Query 046942
Match_columns 134
No_of_seqs 98 out of 100
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 3.5E-41 7.5E-46 250.8 9.6 113 3-127 1-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 4.1E-20 8.8E-25 123.5 3.2 65 54-118 1-70 (70)
3 PF07172 GRP: Glycine rich pro 95.9 0.0039 8.4E-08 45.1 1.6 28 3-31 1-28 (95)
4 PLN00214 putative protein; Pro 90.0 0.41 8.8E-06 36.2 3.5 41 53-97 37-78 (115)
5 smart00499 AAI Plant lipid tra 40.5 15 0.00032 23.0 1.0 22 79-100 23-45 (79)
6 PF15284 PAGK: Phage-encoded v 36.7 38 0.00083 23.1 2.5 19 5-23 4-22 (61)
7 cd03727 SOCS_ASB8 SOCS (suppre 36.0 24 0.00051 22.4 1.3 32 81-116 7-39 (43)
8 cd04660 nsLTP_like nsLTP_like: 34.8 32 0.0007 22.8 1.9 20 80-99 24-43 (73)
9 cd00010 AAI_LTSS AAI_LTSS: Alp 33.9 35 0.00076 21.4 1.9 28 73-100 7-38 (63)
10 cd01960 nsLTP1 nsLTP1: Non-spe 33.1 36 0.00078 23.1 2.0 33 55-92 3-36 (89)
11 PF09585 Lin0512_fam: Conserve 27.6 27 0.00058 26.3 0.6 28 80-107 18-46 (113)
12 PF10731 Anophelin: Thrombin i 23.7 72 0.0016 21.9 2.1 16 3-18 1-17 (65)
13 PF14368 LTP_2: Probable lipid 21.2 39 0.00085 22.5 0.5 32 73-104 35-69 (96)
No 1
>PLN00213 predicted protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=250.85 Aligned_cols=113 Identities=25% Similarity=0.507 Sum_probs=102.7
Q ss_pred chhHHHHHHHHHHHHHHhhcccccccC--cCCCCCCCCCcchhhhccCCCCchhHhhhhhcccchHHHHHHHHHhCccc-
Q 046942 3 MALKHVFFILALTCLIMENIANATNRN--DHLNNNMKPDYNLAARLEGSGGLTECWNALMALKSCSNEIVIFFLNGQAD- 79 (134)
Q Consensus 3 ma~k~~~~ll~v~~~i~~~~~~~~~a~--~~p~~~p~p~~~l~~~l~~~~~~~~Cwssl~~v~gC~~EI~~~fl~G~~~- 79 (134)
|++|||++||+|+||++ +|||| |+|.++|+|+ +++++||.+|+.||||||++++||+.||.+++++||++
T Consensus 1 m~iknV~~ll~v~cIvv-----sVna~lpqf~~~fp~~~--p~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~ 73 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIV-----SVNAQLPQFPAQLPFLF--PFQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGN 73 (118)
T ss_pred CchHHHHHHHHHHHHHh-----eeccCCCCCCCCCCCCC--CccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcc
Confidence 89999999999999999 99999 8877777666 67899999999999999999999999999999999997
Q ss_pred cChhhhHHHHhhhcCcccccccCCCCCcchhhhhhhccccCCCC-CCCC
Q 046942 80 IGLDCCRAIDTITHNCWPAMLTSLGFTTEEGNILRGYCDASSAP-SPGG 127 (134)
Q Consensus 80 Igp~CC~Ai~~i~~~CWP~mfps~pF~~~e~~~LKg~Cs~~~~~-~P~~ 127 (134)
||++|||||++.+ +|||+| |.+||++ ++||++|++++.. +|+|
T Consensus 74 Ig~aCCKAf~~~d-nCwP~~-P~~P~fP---p~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 74 LGPACCKAFLDAD-NCIPKI-PFIPFFP---PMLKEQCSRVAGATPPIP 117 (118)
T ss_pred cchHHHHHHHhhh-ccccCC-cCCCccc---hHHHHHHhcccCCCCCCC
Confidence 9999999999965 999995 9999999 8999999997644 4544
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.79 E-value=4.1e-20 Score=123.45 Aligned_cols=65 Identities=31% Similarity=0.692 Sum_probs=56.5
Q ss_pred hHhhhhhcccchHHHHHHHHHhCccc-cChhhhHHHHhhhcCcccccccCCCCCcchhh----hhhhccc
Q 046942 54 ECWNALMALKSCSNEIVIFFLNGQAD-IGLDCCRAIDTITHNCWPAMLTSLGFTTEEGN----ILRGYCD 118 (134)
Q Consensus 54 ~Cwssl~~v~gC~~EI~~~fl~G~~~-Igp~CC~Ai~~i~~~CWP~mfps~pF~~~e~~----~LKg~Cs 118 (134)
