Q ss_pred HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 046930 138 EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK---EGTIEKAVGILNKMIE 203 (965)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 203 (965)
+..+.+++++...+ -+...|...+..... .-.++....+|.+.++
T Consensus 83 ~l~~~we~~l~~~~---------------------~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 83 KLAKKWEELLFKNP---------------------GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHHCC---------------------CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 98999999987532 356777777765443 2346666666666554
No 321
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=6.6 Score=37.17 Aligned_cols=100 Identities=6% Similarity=-0.034 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhC------CCCCC----------HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNH------GTLPS----------SFTFCSLVYSFCSQGNMSRAVEVLELMS 74 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (965)
++.+.=+..+ -+.|++.+|...|++++..- --|.+ ...+..+.+++...|++-++++--..++
T Consensus 179 ~~l~q~GN~l-fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRL-FKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhh-hhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555556666 57788888888888876411 11112 2345566677777788888888888888
Q ss_pred hcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 75 DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
... |.+..+|+..+.+....=+.++|..-|.+++..+
T Consensus 258 ~~~---~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RHH---PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hcC---CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 777 7788888888888887778888888888888754
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=2.1 Score=45.88 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=98.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
..-.|+++.|..++..+. .+....+++.+.++|..++|+++ .+|+.-.. ....+.|++
T Consensus 596 ~vmrrd~~~a~~vLp~I~---------k~~rt~va~Fle~~g~~e~AL~~----------s~D~d~rF---elal~lgrl 653 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP---------KEIRTKVAHFLESQGMKEQALEL----------STDPDQRF---ELALKLGRL 653 (794)
T ss_pred HhhhccccccccccccCc---------hhhhhhHHhHhhhccchHhhhhc----------CCChhhhh---hhhhhcCcH
Confidence 345577777777665543 23455677777777776666543 23332222 224567888
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAI 216 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 216 (965)
+.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|
T Consensus 654 ~iA~~la~e~--------------------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~L 698 (794)
T KOG0276|consen 654 DIAFDLAVEA--------------------------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSL 698 (794)
T ss_pred HHHHHHHHhh--------------------------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhh
Confidence 8888876654 3567788888888888999999888887753 4556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 217 IFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
+-.+...|+.+....+-....+.| ..|. ..-+|...|+++++.+++..-
T Consensus 699 lLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 699 LLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 666777777776666666666655 3232 233566778888888776543
No 323
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.64 E-value=35 Score=39.16 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046930 245 EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKV 293 (965)
Q Consensus 245 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 293 (965)
..+|. +|-.+.+.|++++|.++..+.... .......+...+..|...
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 34554 455667899999999988555433 222344566666666654
No 324
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.20 E-value=41 Score=38.85 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=31.3
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHH--HHHhcCCHHHHHHHHHHc
Q 046930 315 TLLHGYIEEDNVNGILETKQRLEEAGI----QMDIVMCNILIK--ALFMVGALEDARALYQAM 371 (965)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 371 (965)
.|+......|+.++|...++++..... .++-..-...+. .....|+.+.+.....+-
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 455666677777777777776654322 222222222222 234578877777766653
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.18 E-value=0.33 Score=33.70 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.8
Q ss_pred hHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 935 YSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 935 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
|.+.-++++.|+|++|++..+.+|+..|+|
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 455455999999999999999999999997
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.78 E-value=0.58 Score=28.87 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+|..++.+|...|++++|...|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456777777777777777777777777643
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.52 E-value=0.61 Score=28.47 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
++..++.++.+.|++++|++.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455666666666666666666666654
No 328
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.29 E-value=3.2 Score=40.03 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 046930 173 PDTVSYTILLDGFSK-----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV 247 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (965)
.|-.+|...+..+.. .+.++=....+..|.+.|+..|..+|+.|+..+=+.. +.|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-H
Confidence 445555555554432 2344445555555666666666666665555432211 11111 1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046930 248 YATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGR 295 (965)
Q Consensus 248 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 295 (965)
+....-.| -.+-+-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 12345688999999999999999999999998876654
No 329
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.02 E-value=0.32 Score=48.09 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=77.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (965)
-....|.++.|++.|..+++.+ |+....+...+.++++.+++..|+.-++.++..+ +.+..-|-.-..+....|+
T Consensus 123 eAln~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHhcCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhc
Confidence 3457789999999999999999 8899999999999999999999999999999865 3334466666777778999
Q ss_pred hhHHHHHHHHHHHCCC
Q 046930 136 VNEVNELFVRMESEGL 151 (965)
Q Consensus 136 ~~~A~~~~~~~~~~~~ 151 (965)
|++|...+..+.+.+.
T Consensus 198 ~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDY 213 (377)
T ss_pred hHHHHHHHHHHHhccc
Confidence 9999999999988654
No 330
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.91 E-value=2.3 Score=44.37 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=101.6
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--------chHHHHHHHHH
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF--------DNFVCSSVVSG 93 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~~~l~~~ 93 (965)
.+..+...+.+..+.+|...+ .++.....-.+.+...|++++|.+.+-..--... |. ....|+.++.+
T Consensus 217 lq~~~Lk~~krevK~vmn~a~--~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~--~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQ--DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKE--AGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcC--CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccc--cCccccchhhhheeecCcceE
Confidence 344456667777777776654 4555556666778889999999999875422111 22 33457899999
Q ss_pred HHhcCChhhHHHHHHHHHHc------CCCCCC----------HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 94 FCKIGKPELAIGFFENAISL------GALKPN----------VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~------~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
..+.|.|.-+..+|.++++. .|+.|. -...+..+-.|...|+.-.|.++|.+....
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-------- 364 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-------- 364 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH--------
Confidence 99999999999999999851 223332 234456677789999999999999998763
Q ss_pred hhhHHhhhhhhcCCCCCHHHHHHHHHHHHh
Q 046930 158 YSCWICGQMVDKGIKPDTVSYTILLDGFSK 187 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (965)
...++..|..|..+|.-
T Consensus 365 -------------fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 -------------FHRNPRLWLRLAECCIM 381 (696)
T ss_pred -------------HhcCcHHHHHHHHHHHH
Confidence 35789999999998864
No 331
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.86 E-value=18 Score=32.79 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 195 VGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+.+..+.+.+++|+...+..++..+.+.|++... .++...++-+|.......+-.+ .+.+..+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 34445555666777777777777777777765543 3344444455544444333222 23344455555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHcC
Q 046930 275 GIKPSIVTYNTIINGLCKVGRTSDAEEVSKG 305 (965)
Q Consensus 275 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 305 (965)
=...+..++..+...|++-+|.+..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111344555566667777777666543
No 332
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.70 E-value=14 Score=31.39 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 046930 625 STIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM 687 (965)
Q Consensus 625 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 687 (965)
...+..+.+.|+-|.-.+++.++.+. -.+++.....+..+|.+.|+..++-+++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455666777777777777776642 345666677777777777777777777777777664
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.68 E-value=0.59 Score=28.07 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=25.6
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
++.++..|...|++++|+..++++++..|++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 3444444999999999999999999998864
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.08 E-value=6 Score=36.65 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCCCHhhHHHHHHHHHhcCChhHH
Q 046930 62 NMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA--LKPNVVSYTSLVIALCMLGRVNEV 139 (965)
Q Consensus 62 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 139 (965)
.-+.|...|-.+...+. -.+++....++..|. ..+.++|++++-++++... -.+|+..+..++.++.+.|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~--l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPE--LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44678888888776665 567888888887776 6799999999999997642 146788999999999999999988
Q ss_pred HH
Q 046930 140 NE 141 (965)
Q Consensus 140 ~~ 141 (965)
.-
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 64
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.08 E-value=41 Score=36.01 Aligned_cols=199 Identities=11% Similarity=0.129 Sum_probs=130.7
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHH
Q 046930 617 PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYAT 696 (965)
Q Consensus 617 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 696 (965)
.+-|.....+++..+..+..+.-...+-.+|..-| -+-..|..++.+|... ..++-..+|.++.+..+ .|...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34466677788888888888888888888888864 3778889999999887 67888899998888653 33444555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCC---C---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCChhHHHHHHH
Q 046930 697 LIYNLCKEGQLLDAKKLFDRMVLKGFKP---S---TRIYNSFIDGYCKFGQLEEAFKFLHDLKIN-CLEPDKFTVSAVIN 769 (965)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~ 769 (965)
|+..|.+ ++.+.+..+|.+++.. +-| + ...|.-|... -..+.|....+..++.+. |..--.+.+.-+-.
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 6665555 8889999999988864 222 2 2244444321 134667777777777654 22233455555666
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHh
Q 046930 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCT--------------------KGRMEEARSILREMLQ 824 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--------------------~g~~~eA~~~~~~~~~ 824 (965)
-|....++.+|+++...+++.. ..|......++..+.. -.++.++..-|+..+-
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 6778889999999988775532 2233333334444332 3456677777766653
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.31 E-value=1.2 Score=29.09 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 797 LGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 797 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
.++..|+..|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45788999999999999999999998874
No 337
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.25 E-value=0.97 Score=47.25 Aligned_cols=103 Identities=12% Similarity=0.019 Sum_probs=83.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
+..+ ...++|+.|+..|.++++.. +..+..+..-+.++.+.+++..|+.-+..+++.+ |....+|...+.++.+
T Consensus 11 an~~-l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 11 ANEA-LKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMA 84 (476)
T ss_pred Hhhh-cccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHh
Confidence 4444 57789999999999999865 3345556666678999999999999999999999 7888999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+++-+|+..|+...... |+-......+.
T Consensus 85 l~~~~~A~~~l~~~~~l~---Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLA---PNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHHHhhhcC---cCcHHHHHHHH
Confidence 999999999999998854 45444444443
No 338
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=87.12 E-value=5.2 Score=38.66 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=49.3
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD 244 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 244 (965)
.|.+.|++.|..+|+.|++++-+.. +.|. ..+.....-|= .+-+=+++++++|...|+.||
T Consensus 97 ~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPd 157 (406)
T KOG3941|consen 97 YMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPD 157 (406)
T ss_pred HHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCc
Confidence 6777888888888888887664321 1221 11111111121 123447788999999999999
Q ss_pred HhHHHHHHHHHHhcCC
Q 046930 245 EFVYATLIDGVCRRGD 260 (965)
Q Consensus 245 ~~~~~~l~~~~~~~g~ 260 (965)
..+-..|+.+|.+.+-
T Consensus 158 kE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 158 KEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHhccccc
Confidence 9998888888876554
No 339
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.83 E-value=0.41 Score=47.40 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=82.0
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
...|.++.|+..|..++... ++....+..-..++.+.+++..|++-++.++..+ |....-|-..+.+..-.|+++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein---~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN---PDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccC---cccccccchhhHHHHHhhchH
Confidence 47899999999999998765 5677778888889999999999999999999999 777788888888889999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhH
Q 046930 102 LAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+|...|..+.+.+ +.+....|
T Consensus 200 ~aa~dl~~a~kld-~dE~~~a~ 220 (377)
T KOG1308|consen 200 EAAHDLALACKLD-YDEANSAT 220 (377)
T ss_pred HHHHHHHHHHhcc-ccHHHHHH
Confidence 9999999999876 44444444
No 340
>PRK10941 hypothetical protein; Provisional
Probab=86.57 E-value=7.4 Score=38.68 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
...+-.+|.+.++++.|+.+.+.++... |.++.-+...|-+|.+.|.+..|..-++..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3444555666667777777777666666 5666666666666667777776666666666554
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.16 E-value=1.5 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
.+++.++..|...|++++|+.++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777764
No 342
>PRK09687 putative lyase; Provisional
Probab=86.10 E-value=41 Score=34.00 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=7.3
Q ss_pred CHhHHHHHHHHHHhcCC
Q 046930 244 DEFVYATLIDGVCRRGD 260 (965)
Q Consensus 244 ~~~~~~~l~~~~~~~g~ 260 (965)
+..+....+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33344444444444444
No 343
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.96 E-value=7.6 Score=37.19 Aligned_cols=102 Identities=17% Similarity=0.014 Sum_probs=55.0
Q ss_pred hcCCHHHHHHHHHHhHh----CCCCCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc-ccccHH
Q 046930 773 QKGDMEGALGFFLDFNT----KGVSPDFL--GFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV-ESESVL 845 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~----~~~~p~~~--~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 845 (965)
....+++|++.|.-++- .+-.|... .+..+++.|...|+.+....+++++++.....-..+..+..+ +...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34455666665554321 23344432 266788888888885555555554444322111111111112 222333
Q ss_pred HHHH-HhhhcCcHHHHHHHHHHHhhccCCC
Q 046930 846 NFLI-SLCEQGSILEAIAILDEIGYMLFPT 874 (965)
Q Consensus 846 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~ 874 (965)
-|++ ...+.|++++|.+.+.++...+...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3444 4668999999999999987664433
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.87 E-value=69 Score=36.43 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=44.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
+.+.+.+++|+..-+.....-+.+ .-...+...+.-+...|++++|-...-++. ..+...|......+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-----gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKML-----GNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCcccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHh-----cchHHHHHHHHHHhcccccc
Confidence 445667777776665443322100 134456666777777777777777777765 24555666666656555554
Q ss_pred hH
Q 046930 137 NE 138 (965)
Q Consensus 137 ~~ 138 (965)
..
