Query 046932
Match_columns 162
No_of_seqs 175 out of 1540
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.6 1.8E-15 6.2E-20 90.7 4.1 51 100-150 3-53 (55)
2 2ect_A Ring finger protein 126 99.5 3.4E-15 1.2E-19 95.8 4.6 58 100-158 13-70 (78)
3 1x4j_A Ring finger protein 38; 99.5 2.7E-15 9.1E-20 95.7 3.5 52 100-152 21-72 (75)
4 3ng2_A RNF4, snurf, ring finge 99.5 3.9E-15 1.3E-19 93.6 3.7 58 100-157 8-68 (71)
5 2l0b_A E3 ubiquitin-protein li 99.5 5.3E-15 1.8E-19 97.9 4.3 52 100-152 38-89 (91)
6 2kiz_A E3 ubiquitin-protein li 99.5 6.7E-15 2.3E-19 92.2 4.3 52 100-152 12-63 (69)
7 2ep4_A Ring finger protein 24; 99.5 7.1E-15 2.4E-19 93.3 4.3 52 100-152 13-64 (74)
8 2ecm_A Ring finger and CHY zin 99.5 8.1E-15 2.8E-19 87.7 3.2 51 101-151 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.5 6.4E-15 2.2E-19 95.5 2.0 53 101-153 14-77 (81)
10 2ea6_A Ring finger protein 4; 99.5 2.1E-14 7.3E-19 89.6 3.3 52 100-151 13-67 (69)
11 1v87_A Deltex protein 2; ring- 99.5 6.1E-14 2.1E-18 96.1 5.3 51 102-152 25-94 (114)
12 2xeu_A Ring finger protein 4; 99.4 2.5E-14 8.4E-19 88.0 2.6 56 101-156 2-60 (64)
13 3dpl_R Ring-box protein 1; ubi 99.4 6.8E-14 2.3E-18 95.2 3.9 51 101-151 36-100 (106)
14 2djb_A Polycomb group ring fin 99.4 8.1E-14 2.8E-18 88.1 3.7 55 100-157 13-67 (72)
15 2ecn_A Ring finger protein 141 99.4 9.7E-14 3.3E-18 87.1 3.8 53 100-157 13-65 (70)
16 2ecy_A TNF receptor-associated 99.4 2E-13 6.8E-18 84.8 5.1 52 100-155 13-65 (66)
17 2ct2_A Tripartite motif protei 99.4 1.9E-13 6.6E-18 89.2 4.9 56 100-155 13-71 (88)
18 1g25_A CDK-activating kinase a 99.4 1.5E-13 5.3E-18 85.0 4.1 56 102-157 3-60 (65)
19 2d8t_A Dactylidin, ring finger 99.4 6.6E-14 2.2E-18 88.3 1.9 51 100-154 13-63 (71)
20 2ysl_A Tripartite motif-contai 99.4 2.8E-13 9.6E-18 85.5 4.5 53 99-155 17-72 (73)
21 4ayc_A E3 ubiquitin-protein li 99.4 9.6E-13 3.3E-17 93.3 7.4 47 103-153 54-100 (138)
22 1t1h_A Gspef-atpub14, armadill 99.4 2.3E-13 8E-18 87.1 3.6 53 100-156 6-59 (78)
23 2egp_A Tripartite motif-contai 99.4 2E-13 7E-18 87.4 3.1 54 100-157 10-70 (79)
24 2yur_A Retinoblastoma-binding 99.4 2.6E-13 9E-18 86.2 3.2 52 100-155 13-67 (74)
25 3lrq_A E3 ubiquitin-protein li 99.3 2.1E-13 7.3E-18 91.6 2.1 52 102-156 22-74 (100)
26 4ap4_A E3 ubiquitin ligase RNF 99.3 5.3E-13 1.8E-17 93.1 3.6 55 101-155 6-63 (133)
27 4a0k_B E3 ubiquitin-protein li 99.3 1.4E-13 4.7E-18 95.1 0.6 51 101-151 47-111 (117)
28 1chc_A Equine herpes virus-1 r 99.3 2.8E-13 9.5E-18 84.4 1.9 48 101-151 4-51 (68)
29 2ecw_A Tripartite motif-contai 99.3 8.3E-13 2.8E-17 85.4 4.2 54 100-157 17-76 (85)
30 2csy_A Zinc finger protein 183 99.3 6E-13 2E-17 85.9 3.2 48 100-151 13-60 (81)
31 2ecv_A Tripartite motif-contai 99.3 1.3E-12 4.4E-17 84.5 4.8 55 100-158 17-77 (85)
32 1e4u_A Transcriptional repress 99.3 2.2E-12 7.4E-17 83.0 5.5 61 99-159 8-69 (78)
33 2y43_A E3 ubiquitin-protein li 99.3 6.7E-13 2.3E-17 88.8 2.4 52 102-156 22-73 (99)
34 3ztg_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 86.0 3.5 47 100-150 11-60 (92)
35 3fl2_A E3 ubiquitin-protein li 99.3 1.8E-12 6.1E-17 90.1 3.3 47 102-152 52-99 (124)
36 2d8s_A Cellular modulator of i 99.2 3.5E-12 1.2E-16 82.4 3.4 52 99-152 12-70 (80)
37 2ysj_A Tripartite motif-contai 99.2 5.2E-12 1.8E-16 77.5 4.0 44 99-146 17-63 (63)
38 1jm7_A BRCA1, breast cancer ty 99.2 4.6E-12 1.6E-16 86.2 3.9 50 103-156 22-74 (112)
39 2ckl_A Polycomb group ring fin 99.2 3E-12 1E-16 87.0 2.7 50 101-153 14-63 (108)
40 2ecj_A Tripartite motif-contai 99.2 9.7E-12 3.3E-16 74.8 4.6 43 100-146 13-58 (58)
41 4ap4_A E3 ubiquitin ligase RNF 99.2 2.1E-12 7.1E-17 90.1 1.8 57 100-156 70-129 (133)
42 2ct0_A Non-SMC element 1 homol 99.2 1E-11 3.4E-16 78.9 4.6 49 100-151 13-63 (74)
43 2kr4_A Ubiquitin conjugation f 99.2 5.2E-12 1.8E-16 82.4 2.9 54 100-157 12-65 (85)
44 2kre_A Ubiquitin conjugation f 99.2 5.3E-12 1.8E-16 84.9 2.9 54 100-157 27-80 (100)
45 1wgm_A Ubiquitin conjugation f 99.2 1.2E-11 4.2E-16 82.8 4.6 54 100-157 20-74 (98)
46 3hct_A TNF receptor-associated 99.2 5.8E-12 2E-16 86.9 2.1 53 99-155 15-68 (118)
47 1z6u_A NP95-like ring finger p 99.2 1.1E-11 3.7E-16 89.1 3.5 48 102-153 78-126 (150)
48 1rmd_A RAG1; V(D)J recombinati 99.1 1.1E-11 3.9E-16 85.0 2.5 51 102-156 23-74 (116)
49 3l11_A E3 ubiquitin-protein li 99.1 3.9E-12 1.3E-16 87.2 0.0 47 101-151 14-61 (115)
50 2ckl_B Ubiquitin ligase protei 99.1 1.4E-11 4.9E-16 89.6 2.7 48 102-152 54-102 (165)
51 1jm7_B BARD1, BRCA1-associated 99.1 2.6E-11 8.7E-16 83.5 2.6 51 102-157 22-72 (117)
52 3knv_A TNF receptor-associated 99.1 2.7E-11 9.4E-16 86.2 2.4 49 99-151 28-77 (141)
53 1bor_A Transcription factor PM 99.0 5.1E-11 1.7E-15 71.6 1.8 47 100-153 4-50 (56)
54 2vje_A E3 ubiquitin-protein li 99.0 9E-11 3.1E-15 72.5 2.1 49 101-151 7-56 (64)
55 2yu4_A E3 SUMO-protein ligase 99.0 7.3E-11 2.5E-15 78.3 1.6 53 101-156 6-67 (94)
56 2y1n_A E3 ubiquitin-protein li 99.0 1.4E-10 4.8E-15 94.6 3.5 49 102-154 332-381 (389)
57 2c2l_A CHIP, carboxy terminus 99.0 9.5E-11 3.3E-15 91.1 2.2 55 100-158 206-261 (281)
58 2vje_B MDM4 protein; proto-onc 99.0 1.8E-10 6.2E-15 70.9 2.2 48 102-151 7-55 (63)
59 3hcs_A TNF receptor-associated 99.0 1.7E-10 5.8E-15 84.1 1.9 53 99-155 15-68 (170)
60 4ic3_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 71.6 1.8 42 103-152 25-67 (74)
61 2f42_A STIP1 homology and U-bo 98.9 4E-10 1.4E-14 83.0 2.0 54 101-158 105-159 (179)
62 3k1l_B Fancl; UBC, ring, RWD, 98.9 5.1E-10 1.7E-14 89.6 1.6 52 100-151 306-372 (381)
63 3htk_C E3 SUMO-protein ligase 98.8 2E-09 6.7E-14 83.4 2.5 54 101-157 180-237 (267)
64 1wim_A KIAA0161 protein; ring 98.8 1.2E-09 4.1E-14 72.2 1.1 52 101-153 4-67 (94)
65 2ecg_A Baculoviral IAP repeat- 98.8 4.7E-09 1.6E-13 66.5 3.7 42 103-152 26-68 (75)
66 2yho_A E3 ubiquitin-protein li 98.6 1.1E-08 3.7E-13 65.6 1.3 42 103-152 19-61 (79)
67 2bay_A PRE-mRNA splicing facto 98.6 1.2E-08 4.2E-13 62.2 1.5 53 103-158 4-56 (61)
68 2ea5_A Cell growth regulator w 98.6 2.3E-08 8E-13 62.2 2.7 45 100-152 13-58 (68)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.6 5E-08 1.7E-12 59.3 3.6 48 100-151 4-58 (60)
70 3t6p_A Baculoviral IAP repeat- 98.5 2.1E-08 7.2E-13 80.9 1.3 43 101-151 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 6.8E-07 2.3E-11 59.1 3.6 45 104-151 3-48 (101)
72 3nw0_A Non-structural maintena 98.2 1.9E-06 6.4E-11 66.1 4.8 50 101-153 179-230 (238)
73 2ko5_A Ring finger protein Z; 96.9 0.00066 2.3E-08 44.2 3.0 51 101-158 27-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.6 0.0064 2.2E-07 39.8 2.4 35 102-137 3-38 (101)
75 2lri_C Autoimmune regulator; Z 93.3 0.087 3E-06 32.0 3.5 47 102-152 12-62 (66)
76 1we9_A PHD finger family prote 89.4 0.12 4E-06 30.9 1.1 49 100-148 4-57 (64)
77 3m62_A Ubiquitin conjugation f 89.2 0.18 6.2E-06 45.5 2.5 54 101-158 890-944 (968)
78 2l5u_A Chromodomain-helicase-D 88.5 0.38 1.3E-05 28.4 2.9 45 100-148 9-57 (61)
79 2cs3_A Protein C14ORF4, MY039 87.2 0.54 1.9E-05 29.6 3.1 40 100-139 13-52 (93)
80 1y02_A CARP2, FYVE-ring finger 85.1 0.18 6E-06 34.3 0.1 49 101-149 18-66 (120)
81 1wil_A KIAA1045 protein; ring 84.8 0.99 3.4E-05 28.6 3.4 34 101-136 14-47 (89)
82 1mm2_A MI2-beta; PHD, zinc fin 84.3 0.32 1.1E-05 28.8 1.0 47 100-150 7-57 (61)
83 3u5n_A E3 ubiquitin-protein li 83.7 0.32 1.1E-05 35.9 1.0 46 101-150 6-55 (207)
84 2k16_A Transcription initiatio 83.7 0.38 1.3E-05 29.5 1.2 50 101-151 17-70 (75)
85 2yql_A PHD finger protein 21A; 83.5 0.26 9E-06 28.6 0.3 45 100-148 7-55 (56)
86 3t7l_A Zinc finger FYVE domain 82.7 0.94 3.2E-05 28.9 2.8 50 101-150 19-74 (90)
87 3o36_A Transcription intermedi 82.7 0.4 1.4E-05 34.6 1.1 45 102-150 4-52 (184)
88 1z2q_A LM5-1; membrane protein 82.6 1.4 4.8E-05 27.6 3.6 54 98-151 17-78 (84)
89 2l43_A N-teminal domain from h 82.3 0.69 2.4E-05 29.5 2.0 58 100-157 23-83 (88)
90 2vpb_A Hpygo1, pygopus homolog 82.3 1 3.4E-05 27.0 2.6 33 101-133 7-40 (65)
91 2yw8_A RUN and FYVE domain-con 81.6 1.2 4.2E-05 27.8 3.0 52 99-150 16-73 (82)
92 1joc_A EEA1, early endosomal a 81.3 4.2 0.00014 27.5 5.8 36 101-136 68-103 (125)
93 1f62_A Transcription factor WS 81.1 0.7 2.4E-05 26.0 1.5 44 104-148 2-49 (51)
94 2puy_A PHD finger protein 21A; 81.0 0.33 1.1E-05 28.5 0.1 46 101-150 4-53 (60)
95 1x4u_A Zinc finger, FYVE domai 79.7 1.7 5.8E-05 27.2 3.2 38 98-135 10-47 (84)
96 1xwh_A Autoimmune regulator; P 79.4 0.49 1.7E-05 28.4 0.5 45 101-149 7-55 (66)
97 1wep_A PHF8; structural genomi 77.2 2.4 8.1E-05 26.2 3.3 50 101-151 11-65 (79)
98 2kgg_A Histone demethylase jar 75.9 1.9 6.5E-05 24.4 2.4 44 104-147 4-52 (52)
99 1zbd_B Rabphilin-3A; G protein 75.8 1.6 5.4E-05 30.1 2.3 48 101-148 54-106 (134)
100 3v43_A Histone acetyltransfera 75.0 0.98 3.3E-05 30.0 1.1 45 104-148 63-111 (112)
101 1weo_A Cellulose synthase, cat 74.9 3.2 0.00011 26.6 3.3 50 102-151 16-69 (93)
102 1wfk_A Zinc finger, FYVE domai 74.7 2.2 7.5E-05 27.1 2.7 51 100-150 7-64 (88)
103 2ri7_A Nucleosome-remodeling f 74.7 1.8 6.1E-05 30.7 2.5 49 100-149 6-59 (174)
104 3i2d_A E3 SUMO-protein ligase 74.3 1.2 4E-05 36.0 1.5 50 103-156 250-304 (371)
105 4fo9_A E3 SUMO-protein ligase 73.9 1.2 4.2E-05 35.7 1.6 52 102-156 215-270 (360)
106 1fp0_A KAP-1 corepressor; PHD 73.7 2.6 8.9E-05 26.9 2.8 46 100-149 23-72 (88)
107 1z60_A TFIIH basal transcripti 73.5 1.8 6.1E-05 25.5 1.8 43 103-146 16-58 (59)
108 2ysm_A Myeloid/lymphoid or mix 73.5 1.4 4.7E-05 29.0 1.5 38 100-138 5-42 (111)
109 1vfy_A Phosphatidylinositol-3- 72.1 3.2 0.00011 25.2 2.9 33 103-135 12-44 (73)
110 3mpx_A FYVE, rhogef and PH dom 71.7 0.8 2.7E-05 37.1 0.0 51 100-150 373-430 (434)
111 2e6r_A Jumonji/ARID domain-con 71.6 0.67 2.3E-05 29.8 -0.4 48 101-149 15-66 (92)
112 2lbm_A Transcriptional regulat 71.0 5 0.00017 27.9 4.0 45 100-148 61-116 (142)
113 2yt5_A Metal-response element- 70.1 2.9 9.8E-05 24.7 2.3 51 100-150 4-62 (66)
114 2lv9_A Histone-lysine N-methyl 69.5 1.3 4.5E-05 28.7 0.7 46 101-148 27-75 (98)
115 2o35_A Hypothetical protein DU 68.6 1.7 5.9E-05 28.3 1.1 12 128-139 43-54 (105)
116 3fyb_A Protein of unknown func 68.5 1.7 5.9E-05 28.3 1.1 11 128-138 42-52 (104)
117 3zyq_A Hepatocyte growth facto 67.5 3.1 0.00011 31.0 2.5 49 102-150 164-220 (226)
118 1dvp_A HRS, hepatocyte growth 66.8 3.1 0.00011 30.7 2.3 35 102-136 161-195 (220)
119 2ro1_A Transcription intermedi 65.4 1.7 6E-05 31.5 0.7 44 103-150 3-50 (189)
120 3v43_A Histone acetyltransfera 64.3 11 0.00038 24.6 4.5 32 103-134 6-42 (112)
121 1zfo_A LAsp-1; LIM domain, zin 64.0 5.2 0.00018 20.0 2.2 27 103-132 4-30 (31)
122 3asl_A E3 ubiquitin-protein li 64.0 1.2 4.1E-05 27.1 -0.4 44 104-148 20-68 (70)
123 2e6s_A E3 ubiquitin-protein li 63.9 1.1 3.6E-05 27.9 -0.6 44 104-148 28-76 (77)
124 3ql9_A Transcriptional regulat 63.7 6 0.0002 27.0 3.1 45 100-148 55-110 (129)
125 2xb1_A Pygopus homolog 2, B-ce 62.6 4 0.00014 26.7 2.0 48 103-150 4-62 (105)
126 3mjh_B Early endosome antigen 62.5 0.93 3.2E-05 23.7 -0.9 16 101-116 4-19 (34)
127 1wem_A Death associated transc 61.6 4.5 0.00015 24.6 2.0 47 102-150 16-71 (76)
128 3lqh_A Histone-lysine N-methyl 61.6 3.9 0.00013 29.6 2.0 48 103-150 3-64 (183)
129 3ask_A E3 ubiquitin-protein li 61.5 2 6.8E-05 32.3 0.4 44 104-148 176-224 (226)
130 2zet_C Melanophilin; complex, 61.1 4.7 0.00016 28.3 2.3 45 102-148 68-116 (153)
131 1wee_A PHD finger family prote 60.6 2.1 7E-05 26.0 0.3 49 101-150 15-67 (72)
132 2ku3_A Bromodomain-containing 60.2 9.5 0.00032 23.0 3.3 50 100-149 14-66 (71)
133 1wev_A Riken cDNA 1110020M19; 60.1 2.4 8.2E-05 26.8 0.6 50 102-151 16-74 (88)
134 3o70_A PHD finger protein 13; 60.1 2.9 0.0001 25.1 0.9 47 100-148 17-66 (68)
135 1weu_A Inhibitor of growth fam 54.0 10 0.00034 24.2 2.7 46 100-150 34-86 (91)
136 1wen_A Inhibitor of growth fam 53.8 10 0.00036 22.8 2.7 46 100-150 14-66 (71)
137 2gmg_A Hypothetical protein PF 51.7 3.1 0.00011 27.4 0.0 23 123-150 72-94 (105)
138 1m3v_A FLIN4, fusion of the LI 51.2 10 0.00036 24.9 2.6 52 102-155 32-84 (122)
139 1wew_A DNA-binding family prot 50.3 8.8 0.0003 23.5 2.0 49 100-150 14-73 (78)
140 1wd2_A Ariadne-1 protein homol 50.2 1.5 5E-05 25.9 -1.6 36 103-138 7-46 (60)
141 4gne_A Histone-lysine N-methyl 50.1 17 0.0006 23.8 3.5 47 100-152 13-65 (107)
142 2jvx_A NF-kappa-B essential mo 50.0 0.92 3.1E-05 22.6 -2.1 14 141-154 4-17 (28)
143 2d8v_A Zinc finger FYVE domain 49.9 10 0.00035 22.7 2.1 32 100-136 6-38 (67)
144 1x64_A Alpha-actinin-2 associa 49.6 18 0.00063 22.1 3.5 42 101-154 24-65 (89)
145 3c6w_A P28ING5, inhibitor of g 48.4 6 0.00021 23.0 0.9 44 100-148 7-57 (59)
146 3shb_A E3 ubiquitin-protein li 48.3 3.2 0.00011 25.7 -0.4 44 104-148 28-76 (77)
147 3a1b_A DNA (cytosine-5)-methyl 45.8 16 0.00056 25.8 3.0 35 101-139 78-114 (159)
148 2co8_A NEDD9 interacting prote 45.7 21 0.00072 21.6 3.3 43 101-154 14-56 (82)
149 2fiy_A Protein FDHE homolog; F 45.6 2.3 7.7E-05 33.5 -1.7 50 100-149 180-231 (309)
150 2d8y_A Eplin protein; LIM doma 44.9 35 0.0012 20.9 4.3 41 102-153 15-55 (91)
151 2xjy_A Rhombotin-2; oncoprotei 44.9 22 0.00076 23.3 3.5 50 101-152 28-78 (131)
