Query 046944
Match_columns 381
No_of_seqs 205 out of 1174
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 2.7E-87 5.9E-92 687.4 30.1 354 1-356 12-605 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 1.5E-72 3.3E-77 591.0 23.2 278 47-356 530-845 (1080)
3 smart00128 IPPc Inositol polyp 100.0 1.4E-63 3.1E-68 489.2 25.4 264 53-347 2-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 9.6E-53 2.1E-57 415.8 17.5 295 47-372 23-356 (460)
5 KOG0565 Inositol polyphosphate 99.9 3E-26 6.5E-31 201.4 12.1 141 151-293 2-145 (145)
6 PTZ00312 inositol-1,4,5-tripho 99.9 4.4E-22 9.6E-27 189.4 9.0 94 192-295 64-180 (356)
7 KOG1976 Inositol polyphosphate 99.5 5.7E-15 1.2E-19 141.2 5.4 70 193-272 154-232 (391)
8 PRK05421 hypothetical protein; 99.5 9.2E-13 2E-17 126.7 16.2 149 163-342 108-262 (263)
9 TIGR03395 sphingomy sphingomye 99.3 3.1E-11 6.7E-16 117.5 16.6 165 159-338 87-282 (283)
10 COG3568 ElsH Metal-dependent h 99.3 1.1E-10 2.4E-15 111.6 15.5 235 50-341 4-257 (259)
11 PRK11756 exonuclease III; Prov 99.3 2.4E-11 5.2E-16 116.5 10.2 151 56-268 1-154 (268)
12 KOG2756 Predicted Mg2+-depende 99.2 1.4E-10 3E-15 110.1 10.7 124 198-340 194-348 (349)
13 PF03372 Exo_endo_phos: Endonu 99.1 6.4E-11 1.4E-15 107.7 7.0 137 161-313 72-227 (249)
14 TIGR00633 xth exodeoxyribonucl 99.1 1E-09 2.2E-14 103.5 13.0 36 56-96 1-37 (255)
15 PTZ00297 pantothenate kinase; 99.1 7.8E-09 1.7E-13 119.3 20.3 95 162-268 102-206 (1452)
16 PRK13911 exodeoxyribonuclease 99.0 8.3E-09 1.8E-13 98.9 15.4 36 56-95 1-36 (250)
17 PLN03144 Carbon catabolite rep 99.0 3.1E-08 6.8E-13 105.1 18.6 62 208-284 417-479 (606)
18 smart00476 DNaseIc deoxyribonu 98.9 2.5E-08 5.5E-13 96.8 14.9 222 55-335 17-271 (276)
19 TIGR00195 exoDNase_III exodeox 98.9 1.8E-08 3.9E-13 95.8 12.8 35 56-95 1-35 (254)
20 PRK15251 cytolethal distending 98.8 6.6E-08 1.4E-12 93.2 13.3 218 55-337 24-268 (271)
21 COG0708 XthA Exonuclease III [ 98.7 4.5E-08 9.8E-13 93.9 6.9 110 57-222 2-113 (261)
22 KOG3873 Sphingomyelinase famil 98.6 1.4E-07 3E-12 93.1 9.1 243 50-347 3-298 (422)
23 COG3021 Uncharacterized protei 97.7 0.00017 3.6E-09 70.8 9.7 127 195-341 174-307 (309)
24 KOG2338 Transcriptional effect 97.5 0.00053 1.1E-08 70.7 9.2 105 164-281 203-313 (495)
25 PF14529 Exo_endo_phos_2: Endo 97.1 0.0015 3.3E-08 54.0 6.6 77 259-336 32-119 (119)
26 COG5239 CCR4 mRNA deadenylase, 93.8 0.42 9.1E-06 48.1 9.5 46 300-345 306-369 (378)
27 KOG3870 Uncharacterized conser 30.0 21 0.00046 36.7 0.6 16 255-270 350-365 (434)
28 COG2374 Predicted extracellula 25.2 1.7E+02 0.0037 32.7 6.4 72 207-289 620-703 (798)
29 cd00248 Mth938-like Mth938-lik 21.8 42 0.00092 27.9 0.9 34 58-93 28-61 (109)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=2.7e-87 Score=687.39 Aligned_cols=354 Identities=42% Similarity=0.766 Sum_probs=296.1
Q ss_pred CChHHHHHHHhhhccCCCCccccCCCCcc-cc---cc-cCC----------------------ccccc--------cccc
Q 046944 1 MWPRLVANKFLRKRLGSNSFVADFPSNDE-ET---LI-RIP----------------------SLDKQ--------QSLS 45 (381)
Q Consensus 1 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~-~~~----------------------~~~~~--------~~~~ 45 (381)
+|||+||||||||+++++||+||+.+.+. .+ .+ +.. ....+ ++.+
T Consensus 12 ~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 91 (621)
T PLN03191 12 FWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGVSVSKGYSSKHR 91 (621)
T ss_pred ccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCccccccccchhhh
Confidence 69999999999999999999999764311 10 00 000 00011 1222
Q ss_pred --------CCCCCccceEEEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHH
Q 046944 46 --------HDNKETQNYKVFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNS 117 (381)
Q Consensus 46 --------~~~~~~~~l~V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~ 117 (381)
..|++.++++|||+||||||+.|+.+++|.+||..+ .++|||||||||+|||+|+||++++++.+.++|+.
T Consensus 92 r~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~-~p~DiyviG~QE~v~lna~nv~~~~~~~~~~~W~~ 170 (621)
T PLN03191 92 RGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTE-EPADIYIIGFQEVVPLNAGNVLGAEDSRPIPKWEA 170 (621)
T ss_pred ccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCC-CCCCEEEEeeEEeccCcHhhhhccccCCchhhHHH
Confidence 235788999999999999999999999999999865 78899999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcch------hhhhc------------------------------------------------------
Q 046944 118 LIREALNKKTPYQDN------KLRKL------------------------------------------------------ 137 (381)
Q Consensus 118 ~i~~~L~~~~~~~~~------~~~~~------------------------------------------------------ 137 (381)
+|+++||+..+.... ..+|+
T Consensus 171 ~i~~tl~~~~~~~~~~k~~S~ppsp~~~~~~~~~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (621)
T PLN03191 171 IIRRTLNKSNKPESKHKSYSAPPSPVLRTSIVADELAEEVDSLPLEMMNNEFIDAATGCPSLEPERNKNIGWPEHSLDAT 250 (621)
T ss_pred HHHHHHhccCCCCCccccCCCCCCcccCCcchhhhhhhhcccChhhhcccccccccccccccchhhccccCCcccccccC
Confidence 999999987653200 00000
Q ss_pred ----------------ccCC----CC-------------------------C----------------------------
Q 046944 138 ----------------QSIS----PD-------------------------N---------------------------- 144 (381)
Q Consensus 138 ----------------~~~~----~~-------------------------~---------------------------- 144 (381)
++.+ ++ +
T Consensus 251 ~~~~~~~~~l~r~~s~~~r~~~~~~e~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (621)
T PLN03191 251 PQVVSSNSKLRRVFSSSARLGFKWPENPSLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVS 330 (621)
T ss_pred cccccccccceeeeccccccccCCCCCccccCchhhcccccccchhhhccccccccccchhhcccccccccccccccccc
Confidence 0000 00 0
Q ss_pred --------C------------------CCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcce
Q 046944 145 --------D------------------VQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGS 198 (381)
Q Consensus 145 --------~------------------~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~ 198 (381)
. ......|++|.|+||+||+|+||+|++++++|++|++++|+||+||++|||||
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGA 410 (621)
T PLN03191 331 DRSSEAEDDTFKEVPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGS 410 (621)
T ss_pred cccCCCcccccccCChhhhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeecccccccccee
Confidence 0 00123699999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHH
Q 046944 199 VSVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTR 278 (381)
Q Consensus 199 V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~ 278 (381)
|+|+|.+++++||||||||+||++++++++||+|+.+|++++.|........|..|.+||+|||||||||||++++++++
T Consensus 411 VaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~ 490 (621)
T PLN03191 411 VSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVR 490 (621)
T ss_pred EEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccccccCCHHHHH
Confidence 99999999999999999999999877788999999999999999764434567889999999999999999999999999
Q ss_pred HHHhhhcHHHHhccccc------------------------------c--------cCCCCCCCcccCeeeeecCcceee
Q 046944 279 LLVERSEWNVLLENDQA------------------------------K--------NGKKLRSPAWCDRIIWCGRGLKQH 320 (381)
Q Consensus 279 ~li~~~~~~~Ll~~DQL------------------------------d--------t~~k~R~PSWcDRIL~~~~~~~~~ 320 (381)
++|.+++|..||++||| + |++|+|+|||||||||++++++++
T Consensus 491 ~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l 570 (621)
T PLN03191 491 KLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQL 570 (621)
T ss_pred HHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCCccccccccccccCccccchhheEeecCCCceEe
Confidence 99999999999999999 1 356899999999999999999999
Q ss_pred eeccCCCCcCCCcCeeeeEEEEEEeccchhhhhhhh
Q 046944 321 LYARGESKLSDHRPVKAIFSVEVRVLRTLKGIQSFF 356 (381)
Q Consensus 321 ~Y~~~~~~~SDHrPV~a~f~v~v~~~~~~~~~~~~~ 356 (381)
.|.+.++.+||||||+|.|.++|+++++. ++|+.+
T Consensus 571 ~Y~s~ei~~SDHRPV~A~F~v~V~~id~~-k~q~~~ 605 (621)
T PLN03191 571 CYKRSEIRLSDHRPVSSMFLVEVEVFDHR-KLQRAL 605 (621)
T ss_pred EeccCCcccCCchhcceEEEEEEEecCHH-HHHhhh
Confidence 99999999999999999999999999985 466554
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-72 Score=590.98 Aligned_cols=278 Identities=40% Similarity=0.694 Sum_probs=256.4
Q ss_pred CCCCccceEEEEEEeeCCCCCCCCCCccccccCCC-----CCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHH
Q 046944 47 DNKETQNYKVFASTWNVGGVAPTEDIDMEDWLHTP-----NTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIRE 121 (381)
Q Consensus 47 ~~~~~~~l~V~V~TWNv~g~~p~~~~dL~~wl~~~-----~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~ 121 (381)