T Consensus 440 ~~ 441 (846)
T KOG2066|consen 440 TD 441 (846)
T ss_pred ch
Confidence 43
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.68 E-value=76 Score=36.68 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhCCCCCC--HHhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCC---chHHHHHHHHHHHhcCChhhH
Q 046930 30 ALLVLKDCLRNHGTLPS--SFTFCSLVYSFC-SQGNMSRAVEVLELMSDENVKYPF---DNFVCSSVVSGFCKIGKPELA 103 (965)
Q Consensus 30 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 103 (965)
|++.++-+++....+|. ..+...++.++. ...+++.|+..+++.+.....+.- ...+-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 56777777765555553 345777888876 678999999999998776532011 1234456778888888777 9
Q ss_pred HHHHHHHHHcCC-CCCCHhhHH-HHH--HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHH
Q 046930 104 IGFFENAISLGA-LKPNVVSYT-SLV--IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYT 179 (965)
Q Consensus 104 ~~~~~~~~~~~~-~~~~~~~~~-~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 179 (965)
....++.++.-. .+.+...|. .++ ..+...+++..|.+.++.+....- ....|-..++.
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~-----------------~~~d~~~~v~~ 181 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN-----------------QRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-----------------hcCCHHHHHHH
Confidence 999999886431 112222222 223 222234799999999998876421 11123344444
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHHCC--C-------CCCHHHHHHHHHH--HHhcCChHHHHHHHHHHH
Q 046930 180 ILLDGF--SKEGTIEKAVGILNKMIEDR--L-------RPNLITYTAIIFG--FCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 180 ~l~~~~--~~~g~~~~A~~~~~~~~~~~--~-------~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 237 (965)
.++.+. .+.+..+++.+..+++.... + .|-..+|..++.. +...|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444443 34566777777777764321 1 2345566666554 456677777777666653
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.38 E-value=54 Score=34.70 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046930 394 GRIEEALEIFDELRRMSISSVACYNCIINGLC 425 (965)
Q Consensus 394 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (965)
+..+++...|.++.+..+....+|..++..+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 67778888888888877777777777766654
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.36 E-value=25 Score=30.85 Aligned_cols=51 Identities=20% Similarity=0.035 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 393 LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
.++.+++..+++.+.-..|.....-..-+..+...|++++|+.+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444445555554444444444443333444444455555555555554443
No 348
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.80 E-value=27 Score=30.69 Aligned_cols=50 Identities=14% Similarity=-0.024 Sum_probs=20.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.++++++..+++.+.-.. |.....-..-+..+...|+|++|+.+|+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 444444444444444432 12222222223334444555555555544443
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.36 E-value=38 Score=32.19 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=17.2
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhc
Q 046930 491 ISFLCKRGSSEVASELYMFMRKR 513 (965)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~~~ 513 (965)
...-...+++.+|+.+|+++...
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678899999999987664
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.20 E-value=12 Score=34.77 Aligned_cols=74 Identities=20% Similarity=0.121 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHHH
Q 046930 672 FVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK---GFKPSTRIYNSFIDGYCKFGQLEEAF 746 (965)
Q Consensus 672 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 746 (965)
-++|...|-++...+.--++.....|+..|. ..+.+++++++.++++. +-.+|+..+.+|+.++.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3566666666666554445555555555444 55667777777777653 22556777777777777777777664
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.10 E-value=2.4 Score=29.52 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 799 FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 799 ~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
++.++.++.+.|++++|..+.+.+++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55688999999999999999999999
No 352
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.99 E-value=10 Score=35.99 Aligned_cols=99 Identities=9% Similarity=-0.063 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh-------cCCCCCCch----------HHHHHHHHHHHhcCChhhHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSD-------ENVKYPFDN----------FVCSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
.+...-++-+.+.|++.+|...|..++. +.. |.++ ..+.....+++..|+|-++++.-..+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEk--P~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEK--PGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccC--CCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3556667778889999998888876543 121 3333 34566778899999999999999999
Q ss_pred HHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 111 ISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+... |.|+.+|..-+.+.+..-+.++|..-|.++++..
T Consensus 257 L~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 257 LRHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 9877 8889999999999999999999999999999853
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.73 E-value=1.6e+02 Score=38.75 Aligned_cols=123 Identities=7% Similarity=-0.041 Sum_probs=82.1
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHH
Q 046930 315 TLLHGYIEEDNVNGILETKQRLEEAGIQ--MDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCK 392 (965)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (965)
.+..+-.+.+.+.+|+..++.-.....+ .....+..+...|...++++...-+...... .|+ +...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 3444556777788888887774111111 1123444455588888888887777664111 122 2234445678
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 393 LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
.|++..|...|+.+.+.+|+....++.++......|.++..+...+-....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~ 1512 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN 1512 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc
Confidence 899999999999999998888888888888888888888888766665543
No 354
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.62 E-value=9.2 Score=36.63 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHhHhCCCCC----C-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 763 TVSAVINGFCQKGD-------MEGALGFFLDFNTKGVSP----D-FLGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 763 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
.+..+++.|...|+ ...|++.|++..+.+-.| + ....+.++....+.|+.++|...|.+++..+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 44455666655555 345666666665543332 2 23366688888899999999999999998544
No 355
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=83.43 E-value=57 Score=33.40 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC------
Q 046930 636 YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCR----QGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEG------ 705 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 705 (965)
+..+|...|..+.+.|. ......|+..|.. ..+..+|..+|.++.+.|..+...+...+...|..-+
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 45666666665555542 2333334444443 3366666666666666553222222333333333221
Q ss_pred -ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHhhhCC
Q 046930 706 -QLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKF----GQLEEAFKFLHDLKINC 756 (965)
Q Consensus 706 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 756 (965)
+...|...|.++...+ +......++..|..- .+..+|...|++..+.|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 2224666666655544 333444444444331 25566666666666543
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.95 E-value=78 Score=34.64 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
-.++.+...|+.-+|++.+|...+..++--.+..........++.++.+.|...+|.-++-.+...- |.-..-+..+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA---~~~t~n~y~l 289 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA---DFFTSNYYTL 289 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC---ccccccceeH
Confidence 3667777888778888888888888877644332334456777888888888888888887666654 3333446778
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
++++...|.+......|+.+.+.+
T Consensus 290 ~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 290 GNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred HHHHHHHhhhhhhhhhhhhhhccC
Confidence 888888888888888888777654
No 357
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.82 E-value=14 Score=31.47 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHhcC---CHHHHHHHHHHhHhCCCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 758 EPDKFTVSAVINGFCQKG---DMEGALGFFLDFNTKGVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 758 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+...+--++.+++.+.. +..+.+.+++++... -.|+. .-.+.|+.++++.|++++++.+.+.+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 444555556777776554 455678888887642 23432 2255588888888888888888888887
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.47 E-value=1.8 Score=24.78 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFF 107 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~ 107 (965)
...++.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555555444
No 359
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.22 E-value=18 Score=39.34 Aligned_cols=46 Identities=28% Similarity=0.192 Sum_probs=24.7
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 046930 667 CRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMV 718 (965)
Q Consensus 667 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (965)
.+.|+++.|.++..+. .+..-|..|.++..+.|++..|.++|.+..
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3455555555554433 224455566666666666666666655543
No 360
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.21 E-value=1.9 Score=27.05 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=22.5
Q ss_pred hhHHHHhhhccchHHHHHHH--HHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKL--MKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~--~~~~~~~~~~~ 964 (965)
.+.+...++.+|++++|+.. |+-+....|+|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 34454559999999999999 65887777765
No 361
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.93 E-value=1.8e+02 Score=38.21 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=95.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNV--VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
.++.+-.+++.|..|+..+++-.... .+.+. ..+..+...|...+++|...-+...-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e-k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~------------------- 1447 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE-KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF------------------- 1447 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-------------------
Confidence 56677788888999999888842111 11222 233444458888888888777765421
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 046930 167 VDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF 246 (965)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (965)
.+...+. .|-.....|++..|...|+.+.+.++. ...+++-++......|.+...+-..+-..... .+...
T Consensus 1448 ------a~~sl~~-qil~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~ 1518 (2382)
T KOG0890|consen 1448 ------ADPSLYQ-QILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVD 1518 (2382)
T ss_pred ------cCccHHH-HHHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHH
Confidence 1222222 333455678999999999999887533 46677777777777788887777666555432 33444
Q ss_pred HHHHH-HHHHHhcCCHhHHHHHHH
Q 046930 247 VYATL-IDGVCRRGDLDCAFRLLE 269 (965)
Q Consensus 247 ~~~~l-~~~~~~~g~~~~A~~~~~ 269 (965)
.++++ +.+-.+.++++.....+.
T Consensus 1519 ~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1519 ELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhhcchhhhhhhhh
Confidence 44444 344567788887777665
No 362
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.86 E-value=1.3e+02 Score=36.38 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--hHHHHHHHH
Q 046930 382 TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG--MHKIILQAT 459 (965)
Q Consensus 382 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~ 459 (965)
.+...+.-+...+.+++|.-.|+..-+ ...-+.+|...|+|.+|+.+..++.. .-+.. +...+...+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 344444445556667777666665433 23345666677777777777776642 11111 124455555
Q ss_pred HHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHH
Q 046930 460 FAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMF 509 (965)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (965)
...+..-+|-+++.....- ....+..|++...+++|..+-..
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 5555555555554443221 12233445666666666655543
No 363
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=81.28 E-value=25 Score=29.25 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=35.9
Q ss_pred hHHHHHHHH-HHccCCchHHHHHHHHHHHhCCCCCC----------HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 12 FFDSLIQGF-CIKRNDPEKALLVLKDCLRNHGTLPS----------SFTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 12 ~~~~l~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
+|..|..+= -.+.|-|++|...++++|.-+.-.|. ...+..|..++...|+|++++..-+..
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455555432 13668899999999999976543332 334555666666666666655544443
No 364
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.90 E-value=11 Score=29.85 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=32.7
Q ss_pred HHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046930 362 EDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM 409 (965)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (965)
-++.+-+..+...++.|++.+...-+++|-+.+++..|+++|+.+...
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344555555666666777777777777777777777777777766644
No 365
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.75 E-value=87 Score=33.71 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFG-FCKKGKLEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 172 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
..|+..|...+.-+.+.+.+.+...+|.+|+...+. ++..|.....- |...-+.+.|..+|....+.+ +.++..|.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWK 178 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHH
Confidence 358899999998888888899999999999886543 45555433333 333334888999998888775 33444443
No 366
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.75 E-value=10 Score=37.94 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVK-YPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
|.--++-|.+..+|..|+..|...++.... ...+...|+..+.+-...|+|..|+.-..+++..+ |....++..-..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--PTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhhhhhhH
Confidence 344455567777777777777776665421 12345566777777777777777777777777755 445556666666
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 046930 129 ALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~ 147 (965)
++....++++|..+.+...
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 6667777666666555443
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.62 E-value=14 Score=31.59 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHhcC---CCHHHHHHHHHHHHhcCcchhhhhcccccc--ccccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 793 SPDFLGFLYLVKGLCTK---GRMEEARSILREMLQSKSVLELINRVDIEV--ESESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 793 ~p~~~~~~~l~~~~~~~---g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
.+...+-.++++++.+. .+..+.+.+++.+++. .+| ..+.++-|.-++.+.|+|++++.+.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-----------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-----------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-----------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 77778878899999864 4677889999999862 233 4457777888899999999999999987
Q ss_pred hhcc
Q 046930 868 GYML 871 (965)
Q Consensus 868 ~~~~ 871 (965)
....
T Consensus 98 l~~e 101 (149)
T KOG3364|consen 98 LETE 101 (149)
T ss_pred HhhC
Confidence 6553
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.31 E-value=2.6 Score=24.10 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 046930 799 FLYLVKGLCTKGRMEEARSILR 820 (965)
Q Consensus 799 ~~~l~~~~~~~g~~~eA~~~~~ 820 (965)
...++.++...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456777777777777777664
No 369
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.77 E-value=43 Score=32.86 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=47.6
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh-hHH
Q 046930 691 EVSYATLIYNLCKEGQLLDAKKLFDRMVL----KGFKPSTRI-YNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK-FTV 764 (965)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 764 (965)
...+..+...|++-++.+.+.++..+..+ .|.+-|+.. -..|+-.|....-+++-++..+.|.+.|..-+. .-|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44556666666666666666666555443 244444332 223344444444456666666666665533321 111
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHh
Q 046930 765 SAVINGF-CQKGDMEGALGFFLDF 787 (965)
Q Consensus 765 ~~l~~~~-~~~g~~~~A~~~~~~~ 787 (965)
-..-..+ ....++.+|-.++...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1111111 2344566666655554
No 370
>PRK10941 hypothetical protein; Provisional
Probab=79.49 E-value=12 Score=37.21 Aligned_cols=77 Identities=14% Similarity=-0.044 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccc
Q 046930 764 VSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESE 842 (965)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (965)
.++|-.+|.+.++++.|+.+.+.++. +.|+... +.-.+-.|.+.|.+..|..-++.-++..+ ..|+.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P---------~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP---------EDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC---------CchhHH
Confidence 45677788899999999999999966 7787665 77788889999999999999998887544 445555
Q ss_pred cHHHHHHHh
Q 046930 843 SVLNFLISL 851 (965)
Q Consensus 843 ~~~~l~~~~ 851 (965)
.+...+..+
T Consensus 253 ~ik~ql~~l 261 (269)
T PRK10941 253 MIRAQIHSI 261 (269)
T ss_pred HHHHHHHHH
Confidence 555554444
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.87 E-value=3.5 Score=24.33 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
++..++..+...|++++|...|+++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556666666666666666666666553
No 372
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.71 E-value=98 Score=33.12 Aligned_cols=96 Identities=11% Similarity=-0.053 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH-----HhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCC-Cch
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS-----FTFCSLVYSFCSQG-NMSRAVEVLELMSDENVKYP-FDN 84 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~-~~~ 84 (965)
....|+.-+..-..+++.|...++++.......|+. .++..++..|.... .+..+...+.++++.....| -..
T Consensus 48 t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsc 127 (629)
T KOG2300|consen 48 THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSC 127 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhH
Confidence 444455544455566677776666665544333333 23455555555544 66666677776666542112 123
Q ss_pred HHHHHHHHHHHhcCChhhHHHHH
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFF 107 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~ 107 (965)
...+.+++...-..++..|.+.+
T Consensus 128 kllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHH
Confidence 34455666666666777776663
No 373
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.67 E-value=9.1 Score=30.90 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
.++..++......|++++|+..++++++.
