Query 046930
Match_columns 965
No_of_seqs 624 out of 4172
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 10:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.3E-38 2.2E-42 362.6 41.5 487 173-824 82-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-37 5.1E-42 359.5 42.4 515 58-806 64-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-28 4.3E-33 267.2 47.1 377 17-427 6-386 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.8E-28 2E-32 261.9 47.2 360 53-443 5-368 (388)
5 1xi4_A Clathrin heavy chain; a 99.9 3.8E-20 1.3E-24 212.0 74.5 754 11-865 483-1379(1630)
6 1xi4_A Clathrin heavy chain; a 99.9 1.3E-20 4.3E-25 215.9 69.2 759 3-867 354-1247(1630)
7 2gw1_A Mitochondrial precursor 99.9 4.2E-24 1.4E-28 241.9 40.6 232 620-871 236-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.6E-24 2.3E-28 240.3 38.2 432 9-455 5-488 (514)
9 4g26_A Pentatricopeptide repea 99.9 3.4E-25 1.2E-29 242.0 24.1 189 621-809 26-223 (501)
10 3fp2_A TPR repeat-containing p 99.9 2.5E-23 8.4E-28 236.9 35.7 438 345-964 25-495 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.6E-22 5.5E-27 224.4 40.8 345 28-423 9-372 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 9.6E-23 3.3E-27 226.1 37.6 330 6-387 22-370 (450)
13 3fp2_A TPR repeat-containing p 99.9 1.6E-22 5.4E-27 230.2 40.1 334 47-443 25-373 (537)
14 4g26_A Pentatricopeptide repea 99.9 3.1E-24 1.1E-28 234.5 23.8 206 638-853 7-222 (501)
15 3ieg_A DNAJ homolog subfamily 99.9 4.8E-20 1.6E-24 197.5 41.9 333 47-425 3-351 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 1.7E-19 5.8E-24 193.2 38.3 324 9-392 2-352 (359)
17 2xm6_A Protein corresponding t 99.9 1.1E-17 3.9E-22 186.4 49.3 364 28-444 24-433 (490)
18 2xm6_A Protein corresponding t 99.9 7.2E-18 2.5E-22 188.0 47.4 381 8-442 37-466 (490)
19 3hym_B Cell division cycle pro 99.9 4.3E-19 1.5E-23 187.5 33.6 285 5-320 17-314 (330)
20 3hym_B Cell division cycle pro 99.8 1.3E-18 4.4E-23 183.8 32.8 300 44-429 19-320 (330)
21 4g1t_A Interferon-induced prot 99.8 1.1E-18 3.7E-23 194.7 32.2 292 621-964 136-463 (472)
22 2ooe_A Cleavage stimulation fa 99.8 7.3E-17 2.5E-21 181.9 45.0 378 34-443 2-454 (530)
23 4eqf_A PEX5-related protein; a 99.8 1.2E-18 3.9E-23 186.9 27.1 269 8-305 63-352 (365)
24 2ooe_A Cleavage stimulation fa 99.8 8.1E-17 2.8E-21 181.5 42.6 426 69-550 1-494 (530)
25 1fch_A Peroxisomal targeting s 99.8 8.4E-19 2.9E-23 188.5 24.2 308 22-372 36-357 (368)
26 4g1t_A Interferon-induced prot 99.8 1.9E-17 6.7E-22 184.5 34.3 222 46-291 50-292 (472)
27 1fch_A Peroxisomal targeting s 99.8 9.7E-18 3.3E-22 180.1 30.5 265 10-304 64-354 (368)
28 3cv0_A Peroxisome targeting si 99.8 1.1E-17 3.7E-22 176.4 29.2 268 8-306 19-312 (327)
29 1b89_A Protein (clathrin heavy 99.8 2.4E-18 8.2E-23 177.4 20.7 306 58-425 14-339 (449)
30 4eqf_A PEX5-related protein; a 99.8 2.6E-18 9E-23 184.1 22.1 263 595-866 74-352 (365)
31 1b89_A Protein (clathrin heavy 99.8 2.1E-18 7.3E-23 177.7 15.2 309 95-466 14-329 (449)
32 3mkr_A Coatomer subunit epsilo 99.8 1.5E-16 5.2E-21 162.2 27.7 274 561-864 7-288 (291)
33 2h6f_A Protein farnesyltransfe 99.8 1.8E-16 6.3E-21 166.9 27.4 253 7-292 94-365 (382)
34 3cv0_A Peroxisome targeting si 99.8 8.3E-17 2.8E-21 169.6 25.0 282 46-373 20-314 (327)
35 2pl2_A Hypothetical conserved 99.7 1.2E-16 4E-21 155.7 22.3 200 44-272 2-212 (217)
36 3mkr_A Coatomer subunit epsilo 99.7 5.8E-16 2E-20 157.9 27.7 259 183-451 7-270 (291)
37 2pl2_A Hypothetical conserved 99.7 1.4E-16 4.9E-21 155.1 21.5 200 7-237 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.7 1.8E-15 6E-20 153.1 24.6 230 8-274 3-236 (258)
39 3e4b_A ALGK; tetratricopeptide 99.7 6.5E-15 2.2E-19 160.9 30.4 223 620-869 175-420 (452)
40 3u4t_A TPR repeat-containing p 99.7 5.8E-15 2E-19 150.6 26.4 253 9-289 2-264 (272)
41 3e4b_A ALGK; tetratricopeptide 99.7 2.4E-15 8.3E-20 164.3 22.9 349 16-444 9-388 (452)
42 2h6f_A Protein farnesyltransfe 99.7 6.4E-15 2.2E-19 155.1 25.0 218 47-294 97-323 (382)
43 3uq3_A Heat shock protein STI1 99.7 7.9E-15 2.7E-19 148.2 23.3 223 621-870 5-236 (258)
44 2ho1_A Type 4 fimbrial biogene 99.7 3.3E-14 1.1E-18 143.0 26.9 203 47-275 37-239 (252)
45 2q7f_A YRRB protein; TPR, prot 99.7 6.2E-15 2.1E-19 147.4 21.3 201 46-274 22-222 (243)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.7E-15 5.9E-20 154.8 17.5 249 22-303 16-269 (275)
47 1ouv_A Conserved hypothetical 99.7 7.1E-14 2.4E-18 142.3 29.1 226 618-871 3-252 (273)
48 2vq2_A PILW, putative fimbrial 99.6 5.2E-14 1.8E-18 138.7 26.8 205 7-238 5-210 (225)
49 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-14 4E-19 145.4 22.2 214 8-252 21-234 (243)
50 2ho1_A Type 4 fimbrial biogene 99.6 7.4E-14 2.5E-18 140.4 27.8 203 10-240 37-239 (252)
51 1ouv_A Conserved hypothetical 99.6 2.2E-13 7.6E-18 138.6 31.5 226 7-275 3-252 (273)
52 3u4t_A TPR repeat-containing p 99.6 1.4E-14 4.9E-19 147.6 22.0 255 47-353 3-263 (272)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-14 4.5E-19 148.2 21.5 224 619-864 41-269 (275)
54 2vq2_A PILW, putative fimbrial 99.6 1.1E-13 3.6E-18 136.5 26.9 206 44-274 5-211 (225)
55 3vtx_A MAMA; tetratricopeptide 99.6 1.5E-13 5.3E-18 130.1 22.2 167 9-204 4-170 (184)
56 3vtx_A MAMA; tetratricopeptide 99.6 1.9E-13 6.6E-18 129.4 22.9 167 46-239 4-170 (184)
57 3spa_A Mtrpol, DNA-directed RN 99.6 3.3E-15 1.1E-19 166.5 10.6 151 655-810 126-286 (1134)
58 2ond_A Cleavage stimulation fa 99.6 7.2E-13 2.5E-17 137.1 27.7 239 7-275 5-271 (308)
59 3sf4_A G-protein-signaling mod 99.6 5.4E-14 1.9E-18 153.1 20.0 279 8-303 7-330 (406)
60 3sf4_A G-protein-signaling mod 99.6 9.4E-14 3.2E-18 151.2 21.9 308 378-813 7-364 (406)
61 4e6h_A MRNA 3'-END-processing 99.6 3.8E-11 1.3E-15 134.9 42.8 433 26-515 47-572 (679)
62 3spa_A Mtrpol, DNA-directed RN 99.6 5.2E-15 1.8E-19 164.9 10.7 152 173-324 125-286 (1134)
63 4a1s_A PINS, partner of inscut 99.6 7.7E-14 2.6E-18 152.1 19.8 241 622-870 87-372 (411)
64 3ro2_A PINS homolog, G-protein 99.6 7.4E-14 2.5E-18 147.6 18.3 285 621-963 5-335 (338)
65 4a1s_A PINS, partner of inscut 99.5 8.6E-14 2.9E-18 151.7 18.5 246 12-274 50-332 (411)
66 4abn_A Tetratricopeptide repea 99.5 1.5E-13 5.2E-18 151.1 20.1 215 27-271 84-318 (474)
67 4abn_A Tetratricopeptide repea 99.5 2.9E-13 1E-17 148.8 22.4 215 62-306 83-318 (474)
68 3ulq_A Response regulator aspa 99.5 4E-13 1.4E-17 144.4 23.1 238 661-963 108-371 (383)
69 4e6h_A MRNA 3'-END-processing 99.5 2E-10 6.8E-15 129.1 44.6 466 61-564 46-585 (679)
70 3ro2_A PINS homolog, G-protein 99.5 2.3E-13 7.7E-18 143.8 18.8 246 12-274 7-292 (338)
71 3nf1_A KLC 1, kinesin light ch 99.5 1.4E-13 4.9E-18 143.4 16.7 257 692-964 28-311 (311)
72 3ulq_A Response regulator aspa 99.5 4.3E-12 1.5E-16 136.3 26.3 202 621-825 143-368 (383)
73 2ond_A Cleavage stimulation fa 99.5 8.6E-12 3E-16 129.0 27.2 212 64-303 33-264 (308)
74 4gyw_A UDP-N-acetylglucosamine 99.5 7.5E-13 2.6E-17 150.8 20.7 170 5-203 4-173 (723)
75 3nf1_A KLC 1, kinesin light ch 99.5 1.8E-13 6E-18 142.8 13.7 256 4-274 21-307 (311)
76 4gyw_A UDP-N-acetylglucosamine 99.5 1.5E-12 5E-17 148.4 21.1 167 45-238 7-173 (723)
77 4i17_A Hypothetical protein; T 99.5 5.2E-12 1.8E-16 124.4 21.9 209 7-252 4-221 (228)
78 3q15_A PSP28, response regulat 99.4 5.9E-11 2E-15 127.0 30.1 202 621-825 141-365 (378)
79 4i17_A Hypothetical protein; T 99.4 1.7E-11 5.7E-16 120.7 21.6 194 618-824 4-208 (228)
80 3as5_A MAMA; tetratricopeptide 99.4 2.9E-11 1E-15 114.5 20.9 163 49-238 10-172 (186)
81 3as5_A MAMA; tetratricopeptide 99.4 1.7E-11 5.8E-16 116.2 19.1 168 9-205 7-174 (186)
82 3q15_A PSP28, response regulat 99.4 2.9E-11 9.8E-16 129.5 23.0 230 624-868 104-363 (378)
83 3qky_A Outer membrane assembly 99.4 1.4E-11 4.8E-16 124.1 19.0 180 7-207 12-227 (261)
84 1hz4_A MALT regulatory protein 99.4 6E-10 2.1E-14 119.1 32.2 208 49-274 16-244 (373)
85 1hz4_A MALT regulatory protein 99.4 2.1E-10 7.3E-15 122.6 27.5 269 595-869 23-321 (373)
86 1qqe_A Vesicular transport pro 99.3 3.1E-11 1.1E-15 123.5 19.2 206 636-867 32-266 (292)
87 3edt_B KLC 2, kinesin light ch 99.3 2.7E-11 9.3E-16 124.0 18.0 206 618-825 40-281 (283)
88 3urz_A Uncharacterized protein 99.3 6.1E-11 2.1E-15 114.2 18.5 57 90-148 60-116 (208)
89 3dra_A Protein farnesyltransfe 99.3 1.6E-09 5.5E-14 108.8 29.3 237 22-287 44-300 (306)
90 3urz_A Uncharacterized protein 99.3 4.4E-11 1.5E-15 115.2 17.0 175 11-217 5-197 (208)
91 3edt_B KLC 2, kinesin light ch 99.3 1.7E-11 5.8E-16 125.5 14.9 239 22-274 12-281 (283)
92 4ga2_A E3 SUMO-protein ligase 99.3 8.5E-12 2.9E-16 112.6 10.9 146 16-190 3-149 (150)
93 3qky_A Outer membrane assembly 99.3 1.2E-10 4.1E-15 117.3 20.0 108 44-151 12-128 (261)
94 2pzi_A Probable serine/threoni 99.3 2.7E-11 9.2E-16 139.5 17.0 170 23-222 403-580 (681)
95 4ga2_A E3 SUMO-protein ligase 99.3 1.1E-11 3.6E-16 112.0 10.7 146 53-225 3-149 (150)
96 1qqe_A Vesicular transport pro 99.3 1.6E-10 5.5E-15 118.2 19.3 200 623-824 39-268 (292)
97 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.9E-10 9.8E-15 111.2 20.0 105 9-114 3-126 (225)
98 2yhc_A BAMD, UPF0169 lipoprote 99.2 7E-10 2.4E-14 108.4 20.2 191 46-275 3-214 (225)
99 2r5s_A Uncharacterized protein 99.2 1.5E-10 5.3E-15 108.0 14.6 169 7-203 3-172 (176)
100 2pzi_A Probable serine/threoni 99.2 9.8E-11 3.3E-15 134.9 15.8 174 58-260 402-583 (681)
101 2r5s_A Uncharacterized protein 99.2 1.7E-10 5.7E-15 107.8 14.2 164 48-238 7-172 (176)
102 3mv2_B Coatomer subunit epsilo 99.2 2.4E-09 8.3E-14 105.8 22.3 242 561-824 21-281 (310)
103 3qou_A Protein YBBN; thioredox 99.2 5.8E-10 2E-14 113.4 17.9 165 45-237 115-282 (287)
104 3dra_A Protein farnesyltransfe 99.2 6.1E-09 2.1E-13 104.6 24.9 231 52-338 37-286 (306)
105 4gco_A Protein STI-1; structur 99.2 4.3E-10 1.5E-14 97.5 13.8 114 7-128 10-123 (126)
106 2fo7_A Synthetic consensus TPR 99.1 2E-09 7E-14 95.3 17.6 90 53-147 7-96 (136)
107 2fo7_A Synthetic consensus TPR 99.1 1.7E-09 6E-14 95.7 17.1 132 11-150 2-133 (136)
108 3rjv_A Putative SEL1 repeat pr 99.1 3.9E-09 1.3E-13 101.7 20.6 175 28-240 3-198 (212)
109 3qou_A Protein YBBN; thioredox 99.1 8.8E-10 3E-14 112.1 16.7 168 81-273 114-283 (287)
110 3rjv_A Putative SEL1 repeat pr 99.1 6.7E-09 2.3E-13 100.0 21.4 174 638-825 3-197 (212)
111 3q7a_A Farnesyltransferase alp 99.1 4.4E-08 1.5E-12 99.1 27.5 246 12-287 56-344 (349)
112 2vsy_A XCC0866; transferase, g 99.1 1.5E-09 5E-14 123.3 17.8 153 25-205 3-158 (568)
113 4gco_A Protein STI-1; structur 99.1 1.7E-09 5.8E-14 93.7 14.0 97 48-149 14-110 (126)
114 3mv2_B Coatomer subunit epsilo 99.1 1.2E-07 4E-12 93.9 28.0 188 620-825 99-305 (310)
115 2ifu_A Gamma-SNAP; membrane fu 99.1 1.6E-09 5.3E-14 111.7 15.2 204 634-863 29-254 (307)
116 2vsy_A XCC0866; transferase, g 99.1 2.7E-09 9.2E-14 121.0 18.2 154 60-240 2-158 (568)
117 3gyz_A Chaperone protein IPGC; 99.0 1.5E-09 5E-14 97.0 12.3 101 45-150 34-134 (151)
118 2uy1_A Cleavage stimulation fa 99.0 2.7E-07 9.1E-12 100.9 31.7 391 24-477 7-412 (493)
119 3gyz_A Chaperone protein IPGC; 99.0 7.3E-09 2.5E-13 92.4 14.3 102 7-114 33-134 (151)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.1E-08 7.1E-13 97.1 17.7 130 11-151 7-152 (213)
121 4f3v_A ESX-1 secretion system 98.9 5.1E-09 1.7E-13 102.1 12.7 190 24-239 19-237 (282)
122 2ifu_A Gamma-SNAP; membrane fu 98.9 2.1E-08 7.1E-13 103.2 17.9 198 23-237 3-222 (307)
123 3q7a_A Farnesyltransferase alp 98.9 1.1E-07 3.9E-12 96.1 22.7 249 51-339 58-331 (349)
124 2vgx_A Chaperone SYCD; alterna 98.9 2.6E-09 9.1E-14 95.7 9.5 112 32-150 8-119 (148)
125 2c2l_A CHIP, carboxy terminus 98.9 1.6E-09 5.4E-14 109.7 8.8 96 48-148 5-100 (281)
126 3dss_A Geranylgeranyl transfer 98.9 6.2E-07 2.1E-11 90.4 27.3 223 22-274 40-304 (331)
127 2lni_A Stress-induced-phosphop 98.9 1.9E-08 6.4E-13 88.7 14.5 124 4-135 10-133 (133)
128 4f3v_A ESX-1 secretion system 98.9 8.5E-09 2.9E-13 100.6 13.0 197 59-286 18-247 (282)
129 2vgx_A Chaperone SYCD; alterna 98.9 6.9E-09 2.3E-13 93.0 11.5 115 65-205 5-119 (148)
130 1a17_A Serine/threonine protei 98.9 2.8E-08 9.6E-13 91.6 16.0 132 9-148 12-145 (166)
131 3u3w_A Transcriptional activat 98.9 1.6E-07 5.6E-12 95.9 23.1 167 696-868 80-264 (293)
132 2c2l_A CHIP, carboxy terminus 98.9 2E-08 6.7E-13 101.6 15.9 102 7-114 1-102 (281)
133 2vyi_A SGTA protein; chaperone 98.9 2.4E-08 8.3E-13 87.6 14.5 123 6-136 8-130 (131)
134 1a17_A Serine/threonine protei 98.9 4.1E-08 1.4E-12 90.5 16.5 131 47-203 13-145 (166)
135 1p5q_A FKBP52, FK506-binding p 98.9 3.3E-09 1.1E-13 110.5 9.6 152 24-203 126-293 (336)
136 2e2e_A Formate-dependent nitri 98.9 1.6E-08 5.3E-13 94.5 13.3 122 22-150 21-145 (177)
137 2uy1_A Cleavage stimulation fa 98.9 3E-06 1E-10 92.7 33.0 363 359-824 28-412 (493)
138 1p5q_A FKBP52, FK506-binding p 98.9 2.3E-08 7.8E-13 104.0 15.5 136 7-148 144-293 (336)
139 3dss_A Geranylgeranyl transfer 98.9 2.4E-06 8.1E-11 86.2 28.9 191 56-274 38-267 (331)
140 2xcb_A PCRH, regulatory protei 98.8 2E-08 6.8E-13 89.5 12.1 102 7-114 15-116 (142)
141 2qfc_A PLCR protein; TPR, HTH, 98.8 6.7E-08 2.3E-12 98.8 17.7 173 12-203 77-265 (293)
142 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.2E-07 4.3E-12 91.6 18.5 146 48-207 7-153 (213)
143 2lni_A Stress-induced-phosphop 98.8 4.8E-08 1.6E-12 85.9 14.3 120 44-189 13-132 (133)
144 3upv_A Heat shock protein STI1 98.8 4.7E-08 1.6E-12 85.0 13.7 98 47-149 4-101 (126)
145 1na0_A Designed protein CTPR3; 98.8 9.7E-08 3.3E-12 82.8 15.6 116 10-133 9-124 (125)
146 2fbn_A 70 kDa peptidylprolyl i 98.8 6.3E-09 2.2E-13 99.3 8.2 151 24-202 17-184 (198)
147 3u3w_A Transcriptional activat 98.8 1.9E-07 6.6E-12 95.3 19.9 163 662-824 81-265 (293)
148 2e2e_A Formate-dependent nitri 98.8 3.6E-08 1.2E-12 92.0 13.0 125 57-207 20-147 (177)
149 2qfc_A PLCR protein; TPR, HTH, 98.8 1.4E-07 4.9E-12 96.3 18.6 168 657-824 76-265 (293)
150 3upv_A Heat shock protein STI1 98.8 6.5E-08 2.2E-12 84.1 13.8 102 7-114 1-102 (126)
151 4gcn_A Protein STI-1; structur 98.8 4.3E-08 1.5E-12 85.0 12.5 100 47-149 8-112 (127)
152 2vyi_A SGTA protein; chaperone 98.8 5.4E-08 1.8E-12 85.3 13.2 121 45-191 10-130 (131)
153 2xcb_A PCRH, regulatory protei 98.8 1.9E-08 6.4E-13 89.7 10.0 100 45-149 16-115 (142)
154 1na0_A Designed protein CTPR3; 98.8 1.9E-07 6.6E-12 80.8 15.6 99 47-150 9-107 (125)
155 3sz7_A HSC70 cochaperone (SGT) 98.7 1.2E-07 4.1E-12 87.0 14.2 110 7-124 8-117 (164)
156 4gcn_A Protein STI-1; structur 98.7 9.2E-08 3.1E-12 82.9 12.4 113 7-125 5-121 (127)
157 1hxi_A PEX5, peroxisome target 98.7 5.9E-08 2E-12 83.2 11.1 96 49-149 19-114 (121)
158 3q49_B STIP1 homology and U bo 98.7 1.7E-07 5.7E-12 83.0 13.9 101 44-149 6-106 (137)
159 1elw_A TPR1-domain of HOP; HOP 98.7 3.4E-07 1.2E-11 78.3 14.8 112 10-129 4-115 (118)
160 1elw_A TPR1-domain of HOP; HOP 98.7 4E-07 1.4E-11 77.8 15.3 100 46-150 3-102 (118)
161 2fbn_A 70 kDa peptidylprolyl i 98.7 1.1E-07 3.8E-12 90.5 12.8 135 9-149 37-186 (198)
162 3q49_B STIP1 homology and U bo 98.7 1.4E-07 4.9E-12 83.4 12.5 103 6-114 5-107 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.7 2.4E-07 8.4E-12 84.9 14.2 101 45-150 9-109 (164)
164 3gw4_A Uncharacterized protein 98.7 2.4E-07 8.3E-12 88.7 14.7 162 58-238 3-175 (203)
165 2kck_A TPR repeat; tetratricop 98.7 1.5E-07 5.1E-12 79.6 11.6 98 47-149 6-106 (112)
166 3gw4_A Uncharacterized protein 98.7 2.4E-07 8.2E-12 88.7 14.2 164 22-203 3-175 (203)
167 2kck_A TPR repeat; tetratricop 98.7 2.8E-07 9.6E-12 77.9 12.7 102 7-114 3-107 (112)
168 1hxi_A PEX5, peroxisome target 98.7 1.4E-07 4.7E-12 80.9 10.7 98 11-114 18-115 (121)
169 2hr2_A Hypothetical protein; a 98.6 2.4E-07 8.3E-12 81.0 11.9 100 48-149 12-131 (159)
170 1elr_A TPR2A-domain of HOP; HO 98.6 2.4E-07 8.3E-12 81.0 11.6 117 8-130 2-122 (131)
171 2hr2_A Hypothetical protein; a 98.6 2.3E-07 7.9E-12 81.2 11.0 95 728-824 13-130 (159)
172 2dba_A Smooth muscle cell asso 98.6 5.4E-07 1.9E-11 80.9 13.9 115 7-129 25-142 (148)
173 2dba_A Smooth muscle cell asso 98.6 1.2E-06 4E-11 78.6 15.3 102 44-150 25-129 (148)
174 1elr_A TPR2A-domain of HOP; HO 98.6 2.6E-07 9.1E-12 80.8 10.6 98 47-149 4-108 (131)
175 2xev_A YBGF; tetratricopeptide 98.6 1.2E-06 4.2E-11 76.3 14.8 106 12-123 4-113 (129)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 3.7E-07 1.3E-11 99.4 13.6 136 7-148 265-414 (457)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 6.7E-08 2.3E-12 105.3 7.6 151 24-202 247-413 (457)
178 2xev_A YBGF; tetratricopeptide 98.6 1.5E-06 5.1E-11 75.7 14.7 100 49-150 4-106 (129)
179 3rkv_A Putative peptidylprolyl 98.5 3.7E-07 1.3E-11 83.5 11.1 105 10-120 11-131 (162)
180 1wao_1 Serine/threonine protei 98.5 6.2E-08 2.1E-12 105.9 6.8 129 9-145 5-135 (477)
181 3k9i_A BH0479 protein; putativ 98.5 2E-07 6.8E-12 79.5 7.5 89 23-114 2-91 (117)
182 3rkv_A Putative peptidylprolyl 98.5 1.2E-06 4.1E-11 80.0 13.1 99 47-150 11-127 (162)
183 4b4t_Q 26S proteasome regulato 98.5 7.3E-06 2.5E-10 89.3 21.7 198 628-825 11-245 (434)
184 1dce_A Protein (RAB geranylger 98.5 4.1E-06 1.4E-10 93.1 19.4 175 58-260 39-241 (567)
185 1wao_1 Serine/threonine protei 98.5 2E-07 7E-12 101.8 8.2 124 50-199 9-134 (477)
186 3k9i_A BH0479 protein; putativ 98.5 4.2E-07 1.4E-11 77.5 8.3 90 59-150 2-91 (117)
187 1dce_A Protein (RAB geranylger 98.5 4.6E-06 1.6E-10 92.7 18.7 177 23-228 40-244 (567)
188 1ihg_A Cyclophilin 40; ppiase 98.4 1E-06 3.6E-11 92.4 12.8 125 11-141 224-362 (370)
189 2if4_A ATFKBP42; FKBP-like, al 98.4 4.3E-07 1.5E-11 94.4 9.2 135 8-150 177-329 (338)
190 1ihg_A Cyclophilin 40; ppiase 98.4 1.9E-06 6.5E-11 90.4 13.5 123 48-196 224-362 (370)
191 3n71_A Histone lysine methyltr 98.4 4.8E-07 1.6E-11 97.7 8.7 139 770-961 318-465 (490)
192 4b4t_Q 26S proteasome regulato 98.4 1.2E-05 4.2E-10 87.5 20.1 131 17-148 11-163 (434)
193 3ro3_A PINS homolog, G-protein 98.4 2.2E-06 7.5E-11 78.3 11.1 132 693-824 11-157 (164)
194 2if4_A ATFKBP42; FKBP-like, al 98.3 1.1E-06 3.9E-11 91.2 9.9 131 48-204 180-328 (338)
195 1zu2_A Mitochondrial import re 98.3 1E-06 3.6E-11 76.8 7.9 88 58-150 13-121 (158)
196 3ro3_A PINS homolog, G-protein 98.3 2.4E-06 8.3E-11 78.0 10.4 140 9-149 8-158 (164)
197 1zu2_A Mitochondrial import re 98.3 1.8E-06 6E-11 75.4 7.9 94 23-124 14-128 (158)
198 2l6j_A TPR repeat-containing p 98.3 6.4E-07 2.2E-11 75.6 4.9 95 46-145 3-103 (111)
199 2kat_A Uncharacterized protein 98.3 3E-06 1E-10 71.9 8.9 82 28-114 2-83 (115)
200 3n71_A Histone lysine methyltr 98.2 6.3E-06 2.1E-10 89.0 12.4 132 735-870 318-464 (490)
201 1na3_A Designed protein CTPR2; 98.2 1.2E-05 4.1E-10 64.5 10.3 82 47-133 9-90 (91)
202 2kat_A Uncharacterized protein 98.1 1.3E-05 4.4E-10 67.8 10.4 81 64-149 2-82 (115)
203 3ma5_A Tetratricopeptide repea 98.1 6.9E-06 2.4E-10 67.3 8.0 84 44-130 4-87 (100)
204 2l6j_A TPR repeat-containing p 98.1 4.5E-06 1.5E-10 70.2 6.5 96 9-110 3-104 (111)
205 1na3_A Designed protein CTPR2; 98.1 2.6E-05 9E-10 62.4 10.5 88 5-98 4-91 (91)
206 1klx_A Cysteine rich protein B 98.0 7.7E-05 2.6E-09 65.3 13.8 111 25-150 9-127 (138)
207 1klx_A Cysteine rich protein B 98.0 0.00011 3.8E-09 64.2 14.1 111 61-205 9-127 (138)
208 3ma5_A Tetratricopeptide repea 97.9 5.1E-05 1.7E-09 62.0 8.9 67 81-149 4-70 (100)
209 3qww_A SET and MYND domain-con 97.8 1.2E-05 4.1E-10 85.2 5.5 101 808-961 310-412 (433)
210 3qwp_A SET and MYND domain-con 97.7 5.9E-05 2E-09 80.2 7.8 107 802-961 293-401 (429)
211 3ly7_A Transcriptional activat 97.7 0.0018 6.1E-08 65.4 17.7 72 173-248 275-346 (372)
212 2kc7_A BFR218_protein; tetratr 97.6 0.00042 1.4E-08 56.3 10.2 84 52-148 5-89 (99)
213 3bee_A Putative YFRE protein; 97.6 0.00082 2.8E-08 53.3 10.9 68 44-114 3-73 (93)
214 3ly7_A Transcriptional activat 97.5 0.0014 4.8E-08 66.1 14.7 139 5-151 189-341 (372)
215 3qww_A SET and MYND domain-con 97.5 0.00045 1.5E-08 73.2 11.6 88 738-825 310-411 (433)
216 3bee_A Putative YFRE protein; 97.4 0.0019 6.6E-08 51.1 11.6 69 81-151 3-74 (93)
217 2kc7_A BFR218_protein; tetratr 97.4 0.00023 7.8E-09 57.9 6.3 85 15-113 5-90 (99)
218 3qwp_A SET and MYND domain-con 97.4 0.00097 3.3E-08 70.9 12.6 93 733-825 294-400 (429)
219 3u64_A Protein TP_0956; tetrat 97.2 0.019 6.5E-07 55.3 17.7 107 741-867 178-295 (301)
220 1pc2_A Mitochondria fission pr 97.2 0.0025 8.5E-08 54.9 10.6 91 27-123 14-108 (152)
221 1pc2_A Mitochondria fission pr 97.2 0.0028 9.7E-08 54.5 10.9 82 741-824 13-99 (152)
222 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0025 8.5E-08 52.1 9.8 78 45-124 3-84 (104)
223 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0046 1.6E-07 50.4 9.3 80 8-91 3-87 (104)
224 3u64_A Protein TP_0956; tetrat 96.9 0.058 2E-06 52.0 17.8 96 191-286 179-283 (301)
225 4h7y_A Dual specificity protei 96.8 0.019 6.4E-07 48.4 11.7 114 6-128 9-136 (161)
226 4ady_A RPN2, 26S proteasome re 96.8 1.2 4E-05 51.2 45.8 126 626-754 529-657 (963)
227 3lvg_A Clathrin heavy chain 1; 96.7 1.5E-05 5.2E-10 81.1 -8.4 284 8-323 52-363 (624)
228 3mkq_A Coatomer beta'-subunit; 96.5 0.11 3.7E-06 61.5 21.4 45 667-717 663-707 (814)
229 3mkq_A Coatomer beta'-subunit; 96.3 0.043 1.5E-06 65.0 15.6 155 631-824 609-764 (814)
230 1nzn_A CGI-135 protein, fissio 96.2 0.033 1.1E-06 46.0 9.5 84 739-824 14-102 (126)
231 1nzn_A CGI-135 protein, fissio 96.0 0.061 2.1E-06 44.4 10.3 92 26-123 16-111 (126)
232 4h7y_A Dual specificity protei 95.9 0.11 3.7E-06 43.9 11.4 107 44-155 10-129 (161)
233 3ffl_A Anaphase-promoting comp 95.9 0.039 1.3E-06 47.8 8.8 98 12-110 22-148 (167)
234 1qsa_A Protein (soluble lytic 95.6 3.3 0.00011 45.8 25.5 115 325-442 229-347 (618)
235 3lvg_A Clathrin heavy chain 1; 95.6 3.5E-05 1.2E-09 78.5 -12.4 239 174-434 53-324 (624)
236 3mkq_B Coatomer subunit alpha; 95.2 0.46 1.6E-05 42.0 13.6 101 130-271 15-115 (177)
237 3mkq_B Coatomer subunit alpha; 95.1 1.6 5.5E-05 38.6 17.8 45 632-682 16-60 (177)
238 3ffl_A Anaphase-promoting comp 94.7 0.11 3.8E-06 45.0 8.1 101 48-148 21-150 (167)
239 1wy6_A Hypothetical protein ST 94.0 0.83 2.8E-05 37.6 11.0 85 187-277 73-157 (172)
240 4b4t_P 26S proteasome regulato 93.8 2.8 9.6E-05 44.5 18.6 97 729-825 140-247 (445)
241 1y8m_A FIS1; mitochondria, unk 93.4 1.6 5.5E-05 36.7 12.2 75 43-121 35-112 (144)
242 3o48_A Mitochondria fission 1 92.9 0.68 2.3E-05 38.3 9.1 66 757-824 36-106 (134)
243 1y8m_A FIS1; mitochondria, unk 92.6 2.2 7.5E-05 35.9 11.9 65 758-824 36-105 (144)
244 3o48_A Mitochondria fission 1 92.2 1.4 4.8E-05 36.5 10.2 76 43-122 36-114 (134)
245 4b4t_P 26S proteasome regulato 92.0 10 0.00035 40.1 19.7 164 624-787 140-321 (445)
246 1wy6_A Hypothetical protein ST 91.7 5 0.00017 33.2 15.2 63 624-687 94-156 (172)
247 3txn_A 26S proteasome regulato 91.3 4.6 0.00016 41.5 15.4 132 621-753 19-166 (394)
248 4fhn_B Nucleoporin NUP120; pro 91.1 7.3 0.00025 47.4 19.7 121 21-148 822-966 (1139)
249 4gns_B Protein CSD3, chitin bi 90.8 2.7 9.2E-05 47.4 14.1 31 930-960 611-642 (754)
250 1zbp_A Hypothetical protein VP 89.8 3.5 0.00012 39.2 11.8 56 56-114 6-61 (273)
251 2ff4_A Probable regulatory pro 89.4 2 6.8E-05 44.7 11.1 88 59-148 127-233 (388)
252 4gns_B Protein CSD3, chitin bi 88.7 2 6.7E-05 48.5 11.0 54 387-440 344-397 (754)
253 4ady_A RPN2, 26S proteasome re 88.2 43 0.0015 38.7 49.2 324 178-512 233-588 (963)
254 4fhn_B Nucleoporin NUP120; pro 88.0 8.7 0.0003 46.7 17.0 168 87-263 815-989 (1139)
255 4b4t_R RPN7, 26S proteasome re 85.4 6.5 0.00022 41.4 12.4 61 693-753 133-195 (429)
256 4b4t_R RPN7, 26S proteasome re 85.1 4.4 0.00015 42.8 10.9 101 48-148 132-236 (429)
257 2ff4_A Probable regulatory pro 84.7 5.6 0.00019 41.2 11.4 72 382-453 173-249 (388)
258 4b4t_S RPN3, 26S proteasome re 83.4 4.7 0.00016 42.7 9.8 138 12-151 137-301 (523)
259 1v54_E Cytochrome C oxidase po 82.1 14 0.00048 28.7 9.2 62 360-421 25-86 (109)
260 1zbp_A Hypothetical protein VP 81.6 5 0.00017 38.1 8.3 55 22-78 8-62 (273)
261 2p58_C Putative type III secre 77.0 21 0.00071 27.6 8.6 47 735-787 49-95 (116)
262 3lpz_A GET4 (YOR164C homolog); 75.9 66 0.0022 31.9 22.3 198 259-512 10-215 (336)
263 1qsa_A Protein (soluble lytic 75.9 1E+02 0.0034 34.0 38.3 55 285-339 77-131 (618)
264 4b4t_S RPN3, 26S proteasome re 75.4 33 0.0011 36.4 13.0 84 31-114 211-300 (523)
265 2wpv_A GET4, UPF0363 protein Y 74.5 69 0.0024 31.5 22.0 26 279-304 133-158 (312)
266 2uwj_G Type III export protein 73.4 19 0.00066 27.7 7.6 48 735-788 48-95 (115)
267 2y69_E Cytochrome C oxidase su 73.3 29 0.001 28.6 9.2 62 360-421 68-129 (152)
268 1v54_E Cytochrome C oxidase po 72.8 31 0.0011 26.8 9.2 63 190-253 25-87 (109)
269 2wpv_A GET4, UPF0363 protein Y 72.7 76 0.0026 31.2 21.2 26 413-438 133-158 (312)
270 3kae_A CDC27, possible protein 70.9 34 0.0012 29.5 9.5 194 289-515 42-239 (242)
271 2p58_C Putative type III secre 66.1 44 0.0015 25.9 8.2 49 666-720 50-98 (116)
272 3esl_A Checkpoint serine/threo 65.6 36 0.0012 30.7 9.3 50 707-756 95-145 (202)
273 3ltm_A Alpha-REP4; protein eng 65.2 82 0.0028 28.7 18.1 121 655-788 63-183 (211)
274 2y69_E Cytochrome C oxidase su 64.2 59 0.002 26.9 9.2 63 190-253 68-130 (152)
275 3esl_A Checkpoint serine/threo 62.9 47 0.0016 30.0 9.5 57 669-725 92-149 (202)
276 2uwj_G Type III export protein 62.5 41 0.0014 26.0 7.5 51 665-721 48-98 (115)
277 1oyz_A Hypothetical protein YI 60.2 1.2E+02 0.0042 29.1 21.6 125 689-824 103-233 (280)
278 3txn_A 26S proteasome regulato 55.0 1.9E+02 0.0065 29.6 29.8 136 347-512 21-167 (394)
279 3ubw_A 14-3-3E, 14-3-3 protein 53.6 1.5E+02 0.0051 28.0 11.5 48 777-824 172-227 (261)
280 4a1g_A Mitotic checkpoint seri 52.9 83 0.0028 26.9 8.9 50 745-794 84-134 (152)
281 1ya0_A SMG-7 transcript varian 52.2 65 0.0022 34.3 10.3 75 52-131 157-231 (497)
282 4a1g_A Mitotic checkpoint seri 50.4 91 0.0031 26.6 8.8 50 675-724 84-134 (152)
283 3lpz_A GET4 (YOR164C homolog); 49.6 2.1E+02 0.0071 28.4 29.8 26 279-304 135-160 (336)
284 1oyz_A Hypothetical protein YI 49.4 1.8E+02 0.0063 27.8 20.2 207 45-296 35-251 (280)
285 2wvi_A Mitotic checkpoint seri 48.8 99 0.0034 26.9 8.9 51 745-795 79-130 (164)
286 2wvi_A Mitotic checkpoint seri 44.3 1.3E+02 0.0044 26.2 8.9 50 675-724 79-129 (164)
287 2d2s_A Exocyst complex compone 43.4 2E+02 0.0069 26.8 11.0 116 52-182 23-142 (235)
288 4gq2_M Nucleoporin NUP120; bet 42.8 1.1E+02 0.0039 35.9 11.4 53 89-147 815-867 (950)
289 3bge_A Predicted ATPase; struc 42.6 1.9E+02 0.0064 25.9 9.9 62 625-686 8-77 (201)
290 3iqu_A 14-3-3 protein sigma; s 41.8 2.2E+02 0.0075 26.5 10.6 170 655-824 7-204 (236)
291 2r9g_A AAA ATPase, central reg 41.2 2E+02 0.0068 25.8 11.0 64 623-687 13-84 (204)
292 3uzd_A 14-3-3 protein gamma; s 41.0 2.3E+02 0.0079 26.5 10.9 48 777-824 147-202 (248)
293 2qx5_A Nucleoporin NIC96; mRNA 39.5 4.3E+02 0.015 29.2 19.1 44 247-292 155-198 (661)
294 3ltm_A Alpha-REP4; protein eng 37.0 2.3E+02 0.008 25.4 20.8 109 173-293 93-201 (211)
295 3ctd_A Putative ATPase, AAA fa 35.2 2.6E+02 0.0087 25.4 10.5 67 621-687 32-106 (213)
296 1bpo_A Protein (clathrin); cla 33.9 2.6E+02 0.009 29.1 10.6 90 4-99 355-444 (494)
297 2r9g_A AAA ATPase, central reg 31.8 2.8E+02 0.0097 24.8 10.6 83 180-263 16-106 (204)
298 2ijq_A Hypothetical protein; s 29.9 2.5E+02 0.0084 24.3 8.3 54 57-112 42-103 (161)
299 4gq2_M Nucleoporin NUP120; bet 28.9 3.9E+02 0.013 31.4 12.9 23 349-371 844-866 (950)
300 1ya0_A SMG-7 transcript varian 28.1 2.8E+02 0.0095 29.5 10.3 79 86-187 154-232 (497)
301 4ets_A Ferric uptake regulatio 28.0 1.7E+02 0.0057 25.4 7.3 71 27-100 13-85 (162)
302 2nsz_A Programmed cell death p 27.8 1.9E+02 0.0064 23.9 7.2 62 625-687 11-74 (129)
303 3ubw_A 14-3-3E, 14-3-3 protein 27.7 3.9E+02 0.013 25.2 13.8 33 927-959 190-227 (261)
304 4aez_C MAD3, mitotic spindle c 26.2 1.1E+02 0.0036 28.2 5.7 20 732-751 156-175 (223)
305 2nsz_A Programmed cell death p 26.1 2.7E+02 0.0094 22.8 8.4 65 383-447 10-76 (129)
306 4aez_C MAD3, mitotic spindle c 25.6 1.1E+02 0.0037 28.1 5.7 47 778-824 131-178 (223)
307 3uzd_A 14-3-3 protein gamma; s 24.5 4.4E+02 0.015 24.7 12.4 32 927-958 165-201 (248)
308 1bpo_A Protein (clathrin); cla 24.4 2.4E+02 0.0081 29.4 8.4 16 496-511 468-483 (494)
309 2ion_A PDCD4, programmed cell 24.2 2.2E+02 0.0074 24.4 7.1 65 383-447 12-78 (152)
310 2crb_A Nuclear receptor bindin 24.0 1.1E+02 0.0037 23.2 4.2 26 48-73 16-41 (97)
311 2crb_A Nuclear receptor bindin 23.6 1.1E+02 0.0038 23.2 4.3 27 86-112 17-43 (97)
312 2d2s_A Exocyst complex compone 23.2 4.1E+02 0.014 24.7 9.4 90 181-273 24-119 (235)
313 4a5x_A MITD1, MIT domain-conta 23.0 49 0.0017 25.0 2.5 20 941-960 26-45 (86)
314 3bu8_A Telomeric repeat-bindin 22.8 2.6E+02 0.0088 25.4 7.2 77 361-437 88-171 (235)
315 2b7e_A PRE-mRNA processing pro 22.1 90 0.0031 21.5 3.3 40 500-539 2-42 (59)
316 2ion_A PDCD4, programmed cell 21.6 1.8E+02 0.0062 24.8 6.1 63 624-687 12-76 (152)
317 2fe3_A Peroxide operon regulat 21.6 3.6E+02 0.012 22.6 8.1 62 35-99 10-71 (145)
318 3ctd_A Putative ATPase, AAA fa 21.6 4.5E+02 0.016 23.8 9.9 72 177-248 34-113 (213)
319 2br9_A 14-3-3E, 14-3-3 protein 21.5 4.9E+02 0.017 24.1 12.2 33 927-959 164-201 (234)
320 3ltj_A Alpharep-4; protein eng 20.9 4.3E+02 0.015 23.3 21.3 108 173-292 88-195 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-38 Score=362.62 Aligned_cols=487 Identities=11% Similarity=-0.006 Sum_probs=368.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
+++..|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56778888888888888888888888888854 457788888888888888888888888887644 56778888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHH
Q 046930 253 DGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILET 332 (965)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (965)
.+|.+.|++++|.++|+++... +.. ...+...+..+ .+.+.+..+|..++.+|.+.|++++|++.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLLMQD------GGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTT----C---------------CCC------SSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCc----ccc-----ccccccccccc------cccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888888753221 100 11111111111 12345678888888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046930 333 KQRLEEAGIQMDIVMCNILIKALFMVGALEDAR--AL-YQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM 409 (965)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (965)
|+++.+.++ .+...+..+...+...+..+.+. .+ +..+...+..+...++..++..|.+.|++++|+++|+++.+.
T Consensus 223 ~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 223 YKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 999888753 34556666655444333222221 11 444444443344556677788888899999999999888776
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHH
Q 046930 410 SISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICND 489 (965)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (965)
+++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+.. ++..
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~ 344 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLD-----------------------------------VYPL 344 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCT-----------------------------------THHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHH-----------------------------------HHHH
Confidence 5788899999999999999999999999988753 12222 3334
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcH
Q 046930 490 VISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDV 569 (965)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (965)
++..+.+.|++++|..+++.+.+..