.+++.++++||||||||+|+.+.-..+|.+||.+. ..++|||||||||+|.|+|++++.+. ......|++.|++
T Consensus 530 eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As-~tk~~~Wee~i~~ 608 (1080)
T KOG0566|consen 530 EYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSAS-TTKRRFWEEKILK 608 (1080)
T ss_pred hhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccC-hHHHHHHHHHHHH
Confidence 46899999999999999996544334699999763 23699999999999999999998864 4567899999999
Q ss_pred HHhccCCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEE
Q 046944 122 ALNKKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSV 201 (381)
Q Consensus 122 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i 201 (381)
+||... .+|+++.|.||+|++|.+|+|.++.++|++|..++++||++|..||||||+|
T Consensus 609 ~Ln~~~----------------------~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAI 666 (1080)
T KOG0566|consen 609 TLNRYK----------------------NKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAI 666 (1080)
T ss_pred HhcCCC----------------------CceEEEehhhhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEE
Confidence 999742 3799999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHH
Q 046944 202 RFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLV 281 (381)
Q Consensus 202 ~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li 281 (381)
||.++.|+|||||+||+||+. +.++||.||.+|.++++|+.+ .+|.+||+|||||||||||++++++|+.+|
T Consensus 667 rf~~~~TsfCFv~SHlAAG~s--nv~ERn~DY~tI~r~l~Fp~G------r~I~~HD~ifW~GDFNYRI~l~nEEVr~~v 738 (1080)
T KOG0566|consen 667 RFVYHATSFCFVCSHLAAGQS--NVEERNEDYKTIARKLRFPRG------RMIFSHDYIFWLGDFNYRIDLSNEEVRRLV 738 (1080)
T ss_pred EEEeccccEEEEecccccccc--hHhhhhhhHHHHHHhccccCC------ccccCCceEEEecccceeecCCHHHHHHHH
Confidence 999999999999999999987 788999999999999999886 578999999999999999999999999999
Q ss_pred hhhcHHHHhccccc---------------------------------ccCCCCCCCcccCeeeeecCcceeeeeccCCCC
Q 046944 282 ERSEWNVLLENDQA---------------------------------KNGKKLRSPAWCDRIIWCGRGLKQHLYARGESK 328 (381)
Q Consensus 282 ~~~~~~~Ll~~DQL---------------------------------dt~~k~R~PSWcDRIL~~~~~~~~~~Y~~~~~~ 328 (381)
..++|+.|+++||| ||++|.|+|||||||||++..+.++.|.+++++
T Consensus 739 ~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YDTSeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~ 818 (1080)
T KOG0566|consen 739 RNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYDTSEKCRTPAWTDRILWRGEKLELLSYKRAELK 818 (1080)
T ss_pred HhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCCCccccchhccCccchhhheecccccccccccccccc
Confidence 99999999999999 788999999999999999999999999999999
Q ss_pred cCCCcCeeeeEEEEEEeccchhhhhhhh
Q 046944 329 LSDHRPVKAIFSVEVRVLRTLKGIQSFF 356 (381)
Q Consensus 329 ~SDHrPV~a~f~v~v~~~~~~~~~~~~~ 356 (381)
+||||||+|.|+++|..++..|+.+ .|
T Consensus 819 ~SDHRPV~A~~~a~i~~Vd~~kk~~-l~ 845 (1080)
T KOG0566|consen 819 TSDHRPVYAIFRAEIFEVDEQKKLR-LF 845 (1080)
T ss_pred ccCCCceEEEEEEEEEEEcHHHHHH-HH
Confidence 9999999999999999999877663 54
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.4e-63 Score=489.17 Aligned_cols=264 Identities=38% Similarity=0.664 Sum_probs=228.6
Q ss_pred ceEEEEEEeeCCCCC-CCCCCccccccCCC-----CCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhcc
Q 046944 53 NYKVFASTWNVGGVA-PTEDIDMEDWLHTP-----NTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKK 126 (381)
Q Consensus 53 ~l~V~V~TWNv~g~~-p~~~~dL~~wl~~~-----~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~ 126 (381)
+++|+|+|||||+.. |+. .+|.+||... ..+||||||||||++++.+.+++.. ++.....|.+.+..+|+..
T Consensus 2 ~~~v~v~TwNv~~~~~~p~-~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~-~~~~~~~W~~~i~~~l~~~ 79 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPK-VDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLET-IAGKERLWSKLIESSLNGD 79 (310)
T ss_pred ceEEEEEEEECCCccCCCh-hhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhc-cchhHHHHHHHHHHhcCCC
Confidence 689999999999975 332 4688999752 2679999999999999888887543 4567889999999988631
Q ss_pred CCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEe
Q 046944 127 TPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLY 206 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~ 206 (381)
..|.++.+.+|+||+|+||+|.++..+|+++.++++++|++|.+||||||++++.+.
T Consensus 80 -----------------------~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~ 136 (310)
T smart00128 80 -----------------------GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLS 136 (310)
T ss_pred -----------------------CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEc
Confidence 379999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCCh-HHHHHHHhhhc
Q 046944 207 ETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPE-ATTRLLVERSE 285 (381)
Q Consensus 207 ~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~-~~v~~li~~~~ 285 (381)
++.||||||||++|+. +.++||+|+.+|++.+.|+... ...+.+||++||||||||||+.++ +++.+++++++
T Consensus 137 ~~~~~fv~~HL~a~~~--~~~~R~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~ 210 (310)
T smart00128 137 DTSFCFVNSHLAAGAS--NVEQRNQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKE 210 (310)
T ss_pred CcEEEEEeeccccccc--hhhhhHHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCc
Confidence 9999999999999986 6789999999999999887531 112568999999999999999887 88999999999
Q ss_pred HHHHhccccc----------------------------------ccCCCCCCCcccCeeeeec--Ccceeee-ecc-CCC
Q 046944 286 WNVLLENDQA----------------------------------KNGKKLRSPAWCDRIIWCG--RGLKQHL-YAR-GES 327 (381)
Q Consensus 286 ~~~Ll~~DQL----------------------------------dt~~k~R~PSWcDRIL~~~--~~~~~~~-Y~~-~~~ 327 (381)
|..|+++||| +++.|+|+|||||||||+. ..+.+.. |.+ .++
T Consensus 211 ~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~t~~Yd~~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~ 290 (310)
T smart00128 211 FDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSVGTETYDTSEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMEL 290 (310)
T ss_pred HHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCCCCccccCcccccCcchhheehhhccCCCceecccccCCCcc
Confidence 9999999999 2345669999999999995 3456655 876 579
Q ss_pred CcCCCcCeeeeEEEEEEecc
Q 046944 328 KLSDHRPVKAIFSVEVRVLR 347 (381)
Q Consensus 328 ~~SDHrPV~a~f~v~v~~~~ 347 (381)
.+||||||+|.|.+.+..++
T Consensus 291 ~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 291 TTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred CCcCcccccEEEEEEEEecC
Confidence 99999999999999998764
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-53 Score=415.78 Aligned_cols=295 Identities=32% Similarity=0.501 Sum_probs=255.3
Q ss_pred CCCCccceEEEEEEeeCCCCCCCCCCccccccCC---CCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHH
Q 046944 47 DNKETQNYKVFASTWNVGGVAPTEDIDMEDWLHT---PNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREAL 123 (381)
Q Consensus 47 ~~~~~~~l~V~V~TWNv~g~~p~~~~dL~~wl~~---~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L 123 (381)
++...+++.+|++|+|.+|+.|.. ++++||-+ ....+|+||+||||+++++++.+++..-......|++.+-..|
T Consensus 23 k~~~~~~~~~f~~~~n~~~~~~k~--~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~rl~~wes~~~~~L 100 (460)
T COG5411 23 KYVIEKDVSIFVSTFNPPGKPPKA--STKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYDRLRIWESKVLDCL 100 (460)
T ss_pred hheeecceeeEeccccCCCCCchh--hhhhhcccccccccccceEEeccceeeeccchhhccCCcccccchhHHHHHHHh
Confidence 356778999999999999999843 47889876 2357999999999999999999998754566789999999999
Q ss_pred hccCCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEE
Q 046944 124 NKKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRF 203 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~ 203 (381)
|.. . ..++|.++.+.||+|+++.||.+.+..+.+.+|....-+||++|..+|||+|++++
T Consensus 101 n~~-~-------------------~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~ 160 (460)
T COG5411 101 NGA-Q-------------------SDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRF 160 (460)
T ss_pred ccc-c-------------------cCCceEEecchhccCcceEEeeeccccceeccccccccccccceecccccccceeE
Confidence 952 1 12489999999999999999999999999999999999999999999999999999
Q ss_pred EEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhh
Q 046944 204 QLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVER 283 (381)
Q Consensus 204 ~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~ 283 (381)
....+.+|||++||+||.. +.++|+.||+.|.+.+.|+++ ..|.+||++||+|||||||+..+++++..+..