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44556666777777888888777777754
No 374
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=78.49 E-value=1.6e+02 Score=35.51 Aligned_cols=58 Identities=9% Similarity=-0.082 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 384 STMIDGYCKLGRIEEALEIFDELRRM--SISSVACYNCIINGLCKSGMVDMATEVFIELN 441 (965)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (965)
...+.+|.-..++++|-+++...... ......++...+.-+.-.++-+.|...|....
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 808 VYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 34455666667777777776544333 22233444444444445555555665555544
No 375
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.31 E-value=1.4e+02 Score=34.60 Aligned_cols=50 Identities=8% Similarity=-0.129 Sum_probs=30.8
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHD 751 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 751 (965)
..+...|+...|...+..+... .+......++....+.|..+-++.....
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 3355667777777777776653 2344455666666667777766665543
No 376
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.91 E-value=34 Score=27.32 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHH
Q 046930 31 LLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFE 108 (965)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 108 (965)
+..++..+..+ |.|......++..+...|++++|++.+-.+++.+..+ .+..+-..++.++.-.|.-+....-|+
T Consensus 8 ~~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-EDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-CCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-cccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 34456667665 5677888899999999999999999999999988532 344556666666666665444444433
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.59 E-value=2.9 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=23.2
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcc
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSS 960 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~ 960 (965)
.+++..+|...|+.+.|.+.++++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 356767799999999999999999953
No 378
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.40 E-value=1.1e+02 Score=33.00 Aligned_cols=186 Identities=9% Similarity=0.051 Sum_probs=116.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.+......++..+....++.-...+..+++..+ .+..++..++.+|..+ ..+.-..+++++.+.+ -+....
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---fnDvv~ 134 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---FNDVVI 134 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---chhHHH
Confidence 4456667778888888888888888888888875 3557788888888877 6677778888777754 333334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..-+..+...++-..+...|.++..+-+. +.....--..|.-|...- ..+.+..+++..++..
T Consensus 135 ~ReLa~~yEkik~sk~a~~f~Ka~yrfI~---------------~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt 197 (711)
T COG1747 135 GRELADKYEKIKKSKAAEFFGKALYRFIP---------------RRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQT 197 (711)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHhcc---------------hhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 43333344458888888888887754210 111111133555555322 3456666666666554
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 046930 204 D-RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGV 255 (965)
Q Consensus 204 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (965)
. |...-...+.-+-.-|....++.+|++++..+.+.. ..|......++..+
T Consensus 198 ~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 198 KLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 3 222233444445556777778888888888877765 44555666666544
No 379
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.09 E-value=18 Score=29.17 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=38.4
Q ss_pred HHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046930 363 DARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCII 421 (965)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (965)
+..+-+..+...++.|++.+....+.+|-+.+++..|+++|+.+..........|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 55566666677778888888888888888888888888888888766333222444443
No 380
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.03 E-value=76 Score=30.94 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=94.5
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
..++...+...-..|+++..+++...+..-+.-.|...+--.. ..+..+=.+.++.+++.+ |.+-.+|...-....
T Consensus 48 YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~n---pKNYQvWHHRr~ive 123 (318)
T KOG0530|consen 48 YFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDN---PKNYQVWHHRRVIVE 123 (318)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhC---ccchhHHHHHHHHHH
Confidence 3445545677778899999999886643333333333331111 235777788888888888 889999988888888
Q ss_pred hcCChh-hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 96 KIGKPE-LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 96 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
..|++. .-+++...|+..+ ..+-++|..---++...+.++.-+....++++.++
T Consensus 124 ~l~d~s~rELef~~~~l~~D--aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 124 LLGDPSFRELEFTKLMLDDD--AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HhcCcccchHHHHHHHHhcc--ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 888888 7788888898866 66777887777777777889998998888887654
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.44 E-value=7.5 Score=29.51 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=22.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHH
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGF 106 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 106 (965)
.+++.++|+..+..+++.....+..-.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554432232333344444455555555554443
No 382
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.22 E-value=91 Score=31.44 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=27.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHhhhCC
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVL----KGFKPSTRIYN-SFIDGYCKFGQLEEAFKFLHDLKINC 756 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~ 756 (965)
.+.....-|++-|+.+.|.+.+.+..+ .|.+-|+..+. .++-.|....-+.+-++-.+.+.+.|
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 344444555555555555555544332 24444433222 22233333333444444444444443
No 383
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.48 E-value=17 Score=35.98 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=67.9
Q ss_pred CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 046930 685 IDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTR-----IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP 759 (965)
Q Consensus 685 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 759 (965)
.|......+...++..-....+++.+..++-++... |+.. +-.+.+..+ ..=+.++++..+..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhcccc
Confidence 354455666666776666667788888887777653 3211 112223322 2335667777777777778888
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 046930 760 DKFTVSAVINGFCQKGDMEGALGFFLDFNTKG 791 (965)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (965)
|..+.+.+++.+.+.+++.+|..+...|+..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888888777776543
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.87 E-value=86 Score=30.48 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=88.3
Q ss_pred cCChhhHHHHHHHHHHcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 97 IGKPELAIGFFENAISLGALKPN--VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
...+++|+.-|+++++..|-..+ ..+.-.++.++.+.+++++....|.+++.. |.+.+- -.-+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY------------IkSAVT---rNyS 104 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY------------IKSAVT---RNYS 104 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH------------HHHHHh---cccc
Confidence 34667777777777765422211 124445666777777777777777766531 110000 0123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CC--
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIED-----RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL----VA-- 243 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-- 243 (965)
..+.|.++.......+.+-..++|+.-++. +-+.-..|-..|...|...+.+.+..++++++...-- ..
T Consensus 105 EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~ 184 (440)
T KOG1464|consen 105 EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ 184 (440)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhh
Confidence 445556665555555555444444433321 1111112234567778888888888888888764311 11
Q ss_pred -----CHhHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046930 244 -----DEFVYATLIDGVCRRGDLDCAFRLLEDMEK 273 (965)
Q Consensus 244 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 273 (965)
-..+|..-|+.|....+-..-..++++.+.
T Consensus 185 kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 185 KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 134666667777777766666677776653
No 385
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=74.69 E-value=67 Score=29.19 Aligned_cols=101 Identities=22% Similarity=0.290 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 046930 642 DLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKG 721 (965)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (965)
+..+.+.+.+++|+...+..++..+.+.|++..-. .++..++-+|.......+ +.-.+.+..+.++--+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQL--LSLGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHH--HHhHccChHHHHHHHHHHHH-
Confidence 44555566777788888888888888888755443 344445555654444433 22223445555555555542
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 722 FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDL 752 (965)
Q Consensus 722 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 752 (965)
.. ..+..++.++...|++-+|+.+.++.
T Consensus 88 L~---~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LG---TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hh---hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 00 13345566777788888888877665
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.61 E-value=21 Score=28.74 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=37.4
Q ss_pred HhcCCHHHHHHHHHHhHhC---CCCCC-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 772 CQKGDMEGALGFFLDFNTK---GVSPD-----FLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~---~~~p~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+.|++.+|++.+.+..+. ...+. ......++..+...|++++|+..++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3778888887776666442 11222 22355677888899999999999999887
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.59 E-value=20 Score=35.17 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.+..++..|..+|.+.+|.++.++++..+ |-+...+..+++.++..|+--.|.+-|+++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45667788999999999999999999987 67777888999999999998888887777654
No 388
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=74.38 E-value=50 Score=27.58 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=62.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC---------chHHHHHHHHHHHhcCChhhHHHHHHHHHH----cCCCCCCH
Q 046930 54 VYSFCSQGNMSRAVEVLELMSDENVKYPF---------DNFVCSSVVSGFCKIGKPELAIGFFENAIS----LGALKPNV 120 (965)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 120 (965)
+.--.+.|-+++|...+.++.+...+.|+ +..++..+..++...|+|++++..-++++. .+.+..|.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 33445678888888888887765443344 456778899999999999998877776663 22233342
Q ss_pred -hhHH----HHHHHHHhcCChhHHHHHHHHHHH
Q 046930 121 -VSYT----SLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 121 -~~~~----~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
..|. .-..++-..|+.++|...|+..-+
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3444 344567789999999999887653
No 389
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.67 E-value=21 Score=35.41 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=74.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR---LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADE 245 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 245 (965)
.|....+.+-..++..-....+.+.+...+-++.... ..|+. +-.+.++.+.+ -++++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3444555555666655566778899988888876531 11221 12233343333 4678999999888899999999
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 246 FVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 246 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+.+.+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999988887754
No 390
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.79 E-value=2.1e+02 Score=34.04 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHhHHHH--
Q 046930 178 YTILLDGFSKEGTIEKAVGILNKMIEDR---LRPNLITYTAIIFGFCKKGKL--EEAFTVFKKVEDLGLVADEFVYAT-- 250 (965)
Q Consensus 178 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~-- 250 (965)
|..|+..|...|..++|+++|.+..... ...-...+..++.-+.+.+.. +-..+.-....+........++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6778888888888888888888887631 000112233344444444443 444444444433321111011111
Q ss_pred ----------HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 251 ----------LIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 251 ----------l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 292 (965)
.+-.|......+-+..+++.+....-.++....+.++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122344556667777777777665444556666666666653
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.03 E-value=24 Score=33.01 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=24.5
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (965)
.+.++..+|+...+.-++.. |.+...-..+.+.++-.|+|++|..-++..-+..
T Consensus 12 L~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred HHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 34444455555444444432 2333334444444555555555555554444443
No 392
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=71.34 E-value=37 Score=27.14 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 190 TIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
+.-++.+.++.+...+..|++....+.++++.+.+++..|.++|+.+..+- ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455666667777766777777777777788888888888888877666332 22334555444
No 393
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.24 E-value=2.1e+02 Score=33.02 Aligned_cols=62 Identities=6% Similarity=0.009 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC-------hhHHHHHHHHHHHCC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR-------VNEVNELFVRMESEG 150 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~ 150 (965)
...++-.+.|+|++++|.++....... +......+...+..|....+ -++...-|.+..+..
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 446777778888888888888444332 23444556666666655422 224445566555443
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.99 E-value=12 Score=28.38 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=32.9
Q ss_pred hcCCHHHHHHHHHHhHhCCCCC-Ch-HHHHHHHHHHhcCCCHHHHHHHHHH
Q 046930 773 QKGDMEGALGFFLDFNTKGVSP-DF-LGFLYLVKGLCTKGRMEEARSILRE 821 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~eA~~~~~~ 821 (965)
...+.++|+..+++.++.-..| +. .++..|+.+|+..|++.+.+++.-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888876543333 22 2367777788888888887776543
No 395
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.79 E-value=1.6e+02 Score=30.80 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=62.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--------CCCC
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG--------ALKP 118 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~ 118 (965)
...+.-++..|...|+++.|++.|.++.+--........+|..++..-.-.|+|.....+-.++.+.. .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 34677788888889999999999998665432113344567777777777888888777777776531 0122
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 119 NVVSYTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
....+..+ +....+++..|...|-...
T Consensus 230 kl~C~agL--a~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGL--ANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHH--HHHHHHHHHHHHHHHHhCC
Confidence 22223233 3344557777777665443
No 396
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=67.43 E-value=50 Score=27.33 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=14.6
Q ss_pred HccCCchHHHHHHHHHHHhCCC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGT 43 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~ 43 (965)
..+|+.-+|+++.++.+..+|-
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~ 28 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGE 28 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccC
Confidence 4667777777777776665553
No 397
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.33 E-value=37 Score=31.91 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 55 YSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
..+.+.+...+|+...+.-++.+ |.+...-..+...++-.|+|++|...++-+-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkak---Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK---PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC---CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34444445555555444444444 44444444444445555555555444444433
No 398
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.07 E-value=23 Score=34.74 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
+...++.|...|.+.+|.++.+.+++.+ |.+...+..++..+...|+--+|...|+++-+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld---pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD---PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3456678899999999999999999999 88999999999999999998888888877654
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.05 E-value=37 Score=33.21 Aligned_cols=51 Identities=16% Similarity=0.031 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHH----Hh-hhcCcHHHHHHHHHHHhh
Q 046930 812 MEEARSILREMLQSKSVLELINRVDIEVESESVLNFLI----SL-CEQGSILEAIAILDEIGY 869 (965)
Q Consensus 812 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~-~~~g~~~~A~~~~~~~~~ 869 (965)
.+.|.+.|+++.+.-.. .+.|.......|+- -+ -..|+.++|+++.++...
T Consensus 142 ~~~a~~aY~~A~~~a~~-------~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKK-------ELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHH-------HSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhc-------ccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46788888887763221 02343333322222 22 347999999999887543
No 400
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.38 E-value=36 Score=34.30 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=36.4
Q ss_pred cCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
..+|..|...|...+......|+ ...|..-+.+-...|++..|+.-...++..+ |....++..-+.++....+++
T Consensus 94 ~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 94 EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---PTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---cchhhhhhhhhHHHHHHHHHH
Confidence 33444444444444443322222 2234444444444444444444444444444 444444444444444444444
Q ss_pred hHHHHHHHH
Q 046930 102 LAIGFFENA 110 (965)
Q Consensus 102 ~A~~~~~~~ 110 (965)
+|..+.+..
T Consensus 171 ~a~nw~ee~ 179 (390)
T KOG0551|consen 171 EAVNWCEEG 179 (390)
T ss_pred HHHHHHhhh
Confidence 444444443
No 401
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=66.06 E-value=55 Score=27.10 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=56.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh-----------cCChhhHHHHHHHHHHcCCCCCCHhh
Q 046930 54 VYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK-----------IGKPELAIGFFENAISLGALKPNVVS 122 (965)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~~~~~~~~~~~~~~ 122 (965)
+..+.+.|+.-+|+++.+.++..+............-|.++.+ ..-.-.+++.|.+..... |.....