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------------------------- 369 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRH------------------------------------------------------- 369 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhC-------------------------------------------------------
Confidence 4455677788888888887776522
Q ss_pred HHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046930 570 TNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKN 649 (965)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 649 (965)
|.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 370 ------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 370 ------------------------------------------------PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp ------------------------------------------------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34677888888999999999999999998887
Q ss_pred cCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhH
Q 046930 650 KGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIY 729 (965)
Q Consensus 650 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 729 (965)
..+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|+++|+++++.. +.+..+|
T Consensus 402 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 643 367789999999999999999999999988864 3467888889999999999999999999998753 5578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC-ChHHHHHH
Q 046930 730 NSFIDGYCKFGQLEEAFKFLHDLKIN----CLEPD--KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP-DFLGFLYL 802 (965)
Q Consensus 730 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 802 (965)
+.++.+|.+.|++++|++.|+++.+. +..|+ ..+|..++.+|.+.|++++|++.|+++.+. .| +...+..+
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 556 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 99999999999999999999998775 55776 578899999999999999999999998763 45 45568889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh
Q 046930 803 VKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+.+|.+.|++++|.++|+++++
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999988
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-37 Score=359.50 Aligned_cols=515 Identities=11% Similarity=-0.005 Sum_probs=316.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN 137 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (965)
...|.+..+...+..+. .++...|..++..|.+.|++++|+.+|++++.. .|+..++..++.+|.+.|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~ 134 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS------LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYA 134 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHH
T ss_pred cccCccCCCCCccccch------HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHH
Confidence 34455555555544321 356678888888888899999999999888864 367778888888888889999
Q ss_pred HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 138 EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217 (965)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 217 (965)
+|+.+|+++... ++++.+++.++.+|.+.|++++|.++|+++... +.. .
T Consensus 135 ~A~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-----~ 183 (597)
T 2xpi_A 135 RAKCLLTKEDLY----------------------NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF----RKD-----E 183 (597)
T ss_dssp HHHHHHHHTCGG----------------------GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT----C--------
T ss_pred HHHHHHHHHhcc----------------------ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc----ccc-----c
Confidence 988888887542 367888888888888889998888888853211 100 0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 046930 218 FGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTS 297 (965)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 297 (965)
.++.+.++ ...+.+.+..+|+.++.+|.+.|++++|.++|++|.+.++. +...+..++..+...+..+
T Consensus 184 ~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 184 KNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp -------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHH
T ss_pred cccccccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhH
Confidence 00000000 01122334445555555555555555555555555544221 3333333333222221111
Q ss_pred hHHHH---Hc-----CCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 298 DAEEV---SK-----GILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQ 369 (965)
Q Consensus 298 ~a~~~---~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 369 (965)
.+... +. .......++..++..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 11100 00 00112233445566777788888888888887665 5788999999999999999999999999
Q ss_pred HchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 046930 370 AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYV 449 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 449 (965)
++.+.+ +.+..++..++.++.+.|++++|..+++++.+..|.+..++..++.+|.+.|++++|..+|+++.+. .|
T Consensus 330 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 404 (597)
T 2xpi_A 330 KILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DP-- 404 (597)
T ss_dssp HHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--
T ss_pred HHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC--
Confidence 998765 3466788899999999999999999999999888889999999999999999999999999998764 12
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHH
Q 046930 450 GMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGL 529 (965)
Q Consensus 450 ~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (965)
T Consensus 405 -------------------------------------------------------------------------------- 404 (597)
T 2xpi_A 405 -------------------------------------------------------------------------------- 404 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHH
Q 046930 530 DNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLV 609 (965)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 609 (965)
T Consensus 405 -------------------------------------------------------------------------------- 404 (597)
T 2xpi_A 405 -------------------------------------------------------------------------------- 404 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 046930 610 MGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVP 689 (965)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 689 (965)
.+..+|+.++.+|.+.|++++|+++|+++.+.++ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.
T Consensus 405 ---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 405 ---------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp ---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 1334444555555555555555555555554422 244555555555555555556655555555533 22
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-Chh
Q 046930 690 SEVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKPS--TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKF 762 (965)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 762 (965)
+..+|+.++.+|.+.|++++|+++|+++++. +..|+ ..+|..++.+|.+.|++++|+..++++.+. .| +..
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 551 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDAN 551 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChH
Confidence 3555555666666666666666666655543 34454 456666666666666666666666666653 33 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHH
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGL 806 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~ 806 (965)
+|..++.+|...|++++|++.|+++++ +.|+... +..++.+|
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 666666666666666666666666654 4554433 44444443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.3e-28 Score=267.18 Aligned_cols=377 Identities=17% Similarity=0.091 Sum_probs=274.0
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
+..+ .+.|++++|+..+..+++.. |.+..++..++.++...|++++|...++.+++.+ |.++.+|..++.+|.+
T Consensus 6 a~~~-~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~---p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHRE-YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHH-HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 3444 67899999999999988866 5567778888888999999999999999999888 7888999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV 176 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 176 (965)
.|++++|+..|++++... |.+..+|..++.++...|++++|+..|+++++.++ .+..
T Consensus 80 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~ 136 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP---------------------DLYC 136 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT---------------------TCTH
T ss_pred CCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CcHH
Confidence 999999999999999876 66777899999999999999999999999887532 3456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 046930 177 SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVC 256 (965)
Q Consensus 177 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (965)
++..+...+...|++++|.+.|+++++..+. +..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...+.
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 7778888888999999999999999887544 67888899999999999999999999998876 556778888888899
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHH
Q 046930 257 RRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILET 332 (965)
Q Consensus 257 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (965)
..|++++|...+++.....+. +..++..++.++...|++++|...++.. |.+..++..++..+...|++++|+..
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888876332 4667777777777777777766665422 33444555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 046930 333 KQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS 412 (965)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 412 (965)
++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+..++..++.++.+.|++++|+..|+++.+..|.
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55555443 3344455555555555555555555555554432 233444555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhc
Q 046930 413 SVACYNCIINGLCKS 427 (965)
Q Consensus 413 ~~~~~~~l~~~~~~~ 427 (965)
+..+|..++..+...
T Consensus 372 ~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 372 FADAYSNMGNTLKEM 386 (388)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHhHHHHHHHc
Confidence 555555555544443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.8e-28 Score=261.95 Aligned_cols=360 Identities=16% Similarity=0.066 Sum_probs=304.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
++..+.+.|++++|+..+..+.+.+ |.+..++..++..+...|++++|...++++++.. |.+..+|..++.++.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHH
Confidence 4667889999999999999999998 8889999999999999999999999999999876 7888999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 046930 133 LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLIT 212 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (965)
.|++++|+..|+++++.. +.+..+|..++.++.+.|++++|.+.|+++++..+. +...
T Consensus 80 ~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 137 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK---------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCV 137 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHH
T ss_pred CCCHHHHHHHHHHHHHcC---------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHH
Confidence 999999999999998753 245778999999999999999999999999987544 5677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 292 (965)
+..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 8888999999999999999999999875 557889999999999999999999999999987543 57788888888888
Q ss_pred cCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046930 293 VGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALY 368 (965)
Q Consensus 293 ~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (965)
.|++++|...+... |.+..++..++.++...|++++|+..++++.+.. +.+..++..++..+.+.|++++|...|
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988888876532 4567777778888888888888888888887764 335667777788888888888888888
Q ss_pred HHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 369 QAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
+++.+.. +.+..++..++..+...|++++|+..++++.+..|.+..++..++.++.+.|++++|+..++++++.
T Consensus 295 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 295 NTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8877654 4566777778888888888888888888888777777788888888888888888888888887764
No 5
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.94 E-value=3.8e-20 Score=211.98 Aligned_cols=754 Identities=12% Similarity=0.100 Sum_probs=450.3
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.++.+.+.++ .+.|+++.++..-+ ..|..|| |..+++.+.+. ++++|.+.-..+.+.. || .-....+
T Consensus 483 ~~~~Kvi~~l-~~~gq~~ki~~Y~~----~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~---~p-~~d~~~i 549 (1630)
T 1xi4_A 483 NVPNKVIQCF-AETGQVQKIVLYAK----KVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE---EP-LADITQI 549 (1630)
T ss_pred CCcHHHHHHH-HHhCCHHHHHHHHh----ccCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC---CC-ccCHHHH
Confidence 3566778887 57889888877633 3455444 44566666654 6788888777776664 32 2335678
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCC-CHh-----------------------------hHHHHHHHHHhcCChhHHH
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKP-NVV-----------------------------SYTSLVIALCMLGRVNEVN 140 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-----------------------------~~~~l~~~~~~~~~~~~A~ 140 (965)
...+...+...++..++..+++.+ .| +.. -+..++..|-+.|-++.|+
T Consensus 550 vd~f~~~~~iq~~t~fLld~lk~n--~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qral 627 (1630)
T 1xi4_A 550 VDVFMEYNLIQQCTAFLLDALKNN--RPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRAL 627 (1630)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhCC--ChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHH
Confidence 889999999999999998888765 33 111 2345666667777777777
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGF 220 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 220 (965)
+.|..+... +..+.. ....++.. |+ .|...=..+.+++++++|+..+++-|......+..-|
T Consensus 628 e~y~d~~di-------------kR~~~~-~~~~~~~~---l~-~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky 689 (1630)
T 1xi4_A 628 EHFTDLYDI-------------KRAVVH-THLLNPEW---LV-NYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKY 689 (1630)
T ss_pred HhcCCHHHH-------------HHHhhc-cCcCCHHH---HH-HHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHH
Confidence 776544321 000000 01111111 22 2333356688888888888755444433322222222
Q ss_pred HhcCChHHHHHHHHHHHH-----------cCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH------------HHCCCC
Q 046930 221 CKKGKLEEAFTVFKKVED-----------LGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM------------EKKGIK 277 (965)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------~~~g~~ 277 (965)
...=-.+.-+++|++... .+...|+.+....|.++++.|++.+.+++.++- .+...
T Consensus 690 ~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl- 768 (1630)
T 1xi4_A 690 HEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL- 768 (1630)
T ss_pred HhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCC-
Confidence 222223333333333221 123557778888899999988888887776541 11111
Q ss_pred CCHH---------H-HHHHHHHHHhcCCcchHHHH-HcCCCC---------------CHHHHHHHHHHhhhcCChhHHH-
Q 046930 278 PSIV---------T-YNTIINGLCKVGRTSDAEEV-SKGILG---------------DVVTYSTLLHGYIEEDNVNGIL- 330 (965)
Q Consensus 278 ~~~~---------~-~~~l~~~~~~~g~~~~a~~~-~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~- 330 (965)
||.. . ...|+.-+.+++.. +-+++ ..++.| +......++......-..++-.
T Consensus 769 ~d~~pli~vCdr~~~v~~l~~yLy~n~~~-~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~ 847 (1630)
T 1xi4_A 769 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQ-KYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVA 847 (1630)
T ss_pred CCCCCceeeccccccHHHHHHHHHhcCch-hHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHH
Confidence 1110 0 11222222222222 22222 222211 2222333333222222222222
Q ss_pred ------------HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH---------HHHHHchhCCCcccH--------
Q 046930 331 ------------ETKQRLEEAGIQMDIVMCNILIKALFMVGA-LEDAR---------ALYQAMPEMNLVANS-------- 380 (965)
Q Consensus 331 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~---------~~~~~~~~~~~~~~~-------- 380 (965)
-.++.-...| ..++.++|+|+..|...++ .+.-+ .+=+-..+++ |..
T Consensus 848 ~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rD--p~la~iay~~g 924 (1630)
T 1xi4_A 848 EVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRD--PHLACVAYERG 924 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcC--cchHHHHhccc
Confidence 2233334444 5688899999999986543 33211 0111111111 211
Q ss_pred -------------HHHHHHHHHHHHcCCHHH---H--------HHHHHHHHhc---CCCCHHHHHHHHHHHHhcCChHHH
Q 046930 381 -------------VTYSTMIDGYCKLGRIEE---A--------LEIFDELRRM---SISSVACYNCIINGLCKSGMVDMA 433 (965)
Q Consensus 381 -------------~~~~~l~~~~~~~~~~~~---A--------~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 433 (965)
..|-...+-+.+..+.+- . ..+.+..... ...++.-......+|...|.+.+|
T Consensus 925 ~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~Ea 1004 (1630)
T 1xi4_A 925 QCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNEL 1004 (1630)
T ss_pred CCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHH
Confidence 112222333333333211 1 1122222221 122455566778888999999999
Q ss_pred HHHHHHHHHCCC--CCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 046930 434 TEVFIELNEKGL--SLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMR 511 (965)
Q Consensus 434 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (965)
++++++++-.+. .-+...-+.++.+..+. +.....+.+.++.... ...++..+...|.+++|..+|++..
T Consensus 1005 ieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1005 IELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 999999984421 12233444455555555 5566666666655322 3457888999999999999999863
Q ss_pred hcCCccchhcHHHHHHHHH-hcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchH
Q 046930 512 KRGSVVTDQSYYSILKGLD-NEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPV 590 (965)
Q Consensus 512 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 590 (965)
. +...+..+. ..++++.|.++.... .....+.+++..+...|++++|+..|.+. .+.....
T Consensus 1077 ~---------~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~ 1138 (1630)
T 1xi4_A 1077 V---------NTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYM 1138 (1630)
T ss_pred C---------HHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHH
Confidence 2 111112222 556666666666533 44677888899999999999999998765 4455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQG 670 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 670 (965)
.++..+.+.|++++|.+.+.......++ +.....++.+|++.+++++.... ++ .++...|..++..|...|
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e--~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccc--ccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcC
Confidence 7888888899999998888776655433 23334588888888888753333 22 346667777888888999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 046930 671 CFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLH 750 (965)
Q Consensus 671 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 750 (965)
++++|..+|..+ ..|..++..|.+.|++++|++.+++.. +..+|..+..+|...|++..|.....
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999874 368888888888899999999888762 56788888888888888888887665
Q ss_pred HhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHh--cCCCHHHHHHHHHHHHhcCc
Q 046930 751 DLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLC--TKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 751 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~--~~g~~~eA~~~~~~~~~~~~ 827 (965)
.+ ..++..+..++..|...|.+++|+.+++..+ ++.|.+.. +.-|+..+. +-++.-|+++.|.+-.+.++
T Consensus 1275 ~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1275 HI-----VVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred hh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 43 2345566688888999999999999998884 56676655 545666555 57788888888887766333
Q ss_pred chhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHH
Q 046930 828 VLELINRVDIEVESESVLNFLISLCEQGSILEAIAILD 865 (965)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 865 (965)
..+- --+...|..+...|.+.|+++.|+..+-
T Consensus 1348 ~~r~------~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1348 VLRA------AEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HhHH------HHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2110 0123346667777888999999986543
No 6
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.94 E-value=1.3e-20 Score=215.87 Aligned_cols=759 Identities=12% Similarity=0.111 Sum_probs=378.4
Q ss_pred ccccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 046930 3 KTSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF 82 (965)
Q Consensus 3 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (965)
+.|+|-....|......+ ..+|+|++|.++--.+ -.|.--++.+...+-++=...|+..--+..|..+++.+ +.
T Consensus 354 r~~lpGad~l~~~~F~~l-~~~g~y~~AA~~aa~s--p~giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g---~L 427 (1630)
T 1xi4_A 354 RNNLAGAEELFARKFNAL-FAQGNYSEAAKVAANA--PKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG---QL 427 (1630)
T ss_pred hcCCCCchhHHHHHHHHH-HHcCCHHHHHHHHHhC--ccccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC---CC
Confidence 567787778888888877 6788888886653331 12333445555555444445566666666666666665 45
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh---------------------hHHHHHHHHHhcCChhHHHH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV---------------------SYTSLVIALCMLGRVNEVNE 141 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~~~~~~A~~ 141 (965)
+..--..+++.-..+|+.+-...++.+- .+..+-. +....+.++++.|+++++..
T Consensus 428 n~~eSlEl~r~vl~q~r~~lle~Wl~e~----KL~~SEeLGDlv~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~ 503 (1630)
T 1xi4_A 428 NKYESLELCRPVLQQGRKQLLEKWLKED----KLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVL 503 (1630)
T ss_pred cHHHHHHHHHHHHHhchHHHHHHHHHhC----CccccHHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHH
Confidence 5554555555555555543333333221 1111100 11233344444444444444
Q ss_pred HHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 142 LFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC 221 (965)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (965)
.-++ .|..|| |..|+..+.+. +++.|.++-..+.+... .....+.++..+.
T Consensus 504 Y~~~-----------------------~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~~--p~~d~~~ivd~f~ 554 (1630)
T 1xi4_A 504 YAKK-----------------------VGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDEE--PLADITQIVDVFM 554 (1630)
T ss_pred HHhc-----------------------cCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCCC--CccCHHHHHHHHH
Confidence 4222 122333 33445444433 46666666555554421 2334555667777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 046930 222 KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
..+...++..++-+..+.+-+.+...-+.++..=.. +.+ ++-+.+...+.- +..-+..+...|.+.|-++.|++
T Consensus 555 ~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~-~~p----qvadail~~~~f-thyd~~~IA~LCE~aGl~qrale 628 (1630)
T 1xi4_A 555 EYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLM-HAP----QVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALE 628 (1630)
T ss_pred hcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhc-cch----hHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHH
Confidence 777777777777776665533333333333333211 222 233333344333 44556778889999999999999
Q ss_pred HHcCCCC-------CHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHH-------------HHHHHHhcCCH
Q 046930 302 VSKGILG-------DVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNI-------------LIKALFMVGAL 361 (965)
Q Consensus 302 ~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~g~~ 361 (965)
.+..+.. ....-...+..|...=+.+.++++++.|...++.-+...... ++..+-+.+.+
T Consensus 629 ~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~ 708 (1630)
T 1xi4_A 629 HFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSF 708 (1630)
T ss_pred hcCCHHHHHHHhhccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcch
Confidence 8764311 001111123344445667888999999987655544433333 33333333333
Q ss_pred HHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhcCCCCHH--------------
Q 046930 362 EDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDEL------------RRMSISSVA-------------- 415 (965)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~-------------- 415 (965)
+.-.-++..... ...|+.+....+.++++.|++.+.+++.++- .+...++..
T Consensus 709 egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~ 786 (1630)
T 1xi4_A 709 EGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHD 786 (1630)
T ss_pred hhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHH
Confidence 333333333332 3457788889999999999998888877551 111111100
Q ss_pred --H------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHH----------Hh
Q 046930 416 --C------YNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRI----------EN 477 (965)
Q Consensus 416 --~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~----------~~ 477 (965)
. ....+..|.+.-++..+-.+...+++. ..+......++.........++..+.+++- +.
T Consensus 787 l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~--d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~ 864 (1630)
T 1xi4_A 787 LVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDV--DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEA 864 (1630)
T ss_pred HHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012333444443333333444444332 344445555555443333333332222111 11
Q ss_pred c--ccccchhHHHHHHHHHHhcCcH-------------------------HHHHHHHHHHHhcC-----CccchhcHHHH
Q 046930 478 L--RSEIYDIICNDVISFLCKRGSS-------------------------EVASELYMFMRKRG-----SVVTDQSYYSI 525 (965)
Q Consensus 478 ~--~~~~~~~~~~~l~~~~~~~g~~-------------------------~~A~~~~~~~~~~~-----~~~~~~~~~~l 525 (965)
. .-...+.++|+++..|...++- ..|.-.|++- ..+ +.-....|...
T Consensus 865 ~~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g-~~d~eli~vt~~n~l~k~~ 943 (1630)
T 1xi4_A 865 RIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERG-QCDLELINVCNENSLFKSL 943 (1630)
T ss_pred HHhCCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhccc-CCcHHHHHHHhcchhHHHH
Confidence 1 1112335667766666643321 1222222110 000 00001112222
Q ss_pred HHHHHhcCcch--------------hhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCc----ccc
Q 046930 526 LKGLDNEGKKW--------------LIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS----TVT 587 (965)
Q Consensus 526 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~ 587 (965)
.+-++...+.+ ..........-.....+..++-.+..|...|.+.+|+.+++++.-.+. +..
T Consensus 944 arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~ 1023 (1630)
T 1xi4_A 944 SRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRN 1023 (1630)
T ss_pred HHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHH
Confidence 22222221110 111111111122345566777788888888999999999988774332 222
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 046930 588 IPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLC 667 (965)
Q Consensus 588 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 667 (965)
....++....+. +..+....+.... ......++..+...|.+++|..+|++... .....+.+ +.
T Consensus 1024 LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie 1087 (1630)
T 1xi4_A 1024 LQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IE 1087 (1630)
T ss_pred HHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HH
Confidence 222344344333 2233333333322 11123356666666677777666666421 11112222 22
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 046930 668 RQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFK 747 (965)
Q Consensus 668 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 747 (965)
..+++++|.++.++. -++.+|..++.++...|++++|++.|.+. .|...|..++.++.+.|++++|++
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 555666666666543 12455666666666666666666666442 255556666666666666666666
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 748 FLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 748 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
++....+. .+++.....++.+|.+.+++++ ++.| ++ .|+...+..++..|...|++++|..+|.++-
T Consensus 1156 yL~mArk~--~~e~~Idt~LafaYAKl~rlee-le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---- 1222 (1630)
T 1xi4_A 1156 YLQMARKK--ARESYVETELIFALAKTNRLAE-LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 1222 (1630)
T ss_pred HHHHHHhh--cccccccHHHHHHHHhhcCHHH-HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----
Confidence 66666553 2333223346666666666553 2222 11 3344445556666666666666666666541
Q ss_pred chhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 828 VLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
.+..++..|.+.|++++|++.+++.
T Consensus 1223 ---------------ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1223 ---------------NFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ---------------HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 3555566666666666666666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.2e-24 Score=241.89 Aligned_cols=232 Identities=13% Similarity=0.016 Sum_probs=200.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY 699 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 699 (965)
+..++..++..+...|++++|+..|+++.+..+. ..++..++.+|...|++++|+..++++++.. +.+..++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 5777888999999999999999999999987543 7889999999999999999999999999864 345778899999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHH
Q 046930 700 NLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDME 778 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 778 (965)
++...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++++.+. .| +..++..++.++...|+++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999863 456788999999999999999999999999884 55 5678999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCh-------HHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCcchhhhhcccccc-ccccHHHH
Q 046930 779 GALGFFLDFNTKGVSPDF-------LGFLYLVKGLCT---KGRMEEARSILREMLQSKSVLELINRVDIEV-ESESVLNF 847 (965)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~---~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 847 (965)
+|++.|+++++ +.|+. ..+..++.++.. .|++++|...++++++. .| ....+..+
T Consensus 390 ~A~~~~~~a~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------------~~~~~~~~~~l 455 (514)
T 2gw1_A 390 KALKQYDLAIE--LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------------DPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHHH--HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------------CTTCHHHHHHH
T ss_pred HHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------------CcccHHHHHHH
Confidence 99999999976 33332 268889999999 99999999999999983 34 34466778
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhcc
Q 046930 848 LISLCEQGSILEAIAILDEIGYML 871 (965)
Q Consensus 848 ~~~~~~~g~~~~A~~~~~~~~~~~ 871 (965)
+..+...|++++|++.++++....
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 888999999999999999976553
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.6e-24 Score=240.30 Aligned_cols=432 Identities=12% Similarity=-0.020 Sum_probs=330.7
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
....|..++..+ .+.|++++|+..|++++... |++.++..++.++...|++++|+..|+.+++.+ |.+..++.
T Consensus 5 ~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 77 (514)
T 2gw1_A 5 YALALKDKGNQF-FRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHH-HHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCCHHHHH
T ss_pred hHHHHHHHHHHH-HHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHHHHHHH
Confidence 345778888887 79999999999999999876 578899999999999999999999999999998 88999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC------------------
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG------------------ 150 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------ 150 (965)
.++.+|...|++++|+..|++++..+ +++.......+..+........+.+.+..+....
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 99999999999999999999999876 4555554444444443333333333222111111
Q ss_pred -CccchhhhhhHHhhhhh-----hcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----C--CC------CC
Q 046930 151 -LKFDVVFYSCWICGQMV-----DKGIKPDTVSYTILLDGFSK---EGTIEKAVGILNKMIE-----D--RL------RP 208 (965)
Q Consensus 151 -~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~ 208 (965)
..|+.......+...-. ....+.+...+..+...+.. .|++++|...|+++++ . .+ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 01111111111100000 00002235556666665665 8999999999999988 3 11 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIIN 288 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 288 (965)
+..++..++..+...|++++|...|+++.+.... ...+..+..++...|++++|...++++...... +..++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 3567788889999999999999999999988633 888888999999999999999999999887433 6678889999
Q ss_pred HHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 046930 289 GLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDA 364 (965)
Q Consensus 289 ~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 364 (965)
.+...|++++|...++.. +.+..++..++..+...|++++|+..++.+.+.. +.+...+..++..+...|++++|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999887643 5677888899999999999999999999998765 33567888889999999999999
Q ss_pred HHHHHHchhCCCc-cc----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046930 365 RALYQAMPEMNLV-AN----SVTYSTMIDGYCK---LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEV 436 (965)
Q Consensus 365 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (965)
...++++.+.... ++ ..++..++.++.. .|++++|+..|+++....|.+..++..++.++...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988764310 11 3378888999999 99999999999999998888999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHH
Q 046930 437 FIELNEKGLSLYVGMHKII 455 (965)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~ 455 (965)
++++++. .|+.......
T Consensus 472 ~~~a~~~--~~~~~~~~~~ 488 (514)
T 2gw1_A 472 FEESADL--ARTMEEKLQA 488 (514)
T ss_dssp HHHHHHH--CSSHHHHHHH
T ss_pred HHHHHHh--ccccHHHHHH
Confidence 9999886 5655544433
No 9
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=3.4e-25 Score=242.05 Aligned_cols=189 Identities=14% Similarity=0.199 Sum_probs=181.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHhCCCCCCH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC---------FVEAFRLFDSLERIDMVPSE 691 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~ 691 (965)
...++.++++|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 456888999999999999999999999999999999999999999987654 78999999999999999999
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHH
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGF 771 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 771 (965)
.+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcC
Q 046930 772 CQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTK 809 (965)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 809 (965)
++.|++++|.+++++|.+.+..|+..||..+...+...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998888753
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.5e-23 Score=236.95 Aligned_cols=438 Identities=12% Similarity=0.082 Sum_probs=293.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046930 345 IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGL 424 (965)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (965)
...+..+...+.+.|++++|...|+++.+.+ +.+..++..++.++...|++++|+..|+++.+..|.+..++..++.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3456667777888888888888888887754 456677888888888888888888888888888888888888888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHH
Q 046930 425 CKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVAS 504 (965)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 504 (965)
...|++++|+..|+ .+.. .|+.... .+.. +...+...+|.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~~~~--~~~~-----------------------------------~~~~~~~~~a~ 143 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDFDGA--SIEP-----------------------------------MLERNLNKQAM 143 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------C-----------------------------------HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCCChH--HHHH-----------------------------------HHHHHHHHHHH
Confidence 88888888888886 3332 2222211 1111 22223345566
Q ss_pred HHHHHHHhcCC------ccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHh
Q 046930 505 ELYMFMRKRGS------VVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKN 578 (965)
Q Consensus 505 ~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 578 (965)
..++.++...+ .|+... +..+....+...++..+..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTS--------------------------------------LASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHCC-------CCCCCHHH--------------------------------------HHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHhCccccccccchHhH--------------------------------------HHHHHHhcChHHHHHHHhh
Confidence 66666544211 111100 1111111112222221111
Q ss_pred hhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHH--------HhcCCHHHHHHHHHHHHhc
Q 046930 579 MKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAAL--------CREGYVNKALDLCAFAKNK 650 (965)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~ 650 (965)
..... +........+...+ ...|++++|+.+|+++.+.
T Consensus 186 ~~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 186 SSNYD----------------------------------TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp CCSSC----------------------------------SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccc----------------------------------cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11110 00111222222221 2235789999999999887
Q ss_pred CCccc-------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 046930 651 GITVN-------IVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFK 723 (965)
Q Consensus 651 ~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (965)
.+. + ..++..++..+...|++++|+..|+++++.. |+...+..+...+...|++++|++.|+++++.. +
T Consensus 232 ~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 307 (537)
T 3fp2_A 232 NTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-P 307 (537)
T ss_dssp -CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-T
T ss_pred CCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-C
Confidence 433 3 2357778888999999999999999999854 667888999999999999999999999999863 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh-HHHHH
Q 046930 724 PSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF-LGFLY 801 (965)
Q Consensus 724 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ 801 (965)
.+..++..++.++...|++++|+..++++.+. .| +..++..++.++...|++++|++.++++++ ..|+. ..+..
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~ 383 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTF 383 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHH
Confidence 56889999999999999999999999999984 56 467899999999999999999999999976 45654 45888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhc----------CcHHHHHHHHHHHhhcc
Q 046930 802 LVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQ----------GSILEAIAILDEIGYML 871 (965)
Q Consensus 802 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 871 (965)
++..+...|++++|...|+++++..+... ........+..++..+... |++++|+..++++..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-- 456 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQE-----KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-- 456 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCS-----SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcch-----hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--
Confidence 99999999999999999999998432100 0000111234445566666 999999999887532
Q ss_pred CCCcccchhhhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHhhhccchHHHHH
Q 046930 872 FPTQRFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCSKGELQKAN 951 (965)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~g~~~~A~ 951 (965)
.. |.+...++.++..|.+.|++++|+
T Consensus 457 -----------------------------------------------------~~-p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 457 -----------------------------------------------------LD-PRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp -----------------------------------------------------HC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------------------------------------hC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 12 222233344434488888888888
Q ss_pred HHHHHHhcccccC
Q 046930 952 KLMKEMLSSFKED 964 (965)
Q Consensus 952 ~~~~~~~~~~~~~ 964 (965)
+.|+++++..|++
T Consensus 483 ~~~~~al~~~~~~ 495 (537)
T 3fp2_A 483 ELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHC--C
T ss_pred HHHHHHHHhCCCc
Confidence 8888888877764
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.6e-22 Score=224.36 Aligned_cols=345 Identities=11% Similarity=0.080 Sum_probs=268.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHH
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFF 107 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 107 (965)
..+...+..++..+ |.+...+..++..+.+.|++++|+..|+.+++.+ |.+..++..++.++...|++++|+..|
T Consensus 9 ~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 9 SGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34555666666544 5677788999999999999999999999999887 788999999999999999999999999
Q ss_pred HHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH---HHHHHHHHH
Q 046930 108 ENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT---VSYTILLDG 184 (965)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~l~~~ 184 (965)
+++++.+ |.+..++..++.+|...|++++|...|+++.+..+ .+. .++..++..
T Consensus 84 ~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 84 TKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP---------------------SENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC---------------------CHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------------CChhhHHHHHHHHHH
Confidence 9999876 67788999999999999999999999999987531 334 677777444
Q ss_pred ------------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 185 ------------FSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 185 ------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
+.+.|++++|...|+++++..+. +..++..++.++.+.|++++|+..|+++.+.. +.+..++..++
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 218 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 78889999999999999886543 78888889999999999999999999988765 55778888899
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHH
Q 046930 253 DGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILET 332 (965)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (965)
.+|...|++++|...|+++...... +...+..+.... .......++..+...|++++|+..
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK------------------KLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH------------------HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999998875322 333333321110 011233456778888888888888
Q ss_pred HHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 046930 333 KQRLEEAGIQMD----IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRR 408 (965)
Q Consensus 333 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (965)
++.+....+. + ...+..++..+.+.|++++|...++++.+.. +.+..++..++.+|...|++++|+..|+++.+
T Consensus 280 ~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 280 YESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888876432 2 3477888888999999999999999987754 44678889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHH
Q 046930 409 MSISSVACYNCIING 423 (965)
Q Consensus 409 ~~~~~~~~~~~l~~~ 423 (965)
..|.+..++..+..+
T Consensus 358 ~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 358 HNENDQQIREGLEKA 372 (450)
T ss_dssp TSSSCHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHH
Confidence 888888888888754
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=9.6e-23 Score=226.14 Aligned_cols=330 Identities=12% Similarity=0.056 Sum_probs=245.0
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.+...|..++..+ ...|++++|+..|+.++... +.+..++..++.++...|++++|+..|+++++.+ |.+..
T Consensus 22 ~p~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 95 (450)
T 2y4t_A 22 SMADVEKHLELGKKL-LAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTA 95 (450)
T ss_dssp -CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred cHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHH
Confidence 477778999999988 78999999999999999865 5678899999999999999999999999999998 78899
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHH
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV---VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWI 162 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i 162 (965)
++..++.+|.+.|++++|+..|++++... |.+. ..+..++..+...+.+..|...+.. |- ...-...
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~---~~~A~~~- 165 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS----GD---YTAAIAF- 165 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TC---HHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc----CC---HHHHHHH-
Confidence 99999999999999999999999999865 5556 7788888877766666666655432 10 0000001
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 046930 163 CGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV 242 (965)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 242 (965)
...+... .+.+..++..++.+|.+.|++++|.+.|+++.+..+. +..++..++.++...|++++|+..|+++.+.. +
T Consensus 166 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 242 (450)
T 2y4t_A 166 LDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-Q 242 (450)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 1112111 2346888999999999999999999999999987543 78999999999999999999999999999875 4
Q ss_pred CCHhHHHHH------------HHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHcCC
Q 046930 243 ADEFVYATL------------IDGVCRRGDLDCAFRLLEDMEKKGIKPS----IVTYNTIINGLCKVGRTSDAEEVSKGI 306 (965)
Q Consensus 243 ~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 306 (965)
.+...+..+ +..+.+.|++++|..+|+++.+.... + ...+..++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~---------------- 305 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCF---------------- 305 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHH----------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHH----------------
Confidence 455555555 77888889999999999988875322 2 22344444444
Q ss_pred CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHH
Q 046930 307 LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTM 386 (965)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (965)
...|++++|+..++.+.... +.+...+..++.+|...|++++|...|+++.+.. +.+..++..+
T Consensus 306 --------------~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 369 (450)
T 2y4t_A 306 --------------SKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGL 369 (450)
T ss_dssp --------------HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHH
T ss_pred --------------HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 44555555555555555543 3345666666667777777777777777766643 2234444444
Q ss_pred H
Q 046930 387 I 387 (965)
Q Consensus 387 ~ 387 (965)
.
T Consensus 370 ~ 370 (450)
T 2y4t_A 370 E 370 (450)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.6e-22 Score=230.23 Aligned_cols=334 Identities=13% Similarity=0.045 Sum_probs=204.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+.+.|++++|+..|+.+++.+ |.++.++..++.+|...|++++|++.|+++++.+ |.+..++..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 99 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHH
Confidence 4567888899999999999999999999988 7889999999999999999999999999999877 7788899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR- 205 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 205 (965)
+.++...|++++|+..|+ ..... |+ .....+..+...+...+|...+++++...
T Consensus 100 a~~~~~~g~~~~A~~~~~-~~~~~----------------------~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 154 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLS-VLSLN----------------------GD--FDGASIEPMLERNLNKQAMKVLNENLSKDE 154 (537)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHC-----------------------------------CHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHcCCHHHHHHHHH-HHhcC----------------------CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999996 44321 22 11222334555666678888888886541
Q ss_pred -----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHH--------hcCCHhHHHHHHHHH
Q 046930 206 -----LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF-VYATLIDGVC--------RRGDLDCAFRLLEDM 271 (965)
Q Consensus 206 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~~A~~~~~~~ 271 (965)
..|+. ..+..+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++
T Consensus 155 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 155 GRGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchH----hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22332 3334455566666665555443322 22211 2222222221 225788899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 046930 272 EKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNIL 351 (965)
Q Consensus 272 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (965)
.+..+. +...+..+..++ ..+...+...|++++|+..++.+.... |+...+..+
T Consensus 229 l~~~p~-~~~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 282 (537)
T 3fp2_A 229 LSANTV-DDPLRENAALAL-----------------------CYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFL 282 (537)
T ss_dssp HC--CC-CHHHHHHHHHHH-----------------------HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHCCC-cchhhHHHHHHH-----------------------HHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHH
Confidence 876433 333333222222 223334445555555555555555543 224555555
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 046930 352 IKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVD 431 (965)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (965)
...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..|+++.+..|.+..++..++.++...|+++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555666666666666555443 2334555555666666666666666666666555555556666666666666666
Q ss_pred HHHHHHHHHHHC
Q 046930 432 MATEVFIELNEK 443 (965)
Q Consensus 432 ~A~~~~~~~~~~ 443 (965)
+|+..++++++.
T Consensus 362 ~A~~~~~~~~~~ 373 (537)
T 3fp2_A 362 ESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655554
No 14
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.92 E-value=3.1e-24 Score=234.47 Aligned_cols=206 Identities=18% Similarity=0.225 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHhcCCcccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC---------h
Q 046930 638 NKALDLCAFAKNKGITVNI-VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQ---------L 707 (965)
Q Consensus 638 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 707 (965)
..+..+.+.+.+++..+++ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445566667766655444 46888999999999999999999999999999999999999999987765 6
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 708 LDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDF 787 (965)
Q Consensus 708 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (965)
++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhh
Q 046930 788 NTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCE 853 (965)
Q Consensus 788 ~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (965)
.+.|+.||..+|..|+.+|++.|++++|.+++++|.+. +..|+..++..+...+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~----------g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL----------VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh----------CCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999874 367888877777766654
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=4.8e-20 Score=197.53 Aligned_cols=333 Identities=11% Similarity=0.054 Sum_probs=226.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|+..|+.+++.+ |.++.++..++.++...|++++|+..|+++++.. |.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 77 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHH
Confidence 3445566666666666666666666666665 5566666666666666666666666666666654 4455666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHH------------HHHHHHHHhcCCHHHH
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSY------------TILLDGFSKEGTIEKA 194 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A 194 (965)
+.++...|++++|...|+++.+..+... .+...+ ..++..+...|++++|
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQ------------------EEKEAESQLVKADEMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCccc------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 6666666666666666666665421000 112222 2336778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 195 VGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+.|+++.+..+. +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 140 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999987544 78888999999999999999999999999875 567888999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCH----HHHHH
Q 046930 275 GIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI----VMCNI 350 (965)
Q Consensus 275 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 350 (965)
... +...+..+.... .......++..+...|++++|+..++++....+. +. ..+..
T Consensus 218 ~~~-~~~~~~~~~~~~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 277 (359)
T 3ieg_A 218 DQD-HKRCFAHYKQVK------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKER 277 (359)
T ss_dssp CTT-CHHHHHHHHHHH------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHH
T ss_pred Ccc-chHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHH
Confidence 332 333332221110 1112223455666777777777777777765432 22 22445
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046930 351 LIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLC 425 (965)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (965)
+...+...|++++|...++++.+.. +.+..++..++.++...|++++|...|+++.+..|.+..++..+..+..
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 6667777777777777777776653 3456677777777777777777777777777777777777766666544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.7e-19 Score=193.24 Aligned_cols=324 Identities=12% Similarity=0.040 Sum_probs=257.3
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
+...+..++..+ ...|++++|+..|+.++... |.++.++..++.++...|++++|+..|+.+++.+ |.+..++.
T Consensus 2 ~~~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 75 (359)
T 3ieg_A 2 DVEKHLELGKKL-LAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK---MDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcchHHH
Confidence 345778888887 89999999999999999876 5678899999999999999999999999999998 78889999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCC---CCHhhHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCcc
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALK---PNVVSYTSL------------VIALCMLGRVNEVNELFVRMESEGLKF 153 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (965)
.++.++...|++++|+..|+++++.. | .+...+..+ +..+...|++++|+..++++.+..
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 150 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--- 150 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Confidence 99999999999999999999999865 4 455566555 688999999999999999998764
Q ss_pred chhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046930 154 DVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVF 233 (965)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 233 (965)
+.+..++..++..+...|++++|...|+++++..+. +..++..+..++...|++++|...|
T Consensus 151 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 151 ------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 256788999999999999999999999999987544 7889999999999999999999999
Q ss_pred HHHHHcCCCCCHhHHH------------HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 046930 234 KKVEDLGLVADEFVYA------------TLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 234 ~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
+++.+.. +.+...+. .+...+.+.|++++|...++++.+.... +...+.
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~----------------- 272 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTV----------------- 272 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHH-----------------
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHH-----------------
Confidence 9999875 33444333 2356678888999999988888875322 222111
Q ss_pred HHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHH
Q 046930 302 VSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSV 381 (965)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 381 (965)
..+..++.++...|++++|+..++.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..
T Consensus 273 ---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~ 341 (359)
T 3ieg_A 273 ---------RSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQ 341 (359)
T ss_dssp ---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHH
T ss_pred ---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChH
Confidence 112334455566666666777777776654 3467788888888888888888888888888764 33455
Q ss_pred HHHHHHHHHHH
Q 046930 382 TYSTMIDGYCK 392 (965)
Q Consensus 382 ~~~~l~~~~~~ 392 (965)
++..+..+...
T Consensus 342 ~~~~l~~~~~~ 352 (359)
T 3ieg_A 342 IREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.1e-17 Score=186.40 Aligned_cols=364 Identities=12% Similarity=0.024 Sum_probs=285.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh----cCC
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK----IGK 99 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 99 (965)
..+...+..+.. ..++..+..++..|.. .+++++|+..|+++.+.+ ++.++..++..|.. .++
T Consensus 24 ~~~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 24 NVNLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp -CCHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCC
T ss_pred hHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCC
Confidence 344566666555 3577888888888888 899999999999998865 46788999999999 899
Q ss_pred hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH
Q 046930 100 PELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT 175 (965)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (965)
+++|+.+|+++.+. .++.++..++..|.. .+++++|+..|+++.+. .++
T Consensus 95 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----------------------~~~ 147 (490)
T 2xm6_A 95 YAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-----------------------GRD 147 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------TCH
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------CCH
Confidence 99999999999874 477888889998988 78999999999998874 357
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhH
Q 046930 176 VSYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----KGKLEEAFTVFKKVEDLGLVADEFV 247 (965)
Q Consensus 176 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (965)
.++..|...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 221 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELG 221 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888887 789999999999998864 77888888888888 899999999999998875 5667
Q ss_pred HHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHcCC--CCCHHHHHHHH
Q 046930 248 YATLIDGVCR----RGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK----VGRTSDAEEVSKGI--LGDVVTYSTLL 317 (965)
Q Consensus 248 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~l~ 317 (965)
+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|...++.. ..+..++..+.
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 298 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLA 298 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7778888876 789999999999988764 45677777777776 77788887777643 34566667777
Q ss_pred HHhhhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHchhCCCcccHHHHHHHHHH
Q 046930 318 HGYIEE-----DNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVG---ALEDARALYQAMPEMNLVANSVTYSTMIDG 389 (965)
Q Consensus 318 ~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (965)
..|... +++++|+..+++..+.+ +...+..+...|...| ++++|.++|++..+.+ +...+..+...
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 372 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNA 372 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 777666 77888888888777764 4456666777666655 6777888888777753 56677777777
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 046930 390 YCK----LGRIEEALEIFDELRRMSISSVACYNCIINGLCK----SGMVDMATEVFIELNEKG 444 (965)
Q Consensus 390 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 444 (965)
|.. .+++++|+..|++..+.+ +..++..++.+|.. .+++++|...|++..+.+
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 777 678888888888777653 56777777777777 778888888888877764
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=7.2e-18 Score=187.99 Aligned_cols=381 Identities=11% Similarity=-0.014 Sum_probs=317.8
Q ss_pred cchhhHHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC
Q 046930 8 HQSRFFDSLIQGFCIK----RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVK 79 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 79 (965)
.+...+..++..| .. .++++.|+..|+++.+. .++.++..++..|.. .+++++|+..|+++.+.+
T Consensus 37 g~~~a~~~lg~~y-~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRY-FQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHH-HcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 4556778888877 55 79999999999999874 467788899999998 999999999999998865
Q ss_pred CCCchHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 046930 80 YPFDNFVCSSVVSGFCK----IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 80 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 151 (965)
++.++..++..|.. .+++++|+.+|+++.+. .++.++..++.+|.. .+++++|+..|+++.+.
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 56788999999998 89999999999999884 477889999999988 78999999999999874
Q ss_pred ccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 046930 152 KFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----K 223 (965)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 223 (965)
.++.++..|...|.. .+++++|...|++..+.+ +..++..+...|.. .
T Consensus 181 ---------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 181 ---------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred ---------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 467888899999988 899999999999999864 67788888888886 7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----C
Q 046930 224 GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR----RGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKV-----G 294 (965)
Q Consensus 224 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g 294 (965)
+++++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|... +
T Consensus 237 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 89999999999998865 45677778888887 899999999999998764 566788888888887 8
Q ss_pred CcchHHHHHcCC--CCCHHHHHHHHHHhhhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 046930 295 RTSDAEEVSKGI--LGDVVTYSTLLHGYIEED---NVNGILETKQRLEEAGIQMDIVMCNILIKALFM----VGALEDAR 365 (965)
Q Consensus 295 ~~~~a~~~~~~~--~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 365 (965)
++++|...++.. ..+..++..+...|...| ++++|++.+++..+.+ ++..+..|...|.. .+++++|.
T Consensus 311 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 311 NREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999988754 456778888888887766 8899999999999874 67888889999988 89999999
Q ss_pred HHHHHchhCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 366 ALYQAMPEMNLVANSVTYSTMIDGYCK----LGRIEEALEIFDELRRMSIS---SVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
..|++..+.+ +..++..+...|.. .+++++|...|+++.+.++. +..+...+...+.. +.+.+.+..+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~ 462 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQ 462 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHH
Confidence 9999999865 57788889999998 89999999999999998643 66666666555432 3344444444
Q ss_pred HHHH
Q 046930 439 ELNE 442 (965)
Q Consensus 439 ~~~~ 442 (965)
+..+
T Consensus 463 ~~~~ 466 (490)
T 2xm6_A 463 QYIE 466 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.3e-19 Score=187.46 Aligned_cols=285 Identities=10% Similarity=-0.008 Sum_probs=226.0
Q ss_pred ccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch
Q 046930 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN 84 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (965)
+.|.+...+..++..+ ...|++++|+..|+.++... +.+...+..++.++...|++++|+..++++++.+ |.++
T Consensus 17 ~~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 90 (330)
T 3hym_B 17 GLQENLDVVVSLAERH-YYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY---PSNP 90 (330)
T ss_dssp ---CCCTTHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTST
T ss_pred hchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCH
Confidence 4566777888888877 67799999999999988876 4455667777788888999999999999999887 7788
Q ss_pred HHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh
Q 046930 85 FVCSSVVSGFCKIG-KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163 (965)
Q Consensus 85 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~ 163 (965)
.++..++..+...| ++++|+..|++++... |.+...|..++.++...|++++|+..|+++.+..+
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------ 156 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK------------ 156 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc------------
Confidence 89999999999999 8999999999998865 66677888899999999999999999999887532
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---
Q 046930 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG--- 240 (965)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 240 (965)
.+...+..++..+...|++++|...|+++++..+. +..++..++.++...|++++|...++++.+..