152 2a20_A Regulating synaptic mem 43.6 3.3 0.00011 24.3 -0.7 36 100-136 7-43 (62)
153 2kwj_A Zinc finger protein DPF 43.0 12 0.00042 24.5 1.9 33 104-136 3-41 (114)
154 2vnf_A ING 4, P29ING4, inhibit 43.0 7.9 0.00027 22.5 0.9 43 101-148 9-58 (60)
155 1g47_A Pinch protein; LIM doma 41.9 29 0.00098 20.4 3.4 43 102-154 11-53 (77)
156 2cu8_A Cysteine-rich protein 2 41.5 15 0.00051 21.7 2.0 40 103-153 10-49 (76)
157 2rsd_A E3 SUMO-protein ligase 40.9 2.6 8.8E-05 25.2 -1.6 45 102-148 10-64 (68)
158 2pv0_B DNA (cytosine-5)-methyl 40.7 21 0.00073 28.8 3.3 35 101-139 92-128 (386)
159 2jmo_A Parkin; IBR, E3 ligase, 37.8 2.9 9.9E-05 25.9 -1.8 14 123-136 55-68 (80)
160 3kqi_A GRC5, PHD finger protei 37.5 19 0.00066 21.6 2.1 48 102-150 10-62 (75)
161 2jne_A Hypothetical protein YF 36.1 18 0.00063 23.4 1.8 39 103-150 33-71 (101)
162 2dj7_A Actin-binding LIM prote 35.8 29 0.00099 20.9 2.7 39 102-151 15-53 (80)
163 3f6q_B LIM and senescent cell 35.6 18 0.00063 20.8 1.7 42 102-153 11-52 (72)
164 1x62_A C-terminal LIM domain p 35.6 23 0.00077 21.1 2.2 39 102-152 15-53 (79)
165 2csz_A Synaptotagmin-like prot 35.0 21 0.00074 21.9 2.0 34 100-133 23-57 (76)
166 1wyh_A SLIM 2, skeletal muscle 34.5 33 0.0011 19.8 2.8 40 103-152 6-45 (72)
167 1nyp_A Pinch protein; LIM doma 32.9 29 0.00098 19.7 2.3 38 103-152 6-43 (66)
168 2g6q_A Inhibitor of growth pro 32.6 15 0.00051 21.5 0.9 43 101-148 10-59 (62)
169 1x4l_A Skeletal muscle LIM-pro 31.7 45 0.0016 19.2 3.1 40 103-152 6-47 (72)
170 2d8z_A Four and A half LIM dom 31.6 30 0.001 19.9 2.2 37 103-151 6-42 (70)
171 1rut_X Flinc4, fusion protein 31.3 30 0.001 24.5 2.6 49 102-152 32-81 (188)
172 2lq6_A Bromodomain-containing 30.6 21 0.00072 22.4 1.4 33 102-135 17-50 (87)
173 2cor_A Pinch protein; LIM doma 30.6 61 0.0021 19.2 3.6 39 102-152 15-53 (79)
174 1iml_A CRIP, cysteine rich int 30.6 24 0.00082 20.8 1.7 43 101-148 26-69 (76)
175 1x63_A Skeletal muscle LIM-pro 30.6 29 0.00099 20.6 2.1 41 103-153 16-56 (82)
176 1x4k_A Skeletal muscle LIM-pro 30.2 24 0.00081 20.4 1.6 40 103-152 6-45 (72)
177 2d8x_A Protein pinch; LIM doma 30.2 27 0.00092 20.1 1.8 39 103-153 6-44 (70)
178 1a7i_A QCRP2 (LIM1); LIM domai 30.1 13 0.00046 22.3 0.4 40 103-153 8-47 (81)
179 2ct7_A Ring finger protein 31; 30.0 4.6 0.00016 25.2 -1.8 43 105-147 28-74 (86)
180 1l8d_A DNA double-strand break 28.4 13 0.00045 24.1 0.1 8 102-109 47-54 (112)
181 2xqn_T Testin, TESS; metal-bin 27.2 42 0.0014 21.8 2.6 46 102-152 30-75 (126)
182 1wig_A KIAA1808 protein; LIM d 26.4 60 0.0021 18.9 3.0 25 104-132 7-31 (73)
183 2lcq_A Putative toxin VAPC6; P 26.1 20 0.00069 24.9 0.8 23 122-150 136-158 (165)
184 3o7a_A PHD finger protein 13 v 26.0 14 0.00049 20.5 0.0 41 107-148 8-51 (52)
185 2kpi_A Uncharacterized protein 24.9 46 0.0016 19.0 2.1 15 101-115 9-23 (56)
186 2ctu_A Zinc finger protein 483 24.8 38 0.0013 18.8 1.8 18 101-118 17-34 (73)
187 1v6g_A Actin binding LIM prote 24.7 48 0.0017 19.6 2.3 37 103-151 16-52 (81)
188 1loi_A Cyclic 3',5'-AMP specif 24.6 4.6 0.00016 19.0 -1.9 12 127-138 6-17 (26)
189 2cup_A Skeletal muscle LIM-pro 24.4 47 0.0016 20.5 2.4 48 101-153 32-79 (101)
190 1x68_A FHL5 protein; four-and- 24.0 43 0.0015 19.6 2.0 39 103-151 6-46 (76)
191 2jrp_A Putative cytoplasmic pr 23.9 39 0.0013 21.0 1.7 17 142-158 53-69 (81)
192 2jyp_A Aragonite protein AP7; 23.4 24 0.00082 17.7 0.6 15 104-118 11-25 (36)
193 4g9i_A Hydrogenase maturation 22.7 33 0.0011 30.2 1.7 50 101-150 105-188 (772)
194 3kv4_A PHD finger protein 8; e 22.2 33 0.0011 28.2 1.5 48 105-152 7-59 (447)
195 2ehe_A Four and A half LIM dom 21.5 49 0.0017 19.6 1.9 40 103-152 16-55 (82)
196 2egq_A FHL1 protein; LIM domai 21.0 60 0.0021 18.9 2.2 41 103-153 16-59 (77)
197 2vrw_B P95VAV, VAV1, proto-onc 20.8 78 0.0027 25.0 3.4 36 100-135 355-391 (406)
198 2l4z_A DNA endonuclease RBBP8, 20.8 43 0.0015 22.0 1.6 39 102-151 61-99 (123)
199 1lv3_A Hypothetical protein YA 20.2 22 0.00076 21.4 0.1 12 140-151 9-20 (68)
200 2lvu_A Zinc finger and BTB dom 25.5 22 0.00075 15.2 0.0 8 143-150 5-12 (26)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.57 E-value=1.8e-15 Score=90.69 Aligned_cols=51 Identities=47% Similarity=0.998 Sum_probs=44.6
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 150 (162)
++...|+||++.+..+..+..++.|||.||..|+.+|++.+.+||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 345689999999988777766645999999999999999999999999876
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=3.4e-15 Score=95.78 Aligned_cols=58 Identities=34% Similarity=0.891 Sum_probs=49.4
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCCcc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLHFQ 158 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 158 (162)
.....|+||++.|..+..+..+ +|+|.||..||..|+..+.+||+||..+...++..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 3467899999999887766555 899999999999999999999999999977665543
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-15 Score=95.68 Aligned_cols=52 Identities=42% Similarity=0.955 Sum_probs=45.8
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
.+...|+||++.+..+..+..+ +|+|.||..||..|+..+.+||+||..+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3567899999999888776666 899999999999999999999999998854
No 4
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.53 E-value=3.9e-15 Score=93.63 Aligned_cols=58 Identities=29% Similarity=0.598 Sum_probs=47.2
Q ss_pred CCCccccccccccccc---cceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEMEKE---HEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~---~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (162)
++...|+||++.+..+ .....+++|||.||..||..|+..+.+||+||..+...++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence 4567899999999765 223344599999999999999999999999999997776543
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-15 Score=97.89 Aligned_cols=52 Identities=35% Similarity=0.871 Sum_probs=45.3
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
.+...|+||++.|..+..+..+ +|||.||..||..|+..+.+||+||..+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3457899999999887766666 899999999999999999999999998843
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=6.7e-15 Score=92.23 Aligned_cols=52 Identities=33% Similarity=0.917 Sum_probs=44.7
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
.....|+||++.+..+..+..+ +|||.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3457899999999877666555 899999999999999998999999998843
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.1e-15 Score=93.33 Aligned_cols=52 Identities=33% Similarity=0.848 Sum_probs=45.9
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
.....|+||++.+..+..+..+ +|+|.||..||..|++.+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4567899999999888777666 899999999999999988999999998854
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.50 E-value=8.1e-15 Score=87.74 Aligned_cols=51 Identities=25% Similarity=0.675 Sum_probs=43.1
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
+...|+||++.+..+.....+++|||.||..|+..|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 346799999999765544455699999999999999998899999999873
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.4e-15 Score=95.52 Aligned_cols=53 Identities=32% Similarity=0.748 Sum_probs=42.8
Q ss_pred CCcccccccccccc-----------ccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 101 DGIVCGVCQEEMEK-----------EHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 101 ~~~~C~IC~~~~~~-----------~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
++..|+||++.|.. +..++.+++|+|.||..||.+|+..+.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 34569999988854 334556657999999999999999999999999988544
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-14 Score=89.57 Aligned_cols=52 Identities=29% Similarity=0.618 Sum_probs=42.9
Q ss_pred CCCcccccccccccccc---ceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEH---EARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~---~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
.+...|+||++.+..+. ....+++|||.||..||..|+..+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 45678999999997652 22234599999999999999998999999999884
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.46 E-value=6.1e-14 Score=96.11 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=41.3
Q ss_pred Ccccccccccccccc--------------ceeEecCCCCccCHhhHHHHh-----cCCcccccccccccc
Q 046932 102 GIVCGVCQEEMEKEH--------------EARAIMECMHMFHDSCILKWL-----KINNTCPLCRATCKP 152 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~--------------~~~~l~~C~H~f~~~Ci~~wl-----~~~~~CP~Cr~~~~~ 152 (162)
+..|+||++.|..+. .+..+++|+|.||..||..|+ ..+.+||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999999997543 333456999999999999999 457799999998843
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.45 E-value=2.5e-14 Score=88.00 Aligned_cols=56 Identities=30% Similarity=0.621 Sum_probs=44.9
Q ss_pred CCcccccccccccccc---ceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCC
Q 046932 101 DGIVCGVCQEEMEKEH---EARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLH 156 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~---~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (162)
+...|+||++.+..+. ....+++|||.||..|+..|+..+.+||+||.++...++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 3468999999997642 2223349999999999999999999999999999766543
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.43 E-value=6.8e-14 Score=95.16 Aligned_cols=51 Identities=29% Similarity=0.559 Sum_probs=41.9
Q ss_pred CCcccccccccccccc--------------ceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEH--------------EARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~--------------~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
+...|+||++.|..+- ..+.+++|+|.||..||.+||..+.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4567999999997541 12344599999999999999999999999999863
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.1e-14 Score=88.07 Aligned_cols=55 Identities=27% Similarity=0.651 Sum_probs=45.2
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (162)
.+...|+||++.+..+. .+++|||.||..||..|+..+..||+||..+...++..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLIDAT---TITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSSCE---ECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHCcC---EECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 34578999999997542 33499999999999999988899999999997666543
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.7e-14 Score=87.09 Aligned_cols=53 Identities=26% Similarity=0.632 Sum_probs=44.3
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (162)
.+...|+||++.+.. ..+ +|||.||..|+..|+..+..||+||..+...+..+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 446789999999875 233 99999999999999999999999999997665443
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=84.78 Aligned_cols=52 Identities=27% Similarity=0.588 Sum_probs=43.4
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhc-CCccccccccccccCCC
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK-INNTCPLCRATCKPKKL 155 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 155 (162)
.+...|+||++.+..+..+ +|||.||..||..|+. ....||+||..+...++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQT----ECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCC----SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeEC----CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4567899999999866443 9999999999999995 46789999999966654
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=89.17 Aligned_cols=56 Identities=23% Similarity=0.592 Sum_probs=45.3
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCC---ccccccccccccCCC
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN---NTCPLCRATCKPKKL 155 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~---~~CP~Cr~~~~~~~~ 155 (162)
.+...|+||++.|........+++|||.||..|+..|+..+ ..||.||..+...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 45678999999998755433445999999999999999865 789999998866543
No 18
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=1.5e-13 Score=85.03 Aligned_cols=56 Identities=16% Similarity=0.401 Sum_probs=45.4
Q ss_pred Ccccccccc-ccccccceeEecCCCCccCHhhHHHHhcC-CccccccccccccCCCCc
Q 046932 102 GIVCGVCQE-EMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 102 ~~~C~IC~~-~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~ 157 (162)
...|+||++ .+..+.....+++|||.||..||..|+.. ...||.||.++...++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 457999999 78777654445599999999999999765 568999999997776644
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=6.6e-14 Score=88.26 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=42.7
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCC
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKK 154 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (162)
