Query 046942
Match_columns 134
No_of_seqs 98 out of 100
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046942.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046942hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 22.6 22 0.0016 22.3 2.1 61 55-120 4-78 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 17.7 33 0.0024 21.4 2.1 33 55-92 3-35 (91)
3 d1hssa_ a.52.1.2 (A:) 0.19 alp 9.7 63 0.0046 21.7 1.8 34 62-96 13-49 (120)
4 d1g60a_ c.66.1.11 (A:) Methylt 8.9 60 0.0044 21.7 1.4 25 83-107 11-35 (256)
5 d1ppjd2 f.23.11.1 (D:196-241) 8.6 1.1E+02 0.0082 17.0 2.3 17 3-19 9-25 (46)
6 d1gvda_ a.4.1.3 (A:) c-Myb, DN 8.6 43 0.0031 18.7 0.4 17 103-119 4-20 (52)
7 d1gv2a2 a.4.1.3 (A:144-190) c- 8.3 46 0.0033 18.2 0.4 17 103-119 2-18 (47)
8 d1k8rb_ d.15.1.5 (B:) Protein 7.7 74 0.0054 20.6 1.3 20 59-79 14-33 (95)
9 d2bwba1 a.5.2.1 (A:328-371) DS 6.9 1.4E+02 0.01 16.4 2.2 29 48-76 16-44 (44)
10 d1w0ta_ a.4.1.4 (A:) DNA-bindi 6.2 66 0.0048 17.8 0.4 17 103-119 3-19 (52)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=22.62 E-value=22 Score=22.28 Aligned_cols=61 Identities=20% Similarity=0.528 Sum_probs=35.8
Q ss_pred HhhhhhcccchHHHHHHHHHhCccc-cChhhhHHHHhhhc------------Cccccccc-CCCCCcchhhhhhhccccC
Q 046942 55 CWNALMALKSCSNEIVIFFLNGQAD-IGLDCCRAIDTITH------------NCWPAMLT-SLGFTTEEGNILRGYCDAS 120 (134)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-Igp~CC~Ai~~i~~------------~CWP~mfp-s~pF~~~e~~~LKg~Cs~~ 120 (134)
|=+.+.++-.|.. |++|... -++.||.+++.+.+ +|.-.... ..++...-..-|=..|.-.
T Consensus 4 C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 78 (93)
T d1fk5a_ 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence 5555556666643 4566655 78999999998763 23333222 2355554455566677543
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=17.72 E-value=33 Score=21.37 Aligned_cols=33 Identities=18% Similarity=0.582 Sum_probs=22.9
Q ss_pred HhhhhhcccchHHHHHHHHHhCccccChhhhHHHHhhh
Q 046942 55 CWNALMALKSCSNEIVIFFLNGQADIGLDCCRAIDTIT 92 (134)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~Igp~CC~Ai~~i~ 92 (134)
|=+.+..+-.|.. |++|.....+.||.+++.+.
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~ 35 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLH 35 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHH
Confidence 5555566666644 45565459999999998875
No 3
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=9.71 E-value=63 Score=21.73 Aligned_cols=34 Identities=26% Similarity=0.601 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHHhCcc-c--cChhhhHHHHhhhcCcc
Q 046942 62 LKSCSNEIVIFFLNGQA-D--IGLDCCRAIDTITHNCW 96 (134)
Q Consensus 62 v~gC~~EI~~~fl~G~~-~--Igp~CC~Ai~~i~~~CW 96 (134)
+++|-..+.+- ..|.. . +...||+-+..|.+.|+
T Consensus 13 L~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CR 49 (120)
T d1hssa_ 13 LPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCR 49 (120)
T ss_dssp CTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTH
T ss_pred cHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccc
Confidence 34576665443 33332 1 66889999999998885
No 4
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=8.87 E-value=60 Score=21.67 Aligned_cols=25 Identities=8% Similarity=0.272 Sum_probs=22.6
Q ss_pred hhhHHHHhhhcCcccccccCCCCCc
Q 046942 83 DCCRAIDTITHNCWPAMLTSLGFTT 107 (134)
Q Consensus 83 ~CC~Ai~~i~~~CWP~mfps~pF~~ 107 (134)
+|.+.+..+.+++.-.++.++||..
