BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046942
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 12/41 (29%)
Query: 34 NNMKPDYNLAARLEGSGGLTECWN--------ALMALKSCS 66
N +KPD R+E GGL E WN A +AL C+
Sbjct: 18 NALKPD----NRIESEGGLIETWNPNNKPFQCAGVALSRCT 54
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 12/41 (29%)
Query: 34 NNMKPDYNLAARLEGSGGLTECWN--------ALMALKSCS 66
N +KPD R+E GGL E WN A +AL C+
Sbjct: 18 NALKPD----NRIESEGGLIETWNPNNKPFQCAGVALSRCT 54
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b
Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b
Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b
Homotrimer
Length = 476
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 12/41 (29%)
Query: 34 NNMKPDYNLAARLEGSGGLTECWN--------ALMALKSCS 66
N +KPD R+E GGL E WN A +AL C+
Sbjct: 18 NALKPD----NRIESEGGLIETWNPNNKPFQCAGVALSRCT 54
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 34 NNMKPDYNLAARLEGSGGLTECWNALMALKSCSNEIV 70
N ++PD+ R+E GGL E WN+ C+ V
Sbjct: 14 NALEPDH----RVESEGGLIETWNSQHPELQCAGVTV 46
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 34 NNMKPDYNLAARLEGSGGLTECWNALMALKSCSNEIV 70
N ++PD+ R+E GGL E WN+ C+ V
Sbjct: 15 NALEPDH----RVESEGGLIETWNSQHPELQCAGVTV 47
>pdb|3ONM|A Chain A, Effector Binding Domain Of Lysr-Type Transcription Factor
Rovm From Y. Pseudotuberculosis
pdb|3ONM|B Chain B, Effector Binding Domain Of Lysr-Type Transcription Factor
Rovm From Y. Pseudotuberculosis
Length = 238
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 36 MKPDYNLAARLEGSGGLTECWNALMALKSCSNEIVIFFLNG 76
M PD + EG GL E L K C NE+ + +
Sbjct: 171 MSPDLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSA 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,841,093
Number of Sequences: 62578
Number of extensions: 135497
Number of successful extensions: 236
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 8
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)