.+...|+||++.+..+ +.+ +|||.||..||..|+..+..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSL-PCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCC---EEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 3457899999998654 233 89999999999999999999999999986544
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=85.51 Aligned_cols=53 Identities=25% Similarity=0.624 Sum_probs=42.8
Q ss_pred CCCCccccccccccccccceeEecCCCCccCHhhHHHHhc---CCccccccccccccCCC
Q 046932 99 GEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK---INNTCPLCRATCKPKKL 155 (162)
Q Consensus 99 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~---~~~~CP~Cr~~~~~~~~ 155 (162)
..+...|+||++.+..+. .+ +|||.||..|+..|+. ....||+||..+...++
T Consensus 17 ~~~~~~C~IC~~~~~~~~---~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPV---TI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEE---EC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeE---Ec-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 345678999999997542 23 9999999999999997 35689999999966554
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.38 E-value=9.6e-13 Score=93.28 Aligned_cols=47 Identities=34% Similarity=0.843 Sum_probs=40.5
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
..|+||++.|..+. .+ +|||.||..||..|+..+.+||+||.++...
T Consensus 54 ~~C~iC~~~~~~~~---~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIEAV---TL-NCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSSEE---EE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCcccCcccCCce---EC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 57999999997552 33 9999999999999999999999999988543
No 22
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=2.3e-13 Score=87.08 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=44.1
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcC-CccccccccccccCCCC
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCKPKKLH 156 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~ 156 (162)
.+...|+||++.|..+.. + +|||.||..||..|+.. +.+||.||.++...++.
T Consensus 6 ~~~~~C~IC~~~~~~Pv~---~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVI---V-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp SSSSSCTTTSCCCSSEEE---E-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred cccCCCCCccccccCCEE---c-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 346789999999986633 2 89999999999999987 78999999998665544
No 23
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=87.38 Aligned_cols=54 Identities=22% Similarity=0.557 Sum_probs=44.3
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcC-------CccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-------NNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-------~~~CP~Cr~~~~~~~~~~ 157 (162)
.+...|+||++.+..+..+ +|||.||..|+..|+.. ...||.||..+...++..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSL----DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCEETTTTEECSSCCCC----SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred ccCCCCcCCCcccCCeeEC----CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 4567899999999766432 89999999999999986 568999999987655443
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.36 E-value=2.6e-13 Score=86.22 Aligned_cols=52 Identities=27% Similarity=0.577 Sum_probs=41.9
Q ss_pred CCCccccccccccccccceeEecC-CCCccCHhhHHHHhcCC--ccccccccccccCCC
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIME-CMHMFHDSCILKWLKIN--NTCPLCRATCKPKKL 155 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~-C~H~f~~~Ci~~wl~~~--~~CP~Cr~~~~~~~~ 155 (162)
.+...|+||++.|..+.. + + |||.||..||..|+..+ ..||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVV---I-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CGGGSCSSSCCCCTTCEE---C-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCcCCChHHhCCeE---c-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 345789999999986533 3 7 99999999999999764 689999998655443
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.35 E-value=2.1e-13 Score=91.60 Aligned_cols=52 Identities=29% Similarity=0.648 Sum_probs=43.1
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCC-ccccccccccccCCCC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN-NTCPLCRATCKPKKLH 156 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~-~~CP~Cr~~~~~~~~~ 156 (162)
...|+||++.|..+. .+++|||.||..||..|+..+ ..||.||.++...++.
T Consensus 22 ~~~C~IC~~~~~~p~---~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 22 VFRCFICMEKLRDAR---LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCccCCccccCcc---ccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 367999999997543 214999999999999999887 6999999999766654
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=5.3e-13 Score=93.11 Aligned_cols=55 Identities=29% Similarity=0.616 Sum_probs=45.2
Q ss_pred CCccccccccccccc---cceeEecCCCCccCHhhHHHHhcCCccccccccccccCCC
Q 046932 101 DGIVCGVCQEEMEKE---HEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKL 155 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~---~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 155 (162)
+...|+||++.|..+ ....++++|||.||..||..|+..+.+||+||..+...++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 457899999999765 2222344999999999999999999999999999866554
No 27
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.4e-13 Score=95.08 Aligned_cols=51 Identities=29% Similarity=0.559 Sum_probs=0.8
Q ss_pred CCcccccccccccccc--------------ceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEH--------------EARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~--------------~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
....|+||++.|..+. ..+.+++|+|.||..||.+||..+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3468999999997531 12233589999999999999999999999999874
No 28
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.33 E-value=2.8e-13 Score=84.44 Aligned_cols=48 Identities=31% Similarity=0.834 Sum_probs=40.4
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
....|+||++.+..+ . ..++|||.||..|+..|+..+.+||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~--~-~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--S-MALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--E-EETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--c-EecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 346799999998643 2 33499999999999999998999999999874
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=8.3e-13 Score=85.36 Aligned_cols=54 Identities=24% Similarity=0.591 Sum_probs=44.2
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcC------CccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI------NNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~------~~~CP~Cr~~~~~~~~~~ 157 (162)
.+...|+||++.+..+. +++|||.||..|+..|+.. ...||.||..+...++..
T Consensus 17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp CTTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEE
T ss_pred ccCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCc
Confidence 45678999999997653 2389999999999999987 678999999987665443
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6e-13 Score=85.86 Aligned_cols=48 Identities=23% Similarity=0.639 Sum_probs=41.3
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
.....|+||++.+..+. +++|||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPV----VTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEE----ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCee----EccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 44678999999997653 2499999999999999988899999999884
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=84.46 Aligned_cols=55 Identities=24% Similarity=0.690 Sum_probs=44.9
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcC------CccccccccccccCCCCcc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI------NNTCPLCRATCKPKKLHFQ 158 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~------~~~CP~Cr~~~~~~~~~~~ 158 (162)
.+...|+||++.+..+..+ +|||.||..|+..|+.. ...||.||..+...++..+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSL----DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCC----SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred cCCCCCCCCCcccCCceeC----CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 4567899999999765332 89999999999999976 6789999999976665433
No 32
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.32 E-value=2.2e-12 Score=82.99 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=45.2
Q ss_pred CCCCccccccccccccccceeEecCCCCccCHhhHHHHhcC-CccccccccccccCCCCccc
Q 046932 99 GEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCKPKKLHFQE 159 (162)
Q Consensus 99 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~~ 159 (162)
..+...|+||++.+........-.+|||.||..|+..++.. ...||.||.++....+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~ 69 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhcc
Confidence 34567899999988643322111149999999999998754 67899999999877766543
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=6.7e-13 Score=88.78 Aligned_cols=52 Identities=31% Similarity=0.665 Sum_probs=43.2
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLH 156 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (162)
...|+||++.+..+. .+++|||.||..||..|+..+..||.||..+...++.
T Consensus 22 ~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 73 (99)
T 2y43_A 22 LLRCGICFEYFNIAM---IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLK 73 (99)
T ss_dssp HTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE
T ss_pred CCCcccCChhhCCcC---EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCC
Confidence 468999999997542 2248999999999999999999999999998665543
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=85.98 Aligned_cols=47 Identities=30% Similarity=0.657 Sum_probs=39.5
Q ss_pred CCCccccccccccccccceeEecC-CCCccCHhhHHHHhcC--Ccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIME-CMHMFHDSCILKWLKI--NNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~-C~H~f~~~Ci~~wl~~--~~~CP~Cr~~~ 150 (162)
.+...|+||++.|..+.. + + |||.||..||..|+.. ...||.||..+
T Consensus 11 ~~~~~C~IC~~~~~~p~~---~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVV---I-PCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEE---C-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceE---C-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 456899999999986632 3 7 9999999999999964 46899999987
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=90.13 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=39.7
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCC-cccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN-NTCPLCRATCKP 152 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~-~~CP~Cr~~~~~ 152 (162)
...|+||++.|..+.. + +|||.||..||..|+..+ ..||.||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPIT---T-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEE---C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEE---e-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4689999999986533 3 999999999999999864 499999999965
No 36
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.5e-12 Score=82.37 Aligned_cols=52 Identities=25% Similarity=0.671 Sum_probs=42.2
Q ss_pred CCCCccccccccccccccceeEecCCC-----CccCHhhHHHHhcCC--cccccccccccc
Q 046932 99 GEDGIVCGVCQEEMEKEHEARAIMECM-----HMFHDSCILKWLKIN--NTCPLCRATCKP 152 (162)
Q Consensus 99 ~~~~~~C~IC~~~~~~~~~~~~l~~C~-----H~f~~~Ci~~wl~~~--~~CP~Cr~~~~~ 152 (162)
..+...|.||++.+..+..+ . +||+ |.||..||.+|+..+ .+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~-~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-I-TPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-E-CSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCee-E-eccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999999766655 3 4896 999999999999875 589999998843
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.2e-12 Score=77.50 Aligned_cols=44 Identities=30% Similarity=0.670 Sum_probs=36.3
Q ss_pred CCCCccccccccccccccceeEecCCCCccCHhhHHHHhc---CCcccccc
Q 046932 99 GEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK---INNTCPLC 146 (162)
Q Consensus 99 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~---~~~~CP~C 146 (162)
..+...|+||++.+..+.. + +|||.||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVT---I-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEE---C-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEE---e-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999976532 3 9999999999999997 45689998
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=4.6e-12 Score=86.20 Aligned_cols=50 Identities=30% Similarity=0.785 Sum_probs=41.6
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCc---cccccccccccCCCC
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINN---TCPLCRATCKPKKLH 156 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~---~CP~Cr~~~~~~~~~ 156 (162)
..|+||++.+..+..+ +|||.||..||..|+..+. .||.||..+...++.
