Query 046944
Match_columns 381
No_of_seqs 205 out of 1174
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 1.5E-75 5.1E-80 570.8 28.8 272 48-348 2-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 1.3E-71 4.4E-76 544.1 25.5 257 49-344 3-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 2.4E-68 8.3E-73 528.8 30.1 286 47-365 18-337 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 7.6E-65 2.6E-69 505.2 28.0 272 48-361 20-341 (357)
5 2imq_X Salivary nitrophorin; f 100.0 9.4E-54 3.2E-58 412.4 22.0 245 49-343 2-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 99.7 4E-16 1.4E-20 142.2 18.3 222 53-342 7-255 (256)
7 4fva_A 5'-tyrosyl-DNA phosphod 99.7 7.5E-17 2.6E-21 147.3 11.2 225 51-340 9-255 (256)
8 3teb_A Endonuclease/exonucleas 99.7 4.3E-16 1.5E-20 144.1 14.5 240 55-341 3-266 (266)
9 4gew_A 5'-tyrosyl-DNA phosphod 99.7 2.8E-16 9.6E-21 155.8 11.6 227 49-340 113-361 (362)
10 4f1h_A Tyrosyl-DNA phosphodies 99.6 4.7E-15 1.6E-19 132.9 16.7 131 194-340 94-249 (250)
11 3l1w_A Uncharacterized protein 99.6 8.1E-15 2.8E-19 135.7 13.5 160 161-342 70-252 (257)
12 3g6s_A Putative endonuclease/e 99.6 9.7E-15 3.3E-19 136.1 12.6 131 193-342 113-261 (267)
13 3mpr_A Putative endonuclease/e 99.5 2.2E-14 7.7E-19 136.9 10.5 133 194-344 118-292 (298)
14 1ako_A Exonuclease III; AP-end 99.5 8.8E-14 3E-18 128.6 8.5 151 56-270 1-156 (268)
15 1zwx_A SMCL, sphingomyelinase- 99.4 7.4E-13 2.5E-17 125.2 11.1 68 193-269 128-199 (301)
16 3i41_A Beta-hemolysin; beta to 99.4 2.1E-12 7.1E-17 124.9 13.3 94 163-268 120-217 (317)
17 2ddr_A Sphingomyelin phosphodi 99.4 1.4E-12 4.7E-17 123.5 10.4 69 193-270 128-200 (306)
18 2jc4_A Exodeoxyribonuclease II 99.3 2.4E-12 8.1E-17 118.2 10.0 147 56-270 1-151 (256)
19 1vyb_A ORF2 contains A reverse 99.3 1.3E-11 4.5E-16 111.7 11.5 212 55-339 7-237 (238)
20 2jc5_A Exodeoxyribonuclease; h 99.2 3.8E-12 1.3E-16 116.9 4.5 36 305-341 218-256 (259)
21 2voa_A AF_EXO, XTHA, exodeoxyr 99.2 1.6E-10 5.5E-15 106.3 14.2 36 56-96 2-37 (257)
22 2o3h_A DNA-(apurinic or apyrim 99.2 4.2E-11 1.5E-15 112.4 8.7 41 52-96 25-65 (285)
23 1hd7_A DNA-(apurinic or apyrim 99.2 2.4E-11 8.3E-16 117.1 6.4 41 52-96 58-98 (318)
24 1wdu_A TRAS1 ORF2P; four-layer 99.2 6E-11 2E-15 109.4 8.6 128 195-341 102-243 (245)
25 2a40_B Deoxyribonuclease-1; WA 99.1 1.5E-11 5.1E-16 115.0 1.6 157 56-269 1-172 (260)
26 2j63_A AP-endonuclease; base e 99.1 2.9E-10 1E-14 116.5 11.1 39 54-96 148-189 (467)
27 1sr4_B CDT B, cytolethal diste 99.0 3.3E-09 1.1E-13 100.7 14.1 149 163-337 96-257 (261)
28 3g91_A MTH0212, exodeoxyribonu 99.0 4E-10 1.4E-14 104.9 7.7 37 55-95 3-39 (265)
29 3ngq_A CCR4-NOT transcription 98.9 1E-08 3.5E-13 103.0 13.8 71 208-283 195-268 (398)
30 2ei9_A Non-LTR retrotransposon 98.9 1.6E-09 5.6E-14 101.0 6.3 130 195-347 77-225 (240)
31 2f1n_A CDT B, cytolethal diste 98.8 3.1E-09 1.1E-13 100.4 6.0 233 50-336 10-258 (262)
32 4b8c_D Glucose-repressible alc 98.6 3.4E-09 1.2E-13 113.8 -0.3 72 206-282 545-617 (727)
33 3pt1_A UPF0364 protein YMR027W 25.2 13 0.00043 37.8 -0.6 16 255-270 375-390 (471)
34 2yka_B ORF57 protein, 52 kDa i 26.7 20 0.00069 21.2 0.0 10 302-311 7-16 (26)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=1.5e-75 Score=570.83 Aligned_cols=272 Identities=36% Similarity=0.633 Sum_probs=245.3
Q ss_pred CCCccceEEEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccC
Q 046944 48 NKETQNYKVFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKT 127 (381)
Q Consensus 48 ~~~~~~l~V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~ 127 (381)
|+..++++|+|+||||||..|+. +|.+||.+...+||||||||||+ ++++.+++.. +.....+|++.|+++|+..