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls--p~~A~~ 80 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS--PDSAHS 80 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC--hhHHHH
Confidence 4557788999999999999888764322222344444444422 233456788888888754 444455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 123 YTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 123 ~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
...++.-+.....++++..--++.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 6666655555556666666555543
No 402
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.04 E-value=2.3 Score=37.83 Aligned_cols=84 Identities=7% Similarity=0.093 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 046930 627 IVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQ 706 (965)
Q Consensus 627 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 706 (965)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 35555566777777777777776654556667777777777776666666666521 11222344455566666
Q ss_pred hHHHHHHHHHH
Q 046930 707 LLDAKKLFDRM 717 (965)
Q Consensus 707 ~~~A~~~~~~~ 717 (965)
+++|.-+|.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 403
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.04 E-value=14 Score=24.49 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 251 LIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 251 l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666665543
No 404
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=65.52 E-value=3.1 Score=37.02 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=17.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 046930 703 KEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFK 747 (965)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 747 (965)
+.+.+.....+++.+...+...+....+.++..|++.++.++..+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~ 63 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE 63 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 334444444444444433222233344444444444433333333
No 405
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.37 E-value=3.9 Score=38.24 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=48.4
Q ss_pred ccccCcccccccccccchhcccCCCchhhhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 906 NQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 906 ~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
..+.++.+.+.+.|.++++.. |.+...+..++..-.+.|+.+.|.+-|++.++..|+|
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445677778888999999988 7777777777555788899999999999999999987
No 406
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=64.83 E-value=75 Score=25.82 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046930 191 IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLID 253 (965)
Q Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 253 (965)
.-+..+-++.+...+..|++....+.++++.+.+++..|.++|+.+..+- .+....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 34566666676666777777777777777777778888877777776442 222225555443
No 407
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=63.88 E-value=26 Score=34.58 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=48.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 54 VYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.-..+.|+.++|..+|+.++... |.++.++..++...-..++.-+|-++|-+++..+ |.+..+.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlala---P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis--P~nseAL 187 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALA---PTNPQILIEMGQFREMHNEIVEADQCYVKALTIS--PGNSEAL 187 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcC---CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC--CCchHHH
Confidence 334456788888888888888887 7788888888887777788888888888887755 4454443
No 408
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.68 E-value=2.2e+02 Score=30.74 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCCch--HHHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCCCCH---
Q 046930 49 TFCSLVYSFCSQG--NMSRAVEVLELMSDENVKYPFDN--FVCSSVVSG-FCKIGKPELAIGFFENAISLGALKPNV--- 120 (965)
Q Consensus 49 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 120 (965)
...+++..+...| +...++++++......+ |... .+...++.. +....+++.|...++++......-|+.
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~i--s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQI--SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 3445666666666 77788888887777664 3333 334455554 345678888888888877543222333
Q ss_pred --hhHHHHHHHHHhcC-ChhHHHHHHHHHHHC
Q 046930 121 --VSYTSLVIALCMLG-RVNEVNELFVRMESE 149 (965)
Q Consensus 121 --~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 149 (965)
.++..+...|.... .+..|..++++.++.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaiel 118 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIEL 118 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 25556666676665 777888888887764
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.58 E-value=17 Score=34.23 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
...+.++.+.|.+.|.+++..- |.....|..++..-.+.|+++.|.+.|++.++.+
T Consensus 4 ~~~~~~D~~aaaely~qal~la---p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA---PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC---chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456677777888888877776 6666777888887788888888888888887765
No 410
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.37 E-value=73 Score=25.72 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=20.7
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
+.+.|++++|..+.+.+ ..||...|..|.. .+.|..+++..-+.++-
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 44455555555444433 2444444443322 24444444444444443
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.63 E-value=39 Score=35.79 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 730 NSFIDGYCKFGQLEEAFKFLHDLKIN------CLEP-DKFTVSAVINGFCQKGDMEGALGFFLDF 787 (965)
Q Consensus 730 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (965)
..|...++-.||+..|+++++.+.-. .+.+ ...++-.++-+|...+++.+|++.|...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666554311 0111 1234444555555666666666665554
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.35 E-value=1.7e+02 Score=29.17 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=14.2
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 046930 185 FSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 185 ~~~~g~~~~A~~~~~~~~~~ 204 (965)
|.-.++...|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 55577888888877776654
No 413
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.95 E-value=94 Score=30.69 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=50.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--
Q 046930 663 IHSLCRQGCFVEAFRLFDSLER--IDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCK-- 738 (965)
Q Consensus 663 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 738 (965)
|.+++..+++.+++...-+--+ ..++|...-... -.|.+.|.+..+.++-...++..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4666777777776665444332 123333333333 3477888888888887777764222233446666666554
Q ss_pred ---cCCHHHHHHHH
Q 046930 739 ---FGQLEEAFKFL 749 (965)
Q Consensus 739 ---~g~~~~A~~~~ 749 (965)
.|.++||+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888888776
No 414
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.50 E-value=56 Score=36.12 Aligned_cols=91 Identities=7% Similarity=0.092 Sum_probs=63.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC---CCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhc
Q 046930 57 FCSQGNMSRAVEVLELMSDENVK---YPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCML 133 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (965)
..+..+|..+++.|..-...-+. ...-+.....+..+|....+.|.|.+.++++-+.+ |.++.....+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d--~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD--RQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHh
Confidence 45666777777777755443210 01112345566677888888888888888888876 66666777777778888
Q ss_pred CChhHHHHHHHHHHHC
Q 046930 134 GRVNEVNELFVRMESE 149 (965)
Q Consensus 134 ~~~~~A~~~~~~~~~~ 149 (965)
+.-++|+.+.......
T Consensus 442 ~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSS 457 (872)
T ss_pred cchHHHHHHHHHHHhh
Confidence 8888888888877665
No 415
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.84 E-value=57 Score=31.67 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=42.9
Q ss_pred HHHHHHHHH-HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 13 FDSLIQGFC-IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 13 ~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
|..++++++ .+.++++.|+..+-+- ...|+ ....+++++..+|+.+.|..++..+... ..+.++...+.
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~----l~s~~~~~~~~ 148 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPP----LSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCC----CCCHHHHHHHH
Confidence 344444443 3556666666554221 11111 1224555566667777666666653221 22333333333
Q ss_pred HHHHhcCChhhHHHHHHHHH
Q 046930 92 SGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~ 111 (965)
.+ ..++...+|..+-+...
T Consensus 149 ~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCc
Confidence 33 55566666666655543
No 416
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.49 E-value=1.7e+02 Score=28.15 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 046930 383 YSTMIDGYCKLGRIEEALEIFDELRRMSI 411 (965)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 411 (965)
+..+...-...+++.+|+++|+++.....
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444566777788888877766533
No 417
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.27 E-value=93 Score=25.16 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 046930 701 LCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN 755 (965)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 755 (965)
+.+.|++++|..+.+.+ ..||...|.+|.. .+.|-.+++..-+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34555555555554443 2455555544422 3444444444444444443
No 418
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.17 E-value=2.4e+02 Score=29.82 Aligned_cols=175 Identities=14% Similarity=0.114 Sum_probs=99.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH---HccCChHH
Q 046930 633 REGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNL---CKEGQLLD 709 (965)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~ 709 (965)
..++++.-..+++ . .+-...++..+...+..+|+...|.+++++++-.- ..++......+ ...|..
T Consensus 22 ~~~Dp~~l~~ll~----~-~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~-- 90 (360)
T PF04910_consen 22 QSHDPNALINLLQ----K-NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC-- 90 (360)
T ss_pred HccCHHHHHHHHH----H-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc--
Confidence 3445555444432 2 23466677777788888888888888877765310 00001100000 000100
Q ss_pred HHHHHHHHHHCCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHH-HhcCCHHHHHHHHH
Q 046930 710 AKKLFDRMVLKGFKPSTRIYN---SFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGF-CQKGDMEGALGFFL 785 (965)
Q Consensus 710 A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~ 785 (965)
. +.-....|...|. ..+..+.+.|-+.-|.++.+-+......-|+.....+|+.| .+.++++--+++++
T Consensus 91 -r------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 91 -R------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred -c------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 0001122333333 33667788899999999999888853222666666677777 46788888888888
Q ss_pred HhHhC------CCCCChHHHHHHHHHHhcCCCH---------------HHHHHHHHHHHhcCc
Q 046930 786 DFNTK------GVSPDFLGFLYLVKGLCTKGRM---------------EEARSILREMLQSKS 827 (965)
Q Consensus 786 ~~~~~------~~~p~~~~~~~l~~~~~~~g~~---------------~eA~~~~~~~~~~~~ 827 (965)
..... ..-|+. .+.++-++...++. ++|...+.+++...+
T Consensus 164 ~~~~~~~~~~~~~lPn~--a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 164 SPLAKCYRNWLSLLPNF--AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hHhhhhhhhhhhhCccH--HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 76431 123433 33345555566666 889999998888665
No 419
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.98 E-value=1.5e+02 Score=30.11 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc------CCHHHHHHHHHHhhhCCCCCChh-HHHHHHHHHHhcCCHHH
Q 046930 707 LLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKF------GQLEEAFKFLHDLKINCLEPDKF-TVSAVINGFCQKGDMEG 779 (965)
Q Consensus 707 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 779 (965)
++++..++++....+ .|-+......+.++-.. -+|..-..+|+.+.. +.|+++ +.|..+ +..+..-.+.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHh
Confidence 555555555555543 34444444443332211 134444445555444 344432 333322 2222233344
Q ss_pred HHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 780 ALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
++.+.+.+.+.+--.+... +..-+..+.+.|+.+||...|++++.
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 4555544433211111111 22344445555666666666655554
No 420
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.20 E-value=1e+02 Score=30.41 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=78.6
Q ss_pred cCCchHHHHHHHHHHHhCCC-----CCC-------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 24 RNDPEKALLVLKDCLRNHGT-----LPS-------SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~-----~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
..||..|+..=++.++.-.. .+. ...+..-|++++..++|.+++...-+..+...+.| +.++-.=+
T Consensus 48 ~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCI 125 (309)
T PF07163_consen 48 HRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCI 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHH
Confidence 35777777776666653311 111 12345567899999999999888776665543223 45566667
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH-----HHhcCChhHHHHHH
Q 046930 92 SGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA-----LCMLGRVNEVNELF 143 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~ 143 (965)
-.|.+.|.+..+.+.-...+... -+.+..-|..++.. +.-.|.+++|+++.
T Consensus 126 LLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 126 LLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 78999999999999999888753 12233345555544 45579999999987
No 421
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.37 E-value=4.4e+02 Score=31.58 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCCCchH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNH--GTLPSSFTFCSLVYSFCSQGNM--SRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
...|..|+--| ..+|+.++|++++++..+.. ...--...+..+++-+-+.+.- +-..+.-++.+..++ .....
T Consensus 504 ~~~y~~Li~LY-~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p--~~gi~ 580 (877)
T KOG2063|consen 504 SKKYRELIELY-ATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNP--EAGIQ 580 (877)
T ss_pred cccHHHHHHHH-HhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCc--hhhee
Confidence 34678888877 89999999999999977633 1111223344455544455554 777777778777764 11111
Q ss_pred HHH------------HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 86 VCS------------SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 86 ~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
++. ...--|+....++-++.+++.++... -.++....+.++..|+.
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~-~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN-RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc-cccchHHHHHHHHHHHH
Confidence 111 12234667788889999999998765 23455566666666654
No 422
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.31 E-value=78 Score=26.78 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=40.3
Q ss_pred HHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 046930 363 DARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYN 418 (965)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (965)
+..+-+..+...++.|++.+...-++++-+.+|+..|+++|+-+.....+....|-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~ 122 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYP 122 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHH
Confidence 44455566667777888888888888888888888888888887766443333333
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.96 E-value=93 Score=26.81 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=23.3
Q ss_pred HHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHH
Q 046930 779 GALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILRE 821 (965)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~ 821 (965)
.+.++|+.|...|+--..+. |..-+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666666655555544444 44455555556666666666554
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.05 E-value=3.5e+02 Score=32.95 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcC----------------------CCCCC-----HhhHHHHHHHHHhcCChhH
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLG----------------------ALKPN-----VVSYTSLVIALCMLGRVNE 138 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~-----~~~~~~l~~~~~~~~~~~~ 138 (965)
.-..++.+|...|..-+|+..|.++.+.- |-.|+ .+-|...++.+-+.+-.++
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 34556667888889999999888876521 11111 1224455666666666666
Q ss_pred HHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 046930 139 VNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL----ITY 213 (965)
Q Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 213 (965)
+.++...+++.-+ +| .|. +.+++.+.+-....|.+-+|...+-.- ||. ...
T Consensus 1002 vcQlA~~AIe~l~-dd-----------------~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcL 1057 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLP-DD-----------------NPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHhCC-Cc-----------------chhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHH
Confidence 6666666654311 00 122 345666666666777776666544332 233 334
Q ss_pred HHHHHHHHhcCChH------------HHHH-HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHH
Q 046930 214 TAIIFGFCKKGKLE------------EAFT-VFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRL 267 (965)
Q Consensus 214 ~~l~~~~~~~g~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 267 (965)
..++..+..+|.++ +... +++...+.........|+.|-..+...+++.+|-.+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 45566666666643 2233 222222221111223444444555666776665544
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.04 E-value=30 Score=20.44 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046930 394 GRIEEALEIFDELRRMSISSVACYNCIIN 422 (965)
Q Consensus 394 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (965)
|+.+.|..+|+++....|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777766666666665554
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.72 E-value=1.5e+02 Score=25.51 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVR 145 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 145 (965)
.+.++|..+...+-...-+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666665542233344555666666666777777766654
No 427
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.56 E-value=31 Score=20.37 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHhc
Q 046930 63 MSRAVEVLELMSDE 76 (965)
Q Consensus 63 ~~~A~~~~~~~~~~ 76 (965)
++.|..+|++++..