T Consensus 22 ~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 22 LECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp TSCSSSCCCCSSCCBC----TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCcccChhhcCeEEC----CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 5799999999766433 9999999999999998653 899999998766554
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.23 E-value=3e-12 Score=86.95 Aligned_cols=50 Identities=26% Similarity=0.783 Sum_probs=42.0
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
+...|+||++.+..+. .+++|||.||..||..|+..+..||.||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcC---EeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4578999999997542 2349999999999999999999999999998643
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.7e-12 Score=74.80 Aligned_cols=43 Identities=33% Similarity=0.839 Sum_probs=35.6
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhc---CCcccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK---INNTCPLC 146 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~---~~~~CP~C 146 (162)
.+...|+||++.+..+.. ++|||.||..||..|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI----IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC----CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEe----CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456789999999987633 38999999999999954 56789998
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=2.1e-12 Score=90.06 Aligned_cols=57 Identities=30% Similarity=0.631 Sum_probs=46.2
Q ss_pred CCCccccccccccccc---cceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCC
Q 046932 100 EDGIVCGVCQEEMEKE---HEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLH 156 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~---~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (162)
++...|+||++.+..+ ......++|||.||..||.+|+..+++||+||.++...++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcce
Confidence 4567899999999754 12223449999999999999999999999999999776653
No 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=78.93 Aligned_cols=49 Identities=20% Similarity=0.590 Sum_probs=41.8
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCC--ccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN--NTCPLCRATCK 151 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~--~~CP~Cr~~~~ 151 (162)
+....|+||++.+..+.... .|+|.||..||.+||+.+ .+||+||..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 44578999999998665443 899999999999999887 89999999884
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.21 E-value=5.2e-12 Score=82.44 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=45.6
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (162)
.+.+.|+||++.|..|..+ +|||+||+.||..|+..+.+||.|+.++...++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRL----PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred chheECcccCchhcCCeEC----CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 3568899999999877443 89999999999999998889999999987665543
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.20 E-value=5.3e-12 Score=84.86 Aligned_cols=54 Identities=20% Similarity=0.122 Sum_probs=46.2
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (162)
.+.+.|+||++.|..|..+ +|||+||+.||..|+..+.+||.|+.++...++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRL----PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp STTTBCTTTCSBCSSEEEE----TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEE
T ss_pred cHhhCCcCccCcccCCeEC----CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceE
Confidence 3568999999999877444 89999999999999998899999999997666543
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.20 E-value=1.2e-11 Score=82.79 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=46.0
Q ss_pred CCCccccccccccccccceeEecCCC-CccCHhhHHHHhcCCccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECM-HMFHDSCILKWLKINNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~-H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (162)
.+.+.|+||++.|..|+.+ +|| |+||+.||..|+..+.+||.||.++...++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~----~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL----PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccccCCeEC----CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 3568899999999877443 899 99999999999998889999999997666543
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.18 E-value=5.8e-12 Score=86.89 Aligned_cols=53 Identities=23% Similarity=0.487 Sum_probs=43.3
Q ss_pred CCCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCc-cccccccccccCCC
Q 046932 99 GEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINN-TCPLCRATCKPKKL 155 (162)
Q Consensus 99 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~-~CP~Cr~~~~~~~~ 155 (162)
..+...|+||++.+..+. . ++|||.||..||..|+.... +||+||.++...++
T Consensus 15 ~~~~~~C~IC~~~~~~p~---~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 15 LESKYECPICLMALREAV---Q-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (118)
T ss_dssp CCGGGBCTTTCSBCSSEE---E-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcCChhhcCeE---E-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence 345678999999997662 2 38999999999999998754 99999999866544
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=89.14 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=40.7
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCc-cccccccccccC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINN-TCPLCRATCKPK 153 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~-~CP~Cr~~~~~~ 153 (162)
...|+||++.|..+.. ++|||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVT----TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEE----CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEE----cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4689999999976533 39999999999999998754 899999999655
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.15 E-value=1.1e-11 Score=85.03 Aligned_cols=51 Identities=37% Similarity=0.896 Sum_probs=42.8
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcC-CccccccccccccCCCC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCKPKKLH 156 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~ 156 (162)
...|+||++.+..+.. ++|||.||..||..|+.. ...||+||.++...++.
T Consensus 23 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 23 SISCQICEHILADPVE----TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HTBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCcHhcCcEE----cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 4689999999976533 399999999999999986 77999999998766643
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.14 E-value=3.9e-12 Score=87.23 Aligned_cols=47 Identities=23% Similarity=0.640 Sum_probs=39.9
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcC-Cccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~ 151 (162)
+...|+||++.+..+.. + +|||.||..||..|+.. ...||.||..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVT---L-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEE---C-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeE---c-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 35789999999975533 3 99999999999999977 678999999885
No 50
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=1.4e-11 Score=89.56 Aligned_cols=48 Identities=29% Similarity=0.785 Sum_probs=40.4
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcC-Ccccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCKP 152 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~ 152 (162)
...|+||++.|..+ + .+++|||.||..||..|+.. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--M-TTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--E-EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--C-EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 46899999999754 2 33499999999999999987 7889999998843
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.6e-11 Score=83.49 Aligned_cols=51 Identities=20% Similarity=0.529 Sum_probs=41.6
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCCc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (162)
...|+||++.|..+..+ .+|||.||..||..|+. ..||+||..+...++..
T Consensus 22 ~~~C~IC~~~~~~pv~~---~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCL---GGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp TTSCSSSCSCCSSCBCC---CSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred CCCCCCCChHhhCccEe---CCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence 46799999999765332 28999999999999987 78999999986655543
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.09 E-value=2.7e-11 Score=86.19 Aligned_cols=49 Identities=18% Similarity=0.512 Sum_probs=40.7
Q ss_pred CCCCccccccccccccccceeEecCCCCccCHhhHHHHhcCC-ccccccccccc
Q 046932 99 GEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN-NTCPLCRATCK 151 (162)
Q Consensus 99 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~-~~CP~Cr~~~~ 151 (162)
..+...|+||++.+..+.. ++|||.||..||..|+... ..||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~pv~----~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQ----AQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCcEE----CCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3456899999999987633 3999999999999999865 48999999763
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=5.1e-11 Score=71.60 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=38.0
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
.+...|+||++.|..+..+ +|||.||..|+..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL----PCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS----TTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEc----CCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 3567899999999876333 89999999998874 66899999988543
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.01 E-value=9e-11 Score=72.46 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=39.3
Q ss_pred CCccccccccccccccceeEecCCCCc-cCHhhHHHHhcCCccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHM-FHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
+...|.||++.+... +....||||. ||..|+..|+..+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 345799999987533 2212389999 899999999988889999999883
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=7.3e-11 Score=78.28 Aligned_cols=53 Identities=26% Similarity=0.613 Sum_probs=41.0
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCC------ccccc--cccc-cccCCCC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN------NTCPL--CRAT-CKPKKLH 156 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~------~~CP~--Cr~~-~~~~~~~ 156 (162)
..+.|+||++.|..|..+ ..|||+||+.||..|+..+ .+||+ |+.. +...++.
T Consensus 6 ~~~~CPI~~~~~~dPV~~---~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKN---KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SCCBCTTTCSBCSSEEEE---SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE
T ss_pred cEeECcCcCchhcCCEEc---CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc
Confidence 457899999999876433 1499999999999999764 48999 9866 6544443
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.00 E-value=1.4e-10 Score=94.60 Aligned_cols=49 Identities=29% Similarity=0.714 Sum_probs=41.0
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhc-CCccccccccccccCC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK-INNTCPLCRATCKPKK 154 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 154 (162)
...|+||++.+..+ ++++|||.||..|+..|+. .+.+||+||.++....
T Consensus 332 ~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 36899999998644 2339999999999999998 6889999999986544
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.00 E-value=9.5e-11 Score=91.07 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=44.7
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcC-CccccccccccccCCCCcc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCKPKKLHFQ 158 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~ 158 (162)
.....|+||++.|..|+.+ +|||+||+.||..|+.. +.+||+||.++...++..+
T Consensus 206 ~~~~~c~i~~~~~~dPv~~----~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CSTTBCTTTCSBCSSEEEC----SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CcccCCcCcCCHhcCCeEC----CCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 3567899999999877443 89999999999999976 4559999999976665433
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.97 E-value=1.8e-10 Score=70.86 Aligned_cols=48 Identities=17% Similarity=0.377 Sum_probs=38.9
Q ss_pred CccccccccccccccceeEecCCCCc-cCHhhHHHHhcCCccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHM-FHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
...|.||++..... +...+||||. ||..|+..|...+..||+||.++.
T Consensus 7 ~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 35799999987533 2223499998 999999999988889999999883
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.95 E-value=1.7e-10 Score=84.15 Aligned_cols=53 Identities=23% Similarity=0.504 Sum_probs=43.3
Q ss_pred CCCCccccccccccccccceeEecCCCCccCHhhHHHHhcCC-ccccccccccccCCC
Q 046932 99 GEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN-NTCPLCRATCKPKKL 155 (162)
Q Consensus 99 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~-~~CP~Cr~~~~~~~~ 155 (162)
..+.+.|+||++.+..+.. ++|||.||..||..|+... ..||.||.++...++
T Consensus 15 ~~~~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQ----TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCCChhhcCcEE----CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 3456899999999986632 3899999999999999764 499999999866543
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.90 E-value=3.7e-10 Score=71.57 Aligned_cols=42 Identities=19% Similarity=0.522 Sum_probs=35.1
Q ss_pred ccccccccccccccceeEecCCCCc-cCHhhHHHHhcCCcccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHM-FHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
..|+||++.+..+ ..+ +|||. ||..|+..| ..||+||.++..
T Consensus 25 ~~C~iC~~~~~~~---~~~-pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIAI---VFV-PCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCCE---EEE-TTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCE---EEc-CCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 5799999998643 233 99999 999999998 789999998843
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.89 E-value=4e-10 Score=83.05 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcC-CccccccccccccCCCCcc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCKPKKLHFQ 158 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~ 158 (162)
+.+.|+||++.|..|+.+ +|||+||+.||..|+.. +.+||.|+.++...++..+
T Consensus 105 ~~f~CPI~~elm~DPV~~----~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 105 DYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp GGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred HhhcccCccccCCCCeEC----CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 457899999999876433 99999999999999976 4579999999876665443
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.86 E-value=5.1e-10 Score=89.61 Aligned_cols=52 Identities=23% Similarity=0.627 Sum_probs=40.2
Q ss_pred CCCcccccccccccccccee----EecCCCCccCHhhHHHHhcCC-----------ccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEAR----AIMECMHMFHDSCILKWLKIN-----------NTCPLCRATCK 151 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~----~l~~C~H~f~~~Ci~~wl~~~-----------~~CP~Cr~~~~ 151 (162)
+...+|+||++.+.....+. ..+.|+|.||..|+.+||+.. .+||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999987622221 224899999999999999752 47999999884
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.78 E-value=2e-09 Score=83.39 Aligned_cols=54 Identities=19% Similarity=0.393 Sum_probs=44.0
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCC--ccccc--cccccccCCCCc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN--NTCPL--CRATCKPKKLHF 157 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~--~~CP~--Cr~~~~~~~~~~ 157 (162)
....|+||++.|..|... ..|||.||+.||..|+..+ ..||+ |+..+...++..
T Consensus 180 ~el~CPIcl~~f~DPVts---~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 180 IELTCPITCKPYEAPLIS---RKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CCSBCTTTSSBCSSEEEE---SSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred eeeECcCccCcccCCeee---CCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 467899999999866432 2899999999999999763 58999 999887666543
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1.2e-09 Score=72.21 Aligned_cols=52 Identities=21% Similarity=0.576 Sum_probs=40.2
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcC--------Cccccc--cccc--cccC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI--------NNTCPL--CRAT--CKPK 153 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~--------~~~CP~--Cr~~--~~~~ 153 (162)
+..+|+||++.+..+..+ .+.+|||.||..|+..++.. ...||. |+.. +.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 356899999998766544 34479999999999998863 247999 9988 6443
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.7e-09 Score=66.50 Aligned_cols=42 Identities=19% Similarity=0.498 Sum_probs=34.1
Q ss_pred ccccccccccccccceeEecCCCCc-cCHhhHHHHhcCCcccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHM-FHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
..|+||++.+..+.. ++|||. ||..|+... ..||+||.++..
T Consensus 26 ~~C~IC~~~~~~~~~----~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAIVF----VPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCBCC----SSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCEEE----ecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 469999999865433 399999 999999653 689999999854
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.59 E-value=1.1e-08 Score=65.65 Aligned_cols=42 Identities=31% Similarity=0.704 Sum_probs=33.8
Q ss_pred ccccccccccccccceeEecCCCCc-cCHhhHHHHhcCCcccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHM-FHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
..|+||++.+... ..+ ||||. ||..|+..|. .||+||.++..