T Consensus 157 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 157 ---------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp ---------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred ---------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 34566777888889999999999999999887544 67888888899999999999999998887642
Q ss_pred -----CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHH
Q 046930 241 -----LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVV 311 (965)
Q Consensus 241 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~ 311 (965)
.+....++..+..++...|++++|...+++..+.... +...+..+...+...|++++|...++.. |.+..
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 1333567888888888999999999999998876433 5667778888888888888888777644 34555
Q ss_pred HHHHHHHHh
Q 046930 312 TYSTLLHGY 320 (965)
Q Consensus 312 ~~~~l~~~~ 320 (965)
++..+..++
T Consensus 306 ~~~~l~~~~ 314 (330)
T 3hym_B 306 SVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566565555
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-18 Score=183.82 Aligned_cols=300 Identities=13% Similarity=0.089 Sum_probs=181.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.+...+..++..+...|++++|+.+|+.+++.+ |.+..++..++.++...|++++|+..|+++++.. |.++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 93 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSW 93 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHH
Confidence 4445556666666666666666666666666665 5555666666666666666666666666666654 4455566
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLG-RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMI 202 (965)
Q Consensus 124 ~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 202 (965)
..++.++...| ++++|+..|+++++.. +.+..+|..++..+...|++++|...|+++.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 152 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE---------------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC---------------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC---------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666666 6666666666666542 1234556666666666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 046930 203 EDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVT 282 (965)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 282 (965)
+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+....
T Consensus 153 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----- 225 (330)
T 3hym_B 153 QLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA----- 225 (330)
T ss_dssp HHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-----
T ss_pred Hhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh-----
Confidence 55332 33444455555666666666666666655543 334455555555555555555555555554432000
Q ss_pred HHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 046930 283 YNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALE 362 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 362 (965)
.+. ....+....++..+...+...|+++
T Consensus 226 ----------~~~------------------------------------------~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 226 ----------IGN------------------------------------------EVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp ----------TSC------------------------------------------SCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred ----------ccc------------------------------------------cccccHHHHHHHHHHHHHHHhcCHH
Confidence 000 0011233456667777777777777
Q ss_pred HHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCC
Q 046930 363 DARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGL-CKSGM 429 (965)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 429 (965)
+|...++++.+.. +.+..++..++.++...|++++|...|+++.+..|.+..++..++.++ ...|+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 7777777776653 345567777777788888888888888887777777777777777776 34444
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.1e-18 Score=194.67 Aligned_cols=292 Identities=12% Similarity=-0.046 Sum_probs=180.6
Q ss_pred hhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCcccHHHHHHHHHH---HHhcCcHHHHHHHHHHHHhCCCCCCHhhHH
Q 046930 621 VVDYSTIVAALCRE--GYVNKALDLCAFAKNKGITVNIVTYNTVIHS---LCRQGCFVEAFRLFDSLERIDMVPSEVSYA 695 (965)
Q Consensus 621 ~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 695 (965)
..++..++.++.+. +++++|+..|+++++..+. +...+..+..+ +...++.++|++.++++++.+ +.+..++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~ 213 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence 44555555555543 4688999999988887433 55566655554 345577788888888888754 23355555
Q ss_pred HHHHHHH----ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHH
Q 046930 696 TLIYNLC----KEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVING 770 (965)
Q Consensus 696 ~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 770 (965)
.+...+. ..|++++|.+++++++... +.+..++..++.+|...|++++|+..++++.+. .|+ ..++..++.+
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHH
Confidence 5554443 3467788999998888752 456778888899999999999999999998874 664 5577777766
Q ss_pred HHhc-------------------CCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchh
Q 046930 771 FCQK-------------------GDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLE 830 (965)
Q Consensus 771 ~~~~-------------------g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 830 (965)
|... +.+++|+..++++.+ +.|+... +..++.++...|++++|...|+++++..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---- 364 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE---- 364 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC----
Confidence 6432 346788888888865 5565544 8889999999999999999999999843
Q ss_pred hhhccccccccc----cHHHHHHH-hhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhcccccccccccc
Q 046930 831 LINRVDIEVESE----SVLNFLIS-LCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESLNAVASVASLS 905 (965)
Q Consensus 831 ~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (965)
|+.. ....++.. +...|++++|++.|++............ +
T Consensus 365 --------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~----------------- 410 (472)
T 4g1t_A 365 --------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------K----------------- 410 (472)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------H-----------------
T ss_pred --------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------H-----------------
Confidence 2222 22334333 3467999999999998765433221110 0
Q ss_pred ccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhcccccC
Q 046930 906 NQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 906 ~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
....+...+.+.+... |+.+..+..++. |...|++++|++.|+++|+..|.+
T Consensus 411 -----~~~~l~~~~~~~l~~~--p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 411 -----MKDKLQKIAKMRLSKN--GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp -----HHHHHHHHHHHHHHHC--C-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred -----HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 0001112334455556 555545544455 999999999999999999988765
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=7.3e-17 Score=181.88 Aligned_cols=378 Identities=10% Similarity=-0.002 Sum_probs=248.4
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 34 LKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
|+++++.. |.+...|..++. +.+.|++++|..+|+++++.. |.+...|...+..+.+.|++++|..+|++++..
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~---P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF---PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 45566655 567788888888 478899999999999999988 889999999999999999999999999999985
Q ss_pred CCCCCCHhhHHHHHHH-HHhcCChhHHHH----HHHHHHHCCCccchhhhhhHHhhhhhhcCCC-CCHHHHHHHHHHHHh
Q 046930 114 GALKPNVVSYTSLVIA-LCMLGRVNEVNE----LFVRMESEGLKFDVVFYSCWICGQMVDKGIK-PDTVSYTILLDGFSK 187 (965)
Q Consensus 114 ~~~~~~~~~~~~l~~~-~~~~~~~~~A~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~~ 187 (965)
. |++..|...+.. ....|+.++|.+ +|++++.. .|.. ++...|...+....+
T Consensus 76 ~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~-------------------~g~~~~~~~~w~~~~~~~~~ 133 (530)
T 2ooe_A 76 V---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK-------------------IGMEIMSYQIWVDYINFLKG 133 (530)
T ss_dssp C---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH-------------------TTTSTTCHHHHHHHHHHHHH
T ss_pred C---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH-------------------CCCCcccHHHHHHHHHHHhc
Confidence 4 588888877753 345688887776 67666542 1222 356777777776554
Q ss_pred ---------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------H
Q 046930 188 ---------EGTIEKAVGILNKMIEDRLRPN-LITYTAIIFGF-------------CKKGKLEEAFTVFKKVE------D 238 (965)
Q Consensus 188 ---------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~-------------~~~g~~~~A~~~~~~~~------~ 238 (965)
.|++++|..+|+++++. +..+ ...|....... .+.+++..|..++.... +
T Consensus 134 ~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 134 VEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999983 2212 23333222211 12345666776666532 1
Q ss_pred cC---CCCC--------HhHHHHHHHHHHhc----CCH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------
Q 046930 239 LG---LVAD--------EFVYATLIDGVCRR----GDL----DCAFRLLEDMEKKGIKPSIVTYNTIINGLCK------- 292 (965)
Q Consensus 239 ~~---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~------- 292 (965)
.. ++|+ ...|...+...... ++. +.+..+|++.+...+ .+...|..++..+.+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhh
Confidence 11 2333 13444444322221 222 356677777776522 256777777777664
Q ss_pred cCCcc-------hHHHHHcC-----CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 046930 293 VGRTS-------DAEEVSKG-----ILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI-VMCNILIKALFMVG 359 (965)
Q Consensus 293 ~g~~~-------~a~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 359 (965)
.|+++ +|..+++. .|.+...|..++..+...|++++|..+|+++++..+ .+. ..|..++..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhc
Confidence 57766 66666541 244566777777777777777777777777776432 222 46666666666777
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDG-YCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|+++++..|.++..|..++..+.+.|+.++|..+|+
T Consensus 371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 7777777777776642 1222223222222 2346777777777777777777777777777777777777777777777
Q ss_pred HHHHC
Q 046930 439 ELNEK 443 (965)
Q Consensus 439 ~~~~~ 443 (965)
+.+..
T Consensus 450 ~al~~ 454 (530)
T 2ooe_A 450 RVLTS 454 (530)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 77765
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.2e-18 Score=186.93 Aligned_cols=269 Identities=12% Similarity=0.011 Sum_probs=210.1
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
.+...|..++..+ ...|++++|+..|+.++... +.+..++..++.++...|++++|+..|+++++.+ |.+..++
T Consensus 63 ~~~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 136 (365)
T 4eqf_A 63 KDWPGAFEEGLKR-LKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKAL 136 (365)
T ss_dssp TTCTTHHHHHHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred cchhHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHH
Confidence 4445688888887 78899999999999988876 5677888899999999999999999999999887 7788899
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH----------HHHHHHHhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT----------SLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
..++.+|...|++++|+..|+++++.. |.+...+. .++.++...|++++|+..|+++++..+.
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----- 209 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD----- 209 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-----
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-----
Confidence 999999999999999999999998865 33333333 3477888899999999999998875320
Q ss_pred hhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 158 YSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
..++.++..++..+...|++++|...|+++++..+. +..+|..++.++...|++++|+..|+++.
T Consensus 210 --------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 210 --------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp --------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 126788888999999999999999999999887544 68888899999999999999999999988
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCcchHHHHHcC
Q 046930 238 DLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK-----------PSIVTYNTIINGLCKVGRTSDAEEVSKG 305 (965)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 305 (965)
+.. +.+..++..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|+.+.+..+...
T Consensus 275 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 275 EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 875 556788888889999999999999999988764211 0245677777777778887777776543
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=8.1e-17 Score=181.52 Aligned_cols=426 Identities=11% Similarity=0.029 Sum_probs=266.1
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 69 VLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
+|+..++.+ |.+..+|..++. +.+.|++++|...|++++... |.+...|...+..+.+.|++++|..+|++++.
T Consensus 1 ~le~al~~~---P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 1 MAEKKLEEN---PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp CHHHHHHHC---TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ChhhHhhhC---CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 366777777 889999999998 478999999999999999865 77888999999999999999999999999987
Q ss_pred CCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 046930 149 EGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF-SKEGTIEKAVG----ILNKMIED-RLRP-NLITYTAIIFGFC 221 (965)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~ 221 (965)
. .|++..|..++... ...|++++|.+ +|++++.. |..| +...|...+....
T Consensus 75 ~----------------------~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~ 132 (530)
T 2ooe_A 75 K----------------------VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLK 132 (530)
T ss_dssp T----------------------CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred c----------------------CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHh
Confidence 5 36777787777533 34677766655 77777653 4333 5677777777655
Q ss_pred h---------cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-------------hcCCHhHHHHHHHHHHHCCCCCC
Q 046930 222 K---------KGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVC-------------RRGDLDCAFRLLEDMEKKGIKPS 279 (965)
Q Consensus 222 ~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~g~~~~ 279 (965)
+ .|+++.|..+|++.++....+....|........ +.+++..|..++.+..
T Consensus 133 ~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~------- 205 (530)
T 2ooe_A 133 GVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE------- 205 (530)
T ss_dssp HSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHH-------
T ss_pred cCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 4 6889999999999988321111233333222111 1122333333333211
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHcC----CCCC--------HHHHHHHHHHhhh----cCCh----hHHHHHHHHHHHc
Q 046930 280 IVTYNTIINGLCKVGRTSDAEEVSKG----ILGD--------VVTYSTLLHGYIE----EDNV----NGILETKQRLEEA 339 (965)
Q Consensus 280 ~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~--------~~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~ 339 (965)
.....++. ++|+ ...|...+..... .++. .+++.+|++++..
T Consensus 206 ------------------~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~ 267 (530)
T 2ooe_A 206 ------------------TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV 267 (530)
T ss_dssp ------------------HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh
Confidence 00011111 1222 1233333322111 1122 2556666666665
Q ss_pred CCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046930 340 GIQMDIVMCNILIKALFM-------VGALE-------DARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDE 405 (965)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 405 (965)
. +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|++
T Consensus 268 ~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 268 L-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 3356666666666654 56665 6777777776521234466677777777777777777777777
Q ss_pred HHhcCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHHcCChhhHHHHHHHHHhcccccc
Q 046930 406 LRRMSISSV-ACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA-TFAKGGVGGVLNFVYRIENLRSEIY 483 (965)
Q Consensus 406 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~a~~~~~~~~~~~~~~~ 483 (965)
+++..|.+. .+|..++..+.+.|++++|..+|++.++.. +.+...+...... +...|+.++|...+++..+..|+.
T Consensus 347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~- 424 (530)
T 2ooe_A 347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI- 424 (530)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-
T ss_pred HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-
Confidence 777666553 467777777777777777777777777642 1122222221111 234677777777777776666543
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-c--chhcHHHHHHHHHhcCcchhhhhhhHHHHHhcC
Q 046930 484 DIICNDVISFLCKRGSSEVASELYMFMRKRGSV-V--TDQSYYSILKGLDNEGKKWLIGPLLSMFVKENG 550 (965)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (965)
..+|..++..+.+.|+.++|..+|++++..++. | ....|...+.-....|+.+.+..+.....+..|
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 356677777777777777777777777665432 2 123555555555666777777766666666554
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=8.4e-19 Score=188.46 Aligned_cols=308 Identities=12% Similarity=0.012 Sum_probs=218.9
Q ss_pred HccCCchHHHH-HHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC
Q 046930 22 IKRNDPEKALL-VLKDCLRNHGTLP--SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG 98 (965)
Q Consensus 22 ~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (965)
...|++++|+. .|.+++...+..| +...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCc
Confidence 34578889988 8887775443333 34568889999999999999999999999998 889999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHH
Q 046930 99 KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSY 178 (965)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 178 (965)
++++|+..|++++... |.+..++..++.++...|++++|+..|+++++..+......... ... .+.......+
T Consensus 113 ~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 185 (368)
T 1fch_A 113 QELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA---EEG--AGGAGLGPSK 185 (368)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH---HHH--hhhhcccHHH
Confidence 9999999999999987 77888999999999999999999999999998754221110000 000 0000001111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 046930 179 TILLDGFSKEGTIEKAVGILNKMIEDRLRP-NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR 257 (965)
Q Consensus 179 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (965)
..+...+ ..|++++|...|+++++..+.. +..++..++.++...|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN 263 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 1233333 7889999999999998864432 57888888999999999999999999988875 5567888888999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 046930 258 RGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLE 337 (965)
Q Consensus 258 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (965)
.|++++|...|+++.+... .+..++..++.++.+.|++++|...++ ++.
T Consensus 264 ~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------------------~al 312 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFL------------------------------EAL 312 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH------------------------------HHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHH------------------------------HHH
Confidence 9999999999999887632 256666777777776776666666543 333
Q ss_pred HcCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 046930 338 EAGI----------QMDIVMCNILIKALFMVGALEDARALYQAMP 372 (965)
Q Consensus 338 ~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (965)
...+ +....+|..+..++...|++++|..++.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 2211 1125667777777777777777777665443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.9e-17 Score=184.49 Aligned_cols=222 Identities=10% Similarity=-0.063 Sum_probs=147.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-----
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDEN------VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG----- 114 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 114 (965)
....|+.++.++...|++++|++.|+++++.. ...|....+|..++.+|...|++++|+..|++++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567778888888888888888888776531 0115556678888888888888888888888877531
Q ss_pred CC-CCCHhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH---Hhc
Q 046930 115 AL-KPNVVSYTSLVIALCML--GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF---SKE 188 (965)
Q Consensus 115 ~~-~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~---~~~ 188 (965)
.. +..+.++..++.++... +++++|+..|+++++..| .++..+..+..++ ...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p---------------------~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP---------------------KNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHHHHS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhcCc
Confidence 01 12345666666665554 467888888888877532 2355555555443 345
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHH
Q 046930 189 GTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----KGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 264 (965)
++.++|++.|+++++.++. +..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|
T Consensus 189 ~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHH
Confidence 6777888888888776543 56666655554443 356778888888887765 55677778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 265 FRLLEDMEKKGIKPSIVTYNTIINGLC 291 (965)
Q Consensus 265 ~~~~~~~~~~g~~~~~~~~~~l~~~~~ 291 (965)
...+++..+..+. +..++..++.+|.
T Consensus 267 ~~~~~~al~~~p~-~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 267 IELLKKALEYIPN-NAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 8888888776333 5566666666654
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=9.7e-18 Score=180.14 Aligned_cols=265 Identities=14% Similarity=0.043 Sum_probs=227.9
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
...+..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|+..|+.+++.+ |.+..++..
T Consensus 64 ~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~ 137 (368)
T 1fch_A 64 HPQPFEEGLRR-LQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALMA 137 (368)
T ss_dssp CSSHHHHHHHH-HHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred hHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC---CCCHHHHHH
Confidence 45788888887 89999999999999999865 5678889999999999999999999999999998 789999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH----------------HHHHHHHhcCChhHHHHHHHHHHHCCCcc
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT----------------SLVIALCMLGRVNEVNELFVRMESEGLKF 153 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (965)
++.++...|++++|+..|++++... |.+...+. .+...+ ..|++++|+..|+++++..+.
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~- 213 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT- 213 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC-
Confidence 9999999999999999999999876 44444443 244444 899999999999999886420
Q ss_pred chhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046930 154 DVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVF 233 (965)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 233 (965)
.++..++..++.++...|++++|...|+++++..+. +..++..++.++...|++++|+..|
T Consensus 214 ------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 214 ------------------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp ------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 125889999999999999999999999999987543 6889999999999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCcchHHHHH
Q 046930 234 KKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKP----------SIVTYNTIINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~ 303 (965)
+++.+.. +.+..++..+..+|.+.|++++|...|+++.+..... ...+|..++.++...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9999875 5678899999999999999999999999998753221 1678888889999999999988876
Q ss_pred c
Q 046930 304 K 304 (965)
Q Consensus 304 ~ 304 (965)
.
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 5
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.1e-17 Score=176.44 Aligned_cols=268 Identities=11% Similarity=-0.016 Sum_probs=227.0
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
.....+..++..+ ...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++++.+ |.+..++
T Consensus 19 ~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~ 92 (327)
T 3cv0_A 19 MYHENPMEEGLSM-LKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVH 92 (327)
T ss_dssp GGSSCHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hhhHHHHHHHHHH-HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCCHHHH
Confidence 3445778888887 79999999999999999876 4578889999999999999999999999999998 7889999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH--------------HH-HHHhcCChhHHHHHHHHHHHCCCc
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL--------------VI-ALCMLGRVNEVNELFVRMESEGLK 152 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~ 152 (965)
..++.++...|++++|+..|++++... |.+...+..+ +. ++...|++++|...++++.+..
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 168 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-- 168 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--
Confidence 999999999999999999999999875 4455555544 33 4778899999999999998753
Q ss_pred cchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046930 153 FDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTV 232 (965)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 232 (965)
+.+..++..++..+...|++++|...|+++.+..+. +..++..++.++...|++++|...
T Consensus 169 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 169 -------------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 246888999999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCcchHHH
Q 046930 233 FKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKP-----------SIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
|+++.+.. +.+...+..+..++...|++++|.+.++++....... +...+..+..++...|++++|..
T Consensus 229 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 229 YNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99998875 5578889999999999999999999999998763321 36678888889999999999988
Q ss_pred HHcCC
Q 046930 302 VSKGI 306 (965)
Q Consensus 302 ~~~~~ 306 (965)
+++..
T Consensus 308 ~~~~~ 312 (327)
T 3cv0_A 308 TYAQN 312 (327)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 87643
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.4e-18 Score=177.36 Aligned_cols=306 Identities=15% Similarity=0.125 Sum_probs=146.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN 137 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (965)
-+.|++++|.+.++++ + .+.+|+.++.++.+.|++.+|++.|.++ +|...|..++.++...|+++
T Consensus 14 ~~~~~ld~A~~fae~~---~-----~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC---N-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC---C-----ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHH
Confidence 3567788999999887 2 1258999999999999999999999763 46668888888899999999
Q ss_pred HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 138 EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217 (965)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 217 (965)
+|+..++.+++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++
T Consensus 79 eAi~yl~~ark~----------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IG 129 (449)
T 1b89_A 79 ELVKYLQMARKK----------------------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 129 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT-------CC---------
T ss_pred HHHHHHHHHHHh----------------------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHH
Confidence 999987777653 3557778889999999999999888874 35777999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 046930 218 FGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTS 297 (965)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 297 (965)
..|...|++++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 9999999999999999876 47888999999999999999999888 27889999999999999999
Q ss_pred hHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHchhCC
Q 046930 298 DAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFM--VGALEDARALYQAMPEMN 375 (965)
Q Consensus 298 ~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 375 (965)
.|......+...+.....++..|.+.|.+++|+.+++..+... +.-...|+-|...|++ .++..+.++.|..- .+
T Consensus 195 lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--in 271 (449)
T 1b89_A 195 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VN 271 (449)
T ss_dssp HHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SC
T ss_pred HHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hc
Confidence 9988776666666666678888999999999999999888665 4556777777776765 44555555555432 23
Q ss_pred Ccc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHH
Q 046930 376 LVA------NSVTYSTMIDGYCKLGRIEEALEIFDELRRM------------SISSVACYNCIINGLC 425 (965)
Q Consensus 376 ~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~ 425 (965)
++| +...|..+...|...++++.|....-+-... .+.+...|...+..|.
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 333 3457888899999999999887644332211 2446666776666666
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.6e-18 Score=184.13 Aligned_cols=263 Identities=12% Similarity=0.005 Sum_probs=198.4
Q ss_pred HHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHH
Q 046930 595 KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVE 674 (965)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 674 (965)
.+...|+.++|...+..+.... |.+..+|..++..+...|++++|+..|+++++..+ .+..+|..++.+|...|++++
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccccHHH
Confidence 3333333333333333333322 24688999999999999999999999999998753 378899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-Hhh----------HHHHHHHHHccCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCC
Q 046930 675 AFRLFDSLERIDMVPS-EVS----------YATLIYNLCKEGQLLDAKKLFDRMVLKGFKP--STRIYNSFIDGYCKFGQ 741 (965)
Q Consensus 675 A~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 741 (965)
|+..|+++++.. |+ ... +..+...+...|++++|+++|+++++.. +. +..++..++.+|...|+
T Consensus 152 A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 152 ACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCC
Confidence 999999998853 33 222 3345788999999999999999999862 22 68899999999999999
Q ss_pred HHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh-HHHHHHHHHHhcCCCHHHHHHHH
Q 046930 742 LEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF-LGFLYLVKGLCTKGRMEEARSIL 819 (965)
Q Consensus 742 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~eA~~~~ 819 (965)
+++|+..|+++++. .| +..+|..++.+|...|++++|++.|+++++ +.|+. ..+..++.++...|++++|...|
T Consensus 229 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 229 FNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999984 56 577999999999999999999999999976 56764 45889999999999999999999
Q ss_pred HHHHhcCcchhhhhcccc-ccccccHHHHHHHhhhcCcHHHHHHHHHH
Q 046930 820 REMLQSKSVLELINRVDI-EVESESVLNFLISLCEQGSILEAIAILDE 866 (965)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 866 (965)
+++++..+.......... ......+..++..+...|+.+.|..+.++
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999985432110000000 00234567777788899999999888765
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.1e-18 Score=177.74 Aligned_cols=309 Identities=15% Similarity=0.136 Sum_probs=148.9
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 95 CKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
.+.|++++|.++++++- ++.+|..++.++.+.|++++|++.|.+. +|
T Consensus 14 ~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika--------------------------~D 60 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------------------------DD 60 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--------------------------CC
Confidence 47888999999999972 2349999999999999999999999653 57
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDG 254 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (965)
..+|..++..+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~ 131 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 131 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTT-------CC-----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHH
Confidence 778999999999999999999988877764 3457888999999999999999988884 3677799999999
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHH
Q 046930 255 VCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQ 334 (965)
Q Consensus 255 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (965)
|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.... ++.+|..++.+|...|+++.|..+..
T Consensus 132 ~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~-~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-STRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC-CchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999976 368999999999999999999998874 89999999999999999999966554
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC-
Q 046930 335 RLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKL--GRIEEALEIFDELRRMSI- 411 (965)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~- 411 (965)
.+ ...+.....++..|.+.|++++|..+++..+... +-....|+.+..+|++- ++..+.++.|..-....+
T Consensus 202 ~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 202 HI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp TT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHH
T ss_pred HH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHH
Confidence 32 2344445568889999999999999999998765 45677788887777764 455566666553332223
Q ss_pred ----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChh
Q 046930 412 ----SSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVG 466 (965)
Q Consensus 412 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 466 (965)
.+...|..+...|.+.++++.|... |.+. +++......+.....+..+.+
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 3566799999999999999988874 4444 344444444444445544443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.5e-16 Score=162.21 Aligned_cols=274 Identities=11% Similarity=0.060 Sum_probs=215.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhhcCccc--cchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHH
Q 046930 561 VQYLCLNDVTNALLFIKNMKEISSTV--TIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVN 638 (965)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 638 (965)
...+..|++.+|+..+++....++.. .....+++.++..|+.+.|...+... .+++..++..++..+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34566789999999998876665543 23355678999999999999866542 3446888899999999999999
Q ss_pred HHHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHH
Q 046930 639 KALDLCAFAKNKGITV-NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRM 717 (965)
Q Consensus 639 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (965)
+|++.++++...+..| +...+..++.++...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998876433 566788888999999999999999987 356788999999999999999999999999
Q ss_pred HHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 718 VLKGFKPSTRIY---NSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 718 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
++. .|+.... ..++..+...|++++|+..|+++.+. .+.+...|+.++.++...|++++|++.|+++++ ..|
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p 231 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDS 231 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 986 3553211 22334445568999999999999986 244678999999999999999999999999976 567
Q ss_pred ChH-HHHHHHHHHhcCCCHHH-HHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHH
Q 046930 795 DFL-GFLYLVKGLCTKGRMEE-ARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAIL 864 (965)
Q Consensus 795 ~~~-~~~~l~~~~~~~g~~~e-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 864 (965)
+.. ++..++..+...|+.++ +..+++++++ .+|+...+.++ ..+.+.+++|..-|
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~------------~~P~~~~~~d~---~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD------------AHRSHPFIKEY---RAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------HCTTCHHHHHH---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------------hCCCChHHHHH---HHHHHHHHHHHHHc
Confidence 654 58889999999999976 5689999998 56665544443 23556666665544
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=1.8e-16 Score=166.87 Aligned_cols=253 Identities=12% Similarity=0.080 Sum_probs=217.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCCchH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGN-MSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
|....+|+.++..+ ...|++++|+..|++++... |.+..+|..++.++...|+ +++|+..|+++++.+ |.+..
T Consensus 94 p~~~~a~~~lg~~~-~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~~~~ 167 (382)
T 2h6f_A 94 DKFRDVYDYFRAVL-QRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHH
T ss_pred hhhHHHHHHHHHHH-HHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CCCHH
Confidence 55667888888877 89999999999999999977 5678889999999999997 999999999999999 89999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+|+.++.++...|++++|+..|++++..+ |.+..+|..++.++...|++++|+..|+++++.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-------------- 231 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-------------- 231 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------------
Confidence 99999999999999999999999999988 78899999999999999999999999999998753
Q ss_pred hhhcCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSK-EGTIEKA-----VGILNKMIEDRLRPNLITYTAIIFGFCKKG--KLEEAFTVFKKVE 237 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 237 (965)
.+..+|+.+..++.. .|..++| ++.|+++++..+. +...|+.+..++...| ++++|++.+.++
T Consensus 232 -------~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~- 302 (382)
T 2h6f_A 232 -------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL- 302 (382)
T ss_dssp -------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-
T ss_pred -------CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-
Confidence 568899999999998 6665777 5899999987655 7889999999998888 689999999988
Q ss_pred HcCCCCCHhHHHHHHHHHHhcC---------CHhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh
Q 046930 238 DLGLVADEFVYATLIDGVCRRG---------DLDCAFRLLEDM-EKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~g~~~~~~~~~~l~~~~~~ 292 (965)
+.. +.+...+..++.+|.+.| .+++|+++|+++ .+..+ .....|..+...+..
T Consensus 303 ~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 303 QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQS 365 (382)
T ss_dssp TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHH
T ss_pred ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHH
Confidence 443 567788889999998874 258999999998 66522 245567777666543
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=8.3e-17 Score=169.61 Aligned_cols=282 Identities=11% Similarity=0.006 Sum_probs=211.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
+...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|+++++.. |.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHH
Confidence 34457788899999999999999999999988 7899999999999999999999999999999976 678889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH-HH-HHHhcCCHHHHHHHHHHHHH
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL-LD-GFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~~ 203 (965)
++.++...|++++|...++++.+..+........ + ....|+......+ .. .+...|++++|...++++.+
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV--N------LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH--H------hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999999999999999864321100000 0 0000111111122 22 36778899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 046930 204 DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTY 283 (965)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 283 (965)
..+. +..++..++.++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +..++
T Consensus 167 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 243 (327)
T 3cv0_A 167 MNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVM 243 (327)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 7544 78888889999999999999999999998875 556778888889999999999999999988875322 45555
Q ss_pred HHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-----------CHHHHHHHH
Q 046930 284 NTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQM-----------DIVMCNILI 352 (965)
Q Consensus 284 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~ 352 (965)
..++..+...|++++| +..++++....+.. +...+..+.
T Consensus 244 ~~l~~~~~~~g~~~~A------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLA------------------------------AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp HHHHHHHHHTTCHHHH------------------------------HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHH------------------------------HHHHHHHHHhCCccccccccchhhcCHHHHHHHH
Confidence 5555555555555554 44555554443221 466788888
Q ss_pred HHHHhcCCHHHHHHHHHHchh
Q 046930 353 KALFMVGALEDARALYQAMPE 373 (965)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~ 373 (965)
..+...|++++|..+++...+
T Consensus 294 ~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 888899999999888876654
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=1.2e-16 Score=155.69 Aligned_cols=200 Identities=16% Similarity=0.067 Sum_probs=162.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
|+++..+..++..+...|++++|+..|+++++.+ |.++.++..++.++.+.|++++|+..|+++++.+ |.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 5677788899999999999999999999999998 8899999999999999999999999999999987 7778899
Q ss_pred HHHHHHHHhc-----------CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 046930 124 TSLVIALCML-----------GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE 192 (965)
Q Consensus 124 ~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 192 (965)
..++.++... |++++|+..|+++++..| .+..+|..+..++...|+++
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP---------------------RYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc---------------------ccHHHHHHHHHHHHHcCChH
Confidence 9999999999 999999999999987642 45788888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046930 193 KAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDME 272 (965)
Q Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 272 (965)
+|+..|+++++.. .+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|...|++.-
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999887 588888899999999999999999999998876 5577788888888889999999988887654
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=5.8e-16 Score=157.95 Aligned_cols=259 Identities=8% Similarity=0.007 Sum_probs=212.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHh
Q 046930 183 DGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLD 262 (965)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 262 (965)
+-....|++..|+..++......+.+.......+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 34566899999999998765443222234556778999999999999987755 2 3667778888899999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC
Q 046930 263 CAFRLLEDMEKKGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGI 341 (965)
Q Consensus 263 ~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 341 (965)
+|++.++++...+..| +...+..+...+...|++++|++.++. +.+..++..++..+.+.|++++|++.++.+.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 9999999999876444 567788888999999999999999998 8889999999999999999999999999998875
Q ss_pred CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 046930 342 QMDIVMC---NILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYN 418 (965)
Q Consensus 342 ~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (965)
|+.... ..++..+...|++++|..+|+++.+.. +.+..+++.++.++...|++++|+..|+++++..|.++.++.
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 332211 123344445689999999999998874 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHh
Q 046930 419 CIINGLCKSGMVDM-ATEVFIELNEKGLSLYVGM 451 (965)
Q Consensus 419 ~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~ 451 (965)
.++..+...|+.++ +..+++++++. .|+...
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~ 270 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF 270 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH
Confidence 99999999999876 57888998876 555443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=1.4e-16 Score=155.08 Aligned_cols=200 Identities=14% Similarity=0.074 Sum_probs=169.2
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...++.++..+ ...|++++|+..|++++... |.++.++..++.++.+.|++++|+..|+++++.+ |.++.+
T Consensus 2 p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQL-YALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred CCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHH
Confidence 77888999999987 89999999999999999865 5678899999999999999999999999999999 889999
Q ss_pred HHHHHHHHHhc-----------CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccch
Q 046930 87 CSSVVSGFCKI-----------GKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155 (965)
Q Consensus 87 ~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (965)
+..++.++... |++++|+..|+++++.+ |.+...+..++.++...|++++|+..|+++++..
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 148 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE----- 148 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----
Confidence 99999999999 99999999999999987 7788899999999999999999999999998741
Q ss_pred hhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046930 156 VFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKK 235 (965)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 235 (965)
.++..+..+..++...|++++|...|+++++..+. +...+..+..++...|++++|+..|++
T Consensus 149 -----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 149 -----------------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred -----------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 56888999999999999999999999999997654 788899999999999999999999987
Q ss_pred HH
Q 046930 236 VE 237 (965)
Q Consensus 236 ~~ 237 (965)
..
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 64
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.8e-15 Score=153.05 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=198.8
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc----
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---- 83 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 83 (965)
.....|..++..+ ...|++++|+..|+.++... .+..++..++.++...|++++|+..|+.+++.++..+++
T Consensus 3 ~~a~~~~~~g~~~-~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 3 SMADKEKAEGNKF-YKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 3456788888887 89999999999999999876 667889999999999999999999999999876311111
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~ 163 (965)
..++..++.++...|++++|+..|++++... |+. ..+...|++++|...++++....
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~~~~------------- 135 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH---RTA-------DILTKLRNAEKELKKAEAEAYVN------------- 135 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC---chh-------HHHHHHhHHHHHHHHHHHHHHcC-------------
Confidence 6899999999999999999999999999864 453 44667788999999999998753
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 046930 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVA 243 (965)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 243 (965)
+.+...+..++..+...|++++|...|+++++..+. +..++..++.++...|++++|+..|+++.+.. +.
T Consensus 136 --------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~ 205 (258)
T 3uq3_A 136 --------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PN 205 (258)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred --------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HH
Confidence 135678889999999999999999999999987544 78899999999999999999999999999886 55
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 244 DEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+...+..+..++.+.|++++|...+++..+.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7888999999999999999999999998875
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=6.5e-15 Score=160.89 Aligned_cols=223 Identities=12% Similarity=0.010 Sum_probs=170.4
Q ss_pred chhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhCCCCCCHh
Q 046930 620 DVVDYSTIVAALCREG---YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ----GCFVEAFRLFDSLERIDMVPSEV 692 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~ 692 (965)
++.++..++..|.+.| +.++|+..|++..+.|.. +...+..|+..|... +++++|+.+|++.. . -++.
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 3458888999999999 999999999999998744 666667788888665 79999999999987 3 3456
Q ss_pred hHHHHHHH-H--HccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHhhhCCCCCChhHH
Q 046930 693 SYATLIYN-L--CKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFG-----QLEEAFKFLHDLKINCLEPDKFTV 764 (965)
Q Consensus 693 ~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~ 764 (965)
.+..|... + ...+++++|+++|++..+.| +...+..|+.+|. .| ++++|+..|++.. ..+..++
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHH
Confidence 67777766 4 56899999999999999876 7778889999887 56 9999999999987 2356788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCcchhhhhccc
Q 046930 765 SAVINGFCQ----KGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCT----KGRMEEARSILREMLQSKSVLELINRVD 836 (965)
Q Consensus 765 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 836 (965)
..|+..|.. ..++++|+++|++..+.| +......|+.+|.. ..+.++|..+|+++.+.+.
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--------- 389 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--------- 389 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC---------
Confidence 888888865 349999999999997755 23346678888874 4589999999999988532
Q ss_pred cccccccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 837 IEVESESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 837 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
+........+......++.++|..++++...
T Consensus 390 --~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 --PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp --HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1222222222223345678888888877543
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=5.8e-15 Score=150.55 Aligned_cols=253 Identities=11% Similarity=-0.016 Sum_probs=200.3
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
+...+...+..+ ...|++++|+..|+.+++.. +.+..++..++.++...|++++|+..|+.+++..........++.
T Consensus 2 n~~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFL-FKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHH-HTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 345666777776 79999999999999999866 345668889999999999999999999999984321123355689
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++.++...|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++..
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------ 138 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------------------ 138 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------------------
Confidence 99999999999999999999999976 6777899999999999999999999999988753
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK---LEEAFTVFKKVEDLG-LVAD 244 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~ 244 (965)
+.+..+|..+...+...+++++|.+.|+++++..+. +...+..+..++...|+ +++|...|+++.+.. ..|+
T Consensus 139 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 139 ---TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 245777888883444456999999999999987544 57888888888888888 888999999887652 1122
Q ss_pred ------HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 245 ------EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289 (965)
Q Consensus 245 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 289 (965)
..+|..+...|...|++++|...|+++.+..+. +...+..+...
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~ 264 (272)
T 3u4t_A 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGLKMK 264 (272)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhhh
Confidence 257778889999999999999999999987433 55555554443
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=2.4e-15 Score=164.31 Aligned_cols=349 Identities=12% Similarity=0.025 Sum_probs=202.2
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNM---SRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
+...+ .+.|++++|+..|+.+.+. | ++.++..++.+|...|+. ++|+..|+++.+. ++.++..++.
T Consensus 9 la~~~-~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEA-LKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGR 77 (452)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC----------------------------------CHHHHHH
T ss_pred HHHHH-HhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHH
Confidence 44444 5677777777777776653 2 344455666666667776 7777777777643 3356667777
Q ss_pred HHHhcC-----ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH---HHHHHHHHCCCccchhhhhhHHhh
Q 046930 93 GFCKIG-----KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN---ELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 93 ~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.+...| ++++|+.+|+++.+.+ ++.++..++..|...+..+++. +.+.+..+.
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--------------- 138 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--------------- 138 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---------------
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---------------
Confidence 555554 6667777777777643 3336666777776666544333 333333321
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG---KLEEAFTVFKKVEDLGL 241 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 241 (965)
.++..+..|...|...+.++++........+.-...++.++..+..+|...| ++++|+..|++..+.|
T Consensus 139 --------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g- 209 (452)
T 3e4b_A 139 --------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG- 209 (452)
T ss_dssp --------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-
T ss_pred --------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-
Confidence 2345555666666666644433333222221111123336666666777777 6777777777777766
Q ss_pred CCCHhHHHHHHHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHH
Q 046930 242 VADEFVYATLIDGVCRR----GDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLL 317 (965)
Q Consensus 242 ~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~ 317 (965)
+++...+..+...|... +++++|..+|++.. . -+...+..+...|...
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~------------------------ 261 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDF------------------------ 261 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHS------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhC------------------------
Confidence 44555545556555443 56777777777665 2 1334444444432210
Q ss_pred HHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHH
Q 046930 318 HGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVG-----ALEDARALYQAMPEMNLVANSVTYSTMIDGYCK 392 (965)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (965)
...+++++|+..|++..+.+ +...+..|...|. .| ++++|..+|++.. . .+..+...|...|..
T Consensus 262 ---~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 262 ---PELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRR 330 (452)
T ss_dssp ---GGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHC
Confidence 23567778888888887766 5677777777776 55 8999999999888 3 466777778877766
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 046930 393 ----LGRIEEALEIFDELRRMSISSVACYNCIINGLCK----SGMVDMATEVFIELNEKG 444 (965)
Q Consensus 393 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 444 (965)
..++++|...|++..+.+ +..+...++.+|.. ..++++|..+|+...+.|
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 348999999999888754 45567788888874 457888999998888776
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=6.4e-15 Score=155.09 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=188.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK-PELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
..++..++.++...|++++|+..|+++++.+ |.+..+|+.++.++...|+ +++|+..|++++..+ |.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 4578888899999999999999999999999 8899999999999999997 999999999999987 778889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
++.++...|++++|+..|+++++.++ .+..+|..+..++.+.|++++|+..|+++++.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP---------------------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDA---------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCc---------------------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99999999999999999999998653 578899999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCC
Q 046930 206 LRPNLITYTAIIFGFCK-KGKLEEA-----FTVFKKVEDLGLVADEFVYATLIDGVCRRG--DLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~ 277 (965)
+. +..+|+.+..++.. .|..++| +..|++++... +.+...|+.+...+...| ++++|...+.++ +. .+
T Consensus 231 P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p 306 (382)
T 2h6f_A 231 VR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SH 306 (382)
T ss_dssp TT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TC
T ss_pred CC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CC
Confidence 65 88999999999998 5665777 58899988876 557888988888888877 688899888887 33 23
Q ss_pred CCHHHHHHHHHHHHhcC
Q 046930 278 PSIVTYNTIINGLCKVG 294 (965)
Q Consensus 278 ~~~~~~~~l~~~~~~~g 294 (965)
.+...+..++.+|.+.|
T Consensus 307 ~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDML 323 (382)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35667777777776654
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.9e-15 Score=148.22 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=178.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC--CCC----HhhH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM--VPS----EVSY 694 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 694 (965)
...+..++..+...|++++|+..|+++.+.. .+...+..++.+|...|++++|+..+.++++... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5677888888999999999999999988876 5788888899999999999999999998887431 112 4678
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHh
Q 046930 695 ATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQ 773 (965)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 773 (965)
..+..++...|++++|++.|+++++. .|+ ...+...|++++|+..++++... .| +..++..++..+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 88888899999999999999998874 444 34566778889999999998874 56 45678888888889
Q ss_pred cCCHHHHHHHHHHhHhCCCCCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccc-cccHHHHHHHh
Q 046930 774 KGDMEGALGFFLDFNTKGVSPD-FLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVE-SESVLNFLISL 851 (965)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 851 (965)
.|++++|++.|+++++ ..|+ ...+..++.++...|++++|...++++++. .|+ ...+..++..+
T Consensus 152 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------------DPNFVRAYIRKATAQ 217 (258)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------CHHHHHHHHHHHHHH
Confidence 9999999999999876 4454 445888898999999999999999998873 343 44566777788
Q ss_pred hhcCcHHHHHHHHHHHhhc
Q 046930 852 CEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 852 ~~~g~~~~A~~~~~~~~~~ 870 (965)
...|++++|++.+++....
T Consensus 218 ~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 8899999999998886543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=3.3e-14 Score=142.97 Aligned_cols=203 Identities=13% Similarity=-0.002 Sum_probs=157.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|++.|++++... +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHH
Confidence 4567777788888888888888888888877 6777888888888888888888888888888765 5667778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
+.++...|++++|+..|+++.+.+. .+.+...+..++.++...|++++|...|+++.+..+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTL-------------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTT-------------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCcc-------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 8888888888888888888876111 012466777788888888888888888888887643
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046930 207 RPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 207 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 275 (965)
. +...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 173 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 173 N-QPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3 57777788888888888888888888887764 4566677777788888888888888888887763
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=6.2e-15 Score=147.40 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=105.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
.+..+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|++++... +.+...+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 96 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYG 96 (243)
T ss_dssp --------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHH
Confidence 34445555555566666666666666665554 4555566666666666666666666666665544 445555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
++.++...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.+..
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG---------------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT---------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6666666666666666666655432 1344555555566666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 206 LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+. +...+..++.++...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 156 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 156 EN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 22 45555556666666666666666666665553 334555566666666666666666666666554
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=1.7e-15 Score=154.81 Aligned_cols=249 Identities=13% Similarity=0.019 Sum_probs=195.3
Q ss_pred HccCCchHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTL--PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK 99 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 99 (965)
...|++++|+..|+.++...+.. .+..++..++.++...|++++|+..|+++++.+ |.+..++..++.+|...|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTC
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccC
Confidence 45688999999999988753322 246778899999999999999999999999998 7889999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHH
Q 046930 100 PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYT 179 (965)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 179 (965)
+++|+..|++++... |.+..++..++.++...|++++|...|+++.+.. |+.....
T Consensus 93 ~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----------------------~~~~~~~ 148 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----------------------PNDPFRS 148 (275)
T ss_dssp HHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHH
T ss_pred HHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------CCChHHH
Confidence 999999999999976 6678899999999999999999999999998753 3333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHhHHHHHHHHHH
Q 046930 180 ILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV---ADEFVYATLIDGVC 256 (965)
Q Consensus 180 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~ 256 (965)
..+..+...|++++|...|.+.....+. +...+. ++..+...++.++|...+..+...... .+...+..+..++.