|||++++++++|++||+.+|++|+.. ||++||++|++++++||+.|+...+++|++.+ .||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 69999999999999999999999954 99999999999999999995554455555557 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.94 E-value=0.0039 Score=45.08 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHHHhhcccccccCcC
Q 046942 3 MALKHVFFILALTCLIMENIANATNRNDH 31 (134)
Q Consensus 3 ma~k~~~~ll~v~~~i~~~~~~~~~a~~~ 31 (134)
|++|. |+||+|++.++.++|+.|+||++
T Consensus 1 MaSK~-~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHHhhhhhHHh
Confidence 78888 44444444444455678888877
No 4
>PLN00214 putative protein; Provisional
Probab=90.04 E-value=0.41 Score=36.21 Aligned_cols=41 Identities=20% Similarity=0.511 Sum_probs=32.4
Q ss_pred hhHhhhhhcccchHHHHHHHHH-hCccccChhhhHHHHhhhcCccc
Q 046942 53 TECWNALMALKSCSNEIVIFFL-NGQADIGLDCCRAIDTITHNCWP 97 (134)
Q Consensus 53 ~~Cwssl~~v~gC~~EI~~~fl-~G~~~Igp~CC~Ai~~i~~~CWP 97 (134)
..|-.-+. +-|..||+..++ ||. ...+||+-+...+.+|--
T Consensus 37 ~~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~ 78 (115)
T PLN00214 37 NTCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHD 78 (115)
T ss_pred HHHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHH
Confidence 34544333 669999999999 665 589999999999999944
No 5
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=40.49 E-value=15 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=17.3
Q ss_pred ccChhhhHHHHhh-hcCcccccc
Q 046942 79 DIGLDCCRAIDTI-THNCWPAML 100 (134)
Q Consensus 79 ~Igp~CC~Ai~~i-~~~CWP~mf 100 (134)
.-...||..++.+ ...|+=..+
T Consensus 23 ~p~~~CC~~l~~~~~~~C~C~~~ 45 (79)
T smart00499 23 PPSQQCCSQLRGLNSAQCRCLAL 45 (79)
T ss_pred CCchHHHHHHHHhcccCCcchhh
Confidence 3778999999999 888865433
No 6
>PF15284 PAGK: Phage-encoded virulence factor
Probab=36.66 E-value=38 Score=23.06 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 046942 5 LKHVFFILALTCLIMENIA 23 (134)
Q Consensus 5 ~k~~~~ll~v~~~i~~~~~ 23 (134)
+|+||+.|++++....-.|
T Consensus 4 ~ksifL~l~~~LsA~~FSa 22 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSA 22 (61)
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 6888888877777665433
No 7
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=36.04 E-value=24 Score=22.35 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=22.9
Q ss_pred ChhhhHHHHh-hhcCcccccccCCCCCcchhhhhhhc
Q 046942 81 GLDCCRAIDT-ITHNCWPAMLTSLGFTTEEGNILRGY 116 (134)
Q Consensus 81 gp~CC~Ai~~-i~~~CWP~mfps~pF~~~e~~~LKg~ 116 (134)
-.-|..||+. ++.+|.+...+..|... .||+|
T Consensus 7 q~LcR~aiR~~lg~~~l~~aI~~LpLP~----sLK~Y 39 (43)
T cd03727 7 KALARYAVRRSLGVQYLPEAVKQLPLPR----SVKEY 39 (43)
T ss_pred HHHHHHHHHHHHhhhhHHhhcccCCCCH----HHHHH
Confidence 3468888884 45676666668888865 88887
No 8
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=34.76 E-value=32 Score=22.82 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=15.6
Q ss_pred cChhhhHHHHhhhcCccccc
Q 046942 80 IGLDCCRAIDTITHNCWPAM 99 (134)
Q Consensus 80 Igp~CC~Ai~~i~~~CWP~m 99 (134)
-+.+||.+|+.++..|.=..
