Query 046940
Match_columns 222
No_of_seqs 129 out of 923
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.8E-53 6E-58 353.1 13.5 153 36-194 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 7.8E-53 2.7E-57 348.6 11.9 148 36-194 12-167 (171)
3 1ldd_A APC2WHB, anaphase promo 38.0 16 0.00055 25.4 2.0 28 41-69 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 22.9 91 0.0031 22.5 3.8 37 48-88 50-86 (104)
5 3nr5_A MAF1, repressor of RNA 14.5 29 0.00099 27.7 -0.6 13 72-84 118-130 (164)
6 1f6k_A N-acetylneuraminate lya 14.1 61 0.0021 27.5 1.3 20 39-59 104-123 (293)
7 2ehh_A DHDPS, dihydrodipicolin 14.0 61 0.0021 27.5 1.3 20 39-59 100-119 (294)
8 3dz1_A Dihydrodipicolinate syn 13.9 64 0.0022 27.7 1.5 19 39-59 107-125 (313)
9 2ojp_A DHDPS, dihydrodipicolin 13.8 62 0.0021 27.4 1.3 21 38-59 100-120 (292)
10 3cpr_A Dihydrodipicolinate syn 13.7 63 0.0022 27.6 1.3 21 38-59 115-135 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.8e-53 Score=353.08 Aligned_cols=153 Identities=41% Similarity=0.860 Sum_probs=131.1
Q ss_pred cCccCCCCceeECCChHHHHHHHHHHhhcCCCCCCCeeEeccCCCCCCCCCCccccccCCCCeEEEeecCCcc-------
Q 046940 36 DEQYNLPLGYRFSPRGNELITHYLIKKISGQQLPANIIREIDLYAFDPHQLPISEFKYGKPDEAYFFTRPGKR------- 108 (222)
Q Consensus 36 ~~~~~LPpGfRF~PTDeELV~~YL~~Ki~g~pl~~~~I~~~Dvy~~~PweLp~~~~~~g~~~~wYFFt~~~~k------- 108 (222)
+.++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+ .+..+ +.+||||+++.+|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~-~~~~g-~~ewYFFs~r~~ky~~g~R~ 87 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE-RALFG-AREWYFFTPRDRKYPNGSRP 87 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGG-GCSSC-SSEEEEEEECCC-----CCS
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhh-hhccC-CceEEEEeccccccCCCCCc
Confidence 45789999999999999999999999999999999999999999999999999 66666 7899999999764
Q ss_pred -ccCCCceeecCCCCeeeecCCeeEEEEEEeeeecCCCCCCCCcCeEEEEEEeCCCCchhhhcccccccccccCCcEEEE
Q 046940 109 -RRTSSGYWKPTGRDLPILSGKAIVGFKRILIFYKGKAPRGIKTPWVVHEFRVNPLYFSAIRRNKLDEDVNAKVESYIAC 187 (222)
Q Consensus 109 -R~~~~G~Wk~~g~~k~I~~~g~~vG~kr~l~F~~~~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~~~~VLC 187 (222)
|++++|+||++|+++.|..+|.+||+|++|+||.++.+++.+|+|+||||+|.+....+... .......++||||
T Consensus 88 nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~----~~~~~~~~~wVlC 163 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGA----KKGSLRLDDWVLC 163 (174)
T ss_dssp CEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC---------------CCSSEEEE
T ss_pred eeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccccc----ccCCCCCCCEEEE
Confidence 78999999999999999988899999999999999999999999999999999875432100 1112346899999
Q ss_pred EEEeecC
Q 046940 188 KIRYKRQ 194 (222)
Q Consensus 188 rI~~k~~ 194 (222)
|||+|+.
T Consensus 164 rvf~K~~ 170 (174)
T 3ulx_A 164 RLYNKKN 170 (174)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 9998753
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=7.8e-53 Score=348.58 Aligned_cols=148 Identities=41% Similarity=0.774 Sum_probs=129.7
Q ss_pred cCccCCCCceeECCChHHHHHHHHHHhhcCCCCCCCeeEeccCCCCCCCCCCccccccCCCCeEEEeecCCcc-------
Q 046940 36 DEQYNLPLGYRFSPRGNELITHYLIKKISGQQLPANIIREIDLYAFDPHQLPISEFKYGKPDEAYFFTRPGKR------- 108 (222)
Q Consensus 36 ~~~~~LPpGfRF~PTDeELV~~YL~~Ki~g~pl~~~~I~~~Dvy~~~PweLp~~~~~~g~~~~wYFFt~~~~k------- 108 (222)
..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+ .+..+ +.+||||+++.+|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~-~~~~g-~~ewyFFs~r~~k~~~g~R~ 89 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPN-KALFG-EKEWYFFSPRDRKYPNGSRP 89 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHH-HSSSC-SSEEEEEEECCC-------C
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhc-hhhcC-CccEEEEeccccccCCCCcc
Confidence 45789999999999999999999999999999999999999999999999999 66666 8999999999865
Q ss_pred -ccCCCceeecCCCCeeeecCCeeEEEEEEeeeecCCCCCCCCcCeEEEEEEeCCCCchhhhcccccccccccCCcEEEE
Q 046940 109 -RRTSSGYWKPTGRDLPILSGKAIVGFKRILIFYKGKAPRGIKTPWVVHEFRVNPLYFSAIRRNKLDEDVNAKVESYIAC 187 (222)
Q Consensus 109 -R~~~~G~Wk~~g~~k~I~~~g~~vG~kr~l~F~~~~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~~~~VLC 187 (222)
|++++|+||++|+++.|..++.+||+|++|+||.++.+++.+|+|+||||+|...... ......++||||
T Consensus 90 ~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~---------~~~~~~~~~VlC 160 (171)
T 1ut7_A 90 NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR---------NGSTKLDDWVLC 160 (171)
T ss_dssp CEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------------CCEEEE
T ss_pred cccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc---------cCcccCCCEEEE
Confidence 7899999999999999999889999999999999999999999999999999987521 011345889999
Q ss_pred EEEeecC
Q 046940 188 KIRYKRQ 194 (222)
Q Consensus 188 rI~~k~~ 194 (222)
|||+|+.