T Consensus 149 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 226 (275)
T 1xnf_A 149 LWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226 (275)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 4445556779999999999888876433 444443 666777888899999999988755311 12567888899999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 046930 257 RRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 257 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 303 (965)
+.|++++|...|+++....+. + +.....++...|++++|++.+
T Consensus 227 ~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 227 SLGDLDSATALFKLAVANNVH-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCHHHHHHHHHHHHTTCCT-T---CHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhCCch-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999987422 2 223345666677777776554
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=7.1e-14 Score=142.29 Aligned_cols=226 Identities=10% Similarity=-0.047 Sum_probs=192.3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhh
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCR----QGCFVEAFRLFDSLERIDMVPSEVS 693 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 693 (965)
+.++.++..++..+...|++++|+..|++..+.+ +..++..++..|.. .+++++|+..|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3468888999999999999999999999998843 56788889999999 999999999999999865 6778
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhHHH
Q 046930 694 YATLIYNLCK----EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCK----FGQLEEAFKFLHDLKINCLEPDKFTVS 765 (965)
Q Consensus 694 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 765 (965)
+..+...|.. .+++++|++.|++..+.+ +...+..++.+|.. .|++++|+..|+++.+.+ +..++.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8888888998 999999999999999864 77889999999999 999999999999999854 566788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCcchhhhhcccc
Q 046930 766 AVINGFCQ----KGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCT----KGRMEEARSILREMLQSKSVLELINRVDI 837 (965)
Q Consensus 766 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 837 (965)
.++..|.. .+++++|++.|++..+.+ +...+..++.++.. .|++++|+..|+++++..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------- 216 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----------- 216 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----------
Confidence 88888887 899999999999998753 34567889999999 999999999999998732
Q ss_pred ccccccHHHHHHHhhh----cCcHHHHHHHHHHHhhcc
Q 046930 838 EVESESVLNFLISLCE----QGSILEAIAILDEIGYML 871 (965)
Q Consensus 838 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 871 (965)
| ......++..+.. .|++++|++.|++.....
T Consensus 217 -~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 -N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 2 4466777777877 899999999999875543
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=5.2e-14 Score=138.69 Aligned_cols=205 Identities=11% Similarity=0.049 Sum_probs=95.2
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...|..++..+ ...|++++|+..|+.++... +.+..++..++.++...|++++|+..|+.+++.+ |.+..+
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~ 78 (225)
T 2vq2_A 5 NQVSNIKTQLAMEY-MRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEI 78 (225)
T ss_dssp CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred cccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHH
Confidence 34444444444444 44555555555555554433 2334444445555555555555555555555544 444445
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 87 CSSVVSGFCKI-GKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 87 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+..++.++... |++++|+..|++++..+..+.+...+..++.++...|++++|+..|+++.+..
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------- 143 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--------------- 143 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 55555555555 55555555555554411012223344444555555555555555555544431
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
+.+..++..++.++...|++++|...|+++.+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 144 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 144 ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1224444444444445555555555555444433212344444444444444444444444444443
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=1.2e-14 Score=145.43 Aligned_cols=214 Identities=14% Similarity=0.081 Sum_probs=170.3
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
..+..|..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|+..|+.+++.+ |.+..++
T Consensus 21 ~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 94 (243)
T 2q7f_A 21 MASMTGGQQMGRG-SEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD---SSAATAY 94 (243)
T ss_dssp ----------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hHHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CcchHHH
Confidence 4455788888877 79999999999999988754 5678889999999999999999999999999988 7889999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhh
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMV 167 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (965)
..++.++...|++++|++.|+++++.. +.+...+..++.++...|++++|...++++.+..
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 155 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN----------------- 155 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------
Confidence 999999999999999999999999876 6778899999999999999999999999998753
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 046930 168 DKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV 247 (965)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (965)
+.+...+..++..+...|++++|...|+++.+..+. +..++..+..++...|++++|...++++.+.. +.+...
T Consensus 156 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~ 229 (243)
T 2q7f_A 156 ----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLA 229 (243)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred ----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHH
Confidence 246788999999999999999999999999987543 68889999999999999999999999999875 445555
Q ss_pred HHHHH
Q 046930 248 YATLI 252 (965)
Q Consensus 248 ~~~l~ 252 (965)
+..+.
T Consensus 230 ~~~~~ 234 (243)
T 2q7f_A 230 LHAKK 234 (243)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 54443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=7.4e-14 Score=140.38 Aligned_cols=203 Identities=13% Similarity=0.004 Sum_probs=168.9
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
...|..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|++.|+.+++.+ |.+..++..
T Consensus 37 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGY-LQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD---SRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHH-HHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHH
Confidence 56777788776 78899999999999988865 4567888888999999999999999999998887 678888999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhc
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDK 169 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 169 (965)
++.++...|++++|+..|++++..+..+.+...+..++.++...|++++|...|+++.+..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------- 171 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------------------- 171 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------
Confidence 9999999999999999999988721124456688888888999999999999999988753
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 170 GIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
+.+..++..++..+...|++++|...|+++.+..+ .+...+..+...+...|++++|.+.++++.+..
T Consensus 172 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 172 --RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp --SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 24577888888899999999999999999887644 367778888888899999999999999988874
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=2.2e-13 Score=138.60 Aligned_cols=226 Identities=15% Similarity=0.071 Sum_probs=191.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCC
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVKYPF 82 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 82 (965)
|.++..++.++..+ ...|++++|+..|++++. +.++.++..++.+|.. .+++++|+..|+++.+.+
T Consensus 3 ~~~~~a~~~lg~~~-~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKS-YKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----- 72 (273)
T ss_dssp --CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred CCChHHHHHHHHHH-HhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----
Confidence 55667888888877 788999999999999887 3456788888999999 999999999999998875
Q ss_pred chHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCccc
Q 046930 83 DNFVCSSVVSGFCK----IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGLKFD 154 (965)
Q Consensus 83 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 154 (965)
++.++..++.+|.. .+++++|+..|+++.+. .++.++..++.+|.. .+++++|+..|+++.+.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----- 143 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----- 143 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----
Confidence 56788999999999 99999999999999884 377888899999998 99999999999998874
Q ss_pred hhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 046930 155 VVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----KGKL 226 (965)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 226 (965)
.+..++..+...|.. .+++++|...|++..+.+ +..++..+..+|.. .+++
T Consensus 144 ------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 144 ------------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp ------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred ------------------CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 356777788888887 899999999999998864 56778888888988 8999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 046930 227 EEAFTVFKKVEDLGLVADEFVYATLIDGVCR----RGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 227 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 275 (965)
++|+..|++..+.+ +...+..+..+|.. .+++++|...|++..+.|
T Consensus 203 ~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999998875 25677778888888 899999999999988875
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.4e-14 Score=147.65 Aligned_cols=255 Identities=11% Similarity=0.014 Sum_probs=185.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC--HhhHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN--VVSYT 124 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 124 (965)
+..+...+..+...|++++|+..|+.+++.+ |.+..++..++.+|...|++++|+..|++++... ..++ ..+|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHH
Confidence 4456778888999999999999999999988 7788899999999999999999999999999832 1111 23488
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.++.++...|++++|+..|+++.+..+ .+..+|..++..|...|++++|...|+++++.
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDT---------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST---------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCc---------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 899999999999999999999987532 45678889999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---HhHHHHHHHHHHHCC-CCCCH
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD---LDCAFRLLEDMEKKG-IKPSI 280 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~~~~ 280 (965)
.+. +...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+.
T Consensus 138 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 215 (272)
T 3u4t_A 138 TTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215 (272)
T ss_dssp SCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence 433 67777777734445569999999999998875 4457777778888888887 778888888876531 11221
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 046930 281 VTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIK 353 (965)
Q Consensus 281 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 353 (965)
. -..+ ..++..+...|...|++++|+..++++.+.. +.+......+..
T Consensus 216 ~-~~~~-----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 216 Y-KDEL-----------------------IEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp G-HHHH-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred c-hHHH-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 0 0000 1123344555556666666666666666654 234444444433
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.3e-14 Score=148.20 Aligned_cols=224 Identities=13% Similarity=-0.000 Sum_probs=178.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLI 698 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 698 (965)
.+..++..++..+...|++++|+..|+++.+..+ .+..+|..++.+|...|++++|+..|+++++.. +.+...+..++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 118 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHH
Confidence 4678889999999999999999999999998854 378899999999999999999999999999864 23478899999
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHH
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDME 778 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 778 (965)
.+|...|++++|++.|+++++. .|+..........+...|++++|...++++... .+++...+ .++..+...++.+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 194 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHH
Confidence 9999999999999999999985 455444445555667789999999999888874 23344444 4777778889999
Q ss_pred HHHHHHHHhHhCCCCCC-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhh
Q 046930 779 GALGFFLDFNTKGVSPD-----FLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCE 853 (965)
Q Consensus 779 ~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (965)
+|++.++++.+ ..|. ...+..++.++...|++++|...|+++++ ..|+. +......+..
T Consensus 195 ~a~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------~~p~~--~~~~~~~~~~ 258 (275)
T 1xnf_A 195 TLMERLKADAT--DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA------------NNVHN--FVEHRYALLE 258 (275)
T ss_dssp HHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------TCCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHhc--ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------CCchh--HHHHHHHHHH
Confidence 99999999854 4443 35588899999999999999999999998 34433 2333556778
Q ss_pred cCcHHHHHHHH
Q 046930 854 QGSILEAIAIL 864 (965)
Q Consensus 854 ~g~~~~A~~~~ 864 (965)
.|++++|++.+
T Consensus 259 l~~~~~a~~~~ 269 (275)
T 1xnf_A 259 LSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHC----
T ss_pred HHHHHhhHHHH
Confidence 89999999887
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1.1e-13 Score=136.47 Aligned_cols=206 Identities=13% Similarity=0.043 Sum_probs=180.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.++.++..++..+...|++++|++.|+.+++.+ |.+..++..++.++...|++++|++.|++++... |.+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~ 79 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEIN 79 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHH
Confidence 3456778889999999999999999999999988 7888999999999999999999999999999876 6778899
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046930 124 TSLVIALCML-GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMI 202 (965)
Q Consensus 124 ~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 202 (965)
..++.++... |++++|...++++++.+. .+.+...+..++.++...|++++|...|+++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPT-------------------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTT-------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcC-------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 999999999999987211 12346788899999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 203 EDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+..+. +...+..++.++...|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 141 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 141 AAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 87544 688899999999999999999999999988763257778888888889999999999999998865
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=1.5e-13 Score=130.11 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=97.7
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
++.+|+.++..+ ...|++++|+..|+++++.. |.+..++..++.+|.+.|++++|+..+..+.... |.+..++.
T Consensus 4 ~~~iy~~lG~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKK-RTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHH
Confidence 445566666655 55566666666666666554 3445555566666666666666666666665555 45555666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++..+...++++.|...+.++.... |.+..++..++.++.+.|++++|++.|+++++..+
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p----------------- 138 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP----------------- 138 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-----------------
Confidence 66666666666666666666666554 44555555666666666666666666666555421
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.+..+|..++.+|.+.|++++|.+.|+++++.
T Consensus 139 ----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 ----GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34555555666666666666666666666553
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=1.9e-13 Score=129.43 Aligned_cols=167 Identities=18% Similarity=0.188 Sum_probs=136.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
++.+|..++.+|...|++++|++.|+++++.+ |.++.++..++.+|...|++++|+..++++.... +.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHH
Confidence 56678888888888888888888888888888 7788888888888888888888888888888766 666777888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
++..+...++++.|...+.++.+.. +.+..++..+..++.+.|++++|++.|+++++..
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~---------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN---------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 8888888888888888888887653 2457778888888888888888888888888775
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 206 LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+. +..+|..++.++.+.|++++|+..|+++.+.
T Consensus 138 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 PG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 44 6778888888888888888888888888776
No 57
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=166.46 Aligned_cols=151 Identities=9% Similarity=0.020 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHH
Q 046930 655 NIVTYNTVIHSLCRQGCFVEAFRLFDSLER---IDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNS 731 (965)
Q Consensus 655 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 731 (965)
-..||++|+++|++.|++++|.++|++|.+ .|+.||..|||.|+++|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 446788888888888888888888877653 46778888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCH-HHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC------hHHHHHHHH
Q 046930 732 FIDGYCKFGQL-EEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD------FLGFLYLVK 804 (965)
Q Consensus 732 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~ 804 (965)
++.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. ..++..+++ +-+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 88888888874 67778888888888888888888777655433 455555554 2344443 223333555
Q ss_pred HHhcCC
Q 046930 805 GLCTKG 810 (965)
Q Consensus 805 ~~~~~g 810 (965)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555554
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=7.2e-13 Score=137.10 Aligned_cols=239 Identities=11% Similarity=0.037 Sum_probs=192.4
Q ss_pred ccchhhHHHHHHHHHHcc----CCc----hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCh-------h
Q 046930 7 PHQSRFFDSLIQGFCIKR----NDP----EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS-------QGNM-------S 64 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~ 64 (965)
|.+...|...+.- +.+. ++. +.|+..|++++... |.++..|..++..+.. .|++ +
T Consensus 5 ~~~~~~W~~yi~~-E~~~~~~~~~~~~~~~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 81 (308)
T 2ond_A 5 AQQVDMWKKYIQW-EKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHH-HHTCTTCCCCHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhCcccCCchHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchH
Confidence 3455677777774 3443 233 68889999999876 5678888888877763 5886 8
Q ss_pred HHHHHHHHHHh-cCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh-hHHHHHHHHHhcCChhHHHHH
Q 046930 65 RAVEVLELMSD-ENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV-SYTSLVIALCMLGRVNEVNEL 142 (965)
Q Consensus 65 ~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 142 (965)
+|..+|+++++ .+ |.+..+|..++..+...|++++|...|+++++.. |.+.. +|..++..+.+.|++++|..+
T Consensus 82 ~A~~~~~rAl~~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 82 EAANIYERAISTLL---KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHTTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhC---cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999 56 7888999999999999999999999999999865 44554 899999999999999999999
Q ss_pred HHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 143 FVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFS-KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC 221 (965)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (965)
|+++++.++ ++...|...+.... ..|++++|..+|+++++..+. +...|..++..+.
T Consensus 157 ~~~a~~~~p---------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 214 (308)
T 2ond_A 157 FKKAREDAR---------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLS 214 (308)
T ss_dssp HHHHHTSTT---------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHhcCC---------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 999987542 33445544443322 379999999999999987544 7888999999999
Q ss_pred hcCChHHHHHHHHHHHHcC-CCC--CHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046930 222 KKGKLEEAFTVFKKVEDLG-LVA--DEFVYATLIDGVCRRGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 275 (965)
+.|++++|..+|+++.... .+| ....|..++....+.|+.+.|..+++++.+..
T Consensus 215 ~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999863 343 46788888988899999999999999998763
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=5.4e-14 Score=153.13 Aligned_cols=279 Identities=11% Similarity=0.004 Sum_probs=201.8
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCC
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN---VKYPF 82 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 82 (965)
.....+...+..+ ...|++++|+..|+.++...+..+. ..++..++.++...|++++|+..|++++... ...|.
T Consensus 7 ~~~~~l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERL-CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHH-HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3344666777776 8999999999999999987532222 3578889999999999999999999876642 11145
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCC--------------------hhH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGR--------------------VNE 138 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~ 138 (965)
...++..++.++...|++++|+..|++++....-.++ ..++..++.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 5778999999999999999999999999875311122 3478889999999999 999
Q ss_pred HHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 046930 139 VNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR-PN----LIT 212 (965)
Q Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 212 (965)
|...++++.+.. ...+..+ ...++..+...+...|++++|...|+++++.... ++ ..+
T Consensus 166 A~~~~~~al~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 166 AVDFYEENLSLV----------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp HHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH----------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 999998877531 0111111 2457888899999999999999999998764111 12 236
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HHH
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLV-AD----EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK-PS----IVT 282 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~ 282 (965)
+..+..++...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++....... .+ ..+
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 309 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 788889999999999999999988754211 11 457778888999999999999999887653111 01 234
Q ss_pred HHHHHHHHHhcCCcchHHHHH
Q 046930 283 YNTIINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~a~~~~ 303 (965)
+..+...+...|++++|...+
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444444555555555544443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=9.4e-14 Score=151.24 Aligned_cols=308 Identities=12% Similarity=0.022 Sum_probs=213.3
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHhH
Q 046930 378 ANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISS----VACYNCIINGLCKSGMVDMATEVFIELNEKGL-SLYVGMH 452 (965)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 452 (965)
.....+...+..+...|++++|+..|+++.+..|.+ ..++..++..+...|++++|+..+++++.... ..+..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-- 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL-- 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH--
Confidence 445566777788888888888888888888876666 35677888888888888888888887654210 00100
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhc
Q 046930 453 KIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNE 532 (965)
Q Consensus 453 ~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 532 (965)
....++..++..+...|++++|...+++++.......
T Consensus 85 -----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------- 121 (406)
T 3sf4_A 85 -----------------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-------------- 121 (406)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------
T ss_pred -----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--------------
Confidence 0113455666778888888888888887665210000
Q ss_pred CcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhh
Q 046930 533 GKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGA 612 (965)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 612 (965)
+
T Consensus 122 -~------------------------------------------------------------------------------ 122 (406)
T 3sf4_A 122 -D------------------------------------------------------------------------------ 122 (406)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred hccCCCCchhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc----CCcc-cHHHHHHHHHHHH
Q 046930 613 EDSLPCMDVVDYSTIVAALCREGY--------------------VNKALDLCAFAKNK----GITV-NIVTYNTVIHSLC 667 (965)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 667 (965)
++....++..++..|...|+ +++|+..+++..+. +..+ ...++..++.+|.
T Consensus 123 ----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 198 (406)
T 3sf4_A 123 ----KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY 198 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 00013455666677777777 88888888776543 1111 2347888899999
Q ss_pred hcCcHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHH
Q 046930 668 RQGCFVEAFRLFDSLERIDM-VPS----EVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKP-STRIYNSFIDGYC 737 (965)
Q Consensus 668 ~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 737 (965)
..|++++|+..++++++... .++ ..++..+..+|...|++++|++.++++++. +..+ ...++..++.+|.
T Consensus 199 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 199 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 99999999999999876310 111 347888889999999999999999998763 1111 1567889999999
Q ss_pred hcCCHHHHHHHHHHhhhCC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCCh-HHHHHHHHHHh
Q 046930 738 KFGQLEEAFKFLHDLKINC----LEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPDF-LGFLYLVKGLC 807 (965)
Q Consensus 738 ~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~ 807 (965)
..|++++|...++++.+.. -.+. ..++..++.+|...|++++|++.++++++. +..+.. .++..++..+.
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQM 358 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 9999999999999887631 1111 457888999999999999999999998652 222322 33667777777
Q ss_pred cCCCHH
Q 046930 808 TKGRME 813 (965)
Q Consensus 808 ~~g~~~ 813 (965)
..|+..
T Consensus 359 ~~g~~~ 364 (406)
T 3sf4_A 359 VLGLSY 364 (406)
T ss_dssp HHHTTS
T ss_pred HhhHhH
Confidence 777654
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=3.8e-11 Score=134.91 Aligned_cols=433 Identities=10% Similarity=0.037 Sum_probs=253.4
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC---hhh
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK---PEL 102 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~ 102 (965)
...+-+..|.+.+..+ |.+...|..+++.+.+.+.++.+..+|+.++... |.....|...+..-.+.|. ++.
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f---P~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF---PLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhhCCcchHHH
Confidence 3456677788888877 5688999999999999999999999999999998 8899999999999999999 999
Q ss_pred HHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh--------hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCC-CC
Q 046930 103 AIGFFENAISLGALKPNVVSYTSLVIALCMLGRV--------NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGI-KP 173 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 173 (965)
+.++|++++...+.+|++..|...+....+.++. +...++|+.++.. -|. .+
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-------------------vG~~d~ 182 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-------------------CAIFEP 182 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH-------------------TTTTCS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-------------------hCcccc
Confidence 9999999998642248999998888766555553 3344677776642 233 33
Q ss_pred -CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCChHHHH
Q 046930 174 -DTVSYTILLDGFS---------KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK-------------KGKLEEAF 230 (965)
Q Consensus 174 -~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~ 230 (965)
+...|...+.... .+++++.+..+|.+++......-..+|......-.. ..+++.|.
T Consensus 183 ~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar 262 (679)
T 4e6h_A 183 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNAR 262 (679)
T ss_dssp SCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHH
Confidence 3567777775543 244578899999999863222112333222111100 01222233
Q ss_pred HHHHHHHHc--CC----CCC-------------------HhHHHHHHHHHHhcC-------CHhHHHHHHHHHHHCCCCC
Q 046930 231 TVFKKVEDL--GL----VAD-------------------EFVYATLIDGVCRRG-------DLDCAFRLLEDMEKKGIKP 278 (965)
Q Consensus 231 ~~~~~~~~~--~~----~~~-------------------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~g~~~ 278 (965)
..+.++... ++ +.. ...|...+..--..+ ..+.+..+|++++.
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~----- 337 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ----- 337 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH-----
Confidence 333332211 00 000 011111111110000 00111222333322
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 046930 279 SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGIL-ETKQRLEEAGIQMDIVMCNILIKALFM 357 (965)
Q Consensus 279 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (965)
..+.....|...+..+...|+.++|. +++++..... +.+...+..++....+
T Consensus 338 --------------------------~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~ 390 (679)
T 4e6h_A 338 --------------------------HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYEL 390 (679)
T ss_dssp --------------------------HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred --------------------------HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 23445555655555555556666664 6666665533 3344455555555566
Q ss_pred cCCHHHHHHHHHHchhCC---------Ccc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHH
Q 046930 358 VGALEDARALYQAMPEMN---------LVA------------NSVTYSTMIDGYCKLGRIEEALEIFDELRRM-SISSVA 415 (965)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 415 (965)
.|+++.|..+|+.+.+.. ..| ...+|...+....+.|..+.|..+|.++.+. .+....
T Consensus 391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ 470 (679)
T 4e6h_A 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD 470 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH
Confidence 666666666666655420 002 1235566666666666666677777666655 333344
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccc--cchhHHHHHHH
Q 046930 416 CYNCIINGLCKSG-MVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSE--IYDIICNDVIS 492 (965)
Q Consensus 416 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 492 (965)
.|...+..-.+.+ +.+.|..+|+..++. .+-+...+...+......|+.+.|..++++.....++ ....+|...+.
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444443333333 366666666666664 2333334445555555566666666666666665553 34467777777
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCC
Q 046930 493 FLCKRGSSEVASELYMFMRKRGS 515 (965)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~~~~~ 515 (965)
.-.+.|+.+.+.++.+++.+.-+
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 78888888888888888877654
No 62
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.56 E-value=5.2e-15 Score=164.89 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIE---DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
.-..+||+||.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467899999999999999999999988764 4799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCH-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCC------HHHHHHHHHHhhh
Q 046930 250 TLIDGVCRRGDL-DCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGD------VVTYSTLLHGYIE 322 (965)
Q Consensus 250 ~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~l~~~~~~ 322 (965)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-++...++..+..|. ..+...|...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999984 789999999999999999999999988777766555555554444322 3344445555555
Q ss_pred cC
Q 046930 323 ED 324 (965)
Q Consensus 323 ~~ 324 (965)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=7.7e-14 Score=152.09 Aligned_cols=241 Identities=15% Similarity=0.055 Sum_probs=186.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC-H
Q 046930 622 VDYSTIVAALCREGYVNKALDLCAFAKNK----GI-TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS-E 691 (965)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~ 691 (965)
.++..++..|...|++++|+..|+++.+. +. +....++..++.+|...|++++|+..++++++. +-.+. .
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 57888999999999999999999988764 11 224467888999999999999999999998763 11222 5
Q ss_pred hhHHHHHHHHHccCC-----------------hHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 046930 692 VSYATLIYNLCKEGQ-----------------LLDAKKLFDRMVLK----GFKP-STRIYNSFIDGYCKFGQLEEAFKFL 749 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 749 (965)
.++..+...|...|+ +++|++.+++.++. +..+ ...++..++.+|...|++++|+..+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 578888899999999 99999999987652 2112 2457889999999999999999999
Q ss_pred HHhhhCCCCC---C----hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-hHHHHHHHHHHhcCCCHHHHHH
Q 046930 750 HDLKINCLEP---D----KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD-FLGFLYLVKGLCTKGRMEEARS 817 (965)
Q Consensus 750 ~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~eA~~ 817 (965)
+++.+. .| + ..++..++.+|...|++++|++.|+++++. +..+. ...+..++.++...|++++|..
T Consensus 247 ~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (411)
T 4a1s_A 247 QERLRI--AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324 (411)
T ss_dssp HHHHHH--HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998763 22 1 237888999999999999999999998652 11111 3448889999999999999999
Q ss_pred HHHHHHhcCcchhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q 046930 818 ILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 870 (965)
+++++++..... +..+ ....+..++..+...|++++|++.+++....
T Consensus 325 ~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 325 YHNRHLAIAQEL------GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999998742211 0111 2335667777888999999999999986543
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=7.4e-14 Score=147.58 Aligned_cols=285 Identities=13% Similarity=0.053 Sum_probs=207.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC-H
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVN----IVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS-E 691 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~ 691 (965)
...+...+..+...|++++|+..|+++.+.... + ...+..++.+|...|++++|++.++++++. +..|. .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566788889999999999999999887433 3 357888999999999999999999987653 21222 5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHHhcCC--------------------HHHHH
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKG-FKPS----TRIYNSFIDGYCKFGQ--------------------LEEAF 746 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~--------------------~~~A~ 746 (965)
.++..+...+...|++++|++.++++++.. -.++ ..++..++.++...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 677888899999999999999999987631 0112 4478899999999999 99999
Q ss_pred HHHHHhhhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-hHHHHHHHHHHhcCCCHHHHH
Q 046930 747 KFLHDLKIN----CLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD-FLGFLYLVKGLCTKGRMEEAR 816 (965)
Q Consensus 747 ~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~eA~ 816 (965)
..++++... +..| ...++..++..+...|++++|++.++++++. +..+. ...+..++..+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887642 1122 2347888999999999999999999998652 11111 125788999999999999999
Q ss_pred HHHHHHHhcCcchhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhcc
Q 046930 817 SILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESL 895 (965)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (965)
..++++++..+.. +..+ ....+..++..+...|++++|+..+++.......
T Consensus 244 ~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---------------------- 295 (338)
T 3ro2_A 244 EYYKKTLLLARQL------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---------------------- 295 (338)
T ss_dssp HHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----------------------
Confidence 9999998742210 0111 1335666777888999999999999986321100
Q ss_pred ccccccccccccccCcccccccccccchhcccCCC-chhhhHHHHhhhccchHHHHHHHHHHHhccccc
Q 046930 896 NAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHD-FNFCYSKVASFCSKGELQKANKLMKEMLSSFKE 963 (965)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 963 (965)
.. . ++. ...+..++..|.+.|++++|...++++++..++
T Consensus 296 ---------------------------~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 ---------------------------LK-D-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp ---------------------------HT-C-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred ---------------------------cC-C-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 00 0 111 223344444499999999999999999998775
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=8.6e-14 Score=151.74 Aligned_cols=246 Identities=10% Similarity=0.015 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCCchHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN---VKYPFDNFV 86 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 86 (965)
.+..++..+ ...|++++|+..|+.++...+..+. ..++..++.+|...|++++|+..|+++++.. ...+....+
T Consensus 50 ~l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERL-CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH-HHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 455666666 7899999999999999987532221 2478899999999999999999999988751 001567788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCCCHhhHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGA----LKPNVVSYTSLVIALCMLGR-----------------VNEVNELFVR 145 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~ 145 (965)
+..++.+|...|++++|+..|++++.... .+....++..++.++...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999987510 12234578899999999999 9999999888
Q ss_pred HHHCCCccchhhhhhHHhhhhhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q 046930 146 MESEGLKFDVVFYSCWICGQMVDKGIK-PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR-PN----LITYTAIIFG 219 (965)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~ 219 (965)
..+... ..+.. ....++..+...+...|++++|...|+++++.... ++ ..++..+..+
T Consensus 209 al~~~~----------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 209 NLKLMR----------------DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHH----------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 765310 11111 12457888889999999999999999998764211 11 2367788899
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-----CCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 220 FCKKGKLEEAFTVFKKVEDLGLV-----ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+...|++++|...|+++.+.... ....++..+...+...|++++|..++++....
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988754211 11457778888899999999999999887653
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=1.5e-13 Score=151.11 Aligned_cols=215 Identities=14% Similarity=-0.008 Sum_probs=186.9
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHH
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNM-SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIG 105 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 105 (965)
++.|+..+....... +.+...+..++.++...|++ ++|+..|+++++.+ |.+..+|..++.+|...|++++|++
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456666777655433 45788899999999999999 99999999999998 8899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHhhHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH
Q 046930 106 FFENAISLGALKPNVVSYTSLVIALCML---------GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV 176 (965)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 176 (965)
.|+++++.. |+...+..++.++... |++++|+..|+++++.. +.+..
T Consensus 159 ~~~~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~ 214 (474)
T 4abn_A 159 CFSGALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---------------------VLDGR 214 (474)
T ss_dssp HHHHHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---------------------TTCHH
T ss_pred HHHHHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---------------------CCCHH
Confidence 999999865 6678999999999999 99999999999999864 24688
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 046930 177 SYTILLDGFSKE--------GTIEKAVGILNKMIEDRLR--PNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF 246 (965)
Q Consensus 177 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (965)
.|..+..+|... |++++|+..|+++++..+. .+...|..+..+|...|++++|+..|+++.+.. +.+..
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~ 293 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 899999999988 9999999999999987541 378899999999999999999999999999886 55677
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 247 VYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 247 ~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
.+..+..++...|++++|.+.+.++
T Consensus 294 a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888889999999999888766444
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=2.9e-13 Score=148.81 Aligned_cols=215 Identities=9% Similarity=-0.021 Sum_probs=191.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 046930 62 NMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKP-ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN 140 (965)
Q Consensus 62 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 140 (965)
++++++..++...... |.+..++..++.++...|++ ++|++.|+++++.+ |.+..+|..++.+|...|++++|+
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4667788888777666 78999999999999999999 99999999999987 677889999999999999999999
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHH
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKE---------GTIEKAVGILNKMIEDRLRPNLI 211 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~ 211 (965)
..|+++++. .|+..++..+..++... |++++|++.|+++++..+. +..
T Consensus 158 ~~~~~al~~----------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 214 (474)
T 4abn_A 158 TCFSGALTH----------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGR 214 (474)
T ss_dssp HHHHHHHTT----------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHhh----------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHH
Confidence 999999975 46778899999999999 9999999999999998654 788
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCC---CCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046930 212 TYTAIIFGFCKK--------GKLEEAFTVFKKVEDLGLV---ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSI 280 (965)
Q Consensus 212 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 280 (965)
.|..+..+|... |++++|+..|+++.+.. + .+...|..+..+|...|++++|...|++..+.... +.
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~ 292 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 999999999998 99999999999999875 3 58889999999999999999999999999987443 67
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHcCC
Q 046930 281 VTYNTIINGLCKVGRTSDAEEVSKGI 306 (965)
Q Consensus 281 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 306 (965)
..+..+..++...|++++|.+.+..+
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78888999999999999998877655
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=4e-13 Score=144.41 Aligned_cols=238 Identities=11% Similarity=0.030 Sum_probs=176.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHccCChHHHHHHHHHHHHC--CCC---C-ChhhH
Q 046930 661 TVIHSLCRQGCFVEAFRLFDSLERI----DMVP-SEVSYATLIYNLCKEGQLLDAKKLFDRMVLK--GFK---P-STRIY 729 (965)
Q Consensus 661 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~-~~~~~ 729 (965)
..+..+...|++++|+..|+++.+. +-.+ ...++..+..+|...|++++|++.++++++. ... + ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3677888999999999999999874 1112 2467888999999999999999999998863 111 1 24578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCChHH-H
Q 046930 730 NSFIDGYCKFGQLEEAFKFLHDLKINCL-EPD----KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPDFLG-F 799 (965)
Q Consensus 730 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~-~ 799 (965)
+.++.+|...|++++|+..++++++... .++ ..++..++.+|...|++++|++.|+++++. +..|.... +
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8999999999999999999999876310 111 247889999999999999999999998762 33255444 8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccccc-ccHHHHHHHhhhcCc---HHHHHHHHHHHhhccCCCc
Q 046930 800 LYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVES-ESVLNFLISLCEQGS---ILEAIAILDEIGYMLFPTQ 875 (965)
Q Consensus 800 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~ 875 (965)
..++.++...|++++|...++++++..... ..|.. ..+..++..+...|+ +++|+.++++..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~------- 333 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKA-------GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM------- 333 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-------
Confidence 889999999999999999999998742211 01211 123445666778888 777777776530
Q ss_pred ccchhhhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHH
Q 046930 876 RFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLM 954 (965)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~ 954 (965)
. .|+....+..++. |...|++++|...|
T Consensus 334 --------------------------------------------------~-~~~~~~~~~~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 334 --------------------------------------------------L-YADLEDFAIDVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp --------------------------------------------------C-HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------------------------C-HHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 1222333333344 99999999999999
Q ss_pred HHHhccccc
Q 046930 955 KEMLSSFKE 963 (965)
Q Consensus 955 ~~~~~~~~~ 963 (965)
+++++..++
T Consensus 363 ~~al~~~~~ 371 (383)
T 3ulq_A 363 LKVEQVRQL 371 (383)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHH
Confidence 999986543
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=2e-10 Score=129.13 Aligned_cols=466 Identities=8% Similarity=-0.004 Sum_probs=313.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC---hh
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR---VN 137 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~ 137 (965)
....+-+..|+..+..+ |.+...|..++..+.+.+.++.+..+|++++..- |.....|...+..-.+.++ ++
T Consensus 46 ~~~~d~i~~lE~~l~~n---p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ---PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp CCCSCHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHH
T ss_pred cCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHH
Confidence 44567788899999999 8999999999999999999999999999999874 7788899999998888898 99
Q ss_pred HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHC-CC-C
Q 046930 138 EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTI--------EKAVGILNKMIED-RL-R 207 (965)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~ 207 (965)
.+..+|++.+...+ .+|++..|...+....+.++. +...++|+.++.. |. .
T Consensus 121 ~v~~lfeRal~~~~-------------------~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d 181 (679)
T 4e6h_A 121 VIEPVLARCLSKEL-------------------GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFE 181 (679)
T ss_dssp HHHHHHHHHTCSSS-------------------CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhcC-------------------CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccc
Confidence 99999999987521 137788888777665554442 3455788887753 54 4
Q ss_pred C-CHHHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046930 208 P-NLITYTAIIFGFC---------KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 208 ~-~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 277 (965)
+ +...|...+.... .+++.+.+..+|+.++......-..+|......-...+. ..+.+++.+...
T Consensus 182 ~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~~---- 256 (679)
T 4e6h_A 182 PKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELSA---- 256 (679)
T ss_dssp SSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH----
T ss_pred ccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhhH----
Confidence 4 4567777765543 234578899999999864222222344332221111111 113333322111
Q ss_pred CCHHHHHHHHHHHHh----cCCcchH----HH--HHcCCCC-------CHHHHHHHHHHhhhcC-------ChhHHHHHH
Q 046930 278 PSIVTYNTIINGLCK----VGRTSDA----EE--VSKGILG-------DVVTYSTLLHGYIEED-------NVNGILETK 333 (965)
Q Consensus 278 ~~~~~~~~l~~~~~~----~g~~~~a----~~--~~~~~~~-------~~~~~~~l~~~~~~~~-------~~~~a~~~~ 333 (965)
+ |...-..+.. .+..+.. .. ....+|+ ....|...+..--..+ ..+.+..+|
T Consensus 257 -~---y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 257 -Q---YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp -H---HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred -H---HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 0 0000000100 0011000 00 0000110 1234444444333322 123456778
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 046930 334 QRLEEAGIQMDIVMCNILIKALFMVGALEDAR-ALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS-- 410 (965)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 410 (965)
++++... +.....|...+..+...|+.++|. .+|++.... ++.+...+...+......|+++.|..+|++++...
T Consensus 333 e~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 333 MQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 8888764 447888888888888899999997 999999874 35566678888999999999999999999998642
Q ss_pred ---------CC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHHc-CChhhH
Q 046930 411 ---------IS-----------SVACYNCIINGLCKSGMVDMATEVFIELNEK-GLSLYVGMHKIILQATFAK-GGVGGV 468 (965)
Q Consensus 411 ---------~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-g~~~~a 468 (965)
|. ...+|...+....+.|..+.|..+|.++++. + .+....+......-.+. ++.+.|
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHH
Confidence 32 2347888888888899999999999999886 2 22233333333222334 448999
Q ss_pred HHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--chhcHHHHHHHHHhcCcchhhhhhhHHHH
Q 046930 469 LNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVV--TDQSYYSILKGLDNEGKKWLIGPLLSMFV 546 (965)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 546 (965)
..++.+..+..+.. ...|...+......|+.+.|..+|+.++.....+ ....|...+.--...|..+.+..+...+.
T Consensus 490 r~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 490 CKVLELGLKYFATD-GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988876654 3577888888899999999999999998876532 23466667777777899999999999999
Q ss_pred HhcCCCchHHHHHHHHHH
Q 046930 547 KENGLVEPMISKFLVQYL 564 (965)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~ 564 (965)
+..|.. +.+..+...|.
T Consensus 569 ~~~P~~-~~~~~f~~ry~ 585 (679)
T 4e6h_A 569 EKFPEV-NKLEEFTNKYK 585 (679)
T ss_dssp HHSTTC-CHHHHHHHHTC
T ss_pred HhCCCC-cHHHHHHHHhc
Confidence 998865 45555555553
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=2.3e-13 Score=143.83 Aligned_cols=246 Identities=12% Similarity=0.002 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCCchHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN---VKYPFDNFV 86 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 86 (965)
.+...+..+ ...|++++|+..|++++...+..+. ...+..++..+...|++++|+..++++++.. ...+....+
T Consensus 7 ~l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERL-CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHH-HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 455566665 7899999999999999987532221 4678899999999999999999999877651 111455778
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCC--------------------hhHHHHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGR--------------------VNEVNEL 142 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 142 (965)
+..++..+...|++++|+..|+++++...-.++ ..++..++.++...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999865311222 3378889999999999 9999999
Q ss_pred HHHHHHCCCccchhhhhhHHhhhhhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHHHHHHH
Q 046930 143 FVRMESEGLKFDVVFYSCWICGQMVDKGIK-PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR-P----NLITYTAI 216 (965)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l 216 (965)
++++++... ..+.. ....++..+...+...|++++|...++++.+.... + ...++..+
T Consensus 166 ~~~a~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 229 (338)
T 3ro2_A 166 YEENLSLVT----------------ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229 (338)
T ss_dssp HHHHHHHHH----------------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 888765310 11111 12457888888999999999999999998764111 1 12367788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 217 IFGFCKKGKLEEAFTVFKKVEDLGLV-AD----EFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++....
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 88899999999999999988754211 11 456777888889999999999999887653
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=143.42 Aligned_cols=257 Identities=13% Similarity=0.063 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCC
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLK-------GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN------CLE 758 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~ 758 (965)
.++..+...+...|++++|+.+++++++. ..+....++..++.+|...|++++|+..+++++.. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44455555555555555555555555541 11223455666677777777777777777666543 112
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhC------CCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchh
Q 046930 759 P-DKFTVSAVINGFCQKGDMEGALGFFLDFNTK------GVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLE 830 (965)
Q Consensus 759 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 830 (965)
| ...++..++..|...|++++|++.++++++. +-.|.... +..++..+...|++++|..+++++++.....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~- 186 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK- 186 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-
Confidence 3 2456777788888888888888888887653 22344433 8889999999999999999999998741100
Q ss_pred hhhccccccc-cccHHHHHHHhhhcCcHHHHHHHHHHHhhccCC----Ccccchhhhhhhhhhhhhhhcccccccccccc
Q 046930 831 LINRVDIEVE-SESVLNFLISLCEQGSILEAIAILDEIGYMLFP----TQRFGTDRAIETQNKLDECESLNAVASVASLS 905 (965)
Q Consensus 831 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (965)
..+..|. ...+..++..+...|++++|++.++++...... ............. .........
T Consensus 187 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 253 (311)
T 3nf1_A 187 ---LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA----------EEREECKGK 253 (311)
T ss_dssp ---SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------HHHHHC---
T ss_pred ---hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------HHHHHhcCc
Confidence 0001232 335667777889999999999999987643110 0000000000000 001112223
Q ss_pred ccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhcccccC
Q 046930 906 NQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 906 ~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
....+...+++..+.+.+... |+....+..++. |.+.|++++|++.|+++++..|++
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 311 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQG 311 (311)
T ss_dssp ----CCSCCCC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--
T ss_pred hhhHHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcC
Confidence 445566667777777777665 555554544444 999999999999999999998863
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=4.3e-12 Score=136.34 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGI------TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS 690 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~ 690 (965)
..++..++..|...|++++|+..++++.+... +....+++.++.+|...|++++|+..|+++++. +-.+.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 56678888888899999999999888776411 112357888999999999999999999998763 11111
Q ss_pred -HhhHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCC-
Q 046930 691 -EVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GF-KPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINC---LEPD- 760 (965)
Q Consensus 691 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~- 760 (965)
..++..+..+|...|++++|++.|+++++. +. +....++..++.+|...|++++|...++++.+.. -.|.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 347888999999999999999999998872 23 3346778999999999999999999999987631 0222
Q ss_pred hhHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 761 KFTVSAVINGFCQKGD---MEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 761 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
...+..+...+...|+ +++|+.++++. +..|+... +..++..|...|++++|..+++++++.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2345778888888998 88888888875 44555443 778999999999999999999999874
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=8.6e-12 Score=128.97 Aligned_cols=212 Identities=16% Similarity=0.069 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh-------cCCh-------hhHHHHHHHHHH-cCCCCCCHhhHHHHHH
Q 046930 64 SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK-------IGKP-------ELAIGFFENAIS-LGALKPNVVSYTSLVI 128 (965)
Q Consensus 64 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~l~~ 128 (965)
++|+.+|++++..+ |.++.+|..++..+.. .|++ ++|+..|++++. .. |.+...|..++.
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 68999999999998 8999999999998874 5886 999999999998 45 567779999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV-SYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (965)
.+.+.|++++|..+|+++++..+ .+.. +|..++..+.+.|++++|..+|+++++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIED---------------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSS---------------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred HHHhcCCHHHHHHHHHHHHhccc---------------------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997531 2343 8999999999999999999999999987543
Q ss_pred CCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCC--CHHHH
Q 046930 208 PNLITYTAIIFGFC-KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKG-IKP--SIVTY 283 (965)
Q Consensus 208 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~--~~~~~ 283 (965)
+...|...+.... ..|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++.+... .+| ....|
T Consensus 167 -~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 167 -RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp -CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred -CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4555554443322 3699999999999998875 5578889999999999999999999999999863 343 35567
Q ss_pred HHHHHHHHhcCCcchHHHHH
Q 046930 284 NTIINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 284 ~~l~~~~~~~g~~~~a~~~~ 303 (965)
..++....+.|+.+.|..++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 77776666666666665544
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=7.5e-13 Score=150.85 Aligned_cols=170 Identities=12% Similarity=0.054 Sum_probs=153.9
Q ss_pred ccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch
Q 046930 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN 84 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (965)
..|.+..+|+.|+..+ .+.|++++|+..|+++++.. +.+..++..++.+|.+.|++++|+..|+++++.+ |.+.
T Consensus 4 s~P~~a~al~nLG~~~-~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIK-REQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFA 77 (723)
T ss_dssp --CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred CCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH
Confidence 3588888999999988 89999999999999999876 5678889999999999999999999999999998 8899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.+|..++.+|...|++++|++.|+++++.+ |.+..+|..++.+|...|++++|+..|+++++..+
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P------------- 142 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP------------- 142 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------
Confidence 999999999999999999999999999987 77888999999999999999999999999998642
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
.+..+|..++.++...|++++|.+.++++++
T Consensus 143 --------~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 --------DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp --------CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred --------CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 4578899999999999999999999988875
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=142.75 Aligned_cols=256 Identities=13% Similarity=0.063 Sum_probs=181.2
Q ss_pred cccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhC------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 046930 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNH------GTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 4 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (965)
.+.|.....+..++..+ ...|++++|+..|++++... ..+....++..++.++...|++++|+..|+++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQY-ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TTSCHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34566677899999987 89999999999999988731 123346678899999999999999999999998752
Q ss_pred -----CCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 78 -----VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL------GALKPNVVSYTSLVIALCMLGRVNEVNELFVRM 146 (965)
Q Consensus 78 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 146 (965)
...|....++..++.+|...|++++|+..|+++++. +..+....++..++.++...|++++|+..|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112667889999999999999999999999999875 211233457889999999999999999999999
Q ss_pred HHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------HHH
Q 046930 147 ESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR-------LRPN-------LIT 212 (965)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~-------~~~ 212 (965)
++.... ......+....++..++.++...|++++|...|+++++.. ..+. ...
T Consensus 180 ~~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 180 LEIYQT-------------KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp HHHHHH-------------TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred HHHHHH-------------HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 863000 0000011235678889999999999999999999998631 1111 112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+..+...+...+.+.++...+....... +.+..++..+..+|.+.|++++|..+|++..+.