T Consensus 161 ~~~~t~~cFv~shlaag~~--N~eeR~~Dy~~I~~~i~f~~g------~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~ 232 (460)
T COG5411 161 NYERTSFCFVNSHLAAGVN--NIEERIFDYRSIASNICFSRG------LRIYDHDTIFWLGDLNYRVTSTNEEVRPEIAS 232 (460)
T ss_pred EeecCCcEEEecchhcccc--cHHHHHHHHHHHHHheecCCC------ceecccceEEEecccCceeecCchhcchhhhC
Confidence 9999999999999999986 788999999999999999875 46889999999999999999999999888776
Q ss_pred hc--HHHHhccccc---------------------------------ccCCCCCCCcccCeeeeecCcceeeeeccCC-C
Q 046944 284 SE--WNVLLENDQA---------------------------------KNGKKLRSPAWCDRIIWCGRGLKQHLYARGE-S 327 (381)
Q Consensus 284 ~~--~~~Ll~~DQL---------------------------------dt~~k~R~PSWcDRIL~~~~~~~~~~Y~~~~-~ 327 (381)
.+ +.+|+++||| ++++|.|+|||||||||++..+.++.|.+++ +
T Consensus 233 ~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~ydtsdk~RiPsWtDRIl~~s~~~~p~sY~sip~l 312 (460)
T COG5411 233 DDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYDTSDKGRIPSWTDRILYKSEQLTPHSYSSIPHL 312 (460)
T ss_pred CcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCccccccccccCCchhhhhhhhccccccccccccCce
Confidence 66 7779999999 4578899999999999999999999999976 9
Q ss_pred CcCCCcCeeeeEEEEEEeccchhhhhhhhHHHHHHhhcccccccc
Q 046944 328 KLSDHRPVKAIFSVEVRVLRTLKGIQSFFLSERFERITSHFEMSL 372 (381)
Q Consensus 328 ~~SDHrPV~a~f~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (381)
.+||||||+|+|++.+...+..+ +-..+.+-.-+.++.+.+...
T Consensus 313 ~~SDHrPV~a~~~~~i~~~d~~~-k~~~~~~l~~~~~t~~~~~~~ 356 (460)
T COG5411 313 MISDHRPVYATFRAKIKVVDPSK-KEGLIEKLYAEYKTELGEAGD 356 (460)
T ss_pred eecCCCeEEEEEecceEEeCcch-hhhhhhhhhhhhccccccccC
Confidence 99999999999999999999754 333453333344555555544
No 5
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3e-26 Score=201.35 Aligned_cols=141 Identities=45% Similarity=0.598 Sum_probs=125.3
Q ss_pred CeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEeCeEEEEEeeccCCCCCCCChhH-H
Q 046944 151 GFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKY-R 229 (381)
Q Consensus 151 ~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~-R 229 (381)
.|.++.+++|+|+.+.+|+++++..++.+++++++++|+||++||||+|++++.++++.+|||++||+||..+ ..+ |
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~--~~~~r 79 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHK--VYERR 79 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchh--hHHHh
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999874 445 9
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCccccc-cccEEEeCccccccCCC-hHHHHHHHhhhcHHHHhccc
Q 046944 230 NSDVAEILSRTSFPRGPLLNLPRNILD-HDRVILLGDLNYRISLP-EATTRLLVERSEWNVLLEND 293 (381)
Q Consensus 230 n~d~~~I~~~~~f~~~~~~~~p~~i~~-~d~vf~~GDlNyRi~~~-~~~v~~li~~~~~~~Ll~~D 293 (381)
|+++.+|+..+.|........|..+.. ||.|||+||||||+..+ +..+..++....|..|++.|
T Consensus 80 ~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 80 NEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred hccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 999999999999986543444554444 89999999999999977 77788888888888888765
No 6
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.86 E-value=4.4e-22 Score=189.36 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=70.0
Q ss_pred CCCCcceEEEEEEEeCeEEEEEeeccCCCCCCC---------ChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEE
Q 046944 192 CLGNKGSVSVRFQLYETSFCFVCSHLASGGKEG---------DEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVIL 262 (381)
Q Consensus 192 ~~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~~---------~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~ 262 (381)
.++.||.+.++++++++.|||||+||.++..+. +...|.+++..|+.+.. . .+.+++++||
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--~--------~~~~~~~lF~ 133 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--A--------FISPSDPLFI 133 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh--h--------ccCCCCcEEE
Confidence 488999999999999999999999999998652 44567788888886532 1 2345689999
Q ss_pred eCccccccCCC-h-HHHHHH------Hh------hhcHHHHhccccc
Q 046944 263 LGDLNYRISLP-E-ATTRLL------VE------RSEWNVLLENDQA 295 (381)
Q Consensus 263 ~GDlNyRi~~~-~-~~v~~l------i~------~~~~~~Ll~~DQL 295 (381)
+||||||++.. + +.+.+. ++ ...|.+|++.||+
T Consensus 134 fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl 180 (356)
T PTZ00312 134 FGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQT 180 (356)
T ss_pred eccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhh
Confidence 99999999843 2 222211 11 2358899999998
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.53 E-value=5.7e-15 Score=141.20 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=50.9
Q ss_pred CCCcceEEEEEEEeCeEEEEEeeccCCCCCC---------CChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEe
Q 046944 193 LGNKGSVSVRFQLYETSFCFVCSHLASGGKE---------GDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILL 263 (381)
Q Consensus 193 ~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~---------~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~ 263 (381)
++.||..-.++.|+|..|.|||.||-....+ -....|.+.+.-+++.+.=. -+..+.+|++
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~----------~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE----------GLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh----------ccCceEEEEe
Confidence 6789999999999999999999999655432 02234666666666654311 1234679999
Q ss_pred CccccccCC
Q 046944 264 GDLNYRISL 272 (381)
Q Consensus 264 GDlNyRi~~ 272 (381)
||||||++.
T Consensus 224 GdfNfrLds 232 (391)
T KOG1976|consen 224 GDFNFRLDS 232 (391)
T ss_pred cccccccch
Confidence 999999984
No 8
>PRK05421 hypothetical protein; Provisional
Probab=99.48 E-value=9.2e-13 Score=126.65 Aligned_cols=149 Identities=15% Similarity=0.084 Sum_probs=87.0
Q ss_pred EEEEEEEecCCCCccccceeeeeecccccCCC-CcceEEEEEEE-eCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhC
Q 046944 163 IFISVWIRSDLRPYIRHPSVSCVGCGIMGCLG-NKGSVSVRFQL-YETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRT 240 (381)
Q Consensus 163 i~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~G-NKG~V~i~~~l-~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~ 240 (381)
-++++++|.++.. +..+... .. ..+ -||++.+.+.+ .+..+.++|+||.+... ....|.+++..|.+.+
T Consensus 108 ~GvaiLSR~pi~~-~~~~~~~----~~--~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~--~~~~r~~q~~~l~~~~ 178 (263)
T PRK05421 108 SGVMTLSKAHPVY-CCPLRER----EP--WLRLPKSALITEYPLPNGRTLLVVNIHAINFSL--GVDVYSKQLEPIGDQI 178 (263)
T ss_pred cceeEeeecccce-eeccCCC----Cc--cccCcceeEEEEEEeCCCCEEEEEEECccccCc--ChHHHHHHHHHHHHHH
Confidence 4667788887643 1122111 10 011 38999999998 66789999999986532 2355778888777653
Q ss_pred CCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhhcHHHHhcccccccCC-CCCCC---cccCeeeeecCc
Q 046944 241 SFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERSEWNVLLENDQAKNGK-KLRSP---AWCDRIIWCGRG 316 (381)
Q Consensus 241 ~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~~~~~Ll~~DQLdt~~-k~R~P---SWcDRIL~~~~~ 316 (381)
. . . ...+|++||||-.-....+....+.+...+. | . ++. ..+.+ .-.|+||.+ +
T Consensus 179 ~--~---~--------~~p~Il~GDFN~~~~~~~~~l~~~~~~~~l~-----~-~-~~~~~~~~~~~~~~ID~I~~~--~ 236 (263)
T PRK05421 179 A--H---H--------SGPVILAGDFNTWSRKRMNALKRFARELGLK-----E-V-RFTDDQRRRAFGRPLDFVFYR--G 236 (263)
T ss_pred H--h---C--------CCCEEEEcccccCcccchHHHHHHHHHcCCC-----c-c-CcCCcccccccCCCcceEEEC--C
Confidence 2 0 0 1249999999952211112222222211111 1 0 111 11111 237999974 5
Q ss_pred ceeeeeccCCCCcCCCcCeeeeEEEE
Q 046944 317 LKQHLYARGESKLSDHRPVKAIFSVE 342 (381)
Q Consensus 317 ~~~~~Y~~~~~~~SDHrPV~a~f~v~ 342 (381)
+....+...+...|||+||.|.|.+.