T Consensus 19 ~~C~IC~~~~~~~---v~~-pCgH~~~C~~C~~~~~----~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEINS---TFC-PCGHTVCCESCAAQLQ----SCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBCCE---EEE-TTCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred CEeEEeCcccCcE---EEE-CCCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence 4799999987533 233 99999 9999998873 89999998854
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.59 E-value=1.2e-08 Score=62.20 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=44.0
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCCCcc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKLHFQ 158 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 158 (162)
+.|+||++.+..+ + ...++||.|.+.||.+|+..+.+||+.+.++...++.-+
T Consensus 4 ~~CpIs~~~m~dP--V-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRP--V-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSE--E-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCC--E-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 5799999999866 2 222799999999999999988889999999977776443
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.3e-08 Score=62.23 Aligned_cols=45 Identities=29% Similarity=0.687 Sum_probs=35.3
Q ss_pred CCCccccccccccccccceeEecCCCCc-cCHhhHHHHhcCCcccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHM-FHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
.+...|.||++.... + +++||||. ||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~---~-v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---W-VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---C-EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---E-EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 345689999998643 3 34499999 99999985 4689999998844
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.55 E-value=5e-08 Score=59.28 Aligned_cols=48 Identities=38% Similarity=0.795 Sum_probs=36.3
Q ss_pred CCCccccccccccccccceeEecCCC--C---ccCHhhHHHHhcC--Cccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECM--H---MFHDSCILKWLKI--NNTCPLCRATCK 151 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~--H---~f~~~Ci~~wl~~--~~~CP~Cr~~~~ 151 (162)
++...|.||++.... .. . .||. + .||..|+.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~-~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-F-RACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC--CC-C-CSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC--ce-e-cCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455689999987432 23 2 3765 4 8999999999975 678999998773
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.51 E-value=2.1e-08 Score=80.93 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=36.0
Q ss_pred CCccccccccccccccceeEecCCCCc-cCHhhHHHHhcCCccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHM-FHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
+...|+||++.+..+ +.+ ||||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~~---v~l-pCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFI-PCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEE-TTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEc-CCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 457899999998644 233 99999 999999988 67999999884
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.25 E-value=6.8e-07 Score=59.14 Aligned_cols=45 Identities=27% Similarity=0.622 Sum_probs=35.9
Q ss_pred cccccccccccccceeEecCCCCccCHhhHHHHhcC-Cccccccccccc
Q 046932 104 VCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-NNTCPLCRATCK 151 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~ 151 (162)
.|.+|--++. ...+.+ ||.|.||..|+..|.+. .++||.|+.+|.
T Consensus 3 fC~~C~~Pi~--iygRmI-PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMI-PCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEE-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeec-cccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5888888875 333334 99999999999999854 789999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.15 E-value=1.9e-06 Score=66.14 Aligned_cols=50 Identities=20% Similarity=0.561 Sum_probs=41.3
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCC--ccccccccccccC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN--NTCPLCRATCKPK 153 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~--~~CP~Cr~~~~~~ 153 (162)
....|.||.+....+..+. .|+|.||..|+..|++.+ ..||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4578999999998765552 599999999999999874 4899999988544
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.88 E-value=0.00066 Score=44.18 Aligned_cols=51 Identities=29% Similarity=0.613 Sum_probs=41.4
Q ss_pred CCccccccccccccccceeEecCC-CCccCHhhHHHHhcCCccccccccccccCCCCcc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMEC-MHMFHDSCILKWLKINNTCPLCRATCKPKKLHFQ 158 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C-~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 158 (162)
....|..|+-... .++ .| .|.+|..|+.-.|..+..||+|..++ ++++.+.
T Consensus 27 G~~nCKsCWf~~k---~LV---~C~dHYLCl~CLtlmL~~SdrCpIC~~pL-Ptkl~~~ 78 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLV---ECNNHYLCLNCLTLLLSVSNRCPICKMPL-PTKLRPS 78 (99)
T ss_dssp CCCCCCSSCSCCS---SEE---ECSSCEEEHHHHHHTCSSSSEETTTTEEC-CCCSCTT
T ss_pred CcccChhhccccC---Cee---eecchhhHHHHHHHHHhhccCCcccCCcC-CcceecC
Confidence 3568999997753 332 45 79999999999999999999999999 7777654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.59 E-value=0.0064 Score=39.77 Aligned_cols=35 Identities=14% Similarity=0.567 Sum_probs=24.7
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHH-Hh
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILK-WL 137 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~-wl 137 (162)
+..|+||.+.+..+. +..-+.|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~a-v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDA-VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBC-CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCc-eEECCcCChHHhHHHCHHHhc
Confidence 467999997643222 222248999999999998 53
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.34 E-value=0.087 Score=31.96 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=33.9
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCC----cccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN----NTCPLCRATCKP 152 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~~~~~ 152 (162)
...|.||.+. ..++.--.|...||..|+.+.+... =.||.|.....+
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 4579999753 3344445799999999998877653 269999875533
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.43 E-value=0.12 Score=30.86 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=33.6
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhc-----CCcccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK-----INNTCPLCRA 148 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~-----~~~~CP~Cr~ 148 (162)
++...|+||...+......+.--.|..-||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 455679999988754444444457888999999853211 2457999975
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.21 E-value=0.18 Score=45.45 Aligned_cols=54 Identities=17% Similarity=0.066 Sum_probs=44.7
Q ss_pred CCccccccccccccccceeEecCCC-CccCHhhHHHHhcCCccccccccccccCCCCcc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECM-HMFHDSCILKWLKINNTCPLCRATCKPKKLHFQ 158 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~-H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 158 (162)
+...|+|-.+.+..|+.+ +-| ++|-+..|.+|+..+.+||.=|.++...++..+
T Consensus 890 ~~F~cPIs~~lM~DPVil----psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVIL----PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp GGGBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred HHhCCcchhhHHhCCeEc----CCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 457899999999877444 887 699999999999999999999999876665443
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.52 E-value=0.38 Score=28.43 Aligned_cols=45 Identities=24% Similarity=0.519 Sum_probs=31.7
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcC----Ccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI----NNTCPLCRA 148 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~ 148 (162)
.....|.+|... ..+..-..|...||..|+..-+.. .=.||.|..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445679999873 334444578899999999875543 236999965
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.24 E-value=0.54 Score=29.58 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=29.4
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcC
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI 139 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~ 139 (162)
...+.|.+|.+.++...-+..-..=.|.||-.|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4567899999999876655211112799999999988865
No 80
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=85.09 E-value=0.18 Score=34.33 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRAT 149 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~ 149 (162)
....|..|...|..-..-...-.||..||..|........+.|-.|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3457999999986443332334899999999977655557778888653
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.79 E-value=0.99 Score=28.64 Aligned_cols=34 Identities=26% Similarity=0.601 Sum_probs=21.7
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHH
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKW 136 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~w 136 (162)
.+..|.||-.--. .....-. -|+-.||..|+.+-
T Consensus 14 ~D~~C~VC~~~t~-~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTA-ESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCS-SCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCcccCccccccc-cceeccc-cccccccHhhcccc
Confidence 3467999974332 1111111 58999999999985
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.33 E-value=0.32 Score=28.80 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=31.3
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcC----Ccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI----NNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 150 (162)
.....|.||... ..++.--.|...||..|+.+-+.. .=.||.|+...
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345679999863 233333478899999999865443 22599997643
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.74 E-value=0.32 Score=35.87 Aligned_cols=46 Identities=26% Similarity=0.506 Sum_probs=32.2
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCC----cccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN----NTCPLCRATC 150 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~~~ 150 (162)
....|.+|... ..+...-.|...||..|+.+-+... =.||.|+..-
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34679999854 2344445789999999997765442 2699998643
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.68 E-value=0.38 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=34.0
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcC----Cccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI----NNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~~ 151 (162)
+...|.||..... +...+..-.|..-||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999987753 3334444578899999998754332 336999987764
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.51 E-value=0.26 Score=28.56 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=30.7
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCC----cccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN----NTCPLCRA 148 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~ 148 (162)
.....|.+|... ..++.-..|...||..|+.+-+... =.||.|..
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 445679999874 2343445789999999998655432 25888854
No 86
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=82.75 E-value=0.94 Score=28.92 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=33.6
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhc------CCcccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK------INNTCPLCRATC 150 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~------~~~~CP~Cr~~~ 150 (162)
+...|.+|...|..-..-...-.||+.||..|...... ..+.|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 44679999999874433333348999999999876432 135677776544
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.73 E-value=0.4 Score=34.62 Aligned_cols=45 Identities=31% Similarity=0.532 Sum_probs=31.5
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCC----cccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN----NTCPLCRATC 150 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~~~ 150 (162)
+..|.+|... ..+.....|...||..|+.+-+... =.||.|+..-
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3569999854 2344445789999999987765442 2599998644
No 88
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=82.58 E-value=1.4 Score=27.65 Aligned_cols=54 Identities=15% Similarity=0.326 Sum_probs=35.4
Q ss_pred CCCCCccccccccccccccceeEecCCCCccCHhhHHHHhc--------CCccccccccccc
Q 046932 98 DGEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK--------INNTCPLCRATCK 151 (162)
Q Consensus 98 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~--------~~~~CP~Cr~~~~ 151 (162)
.+.+...|.+|...|..-..-..--.||..||..|...... ..+.|-.|-..+.
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 34456789999999975433222337999999999765421 1346777765553
No 89
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=82.31 E-value=0.69 Score=29.48 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=36.2
Q ss_pred CCCcccccccccc-ccccceeEecCCCCccCHhhHHHHhcC--CccccccccccccCCCCc
Q 046932 100 EDGIVCGVCQEEM-EKEHEARAIMECMHMFHDSCILKWLKI--NNTCPLCRATCKPKKLHF 157 (162)
Q Consensus 100 ~~~~~C~IC~~~~-~~~~~~~~l~~C~H~f~~~Ci~~wl~~--~~~CP~Cr~~~~~~~~~~ 157 (162)
++...|.||...- .....++....|.-.||..|+..-+.. .=.||.|........+..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~~~ 83 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPALEH 83 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC---
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhhhh
Confidence 3456899998753 222344444578889999999753221 235999987665555443
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.28 E-value=1 Score=27.05 Aligned_cols=33 Identities=27% Similarity=0.688 Sum_probs=25.8
Q ss_pred CCccccccccccccccceeEec-CCCCccCHhhH
Q 046932 101 DGIVCGVCQEEMEKEHEARAIM-ECMHMFHDSCI 133 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~-~C~H~f~~~Ci 133 (162)
....|.+|...+......+..- .|.--||..|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3457999999987776666666 78899999998
No 91
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=81.63 E-value=1.2 Score=27.79 Aligned_cols=52 Identities=19% Similarity=0.491 Sum_probs=34.1
Q ss_pred CCCCccccccccccccccceeEecCCCCccCHhhHHHHhc------CCcccccccccc
Q 046932 99 GEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK------INNTCPLCRATC 150 (162)
Q Consensus 99 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~------~~~~CP~Cr~~~ 150 (162)
+.+...|.+|...|..-..-..--.||..||..|....+. ..+.|-.|-..+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 3455689999999975433223337999999999765431 134577775544
No 92
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.30 E-value=4.2 Score=27.48 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHH
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKW 136 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~w 136 (162)
+...|.+|...|..-..-...-.||+.||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 446799999999744332233389999999997654
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.10 E-value=0.7 Score=26.02 Aligned_cols=44 Identities=30% Similarity=0.546 Sum_probs=28.6
Q ss_pred cccccccccccccceeEecCCCCccCHhhHHHHhcCC----cccccccc
Q 046932 104 VCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN----NTCPLCRA 148 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~ 148 (162)
.|.||...-.. ..++.-..|...||..|+.+=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888865432 2333445789999999997544332 25999864
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=80.97 E-value=0.33 Score=28.52 Aligned_cols=46 Identities=24% Similarity=0.516 Sum_probs=31.8
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcC----Ccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI----NNTCPLCRATC 150 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 150 (162)
.+..|.+|... ..++.-..|...||..|+.+-+.. .=.||.|....
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 34579999874 234344578999999999865543 22599997655
No 95
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.71 E-value=1.7 Score=27.22 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCCCccccccccccccccceeEecCCCCccCHhhHHH
Q 046932 98 DGEDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILK 135 (162)
Q Consensus 98 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~ 135 (162)
.+.+...|.+|...|..-..-..--.||..||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34455689999999864432222237999999999754
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=79.35 E-value=0.49 Score=28.40 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=31.1
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcC----Cccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI----NNTCPLCRAT 149 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~ 149 (162)
.+..|.||... ..++.-..|...||..|+.+-+.. .=.||.|...
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45679999864 234344578899999999865443 2259999753
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.17 E-value=2.4 Score=26.16 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHH---h--cCCccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKW---L--KINNTCPLCRATCK 151 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~w---l--~~~~~CP~Cr~~~~ 151 (162)
....| ||..........+..-.|..-||..|+.-- . ...-.||.|+..-.
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34567 898887534444444578889999998411 1 13557999987553
No 98
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=75.92 E-value=1.9 Score=24.39 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=28.1
Q ss_pred cccccccccccccceeEec-CCCCccCHhhHHHH----hcCCccccccc
Q 046932 104 VCGVCQEEMEKEHEARAIM-ECMHMFHDSCILKW----LKINNTCPLCR 147 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~-~C~H~f~~~Ci~~w----l~~~~~CP~Cr 147 (162)
.|.+|...+..+...+.-- .|..-||..|+.-- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888876555555444 57778999997421 12455688875
No 99
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=75.79 E-value=1.6 Score=30.10 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCccccccccccc-cccceeEecCCCCccCHhhHHHHhcC----Ccccccccc
Q 046932 101 DGIVCGVCQEEME-KEHEARAIMECMHMFHDSCILKWLKI----NNTCPLCRA 148 (162)
Q Consensus 101 ~~~~C~IC~~~~~-~~~~~~~l~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~ 148 (162)
....|.+|...|. ....-.....|.|.+|..|-..-... .=.|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4568999999993 33333344589999999996532111 114777764
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.96 E-value=0.98 Score=29.95 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=29.4
Q ss_pred cccccccccccccceeEecCCCCccCHhhHHHHhcCC----cccccccc
Q 046932 104 VCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN----NTCPLCRA 148 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~ 148 (162)
.|.||...-..+..+..--.|...||..|+.+-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5777776433333444445789999999997655431 25998874
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.85 E-value=3.2 Score=26.55 Aligned_cols=50 Identities=22% Similarity=0.419 Sum_probs=34.5
Q ss_pred Ccccccccccccccc---ceeEecCCCCccCHhhHHHHhc-CCccccccccccc
Q 046932 102 GIVCGVCQEEMEKEH---EARAIMECMHMFHDSCILKWLK-INNTCPLCRATCK 151 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~---~~~~l~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~ 151 (162)
.-.|.||-+.+.... ..+....|+-..|+.|..-=.+ .+..||.|+....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999999865322 2222236888889999865443 4789999998774
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=74.72 E-value=2.2 Score=27.07 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=33.6
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHh-------cCCcccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWL-------KINNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl-------~~~~~CP~Cr~~~ 150 (162)
.+...|.+|...|..-..-...-.||..||..|....+ ...+.|-.|-..+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 34467999999987543322333799999999976532 1235677776544
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=74.65 E-value=1.8 Score=30.71 Aligned_cols=49 Identities=18% Similarity=0.513 Sum_probs=32.2
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHH--h---cCCccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKW--L---KINNTCPLCRAT 149 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~w--l---~~~~~CP~Cr~~ 149 (162)
++...| +|......+...+..-.|..-||..|+.-- - ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345678 999876544444444578899999998421 1 124579999753
No 104
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.33 E-value=1.2 Score=36.01 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=32.4
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhc-----CCccccccccccccCCCC
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK-----INNTCPLCRATCKPKKLH 156 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~-----~~~~CP~Cr~~~~~~~~~ 156 (162)
+.|+|-...+..|.. .. .|.|.-|-+- ..||. ..-.||+|...+...++.
