BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046944
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 152/330 (46%), Gaps = 64/330 (19%)
Query: 52 QNYKVFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKI 111
QN++ FA T+NV G +P E + + WL D+Y +GFQE+ + + +
Sbjct: 6 QNFRFFAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKE- 62
Query: 112 FTKWNSLIREALNKKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRS 171
+W + E L+ Y KL +L VGI + ++++
Sbjct: 63 -EEWFKAVSEGLHPDAKYAKVKLIRL-----------------------VGIMLLLYVKQ 98
Query: 172 DLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNS 231
+ YI VG GIMG +GNKG V++RFQ + TS C V SHLA+ +E + RN
Sbjct: 99 EHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYER--RNQ 156
Query: 232 DVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRI-SLPEATTRLLVERSEWNVLL 290
D +I SR F + P I +HD ++ LGDLNYRI L + L+E ++ +L
Sbjct: 157 DYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLY 216
Query: 291 ENDQAK---------------------------------NGKKLRSPAWCDRIIWCGRGL 317
DQ K +K R+PAWCDRI+W G+ +
Sbjct: 217 AYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKGKNI 276
Query: 318 KQHLYARGES-KLSDHRPVKAIFSVEVRVL 346
Q Y + K SDH+PV ++F + VRV+
Sbjct: 277 TQLSYQSHMALKTSDHKPVSSVFDIGVRVV 306
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 152/330 (46%), Gaps = 64/330 (19%)
Query: 52 QNYKVFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKI 111
QN++ FA T+NV G +P E + + WL D+Y +GFQE+ + + +
Sbjct: 3 QNFRFFAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKE- 59
Query: 112 FTKWNSLIREALNKKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRS 171
+W + E L+ Y KL +L VGI + ++++
Sbjct: 60 -EEWFKAVSEGLHPDAKYAKVKLIRL-----------------------VGIMLLLYVKQ 95
Query: 172 DLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNS 231
+ YI VG GIMG +GNKG V++RFQ + TS C V SHLA+ +E + RN
Sbjct: 96 EHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYER--RNQ 153
Query: 232 DVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRI-SLPEATTRLLVERSEWNVLL 290
D +I SR F + P I +HD ++ LGDLNYRI L + L+E ++ +L
Sbjct: 154 DYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLY 213
Query: 291 ENDQAK---------------------------------NGKKLRSPAWCDRIIWCGRGL 317
DQ K +K R+PAWCDRI+W G+ +
Sbjct: 214 AYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKGKNI 273
Query: 318 KQHLYARGES-KLSDHRPVKAIFSVEVRVL 346
Q Y + K SDH+PV ++F + VRV+
Sbjct: 274 TQLSYQSHMALKTSDHKPVSSVFDIGVRVV 303
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 152/338 (44%), Gaps = 66/338 (19%)
Query: 50 ETQNYKVFASTWNVGGVAPTEDIDMEDWLHTPNT-LCDIYVLGFQEIVPLRASNVLGSEN 108
E +N K+F +++N+ G + T +E+WL NT L DIYV+GFQEIV L V+ ++
Sbjct: 21 EHKNVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADP 78
Query: 109 NKIFTKWNSLIREALNKKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVW 168
K +W S ++ LN K PG+ + Q+VG + ++
Sbjct: 79 AKR-REWESCVKRLLNGK-------------------CTSGPGYVQLRSGQLVGTALMIF 118
Query: 169 IRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKY 228
+ P I++ + G+ G GNKG+V++RF +T CF+ SHLA+G DE
Sbjct: 119 CKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDE-- 176
Query: 229 RNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERSEWNV 288
R+ D I S F RG R+I +HD V+ GD NYRISL + + + +
Sbjct: 177 RDHDYRTIASGLRFRRG------RSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSY 230
Query: 289 LLENDQAK----NGK-----------------------------KLRSPAWCDRIIWCGR 315
L E DQ GK K R PAW DRI++ G
Sbjct: 231 LFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGE 290
Query: 316 GLKQHLYARGESKLSDHRPVKAIFSVE-VRVLRTLKGI 352
L H Y SDHRP+ A + V+V R K I
Sbjct: 291 -LVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKI 327
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 121/344 (35%), Gaps = 96/344 (27%)
Query: 56 VFASTWNVGGVAPTEDIDMEDWLH-----------TPNTLCDIYVLGFQEIVPLRASNVL 104
VF TWN+G V P +++ W T DIYV G QE N +
Sbjct: 10 VFIGTWNMGSVPPPKNV--TSWFTSKGLGKTLDEVTVTIPHDIYVFGTQE-------NSV 60
Query: 105 GSENNKIFTKWNSLIREALNKKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIF 164
G +W L+R L + T +R I + + I
Sbjct: 61 GDR------EWLDLLRGGLKELTDLD---------------------YRPIAMQSLWNIK 93