T Consensus 237 ~~v~~~~v~~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 237 LNVSKASVLVTRASDHNPLLVEFSLK 262 (263)
T ss_pred cEEEEEEcCCCCCCCccCEEEEEEec
Confidence 77777776677899999999998763
No 9
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.34 E-value=3.1e-11 Score=117.54 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=95.7
Q ss_pred eeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEeCeEEEEEeeccCCCCC----CCChhHHHHHHH
Q 046944 159 QMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGK----EGDEKYRNSDVA 234 (381)
Q Consensus 159 ~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~----~~~~~~Rn~d~~ 234 (381)
...+-.++|+.|.++...... ... .++| .....+||.+.+++.+.+..+.|+|+||.+... .+....|.+++.
T Consensus 87 ~~~~~G~~iLSr~Pi~~~~~~-~f~-~~~~-~d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~ 163 (283)
T TIGR03395 87 ALEDGGVAIVSKWPIEEKIQY-IFN-KGCG-ADNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLN 163 (283)
T ss_pred CccCCEEEEEECCCccccEEE-Ecc-CCCC-CccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHH
Confidence 345668889999987643222 111 2333 245678999999999999999999999998531 112456899999
Q ss_pred HHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhhcHHHH-h-----ccccc------ccCCCCC
Q 046944 235 EILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERSEWNVL-L-----ENDQA------KNGKKLR 302 (381)
Q Consensus 235 ~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~~~~~L-l-----~~DQL------dt~~k~R 302 (381)
+|.+.+.-. ..| ..+.+|++||||..- ...+...++..-+..+- . ..|-. ..+ .+-
T Consensus 164 ~i~~~i~~~-----~~~----~~~pvIl~GDfN~~~--~s~~~~~ml~~l~~~~p~~~g~~~T~d~~~N~~a~~~~-~~~ 231 (283)
T TIGR03395 164 EIQDFIDSK-----NIP----KDETVLIGGDLNVNK--GSNEYHDMFKTLNVSEPRYVGVPATWDATTNSIAKYYY-PKE 231 (283)
T ss_pred HHHHHHhhc-----cCC----CCceEEEEeeCCCCC--CCHHHHHHHHHhcccCCCcCCCCCCcCCCcCchhhhhc-CCC
Confidence 997754211 111 234599999999632 22222333211000000 0 00110 011 133
Q ss_pred CCcccCeeeeecCccee----------eee----cc-CCCCcCCCcCeeee
Q 046944 303 SPAWCDRIIWCGRGLKQ----------HLY----AR-GESKLSDHRPVKAI 338 (381)
Q Consensus 303 ~PSWcDRIL~~~~~~~~----------~~Y----~~-~~~~~SDHrPV~a~ 338 (381)
.|.+.||||+++...++ ... .. .-..+|||+||.|.
T Consensus 232 ~~~~lDyvl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 232 EPEYLDYIFVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred CcceEEEEEEECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 46789999998643221 111 11 23578999999875
No 10
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=111.56 Aligned_cols=235 Identities=19% Similarity=0.177 Sum_probs=125.4
Q ss_pred CccceEEEEEEeeCCCCCCCCC--Ccc---ccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHh
Q 046944 50 ETQNYKVFASTWNVGGVAPTED--IDM---EDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALN 124 (381)
Q Consensus 50 ~~~~l~V~V~TWNv~g~~p~~~--~dL---~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~ 124 (381)
+.+..++.|.|||+....+..+ .++ .+-+. +..+||+ |+||+..-. ... ......|...+.+.+.
T Consensus 4 ~~~~~~~~v~TyNih~~~~~~d~r~~~~r~~~~i~--~~~~Div--~LQEv~~~~--~~~----r~~~~~~~~~~~~~~~ 73 (259)
T COG3568 4 NTQQARFKVLTYNIHKGFGAFDRRFDLPRIAEVIR--EVGADIV--ALQEVDGAF--GRH----RDGLLDLPHLLGRLGL 73 (259)
T ss_pred chhcceeEEEEEEEEEccCccCceecHHHHHHHHH--hhccCee--eeecccccc--ccc----ccccchhHHHHHHhcC
Confidence 3455568999999997776532 121 11221 2458988 999985311 110 0112345555555443
Q ss_pred ccCCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEE
Q 046944 125 KKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQ 204 (381)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~ 204 (381)
.... .. +..|..+....-.|-+++ .|.... .|.+...+.. +|+. -.|++.+.+.
T Consensus 74 ~~~~--------~~----------~~~~~a~~~~~~~GnaiL--S~~pi~-~v~~~~lp~~-~~~~----~Rgal~a~~~ 127 (259)
T COG3568 74 APYW--------WS----------GAAFGAVYGEGQHGNAIL--SRLPIR-DVENLALPDP-TGLE----PRGALLAEIE 127 (259)
T ss_pred Cccc--------cc----------hhhhhhhcccceeeeEEE--ecCccc-chhhccCCCC-CCCC----CceeEEEEEE
Confidence 2110 00 001111222222333332 244332 3334333321 3443 3899999999
Q ss_pred Ee-CeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhh
Q 046944 205 LY-ETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVER 283 (381)
Q Consensus 205 l~-~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~ 283 (381)
.. +..+.++|+||+-.+ +.|.+++..|++.+.++. ...+++||||| +.|.+.-..+...
T Consensus 128 ~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~~------------~~p~vl~GDFN---~~p~s~~yr~~~~ 187 (259)
T COG3568 128 LPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLPA------------LNPTVLMGDFN---NEPGSAEYRLAAR 187 (259)
T ss_pred cCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCcc------------cCceEEEccCC---CCCCCccceeccC
Confidence 95 789999999999543 568999999987433322 12599999999 3443332222221
Q ss_pred hcHHHHhccccc---------ccCCCCCCCcccCeeeeecCcceeeeeccC----CCCcCCCcCeeeeEEE
Q 046944 284 SEWNVLLENDQA---------KNGKKLRSPAWCDRIIWCGRGLKQHLYARG----ESKLSDHRPVKAIFSV 341 (381)
Q Consensus 284 ~~~~~Ll~~DQL---------dt~~k~R~PSWcDRIL~~~~~~~~~~Y~~~----~~~~SDHrPV~a~f~v 341 (381)
.....+...... ++....+.+.-+||||- ++.+....+... --..|||.||.|...+
T Consensus 188 ~~~~~~~~~~~~~~~a~~~~~~tfps~~p~lriD~Ifv-s~~~~i~~~~v~~~~~a~~aSDHlPl~aeL~~ 257 (259)
T COG3568 188 SPLNAQAALTGAFAPAVGRTIRTFPSNTPLLRLDRIFV-SKELAIRSVHVLTDRLARVASDHLPLLAELRL 257 (259)
T ss_pred CchhhccccccccCcccCcccCCCCCCCccccccEEEe-cCcccEEEEEeecCCCccccccccceEEEEec
Confidence 111111111111 23444444555899997 444555445432 2458999999988664
No 11
>PRK11756 exonuclease III; Provisional
Probab=99.26 E-value=2.4e-11 Score=116.50 Aligned_cols=151 Identities=12% Similarity=0.160 Sum_probs=79.2
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCCCcchhhh
Q 046944 56 VFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTPYQDNKLR 135 (381)
Q Consensus 56 V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~~~~~~~~ 135 (381)
+.|+||||+|..-.- ..+.+||. ...|||+ ||||+- ..... ...| .+ +.+
T Consensus 1 mri~T~Nv~g~~~~~-~~i~~~i~--~~~pDIi--~LQE~~-~~~~~---------~~~~--~~-~~~------------ 50 (268)
T PRK11756 1 MKFVSFNINGLRARP-HQLEAIIE--KHQPDVI--GLQETK-VHDEM---------FPLE--EV-EAL------------ 50 (268)
T ss_pred CEEEEEEcCCHHHHH-HHHHHHHH--hcCCCEE--EEEecc-ccccc---------CCHH--HH-Hhc------------
Confidence 358999999854221 12677886 3679988 899983 11100 0111 11 111
Q ss_pred hcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEeCeEEEEEee
Q 046944 136 KLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCS 215 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~~t~i~Fvn~ 215 (381)
+|....+.+-..-+++|++|.++... .. +.+..+.....+.+.+.+...+..|.++|+
T Consensus 51 ---------------gy~~~~~~~~~~~GvailSr~p~~~~----~~---~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~ 108 (268)
T PRK11756 51 ---------------GYHVFYHGQKGHYGVALLSKQTPIAV----RK---GFPTDDEEAQRRIIMATIPTPNGNLTVING 108 (268)
T ss_pred ---------------CCEEEEeCCCCCCEEEEEECCChHHe----EE---CCCCccccccCCEEEEEEEcCCCCEEEEEE
Confidence 24333222333345677889875421 11 111001112457888888876556999999
Q ss_pred ccCCCCCCC---ChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCcccc
Q 046944 216 HLASGGKEG---DEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNY 268 (381)
Q Consensus 216 HL~a~~~~~---~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNy 268 (381)
|++.+.... ....|.+.+..+...+.-. ......+|++||||.