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2223334445566677777777766543 445667888899999999999999999988763
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=1.5e-12 Score=148.44 Aligned_cols=167 Identities=15% Similarity=0.084 Sum_probs=125.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.++.++..++.+|.+.|++++|++.|+++++.+ |.+..+++.++.+|.+.|++++|++.|+++++.+ |.+..+|.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~ 81 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 345677777777888888888888888887777 6777778888888888888888888888887766 56677777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.++.++...|++++|++.|+++++..+ .+..+|+.++.+|.+.|++++|++.|+++++.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P---------------------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINP---------------------AFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888888887776532 34677777777777778888888887777776
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
.+. +...+..++.++...|++++|.+.++++.+
T Consensus 141 ~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 141 KPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 544 567777777777777777777777776654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=5.2e-12 Score=124.35 Aligned_cols=209 Identities=11% Similarity=0.013 Sum_probs=166.6
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.++..|+..+..+ ...|++++|+..|..++...+ +++...+..++.++...|++++|+..|+++++.+ |.+..+
T Consensus 4 ~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~ 78 (228)
T 4i17_A 4 TTDPNQLKNEGNDA-LNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANA 78 (228)
T ss_dssp CCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHH
T ss_pred ccCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHH
Confidence 44557888888887 899999999999999998763 2677788889999999999999999999999998 889999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH-------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNV-------VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYS 159 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (965)
+..++.+|...|++++|+..|+++++.. |.+. ..|..++.++...|++++|+..|+++++..+
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------- 148 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-------- 148 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC--------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC--------
Confidence 9999999999999999999999999976 5666 5688999999999999999999999987531
Q ss_pred hHHhhhhhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 160 CWICGQMVDKGIKP--DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 160 ~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
. +..+|..+..+|...| ...++++...+.. +...|.... ....+.+++|+..|++..
T Consensus 149 -------------~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 149 -------------KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred -------------CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 2 3567888888876544 4445565554322 444454433 334567899999999999
Q ss_pred HcCCCCCHhHHHHHH
Q 046930 238 DLGLVADEFVYATLI 252 (965)
Q Consensus 238 ~~~~~~~~~~~~~l~ 252 (965)
+.. +.+..+...+.
T Consensus 208 ~l~-p~~~~~~~~l~ 221 (228)
T 4i17_A 208 TLS-PNRTEIKQMQD 221 (228)
T ss_dssp HHC-TTCHHHHHHHH
T ss_pred hcC-CCCHHHHHHHH
Confidence 886 44555554443
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=5.9e-11 Score=127.01 Aligned_cols=202 Identities=11% Similarity=0.050 Sum_probs=155.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----Ccc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCC-
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKG-----ITV-NIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVP- 689 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~- 689 (965)
..++..++..|...|++++|+..++++.+.. ..+ ...+++.++.+|...|++++|++.|+++++. +..+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5567788888899999999999988877531 111 2457888999999999999999999988763 2111
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CCC-h
Q 046930 690 SEVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCL---EPD-K 761 (965)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~ 761 (965)
...++..+..+|...|++++|++.|++.++. +.+....++..++.++.+.|++++|...+++..+... .|. .
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1456788899999999999999999998871 2233467889999999999999999999999887421 222 2
Q ss_pred hHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 762 FTVSAVINGFCQKGD---MEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 762 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
..+..+...+...|+ +++|+..+++. +..|+... +..++..|...|++++|...|+++++.
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356667777778888 88888888873 34455444 778999999999999999999999873
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=1.7e-11 Score=120.66 Aligned_cols=194 Identities=10% Similarity=-0.052 Sum_probs=155.0
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHH
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYAT 696 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 696 (965)
+.|+..+..++..+...|++++|+..|+++++...+++...+..++.++...|++++|+..|+++++.+ |+ ...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHH
Confidence 456788999999999999999999999999988654677888889999999999999999999999854 54 678889
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---hhHHHH
Q 046930 697 LIYNLCKEGQLLDAKKLFDRMVLKGFKPST-------RIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD---KFTVSA 766 (965)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ 766 (965)
+..+|...|++++|++.|+++++.. +.+. ..|..++.++...|++++|+..|+++++. .|+ ..+|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 9999999999999999999999852 3344 56888999999999999999999999984 776 357888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 767 VINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 767 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
++.+|...| ...++++...+ ..+...+.. ......|.+++|+..|+++++
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 888886544 44556654432 122222332 234456789999999999998
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=2.9e-11 Score=114.51 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+..++..+...|++++|+..|+.+++.+ |.+..++..++.++...|++++|+..|+++++.. |.+...+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 84 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 34445555555566666666665555554 4455555555666666666666666666655543 444555555555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
++...|++++|...++++.+.. +.+...+..++..+...|++++|...|+++.+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 142 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN---------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN- 142 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhcCHHHHHHHHHHHHhcC---------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-
Confidence 5555566666665555555432 133445555555555555555555555555554322
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
+..++..++.++...|++++|...++++.+
T Consensus 143 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=1.7e-11 Score=116.18 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=149.6
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
....|..++..+ ...|++++|+..|+.++... +.+..++..++.++...|++++|...++.+++.+ |.+..++.
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 80 (186)
T 3as5_A 7 RQVYYRDKGISH-AKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHH-HHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hhHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHH
Confidence 445677777776 78999999999999987654 4578889999999999999999999999999987 78899999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++..+...|++++|++.|++++... +.+...+..++.++...|++++|...++++.+..
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------ 140 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------------------ 140 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------------------
Confidence 99999999999999999999999876 6788899999999999999999999999998753
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
+.+..++..++..+...|++++|...++++.+..
T Consensus 141 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 141 ---PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2467889999999999999999999999998753
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=2.9e-11 Score=129.50 Aligned_cols=230 Identities=9% Similarity=-0.085 Sum_probs=178.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC----c-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-----CCC-CHh
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNKGI----T-VNIVTYNTVIHSLCRQGCFVEAFRLFDSLERID-----MVP-SEV 692 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~ 692 (965)
+...+..+...|++++|+..|+++.+... + ....++..++.+|...|++++|+..+.++++.. ..+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 45567778899999999999999886521 1 124578889999999999999999999987631 111 155
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCC-Ch
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKI-----NCLEP-DK 761 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p-~~ 761 (965)
+++.+..+|...|++++|++.|+++++. +.++ ...++..++.+|...|++++|+..++++.+ . .| ..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHH
Confidence 7888999999999999999999998863 2111 245788999999999999999999999887 3 33 35
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC---CCChH-HHHHHHHHHhcCCC---HHHHHHHHHHHHhcCcchhhhhc
Q 046930 762 FTVSAVINGFCQKGDMEGALGFFLDFNTKGV---SPDFL-GFLYLVKGLCTKGR---MEEARSILREMLQSKSVLELINR 834 (965)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~-~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~~~~~~~ 834 (965)
.++..++.+|...|++++|++.+++.++... .|... .+..+...+...|+ +++|+..+++...
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~---------- 331 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---------- 331 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC----------
Confidence 6888999999999999999999999876321 23333 36667777778888 8888888876321
Q ss_pred ccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHh
Q 046930 835 VDIEV-ESESVLNFLISLCEQGSILEAIAILDEIG 868 (965)
Q Consensus 835 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 868 (965)
.| ....+..++..+...|++++|...|++..
T Consensus 332 ---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 332 ---HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22 23345667778899999999999999864
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=1.4e-11 Score=124.12 Aligned_cols=180 Identities=8% Similarity=-0.085 Sum_probs=148.6
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
|.+...++.++..+ ...|++++|+..|+.++...+..+. ..++..++.++.+.|++++|+..|+++++..+..|..+.
T Consensus 12 ~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEF-YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHH-HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 56677888888887 7999999999999999987643222 678899999999999999999999999998755467788
Q ss_pred HHHHHHHHHHh--------cCChhhHHHHHHHHHHcCCCCCCHhhH-----------------HHHHHHHHhcCChhHHH
Q 046930 86 VCSSVVSGFCK--------IGKPELAIGFFENAISLGALKPNVVSY-----------------TSLVIALCMLGRVNEVN 140 (965)
Q Consensus 86 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~ 140 (965)
++..++.++.. .|++++|+..|++++... |.+.... ..++.+|...|++++|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999 999999999999999876 4444444 67789999999999999
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCC
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKE----------GTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 207 (965)
..|+++++..+.. ......+..++.+|... |++++|...|+++++..+.
T Consensus 169 ~~~~~~l~~~p~~------------------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 169 VTYEAVFDAYPDT------------------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHCTTS------------------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCC------------------chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 9999998864311 11356777888888766 8889999999999886433
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=6e-10 Score=119.13 Aligned_cols=208 Identities=14% Similarity=-0.001 Sum_probs=147.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch----HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH----
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN----FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV---- 120 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 120 (965)
.....+..+...|++++|...+++++...+ +.+. .++..++..+...|++++|+..+++++....-.++.
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344556667788999999999999888763 2222 267788889999999999999999988643112232
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046930 121 VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIK--P-DTVSYTILLDGFSKEGTIEKAVGI 197 (965)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~ 197 (965)
.++..++.++...|++++|...++++++... ..+.. | ...++..+...+...|++++|...
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLIN----------------EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------------HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2356788889999999999999999876311 11211 2 245667788889999999999999
Q ss_pred HHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHH----HHHHHHHhcCCHhHHHHH
Q 046930 198 LNKMIEDRLRP----NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD--EFVYA----TLIDGVCRRGDLDCAFRL 267 (965)
Q Consensus 198 ~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~~~A~~~ 267 (965)
+++.+...... ...++..+..++...|++++|...+++.......++ ..... ..+..+...|++++|...
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99998753221 245677788889999999999999998875421211 11111 233446688999999988
Q ss_pred HHHHHHC
Q 046930 268 LEDMEKK 274 (965)
Q Consensus 268 ~~~~~~~ 274 (965)
+++....
T Consensus 238 ~~~a~~~ 244 (373)
T 1hz4_A 238 LRHTAKP 244 (373)
T ss_dssp HHHSCCC
T ss_pred HHhCCCC
Confidence 8887653
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=2.1e-10 Score=122.65 Aligned_cols=269 Identities=14% Similarity=0.066 Sum_probs=187.7
Q ss_pred HHHhcCCHHHHHHHHHhhhccCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cc----HHHHHHHHHH
Q 046930 595 KLLKAGSVLDVYKLVMGAEDSLPCMDVV----DYSTIVAALCREGYVNKALDLCAFAKNKGIT-VN----IVTYNTVIHS 665 (965)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~ 665 (965)
.+...|+.++|...+.......|..+.. +++.++..+...|++++|...+++....... .+ ..++..++..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4445555555555555554444444332 5677888899999999999999988764111 11 2346778889
Q ss_pred HHhcCcHHHHHHHHHHHHhC----CCC--CC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCC--CC--ChhhHHHHHH
Q 046930 666 LCRQGCFVEAFRLFDSLERI----DMV--PS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGF--KP--STRIYNSFID 734 (965)
Q Consensus 666 ~~~~~~~~~A~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~--~~~~~~~l~~ 734 (965)
+...|++++|+..++++++. +.. |. ...+..+..++...|++++|...+++.+...- .+ ...++..++.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999998763 221 22 45667788889999999999999999886411 11 2356788999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHH-----HHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---hHHHHHHHHH
Q 046930 735 GYCKFGQLEEAFKFLHDLKINCLEPD-KFTVS-----AVINGFCQKGDMEGALGFFLDFNTKGVSPD---FLGFLYLVKG 805 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 805 (965)
++...|++++|...+++.....-.++ ...+. ..+..+...|++++|.+.+++..+....+. ...+..++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 99999999999999999875311222 11222 233447799999999999999854321111 1236678899
Q ss_pred HhcCCCHHHHHHHHHHHHhcCcchhhhhcccccccc-ccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 806 LCTKGRMEEARSILREMLQSKSVLELINRVDIEVES-ESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 806 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
+...|++++|...+++++..... .+..+.. .....++..+...|+.++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARS------LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHh------CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999874221 1111122 2455566678899999999999998654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=3.1e-11 Score=123.52 Aligned_cols=206 Identities=11% Similarity=-0.019 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHccCChHHH
Q 046930 636 YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS-EVSYATLIYNLCKEGQLLDA 710 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 710 (965)
++++|...|+++ +..|...|++++|++.|.++++. +-.++ ..+++.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478888887765 44577889999999999888763 31222 56788899999999999999
Q ss_pred HHHHHHHHHC----CCCC-ChhhHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCC-------hhHHHHHHHHHHhcCCH
Q 046930 711 KKLFDRMVLK----GFKP-STRIYNSFIDGYCKF-GQLEEAFKFLHDLKINCLEPD-------KFTVSAVINGFCQKGDM 777 (965)
Q Consensus 711 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~ 777 (965)
+..|++.++. |-.. -..+++.++.+|... |++++|+..|+++++. .|+ ..++..++..+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999988763 2111 145788999999996 9999999999998873 331 35688999999999999
Q ss_pred HHHHHHHHHhHhCCCCCCh------HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccccc---ccHHHHH
Q 046930 778 EGALGFFLDFNTKGVSPDF------LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVES---ESVLNFL 848 (965)
Q Consensus 778 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ 848 (965)
++|++.|+++++....... ..+..++.++...|++++|...|+++++..+. .++. ..+..++
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---------~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN---------FADSRESNFLKSLI 245 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CCCcHHHHHHHHHH
Confidence 9999999999874322211 14677899999999999999999999984321 1111 1234455
Q ss_pred HHhh--hcCcHHHHHHHHHHH
Q 046930 849 ISLC--EQGSILEAIAILDEI 867 (965)
Q Consensus 849 ~~~~--~~g~~~~A~~~~~~~ 867 (965)
..+. ..+++++|+..|+++
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHHHhccC
Confidence 5543 467899999998765
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=2.7e-11 Score=123.98 Aligned_cols=206 Identities=15% Similarity=0.077 Sum_probs=151.8
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNK------GI-TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----- 685 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 685 (965)
+....++..++..|...|++++|+..|+++.+. +. +....++..++.+|...|++++|++.|.++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 445778899999999999999999999998865 22 234568899999999999999999999998874
Q ss_pred -CCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 046930 686 -DMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLK------GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKIN- 755 (965)
Q Consensus 686 -~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 755 (965)
...|+ ..++..+...|...|++++|+++++++++. +..| ...++..++.+|...|++++|+..++++.+.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11233 667888999999999999999999999874 1123 3567889999999999999999999998763
Q ss_pred ------CCCCC-hhHHHHHHHHHHhcCCH------HHHHHHHHHhHhCCCCCChH-HHHHHHHHHhcCCCHHHHHHHHHH
Q 046930 756 ------CLEPD-KFTVSAVINGFCQKGDM------EGALGFFLDFNTKGVSPDFL-GFLYLVKGLCTKGRMEEARSILRE 821 (965)
Q Consensus 756 ------~~~p~-~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~ 821 (965)
...+. ...|..+...+...+.. ..+...++.. ....|+.. .+..++.++...|++++|..+|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC--KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC--CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333 33455555554443333 3333333332 12334443 388899999999999999999999
Q ss_pred HHhc
Q 046930 822 MLQS 825 (965)
Q Consensus 822 ~~~~ 825 (965)
+++.
T Consensus 278 al~~ 281 (283)
T 3edt_B 278 ASRN 281 (283)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9873
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=6.1e-11 Score=114.17 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=27.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
++.+|.+.|++++|+..|+++++.+ |.++.++..++.++...|++++|+..|+++++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555555554443 33444444444445555555555555554444
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.32 E-value=1.6e-09 Score=108.81 Aligned_cols=237 Identities=10% Similarity=-0.008 Sum_probs=195.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH----H
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG--NMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF----C 95 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 95 (965)
......++|+..+..++... |....+++.-..++...| ++++++..++.++..+ |.+..+|+....++ .
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHH
Confidence 34444468999999999876 456677888888898888 9999999999999999 88999999999988 6
Q ss_pred hc---CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh--HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 96 KI---GKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN--EVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 96 ~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
.. +++++++.+++++++.+ |.+..+|+....++.+.|.++ ++++.++++++.++
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~------------------- 177 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL------------------- 177 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-------------------
T ss_pred hccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-------------------
Confidence 66 78999999999999987 889999999999999999998 99999999998753
Q ss_pred CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC--C
Q 046930 171 IKPDTVSYTILLDGFSKEGT------IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEE-AFTVFKKVEDLG--L 241 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~ 241 (965)
.|..+|+....+....++ ++++++.+++++...+. |..+|+-+...+.+.|+... +..+..++.+.+ .
T Consensus 178 --~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 178 --KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp --TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred --CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 678889888877777776 99999999999998766 89999999888888887544 555666665432 1
Q ss_pred CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 242 VADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII 287 (965)
Q Consensus 242 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 287 (965)
+.+...+..+...|.+.|+.++|.++++.+.+.--+.....|+..+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3467788889999999999999999999998631122444555443
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=4.4e-11 Score=115.16 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCChhHHHHHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCS----------------LVYSFCSQGNMSRAVEVLELMS 74 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 74 (965)
..+...+..+ ...|++++|+..|+.++... |.++..+.. ++.++.+.|++++|+..|++++
T Consensus 5 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAA-IEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455556665 78999999999999999876 345666777 9999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCc
Q 046930 75 DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR--VNEVNELFVRMESEGLK 152 (965)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~ 152 (965)
+.+ |.++.++..++.++...|++++|+..|+++++.+ |.++.++..++.+|...|+ ...+...+.++...
T Consensus 82 ~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (208)
T 3urz_A 82 QKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--- 153 (208)
T ss_dssp HHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC---
T ss_pred HHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC---
Confidence 999 8899999999999999999999999999999987 7788899999998876654 44556666665421
Q ss_pred cchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 153 FDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217 (965)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 217 (965)
.|....+..+..++...|++++|...|+++++. .|+......+.
T Consensus 154 -------------------~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 154 -------------------TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred -------------------CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 233334555666777789999999999999875 55655444443
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=1.7e-11 Score=125.50 Aligned_cols=239 Identities=13% Similarity=0.048 Sum_probs=168.6
Q ss_pred HccCCchHHHHHHHHHHHhC------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCCchHHHHHH
Q 046930 22 IKRNDPEKALLVLKDCLRNH------GTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDEN-----VKYPFDNFVCSSV 90 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l 90 (965)
...|+++.|+..|++++... ..+....++..++.++...|++++|+..|+.+++.. ...|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 46788999999998888732 112346678899999999999999999999998762 2226778899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 91 VSGFCKIGKPELAIGFFENAISL------GALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
+.+|...|++++|+..|++++.. ...+....++..++.++...|++++|+..|+++++...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------- 158 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA------------- 158 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------
Confidence 99999999999999999999875 10133456888999999999999999999999986400
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChHH------HH
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED-------RLRPN-LITYTAIIFGFCKKGKLEE------AF 230 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~------A~ 230 (965)
.......+....++..+..++...|++++|...|+++++. ...+. ...+..+.......+.... +.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 0000001123667889999999999999999999999864 11222 2233333333333333222 22
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 231 TVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
..++.... ..+....++..+...|...|++++|..+|++.++.
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 239 SWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ----CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22222111 11233557888899999999999999999998753
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=8.5e-12 Score=112.58 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=122.0
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
|+..+ ..+|+++.|+..|..++... +..+..+..++.+|.+.|++++|++.|+++++.+ |.++.+|..++.+|.
T Consensus 3 LG~~~-~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 3 LGSMR-RSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYE 76 (150)
T ss_dssp ----C-CCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred hHHHH-HHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 34444 67899999999999977532 3345667889999999999999999999999999 899999999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHH-HHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNEL-FVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
..|++++|+..|+++++.+ |.++.++..++.+|.+.|++++|.+. ++++++..| .+
T Consensus 77 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P---------------------~~ 133 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP---------------------GS 133 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST---------------------TC
T ss_pred HcCchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc---------------------CC
Confidence 9999999999999999987 77888999999999999999887765 588887642 45
Q ss_pred HHHHHHHHHHHHhcCC
Q 046930 175 TVSYTILLDGFSKEGT 190 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~ 190 (965)
+.+|......+...|+
T Consensus 134 ~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 7778877777777664
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=1.2e-10 Score=117.26 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=92.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC-Hhh
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN-VVS 122 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 122 (965)
+.++..+..++..+.+.|++++|+..|+.+++..+..+....++..++.+|.+.|++++|+..|+++++..+-.+. ..+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4567888899999999999999999999999998432333899999999999999999999999999997522223 457
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHHCCC
Q 046930 123 YTSLVIALCM--------LGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 123 ~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~ 151 (965)
+..++.++.. .|++++|+..|+++++..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 8889999999 9999999999999998643
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.29 E-value=2.7e-11 Score=139.50 Aligned_cols=170 Identities=13% Similarity=0.035 Sum_probs=94.7
Q ss_pred ccCCchHHHHHHHHHH--------HhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 046930 23 KRNDPEKALLVLKDCL--------RNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF 94 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (965)
..|++++|+..|+.++ ... +.+...+..++.++...|++++|+..|+++++.+ |.+..+|+.++.++
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence 4566666666666655 322 3344555555566666666666666666666655 55556666666666
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 95 CKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
...|++++|+..|+++++.+ |.+...+..++.++.+.|++++ +..|+++++.++ .+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P---------------------~~ 533 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND---------------------GV 533 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT---------------------TC
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC---------------------ch
Confidence 66666666666666666554 4455555566666666666666 666666555421 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK 222 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (965)
..+|..+..++.+.|++++|++.|+++++.++. +..++..+..++..
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHc
Confidence 455555666666666666666666655544322 34444444444443
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.29 E-value=1.1e-11 Score=111.97 Aligned_cols=146 Identities=8% Similarity=-0.020 Sum_probs=119.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
|+.++...|++++|+..++.+...+ |.++..+..++.+|...|++++|++.|+++++.+ |.++.+|..++.++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 4556677889999999999988877 7788888999999999999999999999999987 7788899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHH
Q 046930 133 LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGI-LNKMIEDRLRPNLI 211 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~ 211 (965)
.|++++|+..|+++++.++ .++.+|..+..+|.+.|++++|.+. ++++++..+. ++.
T Consensus 78 ~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~ 135 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNP---------------------TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPA 135 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHH
T ss_pred cCchHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHH
Confidence 9999999999999988642 4578888899999999998776655 5888887554 777
Q ss_pred HHHHHHHHHHhcCC
Q 046930 212 TYTAIIFGFCKKGK 225 (965)
Q Consensus 212 ~~~~l~~~~~~~g~ 225 (965)
+|......+...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 88877777777664
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=1.6e-10 Score=118.18 Aligned_cols=200 Identities=13% Similarity=-0.043 Sum_probs=151.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC---CCC--Hh
Q 046930 623 DYSTIVAALCREGYVNKALDLCAFAKNK----GITVN-IVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM---VPS--EV 692 (965)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~ 692 (965)
.|...+..|...|++++|+..|.++.+. |.++. ..+|+.++.+|...|++++|+..|+++++... .+. ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445567788999999999999988764 22222 46899999999999999999999999887321 111 45
Q ss_pred hHHHHHHHHHcc-CChHHHHHHHHHHHHCC--C-CC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh-----
Q 046930 693 SYATLIYNLCKE-GQLLDAKKLFDRMVLKG--F-KP-S-TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK----- 761 (965)
Q Consensus 693 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~--~-~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----- 761 (965)
++..+..+|... |++++|++.|+++++.. . .+ . ..++..++.++...|++++|+..|+++.+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788899999996 99999999999998741 0 01 1 356889999999999999999999999985322211
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH------HHHHHHHHh--cCCCHHHHHHHHHHHHh
Q 046930 762 -FTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG------FLYLVKGLC--TKGRMEEARSILREMLQ 824 (965)
Q Consensus 762 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~------~~~l~~~~~--~~g~~~eA~~~~~~~~~ 824 (965)
.+|..++.++...|++++|+..|++.++ +.|+... +..++..+. ..+++++|+..|++++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 1577888899999999999999999954 6665432 344566664 56889999999988866
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=2.9e-10 Score=111.16 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=81.9
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
+...++.++..+ ...|++++|+..|+.++...+..+. ..++..++.++.+.|++++|+..|+++++.++..+..+.++
T Consensus 3 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQK-LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 345677777776 7889999999999999887654332 45788889999999999999999999999885333334578
Q ss_pred HHHHHHHHh------------------cCChhhHHHHHHHHHHcC
Q 046930 88 SSVVSGFCK------------------IGKPELAIGFFENAISLG 114 (965)
Q Consensus 88 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~ 114 (965)
..++.++.. .|++++|+..|+++++..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 888888775 568888888888888765
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=7e-10 Score=108.39 Aligned_cols=191 Identities=9% Similarity=0.008 Sum_probs=131.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH-hhHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV-VSYT 124 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ 124 (965)
++..+..++..+...|++++|+..|+.+++..+..+....++..++.+|.+.|++++|+..|+++++..+-.+.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 455677788889999999999999999999875434456799999999999999999999999999876222222 2666
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHH
Q 046930 125 SLVIALCM------------------LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFS 186 (965)
Q Consensus 125 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 186 (965)
.++.++.. .|++++|+..|+++++..|. +..++..+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~---------------------~~~a~~a~~~l-- 139 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN---------------------SQYTTDATKRL-- 139 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT---------------------CTTHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC---------------------ChhHHHHHHHH--
Confidence 77777665 57899999999999986431 12222111110
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHhHH
Q 046930 187 KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD--EFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 264 (965)
..+...+ ......+...+.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|
T Consensus 140 --------~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 --------VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp --------HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0000011 01123455667777888888888888777642211 24566677777788888888
Q ss_pred HHHHHHHHHCC
Q 046930 265 FRLLEDMEKKG 275 (965)
Q Consensus 265 ~~~~~~~~~~g 275 (965)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 88887777653
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=1.5e-10 Score=108.01 Aligned_cols=169 Identities=14% Similarity=0.076 Sum_probs=135.8
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.....+..++..+ ...|++++|+..|++++... |.+...+..++.++...|++++|+..|+.++..+ | ++..
T Consensus 3 ~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p-~~~~ 75 (176)
T 2r5s_A 3 ASPDEQLLKQVSEL-LQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---Q-DNSY 75 (176)
T ss_dssp ---CTTHHHHHHHH-HHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---C-CHHH
T ss_pred CCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---C-ChHH
Confidence 34445677777776 79999999999999988866 5678889999999999999999999999998887 6 6655
Q ss_pred HHHHHHHH-HhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 87 CSSVVSGF-CKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 87 ~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+...+... ...+...+|+..|+++++.+ |.+...+..++.++...|++++|+..|+++++..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------- 140 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLG------------- 140 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-------------
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-------------
Confidence 55444332 23345567899999999876 677889999999999999999999999999886431
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..+...+..++.++...|+.++|...|++.+.
T Consensus 141 ------~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 141 ------AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ------TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ------cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 12356788899999999999999999988764
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=9.8e-11 Score=134.85 Aligned_cols=174 Identities=7% Similarity=-0.072 Sum_probs=121.3
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 58 CSQGNMSRAVEVLELMS--------DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
...|++++|++.|++++ +.+ |.+..++..++.++...|++++|++.|+++++.+ |.+..+|..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHH
Confidence 56677777777777777 555 6677777777777777777777877777777765 5667777777777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
+...|++++|+..|+++++..+ .+...|..+..++.+.|++++ ++.|+++++.++. +
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P---------------------~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~ 533 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFP---------------------GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-V 533 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST---------------------TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-C
T ss_pred HHHcCCHHHHHHHHHHHHHhCC---------------------CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-h
Confidence 7777777777777777776532 346667777777777777777 7777777776544 6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 046930 210 LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD 260 (965)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 260 (965)
..+|..+..++.+.|++++|+..|+++.+.+ +.+...+..+..++...++
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 6677777777777777777777777777654 3345566666666544443
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.20 E-value=1.7e-10 Score=107.81 Aligned_cols=164 Identities=12% Similarity=0.023 Sum_probs=124.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
.....++..+...|++++|+..|+++++.+ |.++.++..++.++...|++++|+..|++++... | ++..+....
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~ 80 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIA 80 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHH
Confidence 345667778888999999999999998888 7888999999999999999999999999988765 3 554443333
Q ss_pred HH-HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 128 IA-LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 128 ~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
.. +...+...+|+..++++++..| .+...+..+..++...|++++|...|+++++..+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANP---------------------DNFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHhhcccchHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 22 2233344457888888877532 3577888888888888888888888888888755
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 207 RP-NLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 207 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
.+ +...+..++.++...|+.++|...|++...
T Consensus 140 ~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 140 GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 43 356777888888888888888888887654
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=2.4e-09 Score=105.84 Aligned_cols=242 Identities=10% Similarity=0.013 Sum_probs=167.0
Q ss_pred HHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHH
Q 046930 561 VQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKA 640 (965)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 640 (965)
...+-.|++..++.-..++...++ .....-..+.++..|+.... ..+.+...++..+.. |...+ |
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----C
T ss_pred HHHHHhhHHHHHHHHHHhcCccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----H
Confidence 345566778877775444433222 12223445677777776531 122233334344333 33322 7
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 046930 641 LDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMV-PSEVSYATLIYNLCKEGQLLDAKKLFDRMVL 719 (965)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (965)
+..|++..+.+ +++..++..++.++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888887765 446666778899999999999999999998876531 2467778888999999999999999999987
Q ss_pred CCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 046930 720 KGFKP-----STRIYNSFIDG--YCKFG--QLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTK 790 (965)
Q Consensus 720 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (965)
. .| +..+...|+.+ ....| ++.+|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 56 35555666555 44445 899999999999874 566333334444888999999999999977542
Q ss_pred -----CC---CCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 791 -----GV---SPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 791 -----~~---~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+. .|+... +.+++......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 11 366555 6578877777887 89999999998
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.18 E-value=5.8e-10 Score=113.42 Aligned_cols=165 Identities=10% Similarity=-0.015 Sum_probs=89.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh-hH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV-SY 123 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~ 123 (965)
.+...+..++..+...|++++|+..|+++++.+ |.++.++..++.++...|++++|+..|+++.... |+.. ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~ 188 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQG 188 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHH
Confidence 334445555555566666666666666666655 5555666666666666666666666666655543 2322 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
......+...++.++|+..+++++...| .+...+..+...+...|++++|...|.++++
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P---------------------~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENP---------------------EDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCC---------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2233334455555556666666555421 3455555566666666666666666665554
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 204 --DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 204 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
.+.. +...+..++.++...|+.++|...|++..
T Consensus 248 ~~p~~~-~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 248 XDLTAA-DGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTGG-GGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccccc-cchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3211 34455555666666666666666555543
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=6.1e-09 Score=104.58 Aligned_cols=231 Identities=12% Similarity=0.039 Sum_probs=168.5
Q ss_pred HHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 52 SLVYSFCSQGNM-SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG--KPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 52 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
..+++..+.|.+ ++|+..++.++..+ |.+..+|+..+.++...| ++++++++++.++..+ |.+..+|+....
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~ 111 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHH
Confidence 334444455555 69999999999999 899999999999999999 9999999999999987 777888987777
Q ss_pred HH----Hhc---CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHH
Q 046930 129 AL----CML---GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE--KAVGILN 199 (965)
Q Consensus 129 ~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~ 199 (965)
++ ... +++++++.+++++++.+ +.+..+|+.-.-++.+.|.++ ++++.++
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~---------------------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSD---------------------PKNHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 77 556 78899999999998864 367888888888888888888 8999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhH-HHHHHHHHH
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKGK------LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDC-AFRLLEDME 272 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 272 (965)
++++.++. |..+|+-...++...++ ++++++.++.++... +.|...|+.+...+.+.|+... +.....++.
T Consensus 171 ~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99988766 88888877766666665 677777777777665 5566677666666666665332 333444433
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 046930 273 KKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEE 338 (965)
Q Consensus 273 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (965)
+.+ ..-+.+..++..++..+.+.|+.++|+++++.+.+
T Consensus 249 ~~~----------------------------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLE----------------------------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGG----------------------------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcc----------------------------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 321 00023444455555555566666677777777665
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.16 E-value=4.3e-10 Score=97.50 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=91.9
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.....+...+..| .+.|++++|+..|.++++.. |.++.++..++.+|.+.|++++|+..|+++++.+ |.++.+
T Consensus 10 P~~a~~~~~~G~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~a 83 (126)
T 4gco_A 10 PELAQEEKNKGNEY-FKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKFIKG 83 (126)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred HHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhhhHH
Confidence 56667788888877 78888888888888888766 4567788888888888888888888888888887 778888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
|..++.++...|++++|++.|+++++.+ |.+..++..+..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~~ 123 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHHH
Confidence 8888888888888888888888888876 666666666554
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=2e-09 Score=95.28 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
++..+...|++++|...|+.+++.+ |.+..++..++..+...|++++|+..|++++... +.+...+..++.++..
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHH
Confidence 3333444444444444444444333 3333444444444444444444444444444332 2333334444444444
Q ss_pred cCChhHHHHHHHHHH
Q 046930 133 LGRVNEVNELFVRME 147 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~ 147 (965)
.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 82 QGDYDEAIEYYQKAL 96 (136)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444443
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.7e-09 Score=95.74 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..|+.++..+ ...|++++|+..|+.++... +.+...+..++..+...|++++|...|+++...+ |.+..++..+
T Consensus 2 ~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAY-YKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHH-HHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHH
Confidence 3577788877 78899999999999998865 4567788899999999999999999999999987 7788899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+.++...|++++|+..|++++... +.+...+..++.++...|++++|...++++....
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999999999999999999999876 6678889999999999999999999999998753
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=3.9e-09 Score=101.70 Aligned_cols=175 Identities=10% Similarity=-0.056 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC----ChhhH
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG----KPELA 103 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A 103 (965)
.+|++.|+++... .++.++..++..|...+++++|+..|+++.+.+ ++.++..++.+|.. + ++++|
T Consensus 3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 3467788887763 467788888888888899999999999888765 46788888888887 6 88899
Q ss_pred HHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC---HH
Q 046930 104 IGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD---TV 176 (965)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~ 176 (965)
+.+|+++.+ +.++.++..++.+|.. .+++++|+.+|+++.+.+ ++ +.
T Consensus 73 ~~~~~~A~~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----------------------~~~~~~~ 126 (212)
T 3rjv_A 73 RQLAEKAVE----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS----------------------ESDAAVD 126 (212)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST----------------------TSHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC----------------------CCcchHH
Confidence 999998876 4577788888888877 788889999888887653 32 67
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 046930 177 SYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK-G-----KLEEAFTVFKKVEDLG 240 (965)
Q Consensus 177 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 240 (965)
++..|...|.. .+++++|...|++..+. .++..++..|..+|... | ++++|...|+...+.|
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 78888888887 77888888888888876 22445667777777653 2 7888888888888776
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=8.8e-10 Score=112.07 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=142.6
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
|.+...+..++..+...|++++|+..|++++..+ |.+..++..++.++...|++++|...++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----------- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----------- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----------
Confidence 7788899999999999999999999999999987 778889999999999999999999999998765
Q ss_pred HHhhhhhhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 161 WICGQMVDKGIKPDTVSYTI-LLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
.|+...... ....+.+.++.++|...|++++...+. +...+..+..++...|++++|+..|.++.+.
T Consensus 181 -----------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 181 -----------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp -----------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 245443333 333466788889999999999987654 7889999999999999999999999999988
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046930 240 GLVA-DEFVYATLIDGVCRRGDLDCAFRLLEDMEK 273 (965)
Q Consensus 240 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 273 (965)
.... +...+..++..+...|+.++|...+++.+.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 5322 266889999999999999999999888764
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=6.7e-09 Score=100.01 Aligned_cols=174 Identities=11% Similarity=-0.021 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC----ChHHHHHH
Q 046930 638 NKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEG----QLLDAKKL 713 (965)
Q Consensus 638 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 713 (965)
.+|+..|++..+.| +..++..|+..|...+++++|+..|++..+.| ++..+..|...|.. + ++++|+++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677888887764 77888889999999999999999999998865 56677778877877 6 89999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCC---hhHHHHHHHHHHh----cCCHHHHHH
Q 046930 714 FDRMVLKGFKPSTRIYNSFIDGYCK----FGQLEEAFKFLHDLKINCLEPD---KFTVSAVINGFCQ----KGDMEGALG 782 (965)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~ 782 (965)
|++..+.| ++..+..|+.+|.. .+++++|+.+|++..+. .|. ..++..|...|.. .+++++|++
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99998765 67788899999987 88999999999999885 342 6788889999987 789999999
Q ss_pred HHHHhHhCCCCCChHHHHHHHHHHhcC-C-----CHHHHHHHHHHHHhc
Q 046930 783 FFLDFNTKGVSPDFLGFLYLVKGLCTK-G-----RMEEARSILREMLQS 825 (965)
Q Consensus 783 ~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~eA~~~~~~~~~~ 825 (965)
+|++..+. .++...+..|+.+|... | ++++|..+|+++.+.
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999774 33445677899888753 4 899999999999874
No 111
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=4.4e-08 Score=99.12 Aligned_cols=246 Identities=10% Similarity=-0.019 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG-NMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
++..+.... ...+..++|+..+..++... |.+..+++.-..++...| .+++++..++.++..+ |.+..+|+..
T Consensus 56 ~~~~~r~~~-~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---PKny~aW~hR 129 (349)
T 3q7a_A 56 AMDYFRAIA-AKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---LKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHH-HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---CCCHHHHHHH
T ss_pred HHHHHHHHH-HhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CCcHHHHHHH
Confidence 344433333 55666678999999999877 456677888888888888 5999999999999999 8999999999
Q ss_pred HHHHHhc-C-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCccchhhhhh
Q 046930 91 VSGFCKI-G-KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN--------EVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 91 ~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
..++... + ++++++++++++++.+ +.|..+|+....++.+.|.++ ++++.++++++.++
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp--------- 198 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG--------- 198 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC---------
Confidence 9999988 8 9999999999999887 788999998888888888777 99999999998653
Q ss_pred HHhhhhhhcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-------
Q 046930 161 WICGQMVDKGIKPDTVSYTILLDGFSKEGT-------IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKL------- 226 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------- 226 (965)
.|..+|+....++.+.++ ++++++.+++++...+. |...|+-+-..+.+.|+.
T Consensus 199 ------------~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 199 ------------RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp ------------TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred ------------CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccc
Confidence 678899988888888776 78999999999988666 888998877777776654
Q ss_pred -------------HHHHHHHHHHHHcC-----CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 227 -------------EEAFTVFKKVEDLG-----LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII 287 (965)
Q Consensus 227 -------------~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 287 (965)
.........+.... ..++...+..++..|...|+.++|.++++.+.+.--+.....|+-.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 22333333332221 13567778888899999999999999999987542222334444433
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=1.5e-09 Score=123.25 Aligned_cols=153 Identities=11% Similarity=0.017 Sum_probs=83.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHH
Q 046930 25 NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAI 104 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 104 (965)
|++++|+..|+++++.. +.+...+..++.++...|++++|++.|+++++.+ |.+..++..++.+|...|++++|+
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55666666666665543 3345566666666666666666666666666665 556666666666666666666666
Q ss_pred HHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHH
Q 046930 105 GFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDG 184 (965)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 184 (965)
+.|+++++.. |.+...+..++.++...|++++|.+.|+++.+.. +.+..++..+..+
T Consensus 78 ~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 78 VLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---------------------PEEPYITAQLLNW 134 (568)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHH
Confidence 6666666654 4555566666666666666666666666665542 1235555556666
Q ss_pred HHhc---CCHHHHHHHHHHHHHCC
Q 046930 185 FSKE---GTIEKAVGILNKMIEDR 205 (965)
Q Consensus 185 ~~~~---g~~~~A~~~~~~~~~~~ 205 (965)
+... |++++|.+.|+++++.+
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhhccccHHHHHHHHHHHHhcC
Confidence 6666 66666666666666543
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.08 E-value=1.7e-09 Score=93.74 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=57.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
..+...+..|.+.|++++|++.|+++++.+ |.++.+|..++.+|.+.|++++|+..|+++++.+ |.+..+|..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHH
Confidence 345555555666666666666666666555 5555666666666666666666666666666554 44555555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 046930 128 IALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
.++...|++++|+..|+++++.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666665554
No 114
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.2e-07 Score=93.92 Aligned_cols=188 Identities=10% Similarity=0.032 Sum_probs=137.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-----CHhh
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGI-TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVP-----SEVS 693 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~ 693 (965)
+..++..++.++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 455567889999999999999999999987754 236677888899999999999999999999884 46 3455
Q ss_pred HHHHHHH--HHc--cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC---CC-C
Q 046930 694 YATLIYN--LCK--EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN-----CL---EP-D 760 (965)
Q Consensus 694 ~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p-~ 760 (965)
...|+.+ ... .+++.+|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+. +. .| |
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 5566555 333 34999999999999875 455223333444899999999999999977652 00 25 4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 761 KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
..++.+++......|+ +|.++++++++ ..|+..... ++.+....|+++..+
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~----------d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIK----------HHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHH----------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHH----------HHHHHHHHHHHHHHH
Confidence 6677667666667786 89999999976 788876533 234444556655543
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=1.6e-09 Score=111.74 Aligned_cols=204 Identities=8% Similarity=-0.007 Sum_probs=140.8
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHccCChH
Q 046930 634 EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS-EVSYATLIYNLCKEGQLL 708 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~ 708 (965)
.+++++|...|.++ +..|...|++++|+..|.++.+. +-.+. ..++..+..+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 36677777776654 45667788888888888877653 11111 456778888888899999
Q ss_pred HHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-------hhHHHHHHHHHHhcCC
Q 046930 709 DAKKLFDRMVLK----GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-------KFTVSAVINGFCQKGD 776 (965)
Q Consensus 709 ~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~ 776 (965)
+|++.|++.++. |-.. ...++..++.+|.. |++++|+..|+++++. .|+ ..++..++.+|...|+
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV--FENEERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCC
Confidence 999999887753 2111 14577888999988 9999999999998763 221 3578889999999999
Q ss_pred HHHHHHHHHHhHhC----CCCCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHh
Q 046930 777 MEGALGFFLDFNTK----GVSPDFL-GFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISL 851 (965)
Q Consensus 777 ~~~A~~~~~~~~~~----~~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 851 (965)
+++|++.|+++++. +..+... .+..++.++...|++++|...|++++ ..+... .......+..++..+
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~------~~~e~~~l~~l~~~~ 243 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS------GSEDCAALEDLLQAY 243 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC------CCHHHHHHHHHHHHH
Confidence 99999999998762 2112222 46678888888999999999999998 543110 000111233444444
Q ss_pred hhcCcHHHHHHH
Q 046930 852 CEQGSILEAIAI 863 (965)
Q Consensus 852 ~~~g~~~~A~~~ 863 (965)
..|+.+++.++
T Consensus 244 -~~~d~~~~~~~ 254 (307)
T 2ifu_A 244 -DEQDEEQLLRV 254 (307)
T ss_dssp -HTTCHHHHHHH
T ss_pred -HhcCHHHHHHH
Confidence 56777666663
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=2.7e-09 Score=121.03 Aligned_cols=154 Identities=10% Similarity=0.004 Sum_probs=120.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 046930 60 QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEV 139 (965)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 139 (965)
.|++++|+..|+++++.+ |.+..++..++.++...|++++|++.|+++++.+ |.+..++..++.++...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 478899999999999988 7889999999999999999999999999999876 67788999999999999999999
Q ss_pred HHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 140 NELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFG 219 (965)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (965)
...|+++++.. +.+...+..+..++.+.|++++|.+.|+++++..+. +...+..+..+
T Consensus 77 ~~~~~~al~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 134 (568)
T 2vsy_A 77 AVLLQQASDAA---------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNW 134 (568)
T ss_dssp HHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999998764 245788899999999999999999999999987544 67888889999
Q ss_pred HHhc---CChHHHHHHHHHHHHcC
Q 046930 220 FCKK---GKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 220 ~~~~---g~~~~A~~~~~~~~~~~ 240 (965)
+... |++++|.+.++++.+.+
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhhccccHHHHHHHHHHHHhcC
Confidence 9999 99999999999998876
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.05 E-value=1.5e-09 Score=96.96 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=93.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.+...+..++..+.+.|++++|+..|+++++.+ |.++.+|..++.+|...|++++|+..|++++..+ |.++..|.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~ 108 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHH
Confidence 356678899999999999999999999999999 8999999999999999999999999999999987 77888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.++.+|...|++++|+..|+++++..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999863
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=2.7e-07 Score=100.93 Aligned_cols=391 Identities=9% Similarity=-0.040 Sum_probs=220.2
Q ss_pred cC-CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC-hh
Q 046930 24 RN-DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK-PE 101 (965)
Q Consensus 24 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 101 (965)
.| +...|..+|+.++...|. |+++.+..+|++.+... | +...|...+....+.+. .+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~~---p-s~~LW~~Y~~f~~~~~~~~~ 65 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKKS---Y-NLDLWMLYIEYVRKVSQKKF 65 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTTC---C-CHHHHHHHHHHHHHHC----
T ss_pred cCcchHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhccC---C-CHHHHHHHHHHHHHhCchHH
Confidence 45 377788888887765432 78889999999988854 4 77888888887777663 46
Q ss_pred hHHHHHHHHHHcCCC-CCCHhhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH
Q 046930 102 LAIGFFENAISLGAL-KPNVVSYTSLVIALC----MLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV 176 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 176 (965)
.....|+.++..-|. +.+...|...+..+. ..++.+.+..+|++++..++..-...|.....-+.. .+..
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-----~~~~ 140 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-----LNKI 140 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-----HCHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-----hccc
Confidence 677888888865322 446677777776543 245678888899998874221111111111110110 1122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 177 SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG--K-----LEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 177 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
+...++.-. .+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|.
T Consensus 141 ~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~ 217 (493)
T 2uy1_A 141 TGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYF 217 (493)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred cHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 222222221 2345555666655543211113445655554422211 1 345678899988764 55678888
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHH
Q 046930 250 TLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGI 329 (965)
Q Consensus 250 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 329 (965)
..+..+.+.|+++.|..+|++.... +.+...+.. |....+.++. +..+...+.........