T Consensus 3 ~~~~r~i~e~~l~~ 16 (33)
T smart00386 3 IERARKIYERALEK 16 (33)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 428
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.37 E-value=2.4e+02 Score=27.73 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=112.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhc
Q 046930 55 YSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFFENAISLGALKPNVVSYTSLVIALCML 133 (965)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (965)
.++.+..+-+.|+.+-+.++..+ |.+-.+|.-.-.++...+ +..+-+++++++.... |.|-..|..-=.+....
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lN---pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n--pKNYQvWHHRr~ive~l 125 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLN---PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN--PKNYQVWHHRRVIVELL 125 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhC---cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHh
Confidence 34566677889999999999998 788888876665555544 5677788888888766 77877887555555556
Q ss_pred CChh-HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 046930 134 GRVN-EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLIT 212 (965)
Q Consensus 134 ~~~~-~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (965)
|+.. .-+++...|+..+ ..+-.+|..---++..-+.++.-+..-.++++.++. |-.+
T Consensus 126 ~d~s~rELef~~~~l~~D---------------------aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSA 183 (318)
T KOG0530|consen 126 GDPSFRELEFTKLMLDDD---------------------AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSA 183 (318)
T ss_pred cCcccchHHHHHHHHhcc---------------------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccch
Confidence 6666 5566677776532 355666666666666677889888888999887666 5566
Q ss_pred HHHHHHHHHh-cCC-----hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 046930 213 YTAIIFGFCK-KGK-----LEEAFTVFKKVEDLGLVADEFVYATLIDGVC 256 (965)
Q Consensus 213 ~~~l~~~~~~-~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (965)
||--.-.... .|- .+.-+.....++.. ++.|...|+-|-..+.
T Consensus 184 WN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 184 WNQRYFVITNTKGVISKAELERELNYTKDKILL-VPNNESAWNYLKGLLE 232 (318)
T ss_pred hheeeEEEEeccCCccHHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHH
Confidence 6643221111 121 22223333334443 3667778887665554
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.93 E-value=2.1e+02 Score=30.53 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=25.6
Q ss_pred HccCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHhhh
Q 046930 702 CKEGQLLDAKKLFDRMVLKGFKPSTR--IYNSFIDGYC--KFGQLEEAFKFLHDLKI 754 (965)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 754 (965)
.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555566666666655554 333332 2333333332 24455666666666554
No 430
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.42 E-value=3.2e+02 Score=28.92 Aligned_cols=158 Identities=9% Similarity=0.097 Sum_probs=91.7
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH---HhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL---CMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
|-...++..+..++...|+...|.++.++++-.- . .++......+ ...|... .
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~--e---~~~~~~F~~~~~~~~~g~~r---------------L---- 92 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF--E---RAFHPSFSPFRSNLTSGNCR---------------L---- 92 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H---HHHHHHhhhhhcccccCccc---------------c----
Confidence 7888889999999999999999998888887421 0 0011000000 0000000 0
Q ss_pred hhhHHhhhhhhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHH
Q 046930 158 YSCWICGQMVDKGIKPDTVSYT---ILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC-KKGKLEEAFTVF 233 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 233 (965)
.....-|...|. ..|..+.+.|-+..|.++.+-+...++.-|+......|..|+ +.++++--++++
T Consensus 93 ----------~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~ 162 (360)
T PF04910_consen 93 ----------DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS 162 (360)
T ss_pred ----------CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Confidence 001112333333 344567788999999999988888776656666666666554 667788788887
Q ss_pred HHHHHc------CCCCCHhHHHHHHHHHHhcCCH---------------hHHHHHHHHHHHC
Q 046930 234 KKVEDL------GLVADEFVYATLIDGVCRRGDL---------------DCAFRLLEDMEKK 274 (965)
Q Consensus 234 ~~~~~~------~~~~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~~ 274 (965)
+..... ...|+ ..|...+ ++...++. +.|...+.+....
T Consensus 163 ~~~~~~~~~~~~~~lPn-~a~S~aL-A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 163 ESPLAKCYRNWLSLLPN-FAFSIAL-AYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HhHhhhhhhhhhhhCcc-HHHHHHH-HHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 776542 11222 3444433 33344444 6777777666654
No 431
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=50.85 E-value=2.6e+02 Score=27.56 Aligned_cols=50 Identities=8% Similarity=-0.068 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHH----Hh-hhcCcHHHHHHHHHHHh
Q 046930 812 MEEARSILREMLQSKSVLELINRVDIEVESESVLNFLI----SL-CEQGSILEAIAILDEIG 868 (965)
Q Consensus 812 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~-~~~g~~~~A~~~~~~~~ 868 (965)
.+.|.+.|+++.+.-.. .+.|.......|+- -+ --.++.++|+++.++.-
T Consensus 144 ~~~a~~aY~~A~e~a~~-------~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALA-------ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHc-------cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56888888888763110 13444333322222 22 34699999998877643
No 432
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.14 E-value=5.1e+02 Score=30.57 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFA 647 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 647 (965)
.+.+.+...|+.+....+..- ..-|..++.-+.+.+.+++|++++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l---------~~d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANL---------IKDYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455666666666555433 223566677777888888888777543
No 433
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=48.89 E-value=2.5e+02 Score=34.60 Aligned_cols=158 Identities=15% Similarity=0.055 Sum_probs=88.7
Q ss_pred HHHHHhcCCHHHHHH------HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----CCCC--CCHhhH
Q 046930 628 VAALCREGYVNKALD------LCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLER-----IDMV--PSEVSY 694 (965)
Q Consensus 628 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~~~ 694 (965)
.......|.+.+|.+ ++...-..-.++....|..|...+-+.++.++|+..-.+..- .|.. -+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 333444556665555 555332221233455677778888888888888877654321 1221 124455
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CC----CC
Q 046930 695 ATLIYNLCKEGQLLDAKKLFDRMVLK-------GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINC---LE----PD 760 (965)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----p~ 760 (965)
..+...+...+....|+..+.+.... ..+|...+++.+...+...++++.|++..+.+.... +- +.
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 56655566666777777777666542 123344455566555556677777777777766531 11 13
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 761 KFTVSAVINGFCQKGDMEGALGFFL 785 (965)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~ 785 (965)
..++..+...+...+++..|++..+
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3456666666666666666555443
No 434
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.36 E-value=1.9e+02 Score=32.93 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHH----------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSF----------TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYP 81 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 81 (965)
.-.+++..| ....+|+.-+++... ++.- |+.. -|..-++---+-|+-++|+...-.+++... |
T Consensus 203 ~V~nlmlSy-RDvQdY~amirLVe~-Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg--~ 275 (1226)
T KOG4279|consen 203 TVSNLMLSY-RDVQDYDAMIRLVED-LKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEG--P 275 (1226)
T ss_pred HHHHHHhhh-ccccchHHHHHHHHH-HHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcC--C
Confidence 334455556 888999999998888 4432 2211 122222222345778889988888888776 6
Q ss_pred CchHHHHHHHHHHHh---------cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcC
Q 046930 82 FDNFVCSSVVSGFCK---------IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLG 134 (965)
Q Consensus 82 ~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (965)
..+..|-..+++|-. .+..+.|+++|+++.+. .|+..+-..+...+...|
T Consensus 276 vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev---eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 276 VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV---EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc---CchhhccccHHHHHHHhh
Confidence 677777666666543 45567799999999874 466654444444444444
No 435
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=47.55 E-value=2.8e+02 Score=34.14 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCChhHHHH------HHHH-HHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHH-------cCCC
Q 046930 51 CSLVYSFCSQGNMSRAVE------VLEL-MSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAIS-------LGAL 116 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~ 116 (965)
....+.....|.+.+|.+ ++.. +.... |.....|..+...+.+.|+.++|+.+-.++.- .+ .
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h---~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d-s 1011 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLH---PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD-S 1011 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcc---hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC-C
Confidence 334455566777777776 6663 33333 78889999999999999999999988766542 22 2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046930 117 KPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVG 196 (965)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 196 (965)
+.+...|..+.......++...|...+.++...-. +. .....+|...+++.+-..+...++++.|.+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~---------Ls----~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL---------LS----SGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc---------cc----cCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 33345676777666677788888888777765310 00 011123334444555555556688899999
Q ss_pred HHHHHHHCC-----CC--CCHHHHHHHHHHHHhcCChHHHHHH
Q 046930 197 ILNKMIEDR-----LR--PNLITYTAIIFGFCKKGKLEEAFTV 232 (965)
Q Consensus 197 ~~~~~~~~~-----~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 232 (965)
+++.+.+.. ++ .+..++..+.+.+...+++..|+..
T Consensus 1079 ~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1079 YLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 988887631 11 1344455555555555555544443
No 436
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.48 E-value=1.2e+02 Score=33.85 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh------hHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV------SYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
.|+ -+.-..+..+|..++++|...+..- +.|.. .+..+.-+|....+.|.|.++++++.+.++
T Consensus 357 LWn-~A~~~F~~~~Y~~s~~~y~~Sl~~i--~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 357 LWN-TAKKLFKMEKYVVSIRFYKLSLKDI--ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHH-hhHHHHHHHHHHHHHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 444 4555678889999999999887643 34432 345666678888999999999999988654
No 437
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.43 E-value=3.5e+02 Score=28.57 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=11.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 802 LVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 802 l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
++..-.-++++..|.+.+-+++.+
T Consensus 253 ~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 253 LGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HhhHHHhhcchhHHHHHHHHHHHh
Confidence 444444455555555555554443
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.36 E-value=2.2e+02 Score=30.46 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChh--HHHHHHHHH--HhcCCHHHHHHHHHHhHh
Q 046930 731 SFIDGYCKFGQLEEAFKFLHDLKINCLEPDKF--TVSAVINGF--CQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 731 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 789 (965)
..+..+.+.+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3344566889999999999999885 455443 556666666 567789999999998754
No 439
>PRK12798 chemotaxis protein; Reviewed
Probab=46.95 E-value=3.9e+02 Score=28.53 Aligned_cols=197 Identities=15% Similarity=0.076 Sum_probs=104.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCc
Q 046930 222 KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGV-CRRGDLDCAFRLLEDMEKKGIKPSI----VTYNTIINGLCKVGRT 296 (965)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~ 296 (965)
-.|+..++.+.+..+.....++....|..|+.+- .-..+...|+++|+...-. -|.. .....-+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 4588999999998888776677777777777554 4456888999999887654 2322 2333334444556666
Q ss_pred chHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc---CCHHHHHHHHHHch
Q 046930 297 SDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI-VMCNILIKALFMV---GALEDARALYQAMP 372 (965)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 372 (965)
++...+- .+++++.... |=. ..+..+...+.+. -..+.-..++..|.
T Consensus 202 ~rf~~la--------------------------~~Y~rRF~~S---~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d 252 (421)
T PRK12798 202 DKFEALA--------------------------RNYLRRFRHS---PYASQFAQRFVDLVVRLDDEIRDARLVEILSFMD 252 (421)
T ss_pred HHHHHHH--------------------------HHHHHHhccC---chHHHHHHHHHHHHHhccccccHHHHHHHHHhcC
Confidence 6554331 1222222211 111 1111122222222 22233333333332
Q ss_pred hCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 046930 373 EMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS-ISS---VACYNCIINGLCKSGMVDMATEVFIELNEKGLSLY 448 (965)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (965)
. ......|..+...-.-.|+.+-|...-++..... ..+ ..+...-..+-.-..+++++.+.+.++-...+.+.
T Consensus 253 ~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 253 P---ERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred c---hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 1 1223467777777778888888877777776652 111 11111111122234557777777777766555555
Q ss_pred HHhH
Q 046930 449 VGMH 452 (965)
Q Consensus 449 ~~~~ 452 (965)
...+
T Consensus 330 Dr~L 333 (421)
T PRK12798 330 DRAL 333 (421)
T ss_pred hHHH
Confidence 5443
No 440
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.65 E-value=49 Score=32.89 Aligned_cols=79 Identities=5% Similarity=0.052 Sum_probs=54.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH-HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhh
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS-VVSGFCKIGKPELAIGFFENAISLGALKPNVVS 122 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 122 (965)
+.|+..|...+.--.+.+.+.+...+|.+.++.+ |.+++.|.. -..-+.-.++++.+..+|.+.+..+ +.++..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh---P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N--~~~p~i 178 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH---PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN--SRSPRI 178 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC--CCCchH
Confidence 4466666666655556677888888888888887 778877765 3345666778888888888888766 555556
Q ss_pred HHHHH
Q 046930 123 YTSLV 127 (965)
Q Consensus 123 ~~~l~ 127 (965)
|....