T Consensus 109 y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~----------~~~~~pvIl~GDfN~ 154 (268)
T PRK11756 109 YFPQGESRDHPTKFPAKRQFYQDLQNYLETE----------LSPDNPLLIMGDMNI 154 (268)
T ss_pred EecCCCCCCcchhHHHHHHHHHHHHHHHHHH----------hccCCCEEEEeeccc
Confidence 998765311 1123444444444332100 001235999999995
No 12
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.18 E-value=1.4e-10 Score=110.07 Aligned_cols=124 Identities=21% Similarity=0.242 Sum_probs=76.4
Q ss_pred eEEEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCC----
Q 046944 198 SVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLP---- 273 (381)
Q Consensus 198 ~V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~---- 273 (381)
...+...+.|..+||.++||.+... ...+|.+++...+++++=.- .+++.-.||+.||+|.|-..-
T Consensus 194 L~I~Ev~v~G~Kl~l~tsHLEStr~--h~P~r~~qF~~~~~k~~EaI--------e~lPnA~ViFGGD~NlrD~ev~r~~ 263 (349)
T KOG2756|consen 194 LLIVEVNVSGNKLCLMTSHLESTRG--HAPERMNQFKMVLKKMQEAI--------ESLPNATVIFGGDTNLRDREVTRCG 263 (349)
T ss_pred eEEEEEeecCceEEEEeccccCCCC--CChHHHHHHHHHHHHHHHHH--------HhCCCceEEEcCcccchhhhcccCC
Confidence 4566778889999999999999875 45678888876665532000 011233599999999876421
Q ss_pred -hHHHHHHHhhhcHHHHhccccc----ccC----------CCCCCCcccCeeeeecCc----c--eeeee------ccCC
Q 046944 274 -EATTRLLVERSEWNVLLENDQA----KNG----------KKLRSPAWCDRIIWCGRG----L--KQHLY------ARGE 326 (381)
Q Consensus 274 -~~~v~~li~~~~~~~Ll~~DQL----dt~----------~k~R~PSWcDRIL~~~~~----~--~~~~Y------~~~~ 326 (381)
++.+. .-|+.|-..-.+ ||. -+.| .|||+|+... + ..+.| +.+.
T Consensus 264 lPD~~v-----DvWE~lg~p~~~~FTwDT~~N~nl~G~~a~k~R----fDRi~~r~~~~~G~~~~~~l~l~g~~kiRgc~ 334 (349)
T KOG2756|consen 264 LPDNIV-----DVWEFLGKPKHCQFTWDTQMNSNLGGTAACKLR----FDRIFFRAAAEEGHIIPRSLDLLGLEKLRGCG 334 (349)
T ss_pred CCchHH-----HHHHHhCCCCcCceeeecccCcccchhHHHHHH----HHHHhhhhhhhcCCcCccccchhhhhhhccCC
Confidence 11111 125544432222 232 2456 8999997431 1 12333 2256
Q ss_pred CCcCCCcCeeeeEE
Q 046944 327 SKLSDHRPVKAIFS 340 (381)
Q Consensus 327 ~~~SDHrPV~a~f~ 340 (381)
...|||.-+.++|.
T Consensus 335 ~fPSDHwgll~Tl~ 348 (349)
T KOG2756|consen 335 RFPSDHWGLLCTLD 348 (349)
T ss_pred CCCcccceeeeecc
Confidence 78899999988874
No 13
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.15 E-value=6.4e-11 Score=107.66 Aligned_cols=137 Identities=22% Similarity=0.215 Sum_probs=67.2
Q ss_pred ecEEEEEEEecCCCCccccceeeeeecccc---cCCCCcceEEEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHH
Q 046944 161 VGIFISVWIRSDLRPYIRHPSVSCVGCGIM---GCLGNKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEIL 237 (381)
Q Consensus 161 vGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~---g~~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~ 237 (381)
.+..++|++|.++...+..........+.. ....+++.+.+++. +..|+++++|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 467899999998764443333222222221 12334555555554 9999999999998532 2332233333
Q ss_pred hhCC-CCCCCCCCCCccccccccEEEeCccccccCCCh----HHHHHHHhh----hcHHHHhccccc-------ccCCCC
Q 046944 238 SRTS-FPRGPLLNLPRNILDHDRVILLGDLNYRISLPE----ATTRLLVER----SEWNVLLENDQA-------KNGKKL 301 (381)
Q Consensus 238 ~~~~-f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~----~~v~~li~~----~~~~~Ll~~DQL-------dt~~k~ 301 (381)
+.+. +.. .. ....+|++||||.+..... +........ ..+..+.....+ .++...
T Consensus 145 ~~~~~~~~----~~-----~~~~~iv~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
T PF03372_consen 145 ARIQKIYA----DN-----PNEPVIVMGDFNSRPDSRDSGFRESIRDFLPEYGFKDGFRDLHPNCVLPTSPGTTPTYSKN 215 (249)
T ss_dssp HHHHHHHH----TS-----SCCEEEEEEE-SS-BSSGGTHHHHHHHHSHHHHHHHTHHHHHHTTHEEECCSTSBETTTTC
T ss_pred hhhhhccc----cc-----ccceEEEEeecccCCccchhhhhhccccccccchhhhhhhhccccccccCCCCCccCCCCC
Confidence 3221 000 00 0014999999998775321 001111111 112222222222 345666
Q ss_pred CCCcccCeeeee
Q 046944 302 RSPAWCDRIIWC 313 (381)
Q Consensus 302 R~PSWcDRIL~~ 313 (381)
+.|+++|+||..
T Consensus 216 ~~~~~iD~i~~s 227 (249)
T PF03372_consen 216 GEPSRIDYIFVS 227 (249)
T ss_dssp TEEB--EEEEEE
T ss_pred CCCccEEEEEEE
Confidence 788899999993
No 14
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=1e-09 Score=103.49 Aligned_cols=36 Identities=28% Similarity=0.523 Sum_probs=26.1
Q ss_pred EEEEEeeCCCCCCCCCCcc-ccccCCCCCCCcEEEEEEEeee
Q 046944 56 VFASTWNVGGVAPTEDIDM-EDWLHTPNTLCDIYVLGFQEIV 96 (381)
Q Consensus 56 V~V~TWNv~g~~p~~~~dL-~~wl~~~~~~~DIyViG~QEiv 96 (381)
+.|+||||+|...... .+ .+||. ...|||+ +|||.-
T Consensus 1 lri~t~Nv~g~~~~~~-~~~~~~l~--~~~~DIv--~LQE~~ 37 (255)
T TIGR00633 1 MKIISWNVNGLRARLH-KLFLDWLK--EEQPDVL--CLQETK 37 (255)
T ss_pred CEEEEEecccHHHHhh-ccHHHHHH--hcCCCEE--EEEecc
Confidence 3689999999654322 24 67776 3689988 999983
No 15
>PTZ00297 pantothenate kinase; Provisional
Probab=99.06 E-value=7.8e-09 Score=119.27 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=56.6
Q ss_pred cEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEe----C-eEEEEEeeccCCCCCCCChhHHHHHHHHH
Q 046944 162 GIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLY----E-TSFCFVCSHLASGGKEGDEKYRNSDVAEI 236 (381)
Q Consensus 162 Gi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~----~-t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I 236 (381)
.-.++|..|.++.. ..+...+.-+.+ ....+||.+.+.+.+. + ..+.|+|+||.+.... ..|.+++.++
T Consensus 102 ~~G~AILSR~PI~~-~~~~~l~~~~~~--~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql 175 (1452)
T PTZ00297 102 DNGLIIASRFPIWQ-RGSYTFRNHERG--EQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL---PSTSSQVQET 175 (1452)
T ss_pred CCEEEEEECCChhh-ceeeecCccccc--ccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc---chHHHHHHHH
Confidence 44778899999863 333333322121 2245899999999985 2 5799999999987542 2244555544
Q ss_pred HhhCC-----CCCCCCCCCCccccccccEEEeCcccc
Q 046944 237 LSRTS-----FPRGPLLNLPRNILDHDRVILLGDLNY 268 (381)
Q Consensus 237 ~~~~~-----f~~~~~~~~p~~i~~~d~vf~~GDlNy 268 (381)
.+-+. |... ..+.....+|++||||-
T Consensus 176 ~~~i~~~i~~~~~~------~~~~~~~PvILaGDFN~ 206 (1452)
T PTZ00297 176 RRFVESVIANVYEQ------NNDGAEIPFVIAGDFNI 206 (1452)
T ss_pred HHHHHHhhhhhccc------ccCCCCCCEEEEeeCCC
Confidence 43211 1100 01112346999999994
No 16
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.02 E-value=8.3e-09 Score=98.86 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=27.7
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEee
Q 046944 56 VFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEI 95 (381)
Q Consensus 56 V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEi 95 (381)
+-|+||||+|-.-.....+.+||. ...|||+ ||||.