T Consensus 250 L~CPlS~~ri~~PvR--g~-~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 250 LQCPISYTRMKYPSK--SI-NCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp SBCTTTSSBCSSEEE--ET-TCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred ecCCCccccccccCc--CC-cCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 679998888875533 33 8999844332 22332 134799999888666543
No 105
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=73.91 E-value=1.2 Score=35.72 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=32.8
Q ss_pred CccccccccccccccceeEecCCCCccCHh--hHHHHhcC--CccccccccccccCCCC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDS--CILKWLKI--NNTCPLCRATCKPKKLH 156 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~--Ci~~wl~~--~~~CP~Cr~~~~~~~~~ 156 (162)
.+.|+|-...+..|.. .. .|.|.-|-+ -+...... .-.||+|...+...++.
T Consensus 215 SL~CPlS~~ri~~P~R--g~-~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCR--AV-TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEE--ET-TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCc--CC-CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 3679998888875533 33 899984432 22222221 34799999988666654
No 106
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.65 E-value=2.6 Score=26.87 Aligned_cols=46 Identities=28% Similarity=0.595 Sum_probs=32.3
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhcCC----ccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN----NTCPLCRAT 149 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~~ 149 (162)
.....|.+|... ..+.....|.-.||..|+.+=+... =.||.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 445689999965 2343445788899999997765442 259999754
No 107
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=73.53 E-value=1.8 Score=25.53 Aligned_cols=43 Identities=26% Similarity=0.533 Sum_probs=29.2
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLC 146 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~C 146 (162)
..|-.|+..|.... ...-+.|++.||.+|=.---..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999999985322 12346899999999955432334579988
No 108
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.52 E-value=1.4 Score=29.03 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=25.9
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK 138 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~ 138 (162)
.++..|.||...-... .++.-..|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 3456799998764322 2233358999999999976654
No 109
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.14 E-value=3.2 Score=25.17 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=23.7
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHH
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILK 135 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~ 135 (162)
..|.+|...|..-..-..--.||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999874432222237999999999754
No 110
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=71.69 E-value=0.8 Score=37.08 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhc-------CCcccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK-------INNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~-------~~~~CP~Cr~~~ 150 (162)
.+...|.+|...|..-..-...-.||+.||..|....+. ..+.|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345679999999864322222238999999999876542 135677775544
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.58 E-value=0.67 Score=29.79 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=32.1
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCC----ccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKIN----NTCPLCRAT 149 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~~ 149 (162)
+...|.||...-.. ..++..-.|...||..|+.+=+... =.||.|...
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34579999876432 2343445789999999997544332 259999753
No 112
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.04 E-value=5 Score=27.88 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhc-----------CCcccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK-----------INNTCPLCRA 148 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~-----------~~~~CP~Cr~ 148 (162)
..+..|.+|.+- ..+...-.|...||..|+.+-+. ..=.||.|+.
T Consensus 61 g~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 446789999865 33444457999999999997653 1236999974
No 113
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=70.10 E-value=2.9 Score=24.67 Aligned_cols=51 Identities=24% Similarity=0.446 Sum_probs=33.7
Q ss_pred CCCcccccccccccc-ccceeEecCCCCccCHhhHHHHhc-------CCcccccccccc
Q 046932 100 EDGIVCGVCQEEMEK-EHEARAIMECMHMFHDSCILKWLK-------INNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~-~~~~~~l~~C~H~f~~~Ci~~wl~-------~~~~CP~Cr~~~ 150 (162)
.+...|.||...... ...++.-..|...||..|+.+-+. ..=.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345679999976432 234444468999999999875332 123599997644
No 114
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=69.49 E-value=1.3 Score=28.69 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=29.9
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcC---Ccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI---NNTCPLCRA 148 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~---~~~CP~Cr~ 148 (162)
+...| ||......+ .++..-.|.--||..|+..-+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 887765444 33344578899999998653222 347999974
No 115
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=68.62 E-value=1.7 Score=28.33 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=10.7
Q ss_pred cCHhhHHHHhcC
Q 046932 128 FHDSCILKWLKI 139 (162)
Q Consensus 128 f~~~Ci~~wl~~ 139 (162)
||+.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 116
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=68.50 E-value=1.7 Score=28.26 Aligned_cols=11 Identities=45% Similarity=1.192 Sum_probs=10.4
Q ss_pred cCHhhHHHHhc
Q 046932 128 FHDSCILKWLK 138 (162)
Q Consensus 128 f~~~Ci~~wl~ 138 (162)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 117
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.49 E-value=3.1 Score=30.95 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=32.9
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhc--------CCcccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK--------INNTCPLCRATC 150 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~--------~~~~CP~Cr~~~ 150 (162)
...|.+|...|..-..-...-.||+.||..|...... ..+.|-.|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 4589999999874433333348999999999765431 134677776544
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.84 E-value=3.1 Score=30.74 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=25.2
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHH
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKW 136 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~w 136 (162)
...|.+|...|..-..-...-.||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999998644322233389999999997643
No 119
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=65.40 E-value=1.7 Score=31.49 Aligned_cols=44 Identities=30% Similarity=0.599 Sum_probs=29.5
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcC----Ccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI----NNTCPLCRATC 150 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 150 (162)
..|.+|... + .+.....|...||..|+.+=+.. .-.||.|+..-
T Consensus 3 ~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 469999854 2 23333478899999999764443 22599998643
No 120
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.30 E-value=11 Score=24.65 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=22.6
Q ss_pred cccccccccc-----ccccceeEecCCCCccCHhhHH
Q 046932 103 IVCGVCQEEM-----EKEHEARAIMECMHMFHDSCIL 134 (162)
Q Consensus 103 ~~C~IC~~~~-----~~~~~~~~l~~C~H~f~~~Ci~ 134 (162)
..|.+|+..- ..+..++.-..|+..||..|+.
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4699998753 1233454556899999999994
No 121
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=64.03 E-value=5.2 Score=19.98 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=20.0
Q ss_pred ccccccccccccccceeEecCCCCccCHhh
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSC 132 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~C 132 (162)
..|+.|-..+-..+.+. .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 46999998876665553 4578899888
No 122
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=63.95 E-value=1.2 Score=27.06 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=26.9
Q ss_pred cccccccccccccceeEecCCCCccCHhhHHHHhcC-----Ccccccccc
Q 046932 104 VCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-----NNTCPLCRA 148 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-----~~~CP~Cr~ 148 (162)
.|.||...-. +..++.--.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 3556664322 2334344578899999999854443 125888864
No 123
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.89 E-value=1.1 Score=27.88 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=28.0
Q ss_pred cccccccccccccceeEecCCCCccCHhhHHHHhcC-----Ccccccccc
Q 046932 104 VCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI-----NNTCPLCRA 148 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~-----~~~CP~Cr~ 148 (162)
.|.||...-. +..++.--.|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 5778875422 2334344588999999999854433 125888864
No 124
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=63.66 E-value=6 Score=27.01 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=30.1
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHhc-----------CCcccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK-----------INNTCPLCRA 148 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~-----------~~~~CP~Cr~ 148 (162)
..+..|.||.+- ..+..--.|...||..|+.+-+. ..=.|+.|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999865 33333347899999999986421 1236999964
No 125
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=62.63 E-value=4 Score=26.67 Aligned_cols=48 Identities=29% Similarity=0.585 Sum_probs=32.2
Q ss_pred ccccccccccccccceeEec-CCCCccCHhhHHHH------h----cCCcccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIM-ECMHMFHDSCILKW------L----KINNTCPLCRATC 150 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~-~C~H~f~~~Ci~~w------l----~~~~~CP~Cr~~~ 150 (162)
..|.||...+......+..- .|..-||..|+.-- + ...-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999986554544443 67889999997311 1 0244699998644
No 126
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.48 E-value=0.93 Score=23.68 Aligned_cols=16 Identities=19% Similarity=0.754 Sum_probs=10.7
Q ss_pred CCcccccccccccccc
Q 046932 101 DGIVCGVCQEEMEKEH 116 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~ 116 (162)
+++.|+||+..+....
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3467888887776543
No 127
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.60 E-value=4.5 Score=24.61 Aligned_cols=47 Identities=19% Similarity=0.482 Sum_probs=30.6
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHH---------hcCCcccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKW---------LKINNTCPLCRATC 150 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~w---------l~~~~~CP~Cr~~~ 150 (162)
...| ||...... ...+..-.|..-||..|+.-- ....-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4567 89887653 233334478899999998311 12356799997654
No 128
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=61.60 E-value=3.9 Score=29.61 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=33.4
Q ss_pred ccccccccccccccc---eeEecCCCCccCHhhHHH------Hhc-----CCcccccccccc
Q 046932 103 IVCGVCQEEMEKEHE---ARAIMECMHMFHDSCILK------WLK-----INNTCPLCRATC 150 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~---~~~l~~C~H~f~~~Ci~~------wl~-----~~~~CP~Cr~~~ 150 (162)
..|+||...+..+.. .+..-.|..-||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999877652 444457899999999731 111 145799998754
No 129
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=61.50 E-value=2 Score=32.29 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=25.6
Q ss_pred cccccccccccccceeEecCCCCccCHhhHHHHhcC--C---cccccccc
Q 046932 104 VCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI--N---NTCPLCRA 148 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~--~---~~CP~Cr~ 148 (162)
.|.+|...-. +..+...-.|...||..|+.+=|.. . =.||.|+.
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4777765422 2233344589999999999865543 1 25999965
No 130
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.15 E-value=4.7 Score=28.30 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=28.8
Q ss_pred Cccccccccccc--cccceeEecCCCCccCHhhHHHHhcCC--cccccccc
Q 046932 102 GIVCGVCQEEME--KEHEARAIMECMHMFHDSCILKWLKIN--NTCPLCRA 148 (162)
Q Consensus 102 ~~~C~IC~~~~~--~~~~~~~l~~C~H~f~~~Ci~~wl~~~--~~CP~Cr~ 148 (162)
...|.+|...|. .+... ....|.|.+|..|-. |.... =.|-+|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~-~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRR-QCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCE-ECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCC-cCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 468999999874 22222 334899999999972 33221 14777754
No 131
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.62 E-value=2.1 Score=25.96 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHh----cCCcccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWL----KINNTCPLCRATC 150 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl----~~~~~CP~Cr~~~ 150 (162)
....| ||......+...+..-.|..-||..|+.--- ...-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34568 7988765454444445788889999975321 2245799997643
No 132
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=60.20 E-value=9.5 Score=23.03 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCCcccccccccc-ccccceeEecCCCCccCHhhHHHHhcC--Cccccccccc
Q 046932 100 EDGIVCGVCQEEM-EKEHEARAIMECMHMFHDSCILKWLKI--NNTCPLCRAT 149 (162)
Q Consensus 100 ~~~~~C~IC~~~~-~~~~~~~~l~~C~H~f~~~Ci~~wl~~--~~~CP~Cr~~ 149 (162)
.....|.||...- ..+..++.--.|.-.||..|+..-... .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4456799998763 233344444689999999998743211 2259988653
No 133
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.08 E-value=2.4 Score=26.83 Aligned_cols=50 Identities=22% Similarity=0.500 Sum_probs=34.0
Q ss_pred Ccccccccccccc-ccceeEecCCCCccCHhhHHHHhcC--------Cccccccccccc
Q 046932 102 GIVCGVCQEEMEK-EHEARAIMECMHMFHDSCILKWLKI--------NNTCPLCRATCK 151 (162)
Q Consensus 102 ~~~C~IC~~~~~~-~~~~~~l~~C~H~f~~~Ci~~wl~~--------~~~CP~Cr~~~~ 151 (162)
...|.||...-.. ...++..-.|...||..|+.+-+.. .=.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4579999976432 2344444689999999999765431 236999976553
No 134
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=60.05 E-value=2.9 Score=25.13 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCCccccccccccccccceeEecCCCCccCHhhHHHHh---cCCcccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWL---KINNTCPLCRA 148 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl---~~~~~CP~Cr~ 148 (162)
.+...| ||..... +...+.--.|..-||..|+.--- ...-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 9987764 33344444688899999985321 12446888864
No 135
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.99 E-value=10 Score=24.21 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=27.5
Q ss_pred CCCccccccccccccccceeEecC--CC-CccCHhhHHHHhcC----Ccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIME--CM-HMFHDSCILKWLKI----NNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 150 (162)
.+...| ||..... +. ++..-. |. .-||..|+. |.. .-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345567 9988643 22 222223 44 579999986 222 33699997654
No 136
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.84 E-value=10 Score=22.83 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=27.7
Q ss_pred CCCccccccccccccccceeEecC--CC-CccCHhhHHHHhcC----Ccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIME--CM-HMFHDSCILKWLKI----NNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 150 (162)
.+...| ||..... + .++.--. |. .-||..|+. |.. .-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345668 8987642 3 2222223 55 589999986 322 23699997644
No 137
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=51.72 E-value=3.1 Score=27.42 Aligned_cols=23 Identities=26% Similarity=0.756 Sum_probs=15.6
Q ss_pred CCCCccCHhhHHHHhcCCcccccccccc
Q 046932 123 ECMHMFHDSCILKWLKINNTCPLCRATC 150 (162)
Q Consensus 123 ~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 150 (162)
.||+.|. .-+.....||.|+..-
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 8999981 1123356799998755
No 138
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.19 E-value=10 Score=24.92 Aligned_cols=52 Identities=6% Similarity=0.098 Sum_probs=35.5
Q ss_pred Ccccccccccccc-ccceeEecCCCCccCHhhHHHHhcCCccccccccccccCCC
Q 046932 102 GIVCGVCQEEMEK-EHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKKL 155 (162)
Q Consensus 102 ~~~C~IC~~~~~~-~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 155 (162)
-+.|..|...+.. +.... . .=+..||..|..+-+.....|-.|..+|.+..+
T Consensus 32 CF~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 3578888888752 22221 1 456778999988877655579999998876544
No 139
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.34 E-value=8.8 Score=23.46 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=30.8
Q ss_pred CCCccccccccccccccceeEec--CCCCccCHhhHHHHh---------cCCcccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIM--ECMHMFHDSCILKWL---------KINNTCPLCRATC 150 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~--~C~H~f~~~Ci~~wl---------~~~~~CP~Cr~~~ 150 (162)
.....| ||......+ ..+..- .|..-||..|+.--- ...-.||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345678 898874333 333333 688899999985211 1245799997644
No 140
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.16 E-value=1.5 Score=25.87 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=23.2
Q ss_pred ccccccccccccccceeEe--cC--CCCccCHhhHHHHhc
Q 046932 103 IVCGVCQEEMEKEHEARAI--ME--CMHMFHDSCILKWLK 138 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l--~~--C~H~f~~~Ci~~wl~ 138 (162)
..|+-|...++.......+ .. |++.||..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 3588888887655432222 12 778888888877753
No 141
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.07 E-value=17 Score=23.76 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCCccccccccccccccceeEec--CCCCccCHhhHHHHhcCC----cccccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIM--ECMHMFHDSCILKWLKIN----NTCPLCRATCKP 152 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~--~C~H~f~~~Ci~~wl~~~----~~CP~Cr~~~~~ 152 (162)
..+..|.+|... ..++.-- .|...||..|+. |... =.||.|...+..