T Consensus 161 rv~~k~~ 167 (171)
T 1ut7_A 161 RIYKKQS 167 (171)
T ss_dssp EEEECC-
T ss_pred EEEEcCC
Confidence 9998764
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=38.02 E-value=16 Score=25.38 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=23.3
Q ss_pred CCCceeECC-ChHHHHHHHHHHhhcCCCCC
Q 046940 41 LPLGYRFSP-RGNELITHYLIKKISGQQLP 69 (222)
Q Consensus 41 LPpGfRF~P-TDeELV~~YL~~Ki~g~pl~ 69 (222)
.|.|+.|.. |++||-. ||..++....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 477999998 9999988 899999987653
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=22.89 E-value=91 Score=22.49 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=30.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCCeeEeccCCCCCCCCCCc
Q 046940 48 SPRGNELITHYLIKKISGQQLPANIIREIDLYAFDPHQLPI 88 (222)
Q Consensus 48 ~PTDeELV~~YL~~Ki~g~pl~~~~I~~~Dvy~~~PweLp~ 88 (222)
+-|-.||+..-...-..|+|||.+ .|+-...|.++|.
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~ 86 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPE 86 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchH
Confidence 457778877766788999999964 6888889999987
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=14.51 E-value=29 Score=27.72 Aligned_cols=13 Identities=31% Similarity=0.905 Sum_probs=10.8
Q ss_pred eeEeccCCCCCCC
Q 046940 72 IIREIDLYAFDPH 84 (222)
Q Consensus 72 ~I~~~Dvy~~~Pw 84 (222)
-+.++|||++.|.
T Consensus 118 ~l~dC~IYsY~Pd 130 (164)
T 3nr5_A 118 CLAECDIYSYNPD 130 (164)
T ss_dssp CGGGCEEEEECCC
T ss_pred CccCCeEEEEcCC
Confidence 3677899999998
No 6
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=14.07 E-value=61 Score=27.49 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=15.2
Q ss_pred cCCCCceeECCChHHHHHHHH
Q 046940 39 YNLPLGYRFSPRGNELITHYL 59 (222)
Q Consensus 39 ~~LPpGfRF~PTDeELV~~YL 59 (222)
+-+||-| |.||+++|+.||-
T Consensus 104 lv~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 104 SAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EEECCCS-SCCCHHHHHHHHH
T ss_pred EECCCCC-CCCCHHHHHHHHH
Confidence 3456654 8899999999874
No 7
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=14.03 E-value=61 Score=27.50 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.1
Q ss_pred cCCCCceeECCChHHHHHHHH
Q 046940 39 YNLPLGYRFSPRGNELITHYL 59 (222)
Q Consensus 39 ~~LPpGfRF~PTDeELV~~YL 59 (222)
+-+||-| |.||+++|+.||-
T Consensus 100 lv~~P~y-~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 100 LVVVPYY-NKPTQRGLYEHFK 119 (294)
T ss_dssp EEECCCS-SCCCHHHHHHHHH
T ss_pred EECCCCC-CCCCHHHHHHHHH
Confidence 3456644 7899999999874
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=13.92 E-value=64 Score=27.69 Aligned_cols=19 Identities=11% Similarity=0.030 Sum_probs=14.2
Q ss_pred cCCCCceeECCChHHHHHHHH
Q 046940 39 YNLPLGYRFSPRGNELITHYL 59 (222)
Q Consensus 39 ~~LPpGfRF~PTDeELV~~YL 59 (222)
+-+||- |.||+++|+.||-
T Consensus 107 lv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 107 MIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EECCCT--TCCSHHHHHHHHH
T ss_pred EECCCC--CCCCHHHHHHHHH
Confidence 346774 5699999999764
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=13.83 E-value=62 Score=27.41 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=15.6
Q ss_pred ccCCCCceeECCChHHHHHHHH
Q 046940 38 QYNLPLGYRFSPRGNELITHYL 59 (222)
Q Consensus 38 ~~~LPpGfRF~PTDeELV~~YL 59 (222)
-+-+||-| |.||+++|+.||-
T Consensus 100 vlv~~P~y-~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 100 CLTVTPYY-NRPSQEGLYQHFK 120 (292)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 34456654 7899999999873
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=13.68 E-value=63 Score=27.62 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=15.6
Q ss_pred ccCCCCceeECCChHHHHHHHH
Q 046940 38 QYNLPLGYRFSPRGNELITHYL 59 (222)
Q Consensus 38 ~~~LPpGfRF~PTDeELV~~YL 59 (222)
-+-+|| |-|.|++++|+.||-
T Consensus 115 vlv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 115 LLVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEEECC-CSSCCCHHHHHHHHH
T ss_pred EEECCC-CCCCCCHHHHHHHHH
Confidence 344566 448899999999874
Done!