T Consensus 179 w~eyf 183 (435)
T COG5191 179 WIEYF 183 (435)
T ss_pred HHHHH
Confidence 55433
No 441
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.60 E-value=2.9e+02 Score=27.06 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Q 046930 626 TIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLC-RQGCFVEAFRLFDSLER 684 (965)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~ 684 (965)
.++....+.|++++....++++...+...+..--+.+..+|- ..|....+..++.....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 355667778888888888888888776666666666666653 23444555555555543
No 442
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.18 E-value=3.3e+02 Score=31.14 Aligned_cols=197 Identities=12% Similarity=0.075 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhH-------HHHHHHHH---hc
Q 046930 673 VEAFRLFDSLERIDMVPS---EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIY-------NSFIDGYC---KF 739 (965)
Q Consensus 673 ~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~l~~~~~---~~ 739 (965)
++--.++.+|...--.|+ ..+...++-.|....+++..+++.+.+.+. ||..-+ ...+-++- +-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 444566777776422344 456667777788888999999999988763 221111 01111222 34
Q ss_pred CCHHHHHHHHHHhhhC--CCCCChhH-----HHH--HHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCC
Q 046930 740 GQLEEAFKFLHDLKIN--CLEPDKFT-----VSA--VINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKG 810 (965)
Q Consensus 740 g~~~~A~~~~~~~~~~--~~~p~~~~-----~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 810 (965)
|+-++|+...-.+.+. .+.||..+ |.- +...|...+..+.|+++|+++ .+++|...+=.+++..+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka--FeveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA--FEVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH--hccCchhhccccHHHHHHHhh
Confidence 7888888877666654 36677643 211 122234456678899999998 458888766444555555555
Q ss_pred CHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHH---HhhhcCcHHHHHHHHHHHhhccCCCcccc
Q 046930 811 RMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLI---SLCEQGSILEAIAILDEIGYMLFPTQRFG 878 (965)
Q Consensus 811 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 878 (965)
..=|--.-++++-- ....|+++.|.--+...++..+. +-.-+.++.+|++..+.+- ...+..||
T Consensus 335 ~~Fens~Elq~Igm--kLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mf--KLk~P~WY 401 (1226)
T KOG4279|consen 335 EHFENSLELQQIGM--KLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMF--KLKPPVWY 401 (1226)
T ss_pred hhccchHHHHHHHH--HHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHh--ccCCceeh
Confidence 43222222222111 01122333232222333444333 2234678888888877653 23334453
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.00 E-value=83 Score=31.17 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISL----GALKPNVVSYTSLVIALCMLGRVNEVNELFVRM 146 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 146 (965)
.......++..|.+.|++++|+++|+.+... +-......+...+..++.+.|+.+..+.+--++
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3355567777778888888888887777532 212333445556667777777777776665444
No 444
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.43 E-value=3.6e+02 Score=27.68 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=84.8
Q ss_pred CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH------hcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC
Q 046930 25 NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFC------SQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG 98 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (965)
+-.+++...+.+++... .|.++.....+.++- ..-+|..-..+|+......+ ++.+-.+.+.+....-
T Consensus 270 ~lI~eg~all~rA~~~~--~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap----SPvV~LNRAVAla~~~ 343 (415)
T COG4941 270 ALIDEGLALLDRALASR--RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP----SPVVTLNRAVALAMRE 343 (415)
T ss_pred HHHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC----CCeEeehHHHHHHHhh
Confidence 33457888899988754 477777666655542 23478888888888877763 3333344555566666
Q ss_pred ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 99 KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
-++.++...+.+...+.+..-...+..-+..+.+.|+.++|...|++.+..
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 678888888888776544444455667788899999999999999999875
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.31 E-value=72 Score=33.89 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENV-----KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
+..+|++.++-.|++..|+++++.+--... -++-...+++-+|-+|.-.++|.+|+..|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888899999999999886532110 012334456666777777777777777776665
No 446
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.22 E-value=4.8e+02 Score=29.09 Aligned_cols=170 Identities=11% Similarity=0.036 Sum_probs=101.0
Q ss_pred cCChhhHHHHHHHHHHcCC----------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 97 IGKPELAIGFFENAISLGA----------LKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
...|++|...|.-+..... .|-.+.+...+..++...|+.+.|..+.++.+= .+...++...
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly--------~~d~a~hp~F 322 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY--------VFDRALHPNF 322 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH--------HHHHHhcccc
Confidence 4567888888888776430 122244566677778889998887777666431 1111111100
Q ss_pred --------hhcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHH
Q 046930 167 --------VDKGIKPDTVSYTI---LLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC-KKGKLEEAFTVFK 234 (965)
Q Consensus 167 --------~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 234 (965)
.....+-|-..|.. .|....+.|-+..|.++-.-+.+..+.-|+.....+|..|+ +..++.--+++++
T Consensus 323 ~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 323 IPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred ccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 01111223333333 33456678999999999988888766657777777887765 5678888888888
Q ss_pred HHHHcC---CCCCHhHHHHHHHHHHhcCC---HhHHHHHHHHHHHC
Q 046930 235 KVEDLG---LVADEFVYATLIDGVCRRGD---LDCAFRLLEDMEKK 274 (965)
Q Consensus 235 ~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 274 (965)
.....+ ..||-..-..+...|.+... -..|...+.+....
T Consensus 403 ~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 403 EPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 775433 24444333444555555444 34555556555554
No 447
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.07 E-value=2.7e+02 Score=26.24 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSD 75 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 75 (965)
....+++. |..+||++.|-+.|--+++..++... ..|..-+.++.+.+.-....+.++.+..
T Consensus 43 ~L~~lLh~-~llr~d~~rA~Raf~lLiR~~~VDiR-~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 43 VLTDLLHL-CLLRGDWDRAYRAFGLLIRCPEVDIR-SLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHH-HHHhccHHHHHHHHHHHHcCCCCChH-hcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 34455564 58889999999998888876654333 2466666666666665555566665543
No 448
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=44.99 E-value=1.1e+02 Score=30.13 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=39.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
.+=.++.+.++++.|..+-++.+..+ |.++.-+.-.|.+|.+.|.+.-|++-++.....
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~---P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLN---PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhC---CCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 33345566667777777777777666 666666666777777777777777776665554
No 449
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.50 E-value=6.8e+02 Score=30.70 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHH
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD---EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSI----VTYNT 285 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ 285 (965)
|-.+++.+-+.+-.+.+.++-..+++.-.+.+ ..+++.+...+...|.+-+|.+.+ ... ||. .+...
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~n---pdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LRN---PDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---HcC---CcHHHHHHHHHH
Confidence 34455556666666666666555554321111 224444555555555555554433 221 232 24455
Q ss_pred HHHHHHhcCCcc
Q 046930 286 IINGLCKVGRTS 297 (965)
Q Consensus 286 l~~~~~~~g~~~ 297 (965)
++..++.+|..+
T Consensus 1060 lvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1060 LVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHhccchH
Confidence 555566666554
No 450
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.26 E-value=45 Score=21.37 Aligned_cols=28 Identities=21% Similarity=-0.006 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
.++..++..-...++|+.|++-|++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566677777777777777777777764
No 451
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.19 E-value=4.4e+02 Score=28.37 Aligned_cols=117 Identities=12% Similarity=0.078 Sum_probs=66.3
Q ss_pred HhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCC----CCHHHHHHHHHHhhhcCChhHHH
Q 046930 256 CRRGDLDCAFRLLEDMEKK-GIKPSIVTYNTIINGLCKVGRTSDAEEVSKGIL----GDVVTYSTLLHGYIEEDNVNGIL 330 (965)
Q Consensus 256 ~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~ 330 (965)
...|++-.|-+-+...+.+ ...|+.....+ ......|.++.+...+.++. ....+...+++.....++++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3567777766555554443 23344433333 33456788888887776552 34455666666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 046930 331 ETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMN 375 (965)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (965)
..-+-|+...+. ++.........-...|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 777666655443 22222222222334566677777777666544
No 452
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=42.55 E-value=6.2e+02 Score=29.67 Aligned_cols=372 Identities=12% Similarity=0.017 Sum_probs=184.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH---HhcCChhhHHHHHHHHHHcCCCCCCHhh
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF---CKIGKPELAIGFFENAISLGALKPNVVS 122 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 122 (965)
+...+..|+..+.+.|++++....=..|.+.- |.++..|..-+... ...+...++...|++++... .++..
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~---pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy---~~v~i 185 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA---PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY---NSVPI 185 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc---ccchH
Confidence 33446677888889999888877777777776 66666666555433 34577888999999998643 34444
Q ss_pred HHHHHHHH-------HhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH---HHHHhcCCHH
Q 046930 123 YTSLVIAL-------CMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL---DGFSKEGTIE 192 (965)
Q Consensus 123 ~~~l~~~~-------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~ 192 (965)
|.-.+..+ ...++++....+|.++++.- ...+......|..+. ..|...-..+
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~-----------------g~~~t~G~~~we~~~E~e~~~l~n~~~~ 248 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL-----------------GSHITEGAAIWEMYREFEVTYLCNVEQR 248 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHhhh-----------------hhhhcccHHHHHHHHHHHHHHHHhHHHH
Confidence 44333322 34467788888888887531 000112233343333 3344445557
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHH-------HHHHcCCCCCHhHHHHHHHHHHhc
Q 046930 193 KAVGILNKMIEDRLRPNLITYTAIIFGFC-------KKGKLEEAFTVFK-------KVEDLGLVADEFVYATLIDGVCRR 258 (965)
Q Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~ 258 (965)
+...+|..-+..+. |..+-+.-..--. ...+++.+..-+. ...... ++--..|..++....+.
T Consensus 249 qv~a~~~~el~~~~--D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~ 325 (881)
T KOG0128|consen 249 QVIALFVRELKQPL--DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKS 325 (881)
T ss_pred HHHHHHHHHHhccc--hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhc
Confidence 77777777776542 2222211111111 1123333333322 222221 22334566777777888
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCcchHHHHHc----CCCCCHHHHHHHHHHhhhcCChhH-HHHH
Q 046930 259 GDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLC-KVGRTSDAEEVSK----GILGDVVTYSTLLHGYIEEDNVNG-ILET 332 (965)
Q Consensus 259 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~-a~~~ 332 (965)
|++-....+++++....+ .+...|..-..-.- ..+-.+.+..+.. ..+-....|....-++.+.+.... ....
T Consensus 326 G~p~ri~l~~eR~~~E~~-~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~ 404 (881)
T KOG0128|consen 326 GDPVRIQLIEERAVAEMV-LDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQN 404 (881)
T ss_pred CCchHHHHHHHHHHHhcc-ccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHH
Confidence 888777777777664321 12222221110000 0111111111111 111222233333333333332221 1122
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc-------------CCHHHHHHHHHHchhCCCcccHHHHHHHHHHHH-HcCCHHH
Q 046930 333 KQRLEEAGIQMDIVMCNILIKALFMV-------------GALEDARALYQAMPEMNLVANSVTYSTMIDGYC-KLGRIEE 398 (965)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~-------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 398 (965)
+......++. .++....-..+. ..+..|...|.........+...+......... -.++.+.
T Consensus 405 l~~~ls~~~~----l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~ 480 (881)
T KOG0128|consen 405 LEKDLSMTVE----LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDK 480 (881)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhh
Confidence 2222221110 111111111111 123445555554443222233333333333333 3678889
Q ss_pred HHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 046930 399 ALEIFDELRRMSISSVA-CYNCIINGLCKSGMVDMATEVFIELNEKGLSLY 448 (965)
Q Consensus 399 A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (965)
++.+++.+...+..+.. .|...+..-...|+...+..+++.....-..|+
T Consensus 481 ~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 481 AREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred hhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 99999888777555555 777777777777888888888887776544444
No 453
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.22 E-value=3.6e+02 Score=26.82 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=97.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED- 204 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 204 (965)
+.+-..+.+++++|+..|.+++..|...|..+.+ ....+...+...|...|++..--+......+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n-------------EqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m 75 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN-------------EQEATVLELFKLYVSKGDYCSLGDTITSSREAM 75 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh-------------HHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH
Confidence 3444556777888888888877766655433322 22445556667777777765544443322211
Q ss_pred --CCCC-CHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCH-----hHHHHHHHHHHhcCCHhHHHHHHHHH----
Q 046930 205 --RLRP-NLITYTAIIFGFCK-KGKLEEAFTVFKKVEDLGLVADE-----FVYATLIDGVCRRGDLDCAFRLLEDM---- 271 (965)
Q Consensus 205 --~~~~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~---- 271 (965)
--+| ......+++.-+-. ...++..+.+....++....... ..-..++..+.+.|++.+|+.+...+
T Consensus 76 ~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~El 155 (421)
T COG5159 76 EDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHEL 155 (421)
T ss_pred HHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 0011 22223334433322 23455555555555443211111 12234677788889999888765444
Q ss_pred HHCCCCCCHHHHHHHH-HHHHhcCCcchH-------HHHHcCC--CCCHHHHHHHHHHh--hhcCChhHHHHHHHHHHH
Q 046930 272 EKKGIKPSIVTYNTII-NGLCKVGRTSDA-------EEVSKGI--LGDVVTYSTLLHGY--IEEDNVNGILETKQRLEE 338 (965)
Q Consensus 272 ~~~g~~~~~~~~~~l~-~~~~~~g~~~~a-------~~~~~~~--~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 338 (965)
.+.+-.|+..+...+- .+|....+..++ ...-..+ ||....-.-++.+- +...++..|...|-+..+
T Consensus 156 Kk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 156 KKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 4444444433222111 123333332222 2222222 55555555555543 444566666666655544
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.13 E-value=99 Score=22.50 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Q 046930 659 YNTVIHSLCRQGCFVEAFRLFDSLE 683 (965)
Q Consensus 659 ~~~l~~~~~~~~~~~~A~~~~~~~~ 683 (965)
.-.++.+|...|++++|.++.+++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555544
No 455
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.02 E-value=4e+02 Score=27.02 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=9.2
Q ss_pred HccCChHHHHHHHHHHHH
Q 046930 702 CKEGQLLDAKKLFDRMVL 719 (965)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~ 719 (965)
.+.|+..+|.+.++++.+
T Consensus 286 RklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHhhhHHHHHHHHHHHhh
Confidence 344555555555555444
No 456
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.42 E-value=83 Score=31.25 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=51.9
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
.+.|+.+.|..+|..++... |..+.+...++...-..++.-+|-.+|-+++..+ |.+.+++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlala--P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis---P~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALA--PTNPQILIEMGQFREMHNEIVEADQCYVKALTIS---PGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcC--CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC---CCchHHHhh
Confidence 57899999999999999866 4456677777777777788999999999999988 778777654
No 457
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.16 E-value=86 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHH
Q 046930 249 ATLIDGVCRRGDLDCAFRLLEDME 272 (965)
Q Consensus 249 ~~l~~~~~~~g~~~~A~~~~~~~~ 272 (965)
..+|.++...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455555555555555555544
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.19 E-value=4.1e+02 Score=26.56 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----CCCCCCHh-hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh---
Q 046930 655 NIVTYNTVIHSLCRQGCFVEAFRLFDSLER----IDMVPSEV-SYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPST--- 726 (965)
Q Consensus 655 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 726 (965)
-..++..++..|++.++.+.+.++..+..+ .|.+.|.. +-..|.-.|....-.++-++..+.|+++|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 356788999999999999999988877655 46666633 3334455566666788999999999999765542
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 046930 727 -RIYNSFIDGYCKFGQLEEAFKFLHDLKI 754 (965)
Q Consensus 727 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 754 (965)
.+|..+ .+....++.+|-.++.....