T Consensus 218 ~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~-------------~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 218 FYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV-------------YGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH-------------HHHHHHHTC--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH-------------HHHHHHHHHhhccchhh
Confidence 8888888899999999999999987 323333322 2211111111 11111111000000000
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 046930 330 LETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLG-RIEEALEIFDELRR 408 (965)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 408 (965)
. .. .......|...+....+.+..+.|..+|+.+ +.. ..+..+|...+..-...+ +.+.|..+|+...+
T Consensus 279 ------~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 279 ------K-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred ------h-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 00 0011245666666666677788888888887 321 223444443333333333 68888888888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHh
Q 046930 409 MSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIEN 477 (965)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 477 (965)
..|.++..|...+......|+.+.|..+|+++. .....+...+..=...|+.+.+..++++...
T Consensus 349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 776677777777777778888888888888862 2344444444444555888878777776553
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=7.3e-09 Score=92.39 Aligned_cols=102 Identities=12% Similarity=-0.003 Sum_probs=95.5
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...++.++..+ .+.|++++|+..|++++... |.++..+..++.+|...|++++|+..|+++++.+ |.++.+
T Consensus 33 p~~~~~~~~lg~~~-~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~ 106 (151)
T 3gyz_A 33 DDMMDDIYSYAYDF-YNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHH
T ss_pred HHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHH
Confidence 67777899999987 89999999999999999977 5688899999999999999999999999999999 889999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
|..++.+|...|++++|+..|+++++..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999965
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=2.1e-08 Score=97.10 Aligned_cols=130 Identities=12% Similarity=-0.030 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..++.++..+ ...|++++|+..|++++ ++++.++..++.++...|++++|+..|+.+++.+ |.+..++..+
T Consensus 7 ~~~~~~g~~~-~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l 77 (213)
T 1hh8_A 7 ISLWNEGVLA-ADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHH
Confidence 3566777776 78999999999999864 4578899999999999999999999999999998 7889999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCH----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNV----------------VSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
+.+|...|++++|++.|+++++.. +.+. ..+..++.++...|++++|...|+++++..+
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999999865 3333 7889999999999999999999999998643
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.95 E-value=5.1e-09 Score=102.13 Aligned_cols=190 Identities=7% Similarity=-0.069 Sum_probs=88.1
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCChhHHHHHHHHHHhcCCCC--------C-------
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSL-------VYSFCSQGNMSRAVEVLELMSDENVKY--------P------- 81 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~------- 81 (965)
.+++..|++.|.++.... |.....|..+ ..++...++..+++..+...+...+.. +
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 455555656565555544 3344455555 444555555555555555554422100 0
Q ss_pred ---CchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhh
Q 046930 82 ---FDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFY 158 (965)
Q Consensus 82 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (965)
....+....+..+...|++++|.+.|+.+...+ |.+. ....++..+.+.+++++|+..|+...+..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------- 165 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-------- 165 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--------
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--------
Confidence 001233334455555555555555555554432 2222 44444445555555555555554333210
Q ss_pred hhHHhhhhhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 159 SCWICGQMVDKGIKP--DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN--LITYTAIIFGFCKKGKLEEAFTVFK 234 (965)
Q Consensus 159 ~~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 234 (965)
.| ...++..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+
T Consensus 166 -------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 166 -------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 01 012344455555555555555555555543221122 2233444445555555555555555
Q ss_pred HHHHc
Q 046930 235 KVEDL 239 (965)
Q Consensus 235 ~~~~~ 239 (965)
++...
T Consensus 233 ~a~a~ 237 (282)
T 4f3v_A 233 WLQTT 237 (282)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=2.1e-08 Score=103.25 Aligned_cols=198 Identities=8% Similarity=-0.019 Sum_probs=109.2
Q ss_pred ccCCchHHHHHHHHHHHhCCC-----CCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CCchHHHHHH
Q 046930 23 KRNDPEKALLVLKDCLRNHGT-----LPSS----FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKY---PFDNFVCSSV 90 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l 90 (965)
..|++++|..+++++.+.... .++. ..|...+.+|...|++++|...|.++++..... +....++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356777888888776653210 1121 134445566667777777777777666543100 1123466677
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
+.+|...|++++|+..|++++....-..+ ..++..++.+|.. |++++|+..|+++++...
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~--------------- 146 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE--------------- 146 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH---------------
Confidence 77777777777777777776653100111 2355666666666 777777777777665311
Q ss_pred hhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 167 VDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNKMIEDR----LRPN-LITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 167 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
..+..+ ...+++.+...|.+.|++++|+..|+++++.. ..+. ..++..++.++...|++++|...|++..
T Consensus 147 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 147 -NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 000000 13456666666666677777776666665531 1111 1234444555555566666666666665
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=1.1e-07 Score=96.09 Aligned_cols=249 Identities=12% Similarity=0.028 Sum_probs=175.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
..+..........++|+++++.++..+ |.+..+|+....++...| .+++++.+++.++..+ |.+..+|+....+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wl 132 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 333333444555679999999999999 899999999999999999 5999999999999987 7888899998888
Q ss_pred HHhc-C-ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHH
Q 046930 130 LCML-G-RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE--------KAVGILN 199 (965)
Q Consensus 130 ~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~ 199 (965)
+... + ++++++.+++++++.+ +.|..+|+.-.-++.+.|.++ ++++.++
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~d---------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPD---------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSC---------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 8887 7 8999999999999865 367888887776666666666 8999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH-
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKGK-------LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM- 271 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 271 (965)
++++.++. |..+|+-...++.+.++ ++++++.+.+++... +.|...|+-+-..+.+.|....- ++...
T Consensus 192 k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~--~~~~~~ 267 (349)
T 3q7a_A 192 EMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVP--ILPAIL 267 (349)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGG--GHHHHG
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccc--cccccc
Confidence 99988766 88889888888777776 678888888888776 56777787766666555543100 00000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC------CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHc
Q 046930 272 EKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG------ILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEA 339 (965)
Q Consensus 272 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (965)
...|...+. ....+... +.++... -.+...++..++..|...++.++|.++++.+.+.
T Consensus 268 ~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 268 PYTASKLNP-DIETVEAF---------GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGTC------------------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccc-cchhHHHH---------HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000000000 00001111 1111111 1356777888888888888889999999888643
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=2.6e-09 Score=95.70 Aligned_cols=112 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 32 LVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
..|+.++... +.+...+..++..+...|++++|+..|+.++..+ |.++.+|..++.++...|++++|+..|++++
T Consensus 8 ~~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 8 GTIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp CSHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456655433 3456677888888999999999999999999888 7888999999999999999999999999999
Q ss_pred HcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 112 SLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..+ |.++..+..++.++...|++++|+..|+++++..
T Consensus 83 ~l~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 83 VMD--IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 876 6777888899999999999999999999988753
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=1.6e-09 Score=109.73 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
..+..++..+...|++++|+..|+.+++.+ |.+..++..++.+|.+.|++++|+..|+++++.+ |.+..++..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 344444444555555555555555555444 4444455555555555555555555555554433 33444444555
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.++...|++++|+..|+++.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555554443
No 126
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.92 E-value=6.2e-07 Score=90.44 Aligned_cols=223 Identities=7% Similarity=-0.018 Sum_probs=172.7
Q ss_pred HccCCch-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 22 IKRNDPE-KALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGN----------MSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 22 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.+.|.++ +|+..+..++... |....+|+.-..++...+. +++++.+++.++..+ |.+..+|+..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~---PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 4567776 7999999998765 3455556665555555444 689999999999998 8999999999
Q ss_pred HHHHHhcCC--hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCccchhhhhhHHhhhhh
Q 046930 91 VSGFCKIGK--PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR-VNEVNELFVRMESEGLKFDVVFYSCWICGQMV 167 (965)
Q Consensus 91 ~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (965)
.-++...|+ +++++.+++++++.+ |.|..+|+....++...|. ++++++.+.++++.++
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p---------------- 176 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---------------- 176 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS----------------
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC----------------
Confidence 999999995 899999999999988 8899999999998999998 5999999999998753
Q ss_pred hcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------
Q 046930 168 DKGIKPDTVSYTILLDGFSKE--------------GTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK---------- 223 (965)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 223 (965)
.|..+|+.....+... +.++++++.+.+++...+. |..+|+-+-..+.+.
T Consensus 177 -----~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 177 -----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred -----CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHH
Confidence 6788888777666654 4588999999999988665 888887655555554
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH---HhcCCHhHHHHHHHHHHHC
Q 046930 224 -GKLEEAFTVFKKVEDLGLVADEFVYATLIDGV---CRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 224 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 274 (965)
+.++++++.++++.+.. +.+...+..++... ...+..+++...+.++.+.
T Consensus 251 ~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 251 STVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45789999999999885 33333333333221 1356777888888888876
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.92 E-value=1.9e-08 Score=88.66 Aligned_cols=124 Identities=7% Similarity=0.018 Sum_probs=105.3
Q ss_pred cccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 4 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
...|.....|..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|+..|+++++.+ |.+
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~ 83 (133)
T 2lni_A 10 HMNPDLALMVKNKGNEC-FQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTF 83 (133)
T ss_dssp CSSSCHHHHHHHHHHHH-HHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTC
T ss_pred CcCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCc
Confidence 34466777888898887 78999999999999988754 4577888999999999999999999999999988 778
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (965)
..++..++.++...|++++|+..|++++... |.+...+..+..++...|+
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999876 5566677788877776653
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=8.5e-09 Score=100.60 Aligned_cols=197 Identities=8% Similarity=-0.007 Sum_probs=155.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCCC------------
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSV-------VSGFCKIGKPELAIGFFENAISLGALKPN------------ 119 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------ 119 (965)
..++...|.+.|.++...+ |..+.+|..+ +.++.+.++..+++..+++.+... |+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~---p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS---MSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC---GGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC---hhhhhhhhccCCcc
Confidence 5799999999999999999 8999999999 799999999999999999988732 22
Q ss_pred ----------HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcC
Q 046930 120 ----------VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEG 189 (965)
Q Consensus 120 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g 189 (965)
...+..++.++...|++++|.++|+.+...+ |+......+...+.+.+
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~----------------------p~~~~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----------------------SEHLVAWMKAVVYGAAE 149 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT----------------------CHHHHHHHHHHHHHHTT
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------------------CchHHHHHHHHHHHHcC
Confidence 1233456778899999999999998887542 44336667777899999
Q ss_pred CHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHhHHH
Q 046930 190 TIEKAVGILNKMIEDRLRPN--LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD--EFVYATLIDGVCRRGDLDCAF 265 (965)
Q Consensus 190 ~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 265 (965)
++++|+..|+...... .|. ...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|.
T Consensus 150 r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp CHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999998665431 111 34677889999999999999999999985432143 345666777889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHH
Q 046930 266 RLLEDMEKKGIKPSIVTYNTI 286 (965)
Q Consensus 266 ~~~~~~~~~g~~~~~~~~~~l 286 (965)
.+|+++... .|+...+..|
T Consensus 229 ~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 229 ALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHhc--CCcHHHHHHH
Confidence 999999987 4454444443
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=6.9e-09 Score=92.98 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 046930 65 RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFV 144 (965)
Q Consensus 65 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 144 (965)
.+...|++++..+ |.+..++..++..+...|++++|+..|++++..+ |.++..|..++.++...|++++|+..|+
T Consensus 5 ~~~~~~~~al~~~---p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 5 SGGGTIAMLNEIS---SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp -CCCSHHHHTTCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhhHHHHHcCC---HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3345677788777 7888999999999999999999999999999887 7788899999999999999999999999
Q ss_pred HHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 145 RMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
+++..++ .++.++..+..++...|++++|...|+++++..
T Consensus 80 ~al~l~p---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 80 YGAVMDI---------------------XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHST---------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCC---------------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9988642 457788889999999999999999999998764
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=2.8e-08 Score=91.60 Aligned_cols=132 Identities=8% Similarity=-0.013 Sum_probs=114.7
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
....|..++..+ ...|+++.|+..|.+++... +.+..++..++.++...|++++|+..|+++++.+ |.+..++.
T Consensus 12 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~ 85 (166)
T 1a17_A 12 RAEELKTQANDY-FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHH
Confidence 344778888877 78999999999999999876 4578889999999999999999999999999998 78899999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH--HHHHHHHhcCChhHHHHHHHHHHH
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT--SLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.++.++...|++++|+..|++++... |.+...+. ..+..+...|++++|+..+.+...
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999999976 55666664 444458888999999999988764
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=1.6e-07 Score=95.89 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=125.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-C----hhHHH
Q 046930 696 TLIYNLCKEGQLLDAKKLFDRMVLK-GFKPST----RIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-D----KFTVS 765 (965)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~ 765 (965)
..+..+...|++++|.+++++..+. ...|+. ..+..++..+...|++++|+..+++++...... + ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788999999999999999874 222332 233467888888899999999999998742222 2 23689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHh----C-CCCCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc
Q 046930 766 AVINGFCQKGDMEGALGFFLDFNT----K-GVSPDFL-GFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV 839 (965)
Q Consensus 766 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 839 (965)
.++.+|...|++++|+++|+++++ . +..|... .+..++.+|.+.|++++|+.+++++++..+. .+..+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~------~~~~~ 233 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR------INSMA 233 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTBCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------cCcHH
Confidence 999999999999999999999874 1 2233333 4889999999999999999999999974221 11122
Q ss_pred c-cccHHHHHHHhhhcC-cHHHHHHHHHHHh
Q 046930 840 E-SESVLNFLISLCEQG-SILEAIAILDEIG 868 (965)
Q Consensus 840 ~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 868 (965)
. ...+..++..+.+.| .+++|++.+++..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 345677888888999 5799999999864
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=2e-08 Score=101.61 Aligned_cols=102 Identities=7% Similarity=-0.046 Sum_probs=85.9
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...+..++..+ ...|++++|+..|+.++... +.+...+..++.++...|++++|+..|+++++.+ |.+..+
T Consensus 1 p~~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~ 74 (281)
T 2c2l_A 1 SPSAQELKEQGNRL-FVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKA 74 (281)
T ss_dssp CCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHH
T ss_pred ChhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHH
Confidence 55667788888877 78889999999999988865 4577788888888889999999999999988887 788888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+..++.+|...|++++|+..|++++..+
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999999888754
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.90 E-value=2.4e-08 Score=87.55 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=108.6
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.+...+..++..+ ...|+++.|+..|++++... +.+..++..++.++...|++++|+..++.++..+ |.+..
T Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 81 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQ-MKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred chhhhHHHHHHHHHH-HHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHH
Confidence 356667888888887 78999999999999999876 4577889999999999999999999999999987 78889
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
++..++.++...|++++|+..|++++... |.+...+..++.++...|++
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999876 66788888898888888765
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=4.1e-08 Score=90.51 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=111.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|++++... |.+...+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~ 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 3567788889999999999999999999988 7889999999999999999999999999999976 6778899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYT--ILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
+.++...|++++|...|+++++..+ .+...+. .++..+...|++++|...+.....
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP---------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999987642 3444443 344447778899999988887653
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=3.3e-09 Score=110.46 Aligned_cols=152 Identities=13% Similarity=-0.023 Sum_probs=123.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---------------hHHHH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---------------NFVCS 88 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~ 88 (965)
.++++.|+..|+.++... +.....+..++..+.+.|++++|+..|+++++.. |.+ ..++.
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHH
Confidence 355666766666655432 3356678888999999999999999999999988 555 58899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++.+|.+.|++++|+..|++++..+ |.+..++..++.+|...|++++|+..|+++++..+
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----------------- 261 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP----------------- 261 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----------------
Confidence 99999999999999999999999887 67888999999999999999999999999988642
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKA-VGILNKMIE 203 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 203 (965)
.+..++..+..++.+.|++++| ...|..|..
T Consensus 262 ----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 262 ----NNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888988888 446666653
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=1.6e-08 Score=94.50 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=108.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHhcCCh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSG-FCKIGKP 100 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 100 (965)
...|+++.|+..|+.++... +.+..++..++.+|...|++++|+..|+++++.+ |.++.++..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCc
Confidence 46789999999999999876 5678899999999999999999999999999998 7889999999999 8899999
Q ss_pred --hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 101 --ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 101 --~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++|+..|++++... |.+...+..++.++...|++++|...|+++++..
T Consensus 96 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999986 6778899999999999999999999999999864
No 137
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.88 E-value=3e-06 Score=92.67 Aligned_cols=363 Identities=10% Similarity=-0.020 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH----hcCCh
Q 046930 359 GALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGR-IEEALEIFDELRRM---SISSVACYNCIINGLC----KSGMV 430 (965)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~----~~g~~ 430 (965)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+.++.. ++.+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888888874 3788888877777666663 45567778877765 4567788888777654 24567
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 046930 431 DMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFM 510 (965)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (965)
+.+..+|++++..+ ..+...++.....+....+...+..++.+ ....+..|...++.+
T Consensus 106 ~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~---------------------~~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGD---------------------TLPIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHH---------------------HhHHHHHHHHHHHHH
Confidence 88888999888742 12222222222222222222222222211 112334444444443
Q ss_pred HhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchH
Q 046930 511 RKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPV 590 (965)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 590 (965)
...-...+...|...+. +.+.++...... +....+...|+++
T Consensus 164 ~~~~~~~s~~~W~~y~~-----------------~E~~~~~~~~~~----------~~~~Rv~~~ye~a----------- 205 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLID-----------------LEMENGMKLGGR----------PHESRMHFIHNYI----------- 205 (493)
T ss_dssp HHHHHTCSHHHHHHHHH-----------------HHHTCTTCCCHH----------HHHHHHHHHHHHH-----------
T ss_pred HHHHhhccHHHHHHHHH-----------------HHhcCCccCcch----------hhHHHHHHHHHHH-----------
Confidence 32100001111211111 111111100000 0011122223332
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQG 670 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 670 (965)
....| .++..|...+..+.+.|+.++|..+|++.+.. +.+...|.. |....
T Consensus 206 ----------------------l~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~ 256 (493)
T 2uy1_A 206 ----------------------LDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVM 256 (493)
T ss_dssp ----------------------HHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHT
T ss_pred ----------------------HHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhc
Confidence 22222 24667777777777778888888888887776 323333322 22211
Q ss_pred cHHHHHHHHHHHHhC---C------C---CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046930 671 CFVEAFRLFDSLERI---D------M---VPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCK 738 (965)
Q Consensus 671 ~~~~A~~~~~~~~~~---~------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 738 (965)
..++. ++.+.+. . . ......|...+....+.+..+.|.++|+++ +.. ..+...|...+..-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence 11111 2222211 0 0 011345666677777788899999999999 421 2344555544444444
Q ss_pred cC-CHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHH
Q 046930 739 FG-QLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEAR 816 (965)
Q Consensus 739 ~g-~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~ 816 (965)
.| +.+.|..+|+...+. .|+ ...|...+......|+.+.|..+|+++. .....+...+..-...|+.+.+.
T Consensus 332 ~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 44 699999999999875 354 4556667777788899999999999972 13344665555556789999999
Q ss_pred HHHHHHHh
Q 046930 817 SILREMLQ 824 (965)
Q Consensus 817 ~~~~~~~~ 824 (965)
++++++.+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999886
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.88 E-value=2.3e-08 Score=104.05 Aligned_cols=136 Identities=18% Similarity=0.086 Sum_probs=120.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-------------HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-------------SFTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
|.....|..++..+ ...|++++|+..|++++...+..++ ..++..++.+|.+.|++++|+..|+++
T Consensus 144 p~~a~~~~~~g~~~-~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 144 LEQSTIVKERGTVY-FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566888888887 7999999999999999987643221 578999999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 046930 74 SDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEV-NELFVRMES 148 (965)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 148 (965)
++.+ |.++.++..++.+|...|++++|+..|+++++.. |.+..++..++.++...|++++| ...|++|..
T Consensus 223 l~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 223 LELD---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 8899999999999999999999999999999987 77888999999999999999998 457777754
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.86 E-value=2.4e-06 Score=86.17 Aligned_cols=191 Identities=9% Similarity=0.037 Sum_probs=146.9
Q ss_pred HHHhcCChh-HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 56 SFCSQGNMS-RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK----------PELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 56 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
...+.|.++ +|+..++.++..+ |.+..+|+....++...++ +++++.+++.++..+ |.+..+|+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~ 112 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWH 112 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 345667766 8999999999999 8999999999998887766 689999999999887 78889999
Q ss_pred HHHHHHHhcCC--hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 046930 125 SLVIALCMLGR--VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGT-IEKAVGILNKM 201 (965)
Q Consensus 125 ~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 201 (965)
....++...++ +++++.++.++++.++ .|..+|+.-.-+....|. ++++++.++++
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dp---------------------rNy~AW~~R~~vl~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADE---------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 98888888884 8999999999998753 678889888888888888 68999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc---------
Q 046930 202 IEDRLRPNLITYTAIIFGFCKK--------------GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR--------- 258 (965)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 258 (965)
++.++. |..+|+....++... +.++++++.+...+... |.|...|+-+-..+.+.
T Consensus 172 I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 172 ITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchH
Confidence 998766 888888777666655 34667777777777665 55666666444333332
Q ss_pred --CCHhHHHHHHHHHHHC
Q 046930 259 --GDLDCAFRLLEDMEKK 274 (965)
Q Consensus 259 --g~~~~A~~~~~~~~~~ 274 (965)
+.++++++.++++.+.
T Consensus 250 ~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 250 KSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 2344555555555544
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=2e-08 Score=89.51 Aligned_cols=102 Identities=12% Similarity=-0.065 Sum_probs=62.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...+..++..+ ...|++++|+..|+.++... |.++..+..++.++...|++++|+..|++++..+ |.++.+
T Consensus 15 p~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 88 (142)
T 2xcb_A 15 EDTLEQLYALGFNQ-YQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHH
T ss_pred HHHHHHHHHHHHHH-HHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHH
Confidence 34444555555554 56666666666666666544 3455556666666666666666666666666665 555666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+..++.+|...|++++|+..|++++...
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666666666666666666666543
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.85 E-value=6.7e-08 Score=98.80 Aligned_cols=173 Identities=11% Similarity=-0.012 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CCch
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS----FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKY---PFDN 84 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 84 (965)
.+...+..+ ...|++++|+..+..++......+.. ..+..++..+...|++++|+..|+++++..... ....
T Consensus 77 ~l~~~~~~~-~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIML-CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 445556665 78899999999999988865432211 234557777888899999999999998754211 1125
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH---cCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAIS---LGALKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
.+++.++.+|...|++++|+..|++++. .. +.+ ..++..++.+|...|++++|+..++++++...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~------ 227 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC------ 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH------
Confidence 6899999999999999999999999983 22 222 25788999999999999999999999886421
Q ss_pred hhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 046930 158 YSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKA-VGILNKMIE 203 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 203 (965)
..+... -..+|..++.+|.+.|++++| ...|++++.
T Consensus 228 ----------~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 ----------RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ----------HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ----------hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 111111 266788888899999999999 777877754
No 142
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=1.2e-07 Score=91.56 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=116.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
..+..++..+...|++++|+..|+.++ ++++.++..++.+|...|++++|+..|++++... |.+..++..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg 78 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 345677888999999999999999884 3367899999999999999999999999999987 77888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
.++...|++++|+..|+++++..+......+.. ......| ...++..++.++...|++++|...|+++++..+
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH------hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999998643211000000 0000112 247788899999999999999999999998754
Q ss_pred C
Q 046930 207 R 207 (965)
Q Consensus 207 ~ 207 (965)
.
T Consensus 153 ~ 153 (213)
T 1hh8_A 153 E 153 (213)
T ss_dssp S
T ss_pred c
Confidence 3
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=4.8e-08 Score=85.95 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=104.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.+...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|+++++.. +.+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~ 87 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGY 87 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHH
Confidence 3456778999999999999999999999999988 7889999999999999999999999999999976 6788899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcC
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEG 189 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g 189 (965)
..++.++...|++++|+..|+++.+..+ .+...+..+..++...|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p---------------------~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDS---------------------SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCG---------------------GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCC---------------------CchHHHHHHHHHHHHhc
Confidence 9999999999999999999999987532 23556666666666554
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=4.7e-08 Score=85.00 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=65.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+.+.|++++|+..|+++++.+ |.++.++..++.++.+.|++++|+..|+++++.+ |.+...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 3445556666666677777777777766666 5666667777777777777777777777776655 5556666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 046930 127 VIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+.++...|++++|+..|+++++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 66677777777777777666654
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=9.7e-08 Score=82.78 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
...|..++..+ ...|+++.|+..|.+++... +.+..++..++.++...|++++|+..|+.+++.+ |.+..++..
T Consensus 9 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAY-YKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHH
Confidence 56788888876 78899999999999988765 4567788888999999999999999999998887 778888999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhc
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCML 133 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (965)
++.++...|++++|...|++++... |.+...+..++.++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhc
Confidence 9999999999999999999998876 56677777777666544
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.82 E-value=6.3e-09 Score=99.27 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=96.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch----------------HHH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN----------------FVC 87 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~ 87 (965)
.|+++.|...+....... ......+..++..+...|++++|+..|+++++.. |.++ .++
T Consensus 17 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF---IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHH
Confidence 344555544444322211 1234456677778888888888888888888776 3343 677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhh
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMV 167 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (965)
..++.+|...|++++|+..|++++... |.+..++..++.++...|++++|+..|+++++..+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------------- 153 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP---------------- 153 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC----------------
Confidence 888888888888888888888888776 66777888888888888888888888888876531
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 046930 168 DKGIKPDTVSYTILLDGFSKEGTIEKAV-GILNKMI 202 (965)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 202 (965)
.+..++..+..++...++.+++. ..|..+.
T Consensus 154 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 154 -----NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666776666666665555 3444443
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=1.9e-07 Score=95.32 Aligned_cols=163 Identities=10% Similarity=-0.033 Sum_probs=118.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCC-CCCCH----hhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC----hhhHHH
Q 046930 662 VIHSLCRQGCFVEAFRLFDSLERID-MVPSE----VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFK-PS----TRIYNS 731 (965)
Q Consensus 662 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 731 (965)
.+..+...|++++|...+++..+.. ..|+. ..+..+...+...|++++|++.|+++++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566777888888888888877632 12221 12334666777778889999999988874211 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-hHHHH
Q 046930 732 FIDGYCKFGQLEEAFKFLHDLKIN-----CLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD-FLGFL 800 (965)
Q Consensus 732 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 800 (965)
++.+|...|++++|+..|+++++. +..+. ..++..++.+|...|++++|++.++++++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999888741 11222 247889999999999999999999988652 22233 34588
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHh
Q 046930 801 YLVKGLCTKG-RMEEARSILREMLQ 824 (965)
Q Consensus 801 ~l~~~~~~~g-~~~eA~~~~~~~~~ 824 (965)
.++.++.+.| .+++|...|++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8999999999 47999999999987
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=3.6e-08 Score=92.02 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=104.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH-HHhcCC
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA-LCMLGR 135 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 135 (965)
+...|++++|+..|+.+++.+ |.+..++..++.+|...|++++|+..|++++... |.+...+..++.+ +...|+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTT
T ss_pred hhhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCC
Confidence 346789999999999999988 7888999999999999999999999999999876 6778888889988 778999
Q ss_pred h--hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046930 136 V--NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 136 ~--~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (965)
+ ++|+..|+++++..+ .+..++..++.++...|++++|...|+++++..+.
T Consensus 95 ~~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDS---------------------NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CCCHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred cchHHHHHHHHHHHHhCC---------------------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 8 999999999987632 45778888999999999999999999999987543
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=1.4e-07 Score=96.33 Aligned_cols=168 Identities=9% Similarity=-0.039 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHccCChHHHHHHHHHHHHCC---CCCC--h
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-----EVSYATLIYNLCKEGQLLDAKKLFDRMVLKG---FKPS--T 726 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~ 726 (965)
..+...+..+...|++++|++.+.+.++.....+ ...+..+...+...|++++|++.++++++.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999999888877432111 1223446667788899999999999988631 1111 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-
Q 046930 727 RIYNSFIDGYCKFGQLEEAFKFLHDLKIN-CLEPD-----KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD- 795 (965)
Q Consensus 727 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~- 795 (965)
.+++.++.+|...|++++|+..|+++.+. ...|+ ..++..++.+|...|++++|++.+++.++. +..+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57889999999999999999999998732 01232 158889999999999999999999998652 11111
Q ss_pred hHHHHHHHHHHhcCCCHHHH-HHHHHHHHh
Q 046930 796 FLGFLYLVKGLCTKGRMEEA-RSILREMLQ 824 (965)
Q Consensus 796 ~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~ 824 (965)
...+..++.++.+.|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34588899999999999999 788998876
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=6.5e-08 Score=84.10 Aligned_cols=102 Identities=6% Similarity=0.003 Sum_probs=93.6
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...|..++..+ ...|++++|+..|.+++... +.++..+..++.++.+.|++++|+..|+++++.+ |.++.+
T Consensus 1 p~~a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~ 74 (126)
T 3upv_A 1 SMKAEEARLEGKEY-FTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRA 74 (126)
T ss_dssp CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred CchHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHH
Confidence 45667888899887 79999999999999999876 5678899999999999999999999999999998 888999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+..++.++...|++++|+..|++++...
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999853
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.81 E-value=4.3e-08 Score=85.03 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=77.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-CC----Hh
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALK-PN----VV 121 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~----~~ 121 (965)
..++..++..+.+.|++++|+..|+++++.+ |.++.+|..++.+|...|++++|++.|+++++..+-. ++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456678888888888888888888888887 7788888888888888888888888888888754111 11 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 122 SYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 122 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+|..++.++...|++++|++.|++.++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677888888888888888888888764
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=5.4e-08 Score=85.30 Aligned_cols=121 Identities=15% Similarity=0.070 Sum_probs=106.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.+...+..++..+...|++++|+..|++++... |.+..++..++.++...|++++|+..|++++... |.+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 84 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHH
Confidence 345678889999999999999999999999988 7889999999999999999999999999999876 67788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCH
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTI 191 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 191 (965)
.++.++...|++++|...|+++.+..+ .+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p---------------------~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDP---------------------DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCc---------------------cchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987632 4577788888888777654
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=1.9e-08 Score=89.68 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=92.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.+...+..++..+.+.|++++|+..|+.++..+ |.++.+|..++.++...|++++|+..|++++..+ |.++..+.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 90 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHH
Confidence 345667888999999999999999999999998 8899999999999999999999999999999987 77888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
.++.++...|++++|+..|+++++.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.9e-07 Score=80.84 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=91.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|++.|++++..+ |.+..++..++.++...|++++|+..|++++... +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHH
Confidence 5678889999999999999999999999987 7888999999999999999999999999999876 6788899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC
Q 046930 127 VIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+.++...|++++|...|+++.+..
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999998753
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=1.2e-07 Score=86.99 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=94.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
+.....|..++..+ ...|++++|+..|++++... +.+...+..++.+|...|++++|+..|+++++.+ |.+..+
T Consensus 8 ~~~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 81 (164)
T 3sz7_A 8 TPESDKLKSEGNAA-MARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKYSKA 81 (164)
T ss_dssp CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred hhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHH
Confidence 45566888888887 78999999999999999876 4578889999999999999999999999999998 788999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
|..++.+|...|++++|+..|++++... |.+...|.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 117 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAE--GNGGSDAM 117 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSSCCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHH
Confidence 9999999999999999999999999876 44444443
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=9.2e-08 Score=82.92 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=94.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD--- 83 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 83 (965)
+.....+..++..+ .+.|++++|+..|.+++... |.+..++..++.+|...|++++|+..|+++++.++..+..
T Consensus 5 ~d~A~a~~~lG~~~-~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 5 TDAAIAEKDLGNAA-YKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 34556888899988 79999999999999999976 5678889999999999999999999999999876322221
Q ss_pred -hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 84 -NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 84 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
..++..++.++...|++++|++.|++++.. .|++.....
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~ 121 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHH
Confidence 357889999999999999999999999985 467665443
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.74 E-value=5.9e-08 Score=83.22 Aligned_cols=96 Identities=15% Similarity=0.029 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+..++..+.+.|++++|+..|+++++.+ |.++.+|..++.++...|++++|+..|++++..+ |.+...+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 34556667777777888888887777777 6777777777777777888888888887777766 566677777777
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 046930 129 ALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~ 149 (965)
++...|++++|+..|+++++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777888888777777754
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=1.7e-07 Score=82.95 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=77.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.++..+..++..+...|++++|+..|+.++..+ |.++.++..++.++...|++++|+..|++++..+ |.+...+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 80 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAH 80 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHH
Confidence 3456677777777888888888888888877777 6677778888888888888888888888887765 5667777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
..++.++...|++++|+..|+++++.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77888888888888888888777764
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=3.4e-07 Score=78.29 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
...+..++..+ ...|++++|+..|..++... +.+...+..++.++...|++++|...++++++.+ |.+..++..
T Consensus 4 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKA-LSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHH-HHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHHH
Confidence 34666777766 67888888888888887765 4466777788888888888888888888888877 677788888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
++.++...|++++|...|+++++.. |.+...+..+..+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 115 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHh
Confidence 8888888888888888888888765 4555555555443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=4e-07 Score=77.78 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=91.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
....+..++..+...|++++|+..|+.++..+ |.++.++..++.++...|++++|+..|++++... |.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 77 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 34567888999999999999999999999988 7889999999999999999999999999999976 667889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++.++...|++++|...|+++.+.+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999998764
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=1.1e-07 Score=90.49 Aligned_cols=135 Identities=14% Similarity=0.035 Sum_probs=108.1
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--------------SFTFCSLVYSFCSQGNMSRAVEVLELMS 74 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (965)
....+..++..+ ...|++++|+..|++++...+..++ ..++..++.++...|++++|+..++.++
T Consensus 37 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEF-FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444677778776 7899999999999999986543331 2788899999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH-HHHHHHHHC
Q 046930 75 DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN-ELFVRMESE 149 (965)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~ 149 (965)
+.+ |.+..++..++.+|...|++++|+..|++++... |.+..++..+..++...++.+++. ..|..+...
T Consensus 116 ~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 116 KID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HhC---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998 8899999999999999999999999999999976 677888889999888888888777 556666543
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.69 E-value=1.4e-07 Score=83.40 Aligned_cols=103 Identities=7% Similarity=-0.056 Sum_probs=93.9
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.+...|..++..+ ...|++++|+..|..++... +.+..++..++.++...|++++|+..|+.+++.+ |.++.
T Consensus 5 ~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~ 78 (137)
T 3q49_B 5 KSPSAQELKEQGNRL-FVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVK 78 (137)
T ss_dssp -CCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred ccccHHHHHHHHHHH-HHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHH
Confidence 356677888999887 89999999999999999876 4578899999999999999999999999999998 78999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
++..++.++...|++++|+..|++++...
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999764
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=2.4e-07 Score=84.89 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=94.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.+...+..++..+...|++++|+..|+++++.+ |.+..+|..++.+|...|++++|+..|++++..+ |.+...|.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 83 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 346678889999999999999999999999998 8899999999999999999999999999999987 77788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.++.++...|++++|+..|+++++..
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998864
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=2.4e-07 Score=88.66 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=111.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCCCHhhHHHHHHHHHhc
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA----LKPNVVSYTSLVIALCML 133 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 133 (965)
...|++++|.+.++.+.. ++ +....++..++.++...|++++|+..|++++.... .+....++..++.++...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-Ch--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 467888888886655543 32 46778889999999999999999999999886210 122345777888899999
Q ss_pred CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC
Q 046930 134 GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP--DTVSYTILLDGFSKEGTIEKAVGILNKMIEDR---LRP 208 (965)
Q Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~ 208 (965)
|++++|...+++.++.. ...+..+ ...++..+...+...|++++|...+++.+... ..+
T Consensus 80 g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 143 (203)
T 3gw4_A 80 GNWDAARRCFLEERELL----------------ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143 (203)
T ss_dssp TCHHHHHHHHHHHHHHH----------------HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHH----------------HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence 99999999999887631 0111111 24567788888999999999999998887531 111
Q ss_pred C--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 209 N--LITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 209 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
. ..++..+..++...|++++|...+++..+
T Consensus 144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 23356677777788888888887777654
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=1.5e-07 Score=79.64 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=56.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--CHhhHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP--NVVSYT 124 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 124 (965)
...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|+++++.. +. +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHH
Confidence 3444555555555666666666666655555 4555555666666666666666666666665543 33 455555
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHC
Q 046930 125 SLVIALCML-GRVNEVNELFVRMESE 149 (965)
Q Consensus 125 ~l~~~~~~~-~~~~~A~~~~~~~~~~ 149 (965)
.++.++... |++++|++.++++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 555556666 6666666666665544
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.67 E-value=2.4e-07 Score=88.70 Aligned_cols=164 Identities=12% Similarity=0.012 Sum_probs=122.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCCCchHHHHHHHHHHHhcC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV---KYPFDNFVCSSVVSGFCKIG 98 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g 98 (965)
...|++++|.+.++.+.. .+ .....++..++.++...|++++|+..|+++++... ..+....++..++.++...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-Ch-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 467999999996555432 21 24567889999999999999999999999888210 11566788999999999999
Q ss_pred ChhhHHHHHHHHHHcCC-CCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCC-
Q 046930 99 KPELAIGFFENAISLGA-LKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIK- 172 (965)
Q Consensus 99 ~~~~A~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 172 (965)
++++|+..|++++.... .+.+ ...+..++.++...|++++|...+++.+.... ..+..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~ 144 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ----------------QADDQV 144 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------------HTTCHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----------------hccchH
Confidence 99999999999987510 1112 34678899999999999999999999875311 11111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
.-..++..+..++...|++++|.+.|++.++
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1134567888999999999999999998875
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.65 E-value=2.8e-07 Score=77.92 Aligned_cols=102 Identities=9% Similarity=-0.085 Sum_probs=93.5
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--ch
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF--DN 84 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 84 (965)
|.+...|..++..+ ...|++++|+..|++++... +.+...+..++.++...|++++|+..|+++++.+ |. +.
T Consensus 3 p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~ 76 (112)
T 2kck_A 3 DQNPEEYYLEGVLQ-YDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNK 76 (112)
T ss_dssp CSSTTGGGGHHHHH-HSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCH
T ss_pred CCcHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchH
Confidence 66777888888887 89999999999999999876 4577889999999999999999999999999998 77 89
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHHHHHHcC
Q 046930 85 FVCSSVVSGFCKI-GKPELAIGFFENAISLG 114 (965)
Q Consensus 85 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 114 (965)
.++..++.++... |++++|++.|++++...
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999999999 99999999999999876
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=1.4e-07 Score=80.89 Aligned_cols=98 Identities=11% Similarity=-0.003 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..++.++..+ .+.|++++|+..|+.+++.. |.+..++..++.++...|++++|+..|+++++.+ |.+..++..+
T Consensus 18 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~l 91 (121)
T 1hxi_A 18 ENPMEEGLSM-LKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAAL 91 (121)
T ss_dssp SCHHHHHHHH-HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 3577777776 79999999999999999876 5678899999999999999999999999999999 8899999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.++...|++++|+..|+++++..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999754
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.64 E-value=2.4e-07 Score=81.02 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=77.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC----c-----hHHHHHHHHHHHhcCChhhHHHHHHHHHHc-----
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF----D-----NFVCSSVVSGFCKIGKPELAIGFFENAISL----- 113 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 113 (965)
..+...+..+.+.|++++|+..|+++++.++.+|. + ..+|+.++.++.+.|++++|+..|++++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44556666777777777777777777777632111 2 338899999999999999999999999987
Q ss_pred --CCCCCCHhhH----HHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 114 --GALKPNVVSY----TSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 114 --~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+ |.+..+| +..+.++...|++++|+..|+++++.
T Consensus 92 e~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6 5556688 88999999999999999999998875
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.62 E-value=2.4e-07 Score=81.02 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=91.0
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc----
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---- 83 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 83 (965)
..+..|..++..+ ...|+++.|+..|..++... +.+..++..++.++...|++++|+..|+.++...+..+.+
T Consensus 2 ~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 2 KQALKEKELGNDA-YKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 4456777888876 78899999999999988865 4567788888888999999999999999988876211111
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
..++..++.++...|++++|++.|++++... |+...+..+..+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 7788889999999999999999999998864 4666665555544
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.62 E-value=2.3e-07 Score=81.16 Aligned_cols=95 Identities=14% Similarity=0.005 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----
Q 046930 728 IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-------------KFTVSAVINGFCQKGDMEGALGFFLDFNTK---- 790 (965)
Q Consensus 728 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 790 (965)
.+...+..+.+.|++++|+..|+++++. .|+ ..+|..++.++...|++++|+..|+++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4455566666677777777777766653 443 238888888899999999999999988762
Q ss_pred -CCCCChHH-H----HHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 791 -GVSPDFLG-F----LYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 791 -~~~p~~~~-~----~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+.|+... | +.++.++...|++++|+..|+++++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23898765 8 8999999999999999999999998
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=5.4e-07 Score=80.85 Aligned_cols=115 Identities=13% Similarity=0.018 Sum_probs=91.7
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS---SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
|.+...+..++..+ ...|++++|+..|++++... +.+ ...+..++.++...|++++|+..|+.+++.+ |.+
T Consensus 25 ~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 98 (148)
T 2dba_A 25 ASSVEQLRKEGNEL-FKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGD 98 (148)
T ss_dssp CCCHHHHHHHHHHH-HTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCC
T ss_pred hHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccC
Confidence 45666788888876 78899999999999988644 222 6778888888899999999999999988887 677
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
..++..++.++...|++++|+..|++++... |.+...+..+..+
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 142 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 8888999999999999999999999998876 5556666555543
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1.2e-06 Score=78.60 Aligned_cols=102 Identities=15% Similarity=0.005 Sum_probs=92.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 120 (965)
+.+...+..++..+...|++++|+..|+.+++.+ |.+ ..++..++.+|...|++++|+..|++++... |.+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 99 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDV 99 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCH
Confidence 3467788899999999999999999999999987 555 8899999999999999999999999999876 6678
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 121 VSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..+..++.++...|++++|...|+++++..
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 899999999999999999999999998763
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.57 E-value=2.6e-07 Score=80.78 Aligned_cols=98 Identities=11% Similarity=0.153 Sum_probs=88.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC-------
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN------- 119 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------- 119 (965)
+..+..++..+...|++++|+..|+.+++.+ |.+..++..++.++...|++++|+..|++++... +.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHH
Confidence 4567888999999999999999999999988 7889999999999999999999999999999865 333
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 120 VVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
..++..++.++...|++++|...|+++.+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 678889999999999999999999999875
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=1.2e-06 Score=76.28 Aligned_cols=106 Identities=10% Similarity=-0.086 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---hHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---NFVC 87 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~ 87 (965)
.++.++..+ ...|++++|+..|..++...+..+. ..++..++.++...|++++|+..|+.+++.+ |.+ +.++
T Consensus 4 ~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~ 79 (129)
T 2xev_A 4 TAYNVAFDA-LKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGL 79 (129)
T ss_dssp CHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHH
Confidence 345566665 6888888888888888876532211 1567778888888888888888888888877 444 7778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
..++.++...|++++|+..|++++... |.+....
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 113 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQY--PGSDAAR 113 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCChHHH
Confidence 888888888888888888888888765 4444433
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.57 E-value=3.7e-07 Score=99.42 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=113.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-------------HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-------------SFTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
|.....|+.++..+ .+.|+++.|+..|++++...+..+. ..++..++.+|.+.|++++|+..|+++
T Consensus 265 ~~~a~~~~~~G~~~-~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 265 LEQAAIVKEKGTVY-FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34556788888887 7899999999999999986643221 578899999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHH-HHHHHHH
Q 046930 74 SDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNE-LFVRMES 148 (965)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~ 148 (965)
++.+ |.+..+|+.++.+|...|++++|+..|+++++.. |.+..++..+..++.+.++++++.. .+.+|..
T Consensus 344 l~~~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 344 LGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhcC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 8899999999999999999999999999999876 6677789999999999999888764 5555543
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.56 E-value=6.7e-08 Score=105.32 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=121.8
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---------------hHHHH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---------------NFVCS 88 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~ 88 (965)
.++++.|+..|+.++... +.....+..++..+.+.|++++|+..|+++++.. |.+ ..+|.
T Consensus 247 l~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL---EMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccCChHHHHHHHHHHHHHHH
Confidence 345566666665554432 2345678889999999999999999999999987 455 68999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++.+|.+.|++++|+..|++++..+ |.+..+|..++.+|...|++++|+..|+++++..+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P----------------- 382 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP----------------- 382 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Confidence 99999999999999999999999987 77889999999999999999999999999998642
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVG-ILNKMI 202 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 202 (965)
.+..++..+..++.+.++.+++.. .+..|.
T Consensus 383 ----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 ----QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888887764 445544
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=1.5e-06 Score=75.73 Aligned_cols=100 Identities=10% Similarity=0.062 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC---HhhHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN---VVSYTS 125 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ 125 (965)
.+..++..+...|++++|+..|+.+++.++..+....++..++.++...|++++|+..|++++... |.+ +.++..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 355678889999999999999999999884323333799999999999999999999999999876 445 677889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++.++...|++++|...|+++++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999998763
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.55 E-value=3.7e-07 Score=83.45 Aligned_cols=105 Identities=9% Similarity=-0.001 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHh--------CC--------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRN--------HG--------TLPSSFTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
...+...+..+ .+.|++++|+..|..++.. .+ .+....++..++.+|.+.|++++|+..++.+
T Consensus 11 a~~~~~~G~~~-~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNEL-FVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45777888887 7899999999999999986 11 1223467888999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH
Q 046930 74 SDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120 (965)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 120 (965)
++.+ |.++.+|..++.+|...|++++|+..|++++..+ |.+.
T Consensus 90 l~~~---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 90 LKRE---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp HHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred HhcC---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 9998 8889999999999999999999999999999876 4444
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.55 E-value=6.2e-08 Score=105.93 Aligned_cols=129 Identities=7% Similarity=-0.011 Sum_probs=107.2
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
....+..++..+ .+.|++++|+..|+++++.. +.+..++..++.+|.+.|++++|++.|+++++.+ |.+..++.