Query: 165 ISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGKEG 224
++V ++ + I H S S V GI LGNKG+V V F TSF FV HL SG ++
Sbjct: 94 VAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK- 152
Query: 225 DEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERS 284
RN + +IL S LN L + GDLNYR+ + + R
Sbjct: 153 -TARRNQNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRK 210
Query: 285 EWNVLLENDQAK----------------------------------------NGKKLRSP 304
E+ LL DQ G + P
Sbjct: 211 EFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVP 270
Query: 305 AWCDRIIWCGRGLKQHLYARG-----ESKLSDHRPVKAIFSVEV 343
+WCDRI+W + H+ + SDH PV F V V
Sbjct: 271 SWCDRILWKSYP-ETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 131/342 (38%), Gaps = 91/342 (26%)
Query: 52 QNYKVFASTWNVGG---VAPTEDIDMEDWL--HTPNTLCDIYVLGFQEIVPLRASNVLGS 106
+N +F +TWN+ G + P+ ++++L + D+YV+G QE G
Sbjct: 24 RNVALFVATWNMQGQKELPPS----LDEFLLPAEADYAQDLYVIGVQE----------GC 69
Query: 107 ENNKIFTKWNSLIREALNKKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFIS 166
+ + +W + ++E L P + + +++S
Sbjct: 70 SDRR---EWETRLQETLG-------------------------PHYVLLSSAAHGVLYMS 101
Query: 167 VWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGKEGDE 226
++IR DL + S V I+ + KG++ + F + TSF F+ SH SG + E
Sbjct: 102 LFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAE 161
Query: 227 K---YRNSDVAEILSRTSFPRGPLLNLPRNILDH-DRVILLGDLNYRISLPEATTRLLVE 282
+ Y + A +L R P + ++ D V GD N+R+S L+
Sbjct: 162 RLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLC 221
Query: 283 RS---EWNVLLENDQ---------------------------------AKNGKKLRSPAW 306
+ + LL++DQ + K R+P++
Sbjct: 222 QGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSY 281
Query: 307 CDRIIWCGRGLKQHLYARGES----KLSDHRPVKAIFSVEVR 344
DR+++ R S K SDHRPV +F V+VR
Sbjct: 282 TDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVR 323
>pdb|4GAE|A Chain A, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
pdb|4GAE|B Chain B, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
Length = 426
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 247 LLNLPRNILDHDRVILLGDLNYR-ISLPEATTRLLVERSEWNVLLENDQAKNGKKLRSPA 305
L L +NI D+ +IL GD + I + ++++ + L A K+ + A
Sbjct: 82 LKELVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALA 141
Query: 306 WCDRIIWCGRGLKQHLYARGESKLSDHRPVKAIFSVEVRVLRTLKGIQSFFLSERFERIT 365
+ I+ G LK+ L +K+ PV + S + L K I++ L + F +I
Sbjct: 142 NKESIVSAGFFLKKLLNIHKNAKI---IPVDSEHSAIFQCLDNNKVIKTKCLQDNFSKIN 198
Query: 366 SHFEMSLNDCFLCSS 380
++N FLCSS
Sbjct: 199 -----NINKIFLCSS 208
>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU8|B Chain B, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU9|A Chain A, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AU9|B Chain B, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AUA|A Chain A, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
pdb|3AUA|B Chain B, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
Length = 488
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 247 LLNLPRNILDHDRVILLGDLNYR-ISLPEATTRLLVERSEWNVLLENDQAKNGKKLRSPA 305
L L +NI D+ +IL GD + I + ++++ + L A K+ + A
Sbjct: 144 LKELVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALA 203
Query: 306 WCDRIIWCGRGLKQHLYARGESKLSDHRPVKAIFSVEVRVLRTLKGIQSFFLSERFERIT 365
+ I+ G LK+ L +K+ PV + S + L K +++ L + F +I
Sbjct: 204 NKESIVSAGFFLKKLLNIHKNAKII---PVDSEHSAIFQCLDNNKVLKTKCLQDNFSKIN 260
Query: 366 SHFEMSLNDCFLCSS 380
++N FLCSS
Sbjct: 261 -----NINKIFLCSS 270
>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
SortilinNTS3 IN Complex With Neurotensin
Length = 685
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 207 ETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDL 266
E S V + SGG G +R+SD A+ +T P PL + + + D ++ L
Sbjct: 100 ENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTE 159
Query: 267 N 267
N
Sbjct: 160 N 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,551,614
Number of Sequences: 62578
Number of extensions: 477866
Number of successful extensions: 934
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 16
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)