T Consensus 194 yK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 233332 23445578888888877654
No 459
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.06 E-value=4.7e+02 Score=30.81 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=107.5
Q ss_pred HhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 046930 564 LCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDL 643 (965)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 643 (965)
+-.+++++.+.+.+...-.+ .+++.-+.+.|..+-|+..++.-...+ .....+|+++.|++.
T Consensus 604 Li~k~ydeVl~lI~ns~LvG------qaiIaYLqKkgypeiAL~FVkD~~tRF------------~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 604 LLNKKYDEVLHLIKNSNLVG------QAIIAYLQKKGYPEIALHFVKDERTRF------------ELALECGNLEVALEA 665 (1202)
T ss_pred HHhhhhHHHHHHHHhcCccc------HHHHHHHHhcCCcceeeeeecCcchhe------------eeehhcCCHHHHHHH
Confidence 33456777777766544332 345566667777777776655432222 224567899998876
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 046930 644 CAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFK 723 (965)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (965)
-.++- +..+|..|+..-..+|+.+-|...|++... |..|-..|.-.|+.++-.++.+.+...
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r--- 727 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR--- 727 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---
Confidence 55432 678899999999999999999988887654 333334466677877766666555432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 724 PSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 724 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
.|....+ ..-.-.|++++=.++++..-. .| ..|... ..+|.-++|.++.++.-.
T Consensus 728 ~D~~~~~---qnalYl~dv~ervkIl~n~g~---~~--laylta----~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 728 NDATGQF---QNALYLGDVKERVKILENGGQ---LP--LAYLTA----AAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hhhHHHH---HHHHHhccHHHHHHHHHhcCc---cc--HHHHHH----hhcCcHHHHHHHHHhhcc
Confidence 2322211 111235777777766655422 22 222211 256777888888877643
No 460
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=36.80 E-value=77 Score=20.32 Aligned_cols=27 Identities=15% Similarity=0.024 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 798 GFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 798 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+|..|+..-...+++++|+.-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 467788888889999999998888876
No 461
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.65 E-value=1.7e+02 Score=27.65 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=25.9
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.|++.++..++.++...|+.++|.++.+++...-
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566777788888888888888888888877643
No 462
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.62 E-value=1.4e+02 Score=28.07 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=17.6
Q ss_pred CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 792 VSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 792 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
..|+...+..++..+...|+.++|....+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544
No 463
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.57 E-value=4e+02 Score=25.70 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC-----ChHHHHHHHHHHhcCCCHHHHHHHHH
Q 046930 746 FKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP-----DFLGFLYLVKGLCTKGRMEEARSILR 820 (965)
Q Consensus 746 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~eA~~~~~ 820 (965)
.+..+++.. +.++..-+|.|+.-|.-...+.+|.+.|.+- .|+.| +...-..-+......|+.++|++...
T Consensus 13 ~~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 13 EEWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred hhhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Q ss_pred HHHhcCcchhhhhccccccccccHHHHHH----HhhhcCcHHHHHHHHHH
Q 046930 821 EMLQSKSVLELINRVDIEVESESVLNFLI----SLCEQGSILEAIAILDE 866 (965)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~ 866 (965)
+....- ++-+.+.+..|.. .+.+.|..++|+++++.
T Consensus 89 ~l~Pei----------Ld~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 89 QLNPEI----------LDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HhChHH----------HccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 464
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.21 E-value=4.3e+02 Score=32.34 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHH-HHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhh-
Q 046930 489 DVISFLCKRGSSEVASELYMF-MRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCL- 566 (965)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 566 (965)
..+.-+...++|.+|..+.++ -+..+.. +...+..+..-+..+...
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll--------------------------------~Dh~p~~Fl~ni~~Fv~qi 746 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLL--------------------------------YDHNPEQFLENIELFVEQI 746 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceE--------------------------------EECCHHHHHHHHHHHHHhc
Q ss_pred hcHHHHHHHHHhhhhcCccccchHHHH------------HHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhc
Q 046930 567 NDVTNALLFIKNMKEISSTVTIPVNVL------------KKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCRE 634 (965)
Q Consensus 567 ~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (965)
++.+---.++..+.+.+.+.+.+.... ......+++...++.+...... +.....-...++.+|++.
T Consensus 747 ~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk 825 (928)
T PF04762_consen 747 KDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKK 825 (928)
T ss_pred CCHHHHHHHHHhcccccccccccccccccccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhc
Q ss_pred C--CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHH----HHHhCCCCCCHhhHHHHHHHHHcc----
Q 046930 635 G--YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFD----SLERIDMVPSEVSYATLIYNLCKE---- 704 (965)
Q Consensus 635 g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~---- 704 (965)
+ ++++|+....++.+.+...-..+...|+..---..-++.|+.+|+ .|....-.-|+.-|.-.+.-+.+.
T Consensus 826 ~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~ 905 (928)
T PF04762_consen 826 SPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLY 905 (928)
T ss_pred CchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhh
Q ss_pred ---------CChHHHHHHHHHH
Q 046930 705 ---------GQLLDAKKLFDRM 717 (965)
Q Consensus 705 ---------g~~~~A~~~~~~~ 717 (965)
|++++|++.+.++
T Consensus 906 rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 906 RRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eeeeHhhhhCCHHHHHHHHHhh
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.84 E-value=2.5e+02 Score=24.96 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=40.8
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC
Q 046930 34 LKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK 99 (965)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 99 (965)
+...++..|+..++ .-..++..+...++...|.++|+.+.+.++ +.+..+.+..++.+...|-
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p--~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGP--GISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCC--CCCHhHHHHHHHHHHHCCC
Confidence 34446666765553 334556667777777888888888888775 5555555666666666553
No 466
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.48 E-value=4.8e+02 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=14.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHH
Q 046930 489 DVISFLCKRGSSEVASELYMFM 510 (965)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~ 510 (965)
.++..+.+.|++.+|+.+....
T Consensus 130 Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 4566677777777777665543
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.45 E-value=1.8e+02 Score=29.89 Aligned_cols=63 Identities=24% Similarity=0.120 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHh
Q 046930 743 EEAFKFLHDLKINCLEPDK----FTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLC 807 (965)
Q Consensus 743 ~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 807 (965)
++...++..++.. -|+. -.|-.++......|.+++.+.+|++++..|-.|-...-..++..+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4455555555543 4443 2455666666677777777777777777777776666555666655
No 468
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.94 E-value=3.2e+02 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=13.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 046930 627 IVAALCREGYVNKALDLCAFAKN 649 (965)
Q Consensus 627 l~~~~~~~g~~~~A~~~~~~~~~ 649 (965)
.+..|.+.|.+++|.++++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456666666666666666554
No 469
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.06 E-value=2.8e+02 Score=22.94 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN 140 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 140 (965)
...++|..+.++....+. ....+....+..+...|+|++| +...... ..||...|..+. --+.|..+++.
T Consensus 20 HcH~EA~tIa~wL~~~~~---~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~--~~pdL~p~~AL~--a~klGL~~~~e 89 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE---MEEVVALIRLSSLMNRGDYQEA---LLLPQCH--CYPDLEPWAALC--AWKLGLASALE 89 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT---THHHHHHHHHHHHHHTT-HHHH---HHHHTTS----GGGHHHHHHH--HHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHhhHHHHHH---HHhcccC--CCccHHHHHHHH--HHhhccHHHHH
Confidence 345566666666555541 1222222333345556666666 2222221 144555554433 34556666666
Q ss_pred HHHHHHH
Q 046930 141 ELFVRME 147 (965)
Q Consensus 141 ~~~~~~~ 147 (965)
..+.++-
T Consensus 90 ~~l~rla 96 (116)
T PF09477_consen 90 SRLTRLA 96 (116)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 6655554
No 470
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.51 E-value=2.3e+02 Score=22.93 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
...-.+.++++...+. +..+-....++-.|.+.|+.+.|.+-|+.-... -|.+.+|.
T Consensus 53 ~~~le~~~ek~~ak~~--~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal---FPES~~fm 109 (121)
T COG4259 53 TAALEKYLEKIGAKNG--AVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL---FPESGVFM 109 (121)
T ss_pred HHHHHHHHHHHhhcCC--CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh---CccchhHH
Confidence 3344566777777776 455556677888899999999999999876653 45555543
No 471
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.76 E-value=2.6e+02 Score=32.67 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=100.7
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELA 103 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 103 (965)
+.+|++.+.+.+. +.+ +=..++.-+.+.|..+-|+...+.- .. .....+..|+.+.|
T Consensus 606 ~k~ydeVl~lI~n----s~L-----vGqaiIaYLqKkgypeiAL~FVkD~-----------~t---RF~LaLe~gnle~a 662 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKN----SNL-----VGQAIIAYLQKKGYPEIALHFVKDE-----------RT---RFELALECGNLEVA 662 (1202)
T ss_pred hhhhHHHHHHHHh----cCc-----ccHHHHHHHHhcCCcceeeeeecCc-----------ch---heeeehhcCCHHHH
Confidence 3566776665433 222 1223444445667666666554321 11 12234567888888
Q ss_pred HHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHH
Q 046930 104 IGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLD 183 (965)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 183 (965)
++.-.+. .+...|..++....+.|+.+-|+-+|++... |+.|-=
T Consensus 663 le~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn-----------------------------fekLsf 706 (1202)
T KOG0292|consen 663 LEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN-----------------------------FEKLSF 706 (1202)
T ss_pred HHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh-----------------------------hhheeE
Confidence 8766543 4677899999988899999999988888764 222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhH
Q 046930 184 GFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDC 263 (965)
Q Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 263 (965)
.|.-.|+.++-.++-..+..++ |..+.. ....-.|+.++-.++++..- ..+ ..|.. -...|.-++
T Consensus 707 LYliTgn~eKL~Km~~iae~r~---D~~~~~---qnalYl~dv~ervkIl~n~g----~~~-laylt----a~~~G~~~~ 771 (1202)
T KOG0292|consen 707 LYLITGNLEKLSKMMKIAEIRN---DATGQF---QNALYLGDVKERVKILENGG----QLP-LAYLT----AAAHGLEDQ 771 (1202)
T ss_pred EEEEeCCHHHHHHHHHHHHhhh---hhHHHH---HHHHHhccHHHHHHHHHhcC----ccc-HHHHH----HhhcCcHHH
Confidence 3555777777766665554431 322211 11122466766666654432 212 23322 234577788
Q ss_pred HHHHHHHHHHC
Q 046930 264 AFRLLEDMEKK 274 (965)
Q Consensus 264 A~~~~~~~~~~ 274 (965)
|.++.++..+.
T Consensus 772 ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 772 AEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHhhccc
Confidence 88888887664
No 472
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.69 E-value=4.9e+02 Score=25.23 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=54.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-----------CCCCHhHHHHHH
Q 046930 185 FSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL-G-----------LVADEFVYATLI 252 (965)
Q Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----------~~~~~~~~~~l~ 252 (965)
|.+..+..--.++.+-....+++-+......++ +...|+...|+..++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 333333333333333333334443333443333 44567777776666554321 1 145555666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046930 253 DGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGL 290 (965)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 290 (965)
..+ ..+++++|.+++.++-+.|+.|.. ..+.+.+.+
T Consensus 247 ~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 247 QAC-LKRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 554 458889999999998888887643 334444443
No 473
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.42 E-value=1.1e+02 Score=30.57 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=59.5
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCCch
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCS-LVYSFCSQGNMSRAVEVLELMSDENVKYPFDN 84 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (965)
+|.+...|...++ |..+.+.+..--..|..+++.+|. +...|.. -..-+...++++.+..+|...+..+ |.++
T Consensus 103 ff~D~k~w~~y~~-Y~~k~k~y~~~~nI~~~~l~khP~--nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N---~~~p 176 (435)
T COG5191 103 FFNDPKIWSQYAA-YVIKKKMYGEMKNIFAECLTKHPL--NVDLWIYCCAFELFEIANIESSRAMFLKGLRMN---SRSP 176 (435)
T ss_pred CCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC--CceeeeeeccchhhhhccHHHHHHHHHhhhccC---CCCc
Confidence 4555566665555 547888999999999999998854 4444333 3334677899999999999999999 7777
Q ss_pred HHHHHHHH
Q 046930 85 FVCSSVVS 92 (965)
Q Consensus 85 ~~~~~l~~ 92 (965)
..|....+
T Consensus 177 ~iw~eyfr 184 (435)
T COG5191 177 RIWIEYFR 184 (435)
T ss_pred hHHHHHHH
Confidence 77765444
No 474
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.89 E-value=6.4e+02 Score=26.34 Aligned_cols=19 Identities=16% Similarity=-0.183 Sum_probs=13.9
Q ss_pred HHhcCcHHHHHHHHHHHHh
Q 046930 494 LCKRGSSEVASELYMFMRK 512 (965)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~~ 512 (965)
|....+++.|+.+|+.++-
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 5566788888888877654
No 475
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.68 E-value=7.3e+02 Score=26.96 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 046930 634 EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQG 670 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 670 (965)
.++.+.|+..+..|++.|..|....-..+..++...|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3677888888888888776666554444444444333
No 476
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.40 E-value=5.4e+02 Score=25.05 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=54.1
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHH
Q 046930 701 LCKEGQLLDAKKLFDRMVLKGFKPSTRIYN-SFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEG 779 (965)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 779 (965)
+...|+++.|+++.+-+++.|.+ .+..|. .+...++ ++.........+.|-..++.....
