BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046940
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 36 DEQYNLPLGYRFSPRGNELITHYLIKKISGQQLPANIIREIDLYAFDPHQLPISEFKYGK 95
+ + NLP G+RF P +EL+ HYL +K +GQ+LP II E+DLY FDP LP +
Sbjct: 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR 69
Query: 96 PDEAYFFT----------RPGKRRRTSSGYWKPTGRDLPILSGKAIVGFKRILIFYKGKA 145
E YFFT RP R +GYWK TG D P+ +G K+ L+FY GKA
Sbjct: 70 --EWYFFTPRDRKYPNGSRPN--RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKA 125
Query: 146 PRGIKTPWVVHEFRV 160
PRG+KT W++HE+R+
Sbjct: 126 PRGVKTDWIMHEYRL 140
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 95/172 (55%), Gaps = 24/172 (13%)
Query: 38 QYNLPLGYRFSPRGNELITHYLIKKISGQQLPANIIREIDLYAFDPHQLPISEFKYGKPD 97
Q +LP G+RF P EL+ YL +K +G +I EIDLY FDP LP ++ +G+
Sbjct: 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP-NKALFGE-K 71
Query: 98 EAYFFT----------RPGKRRRTSSGYWKPTGRDLPILSGKAIVGFKRILIFYKGKAPR 147
E YFF+ RP R SGYWK TG D I + VG K+ L+FY GKAP+
Sbjct: 72 EWYFFSPRDRKYPNGSRP--NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 129
Query: 148 GIKTPWVVHEFRVNPLYFSAIRRNKLDEDVNAKVESYIACKIRYKRQRQSDK 199
G KT W++HE+R+ RRN + K++ ++ C+I YK+Q + K
Sbjct: 130 GTKTNWIMHEYRL----IEPSRRNG-----STKLDDWVLCRI-YKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 95/172 (55%), Gaps = 24/172 (13%)
Query: 38 QYNLPLGYRFSPRGNELITHYLIKKISGQQLPANIIREIDLYAFDPHQLPISEFKYGKPD 97
Q +LP G+RF P EL+ YL +K +G +I EIDLY FDP LP ++ +G+
Sbjct: 17 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP-NKALFGE-K 74
Query: 98 EAYFFT----------RPGKRRRTSSGYWKPTGRDLPILSGKAIVGFKRILIFYKGKAPR 147
E YFF+ RP R SGYWK TG D I + VG K+ L+FY GKAP+
Sbjct: 75 EWYFFSPRDRKYPNGSRPN--RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 132
Query: 148 GIKTPWVVHEFRVNPLYFSAIRRNKLDEDVNAKVESYIACKIRYKRQRQSDK 199
G KT W++HE+R+ RRN + K++ ++ C+I YK+Q + K
Sbjct: 133 GTKTNWIMHEYRL----IEPSRRNG-----STKLDDWVLCRI-YKKQSSAQK 174
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 27/136 (19%)
Query: 5 DIVSYSQQTSATRNNNLS---------AYSISAGRGSNQD----DEQYNLPLGYRFSPRG 51
D+ ++ QTS + Y RG+ D Q+ G R+ RG
Sbjct: 57 DVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRG 116
Query: 52 NELITHYLIKKISGQQLPANIIREIDLYAFDPHQLPISEFKYGKPDEAYFFTRPGKRRRT 111
++H +G+ + +++R DL A D P FK A +F + +
Sbjct: 117 PIQLSHNYNYGPAGRAIGVDLLRNPDLVATD----PTVSFK-----TALWFWMTAQAPKP 167
Query: 112 SS-----GYWKPTGRD 122
SS G W P+G D
Sbjct: 168 SSHAVITGKWSPSGAD 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,727,254
Number of Sequences: 62578
Number of extensions: 298979
Number of successful extensions: 504
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)