Query 046942
Match_columns 134
No_of_seqs 98 out of 100
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8l_A FTSZ-like protein of un 14.3 46 0.0016 24.3 0.5 27 80-106 22-49 (122)
2 2ebo_A Ebola virus envelope gl 14.0 35 0.0012 22.7 -0.2 12 77-88 44-56 (74)
3 1afh_A Maize nonspecific lipid 12.1 1.3E+02 0.0043 20.0 2.2 61 55-120 4-78 (93)
4 1n89_A Lipid transfer protein; 11.6 1.3E+02 0.0046 18.7 2.1 18 79-97 19-36 (67)
5 1ebo_A Ebola virus envelope pr 11.1 49 0.0017 24.2 -0.2 9 78-86 82-91 (131)
6 2ljo_A Non-specific lipid-tran 10.5 1.5E+02 0.005 19.9 2.1 33 55-92 4-36 (93)
7 1l6h_A LTP2, non-specific lipi 10.3 1.2E+02 0.004 19.1 1.5 17 79-96 20-36 (69)
8 2knp_A Mcocc-1; disulfide-rich 9.8 50 0.0017 18.8 -0.4 11 93-103 17-27 (33)
9 1siy_A LTP 1, NS-LTP1, nonspec 8.9 1.9E+02 0.0066 19.0 2.2 60 55-119 3-75 (91)
10 2alg_A Non-specific lipid tran 8.9 1.5E+02 0.005 19.6 1.6 60 55-119 4-76 (92)
No 1
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=14.32 E-value=46 Score=24.29 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.0
Q ss_pred cChhhhHHHH-hhhcCcccccccCCCCC
Q 046942 80 IGLDCCRAID-TITHNCWPAMLTSLGFT 106 (134)
Q Consensus 80 Igp~CC~Ai~-~i~~~CWP~mfps~pF~ 106 (134)
.-+++.+|++ .|.++|.|.++...|+.
T Consensus 22 ~TkAA~RAvrDAI~~nslp~~~~~~g~~ 49 (122)
T 3c8l_A 22 PTIAASRAVRNAIAHNALPGVWEVAGLS 49 (122)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHTCS
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHCCCC
Confidence 4567888887 78899999999888874
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=13.99 E-value=35 Score=22.75 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=8.4
Q ss_pred ccc-cChhhhHHH
Q 046942 77 QAD-IGLDCCRAI 88 (134)
Q Consensus 77 ~~~-Igp~CC~Ai 88 (134)
.-. +||+||--+
T Consensus 44 tc~ilgpdc~i~~ 56 (74)
T 2ebo_A 44 TCHILGPDCAIEP 56 (74)
T ss_dssp HHHHHGGGGGCCC
T ss_pred cceecCCccccCH
Confidence 334 999999543
No 3
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=12.05 E-value=1.3e+02 Score=19.98 Aligned_cols=61 Identities=20% Similarity=0.503 Sum_probs=35.3
Q ss_pred HhhhhhcccchHHHHHHHHHhCccc-cChhhhHHHHhhh----------c--CcccccccCC-CCCcchhhhhhhccccC
Q 046942 55 CWNALMALKSCSNEIVIFFLNGQAD-IGLDCCRAIDTIT----------H--NCWPAMLTSL-GFTTEEGNILRGYCDAS 120 (134)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-Igp~CC~Ai~~i~----------~--~CWP~mfps~-pF~~~e~~~LKg~Cs~~ 120 (134)
|=+.+..+..|..- +.|... -.++||.+++.+. . .|.-...... +..+.-+.-|-+.|.-.
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~ 78 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCC
Confidence 55556666667554 344434 6778999999985 2 4443222222 45554455666777553
No 4
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=11.62 E-value=1.3e+02 Score=18.70 Aligned_cols=18 Identities=17% Similarity=0.613 Sum_probs=14.2
Q ss_pred ccChhhhHHHHhhhcCccc
Q 046942 79 DIGLDCCRAIDTITHNCWP 97 (134)
Q Consensus 79 ~Igp~CC~Ai~~i~~~CWP 97 (134)
...++||.+++.. ..|.=
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 4889999999975 67744
No 5
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=11.14 E-value=49 Score=24.17 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=7.2
Q ss_pred cc-cChhhhH
Q 046942 78 AD-IGLDCCR 86 (134)
Q Consensus 78 ~~-Igp~CC~ 86 (134)
-+ +||+||-
T Consensus 82 C~iLGPdCcI 91 (131)
T 1ebo_A 82 CHILGPDCRI 91 (131)
T ss_dssp HHHHGGGGGC
T ss_pred ceecCCcccc
Confidence 34 9999994
No 6
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=10.50 E-value=1.5e+02 Score=19.90 Aligned_cols=33 Identities=21% Similarity=0.590 Sum_probs=20.2
Q ss_pred HhhhhhcccchHHHHHHHHHhCccccChhhhHHHHhhh
Q 046942 55 CWNALMALKSCSNEIVIFFLNGQADIGLDCCRAIDTIT 92 (134)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~Igp~CC~Ai~~i~ 92 (134)
|=+.+..+-.|.. ++.|.....+.||..++.+.