T Consensus 13 ~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 345679999842 2333333 477899999986 4331 248877655443
No 142
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=49.99 E-value=0.92 Score=22.64 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=8.8
Q ss_pred ccccccccccccCC
Q 046932 141 NTCPLCRATCKPKK 154 (162)
Q Consensus 141 ~~CP~Cr~~~~~~~ 154 (162)
..||+|+....+.+
T Consensus 4 ~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 4 FCCPKCQYQAPDMD 17 (28)
T ss_dssp EECTTSSCEESSHH
T ss_pred ccCccccccCcChH
Confidence 45888877664433
No 143
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=49.87 E-value=10 Score=22.74 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCCccccccccccccccceeEecCC-CCccCHhhHHHH
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMEC-MHMFHDSCILKW 136 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C-~H~f~~~Ci~~w 136 (162)
++..-|.||.++- .++-+ .| +-.||..|....
T Consensus 6 ee~pWC~ICneDA----tlrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEEET-TTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEEec-CCCCceehHHHHHHH
Confidence 3445699999882 34333 88 789999997764
No 144
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.56 E-value=18 Score=22.14 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKK 154 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (162)
....|..|...+.. ..+ . .-+..||..|. .|-.|...+....
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~-a~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--K-ARDKYRHPECF--------VCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--E-SSSCEECTTTC--------CCSSSCCCTTTSC
T ss_pred cCCCcccCCCEecc-cEE--E-ECCceECccCC--------EecCCCCCCCCCC
Confidence 34679999998874 222 2 46788998773 4788887775443
No 145
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=48.41 E-value=6 Score=22.96 Aligned_cols=44 Identities=25% Similarity=0.549 Sum_probs=26.1
Q ss_pred CCCccccccccccccccceeEecC--CC-CccCHhhHHHHhcC----Ccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIME--CM-HMFHDSCILKWLKI----NNTCPLCRA 148 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~f~~~Ci~~wl~~----~~~CP~Cr~ 148 (162)
.+...| ||..... + ..+.--. |. .-||..|+. +.. .-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344567 8987642 3 2322234 55 589999987 322 236999864
No 146
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=48.27 E-value=3.2 Score=25.70 Aligned_cols=44 Identities=27% Similarity=0.539 Sum_probs=26.2
Q ss_pred cccccccccccccceeEecCCCCccCHhhHHHHhcC----C-cccccccc
Q 046932 104 VCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKI----N-NTCPLCRA 148 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~----~-~~CP~Cr~ 148 (162)
.|.||...-. +..++.--.|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3455554322 2233334578899999999865543 1 25888875
No 147
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=45.81 E-value=16 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCccccccccccccccceeEec--CCCCccCHhhHHHHhcC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIM--ECMHMFHDSCILKWLKI 139 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~--~C~H~f~~~Ci~~wl~~ 139 (162)
.+..|.||-+. ..+...- .|...||..||...+..
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 35678887753 3444332 68899999999998765
No 148
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.73 E-value=21 Score=21.57 Aligned_cols=43 Identities=33% Similarity=0.617 Sum_probs=28.4
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKK 154 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (162)
....|..|-..+.....+. .-+..||..|. .|-.|...+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 3457999999886544442 35677888772 4777777765443
No 149
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.57 E-value=2.3 Score=33.47 Aligned_cols=50 Identities=16% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCccccccccccccccceeEecCCC--CccCHhhHHHHhcCCccccccccc
Q 046932 100 EDGIVCGVCQEEMEKEHEARAIMECM--HMFHDSCILKWLKINNTCPLCRAT 149 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~~~~~~l~~C~--H~f~~~Ci~~wl~~~~~CP~Cr~~ 149 (162)
.....|++|-...........-..=| +.+|..|-..|--.+..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 34567999988764331100000122 456778888898778899999764
No 150
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.92 E-value=35 Score=20.89 Aligned_cols=41 Identities=22% Similarity=0.440 Sum_probs=24.1
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
...|..|-..+.....+. .-+..||..|. .|-.|..++...
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCCC--------eeCCCCCCCCCC
Confidence 346888888776444331 45667777662 356666655433
No 151
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=44.89 E-value=22 Score=23.33 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCcccccccccccc-ccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 101 DGIVCGVCQEEMEK-EHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 101 ~~~~C~IC~~~~~~-~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
+-+.|..|...+.. +..... .=|..||..|..+-+.....|..|..+|.+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~--~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYY--KLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEE--ETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEE--ECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 45678888887753 222211 456778888877765544478888887754
No 152
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=43.57 E-value=3.3 Score=24.34 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=19.1
Q ss_pred CCCccccccccccccc-cceeEecCCCCccCHhhHHHH
Q 046932 100 EDGIVCGVCQEEMEKE-HEARAIMECMHMFHDSCILKW 136 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~-~~~~~l~~C~H~f~~~Ci~~w 136 (162)
.+...|.||+..-..+ ..- ...-|.-.||..|-..|
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh-~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGH-NCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCE-EBTTTCCEECTTSEEEE
T ss_pred CCcchhhhhccceeccCCCc-cccccCCeeecccCCEe
Confidence 3456899999764333 221 11134555565555444
No 153
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.05 E-value=12 Score=24.53 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=22.5
Q ss_pred cccccccccc------cccceeEecCCCCccCHhhHHHH
Q 046932 104 VCGVCQEEME------KEHEARAIMECMHMFHDSCILKW 136 (162)
Q Consensus 104 ~C~IC~~~~~------~~~~~~~l~~C~H~f~~~Ci~~w 136 (162)
.|.+|+..-. .+..++.-..|+..||..|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 5889987542 12344444589999999998643
No 154
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=42.96 E-value=7.9 Score=22.48 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=25.4
Q ss_pred CCccccccccccccccceeEecC--CC-CccCHhhHHHHhcC----Ccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIME--CM-HMFHDSCILKWLKI----NNTCPLCRA 148 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~--C~-H~f~~~Ci~~wl~~----~~~CP~Cr~ 148 (162)
+...| ||..... + .++.--. |. .-||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44567 8987642 2 2322224 44 579999987 332 236998864
No 155
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.94 E-value=29 Score=20.35 Aligned_cols=43 Identities=14% Similarity=0.443 Sum_probs=27.7
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccCC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPKK 154 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (162)
...|+.|...+.....++. .-+..||..|. .|-.|..++....
T Consensus 11 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEGL 53 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE--ETTEEECTTTC--------CCTTTCCCCGGGC
T ss_pred CCCchhcCCccCCCceEEE--eCccEeccccC--------eECCCCCCCCCCC
Confidence 4579999988865444432 34667887762 4777777765443
No 156
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.52 E-value=15 Score=21.75 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=26.9
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
..|+.|-..+.....+. .-+..||..| ..|..|..++...
T Consensus 10 ~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS---SLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEEE---ETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEEE---ECCeEeeCCC--------CCCCCCCCccCCC
Confidence 56999998887554432 3567788776 2477887777543
No 157
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=40.86 E-value=2.6 Score=25.25 Aligned_cols=45 Identities=24% Similarity=0.463 Sum_probs=25.6
Q ss_pred CccccccccccccccceeEec--CCCCccCHhhHHHH---hc-----CCcccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIM--ECMHMFHDSCILKW---LK-----INNTCPLCRA 148 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~--~C~H~f~~~Ci~~w---l~-----~~~~CP~Cr~ 148 (162)
...| ||......+. .+..- .|..-||..|+.-- .. .+-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 7876554443 22221 37778999997310 00 1346999975
No 158
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=40.69 E-value=21 Score=28.83 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCccccccccccccccceeEec--CCCCccCHhhHHHHhcC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIM--ECMHMFHDSCILKWLKI 139 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~--~C~H~f~~~Ci~~wl~~ 139 (162)
.+..|.+|-+. ..+...- .|...||..||...+..
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~ 128 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGP 128 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCT
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcCh
Confidence 34567777653 3343433 78899999999998844
No 159
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=37.78 E-value=2.9 Score=25.90 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=12.6
Q ss_pred CCCCccCHhhHHHH
Q 046932 123 ECMHMFHDSCILKW 136 (162)
Q Consensus 123 ~C~H~f~~~Ci~~w 136 (162)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999998887
No 160
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=37.49 E-value=19 Score=21.65 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=30.9
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhc-----CCcccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLK-----INNTCPLCRATC 150 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~-----~~~~CP~Cr~~~ 150 (162)
...| ||...+..+...+..-.|.--||..|+.---. ..-.||.|+...
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 3445 89877654444444457888999999853211 235699998654
No 161
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.06 E-value=18 Score=23.38 Aligned_cols=39 Identities=23% Similarity=0.549 Sum_probs=22.3
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATC 150 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 150 (162)
..|++|..++.... ++.+|..|-.. +.....||.|..++
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHH
Confidence 67999998875221 22234444332 23355677777665
No 162
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.83 E-value=29 Score=20.86 Aligned_cols=39 Identities=23% Similarity=0.487 Sum_probs=27.2
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
...|..|-..+..+..+. .-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL---ALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE---ETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEE---ECCccccccc--------CCcCcCCCCcC
Confidence 457999999886555443 3467788877 34888887774
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.57 E-value=18 Score=20.77 Aligned_cols=42 Identities=14% Similarity=0.470 Sum_probs=27.9
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
...|+.|...+.....++. .-+..||..|. .|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE--ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE--eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 3579999988875554432 34667887773 477787777544
No 164
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.55 E-value=23 Score=21.14 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=26.3
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
...|..|-..+.. . .+ . .-+..||..|. .|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~-~-~~-~-a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V-FV-K-LRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-S-CE-E-CSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccC-c-EE-E-ECcceeCcCcC--------eeCCCCCCCCC
Confidence 4579999998864 2 22 2 46788888773 47777776643
No 165
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.02 E-value=21 Score=21.93 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=22.7
Q ss_pred CCCccccccccccccc-cceeEecCCCCccCHhhH
Q 046932 100 EDGIVCGVCQEEMEKE-HEARAIMECMHMFHDSCI 133 (162)
Q Consensus 100 ~~~~~C~IC~~~~~~~-~~~~~l~~C~H~f~~~Ci 133 (162)
.....|+.|...|..- .....-..|.|..|..|-
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 3457899999998521 122233478999888884
No 166
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.53 E-value=33 Score=19.77 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=24.0
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
..|+.|...+.....++. .-+..||..|. .|-.|..++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE--YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC--STTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE--ECccccCcccC--------eECCCCCcCCC
Confidence 468888887765333321 35667777662 46677666644
No 167
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.88 E-value=29 Score=19.72 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=24.8
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
..|+.|-..+. +..+ ..-+..||..| ..|-.|..++..
T Consensus 6 ~~C~~C~~~I~-~~~~---~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV---NAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEE---CCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEE---EECccccccCc--------CEECCCCCCCCC
Confidence 46888888876 3222 24567788776 247788777754
No 168
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=32.63 E-value=15 Score=21.48 Aligned_cols=43 Identities=30% Similarity=0.634 Sum_probs=25.8
Q ss_pred CCccccccccccccccceeEecC--CC-CccCHhhHHHHhcC----Ccccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIME--CM-HMFHDSCILKWLKI----NNTCPLCRA 148 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~--C~-H~f~~~Ci~~wl~~----~~~CP~Cr~ 148 (162)
+...| ||..... + ..+.--. |. .-||..|+. |.. .-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 44567 8988632 3 2322234 44 789999986 222 336999964
No 169
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.71 E-value=45 Score=19.18 Aligned_cols=40 Identities=15% Similarity=0.379 Sum_probs=24.8
Q ss_pred cccccccccccc--ccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 103 IVCGVCQEEMEK--EHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 103 ~~C~IC~~~~~~--~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
..|..|-..+.. ...++. .-+..||..|. .|-.|..++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCCC
Confidence 468888888764 223322 35777887762 47777777643
No 170
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.60 E-value=30 Score=19.88 Aligned_cols=37 Identities=19% Similarity=0.498 Sum_probs=21.2
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
..|+.|...+... .+ ..-+..||..|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~-~~---~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG-GV---TYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS-EE---ESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeeccc-eE---EECccccCCCCC--------ccCCCCCcCC
Confidence 3577777776532 21 145667776652 3666666664
No 171
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=31.28 E-value=30 Score=24.46 Aligned_cols=49 Identities=10% Similarity=0.339 Sum_probs=30.2
Q ss_pred Ccccccccccccc-ccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 102 GIVCGVCQEEMEK-EHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 102 ~~~C~IC~~~~~~-~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
-+.|..|...+.. +..... .=|..||..|..+-+.....|..|..+|.+
T Consensus 32 CF~C~~C~~~L~~~g~~~~~--~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYT--KSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEE--ETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CcccCCCCcccccCCceEEE--eCCccccccccccccccCCccccCCCcccc
Confidence 4678888777654 222211 346678888877655433368888877754
No 172
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=30.61 E-value=21 Score=22.35 Aligned_cols=33 Identities=21% Similarity=0.611 Sum_probs=20.7
Q ss_pred Cccccccccc-cccccceeEecCCCCccCHhhHHH
Q 046932 102 GIVCGVCQEE-MEKEHEARAIMECMHMFHDSCILK 135 (162)
Q Consensus 102 ~~~C~IC~~~-~~~~~~~~~l~~C~H~f~~~Ci~~ 135 (162)
.+.|.||... ...-.... ...|.-.||..|...