T Consensus 5 ~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~ 78 (477)
T 1wao_1 5 RAEELKTQANDY-FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYY 78 (477)
T ss_dssp HHTTSSSSSSST-TTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHH
T ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 334455556655 78999999999999999976 5578899999999999999999999999999998 88999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHH
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA--LCMLGRVNEVNELFVR 145 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 145 (965)
.++.+|...|++++|++.|+++++.. |.+..++..+..+ +.+.|++++|++.+++
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999976 5566677766666 8889999999999983
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.50 E-value=2e-07 Score=79.55 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=71.8
Q ss_pred ccCCchHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 23 KRNDPEKALLVLKDCLRNHG-TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
..|++++|+..|++++.... .+.+..++..++.+|...|++++|+..|+++++.+ |.++.++..++.++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHH
Confidence 35888999999999887421 13456678889999999999999999999999988 788899999999999999999
Q ss_pred hHHHHHHHHHHcC
Q 046930 102 LAIGFFENAISLG 114 (965)
Q Consensus 102 ~A~~~~~~~~~~~ 114 (965)
+|+..|++++...
T Consensus 79 ~A~~~~~~al~~~ 91 (117)
T 3k9i_A 79 QGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998875
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=1.2e-06 Score=80.00 Aligned_cols=99 Identities=9% Similarity=-0.015 Sum_probs=90.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhc------------------CCCCCCchHHHHHHHHHHHhcCChhhHHHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDE------------------NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFE 108 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 108 (965)
...+...+..+.+.|++++|+..|..++.. + |.+..+|..++.+|.+.|++++|+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD---RKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH---HTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH---HHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 456778899999999999999999999987 4 5667899999999999999999999999
Q ss_pred HHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 109 NAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+++..+ |.++.+|..++.++...|++++|+..|+++++..
T Consensus 88 ~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 88 EVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 999987 7788999999999999999999999999999864
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=7.3e-06 Score=89.32 Aligned_cols=198 Identities=10% Similarity=-0.066 Sum_probs=123.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccc----------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCC
Q 046930 628 VAALCREGYVNKALDLCAFAKNKGITVN----------------IVTYNTVIHSLCRQGCFVEAFRLFDSLERI-DMVPS 690 (965)
Q Consensus 628 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 690 (965)
+..+.+.|++++|++.|..+.+.....+ ..++..++..|...|++++|.+++..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445566777777777777665432211 123566778888888888888888777652 11111
Q ss_pred H----hhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--C--C
Q 046930 691 E----VSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKIN--C--L 757 (965)
Q Consensus 691 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~ 757 (965)
. .+.+.+...+...|++++|+++++..+.. +..+ ...++..++.+|...|++++|..+++++... + -
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 22333444455667888888888777642 2222 2456677888888888888888888776543 1 1
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 758 EPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 758 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
.|. ..++..++..|...|++++|..++++.+.. +..|.. ..+..++..+...|++++|...|.++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 121 246777788888888888888888876541 111221 22555666777788888888888777653
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.48 E-value=4.1e-06 Score=93.06 Aligned_cols=175 Identities=10% Similarity=0.030 Sum_probs=133.6
Q ss_pred HhcCC-hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 58 CSQGN-MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK----------PELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 58 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
.+.|. .++|++.++.++..+ |.+..+|+....++...|+ ++++++.+++++..+ |.+..+|+..
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR 113 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHR 113 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34444 457799999999999 8899999999999998888 899999999999887 7888899998
Q ss_pred HHHHHhcC--ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 046930 127 VIALCMLG--RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEG-TIEKAVGILNKMIE 203 (965)
Q Consensus 127 ~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 203 (965)
..++.+.+ +++++++.++++++.++ .+..+|+.-..++.+.| .++++++.++++++
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~---------------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADE---------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhcc---------------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 88888998 67999999999998653 67888888888888888 88999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 046930 204 DRLRPNLITYTAIIFGFCKK--------------GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD 260 (965)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 260 (965)
.++. |..+|+....++.+. +.++++++.+.+++... +.|...|+-+...+.+.++
T Consensus 173 ~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 173 RNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp TTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 7766 888888877776653 33455555555555544 3344455544444444333
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=2e-07 Score=101.81 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+..++..+.+.|++++|++.|+++++.+ |.+..++..++.+|.+.|++++|++.|+++++.+ |.+..++..++.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 3445566788999999999999999998 8889999999999999999999999999999986 6788899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDG--FSKEGTIEKAVGILN 199 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 199 (965)
|...|++++|++.|+++++..+ .+...+..+..+ +.+.|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p---------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKP---------------------HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST---------------------TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988642 234455555555 888899999999988
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=4.2e-07 Score=77.53 Aligned_cols=90 Identities=18% Similarity=0.101 Sum_probs=77.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhH
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE 138 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (965)
..|++++|+..|+++++.+...|.+..++..++.+|...|++++|+..|+++++.. |.++.++..++.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999842127888999999999999999999999999999987 7778899999999999999999
Q ss_pred HHHHHHHHHHCC
Q 046930 139 VNELFVRMESEG 150 (965)
Q Consensus 139 A~~~~~~~~~~~ 150 (965)
|+..|++++...
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=4.6e-06 Score=92.65 Aligned_cols=177 Identities=6% Similarity=-0.037 Sum_probs=149.2
Q ss_pred ccCCc-hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 23 KRNDP-EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGN----------MSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 23 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
+.|++ ++|+..+..++... |....+|..-..++...|+ ++++++.++.+++.+ |.+..+|+..+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 34444 57899999999876 4566778777777877777 999999999999999 89999999999
Q ss_pred HHHHhcC--ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 92 SGFCKIG--KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLG-RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 92 ~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
-++.+.| +++++++.++++++.+ +.+..+|+....++.+.| .++++++.+.++++.++
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p----------------- 175 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----------------- 175 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-----------------
T ss_pred HHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-----------------
Confidence 9999999 6699999999999988 889999999999999999 89999999999988653
Q ss_pred cCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 046930 169 KGIKPDTVSYTILLDGFSKE--------------GTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEE 228 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 228 (965)
.|..+|+....++.+. +.++++++.+++++...+. |..+|+-+...+.+.++.++
T Consensus 176 ----~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 176 ----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ----CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ----CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5788888888777663 5689999999999987655 78888888777777766443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.45 E-value=1e-06 Score=92.43 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCC--------------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHG--------------TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDE 76 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (965)
..|..++..+ .+.|++++|+..|++++...+ .+....++..++.+|.+.|++++|+..++++++.
T Consensus 224 ~~~~~~g~~~-~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTF-FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3577778876 799999999999999997210 1234678899999999999999999999999998
Q ss_pred CCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 046930 77 NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNE 141 (965)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 141 (965)
+ |.+..++..++.+|...|++++|+..|+++++.. |.+...+..+..++...++.+++..
T Consensus 303 ~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 D---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 8899999999999999999999999999999986 6677888888888888887777654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.43 E-value=4.3e-07 Score=94.38 Aligned_cols=135 Identities=9% Similarity=-0.020 Sum_probs=86.9
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH-----------------HhHHHHHHHHHhcCChhHHHHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS-----------------FTFCSLVYSFCSQGNMSRAVEVL 70 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~ 70 (965)
.....+..++..+ ...|++++|+..|++++...+ .+. .++..++.+|.+.|++++|+..|
T Consensus 177 ~~a~~~~~~g~~~-~~~g~~~~A~~~y~~Al~~~p--~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 177 GAADRRKMDGNSL-FKEEKLEEAMQQYEMAIAYMG--DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHT-CSSSCCHHHHHHHHHHHHHSC--HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhc--cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455677788776 799999999999999998652 222 27889999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHHC
Q 046930 71 ELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA-LCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~ 149 (965)
+++++.+ |.+..+|+.++.+|...|++++|+..|++++... |.+..++..+..+ ....+..+++...|.++...
T Consensus 254 ~~al~~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 254 NIVLTEE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999998 8899999999999999999999999999999865 5566677767665 34456778888999998865
Q ss_pred C
Q 046930 150 G 150 (965)
Q Consensus 150 ~ 150 (965)
.
T Consensus 329 ~ 329 (338)
T 2if4_A 329 K 329 (338)
T ss_dssp -
T ss_pred C
Confidence 3
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=1.9e-06 Score=90.42 Aligned_cols=123 Identities=11% Similarity=-0.021 Sum_probs=106.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh----------------cCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSD----------------ENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
..+..++..+.+.|++++|+..|+++++ .+ |.+..+|..++.+|.+.|++++|+..|++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ---PVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH---HHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4577889999999999999999999998 44 6778999999999999999999999999999
Q ss_pred HcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCH
Q 046930 112 SLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTI 191 (965)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 191 (965)
+.+ |.+..++..++.+|...|++++|+..|+++++..+ .+...+..+..++...++.
T Consensus 301 ~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P---------------------~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 301 EID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP---------------------EDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp TTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHHHH
T ss_pred HhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHH
Confidence 876 67888999999999999999999999999998642 3577777788777777777
Q ss_pred HHHHH
Q 046930 192 EKAVG 196 (965)
Q Consensus 192 ~~A~~ 196 (965)
+++.+
T Consensus 358 ~~a~k 362 (370)
T 1ihg_A 358 KDKEK 362 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.39 E-value=4.8e-07 Score=97.69 Aligned_cols=139 Identities=11% Similarity=-0.043 Sum_probs=106.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhC-----C-CCCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccc
Q 046930 770 GFCQKGDMEGALGFFLDFNTK-----G-VSPDFL-GFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESE 842 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (965)
.+...|++++|+.++++.++. | -.|+.. ++++|+.+|..+|++++|..+++++++..... ....+|+..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~----lG~~Hp~~a 393 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL----YHHNNAQLG 393 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----SCTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----cCCCCHHHH
Confidence 455789999999999887652 1 234443 38899999999999999999999999853221 222566544
Q ss_pred -cHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhccccccccccccccccCccccccccccc
Q 046930 843 -SVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHN 921 (965)
Q Consensus 843 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (965)
.+.+|+..|..+|++++|+.+|++. +..+++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~A------------------------------------------------l~i~~~ 425 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKA------------------------------------------------YAILLV 425 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH------------------------------------------------HHHHHH
Confidence 5777888899999999999999985 234555
Q ss_pred chhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhccc
Q 046930 922 VEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSF 961 (965)
Q Consensus 922 ~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~ 961 (965)
.+... ||+......++.. +...|++++|+.+|+++.+..
T Consensus 426 ~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 426 THGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 7877777777766 889999999999999987754
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.2e-05 Score=87.54 Aligned_cols=131 Identities=9% Similarity=0.010 Sum_probs=65.4
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCH---------------HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSS---------------FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYP 81 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 81 (965)
+..+ .+.|++++|++.|..+++..+...+. .++..++.+|...|++++|.+.+..+.......+
T Consensus 11 a~~l-~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRL-VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHH-HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHH-HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3444 56677777777777766644322211 1245566666666666666666665554321101
Q ss_pred C---chHHHHHHHHHHHhcCChhhHHHHHHHHHHcC----CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 82 F---DNFVCSSVVSGFCKIGKPELAIGFFENAISLG----ALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 82 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
. ...+...++..+...|++++|+.++++++... .......++..++..+...|++++|..+++++..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 1 11223334444445556666666665554321 0011123445555556666666666665555543
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.35 E-value=2.2e-06 Score=78.29 Aligned_cols=132 Identities=15% Similarity=0.127 Sum_probs=79.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----hh
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVLKGF-KPS----TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCL-EPD----KF 762 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 762 (965)
++..+...+...|++++|++.++++++..- .++ ..++..++.++...|++++|...++++..... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555555555555555543200 001 13556666677777777777777766554210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD-FLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
++..++.++...|++++|++.+++.++. +..+. ...+..++..+...|++++|...++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777777888888888887777542 21122 22377788888888999999988888876
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=1.1e-06 Score=91.22 Aligned_cols=131 Identities=12% Similarity=0.028 Sum_probs=71.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch-----------------HHHHHHHHHHHhcCChhhHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN-----------------FVCSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
..+..++..+.+.|++++|+..|++++... |.+. .++..++.+|.+.|++++|+..|+++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677777888888888888888888876 4444 26777777777777777777777777
Q ss_pred HHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHH-HHhcC
Q 046930 111 ISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDG-FSKEG 189 (965)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~~g 189 (965)
+..+ |.+..+|..++.+|...|++++|+..|+++++..+ .+..++..+... ....+
T Consensus 257 l~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p---------------------~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 257 LTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP---------------------DDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------------CCHHHHHHHHHHHHHHHH
Confidence 7765 55666777777777777777777777777765421 233444444443 22344
Q ss_pred CHHHHHHHHHHHHHC
Q 046930 190 TIEKAVGILNKMIED 204 (965)
Q Consensus 190 ~~~~A~~~~~~~~~~ 204 (965)
..+++...|..|...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 556666666666654
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.34 E-value=1e-06 Score=76.81 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=75.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCCh----------hhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKP----------ELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
.+.+.+++|++.++.+++.+ |.++.+|..++.++...+++ ++|+..|+++++.+ |.+..+|+.++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHH
Confidence 34567889999999999988 88899999999999988775 49999999999987 67788999999
Q ss_pred HHHHhcC-----------ChhHHHHHHHHHHHCC
Q 046930 128 IALCMLG-----------RVNEVNELFVRMESEG 150 (965)
Q Consensus 128 ~~~~~~~-----------~~~~A~~~~~~~~~~~ 150 (965)
.+|...| ++++|++.|+++++.+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 9998774 8999999999999863
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=2.4e-06 Score=77.97 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=108.9
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CC
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS----SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVK---YP 81 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 81 (965)
...++..++..+ ...|++++|+..|++++......++ ..++..++.++...|++++|...++.+++.... .+
T Consensus 8 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 8 QGRAFGNLGNTH-YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345777888876 7899999999999998875422122 246888999999999999999999998775311 12
Q ss_pred CchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 82 FDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 82 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
....++..++.++...|++++|+..|++++......++ ...+..++.++...|++++|...+++..+.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23567889999999999999999999999864211112 346778899999999999999999998763
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.28 E-value=1.8e-06 Score=75.38 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=81.2
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 23 KRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNM----------SRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
+-+.|++|++.++.++... |.++..+..++.++...+++ ++|+..|+++++.+ |.+..+|+.++.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHH
Confidence 3456899999999999987 56888999999999988875 49999999999999 899999999999
Q ss_pred HHHhcC-----------ChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 93 GFCKIG-----------KPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 93 ~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
+|...| ++++|++.|+++++.+ |+...|.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~---P~~~~y~ 128 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---PDNTHYL 128 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhC---CCCHHHH
Confidence 999875 8999999999999976 5544443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.27 E-value=6.4e-07 Score=75.55 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=69.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC------
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN------ 119 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 119 (965)
+...+..++..+...|++++|+..|+++++.+ |.++.++..++.++...|++++|+..|++++... |.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHH
Confidence 34566777777888888888888888888777 6777788888888888888888888888888754 333
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHH
Q 046930 120 VVSYTSLVIALCMLGRVNEVNELFVR 145 (965)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 145 (965)
...+..++.++...|++++|+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 55666677777777777666655543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.25 E-value=3e-06 Score=71.90 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHH
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFF 107 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 107 (965)
+.|+..|++++... +.+...+..++.++...|++++|+..|+++++.+ |.+..++..++.+|...|++++|+..|
T Consensus 2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45778888888755 4577888889999999999999999999999888 778889999999999999999999999
Q ss_pred HHHHHcC
Q 046930 108 ENAISLG 114 (965)
Q Consensus 108 ~~~~~~~ 114 (965)
++++...
T Consensus 77 ~~al~~~ 83 (115)
T 2kat_A 77 ESGLAAA 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988754
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.21 E-value=6.3e-06 Score=89.01 Aligned_cols=132 Identities=8% Similarity=-0.080 Sum_probs=95.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhC---CCCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CC-CCCChHH-HH
Q 046930 735 GYCKFGQLEEAFKFLHDLKIN---CLEP---D-KFTVSAVINGFCQKGDMEGALGFFLDFNT-----KG-VSPDFLG-FL 800 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~---~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~~~-~~ 800 (965)
.+..+|++++|+.++++.++. -+.| + ..++++|+.+|...|++++|+.+++++++ .| -.|+... ++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888776643 1223 2 24788888888888888888888888764 22 3455555 89
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHH-HHhhhcCcHHHHHHHHHHHhhc
Q 046930 801 YLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFL-ISLCEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 801 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~ 870 (965)
+|+..|..+|++++|..+|+++++..... .+..+|.......++ ..+.+.|++++|+.+|.++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~----lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVT----HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999843322 233566555444444 4566899999999999987543
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.17 E-value=1.2e-05 Score=64.53 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=61.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|++++... |.+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHH
Confidence 4566777777778888888888888887776 6677778888888888888888888888887765 5566677777
Q ss_pred HHHHHhc
Q 046930 127 VIALCML 133 (965)
Q Consensus 127 ~~~~~~~ 133 (965)
+.++...
T Consensus 84 ~~~~~~~ 90 (91)
T 1na3_A 84 GNAKQKQ 90 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7666544
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.13 E-value=1.3e-05 Score=67.84 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 046930 64 SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELF 143 (965)
Q Consensus 64 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 143 (965)
++|+..|+.+++.+ |.++.++..++.+|...|++++|+..|++++..+ |.+...|..++.++...|++++|...|
T Consensus 2 ~~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46889999999988 8899999999999999999999999999999987 677889999999999999999999999
Q ss_pred HHHHHC
Q 046930 144 VRMESE 149 (965)
Q Consensus 144 ~~~~~~ 149 (965)
+++++.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.12 E-value=6.9e-06 Score=67.28 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=62.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
|.++.++..++.+|...|++++|+..|+++++.+ |.++.+|..++.+|...|++++|++.|+++++..+-.++....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 4567778888888888888888888888888888 6777888888888888888888888888888643112344443
Q ss_pred HHHHHHH
Q 046930 124 TSLVIAL 130 (965)
Q Consensus 124 ~~l~~~~ 130 (965)
..+...+
T Consensus 81 ~~l~~~l 87 (100)
T 3ma5_A 81 SELQDAK 87 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=4.5e-06 Score=70.21 Aligned_cols=96 Identities=6% Similarity=0.029 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc-----
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD----- 83 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 83 (965)
+...|..++..+ ...|++++|+..|++++... +.++.++..++.++...|++++|+..|+++++.+ |.+
T Consensus 3 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSL-FKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT---STAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SSTTSHHH
T ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCccHHHH
Confidence 456788888887 89999999999999999876 5678889999999999999999999999999998 666
Q ss_pred -hHHHHHHHHHHHhcCChhhHHHHHHHH
Q 046930 84 -NFVCSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 84 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
..++..++.++...|+++.|+..|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 788999999999999999888777654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.07 E-value=2.6e-05 Score=62.45 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=76.0
Q ss_pred ccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch
Q 046930 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN 84 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (965)
+.|.+...|..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|+..|+++++.+ |.+.
T Consensus 4 ~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~ 77 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAY-YKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNA 77 (91)
T ss_dssp --CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred cccccHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCH
Confidence 3455667888888887 89999999999999999876 4577889999999999999999999999999998 7889
Q ss_pred HHHHHHHHHHHhcC
Q 046930 85 FVCSSVVSGFCKIG 98 (965)
Q Consensus 85 ~~~~~l~~~~~~~g 98 (965)
.++..++.++...|
T Consensus 78 ~~~~~l~~~~~~~g 91 (91)
T 1na3_A 78 EAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887654
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.05 E-value=7.7e-05 Score=65.26 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=96.1
Q ss_pred CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh----cCCh
Q 046930 25 NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK----IGKP 100 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 100 (965)
+++++|+..|+++.+.. .+... ++..|...+.+++|++.|+++.+.+ ++.+++.++.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccH
Confidence 46889999999988743 33333 8888888889999999999999875 56889999999998 8999
Q ss_pred hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 046930 101 ELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEG 150 (965)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 150 (965)
++|+.+|+++.+. .++.++..++.+|.. .+++++|..+|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999999999984 478899999999999 899999999999998864
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.01 E-value=0.00011 Score=64.24 Aligned_cols=111 Identities=11% Similarity=-0.015 Sum_probs=75.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCCh
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRV 136 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 136 (965)
+++++|++.|+++.+.+. +.. . ++..|...+.+++|+++|+++.+. .++.++..++..|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~---~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE---MFG--C--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTH--H--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCC---Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccH
Confidence 356777777777777662 222 2 677777777777777777777763 366677777777776 6777
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 205 (965)
++|+.+|++..+. .++.++..|...|.. .+++++|...|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~-----------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGL-----------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-----------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777777653 356666667777766 677777777777777654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=5.1e-05 Score=62.02 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=62.0
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
|.++.++..++.+|...|++++|+..|+++++.+ |.+..+|..++.+|...|++++|+..|+++++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999999987 677889999999999999999999999998864
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.84 E-value=1.2e-05 Score=85.23 Aligned_cols=101 Identities=11% Similarity=-0.004 Sum_probs=80.9
Q ss_pred cCCCHHHHHHHHHHHHhcCcchhhhhcccccccc-ccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhh
Q 046930 808 TKGRMEEARSILREMLQSKSVLELINRVDIEVES-ESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQ 886 (965)
Q Consensus 808 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (965)
..|++++|..+++++++..... ....+|.. .++.+|+..|..+|+|++|+.++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~----lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a------------------- 366 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSV----FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI------------------- 366 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTT----BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCc----cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-------------------
Confidence 4689999999999999853322 12245543 35777888899999999999999985
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhccc
Q 046930 887 NKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSF 961 (965)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~ 961 (965)
+..+++++... +|+....++.++. |..+|+|++|+.+|++++++.
T Consensus 367 -----------------------------L~i~~~~lG~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 367 -----------------------------IKPYSKHYPVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp -----------------------------HHHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHcCCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 23556677777 9999999988888 999999999999999999864
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.68 E-value=5.9e-05 Score=80.24 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=83.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccc-cccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchh
Q 046930 802 LVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVE-SESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTD 880 (965)
Q Consensus 802 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 880 (965)
.+..+..+|++++|+.+++++++..... ....+|. ..++.+|+..|...|+|++|+.++++++
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~----lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L------------ 356 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSER----LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM------------ 356 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCC----CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCc----CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH------------
Confidence 3455668999999999999999864422 1123443 3356778888999999999999999852
Q ss_pred hhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhc
Q 046930 881 RAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLS 959 (965)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~ 959 (965)
..+++++... +|+....+..++. |..+|++++|+.+|+++++
T Consensus 357 ------------------------------------~i~~~~lg~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 357 ------------------------------------EPYRIFFPGS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------------------------------------HHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------HhHHHHcCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3556667677 8999888888888 9999999999999999987
Q ss_pred cc
Q 046930 960 SF 961 (965)
Q Consensus 960 ~~ 961 (965)
..
T Consensus 400 i~ 401 (429)
T 3qwp_A 400 IM 401 (429)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.67 E-value=0.0018 Score=65.36 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVY 248 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 248 (965)
.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|+++...+ |...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 456666666666666677777777777777764 566666666777777777777777777777663 344444
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=0.00042 Score=56.30 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=62.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF-VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
..+..+...|++++|+..|+.+++.+ |.+.. ++..++.+|...|++++|++.|+++++.+ |.+..++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH-----
Confidence 45667788888889999888888887 67777 88888888888899999999998888876 444444422
Q ss_pred HhcCChhHHHHHHHHHHH
Q 046930 131 CMLGRVNEVNELFVRMES 148 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~ 148 (965)
+.+.++...|++...
T Consensus 75 ---~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMY 89 (99)
T ss_dssp ---HHHHHHHHHHCCTTH
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 345555666655443
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.55 E-value=0.00082 Score=53.28 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=53.1
Q ss_pred CCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 44 LPSSFTFCSLVYSFCSQGN---MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.++..+..++.++...++ .++|...|+++++.+ |.++.++..++..+...|+|++|+..|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777765544 678888888888888 7788888888888888888888888888888765
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.53 E-value=0.0014 Score=66.07 Aligned_cols=139 Identities=12% Similarity=0.082 Sum_probs=99.6
Q ss_pred ccccchhhHHHHHHHHH-Hcc---CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCCh-----hHHHHHHHH
Q 046930 5 SFPHQSRFFDSLIQGFC-IKR---NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS---QGNM-----SRAVEVLEL 72 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~-~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~-----~~A~~~~~~ 72 (965)
..|.+..+|...+++.. ... .+..+|+.+|++++..+ |....++..++-+|.. .+.+ ......+..
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45778888888876553 222 33478999999999987 3445555544444431 1111 111112222
Q ss_pred H--HhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 73 M--SDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 73 ~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
. ...+ |.++.++..++..+...|++++|+..+++++..+ |+...|..++.++.-.|++++|.+.|+++...+
T Consensus 267 ~~a~~~~---~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPEL---NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGG---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccC---CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1 1233 7888999999998988999999999999999975 678888889999999999999999999999875
Q ss_pred C
Q 046930 151 L 151 (965)
Q Consensus 151 ~ 151 (965)
|
T Consensus 341 P 341 (372)
T 3ly7_A 341 P 341 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.51 E-value=0.00045 Score=73.24 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHHHhhhC---CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CC-CCCChHH-HHHHH
Q 046930 738 KFGQLEEAFKFLHDLKIN---CLEPD----KFTVSAVINGFCQKGDMEGALGFFLDFNT-----KG-VSPDFLG-FLYLV 803 (965)
Q Consensus 738 ~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~~~-~~~l~ 803 (965)
..|++++|+.++++.++. -+.|+ ..++++|+.+|...|++++|+.+++++++ .| -.|+..+ +++|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888876642 12332 25788888899889999999988888765 23 3566555 99999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhc
Q 046930 804 KGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 804 ~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
..|..+|++++|..+|+++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999984
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.43 E-value=0.0019 Score=51.09 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=63.2
Q ss_pred CCchHHHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 81 PFDNFVCSSVVSGFCKIGK---PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
|.++..+..++.++...++ .++|...|+++++.+ |.++.+...++..+.+.|++++|+..|+++++..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8899999999999976665 799999999999988 88899999999999999999999999999998754
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.41 E-value=0.00023 Score=57.95 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=68.9
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 046930 15 SLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSF-TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSG 93 (965)
Q Consensus 15 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (965)
..+..+ ...|++++|+..|++++... +.+.. .+..++.++...|++++|+..|+++++.+ |.+..++..
T Consensus 5 ~~a~~~-~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~---- 74 (99)
T 2kc7_A 5 KTIKEL-INQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN---PDSPALQAR---- 74 (99)
T ss_dssp HHHHHH-HHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSTHHHHH----
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHH----
Confidence 345555 68899999999999999876 45677 89999999999999999999999999998 677776633
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 046930 94 FCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~ 113 (965)
+.+.+|+..|+++...
T Consensus 75 ----~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 ----KMVMDILNFYNKDMYN 90 (99)
T ss_dssp ----HHHHHHHHHHCCTTHH
T ss_pred ----HHHHHHHHHHHHHhcc
Confidence 5566777777776654
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.41 E-value=0.00097 Score=70.87 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=70.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC---CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC-----C-CCCChHH-
Q 046930 733 IDGYCKFGQLEEAFKFLHDLKINC---LEPD----KFTVSAVINGFCQKGDMEGALGFFLDFNTK-----G-VSPDFLG- 798 (965)
Q Consensus 733 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~- 798 (965)
+.-+...|++++|+.+++++++.. +.|+ ..++++|+.+|...|++++|+.+++++++. | -.|+..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556788888888888877541 2232 246788888888889999998888887642 2 3455555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 799 FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 799 ~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
+++|+..|..+|++++|..+|+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999984
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.23 E-value=0.019 Score=55.31 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHhhhCCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHHhHhCCCCCC--hHHHHHHHHHHhc-C
Q 046930 741 QLEEAFKFLHDLKINCLEPD---KFTVSAVINGFCQK-----GDMEGALGFFLDFNTKGVSPD--FLGFLYLVKGLCT-K 809 (965)
Q Consensus 741 ~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~-~ 809 (965)
...+|..+++++++ +.|+ ...|..|+..|... |+.++|.+.|+++++ +.|+ ..++...+..+++ .
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhc
Confidence 35788999999998 5886 46899999999884 999999999999977 7774 5668889999988 5
Q ss_pred CCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 810 GRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 810 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
|+.++|...++++++. .|....-..+. ..++-++|..+++++
T Consensus 254 gd~~~a~~~L~kAL~a------------~p~~~P~~~la----n~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 254 NNRAGFDEALDRALAI------------DPESVPHNKLL----VILSQKRARWLKAHV 295 (301)
T ss_dssp TCHHHHHHHHHHHHHC------------CGGGCSSCHHH----HHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHcC------------CCCCCCChhHH----HHHHHHHHHHHHHHh
Confidence 9999999999999984 33321111222 345667777777654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.22 E-value=0.0025 Score=54.87 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHhcCChhh
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG---NMSRAVEVLELMSDENVKYP-FDNFVCSSVVSGFCKIGKPEL 102 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 102 (965)
...+.+.|.+.+... +++..+...++-++.+.+ ++++++.+|+...+.+. | .+.++++.++-++.+.|+|++
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~--p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--ccchHHHHHHHHHHHHHccCHHH
Confidence 455677788776644 478888889998999988 67799999999999872 3 468899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHhhH
Q 046930 103 AIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~ 123 (965)
|+++++++++.. |.+..+.
T Consensus 90 A~~y~~~lL~ie--P~n~QA~ 108 (152)
T 1pc2_A 90 ALKYVRGLLQTE--PQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHhcC--CCCHHHH
Confidence 999999999976 4454443
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.21 E-value=0.0028 Score=54.51 Aligned_cols=82 Identities=21% Similarity=0.143 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHhHhCCCCC-C-hHHHHHHHHHHhcCCCHHHH
Q 046930 741 QLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKG---DMEGALGFFLDFNTKGVSP-D-FLGFLYLVKGLCTKGRMEEA 815 (965)
Q Consensus 741 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~eA 815 (965)
.+..+.+.|.+....| .++..+...+++++++.+ ++++++.++++..+.+ .| + ...++.|+.++++.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3466777787777655 467888888999999888 6779999999987743 36 2 34477899999999999999
Q ss_pred HHHHHHHHh
Q 046930 816 RSILREMLQ 824 (965)
Q Consensus 816 ~~~~~~~~~ 824 (965)
.++++++++
T Consensus 91 ~~y~~~lL~ 99 (152)
T 1pc2_A 91 LKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999998
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.16 E-value=0.0025 Score=52.07 Aligned_cols=78 Identities=8% Similarity=-0.084 Sum_probs=54.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV----KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 120 (965)
.++..+..++..+...|++..|+..|+.+++... ..+....++..++.++.+.|+++.|+..++++++.. |.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCH
Confidence 3556677777777777888888888877766421 014566778888888888888888888888888765 4454
Q ss_pred hhHH
Q 046930 121 VSYT 124 (965)
Q Consensus 121 ~~~~ 124 (965)
.+..
T Consensus 81 ~~~~ 84 (104)
T 2v5f_A 81 RANG 84 (104)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.91 E-value=0.0046 Score=50.44 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=66.5
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHG-----TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF 82 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (965)
.+..-|+.|+..+ .+.|+|..|+..|+.+++... -.+...++..++.++.+.|+++.|+..++.+++.. |.
T Consensus 3 Lsa~dc~~lG~~~-~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~---P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVA-YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD---PE 78 (104)
T ss_dssp CCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT
T ss_pred CCHHHHHHHHHHH-HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CC
Confidence 4566788899987 799999999999999997531 13456788999999999999999999999999998 77
Q ss_pred chHHHHHHH
Q 046930 83 DNFVCSSVV 91 (965)
Q Consensus 83 ~~~~~~~l~ 91 (965)
+..+...+.
T Consensus 79 ~~~~~~n~~ 87 (104)
T 2v5f_A 79 HQRANGNLK 87 (104)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhhHH
Confidence 777765554
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.91 E-value=0.058 Score=52.01 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CCHhH
Q 046930 191 IEKAVGILNKMIEDRLRP-NLITYTAIIFGFCKK-----GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR-GDLDC 263 (965)
Q Consensus 191 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 263 (965)
...|...++++++..+.- +...|..++..|.+. |+.++|.+.|++.++.+...+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 567888888888863321 256888999999985 99999999999999987444577888888888884 99999
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHH
Q 046930 264 AFRLLEDMEKKGIK--PSIVTYNTI 286 (965)
Q Consensus 264 A~~~~~~~~~~g~~--~~~~~~~~l 286 (965)
+.+.+++.+..... |+....+.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999998766 665544443
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.80 E-value=0.019 Score=48.39 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=82.9
Q ss_pred cccchhhHHHHHHHHHHccCCc------hHHHHHHHHHHHhCCCCCCHH--------hHHHHHHHHHhcCChhHHHHHHH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDP------EKALLVLKDCLRNHGTLPSSF--------TFCSLVYSFCSQGNMSRAVEVLE 71 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~ 71 (965)
-|++...|...+... .++|++ +.-+..|.+++... ||+.. .|...+ .+...++.++|.++|+
T Consensus 9 ~p~~yd~W~~yl~ll-E~~g~p~~d~~l~rlrd~YerAia~~--Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 9 MANNPEDWLSLLLKL-EKNSVPLSDALLNKLIGRYSQAIEAL--PPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQ 84 (161)
T ss_dssp -CCSHHHHHHHHHHH-HHHTCSCCHHHHHHHHHHHHHHHHHS--CGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHH
T ss_pred CCCCHHHHHHHHHHH-HHcCCCchhhHHHHHHHHHHHHHHcC--CccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHH
Confidence 378888999999887 677999 88888999988855 45321 122222 1234578899999999
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 72 LMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.++..+. .-+.+|...++.-.++|+...|.+++.+++..+ +.........++
T Consensus 85 ~a~~~hK---kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~--~k~~~~le~a~~ 136 (161)
T 4h7y_A 85 MARANCK---KFAFVHISFAQFELSQGNVKKSKQLLQKAVERG--AVPLEMLEIALR 136 (161)
T ss_dssp HHHHHCT---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBCHHHHHHHHH
T ss_pred HHHHHhH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--CCcHHHHHHHHH
Confidence 8887753 348888888888889999999999999998865 445555554444
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.79 E-value=1.2 Score=51.24 Aligned_cols=126 Identities=14% Similarity=0.030 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHH--HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 046930 626 TIVAALCREGYVNKALDLCAFAKNKGITVNIV--TYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCK 703 (965)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 703 (965)
+++-++...|+.+.+..+.+.+... ..|... .-..++-+|+..|+......++..+.+.. ..+..-...+.-++..
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhc
Confidence 3344444566666666666666543 121221 11234455666677655555666666531 1222222222233334
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHhhh
Q 046930 704 EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQL-EEAFKFLHDLKI 754 (965)
Q Consensus 704 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 754 (965)
.|+.+.+..+++.+.+.+ .|.+..--.++-+....|.. .+|+..+..+..
T Consensus 607 ~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 555555555555554432 33333323333333333332 566777777764
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.74 E-value=1.5e-05 Score=81.08 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=182.5
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
+.+.+|..|+.+. .+.++..+|+..|-+ ..|+..|..++.+..+.|++++-++.+..+.+.- ..+.+=
T Consensus 52 n~p~VWs~LgkAq-L~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----ke~~ID 119 (624)
T 3lvg_A 52 NEPAVWSQLAKAQ-LQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVE 119 (624)
T ss_dssp CCCCCSSSHHHHT-TTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----CSTTTT
T ss_pred CCccHHHHHHHHH-HccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccH
Confidence 4556888888887 788888888765544 3456677788999999999999999998777653 344566
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh----
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC---- 163 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~---- 163 (965)
+.++-+|.+.++..+-.+++. .||..-...++.-|...|.++.|.-+|..+....- ..+++++
T Consensus 120 teLi~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak-----LAstLV~L~~y 186 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR-----LASTLVHLGEY 186 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT-----TSSSSSSCSGG
T ss_pred HHHHHHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH-----HHHHHHHHHHH
Confidence 788999999999877544432 46766677788888888999888888765532211 0111111
Q ss_pred -hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 046930 164 -GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV 242 (965)
Q Consensus 164 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 242 (965)
+.+.......++.+|-.+-.+|...+.+.-|.-+--.++-. | .....++..|-..|-+++-+.+++.-.... .
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 11222233456778888888888888887776665555432 1 223445666778888888888888776432 4
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCcchHHHH-------------
Q 046930 243 ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK-GIKP------SIVTYNTIINGLCKVGRTSDAEEV------------- 302 (965)
Q Consensus 243 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~------~~~~~~~l~~~~~~~g~~~~a~~~------------- 302 (965)
.....++.|.-.|++- ++++..+.++...++ +++- ....|..++-.|.+-.+++.|...
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 4566777777777663 455444444333222 1111 223577777777777777777554
Q ss_pred HcCC---CCCHHHHHHHHHHhhhc
Q 046930 303 SKGI---LGDVVTYSTLLHGYIEE 323 (965)
Q Consensus 303 ~~~~---~~~~~~~~~l~~~~~~~ 323 (965)
|+.+ ..|...+...+..|...
T Consensus 340 Fkdii~KVaN~EiyYKAi~FYL~e 363 (624)
T 3lvg_A 340 FKDIITKVANVELYYRAIQFYLEF 363 (624)
T ss_dssp GTTTGGGCSCSHHHHHHHHHHTTS
T ss_pred HHHHHHHcchHHHHHHHHHHHHHh
Confidence 2222 24555666666666543
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.54 E-value=0.11 Score=61.48 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=25.1
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHH
Q 046930 667 CRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRM 717 (965)
Q Consensus 667 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (965)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.++|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4456666665554322 23455666666666666666666666654
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.043 Score=64.98 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=97.3
Q ss_pred HHhcCCHHHHHH-HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHH
Q 046930 631 LCREGYVNKALD-LCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709 (965)
Q Consensus 631 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 709 (965)
....+++++|.+ ++.. ++ +......++..+.+.|..++|+++.+. |. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHH
Confidence 345678888866 4421 11 122336777888888998888876632 11 11223457899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 710 AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 710 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
|.++.+.+ .+...|..++..+.+.|+++.|+..|.++.. |..+...+...|+.+...++.+.+..
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99986532 4678999999999999999999999998753 23344445556666665555554443
Q ss_pred CCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 790 KGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 790 ~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.| + +..-..++...|++++|+++|.++.+
T Consensus 736 ~~---~---~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 736 TG---K---FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp TT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred cC---c---hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 22 1 12222235556777777776655543
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.18 E-value=0.033 Score=45.96 Aligned_cols=84 Identities=19% Similarity=0.105 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHHhHhCCCCCC-h-HHHHHHHHHHhcCCCHH
Q 046930 739 FGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEG---ALGFFLDFNTKGVSPD-F-LGFLYLVKGLCTKGRME 813 (965)
Q Consensus 739 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~ 813 (965)
...+..+.+.|.+....| .|+..+--.+++++.+..+..+ ++.+++.+...+ .|+ . ...+.|+.++++.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334556666777666544 4777777778888888876665 899999886532 352 2 23777999999999999
Q ss_pred HHHHHHHHHHh
Q 046930 814 EARSILREMLQ 824 (965)
Q Consensus 814 eA~~~~~~~~~ 824 (965)
+|..+++.+++
T Consensus 92 ~A~~~~~~lL~ 102 (126)
T 1nzn_A 92 KALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.01 E-value=0.061 Score=44.37 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=72.1
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH---HHHHHHHHHhcCCCCC-CchHHHHHHHHHHHhcCChh
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSR---AVEVLELMSDENVKYP-FDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 101 (965)
....+.+.|....... +++..+-..++-++.+..+... ++.+++.....+. | ...+.++.++-++.+.|+|+
T Consensus 16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHhhhHH
Confidence 4456677777766644 4788888888888888887666 9999999888762 3 57788899999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhH
Q 046930 102 LAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+|++.++.+++.. |.+..+.
T Consensus 92 ~A~~~~~~lL~~e--P~n~QA~ 111 (126)
T 1nzn_A 92 KALKYVRGLLQTE--PQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHH
Confidence 9999999999976 5555443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.93 E-value=0.11 Score=43.90 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=77.9
Q ss_pred CCCHHhHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCCCCchHH-------HHHHHHHHHhcCChhhHHHHHHHH
Q 046930 44 LPSSFTFCSLVYSFCSQGNM------SRAVEVLELMSDENVKYPFDNFV-------CSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
+.++.+|-..+...-+.|+. ++.+++|+++...-+ |..... |...+ .+...++.++|.+.|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--p~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--PDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--GGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--ccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 45666777777777777887 788889998888663 322222 22222 224458999999999999
Q ss_pred HHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccch
Q 046930 111 ISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155 (965)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (965)
++.. ..=...|...++.-.+.|+..+|.+++.+.+..++.|..
T Consensus 87 ~~~h--KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANC--KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHC--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHh--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 8763 333678888888889999999999999999998775543
No 233
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.039 Score=47.80 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-------SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYP--- 81 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 81 (965)
.+...+..+ ...|.|+.|+-+...++...+..++ ..++..++.++...|+|.+|...|+++++.....+
T Consensus 22 ~l~dqik~L-~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 22 NVIDHVRDM-AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566667776 7899999999888876654332333 23678889999999999999999999765321111
Q ss_pred -------------------CchHHHHHHHHHHHhcCChhhHHHHHHHH
Q 046930 82 -------------------FDNFVCSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 82 -------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
.+.++-+.++.+|.+.|++++|+..++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 12245555666666666666666666554
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.64 E-value=3.3 Score=45.81 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 046930 325 NVNGILETKQRLEEAGIQMDIVMCN----ILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEAL 400 (965)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 400 (965)
+.+.|...+....... ..+..... .++..+...+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666665433 22322222 22222233442345555555544332 33333333444455778888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 401 EIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE 442 (965)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (965)
..|..+............-+++++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888877664444566677778888888888888888888864
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.62 E-value=3.5e-05 Score=78.47 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046930 174 DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLID 253 (965)
Q Consensus 174 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 253 (965)
.+.+|..|+.+..+.++..+|++.|-+.. |+..|..++.+..+.|.+++-+..+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 46678889999888888888877664432 56678888888889999999888887777653 34455567888
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCC-------------------------C
Q 046930 254 GVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGIL-------------------------G 308 (965)
Q Consensus 254 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------------------~ 308 (965)
+|++.++..+-++.+ . .|+......++.-|...|.++.|.-+|..++ .
T Consensus 125 ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899988876543332 2 2555566677888888888888877654332 3
Q ss_pred CHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHH
Q 046930 309 DVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMID 388 (965)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (965)
++.+|..+-.+|...+.+.-|.-+--.++-. +| -...++..|-..|.+++-+.+++.-.... ......++.|+-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 5667777777777777766554432222211 11 01123444566777777777776665322 345566777776
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-CCC-------CHHHHHHHHHHHHhcCChHHHH
Q 046930 389 GYCKLGRIEEALEIFDELRRM-SIS-------SVACYNCIINGLCKSGMVDMAT 434 (965)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~-~~~-------~~~~~~~l~~~~~~~g~~~~A~ 434 (965)
.|.+-. .++-.+.++..-+. +.| ....|..+...|.+-.+++.|.
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 666542 33333332221111 111 2234667777777777776654
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.46 Score=42.05 Aligned_cols=101 Identities=8% Similarity=0.131 Sum_probs=72.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
....|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+.. |
T Consensus 15 AL~lg~l~~A~e~a~~l--------------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D 62 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--------------------------NDSITWERLIQEALAQGNASLAEMIYQTQH------S 62 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C
T ss_pred HHhcCCHHHHHHHHHHh--------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C
Confidence 45688888888887655 367788999999999999999999888874 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 210 LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
+..+.-.|.-.|+.+.-.++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 63 ---~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 63 ---FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3445555666788877776666666554 2344445566678888888887543
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.14 E-value=1.6 Score=38.59 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=24.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 046930 632 CREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSL 682 (965)
Q Consensus 632 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 682 (965)
.+.|+++.|.++.+.+ .+...|..|+......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555555554443 14455555555555555555555555543
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.74 E-value=0.11 Score=44.98 Aligned_cols=101 Identities=11% Similarity=0.045 Sum_probs=74.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC------chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC------
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF------DNFVCSSVVSGFCKIGKPELAIGFFENAISLGA------ 115 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 115 (965)
.++..-++.+...|.|+.|+-+.+.++......|. ...++..+++++...|+|..|...|++++....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34666677788999999999999986664311011 124778899999999999999999999864311
Q ss_pred -----------------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 116 -----------------LKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 116 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.+.+...-..+..+|.+.+++++|+.+++.+..
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111224667788999999999999999887643
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.99 E-value=0.83 Score=37.60 Aligned_cols=85 Identities=16% Similarity=0.036 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHH
Q 046930 187 KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFR 266 (965)
Q Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 266 (965)
..|+.......+-.+- .+.......+..+..+|+.+.-.+++..+... .+|++.....+..+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 3566666666665542 24556667778888888888888888886553 37788888888899999999999999
Q ss_pred HHHHHHHCCCC
Q 046930 267 LLEDMEKKGIK 277 (965)
Q Consensus 267 ~~~~~~~~g~~ 277 (965)
++.+.-++|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99988888764
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.78 E-value=2.8 Score=44.45 Aligned_cols=97 Identities=18% Similarity=0.090 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHh----CCCCCChHH-
Q 046930 729 YNSFIDGYCKFGQLEEAFKFLHDLKIN--CLEPD---KFTVSAVINGFCQKGDMEGALGFFLDFNT----KGVSPDFLG- 798 (965)
Q Consensus 729 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~- 798 (965)
...|+..+...|++.+|..++..+... |..+. ...+..-+..|...+++.+|..+++++.. ....|+...