T Consensus 11 Dcle~l~~lpd~sVdliitdPPY~~ 35 (256)
T d1g60a_ 11 NCFDFLDQVENKSVQLAVIDPPYNL 35 (256)
T ss_dssp CHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred cHHHHHhhCcCCCcCEEEECCCCCC
Confidence 5999999999999999999999964
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.56 E-value=1.1e+02 Score=17.00 Aligned_cols=17 Identities=29% Similarity=0.383 Sum_probs=10.7
Q ss_pred chhHHHHHHHHHHHHHH
Q 046942 3 MALKHVFFILALTCLIM 19 (134)
Q Consensus 3 ma~k~~~~ll~v~~~i~ 19 (134)
|++|.++++..++.+..
T Consensus 9 mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67787776665555443
No 6
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.56 E-value=43 Score=18.69 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=13.6
Q ss_pred CCCCcchhhhhhhcccc
Q 046942 103 LGFTTEEGNILRGYCDA 119 (134)
Q Consensus 103 ~pF~~~e~~~LKg~Cs~ 119 (134)
-|+++||...|+..-..
T Consensus 4 g~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 4 GPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47899999999986544
No 7
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.27 E-value=46 Score=18.24 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=13.0
Q ss_pred CCCCcchhhhhhhcccc
Q 046942 103 LGFTTEEGNILRGYCDA 119 (134)
Q Consensus 103 ~pF~~~e~~~LKg~Cs~ 119 (134)
.||+.||..+|...-..
T Consensus 2 ~~WT~eED~~L~~~v~~ 18 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKR 18 (47)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47899999998876544
No 8
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=7.66 E-value=74 Score=20.55 Aligned_cols=20 Identities=5% Similarity=-0.003 Sum_probs=14.2
Q ss_pred hhcccchHHHHHHHHHhCccc
Q 046942 59 LMALKSCSNEIVIFFLNGQAD 79 (134)
Q Consensus 59 l~~v~gC~~EI~~~fl~G~~~ 79 (134)
..++.||.+||+.-.+ .+++
T Consensus 14 ~vni~gC~~ai~~~~L-kK~~ 33 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIAL-KKFS 33 (95)
T ss_dssp EEECCSCHHHHHHHHH-HHHT
T ss_pred EEEeccCHHHHHHHHH-HhcC
Confidence 5789999999766544 4444
No 9
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.86 E-value=1.4e+02 Score=16.38 Aligned_cols=29 Identities=21% Similarity=0.089 Sum_probs=24.3
Q ss_pred CCCCchhHhhhhhcccchHHHHHHHHHhC
Q 046942 48 GSGGLTECWNALMALKSCSNEIVIFFLNG 76 (134)
Q Consensus 48 ~~~~~~~Cwssl~~v~gC~~EI~~~fl~G 76 (134)
|..|...|..+|....|-+..-+..+++|
T Consensus 16 GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~g 44 (44)
T d2bwba1 16 GFFDFDRNVAALRRSGGSVQGALDSLLNG 44 (44)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHhCc
Confidence 44477889999999999999888888876
No 10
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.24 E-value=66 Score=17.76 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=13.1
Q ss_pred CCCCcchhhhhhhcccc
Q 046942 103 LGFTTEEGNILRGYCDA 119 (134)
Q Consensus 103 ~pF~~~e~~~LKg~Cs~ 119 (134)
-++++||...|+..-..
T Consensus 3 ~~WT~eED~~L~~~v~~ 19 (52)
T d1w0ta_ 3 QAWLWEEDKNLRSGVRK 19 (52)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37899999999876544
Done!