T Consensus 1 mki~swNVNgir~~~~~~~~~~l~--~~~~DIi--clQEt 36 (250)
T PRK13911 1 MKLISWNVNGLRACMTKGFMDFFN--SVDADVF--CIQES 36 (250)
T ss_pred CEEEEEEeCChhHhhhhhHHHHHH--hcCCCEE--EEEee
Confidence 358999999976443224788997 3789988 99998
No 17
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=98.96 E-value=3.1e-08 Score=105.11 Aligned_cols=62 Identities=16% Similarity=0.361 Sum_probs=42.1
Q ss_pred eEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCC-CCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhh
Q 046944 208 TSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTS-FPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERS 284 (381)
Q Consensus 208 t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~-f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~ 284 (381)
..|+++|+||-.+... ...|..+...|++.+. +... ... .+|++|||| ..|.+.+.+++..+
T Consensus 417 ~~l~VaNTHL~~~p~~--~dvRl~Q~~~Ll~~l~~~~~~--~~~--------PvIlcGDFN---S~P~S~vy~lLt~G 479 (606)
T PLN03144 417 QLLCVANTHIHANQEL--KDVKLWQVHTLLKGLEKIAAS--ADI--------PMLVCGDFN---SVPGSAPHCLLATG 479 (606)
T ss_pred cEEEEEEeeeccCCcc--chhHHHHHHHHHHHHHHHhhc--CCC--------ceEEeccCC---CCCCChhhhhhhcC
Confidence 3699999999766542 2347777777776543 2111 112 499999999 58888888887654
No 18
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=98.92 E-value=2.5e-08 Score=96.82 Aligned_cols=222 Identities=17% Similarity=0.160 Sum_probs=111.2
Q ss_pred EEEEEEeeCCCCCCCCCCc------cccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCC
Q 046944 55 KVFASTWNVGGVAPTEDID------MEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTP 128 (381)
Q Consensus 55 ~V~V~TWNv~g~~p~~~~d------L~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~ 128 (381)
.+.|+|||+-.......-. +.+.| ..|||+ |+||+.+-.. .-...+.+.||+..
T Consensus 17 ~l~I~SfNIr~fgd~k~~~~~r~~~i~~il----~~~DIi--glQEV~d~q~-------------~~l~~ll~~Ln~~~- 76 (276)
T smart00476 17 SLRICAFNIQSFGDSKMSNATLMSIIVKIL----SRYDIA--LVQEVRDSDL-------------SAVPKLMDQLNSDS- 76 (276)
T ss_pred cEEEEEEECcccCCccccHHHHHHHHHHHh----ccCCEE--EEEEeecchh-------------HHHHHHHHHHhhcC-
Confidence 5889999998544322100 22222 268988 9999975211 11234445677432
Q ss_pred CcchhhhhcccCCCCCCCCCCCCeEEEEEeeee----cEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEE
Q 046944 129 YQDNKLRKLQSISPDNDVQISPGFRCIICKQMV----GIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQ 204 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mv----Gi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~ 204 (381)
+..|..+.+...+ |-..+++.|++....+..-..+...-|... .=..=-..++|+
T Consensus 77 --------------------~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~-~F~ReP~~~~F~ 135 (276)
T smart00476 77 --------------------PNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGND-VFSREPFVVKFS 135 (276)
T ss_pred --------------------CCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCccc-cccccceEEEEE
Confidence 2367777766543 367778888775443333222110001000 112335566777
Q ss_pred EeCe---EEEEEeeccCCCCCCCChhHHHHHHHH-HHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHH
Q 046944 205 LYET---SFCFVCSHLASGGKEGDEKYRNSDVAE-ILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLL 280 (381)
Q Consensus 205 l~~t---~i~Fvn~HL~a~~~~~~~~~Rn~d~~~-I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~l 280 (381)
...+ .|.++++|+.+.. ..++...+.. ++.... . . ..+-||++||||.--+-..+..-+-
T Consensus 136 ~~~~~~~~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~--~---------~-~~~~villGDFNa~~~y~~~~~~~~ 199 (276)
T smart00476 136 SPSTAVKEFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ--K---------W-GTEDVIFMGDFNAGCSYVTKKQWSS 199 (276)
T ss_pred eCCCCCccEEEEEecCChHH----HHHHHHHHHHHHHHHHH--h---------h-ccCCEEEEccCCCCCCccChhhhhh
Confidence 6654 7999999999853 2233333222 222211 0 0 1234999999995221001111111
Q ss_pred H---hhhcHHHHhcccccccCCCCCCCcccCeeeeecCcce---------eeeecc-------CCCCcCCCcCe
Q 046944 281 V---ERSEWNVLLENDQAKNGKKLRSPAWCDRIIWCGRGLK---------QHLYAR-------GESKLSDHRPV 335 (381)
Q Consensus 281 i---~~~~~~~Ll~~DQLdt~~k~R~PSWcDRIL~~~~~~~---------~~~Y~~-------~~~~~SDHrPV 335 (381)
| ....|.-|. .|.-+|...+ +-.==|||++.+..++ ...|.. .....|||.||
T Consensus 200 i~l~~~~~f~wli-~d~~dtT~~~-~~~~YDriv~~~~~~~~~~~~~sa~v~~f~~~~~l~~~~~~~vSDH~pv 271 (276)
T smart00476 200 IRLRTSPTFHWLI-PDSADTTVTS-THCAYDRIVVAGERLRSSVVPGSAAVFDFQTAYGLTEEEALAISDHFPV 271 (276)
T ss_pred hcccccCCeeEee-cCCccccccC-CCCCcccEEEechhhhccccccccceeehHHhhCccHHHHHhccCcccE
Confidence 1 122233223 4444554332 2222399998765322 223321 12568999999
No 19
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=98.90 E-value=1.8e-08 Score=95.83 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=25.5
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEee
Q 046944 56 VFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEI 95 (381)
Q Consensus 56 V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEi 95 (381)
+.|+||||+|...... .+.+||.. ..|||+ +|||.
T Consensus 1 mri~t~Ni~g~~~~~~-~~~~~l~~--~~~DIi--~LQE~ 35 (254)
T TIGR00195 1 MKIISWNVNGLRARLH-KGLAWLKE--NQPDVL--CLQET 35 (254)
T ss_pred CEEEEEEcCcHHHhHH-HHHHHHHh--cCCCEE--EEEec
Confidence 3689999998653321 25677763 678988 89997
No 20
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=98.81 E-value=6.6e-08 Score=93.22 Aligned_cols=218 Identities=17% Similarity=0.178 Sum_probs=110.7
Q ss_pred EEEEEEeeCCCCCCCCC----CccccccCCCCCCCcEEEEEEEeeecCcccccccCCCc-h-------hhHHHHHHHHHH
Q 046944 55 KVFASTWNVGGVAPTED----IDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENN-K-------IFTKWNSLIREA 122 (381)
Q Consensus 55 ~V~V~TWNv~g~~p~~~----~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~-~-------~~~~W~~~i~~~ 122 (381)
...|+|||+.|..-... .++..++. .+.++||+ .|||+..+.+.+......- . .+..|.
T Consensus 24 ~~~~~twn~qg~s~~~~~kw~~~v~~l~~-~~~~~DIl--a~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~------ 94 (271)
T PRK15251 24 DYKVATWNLQGSSASTESKWNVNVRQLLS-GENPADIL--MVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWN------ 94 (271)
T ss_pred cceEEEeecCCCCCCChhhhhhhHHHHhc-CCCCCCEE--EEEecCCCccccccccccccccccccCcccEEEE------
Confidence 34689999999854332 12444453 23679988 9999987776643211000 0 000110
Q ss_pred HhccCCCcchhhhhcccCCCCCCCCCC-CCeEEEEEeee--ecEEEEEEEecCCCCccccceeeeeecccccCCCCcceE
Q 046944 123 LNKKTPYQDNKLRKLQSISPDNDVQIS-PGFRCIICKQM--VGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSV 199 (381)
Q Consensus 123 L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~v~s~~m--vGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V 199 (381)
|+.. ..| ..|+.-..... .-..++|..|.+.. ++.+-...+ ...+..+
T Consensus 95 l~~~--------------------srpgm~YiY~~aiD~~ggr~glAIlSr~~a~----~~~~l~~p~-----~~~Rpil 145 (271)
T PRK15251 95 LGTR--------------------SRPNQVYIYYSRVDVGANRVNLAIVSRRRAD----EVIVLRPPT-----VASRPII 145 (271)
T ss_pred ccCc--------------------cCCCceEEEEecccCCCCceeEEEEeccccc----ceEEecCCC-----CcccceE
Confidence 1100 001 12322211121 22678888888743 222211221 2357778
Q ss_pred EEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHH
Q 046944 200 SVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRL 279 (381)
Q Consensus 200 ~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~ 279 (381)
++++ .+ +.|+++|+.+... ..|.+.+..|..-+. +. .| +...+++|||| ..|.+....