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356777888888888888888776532 21111 13555667777788888888888777632 122233222
Q ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 799 -FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 799 -~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
+...+..+...+++.+|...|.++.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455666677788888888888777664
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.39 E-value=1.6 Score=36.68 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC
Q 046930 43 TLPSSFTFCSLVYSFCSQGN---MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119 (965)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 119 (965)
..++..+...++-++.++.+ ..+++.+++.....++ ....+.++.++-++.+.|+|++|+++.+.+++.. |.|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e--P~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--CCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc
Confidence 36788888888888888765 4578999999888764 4677888999999999999999999999999966 445
Q ss_pred Hh
Q 046930 120 VV 121 (965)
Q Consensus 120 ~~ 121 (965)
..
T Consensus 111 ~Q 112 (144)
T 1y8m_A 111 KQ 112 (144)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.87 E-value=0.68 Score=38.33 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCCChhHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCC--hHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 757 LEPDKFTVSAVINGFCQKGD---MEGALGFFLDFNTKGVSPD--FLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 757 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
-.|+..+--.+++++.+..+ ..+++.+++++... .|. ...++.|+.++++.|++++|.++.+.+++
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 36666666677778876654 45688888888653 353 23377799999999999999999999998
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.58 E-value=2.2 Score=35.87 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=49.2
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCC-h-HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 758 EPDKFTVSAVINGFCQKGD---MEGALGFFLDFNTKGVSPD-F-LGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 758 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.|+..+--.+++++.+..+ ..+++.+++.+.. -.|+ . ..++.|+.++++.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5666666677788877654 4578888888865 2443 2 3366799999999999999999999998
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.21 E-value=1.4 Score=36.45 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=60.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC
Q 046930 43 TLPSSFTFCSLVYSFCSQGNM---SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119 (965)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 119 (965)
-.|++.+-..++-++.++.+. .+++.+++.+.+.++ ....+.++.++-++.+.|+|++|+++.+.+++.. |.|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~--~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e--P~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--TTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--CCC
Confidence 357778888888788877654 578999999888763 3567889999999999999999999999999865 445
Q ss_pred Hhh
Q 046930 120 VVS 122 (965)
Q Consensus 120 ~~~ 122 (965)
..+
T Consensus 112 ~QA 114 (134)
T 3o48_A 112 KQV 114 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.00 E-value=10 Score=40.14 Aligned_cols=164 Identities=10% Similarity=0.027 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--CCccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----CCCCCC--Hh
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNK--GITVN---IVTYNTVIHSLCRQGCFVEAFRLFDSLER----IDMVPS--EV 692 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--~~ 692 (965)
...|+..+...|++.+|..++..+... +.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356777888888888888888887643 21111 23455667888888999999888887642 222222 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHH
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYN----SFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAV 767 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 767 (965)
.+...+..+...+++.+|.+.|.++... ....+...+. .++.+..-.+...+--.+..+......-++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 4556667777888888888888877653 1111222221 1111111122111222222222221112345677778
Q ss_pred HHHHHhc--CCHHHHHHHHHHh
Q 046930 768 INGFCQK--GDMEGALGFFLDF 787 (965)
Q Consensus 768 ~~~~~~~--g~~~~A~~~~~~~ 787 (965)
+.+|... .+++...+.|...
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHhchHhhhHHHHHHHHHH
Confidence 8887543 4567777766654
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.68 E-value=5 Score=33.17 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM 687 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 687 (965)
....++.+...|+-|+-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455666667777777777665432 355666667777777777777777777777777664
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.31 E-value=4.6 Score=41.49 Aligned_cols=132 Identities=11% Similarity=0.009 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-Ccc---cHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhCCCCCCHhhH-
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKG-ITV---NIVTYNTVIHSLCRQ-GCFVEAFRLFDSLERIDMVPSEVSY- 694 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~- 694 (965)
..+...|+..|.+.|+.++..+++.....-= .-| .....+.++..+... +..+.-.++..+.++..- ....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3455667777777777777777766554320 000 112234455555442 223333333333333110 111122
Q ss_pred -----HHHHHHHHccCChHHHHHHHHHHHHC--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 046930 695 -----ATLIYNLCKEGQLLDAKKLFDRMVLK--GFKPS---TRIYNSFIDGYCKFGQLEEAFKFLHDLK 753 (965)
Q Consensus 695 -----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 753 (965)
..|+..|...|++.+|.+++.++.+. ..... ..++-.-+..|...|++.++...+.+..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13455566666666666666665542 11111 2233344555555666666665555543
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.08 E-value=7.3 Score=47.35 Aligned_cols=121 Identities=7% Similarity=-0.009 Sum_probs=81.4
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--------------------CC
Q 046930 21 CIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV--------------------KY 80 (965)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------~~ 80 (965)
|...+.++.|..+... + +.++.....+++++...|++++|..+|.++...-. ..
T Consensus 822 l~~~~~~~~~~~l~~~-~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 822 LFLFKQYNACMQLIGW-L-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHSCTTHHHHHHHH-S-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHHHHhhh-c-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 3566777766554433 2 34555556778889999999999999987532110 00
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV----VSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
..-+.-|..++..+.+.|.++.++++-..+++..+ +.+. ..|..+...+...|++++|...+-.+..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 11223466777888888899999988888887542 1221 2577888888889999999888877654
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.79 E-value=2.7 Score=47.37 Aligned_cols=31 Identities=3% Similarity=0.029 Sum_probs=24.1
Q ss_pred CchhhhHHHHh-hhccchHHHHHHHHHHHhcc
Q 046930 930 DFNFCYSKVAS-FCSKGELQKANKLMKEMLSS 960 (965)
Q Consensus 930 ~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~ 960 (965)
.....+-+++- ..+.++++||++.|+..|..
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~ 642 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA 642 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34556666666 77889999999999998863
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.84 E-value=3.5 Score=39.16 Aligned_cols=56 Identities=27% Similarity=0.245 Sum_probs=37.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+.+.|++++|++.....++.+ |.+...-..+...+|-.|+++.|.+.++.+.+.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4556666667776666666666 6666666666666777777777766666666543
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.38 E-value=2 Score=44.72 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=68.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCC-----c--------------hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPF-----D--------------NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~-----~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 119 (965)
..|+.+.|...+..++......+. . ..+...++..+...|++++|+..++.++..+ |-+
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~ 204 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH--PYR 204 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 357888888888888775321010 0 0233456677888999999999999999877 677
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 120 VVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
-..|..++.++.+.|+..+|+..|+++.+
T Consensus 205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999875
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.71 E-value=2 Score=48.45 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=49.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIEL 440 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (965)
+..+...|+++-|+.+-+++....|.+-.+|..|+.+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 555778899999999999999999999999999999999999999999888775
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.19 E-value=43 Score=38.70 Aligned_cols=324 Identities=11% Similarity=0.019 Sum_probs=147.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCCHhHHHH
Q 046930 178 YTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG-------LVADEFVYAT 250 (965)
Q Consensus 178 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~ 250 (965)
|..++.+..+.++.+.+.++|..+... .+...-..+.-.+.+.++-.--..+.+.+.... +-.+..+-..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~L 309 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDY 309 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHHhCCCChHHH
Confidence 555666777888999999999998742 243332333333444333222222222221100 0111111111
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCC-CH--HHHHHHHHHHHhcCCcchHHH-----HHcCCCCCHHHHHH-HHHHhh
Q 046930 251 LIDGVCRRGDLDCAFRLLEDMEKKGIKP-SI--VTYNTIINGLCKVGRTSDAEE-----VSKGILGDVVTYST-LLHGYI 321 (965)
Q Consensus 251 l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~--~~~~~l~~~~~~~g~~~~a~~-----~~~~~~~~~~~~~~-l~~~~~ 321 (965)
-...+.+.+..+ ..+++.++.. +.+ +. .+-..+.+++...|-..+..- .+.+. .+..-+.+ ..-+..
T Consensus 310 yl~FL~~~n~~d--~~~l~~~K~~-ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlI 385 (963)
T 4ady_A 310 YNTFLLNNKNID--IGLLNKSKSS-LDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVI 385 (963)
T ss_dssp HHHHHHHHCCCC--HHHHHHHHHH-SCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHH
T ss_pred HHHHHHhccccc--hhhHHHHHhh-hcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhh
Confidence 122222222221 1222223221 111 11 133455667777775443311 11111 12112222 223456
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHchhCCC-------cccHHHHHHH--HHHH
Q 046930 322 EEDNVNGILETKQRLEEAGIQMDIV--MCNILIKALFMVGALEDARALYQAMPEMNL-------VANSVTYSTM--IDGY 390 (965)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l--~~~~ 390 (965)
..++.++++..+...+..+...+.. .-..+.-+....|..+++..++...+...- .+....-..+ +.++
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 6788888887776655421112332 333344445556665677777776654210 0112222233 3333
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH--HcCChh
Q 046930 391 CKLGRIEEALEIFDELRRMSISSV--ACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATF--AKGGVG 466 (965)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~ 466 (965)
...++ +++...+..+........ .+-..++..+...|+.+....++..+.+. .+....+.+..++. ..|+.+
T Consensus 466 ~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChH
Confidence 33444 455566666555422211 23345555666788877777777776653 23333333333333 456666
Q ss_pred hHHHHHHHHHhcc-cccchhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 046930 467 GVLNFVYRIENLR-SEIYDIICNDVISFLCKRGSSEVASELYMFMRK 512 (965)
Q Consensus 467 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 512 (965)
.+..+++.+.... +......-..++-+|+..|+.....+++..+..
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 6666666655432 111112222344455566665555555555443
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.99 E-value=8.7 Score=46.70 Aligned_cols=168 Identities=8% Similarity=0.064 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh-hh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC-GQ 165 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~-~~ 165 (965)
...++..+...+.++-|.++... .+.++..-..++.++...|++++|.++|+++-. ++..+.......-. ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 34566677788888887765433 256666667888999999999999999988642 22111111000000 00
Q ss_pred hhh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 166 MVD--KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL----ITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 166 ~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+.. .....-...|..++..+-+.+.++.+.++-..+++...+.+. ..|..+...+...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 000 011123456777777888888888888887777664322222 24677778888888888888888777655
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHhH
Q 046930 240 GLVADEFVYATLIDGVCRRGDLDC 263 (965)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~g~~~~ 263 (965)
.. -......|+...+..|..+.
T Consensus 968 ~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HH--HHHHHHHHHHHHHhCCChhh
Confidence 32 34556666666666665443
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.41 E-value=6.5 Score=41.45 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=33.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVLK--GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLK 753 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 753 (965)
+...++..|.+.|++++|.++|.++... +...-...+...+.++...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455556666666666666666666553 212223445555556666666666666665543
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.15 E-value=4.4 Score=42.78 Aligned_cols=101 Identities=12% Similarity=-0.043 Sum_probs=74.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhh----H
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVS----Y 123 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~ 123 (965)
.+...++..|.+.|+++.|.++|.++............++..+++.+...+++..+...+.++...-.-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456788999999999999999999988865433566788889999999999999999999998653211223222 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
...+..+...+++.+|.+.|-.+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2333445667899999988877654
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.72 E-value=5.6 Score=41.24 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHhHH
Q 046930 382 TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE-----KGLSLYVGMHK 453 (965)
Q Consensus 382 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 453 (965)
+...++..+...|++++|+..+..+...+|-+...|..++.++...|+..+|++.|+.... .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445677788899999999999999988999999999999999999999999999988654 58888876543
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.39 E-value=4.7 Score=42.69 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHh-----CC----CCCCHHhHHHHHHHHHhcCChhHH----------HHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRN-----HG----TLPSSFTFCSLVYSFCSQGNMSRA----------VEVLEL 72 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~~~~~~~l~~~~~~~g~~~~A----------~~~~~~ 72 (965)
.++.|...+..+++++++|..+-...+.. .. ..-.+.+|.....++-..|+.... ...+-.
T Consensus 137 y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~ 216 (523)
T 4b4t_S 137 FMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK 216 (523)
T ss_dssp ------------------------------------------------------------------CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH
Confidence 44455555667889999887765543310 00 011334455555555555655442 112222
Q ss_pred HHh-----cCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh---hHHHHHHHHHhcCChhHHHHHHH
Q 046930 73 MSD-----ENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV---SYTSLVIALCMLGRVNEVNELFV 144 (965)
Q Consensus 73 ~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~ 144 (965)
..+ .+. ......++.+++.|...+.++.|..+..+..--....++.. -+..+++.+.-.+++.+|.+.+.
T Consensus 217 ~~rta~lr~D~--~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 217 FLKIASLKHDN--ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHHHCCSCSSS--CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcccCc--chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 222 222 44567899999999999999999999999852100011212 23467888999999999999999
Q ss_pred HHHHCCC
Q 046930 145 RMESEGL 151 (965)
Q Consensus 145 ~~~~~~~ 151 (965)
.+....+
T Consensus 295 ~A~rkap 301 (523)
T 4b4t_S 295 AAIRKAP 301 (523)
T ss_dssp HHTSSCS
T ss_pred HHHHhCC
Confidence 9887654
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.13 E-value=14 Score=28.70 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCII 421 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (965)
+.-+..+-++.+...++.|++.+....+.+|-+.+++..|+++|+.+.........+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 45566677777777788888888888888888888888888888888776433334455443
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.56 E-value=5 Score=38.11 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=41.9
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV 78 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 78 (965)
.+.|++++|++.....++.. |.|...-..+++.++-.|+|++|.+-++...+.++
T Consensus 8 l~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 57788888888888877765 55666666777778888888888888888877773
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.04 E-value=21 Score=27.62 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=23.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 735 GYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDF 787 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (965)
.+.+.|++++|..+.+.. ..||...|..|.. .+.|..+++...+.++
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 345555555555554443 2455555544422 2445555555555444
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.90 E-value=66 Score=31.93 Aligned_cols=198 Identities=9% Similarity=0.075 Sum_probs=99.9
Q ss_pred CCHhHHHHHHHHHHHCCCC---CC-HHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHH-
Q 046930 259 GDLDCAFRLLEDMEKKGIK---PS-IVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETK- 333 (965)
Q Consensus 259 g~~~~A~~~~~~~~~~g~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~- 333 (965)
+++++.+.-++.-++.|-- -. ..++.++..-|.+.+++++|++++. .-...+.+.|+...+-++.
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~----------~GA~~ll~~~Q~~sg~DL~~ 79 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILA----------SVSQTLLRSGQGGSGGDLAV 79 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH----------HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHH----------HHHHHHHHCCCcchHHHHHH
Confidence 3444444445544444421 11 2356677777888888888887642 2233445556655544443
Q ss_pred ---HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 046930 334 ---QRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS 410 (965)
Q Consensus 334 ---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (965)
+...+.++++|......++..+.. + +|+......+ ..+|+..-.+.-...
T Consensus 80 llvevy~~~~~~~~~~~~~rL~~L~~~-------------~-----~~~~p~r~~f---------i~~ai~WS~~~g~~~ 132 (336)
T 3lpz_A 80 LLVDTFRQAGQRVDGASRGKLLGCLRL-------------F-----QPGEPVRKRF---------VKEMIDWSKKFGDYP 132 (336)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHTT-------------S-----CTTCHHHHHH---------HHHHHHHHHHHSSCT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh-------------C-----CCCCcHHHHH---------HHHHHHHHhhcCCCC
Confidence 444455566665444444433321 1 1211111111 122332222211112
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHH
Q 046930 411 ISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDV 490 (965)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 490 (965)
..++.....++..|.+.+++.+|...|- .|-.+....+..++..+...+...++- ......
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~d---------------lfiaRa 193 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAP---------------LYCARA 193 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHH---------------HHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHH---------------HHHHHH
Confidence 3377788888888888888888877762 233333345555554444433322221 222233
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh
Q 046930 491 ISFLCKRGSSEVASELYMFMRK 512 (965)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~~ 512 (965)
+-.|.-.++...|...+....+
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3446677888888887766543
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.86 E-value=1e+02 Score=34.05 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHc
Q 046930 285 TIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEA 339 (965)
Q Consensus 285 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (965)
..+..+.+.+++......+...+.+...-.....+....|+..+|......+-..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 3344445555555555555443444444444555555556655555555444433
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.38 E-value=33 Score=36.43 Aligned_cols=84 Identities=8% Similarity=-0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHhcCChhhHH
Q 046930 31 LLVLKDCLRNHGTLPS----SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD--NFVCSSVVSGFCKIGKPELAI 104 (965)
Q Consensus 31 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 104 (965)
...+..+.+...+..| ...++.+++.|...+.+++|..+..+..-.....+.+ ..-++-+|+.+...++|.+|.
T Consensus 211 r~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~ 290 (523)
T 4b4t_S 211 RSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTAN 290 (523)
T ss_dssp HTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3455555666666555 3457888999999999999999999874221000111 234566789999999999999
Q ss_pred HHHHHHHHcC
Q 046930 105 GFFENAISLG 114 (965)
Q Consensus 105 ~~~~~~~~~~ 114 (965)
+.|..+....
T Consensus 291 ~~L~~A~rka 300 (523)
T 4b4t_S 291 EYIIAAIRKA 300 (523)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.52 E-value=69 Score=31.52 Aligned_cols=26 Identities=23% Similarity=-0.022 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHc
Q 046930 279 SIVTYNTIINGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 279 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 304 (965)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56667777777777777777777654
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.45 E-value=19 Score=27.71 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=23.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 735 GYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
.+.+.|++++|..+.+.. ..||...|..|.. .+.|..+++...+.++-
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345555555555544333 2455555444422 24555555555554443
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.32 E-value=29 Score=28.64 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCII 421 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (965)
+.-+..+-++.+...++.|++.+....+.+|-+.+|+..|+++|+-+.....+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44566667777777888899999999999999999999999999988876433344455444
No 268
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.81 E-value=31 Score=26.83 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046930 190 TIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLID 253 (965)
Q Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 253 (965)
+.-+..+.++.+...+.-|++....+.+++|.+.+++..|.++++.+..+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 556677777777777777888888888888888888888888887776542 223345655543
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.72 E-value=76 Score=31.21 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 413 SVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
++.....++..|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66677777777777777777666553
No 270
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=70.93 E-value=34 Score=29.53 Aligned_cols=194 Identities=11% Similarity=0.018 Sum_probs=92.3
Q ss_pred HHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 046930 289 GLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ--MDIVMCNILIKALFMVGALEDARA 366 (965)
Q Consensus 289 ~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 366 (965)
.+.-.|.+..++-++.....-...|. -.-+|-+.+++.+|+..++.++...+. ||+..-
T Consensus 42 ~LyyngEY~R~Lf~L~~lNT~Ts~YY-k~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~------------------ 102 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLNTCTSKYY-ESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR------------------ 102 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCCBHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH------------------
T ss_pred hhhhcchHhHHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc------------------
Confidence 44557777777766655433222222 233566778888888888887755443 221100
Q ss_pred HHHHchhCCCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCC
Q 046930 367 LYQAMPEMNLVAN-SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLC-KSGMVDMATEVFIELNEKG 444 (965)
Q Consensus 367 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 444 (965)
++.|.-. +.| ...++.++..+...|+.++|+..+..--...+--+.+=+.+..--. ..-+.+..+..-+ .|
T Consensus 103 -~~~ffvd--~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~----~~ 175 (242)
T 3kae_A 103 -IQEMFVD--PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGR----RG 175 (242)
T ss_dssp -HHTTSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---------------C
T ss_pred -cceeeec--cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhh----cc
Confidence 0111110 122 3456667777888888888888877655443321111111110000 0000000000000 00
Q ss_pred CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 046930 445 LSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGS 515 (965)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 515 (965)
+. ...+....... ..- .-+.+++..+..|...+-........|...|-.++...+|....+.++
T Consensus 176 i~--~~y~~d~~~lH-e~~----s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 176 IE--EEYVSDSIEFH-ESL----SPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HH--HHHHHHHHHHH-HHC----CHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ch--hhhhhhHHHHH-Hhc----cHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 00 00000000000 000 003445555555655555555666778889999999999988877543
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.12 E-value=44 Score=25.88 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 046930 666 LCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK 720 (965)
Q Consensus 666 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (965)
+...|+|++|..+.+... -||...|.+|... +.|-.+++...+..+..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 445555555555544332 3555555554432 445555555555444443
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.61 E-value=36 Score=30.68 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 046930 707 LLDAKKLFDRMVLKGFKPS-TRIYNSFIDGYCKFGQLEEAFKFLHDLKINC 756 (965)
Q Consensus 707 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 756 (965)
..++.++|.-|...|+--. ...|...+..+...|++.+|.++|+.-++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444445544444433222 2333444444444455555555554444433
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.24 E-value=82 Score=28.67 Aligned_cols=121 Identities=10% Similarity=-0.007 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046930 655 NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFID 734 (965)
Q Consensus 655 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 734 (965)
+...-...+.++...++. ++...+..+++ .++..+-...+.++.+.|.. ++...+..+++ .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHH
Confidence 333333344444444432 23333333332 24444444444555555542 33444444442 344444445555
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 735 GYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
++...|.. ++...+.++.. .++...-...+.++...+. ++++..+.++.
T Consensus 135 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 135 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 55555542 34444444443 3444444444455544443 34455555544
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.23 E-value=59 Score=26.93 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046930 190 TIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLID 253 (965)
Q Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 253 (965)
+.-+..+-++.+...+.-|++......++++.+.+++..|.++|+-+..+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455666667777777777777777777888888888888888887776542 233445555543
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.93 E-value=47 Score=29.95 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=44.9
Q ss_pred cCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 046930 669 QGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPS 725 (965)
Q Consensus 669 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 725 (965)
.++..++.++|..|.+.|+... +..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4457788899998888766555 66677888888889999999999999888766663
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.46 E-value=41 Score=25.97 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 046930 665 SLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKG 721 (965)
Q Consensus 665 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (965)
.+...|+|++|..+.+... -||...|.+|... +.|-.+++...+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 3445566666655544332 3555555555432 5555555555555555443
No 277
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=60.24 E-value=1.2e+02 Score=29.06 Aligned_cols=125 Identities=13% Similarity=0.059 Sum_probs=61.0
Q ss_pred CCHhhHHHHHHHHHccCC-----hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhH
Q 046930 689 PSEVSYATLIYNLCKEGQ-----LLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFT 763 (965)
Q Consensus 689 ~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 763 (965)
++..+-...+.++...+. ...+...+..++. .++..+-...+.++...|+ .++...+.++.. .++...
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~v 175 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDV 175 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHH
Confidence 344444444444444331 2344444444443 3455555555566666655 234555555553 455544
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 764 VSAVINGFCQKG-DMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 764 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
-...+.++...| ..+.++..+..+.+ .++...-...+.++.+.|. .+++..+.++++
T Consensus 176 r~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~-~~~~~~L~~~l~ 233 (280)
T 1oyz_A 176 RNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD-KRVLSVLCDELK 233 (280)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC-GGGHHHHHHHHT
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC-HhhHHHHHHHhc
Confidence 444455554444 23455555555532 3455555555666666664 445555555554
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.00 E-value=1.9e+02 Score=29.60 Aligned_cols=136 Identities=7% Similarity=-0.034 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-CCccc---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHH----
Q 046930 347 MCNILIKALFMVGALEDARALYQAMPEM-NLVAN---SVTYSTMIDGYCKL-GRIEEALEIFDELRRMSISSVACY---- 417 (965)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~---- 417 (965)
....|+..|.+.|+.++..+++...... +.-|. ......++..+... +..+.-.++..+..+........|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777778888888877777765431 11121 23455666665543 344444555555544311111122
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHH
Q 046930 418 --NCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLC 495 (965)
Q Consensus 418 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (965)
..++..|...|++.+|.+++.++.+.--..|..+ .++ .++-.-+.+|.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~--~ll----------------------------ev~lle~~~~~ 150 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKN--LLV----------------------------EVQLLESKTYH 150 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH--HHH----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--hHH----------------------------HHHHHHHHHHH
Confidence 3678888999999999999888876321222221 112 23344456788
Q ss_pred hcCcHHHHHHHHHHHHh
Q 046930 496 KRGSSEVASELYMFMRK 512 (965)
Q Consensus 496 ~~g~~~~A~~~~~~~~~ 512 (965)
..+++.++...+..+..
T Consensus 151 ~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 151 ALSNLPKARAALTSART 167 (394)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHh
Confidence 88999999999888654
No 279
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=53.65 E-value=1.5e+02 Score=28.00 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHh---CCCCCChHHHHHHHHHH----h-cCCCHHHHHHHHHHHHh
Q 046930 777 MEGALGFFLDFNT---KGVSPDFLGFLYLVKGL----C-TKGRMEEARSILREMLQ 824 (965)
Q Consensus 777 ~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~----~-~~g~~~eA~~~~~~~~~ 824 (965)
.+.|.+.|+++.+ ..++|.++....|+-.+ + -.++.++|..+.+++.+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777777643 35888877754444433 2 48999999998887765
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.94 E-value=83 Score=26.89 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=20.6
Q ss_pred HHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 745 AFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 745 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
+.++|..|...|+--. ..-|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444444433332 2233344444444444444444444444433333
No 281
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=52.24 E-value=65 Score=34.32 Aligned_cols=75 Identities=16% Similarity=0.044 Sum_probs=51.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
.++........+..|...|.++.... |.+...++.++-.....|+.-+|+-.|-+.+... .|-+.+..++...+.
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~---P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~--~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLV---PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhC---CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC--CCChhHHHHHHHHHH
Confidence 34444445566777888888877777 6777778888877777777777777777777554 556666666665543
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.45 E-value=91 Score=26.63 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 046930 675 AFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKP 724 (965)
Q Consensus 675 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (965)
+.++|..|.+.|+-.. +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555544433333 3334444444444555555555555544443333
No 283
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.56 E-value=2.1e+02 Score=28.42 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHc
Q 046930 279 SIVTYNTIINGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 279 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 304 (965)
|......+...|.+.+++.+|+..|-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 55566666677777777777766653
No 284
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.44 E-value=1.8e+02 Score=27.78 Aligned_cols=207 Identities=14% Similarity=0.044 Sum_probs=97.8
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCCCH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPEL----AIGFFENAISLGALKPNV 120 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~ 120 (965)
++..+-..-+.++...|. +.++..+..++.. ++...-...+.++...|.... .+..+...... .++.
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~ 105 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCSD-----KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSA 105 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC-----SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHcC-----CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCH
Confidence 444444445555555553 4455555555432 233445555566666664332 22333322221 3555
Q ss_pred hhHHHHHHHHHhcCC-----hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046930 121 VSYTSLVIALCMLGR-----VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAV 195 (965)
Q Consensus 121 ~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 195 (965)
......+.++...+. ...+...+..+.. .++..+-...+.+....|+. .+.
T Consensus 106 ~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-----------------------d~~~~vR~~a~~aL~~~~~~-~~~ 161 (280)
T 1oyz_A 106 CVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----------------------DKSTNVRRATAFAISVINDK-ATI 161 (280)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-----------------------CSCHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-----------------------CCCHHHHHHHHHHHHhcCCH-HHH
Confidence 555555555555442 3345555544443 25555555555556655552 244
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 196 GILNKMIEDRLRPNLITYTAIIFGFCKKG-KLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
..+..++. .++.......+.++...+ ....+...+..+.. .++..+-...+.++.+.|+......+. .+.+.
T Consensus 162 ~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~-~~l~d 234 (280)
T 1oyz_A 162 PLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLC-DELKK 234 (280)
T ss_dssp HHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHH-HHHTS
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHH-HHhcC
Confidence 45545543 235555555555555544 23344444444443 345556666666677767544333333 33332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCc
Q 046930 275 GIKPSIVTYNTIINGLCKVGRT 296 (965)
Q Consensus 275 g~~~~~~~~~~l~~~~~~~g~~ 296 (965)
++ +....+.++.+.|..
T Consensus 235 ---~~--vr~~a~~aL~~i~~~ 251 (280)
T 1oyz_A 235 ---NT--VYDDIIEAAGELGDK 251 (280)
T ss_dssp ---SS--CCHHHHHHHHHHCCG
T ss_pred ---cc--HHHHHHHHHHhcCch
Confidence 22 223344555555553
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.81 E-value=99 Score=26.85 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=30.4
Q ss_pred HHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC
Q 046930 745 AFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD 795 (965)
Q Consensus 745 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 795 (965)
+.++|..|...|+--. ...|...+..+...|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666654443 33455556666666666666666666666555553
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.29 E-value=1.3e+02 Score=26.16 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 046930 675 AFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKP 724 (965)
Q Consensus 675 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (965)
+.++|..|.+.|+-.. +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455555555544333 3445555555555566666666666555554444
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.42 E-value=2e+02 Score=26.82 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=66.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCC----chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPF----DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
--+..+...++|++|++.+++....-...+. ........+..-.....-.-+..+.+.+ .. .+++......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHH
Confidence 4466788889999999999976543110011 1112233333333333333344444444 32 35566677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL 182 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 182 (965)
..+.+.|+.++|.++|-+... ..|+..++.-+...|+..|..-+
T Consensus 99 ~~L~rLg~~~~A~~lfL~~rs-----------~~i~~~~r~l~~~gd~~~Yi~~L 142 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNRS-----------NFIQDLILQIGSVDNPTNYLTQL 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----------HHHHHHHHCC--CCSHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHH-----------HHHHHHHHHhcccCCHHHHHHHH
Confidence 889999999999999988764 23444444445555666655433
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.78 E-value=1.1e+02 Score=35.95 Aligned_cols=53 Identities=6% Similarity=0.014 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
.++..+...|.++-|.++... .+.++..-+.++++|...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 366777788888776654322 35676666788999999999999999998864
No 289
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.60 E-value=1.9e+02 Score=25.91 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=38.2
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhCC
Q 046930 625 STIVAALCR---EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC-----FVEAFRLFDSLERID 686 (965)
Q Consensus 625 ~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~ 686 (965)
..+++++.| ..++|.|+-.+.+|++.|..|....-+.++.+....|. ...|...++.....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 334444443 46888899999999988877666666666666655553 223444444444444
No 290
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=41.81 E-value=2.2e+02 Score=26.48 Aligned_cols=170 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-CChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 046930 655 NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKE-GQLLDAKKLFDRMVLKGFKPSTRIYNSFI 733 (965)
Q Consensus 655 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 733 (965)
+..-...+.....+.+++++..+..+++.+.+...+..--+.|-.+|-+. |....++.++..+.++.-.........++
T Consensus 7 ~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i 86 (236)
T 3iqu_A 7 ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEV 86 (236)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHH
Q ss_pred HHHHh--cCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCH-----------------HHHHHHHHHhHh---CC
Q 046930 734 DGYCK--FGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDM-----------------EGALGFFLDFNT---KG 791 (965)
Q Consensus 734 ~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~~---~~ 791 (965)
.-|.. ...+..-..-.-.++...+-|+..+-.+-+--+-..|++ +.|.+.|+++.+ ..
T Consensus 87 ~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 166 (236)
T 3iqu_A 87 REYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKE 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCCChHHHHHHHHHHh-----cCCCHHHHHHHHHHHHh
Q 046930 792 VSPDFLGFLYLVKGLC-----TKGRMEEARSILREMLQ 824 (965)
Q Consensus 792 ~~p~~~~~~~l~~~~~-----~~g~~~eA~~~~~~~~~ 824 (965)
++|.++....|+-.+. -.++.++|..+.+++.+
T Consensus 167 L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 167 MPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 291
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.25 E-value=2e+02 Score=25.82 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=40.6
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhCCC
Q 046930 623 DYSTIVAALCR---EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC-----FVEAFRLFDSLERIDM 687 (965)
Q Consensus 623 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~ 687 (965)
....++.++.| ..+++.|+-.+.+|++.| .|....-+.++.+....|. ...|...++.....|.
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34445555544 468888888888888888 6666666666666666554 3345555555555564
No 292
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=41.03 E-value=2.3e+02 Score=26.54 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHh---CCCCCChHHHHHHHHHH----h-cCCCHHHHHHHHHHHHh
Q 046930 777 MEGALGFFLDFNT---KGVSPDFLGFLYLVKGL----C-TKGRMEEARSILREMLQ 824 (965)
Q Consensus 777 ~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~----~-~~g~~~eA~~~~~~~~~ 824 (965)
.+.|.+.|+++.+ ..++|.++....|+-.+ + -.++.++|..+.+++.+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777777643 35888887744444433 2 48999999998887765
No 293
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=39.51 E-value=4.3e+02 Score=29.25 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 247 VYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 247 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 292 (965)
+|. +|-.+.+.|++++|.++.++.... +..-...+...+..|+.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 564 455677999999999998776532 11111345555566653
No 294
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.95 E-value=2.3e+02 Score=25.43 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
++..+-...+.++.+.++. ++...+..++. .++.......+.++.+.|..+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4444444445555555542 23344444432 345555555555565555433 3344444432 34555555566
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046930 253 DGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKV 293 (965)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 293 (965)
.++.+.+. ..+...+..+.+. ++..+....+.++...
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 66666655 3444455555442 3455555555544433
No 295
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.22 E-value=2.6e+02 Score=25.36 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhCCC
Q 046930 621 VVDYSTIVAALCR---EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC-----FVEAFRLFDSLERIDM 687 (965)
Q Consensus 621 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~ 687 (965)
......++.++.| ..+++.|+-.+.+|++.|..|....-+.++.+....|. ...|...++.....|.
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344555666654 46889999999999998877776666666666666554 3345556666666664
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.86 E-value=2.6e+02 Score=29.05 Aligned_cols=90 Identities=11% Similarity=0.209 Sum_probs=36.6
Q ss_pred cccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 4 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
.|+|-...+|......+ ..+|+|++|.+.--.. -.|.--++.+...+-++=...|+..--+..|..+++.+ ..+
T Consensus 355 ~~LpGAd~L~~~~F~~l-~~~g~y~~AA~~aA~s--P~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g---~Ln 428 (494)
T 1bpo_A 355 NNLAGAEELFARKFNAL-FAQGNYSEAAKVAANA--PKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG---QLN 428 (494)
T ss_dssp TTCSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHS--GGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS---CCC
T ss_pred cCCccHHHHHHHHHHHH-HHcCCHHHHHHHHHhC--ccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC---ccc
Confidence 34444444555555554 4555555554432221 11222233333333222222334444444444444444 233
Q ss_pred hHHHHHHHHHHHhcCC
Q 046930 84 NFVCSSVVSGFCKIGK 99 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~ 99 (965)
..--..+++.-..+|+
T Consensus 429 ~~ESlEl~r~vL~q~r 444 (494)
T 1bpo_A 429 KYESLELCRPVLQQGR 444 (494)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred hHHhhHHhHHHHhccH
Confidence 3333344444444444
No 297
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.83 E-value=2.8e+02 Score=24.85 Aligned_cols=83 Identities=16% Similarity=0.306 Sum_probs=51.2
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHhHHHHH
Q 046930 180 ILLDGFS---KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK-----LEEAFTVFKKVEDLGLVADEFVYATL 251 (965)
Q Consensus 180 ~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l 251 (965)
-+|+++. +-.+.+.|+-.+.+|++.| .|.......++.+.-.-|. ...|...++.....|.+.-.......
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqa 94 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADV 94 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3555554 4679999999999999999 7666666666666665554 33456666666777755444333333
Q ss_pred HHHHHhcCCHhH
Q 046930 252 IDGVCRRGDLDC 263 (965)
Q Consensus 252 ~~~~~~~g~~~~ 263 (965)
+..++..-+-..
T Consensus 95 viyLA~aPKSNs 106 (204)
T 2r9g_A 95 VVDLCLSPKSNS 106 (204)
T ss_dssp HHHHHHSCCCCH
T ss_pred HHHHHcCCccHH
Confidence 333344444333
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.85 E-value=2.5e+02 Score=24.28 Aligned_cols=54 Identities=7% Similarity=0.062 Sum_probs=39.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCC--chHHHHHHHH------HHHhcCChhhHHHHHHHHHH
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPF--DNFVCSSVVS------GFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 112 (965)
+...|+|-+|.++++.+-.... .+ ....|..+++ ...+.|+...|..++.+++.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~--~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYG--RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTC--SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556999999999998887664 33 4455666665 34457888999999988875
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.92 E-value=3.9e+02 Score=31.38 Aligned_cols=23 Identities=4% Similarity=-0.050 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc
Q 046930 349 NILIKALFMVGALEDARALYQAM 371 (965)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~ 371 (965)
..++.+|...|++++|...|+++
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555666666666666554
No 300
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=28.14 E-value=2.8e+02 Score=29.52 Aligned_cols=79 Identities=18% Similarity=0.065 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
.+..+|+.......++.|..+|.++.... |.+...|+.++-.....|+.-+|.-.|-+.+-.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~---------------- 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV---------------- 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS----------------
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC--CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc----------------
Confidence 45567777777888999999999999976 667779999988888888888888777776643
Q ss_pred hhhcCCCCCHHHHHHHHHHHHh
Q 046930 166 MVDKGIKPDTVSYTILLDGFSK 187 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~ 187 (965)
..|-+.+...|...+.+
T Consensus 216 -----~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 216 -----KFPFPAASTNLQKALSK 232 (497)
T ss_dssp -----SBCCHHHHHHHHHHHHH
T ss_pred -----CCCChhHHHHHHHHHHH
Confidence 24667777777766644
No 301
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.00 E-value=1.7e+02 Score=25.39 Aligned_cols=71 Identities=8% Similarity=-0.017 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHhcCCh
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDE--NVKYPFDNFVCSSVVSGFCKIGKP 100 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~ 100 (965)
.+.++..+...++..|...++ .-..++..+...+..-.|.++++.+.+. ++ ..+..+.+.-+..+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~--~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDL--NVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGG--CCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHCCCE
Confidence 456677777777777776654 3344555666667778888888888776 54 44555666666666666644
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.77 E-value=1.9e+02 Score=23.87 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhCCC
Q 046930 625 STIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC--FVEAFRLFDSLERIDM 687 (965)
Q Consensus 625 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~ 687 (965)
..++.-|...|+.++|...++++...... .......+..++.+.++ .+....++..+.+.|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 55677788888888888888877421111 22334445555555432 3456666766666553
No 303
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=27.70 E-value=3.9e+02 Score=25.19 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=22.8
Q ss_pred cCCCchhhhHHHHh-----hhccchHHHHHHHHHHHhc
Q 046930 927 KFHDFNFCYSKVAS-----FCSKGELQKANKLMKEMLS 959 (965)
Q Consensus 927 ~~p~~~~~~~~~~~-----~~~~g~~~~A~~~~~~~~~ 959 (965)
++|..|++..+.-. |.-.|+-++|..+-+++..
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47888888776655 4446888888777666643
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.17 E-value=1.1e+02 Score=28.22 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=7.5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 046930 732 FIDGYCKFGQLEEAFKFLHD 751 (965)
Q Consensus 732 l~~~~~~~g~~~~A~~~~~~ 751 (965)
.+..+...|++.+|..+|+.
T Consensus 156 wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 156 YANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.08 E-value=2.7e+02 Score=22.84 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 046930 383 YSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGM--VDMATEVFIELNEKGLSL 447 (965)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~ 447 (965)
...++.-|...|+.++|.+.++++.........+...+..++-+.++ .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34455666667777777777766542211122233333334443321 345566666666555433
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.65 E-value=1.1e+02 Score=28.14 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 778 EGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 778 ~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+++.++|..|...|+--..+. |...+..+...|++.+|..+|+..++
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566666655555555544 44455555566666666666666665
No 307
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=24.53 E-value=4.4e+02 Score=24.68 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=21.6
Q ss_pred cCCCchhhhHHHHh-----hhccchHHHHHHHHHHHh
Q 046930 927 KFHDFNFCYSKVAS-----FCSKGELQKANKLMKEML 958 (965)
Q Consensus 927 ~~p~~~~~~~~~~~-----~~~~g~~~~A~~~~~~~~ 958 (965)
++|.+|++..+.-. |.-.++.++|..+-++++
T Consensus 165 L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 165 MQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47777777776555 444677777777766654
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.37 E-value=2.4e+02 Score=29.39 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=10.2
Q ss_pred hcCcHHHHHHHHHHHH
Q 046930 496 KRGSSEVASELYMFMR 511 (965)
Q Consensus 496 ~~g~~~~A~~~~~~~~ 511 (965)
+..+...|+.+|.++.
T Consensus 468 k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 468 KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHCSHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcC
Confidence 4446677777776653
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.22 E-value=2.2e+02 Score=24.36 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 046930 383 YSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGM--VDMATEVFIELNEKGLSL 447 (965)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~ 447 (965)
...++.-|...|+.++|.+.++++.........+...+..++-+.++ .+.+..++..+...++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34455556666677777666666542211122233333334433222 344555666665555433
No 310
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.95 E-value=1.1e+02 Score=23.24 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
..+...+..+.+.|+|++|+++.+.+
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34556666667777777777766654
No 311
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.57 E-value=1.1e+02 Score=23.18 Aligned_cols=27 Identities=26% Similarity=0.161 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
.+...+..+.+.|+|++|++..+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456677788889999999888777653
No 312
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.22 E-value=4.1e+02 Score=24.72 Aligned_cols=90 Identities=11% Similarity=-0.006 Sum_probs=47.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046930 181 LLDGFSKEGTIEKAVGILNKMIED--RLRPN----LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDG 254 (965)
Q Consensus 181 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (965)
-+..+....++++|.+++++..+. +.++. .......+..-.....-.-+..+.+++. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 456778889999999998887643 22210 0111112222222222222333344442 2 3345555556677
Q ss_pred HHhcCCHhHHHHHHHHHHH
Q 046930 255 VCRRGDLDCAFRLLEDMEK 273 (965)
Q Consensus 255 ~~~~g~~~~A~~~~~~~~~ 273 (965)
+.+.|+.+.|..+|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7778888888777765543
No 313
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.99 E-value=49 Score=25.00 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=17.7
Q ss_pred hhccchHHHHHHHHHHHhcc
Q 046930 941 FCSKGELQKANKLMKEMLSS 960 (965)
Q Consensus 941 ~~~~g~~~~A~~~~~~~~~~ 960 (965)
.-..|+|++|+.+|.++++.
T Consensus 26 ~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 26 LDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 78889999999999998864
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.77 E-value=2.6e+02 Score=25.40 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHchhCCCcccHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHH
Q 046930 361 LEDARALYQAMPEMNLVANSV-------TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMA 433 (965)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 433 (965)
++.|+.+|+.+.+.-.-++.. .-...+..|.+.|.+++|.+++++.....+.+...-..|+..-.+...+...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~ 167 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPV 167 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHH
Q ss_pred HHHH
Q 046930 434 TEVF 437 (965)
Q Consensus 434 ~~~~ 437 (965)
+..|
T Consensus 168 lqnF 171 (235)
T 3bu8_A 168 IQNF 171 (235)
T ss_dssp HHTC
T ss_pred HHhc
No 315
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.08 E-value=90 Score=21.45 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCccchhcHHHHHHHH-HhcCcchhhh
Q 046930 500 SEVASELYMFMRKRGSVVTDQSYYSILKGL-DNEGKKWLIG 539 (965)
Q Consensus 500 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~ 539 (965)
.++|...|.+|++..-.++.-+|...++.+ +...+++...
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~ 42 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD 42 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcccccc
Confidence 368889999998888888899999999998 7887776643
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.64 E-value=1.8e+02 Score=24.82 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhCCC
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC--FVEAFRLFDSLERIDM 687 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~ 687 (965)
...++.-|...|+.++|...++++...... .......+..++.+.++ .+....++..+.+.++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 356777788888888888888887421111 22344445555555322 3456666666665553
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.62 E-value=3.6e+02 Score=22.61 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=32.7
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC
Q 046930 35 KDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK 99 (965)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 99 (965)
...++..|...++.= ..++..+...+..-.|.++++.+.+.++ ..+..+.+..+..+...|-
T Consensus 10 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~--~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 10 LETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFP--NMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCT--TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCC--CCChhhHHHHHHHHHHCCC
Confidence 334555565555322 2333444445556667777777766554 3444455555555555553
No 318
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.62 E-value=4.5e+02 Score=23.78 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=47.7
Q ss_pred HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHhHH
Q 046930 177 SYTILLDGFS---KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK-----LEEAFTVFKKVEDLGLVADEFVY 248 (965)
Q Consensus 177 ~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~ 248 (965)
...-+|+++. +-.+.+.|+-++.+|++.|-.|.......++.+.-.-|. ...|...++.....|.+.-....
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 113 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFL 113 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3344555654 467999999999999999877766666666666655553 34566666777777754433333
No 319
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.52 E-value=4.9e+02 Score=24.13 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=22.7
Q ss_pred cCCCchhhhHHHHh-----hhccchHHHHHHHHHHHhc
Q 046930 927 KFHDFNFCYSKVAS-----FCSKGELQKANKLMKEMLS 959 (965)
Q Consensus 927 ~~p~~~~~~~~~~~-----~~~~g~~~~A~~~~~~~~~ 959 (965)
++|.+|++..+.-. |.-.|+-++|..+-+++..
T Consensus 164 L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 164 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47888887776555 4446888888777776653
No 320
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.88 E-value=4.3e+02 Score=23.27 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
++..+-...+.++.+.++. ++...+..++. .++...-...+.++.+.++. .+...+..+.. .++..+-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444444444444442 23333333332 23444444455555555543 23333333332 23455555555
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 253 DGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 292 (965)
.++.+.|+. .+...+..+... ++..+....+.++.+
T Consensus 160 ~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 160 DALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 555555543 344444444432 244444444444433
Done!