T Consensus 24 Ps~~CC~~vk~~~~~C~C~~ 43 (73)
T cd04660 24 PSRECCAALRRADLPCLCRY 43 (73)
T ss_pred CCHHHHHHHHcCCcCCEeec
Confidence 67889999998877776433
No 9
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=33.93 E-value=35 Score=21.41 Aligned_cols=28 Identities=32% Similarity=0.738 Sum_probs=18.8
Q ss_pred HHhCccc-cChhhhHHHHhhhc---Ccccccc
Q 046942 73 FLNGQAD-IGLDCCRAIDTITH---NCWPAML 100 (134)
Q Consensus 73 fl~G~~~-Igp~CC~Ai~~i~~---~CWP~mf 100 (134)
|++|... -.+.||.+++.+.+ .|.=..+
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~ 38 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVKSDPKCLCAAL 38 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHhcChhhHHHHH
Confidence 3455534 88999999999853 5544433
No 10
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=33.10 E-value=36 Score=23.15 Aligned_cols=33 Identities=21% Similarity=0.608 Sum_probs=22.8
Q ss_pred HhhhhhcccchHHHHHHHHHhCccc-cChhhhHHHHhhh
Q 046942 55 CWNALMALKSCSNEIVIFFLNGQAD-IGLDCCRAIDTIT 92 (134)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-Igp~CC~Ai~~i~ 92 (134)
|=..+..+..|.. |++|... -++.||.+++.+.
T Consensus 3 C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~ 36 (89)
T cd01960 3 CGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLN 36 (89)
T ss_pred HHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHh
Confidence 5556666666754 3445444 8899999999865
No 11
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=27.62 E-value=27 Score=26.29 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=23.6
Q ss_pred cChhhhHHHH-hhhcCcccccccCCCCCc
Q 046942 80 IGLDCCRAID-TITHNCWPAMLTSLGFTT 107 (134)
Q Consensus 80 Igp~CC~Ai~-~i~~~CWP~mfps~pF~~ 107 (134)
.-+++++|++ .|.++|.|.|+-..|+..
T Consensus 18 ~TkAA~RAv~DAI~~nslp~l~~~~~~~~ 46 (113)
T PF09585_consen 18 YTKAAVRAVRDAISHNSLPGLFEILGLDL 46 (113)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHcCCCh
Confidence 5678899997 788999999999888844
No 12
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=23.66 E-value=72 Score=21.90 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=8.6
Q ss_pred chhHHHH-HHHHHHHHH
Q 046942 3 MALKHVF-FILALTCLI 18 (134)
Q Consensus 3 ma~k~~~-~ll~v~~~i 18 (134)
||.|.++ .||-+.++.
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 7888765 344333333
No 13
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=21.22 E-value=39 Score=22.54 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=19.4
Q ss_pred HHhCccccChhhhHHHHhh---hcCcccccccCCC
Q 046942 73 FLNGQADIGLDCCRAIDTI---THNCWPAMLTSLG 104 (134)
Q Consensus 73 fl~G~~~Igp~CC~Ai~~i---~~~CWP~mfps~p 104 (134)
+.++...-.+.||.+++.+ +.+|.=.++....
T Consensus 35 ~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~ 69 (96)
T PF14368_consen 35 YVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPG 69 (96)
T ss_dssp HHCC-----HHHHHHHCC----HCCHHHCCCC-CC
T ss_pred ccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccc
Confidence 4556666999999999996 8888766666544
Done!