T Consensus 146 gi~i--~~--~~ffstH~~a~~~----~da~aiV~~I~~~f~-~~-----~~-----~~pw~I~GDFN---r~P~sl~~~ 203 (271)
T PRK15251 146 GIRI--GN--DVFFSIHALANGG----TDAGAIVRAVHNFFR-PN-----MR-----HINWMIAGDFN---RSPDRLEST 203 (271)
T ss_pred EEEe--cC--eEEEEeeecCCCC----ccHHHHHHHHHHHHh-hc-----cC-----CCCEEEeccCC---CCCcchhhh
Confidence 8876 33 6899999999843 237777777776431 01 11 23499999999 344443333
Q ss_pred HHhhhcHHHHhccccc-c-cCCCCCCCcc-cCeeeeecCc-ce-------eeeeccC-CCCcCCCcCeee
Q 046944 280 LVERSEWNVLLENDQA-K-NGKKLRSPAW-CDRIIWCGRG-LK-------QHLYARG-ESKLSDHRPVKA 337 (381)
Q Consensus 280 li~~~~~~~Ll~~DQL-d-t~~k~R~PSW-cDRIL~~~~~-~~-------~~~Y~~~-~~~~SDHrPV~a 337 (381)
+.. ..|. ..+.. . +....+ |.- .|+|++++.. .. .+.+... +-..|||+||.-
T Consensus 204 l~~-~~~~---~~~~iv~p~~pT~~-s~~~IDYiv~~~s~~~~~~~~i~a~l~~~~~~~~~aSDH~PV~f 268 (271)
T PRK15251 204 LDT-EHLR---NRVNIVAPTEPTQR-SGGTLDYAVTGNSNQTFGPPLLAASLMLASLRSQLASDHFPVNF 268 (271)
T ss_pred hcc-hhcc---cccEEeCCCCCCCC-CCCeeEEEEecCccccccccchheeeeecccccccccCcccccc
Confidence 322 2122 11111 1 111222 332 6999886432 22 2333332 446899999953
No 21
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=98.65 E-value=4.5e-08 Score=93.90 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=62.2
Q ss_pred EEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCCCcchhhhh
Q 046944 57 FASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTPYQDNKLRK 136 (381)
Q Consensus 57 ~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~~~~~~~~~ 136 (381)
-+.||||||..-.-.. +.+||.. ..|||+ |+||+- .....+ . ++.+..
T Consensus 2 kI~SwNVNgiRar~~~-~~~~l~~--~~pDVl--clQEtK-~~~~~f-p--------------~~~~~~----------- 49 (261)
T COG0708 2 KIASWNVNGLRARLKK-LLDWLEE--EQPDVL--CLQETK-AQDEQF-P--------------REELEA----------- 49 (261)
T ss_pred eeEEEehhhHHHHHHH-HHHHHHH--hCCCEE--EEEecc-cCcccC-C--------------HhHHhh-----------
Confidence 5899999997643222 7789874 567987 999983 211110 0 111211
Q ss_pred cccCCCCCCCCCCCCe-EEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCC-CCcceEEEEEEEeCeEEEEEe
Q 046944 137 LQSISPDNDVQISPGF-RCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCL-GNKGSVSVRFQLYETSFCFVC 214 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~Y-~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~-GNKG~V~i~~~l~~t~i~Fvn 214 (381)
.+| ....+.|-+=-++++++|..+. .+..|+.|.- --.-+=.|...+.+ |.++|
T Consensus 50 -------------~GY~~~~~~gqKgysGVailsr~~~~---------~v~~g~~~~~~~d~e~R~I~a~~~~--~~v~~ 105 (261)
T COG0708 50 -------------LGYHHVFNHGQKGYSGVAILSKKPPD---------DVRRGFPGEEEDDEEGRVIEAEFDG--FRVIN 105 (261)
T ss_pred -------------CCceEEEecCcCCcceEEEEEccCch---------hhhcCCCCCccccccCcEEEEEECC--EEEEE
Confidence 246 4444445333467778887653 3455654421 01112234444545 88999
Q ss_pred eccCCCCC
Q 046944 215 SHLASGGK 222 (381)
Q Consensus 215 ~HL~a~~~ 222 (381)
.-++.|+.
T Consensus 106 ~Y~PnG~~ 113 (261)
T COG0708 106 LYFPNGSS 113 (261)
T ss_pred EEcCCCCC
Confidence 99999985
No 22
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=98.62 E-value=1.4e-07 Score=93.15 Aligned_cols=243 Identities=19% Similarity=0.147 Sum_probs=138.6
Q ss_pred CccceEEEEEEeeCCCCCCCCC------CccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHH
Q 046944 50 ETQNYKVFASTWNVGGVAPTED------IDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREAL 123 (381)
Q Consensus 50 ~~~~l~V~V~TWNv~g~~p~~~------~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L 123 (381)
+...+++.|.|.|+=|..--+. .++.+.+. ++.+||| +|||+= ....|+ .+++..
T Consensus 3 n~~a~~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~--~E~yDiv--~LQEvW--------------s~eD~~-~L~~~~ 63 (422)
T KOG3873|consen 3 NMLALELRILTLNIWGIPYVSKDRRHRMDAIGDELA--SEKYDIV--SLQEVW--------------SQEDFE-YLQSGC 63 (422)
T ss_pred cchhheeeeeEeeccccccccchhHHHHHHHhHHHh--hcccchh--hHHHHH--------------HHHHHH-HHHHhc
Confidence 3456788899999887542221 12334443 4789998 999982 123443 233333
Q ss_pred hccCCCcchhhhhcccCCCCCCCCCCCCeEE-EEEeeeecEEEEEEEecCCCCccccce-----eeeeecccccCCCCcc
Q 046944 124 NKKTPYQDNKLRKLQSISPDNDVQISPGFRC-IICKQMVGIFISVWIRSDLRPYIRHPS-----VSCVGCGIMGCLGNKG 197 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-v~s~~mvGi~L~Vfvr~~l~~~I~~v~-----~s~v~~G~~g~~GNKG 197 (381)
+... .|.. ..|..| |-.|+||.|.++..-..+.- ...+-. +...|-||
T Consensus 64 ss~y-----------------------Pysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~r--GDWf~GK~ 117 (422)
T KOG3873|consen 64 SSVY-----------------------PYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHR--GDWFGGKG 117 (422)
T ss_pred cccC-----------------------chHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeee--ccccccce
Confidence 3211 2322 566666 99999999999864322210 011111 24577799
Q ss_pred eEEEEEEEeCeEEEEEeeccCCC---CCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccC-CC
Q 046944 198 SVSVRFQLYETSFCFVCSHLASG---GKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRIS-LP 273 (381)
Q Consensus 198 ~V~i~~~l~~t~i~Fvn~HL~a~---~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~-~~ 273 (381)
.-...+.+.+..+.++|+||-|- +++.....|..|.-++.+-++-- -...|.||++||||-+=. ++
T Consensus 118 Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t----------~q~~~vVI~~GDLN~~P~dl~ 187 (422)
T KOG3873|consen 118 VGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRAT----------RQNADVVILAGDLNMQPQDLG 187 (422)
T ss_pred eEEEEEeeCCEEeeeeehhccccccccCchhhhHHHHHHHHHHHHHHHH----------hcCCcEEEEecCCCCCccccc
Confidence 88888999999999999999885 22334556777766655432211 123478999999996542 33
Q ss_pred hHHHH--HHH-----------hh-----hcHHHHhcc---ccc-c--cCCCCCCCc----ccCeeeeecCcc--eeeeec
Q 046944 274 EATTR--LLV-----------ER-----SEWNVLLEN---DQA-K--NGKKLRSPA----WCDRIIWCGRGL--KQHLYA 323 (381)
Q Consensus 274 ~~~v~--~li-----------~~-----~~~~~Ll~~---DQL-d--t~~k~R~PS----WcDRIL~~~~~~--~~~~Y~ 323 (381)
..-+. .++ +. ..+++|++. |-. . ++..++.|- ..|++|+++... +...|.
T Consensus 188 ~~ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~ 267 (422)
T KOG3873|consen 188 HKLLLSAGLVDAWTSLHLDQCESDSFRLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCNAKIAEVE 267 (422)
T ss_pred eeeeeccchhhhHhhhchhhhcCcccccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcceEEEeeeEE
Confidence 22111 111 00 012233333 111 1 111222222 379999987543 223332
Q ss_pred ----c-C--CCCcCCCcCeeeeEEEEEEecc
Q 046944 324 ----R-G--ESKLSDHRPVKAIFSVEVRVLR 347 (381)
Q Consensus 324 ----~-~--~~~~SDHrPV~a~f~v~v~~~~ 347 (381)
+ + +..+|||..+.|++.+.-..+.