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~-~Pd~f~R~~~t~va-----eev~~~A~~~~~ag~~~e~~~~~~------------- 153 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT-MPDQFRRTLANFVA-----EEVANAALKAASAGESVEPYFLRV------------- 153 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC-CCccccCCchHHHH-----HHHHHHHHHHHHcCCCCChHHHHH-------------
Confidence 45788888888888888887643 222222 2222221 444444445555443333332221
Q ss_pred HHHHHHHhHhCCCCCChHH---HHHHHHHHh---------cCCCHHHHHHHHHHHHhc
Q 046930 780 ALGFFLDFNTKGVSPDFLG---FLYLVKGLC---------TKGRMEEARSILREMLQS 825 (965)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~---~~~l~~~~~---------~~g~~~eA~~~~~~~~~~ 825 (965)
+..+...---||... |..++..+. ..++...|..+++++++.
T Consensus 154 ----~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 154 ----FLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred ----HHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 122211112344433 445555563 456888999999999984
No 477
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.11 E-value=2.7e+02 Score=27.55 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046930 382 TYSTMIDGYCKLGRIEEALEIFDELRRMS------ISSVACYNCIINGLCKSGMVDMATEVFIE 439 (965)
Q Consensus 382 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (965)
....++.-|...|++++|.++|+.+.... .....+...+..++...|+.+..+.+.-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34456666777777777777777664331 11233444555555566665555554433
No 478
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.46 E-value=7.4e+02 Score=26.33 Aligned_cols=101 Identities=9% Similarity=-0.091 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHh----HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCCchHHH
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFT----FCSLVYSFCSQGNMSRAVEVLELMSDENVK-YPFDNFVC 87 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 87 (965)
|+-+-..| ...|+...-...+...++...+.++... .+.+++.|...+.+++|.+...+..-.... ...-+.-+
T Consensus 172 ~fy~~l~~-E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 172 YFYLYLSY-ELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL 250 (493)
T ss_pred HHHHHHHH-HhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence 33334444 4556666666666666666666555443 455666666777788887777655422110 00112234
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+-++.+..-+++|..|.+.|-+++...
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 456666667778888888888877654
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.32 E-value=5.6e+02 Score=24.86 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=40.1
Q ss_pred HHhcCCHHHHHHHHHHhhhC------------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChH
Q 046930 736 YCKFGQLEEAFKFLHDLKIN------------CLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFL 797 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (965)
+...|+..+|+..++.-... .-.|.+.....++..| ..+++++|.+.+.++.+.|..|...
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH
Confidence 45566766666666554321 1245555566666655 6678899999999988888888543
No 480
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=28.07 E-value=6.4e+02 Score=25.48 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHhHHH
Q 046930 174 DTVSYTILLDGFSK-EGTIEKAVGILNKMIEDR--LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL-GLVADEFVYA 249 (965)
Q Consensus 174 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~ 249 (965)
|..+...+++.... .+..-.|.--+-..+... ..++..+...++..++..+++.+-.+++...... +...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Q ss_pred HHHHHHHhcCCHhHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHHhcC
Q 046930 250 TLIDGVCRRGDLDCAFRLLED-----MEKKGIKPSIVTYNTIINGLCKVG 294 (965)
Q Consensus 250 ~l~~~~~~~g~~~~A~~~~~~-----~~~~g~~~~~~~~~~l~~~~~~~g 294 (965)
.+|......|+..-..++..+ +.+.|+..+...-..+-..+.+.|
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.31 E-value=7.8e+02 Score=26.21 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=17.4
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHhcC
Q 046930 801 YLVKGLC--TKGRMEEARSILREMLQSK 826 (965)
Q Consensus 801 ~l~~~~~--~~g~~~eA~~~~~~~~~~~ 826 (965)
.+.++.. ..|+++.|+..+-++++.-
T Consensus 249 l~~na~rr~~~~ry~da~~r~yR~~e~~ 276 (380)
T TIGR02710 249 LLANAERRATQGRYDDAAARLYRALELI 276 (380)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3444444 5899999888777776643
No 482
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.24 E-value=1.3e+02 Score=30.21 Aligned_cols=38 Identities=26% Similarity=0.512 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046930 247 VYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYN 284 (965)
Q Consensus 247 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 284 (965)
.|+..|....+.||+++|++++++..+.|..--..++.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 45577777778888888888888888777664344443
No 483
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.16 E-value=1.3e+02 Score=18.53 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 100 PELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
++.|..+|++.+.. .|++.+|..
T Consensus 3 ~dRAR~IyeR~v~~---hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLV---HPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHh---CCCchHHHH
Confidence 45666666666653 355555543
No 484
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=26.39 E-value=2.5e+02 Score=30.62 Aligned_cols=81 Identities=6% Similarity=-0.063 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhH
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG---NMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELA 103 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 103 (965)
...|+..|..++... +...+.+...+.++++++ +.-.|+.---.+++.+ |....++..+.+++...+++.+|
T Consensus 390 ~~~~i~~~s~a~q~~--~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln---~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYV--PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLN---PSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHHHHhhhc--cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCC---hHHHHHHHHHHHHHHHHhhHHHh
Confidence 345666666666543 445556666666666643 2223333333455555 56666777777777777888877
Q ss_pred HHHHHHHHH
Q 046930 104 IGFFENAIS 112 (965)
Q Consensus 104 ~~~~~~~~~ 112 (965)
++....+..
T Consensus 465 l~~~~alq~ 473 (758)
T KOG1310|consen 465 LSCHWALQM 473 (758)
T ss_pred hhhHHHHhh
Confidence 777766554
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.35 E-value=4.2e+02 Score=22.81 Aligned_cols=74 Identities=9% Similarity=0.058 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 707 LLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFL 785 (965)
Q Consensus 707 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 785 (965)
++++++.|..... .+.|+.-...-+.---.+++ ..++|..|...|+-.. ..-|...+..+...|++.+|.++|+
T Consensus 49 Lerc~~~f~~~~~--YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 49 LERCIRYFEDDER--YKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhhhhhh--hcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
No 486
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.94 E-value=3.9e+02 Score=22.26 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=18.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVL 719 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (965)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466666677777777777777776665
No 487
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.93 E-value=1.7e+02 Score=29.55 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 046930 172 KPDTVS-YTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITY 213 (965)
Q Consensus 172 ~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 213 (965)
.||..+ |+..|....+.||+++|+.+++++.+.|..--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 355444 568888888888888888888888888766434444
No 488
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.82 E-value=6.8e+02 Score=25.02 Aligned_cols=25 Identities=20% Similarity=0.172 Sum_probs=14.5
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHH
Q 046930 244 DEFVYATLIDGVCRRGDLDCAFRLL 268 (965)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~A~~~~ 268 (965)
++..+..+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455556666666777766666555
No 489
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=25.79 E-value=9.9e+02 Score=26.91 Aligned_cols=92 Identities=16% Similarity=0.026 Sum_probs=60.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH------HHHHH
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS------LVIAL 130 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------l~~~~ 130 (965)
+...+....+.-.+...+..+ |.++.++..++.+....|....+...+...-..- .+.+...... +.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 77 LAPLADSTLAFLAKRIPLSVN---PENCPAVQNLAAALELDGLQFLALADISEIAEWL-SPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred ccccccchhHHHHHhhhHhcC---cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CcchHHHHhhHHHHHHHHHHH
Confidence 345566667777788888877 7778888888888888887777777776633322 2334333222 36666
Q ss_pred HhcCChhHHHHHHHHHHHCCCc
Q 046930 131 CMLGRVNEVNELFVRMESEGLK 152 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~ 152 (965)
...|+..++.....+.....+.
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhh
Confidence 6677777777777766655443
No 490
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=25.79 E-value=4.3e+02 Score=22.69 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 193 KAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+..+.++....-++.|++......++++.+.+++..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44455555555566666666666777777777777777777666543
No 491
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.77 E-value=70 Score=24.37 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=15.0
Q ss_pred hhccchHHHHHHHHHHHhc
Q 046930 941 FCSKGELQKANKLMKEMLS 959 (965)
Q Consensus 941 ~~~~g~~~~A~~~~~~~~~ 959 (965)
+-+.|++++|+.+|+++.+
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 8888999888888877654
No 492
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=25.65 E-value=77 Score=27.29 Aligned_cols=29 Identities=17% Similarity=0.435 Sum_probs=18.5
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046930 258 RGDLDCAFRLLEDMEKKGIKPSIVTYNTIIN 288 (965)
Q Consensus 258 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 288 (965)
.|.-..|..+|++|+++|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 35666677777777777777664 444443
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.62 E-value=5.5e+02 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=16.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 046930 386 MIDGYCKLGRIEEALEIFDELRR 408 (965)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~ 408 (965)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34457777777777777777666
No 494
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.54 E-value=84 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=20.2
Q ss_pred hHHHHh-hhccchHHHHHHHHHHHhcc
Q 046930 935 YSKVAS-FCSKGELQKANKLMKEMLSS 960 (965)
Q Consensus 935 ~~~~~~-~~~~g~~~~A~~~~~~~~~~ 960 (965)
+...+. +-+.|+|++|+.+|+++++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 333344 88899999999999998764
No 495
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=25.52 E-value=23 Score=39.69 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHH
Q 046930 25 NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAI 104 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 104 (965)
|++..+-+.|........-+.-......-++++...|++..|..+++.+.................+......|+++.|+
T Consensus 2 ~~~~~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al 81 (536)
T PF04348_consen 2 GDPRQAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQAL 81 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444444444433333212223334455678899999999999999987443311233344445566777889999999
Q ss_pred HHHHHHHHcCCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 105 GFFENAISLGALKPNVV--SYTSLVIALCMLGRVNEVNELFVRM 146 (965)
Q Consensus 105 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~ 146 (965)
+.+....... +++... .+.....++...|++-+|...+-.+
T Consensus 82 ~~L~~~~~~~-l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 82 SLLNAQDLWQ-LPPEQQARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp --------------------------------------------
T ss_pred HHhccCCccc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9998633222 344333 3335556777777777776654443
No 496
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=24.93 E-value=2.7e+02 Score=22.01 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=15.5
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046930 258 RGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGR 295 (965)
Q Consensus 258 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 295 (965)
.|+.+.|.+++..+. +|. ..|...+.++...|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-QKE----GWFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCc
Confidence 355555555555555 321 134444444444443
No 497
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.92 E-value=3.4e+02 Score=24.08 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=33.8
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046930 234 KKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGR 295 (965)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 295 (965)
..+.+.|...+. ....++..+...++.-.|..+++++.+.++..+..|-...+..+...|-
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334444544332 3334455555555666677777777666665555555555566666554
No 498
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=24.56 E-value=6.9e+02 Score=24.66 Aligned_cols=178 Identities=10% Similarity=0.064 Sum_probs=84.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-C-CcccHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 046930 627 IVAALCREGYVNKALDLCAFAKNK-G-ITVNIVTYNTVIHSLCR-QGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCK 703 (965)
Q Consensus 627 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 703 (965)
++....+.+++++.....+.+.+. + ...+..-.|.|..+|-. .|....+..++..+....-.....-...++..|.+
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~yr~ 86 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKEYRG 86 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHHHHH
Confidence 445556677888888877777664 3 34555555555555532 35556666666654432100001111222322221
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHH---hcCCHHH
Q 046930 704 EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDG-YCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFC---QKGDMEG 779 (965)
Q Consensus 704 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~ 779 (965)
. --++-..+.++++ .+++- +...-.-.++.-.|.+|.. ..|..+...-. +..-.++
T Consensus 87 k-ie~EL~~iC~eil------------~lid~~Lip~~~~~eskVFy~KmKG-------DYyRYlaE~~~~~e~~~~~~~ 146 (244)
T smart00101 87 K-IETELSKICDGIL------------KLLESHLIPSASAAESKVFYLKMKG-------DYHRYLAEFKTGAERKEAAEN 146 (244)
T ss_pred H-HHHHHHHHHHHHH------------HHHHHhCccccCcHHHHHHHHHHHH-------HHHHHHHHHcCcHHHHHHHHH
Confidence 1 0011111111111 11111 1111111344444444432 22333333210 1112567
Q ss_pred HHHHHHHhHh---CCCCCChHHHHHHHHHH----h-cCCCHHHHHHHHHHHHh
Q 046930 780 ALGFFLDFNT---KGVSPDFLGFLYLVKGL----C-TKGRMEEARSILREMLQ 824 (965)
Q Consensus 780 A~~~~~~~~~---~~~~p~~~~~~~l~~~~----~-~~g~~~eA~~~~~~~~~ 824 (965)
|.+.|+.+.+ ..++|.++....|+-.+ + -.++.++|.++.+++.+
T Consensus 147 a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 147 TLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887754 25888887754444332 2 47999999998888776
No 499
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.06 E-value=55 Score=24.94 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=17.0
Q ss_pred hhccchHHHHHHHHHHHhcc
Q 046930 941 FCSKGELQKANKLMKEMLSS 960 (965)
Q Consensus 941 ~~~~g~~~~A~~~~~~~~~~ 960 (965)
--..|+|++|+++|..+|+.
T Consensus 16 eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHH
Confidence 45679999999999998874
No 500
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.99 E-value=2.4e+02 Score=19.19 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046930 251 LIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIIN 288 (965)
Q Consensus 251 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 288 (965)
++....+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Done!