T Consensus 4 C~~v~~~L~pCl~-----Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 4 CGAVTSDLSPCLT-----YLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp SHHHHHHHHHHHH-----HHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH-----HHcCCCCCCCchhhHHHHHH
Confidence 3344444445533 34554448899999998874
No 7
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=10.25 E-value=1.2e+02 Score=19.09 Aligned_cols=17 Identities=18% Similarity=0.712 Sum_probs=13.6
Q ss_pred ccChhhhHHHHhhhcCcc
Q 046942 79 DIGLDCCRAIDTITHNCW 96 (134)
Q Consensus 79 ~Igp~CC~Ai~~i~~~CW 96 (134)
...++||.+++.. ..|.
T Consensus 20 ~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 20 RPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp STTHHHHHHHHHH-HHHH
T ss_pred CCCHHHHHhhCCC-CCCC
Confidence 4889999999975 5674
No 8
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=9.77 E-value=50 Score=18.81 Aligned_cols=11 Identities=27% Similarity=1.075 Sum_probs=8.1
Q ss_pred cCcccccccCC
Q 046942 93 HNCWPAMLTSL 103 (134)
Q Consensus 93 ~~CWP~mfps~ 103 (134)
-+|||.+-|..
T Consensus 17 crcwptvtpgv 27 (33)
T 2knp_A 17 CRCWPTVTPGV 27 (33)
T ss_dssp CCEEECSSTTE
T ss_pred eeeccccCCCe
Confidence 47999887654
No 9
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=8.93 E-value=1.9e+02 Score=18.96 Aligned_cols=60 Identities=22% Similarity=0.465 Sum_probs=32.5
Q ss_pred HhhhhhcccchHHHHHHHHHhCccccChhhhHHHHhhh-------c---Cc--ccccccCC-CCCcchhhhhhhcccc
Q 046942 55 CWNALMALKSCSNEIVIFFLNGQADIGLDCCRAIDTIT-------H---NC--WPAMLTSL-GFTTEEGNILRGYCDA 119 (134)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~Igp~CC~Ai~~i~-------~---~C--WP~mfps~-pF~~~e~~~LKg~Cs~ 119 (134)
|=+.+.++..|..- ++|...-.++||.+++.+. | .| .-...... +....-+.-|-+.|.-
T Consensus 3 C~~v~~~L~pCl~y-----v~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv 75 (91)
T 1siy_A 3 CGQVQGNLAQCIGF-----LQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGV 75 (91)
T ss_dssp TTTTHHHHHHHHHH-----HTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHhccCcHHH-----HhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCC
Confidence 33444455556543 2333237788999999873 1 34 43332333 4555445566677755
No 10
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=8.93 E-value=1.5e+02 Score=19.61 Aligned_cols=60 Identities=23% Similarity=0.560 Sum_probs=36.4
Q ss_pred HhhhhhcccchHHHHHHHHHhCccccChhhhHHHHhhh-------c-----CcccccccCC-CCCcchhhhhhhcccc
Q 046942 55 CWNALMALKSCSNEIVIFFLNGQADIGLDCCRAIDTIT-------H-----NCWPAMLTSL-GFTTEEGNILRGYCDA 119 (134)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~Igp~CC~Ai~~i~-------~-----~CWP~mfps~-pF~~~e~~~LKg~Cs~ 119 (134)
|=+.+.++..|..-+. .|. ...++||.+++.+. | .|.-...++. ++.+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y~~----~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv 76 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVR----GGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGV 76 (92)
T ss_dssp HHHHHHHHGGGHHHHH----HCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTC
T ss_pred hHHHHHhccCcHHHHc----CCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCC
Confidence 5566666777766543 232 37789999999875 3 4453333333 4555445566677755
Done!