T Consensus 268 ~t~~rvP~~d~s~SDH~Al~a~L~I~~~~~~ 298 (422)
T KOG3873|consen 268 FTEPRVPGEDCSYSDHEALMATLKIFKQPPR 298 (422)
T ss_pred ecCCCCCCCCCCccchhhheeEEEeecCCCC
Confidence 2 2 4789999999999998765554
No 23
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.00017 Score=70.79 Aligned_cols=127 Identities=21% Similarity=0.198 Sum_probs=71.1
Q ss_pred CcceEEEEEEE-eCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCC
Q 046944 195 NKGSVSVRFQL-YETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLP 273 (381)
Q Consensus 195 NKG~V~i~~~l-~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~ 273 (381)
-||++.+.... +++.+..++.|..-.... ....| ++..++.+.+.= ... .+|+.|||| +.|
T Consensus 174 pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~-~~~~~-~ql~~l~~~i~~-----~~g--------pvIlaGDfN---a~p 235 (309)
T COG3021 174 PKSALATAYPLPDGTELTVVALHAVNFPVG-TDPQR-AQLLELGDQIAG-----HSG--------PVILAGDFN---APP 235 (309)
T ss_pred CccceeEEEEcCCCCEEEEEeeccccccCC-ccHHH-HHHHHHHHHHHc-----CCC--------CeEEeecCC---Ccc
Confidence 57776666554 578999999998844332 33445 666666655321 111 399999999 444
Q ss_pred hHHH-HHHHhh--hcHHHHhcccccccC--CCCCCCcc-cCeeeeecCcceeeeeccCCCCcCCCcCeeeeEEE
Q 046944 274 EATT-RLLVER--SEWNVLLENDQAKNG--KKLRSPAW-CDRIIWCGRGLKQHLYARGESKLSDHRPVKAIFSV 341 (381)
Q Consensus 274 ~~~v-~~li~~--~~~~~Ll~~DQLdt~--~k~R~PSW-cDRIL~~~~~~~~~~Y~~~~~~~SDHrPV~a~f~v 341 (381)
-+.+ +.+..- .........-+..+. ...|.+.| .|.|+|++ +....=.+.+..-|||+||.+.|+.
T Consensus 236 WS~~~~R~~~l~~~~~~~~aG~~~~~~~p~~~~r~~g~PIDhvf~rg--l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 236 WSRTAKRMAALGGLRAAPRAGLWEVRFTPDERRRAFGLPIDHVFYRG--LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred hhHHHHHHHHhcccccchhccCCccccCHHHHhhccCCCcceeeecC--cchhhhhhccccCCCCCceEEEEEe
Confidence 3332 222110 000000000000011 12334555 89999988 4444444556689999999999975
No 24
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=97.45 E-value=0.00053 Score=70.73 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=61.1
Q ss_pred EEEEEEecCCCCcccc--ceeeeeecccccCCCCcceEEEEEEEeCe---EEEEEeeccCCCCCCCChhHHHHHHHHHHh
Q 046944 164 FISVWIRSDLRPYIRH--PSVSCVGCGIMGCLGNKGSVSVRFQLYET---SFCFVCSHLASGGKEGDEKYRNSDVAEILS 238 (381)
Q Consensus 164 ~L~Vfvr~~l~~~I~~--v~~s~v~~G~~g~~GNKG~V~i~~~l~~t---~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~ 238 (381)
.++++.+..+-..+.+ |.....+.|++..-.=++.|+..+++-+. .|++.|+||--+...++ .|..+...|++
T Consensus 203 G~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~--vrL~Q~~iiL~ 280 (495)
T KOG2338|consen 203 GVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD--VRLAQVYIILA 280 (495)
T ss_pred eEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc--hhhHHHHHHHH
Confidence 4556666664333332 33333455554322223445555544444 89999999999876544 37888888887
Q ss_pred hCC-CCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHH
Q 046944 239 RTS-FPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLV 281 (381)
Q Consensus 239 ~~~-f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li 281 (381)
.+. |... . ..|=.+|+||||| ..|.+.+...|
T Consensus 281 ~~~~~~~~---~-----~~~~pi~l~GDfN---t~p~~~~y~fl 313 (495)
T KOG2338|consen 281 ELEKMSKS---S-----KSHWPIFLCGDFN---TEPDSPPYLFL 313 (495)
T ss_pred HHHHHHhh---c-----ccCCCeEEecCCC---CCCCCCcchhh
Confidence 653 2211 0 0345799999999 45555444433
No 25
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=97.10 E-value=0.0015 Score=53.96 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=32.7
Q ss_pred cEEEeCccccccCC-ChHHHHHHHhhhcHHHHhccccc---------ccCCCCCCCcccCeeeeecCccee-eeeccCCC
Q 046944 259 RVILLGDLNYRISL-PEATTRLLVERSEWNVLLENDQA---------KNGKKLRSPAWCDRIIWCGRGLKQ-HLYARGES 327 (381)
Q Consensus 259 ~vf~~GDlNyRi~~-~~~~v~~li~~~~~~~Ll~~DQL---------dt~~k~R~PSWcDRIL~~~~~~~~-~~Y~~~~~ 327 (381)
.+|++||||..-.. ....... -....+.++++..+| .|....+..+-.|+||....-... ..-.....
T Consensus 32 ~~Ii~GDFN~~~~~w~~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~~T~~~~~~~s~iD~~~~s~~~~~~~~~~~~~~~ 110 (119)
T PF14529_consen 32 PIIIGGDFNAHHPNWDSSNTNS-RRGEQLLDWLDSHNLVDLNPPGRPPTFISNSHGSRIDLILTSDNLLSWCVWVISSDD 110 (119)
T ss_dssp SEEEEEE-----GGGT-SCHHH-HHHHHHHHHHHHCTEEE---TT---SEEECCCEE--EEEEEECCGCCCEEEEEETTS
T ss_pred CEEEEeECCCCchhhhhccccc-hhHHHHHHHhhhceeeeeecCCCCCcccCCCCCceEEEEEECChHHhcCcEEEeCCC
Confidence 59999999984331 1111110 112234444444444 122222236778999985543222 11112457
Q ss_pred CcCCCcCee
Q 046944 328 KLSDHRPVK 336 (381)
Q Consensus 328 ~~SDHrPV~ 336 (381)
..|||+||+
T Consensus 111 ~~SDH~~I~ 119 (119)
T PF14529_consen 111 SGSDHCPIT 119 (119)
T ss_dssp SSSSB--EE
T ss_pred CCCCccCCC
Confidence 889999995
No 26
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=93.76 E-value=0.42 Score=48.06 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=29.9
Q ss_pred CCCCCccc---CeeeeecC-ccee--------eeecc-----C-CCCcCCCcCeeeeEEEEEEe
Q 046944 300 KLRSPAWC---DRIIWCGR-GLKQ--------HLYAR-----G-ESKLSDHRPVKAIFSVEVRV 345 (381)
Q Consensus 300 k~R~PSWc---DRIL~~~~-~~~~--------~~Y~~-----~-~~~~SDHrPV~a~f~v~v~~ 345 (381)
..-+|+|| |+|+|.+. ..++ -.|.+ + .-..|||-|..|.|...-..
T Consensus 306 TN~t~~~kG~iDYIfy~~~~~~~~~~~l~~ve~e~~~k~~G~pn~~~pSdhipl~~ef~~~~~~ 369 (378)
T COG5239 306 TNWTPGFKGVIDYIFYHGGLLTRQTGLLGVVEGEYASKVIGLPNMPFPSDHIPLLAEFASDHKN 369 (378)
T ss_pred ccccccccceeEEEEEecCcceeeeccccccccchhhhhcccCCCCCccccccchhcccccccc
Confidence 46789997 88888765 2322 23443 1 23569999999998765433
No 27
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.00 E-value=21 Score=36.66 Aligned_cols=16 Identities=50% Similarity=0.704 Sum_probs=13.4
Q ss_pred cccccEEEeCcccccc
Q 046944 255 LDHDRVILLGDLNYRI 270 (381)
Q Consensus 255 ~~~d~vf~~GDlNyRi 270 (381)
...+.||+=||||||=
T Consensus 350 ~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNYRK 365 (434)
T ss_pred hhCcEEEEeccccHHH
Confidence 3568899999999985
No 28
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=25.24 E-value=1.7e+02 Score=32.68 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=40.2
Q ss_pred CeEEEEEeeccCCCCCC-----------C-ChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCCh
Q 046944 207 ETSFCFVCSHLASGGKE-----------G-DEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPE 274 (381)
Q Consensus 207 ~t~i~Fvn~HL~a~~~~-----------~-~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~ 274 (381)
+.+|..|..||.+.... + ....|.++...+..-+.- .|..-.+. .++++|||| +...
T Consensus 620 ~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~-------~~~~~~d~-~~viLGD~N---~y~~ 688 (798)
T COG2374 620 GEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLAT-------NPTGKADA-DIVILGDFN---DYAF 688 (798)
T ss_pred CcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhh-------CcccccCC-CEEEEeccc---hhhh
Confidence 34688899999886543 1 234566665555443221 11111222 389999999 5555
Q ss_pred HHHHHHHhhhcHHHH
Q 046944 275 ATTRLLVERSEWNVL 289 (381)
Q Consensus 275 ~~v~~li~~~~~~~L 289 (381)
+.+.+.++..-|..|
T Consensus 689 edpI~~l~~aGy~~l 703 (798)
T COG2374 689 EDPIQALEGAGYMNL 703 (798)
T ss_pred ccHHHHHhhcCchhh
Confidence 555566555334433
No 29
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.81 E-value=42 Score=27.94 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=20.8
Q ss_pred EEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEE
Q 046944 58 ASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQ 93 (381)
Q Consensus 58 V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~Q 93 (381)
+..|++.....-...+|..++.. . +|||++||.=
T Consensus 28 ~~~w~~~~~~~l~~~~l~~~~~~-~-~peiliiGTG 61 (109)
T cd00248 28 VVPWDGTSLSDLDPEALLPLLAE-D-RPDILLIGTG 61 (109)
T ss_pred eeecCCcCcccCCHHHHHHHHhh-C-CCCEEEEcCC
Confidence 47899887443222235544442 2 5999999964
Done!