T Consensus 17 ~l~C~iC~~~~~GAciqC~-~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCH-KANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCCSSCEEECS-CTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCCCcEeEecC-CCCCCCcCcHHHHHH
Confidence 4679999754 22111111 136888999999876
No 173
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.61 E-value=61 Score=19.19 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=25.8
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
...|..|-..+. +..+ ..-+..||..| ..|-.|..++..
T Consensus 15 ~~~C~~C~~~I~-~~~v---~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL---IFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCC---CCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEE---EECcceeCCCC--------CEeCCCCCccCC
Confidence 357999988877 3222 14577788776 347888777753
No 174
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.59 E-value=24 Score=20.76 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=23.7
Q ss_pred CCccccccccccccccceeEecCCCCccCH-hhHHHHhcCCcccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHD-SCILKWLKINNTCPLCRA 148 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~-~Ci~~wl~~~~~CP~Cr~ 148 (162)
+-+.|..|...+....-. . .=+..||. .|..+-+ ...|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~--~-~~g~~yC~~~cy~~~f--~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHA--E-HEGKPYCNHPCYSAMF--GPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEE--E-ETTEEEETTTHHHHHS--SCCCSSCCC
T ss_pred CCCCccccCccCCCCceE--C-cCCeEeeCHHHHHHHh--CccCCCcCC
Confidence 356777777776544211 1 34566777 5765533 344666643
No 175
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.56 E-value=29 Score=20.65 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=26.8
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
..|+.|...+..+..++. .-+..||..|. .|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEE--ECccccccccC--------chhhCCCccCCC
Confidence 468889888875544332 35777887763 477777776443
No 176
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.20 E-value=24 Score=20.43 Aligned_cols=40 Identities=15% Similarity=0.408 Sum_probs=23.2
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
..|+.|-..+.....++. .-+..||..|. .|-.|..++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME--YKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE--ETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEE--ECcCeecccCC--------cccccCCccCC
Confidence 358888877765433322 24566776662 36666666643
No 177
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.17 E-value=27 Score=20.11 Aligned_cols=39 Identities=21% Similarity=0.438 Sum_probs=23.0
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
..|..|-..+.. ..+ . .-+..||..|. .|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~-~~~-~--a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI-K--AMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CCE-E--ETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eEE-E--ECcccccccCC--------EeCCCCCcCCCC
Confidence 468888777652 222 1 34666777662 467777666443
No 178
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.09 E-value=13 Score=22.27 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=22.7
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
..|+.|-..+..+..+. .-+..||..| ..|-.|..++...
T Consensus 8 ~~C~~C~~~I~~~~~~~---a~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ---CDGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEE---ETTEEEESSS--------EECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEE---eCCccccccc--------CccCCCCCCCCCC
Confidence 45777777775444331 3456666655 2366666666433
No 179
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=30.02 E-value=4.6 Score=25.25 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=24.9
Q ss_pred ccccccccccc--cceeEecCCCCccCHhhHHHHhcCC--ccccccc
Q 046932 105 CGVCQEEMEKE--HEARAIMECMHMFHDSCILKWLKIN--NTCPLCR 147 (162)
Q Consensus 105 C~IC~~~~~~~--~~~~~l~~C~H~f~~~Ci~~wl~~~--~~CP~Cr 147 (162)
|+-|-..+... ...+..+.|++.||..|-.+|=..| -+|..=+
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~ 74 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQ 74 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHH
Confidence 77665544321 1222344599999999998883333 2454433
No 180
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.36 E-value=13 Score=24.06 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=3.8
Q ss_pred Cccccccc
Q 046932 102 GIVCGVCQ 109 (162)
Q Consensus 102 ~~~C~IC~ 109 (162)
+..||+|-
T Consensus 47 g~~CPvCg 54 (112)
T 1l8d_A 47 KGKCPVCG 54 (112)
T ss_dssp SEECTTTC
T ss_pred CCCCCCCC
Confidence 33455554
No 181
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=27.25 E-value=42 Score=21.78 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=30.9
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
-+.|..|...+... .. .. .=|..||..|..+- ....|..|..+|.+
T Consensus 30 CF~C~~C~~~L~~~-~f-~~-~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-IY-VM-VNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTS-EE-EE-ETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcC-EE-Ee-ECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 46788888877532 11 11 45677888887663 35679999888864
No 182
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.38 E-value=60 Score=18.90 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=12.6
Q ss_pred cccccccccccccceeEecCCCCccCHhh
Q 046932 104 VCGVCQEEMEKEHEARAIMECMHMFHDSC 132 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~~~l~~C~H~f~~~C 132 (162)
.|+-|-..+.. ..+ ..-+..||..|
T Consensus 7 ~C~~C~~~I~~-~~v---~a~~~~wH~~C 31 (73)
T 1wig_A 7 GCDSCEKYITG-RVL---EAGEKHYHPSC 31 (73)
T ss_dssp SCSSSCCCCSS-CCB---CCSSCCBCTTT
T ss_pred CcccCCCEecC-eeE---EeCCCCCCCCc
Confidence 46666666543 111 13455666655
No 183
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.06 E-value=20 Score=24.88 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=15.2
Q ss_pred cCCCCccCHhhHHHHhcCCcccccccccc
Q 046932 122 MECMHMFHDSCILKWLKINNTCPLCRATC 150 (162)
Q Consensus 122 ~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 150 (162)
..|||.|-.. .....||.|..++
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCCcccCC------CCCCcCCCCCCcc
Confidence 3788877532 2244799998876
No 184
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=25.97 E-value=14 Score=20.53 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=24.4
Q ss_pred ccccccccccceeEecCCCCccCHhhHHHHh---cCCcccccccc
Q 046932 107 VCQEEMEKEHEARAIMECMHMFHDSCILKWL---KINNTCPLCRA 148 (162)
Q Consensus 107 IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl---~~~~~CP~Cr~ 148 (162)
||..... +...+.--.|..-||..|+.--- ...-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766543 33333334688889999975211 12456888864
No 185
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.91 E-value=46 Score=18.97 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=10.5
Q ss_pred CCccccccccccccc
Q 046932 101 DGIVCGVCQEEMEKE 115 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~ 115 (162)
+-..|++|...+...
T Consensus 9 ~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 9 EILACPACHAPLEER 23 (56)
T ss_dssp TSCCCSSSCSCEEEE
T ss_pred hheeCCCCCCcceec
Confidence 346799999886543
No 186
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.78 E-value=38 Score=18.79 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=12.1
Q ss_pred CCccccccccccccccce
Q 046932 101 DGIVCGVCQEEMEKEHEA 118 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~ 118 (162)
....|.+|-..|.....+
T Consensus 17 ~~~~C~~C~k~f~~~~~l 34 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTL 34 (73)
T ss_dssp SEEECSSSCCEEECCCCC
T ss_pred CCeeCCcccchhCCHHHh
Confidence 346799998888654433
No 187
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.66 E-value=48 Score=19.61 Aligned_cols=37 Identities=22% Similarity=0.573 Sum_probs=23.0
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
..|+.|...+. +..+ . .-+..||..|. .|-.|..++.
T Consensus 16 ~~C~~C~~~I~-~~~v-~--a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVV-S--ALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCE-E--ETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-cceE-E--ECCceeCccCC--------ccccCCCCCC
Confidence 36889988876 3222 2 45677887773 3666666554
No 188
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=24.56 E-value=4.6 Score=18.97 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=8.1
Q ss_pred ccCHhhHHHHhc
Q 046932 127 MFHDSCILKWLK 138 (162)
Q Consensus 127 ~f~~~Ci~~wl~ 138 (162)
.||..|..+||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 467777777764
No 189
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.43 E-value=47 Score=20.50 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=30.8
Q ss_pred CCccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 101 DGIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
+-+.|..|...+....-. . .=|..||..|..+- ....|..|..+|.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~--~-~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFV--A-KDNKILCNKCTTRE--DSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCE--E-ETTEEECHHHHTTC--CCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeE--C-cCCEEEChhHhhhh--cCCccccCCCccccC
Confidence 356788888877432221 1 34667888876432 356899999988644
No 190
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.02 E-value=43 Score=19.63 Aligned_cols=39 Identities=15% Similarity=0.368 Sum_probs=23.8
Q ss_pred cccccccccccc--ccceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 103 IVCGVCQEEMEK--EHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 103 ~~C~IC~~~~~~--~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
..|+.|-..+.. ....+. .-+..||..|. .|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC--FQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEE--ECCcccCcccC--------ChhhCCCcCC
Confidence 458888888764 223322 35677887773 3666766664
No 191
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.85 E-value=39 Score=21.02 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=10.3
Q ss_pred cccccccccccCCCCcc
Q 046932 142 TCPLCRATCKPKKLHFQ 158 (162)
Q Consensus 142 ~CP~Cr~~~~~~~~~~~ 158 (162)
-|+.|..-+..+.+.|.
T Consensus 53 FC~~C~~LiSkkrv~f~ 69 (81)
T 2jrp_A 53 FCQNGHGLISKKRVNFV 69 (81)
T ss_dssp CCTTTTCCCCTTSSEEE
T ss_pred eeccCCCEeecceEEEE
Confidence 36777666655555554
No 192
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=23.39 E-value=24 Score=17.72 Aligned_cols=15 Identities=13% Similarity=0.456 Sum_probs=11.6
Q ss_pred cccccccccccccce
Q 046932 104 VCGVCQEEMEKEHEA 118 (162)
Q Consensus 104 ~C~IC~~~~~~~~~~ 118 (162)
+|++|......++..
T Consensus 11 ecalcysitdpgerq 25 (36)
T 2jyp_A 11 ECALCYSITDPGERQ 25 (36)
T ss_dssp CCSSSTTTTTTTCTT
T ss_pred hheeEEeecCcchhh
Confidence 699999887766655
No 193
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=22.74 E-value=33 Score=30.23 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=34.2
Q ss_pred CCcccccccccccccccee------EecCCCCcc--------------------CHhhHHHHhcC--------Ccccccc
Q 046932 101 DGIVCGVCQEEMEKEHEAR------AIMECMHMF--------------------HDSCILKWLKI--------NNTCPLC 146 (162)
Q Consensus 101 ~~~~C~IC~~~~~~~~~~~------~l~~C~H~f--------------------~~~Ci~~wl~~--------~~~CP~C 146 (162)
+-..|.-|+.++..+...+ ..+.||..| |..|-.++-.. -..||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 4468999999987664322 235788776 89998887532 2379999
Q ss_pred cccc
Q 046932 147 RATC 150 (162)
Q Consensus 147 r~~~ 150 (162)
--.+
T Consensus 185 GP~l 188 (772)
T 4g9i_A 185 GPSY 188 (772)
T ss_dssp SCCE
T ss_pred CceE
Confidence 6543
No 194
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=22.19 E-value=33 Score=28.23 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=30.7
Q ss_pred ccccccccccccceeEecCCCCccCHhhHHH---Hhc--CCcccccccccccc
Q 046932 105 CGVCQEEMEKEHEARAIMECMHMFHDSCILK---WLK--INNTCPLCRATCKP 152 (162)
Q Consensus 105 C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~---wl~--~~~~CP~Cr~~~~~ 152 (162)
..||......+...+..-.|.--||..|+.- -.. ..-.||.|+....+
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 4489887654444444457888999999841 111 23479999865433
No 195
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.47 E-value=49 Score=19.58 Aligned_cols=40 Identities=20% Similarity=0.481 Sum_probs=24.7
Q ss_pred ccccccccccccccceeEecCCCCccCHhhHHHHhcCCcccccccccccc
Q 046932 103 IVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKP 152 (162)
Q Consensus 103 ~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (162)
..|+.|...+.....++. .-+..||..|. .|-.|..++..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccCC--------eecCCCCccCC
Confidence 468888888763333321 34677887662 37777776643
No 196
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.01 E-value=60 Score=18.86 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=27.2
Q ss_pred cccccccccccc---ccceeEecCCCCccCHhhHHHHhcCCccccccccccccC
Q 046932 103 IVCGVCQEEMEK---EHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCKPK 153 (162)
Q Consensus 103 ~~C~IC~~~~~~---~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (162)
..|+.|-..+.. ....+. .-+..||..| ..|-.|..++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA--YEGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE--ETTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEE--ECcceeCccc--------CEehhcCCCCCCC
Confidence 469999888874 223322 3567788877 3488888887544
No 197
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.80 E-value=78 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCCccccccccccc-cccceeEecCCCCccCHhhHHH
Q 046932 100 EDGIVCGVCQEEME-KEHEARAIMECMHMFHDSCILK 135 (162)
Q Consensus 100 ~~~~~C~IC~~~~~-~~~~~~~l~~C~H~f~~~Ci~~ 135 (162)
.....|..|...+. ........-.||..+|..|...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 45578999998874 2222222337999999999665
No 198
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.76 E-value=43 Score=22.05 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=27.4
Q ss_pred CccccccccccccccceeEecCCCCccCHhhHHHHhcCCccccccccccc
Q 046932 102 GIVCGVCQEEMEKEHEARAIMECMHMFHDSCILKWLKINNTCPLCRATCK 151 (162)
Q Consensus 102 ~~~C~IC~~~~~~~~~~~~l~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 151 (162)
...|+.|-..+.....+. .-+..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEcccc--------cCcCcCCCccc
Confidence 357999999886432222 4677888877 35888888885
No 199
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.21 E-value=22 Score=21.36 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=9.4
Q ss_pred Cccccccccccc
Q 046932 140 NNTCPLCRATCK 151 (162)
Q Consensus 140 ~~~CP~Cr~~~~ 151 (162)
...||+|.+++.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 456999998874
No 200
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.50 E-value=22 Score=15.25 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=3.7
Q ss_pred cccccccc
Q 046932 143 CPLCRATC 150 (162)
Q Consensus 143 CP~Cr~~~ 150 (162)
|+.|...+
T Consensus 5 C~~C~k~f 12 (26)
T 2lvu_A 5 CERCGKRF 12 (26)
Confidence 44454443
Done!