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~--~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~~-~~~~~~~W~~~i~~~L~~~- 76 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKE--CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFFH-DTPKEEEWFKAVSEGLHPD- 76 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCS--CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTTC-CCHHHHHHHHHHHHHSCTT-
T ss_pred CceeeccEEEEEEEEcCCccCch--hHHHHhcccCCCCCeEEEEEEec-ccchhhhccc-CcchHHHHHHHHHHhcCCC-
Confidence 57789999999999999999865 48899987667899999999999 7777776543 3456789999999999742
Q ss_pred CCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEeC
Q 046944 128 PYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYE 207 (381)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~~ 207 (381)
..|.+|.+++|+||+|+||+|+++.++|++|++++|+||+||++||||||+|+|.+++
T Consensus 77 ----------------------~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ 134 (313)
T 3mtc_A 77 ----------------------AKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHN 134 (313)
T ss_dssp ----------------------SCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETT
T ss_pred ----------------------CCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECC
Confidence 2799999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccC-CChHHHHHHHhhhcH
Q 046944 208 TSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRIS-LPEATTRLLVERSEW 286 (381)
Q Consensus 208 t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~-~~~~~v~~li~~~~~ 286 (381)
++||||||||+||++ +.++||+|+.+|++++.|+.......|..|.+||+|||+|||||||+ ++.+++.++|++++|
T Consensus 135 ts~cFVnsHLaA~~~--~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~ 212 (313)
T 3mtc_A 135 TSICVVNSHLAAHIE--EYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDF 212 (313)
T ss_dssp EEEEEEEEECCCSGG--GHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCH
T ss_pred cEEEEEeeccCCCch--HHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCH
Confidence 999999999999986 68899999999999999976433334667899999999999999997 888999999999999
Q ss_pred HHHhccccc---------------------------------ccCCCCCCCcccCeeeeecCcceeeeeccC-CCCcCCC
Q 046944 287 NVLLENDQA---------------------------------KNGKKLRSPAWCDRIIWCGRGLKQHLYARG-ESKLSDH 332 (381)
Q Consensus 287 ~~Ll~~DQL---------------------------------dt~~k~R~PSWcDRIL~~~~~~~~~~Y~~~-~~~~SDH 332 (381)
+.|+++||| |+++|+|+|||||||||++.+++++.|.+. ++.+|||
T Consensus 213 ~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDH 292 (313)
T 3mtc_A 213 QMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDH 292 (313)
T ss_dssp HHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSS
T ss_pred HHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccccCEecccccceEEEecCCeEEEeeeeccCccCCCc
Confidence 999999999 456899999999999999999999999985 7999999
Q ss_pred cCeeeeEEEEEEeccc
Q 046944 333 RPVKAIFSVEVRVLRT 348 (381)
Q Consensus 333 rPV~a~f~v~v~~~~~ 348 (381)
|||+|.|.+.+.++..
T Consensus 293 rPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 293 KPVSSVFDIGVRVVAH 308 (313)
T ss_dssp CCEEEEEEEEEEEECC
T ss_pred cCeEEEEEEEEEEeec
Confidence 9999999999998753
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=1.3e-71 Score=544.08 Aligned_cols=257 Identities=34% Similarity=0.545 Sum_probs=213.9
Q ss_pred CCccceEEEEEEeeCCCCCCCCCCccccccCCC-----------CCCCcEEEEEEEeeecCcccccccCCCchhhHHHHH
Q 046944 49 KETQNYKVFASTWNVGGVAPTEDIDMEDWLHTP-----------NTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNS 117 (381)
Q Consensus 49 ~~~~~l~V~V~TWNv~g~~p~~~~dL~~wl~~~-----------~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~ 117 (381)
.++..++|||+||||||+.|+.+ |.+||.+. ..+||||||||||+.+ ...+|++
T Consensus 3 ~~~~~i~i~vgTwNv~g~~p~~~--L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~-------------~~~~W~~ 67 (316)
T 4a9c_A 3 DEPDMISVFIGTWNMGSVPPPKN--VTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSV-------------GDREWLD 67 (316)
T ss_dssp ---CEEEEEEEEEECTTSCCCSC--CHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCS-------------CHHHHHH
T ss_pred CCCCeEEEEEEEeEcCCcCCCcc--hhHhhcccccccCcccccccCCCcEEEEecccccc-------------chhHHHH
Confidence 47889999999999999999864 88999753 2468999999999832 2479999
Q ss_pred HHHHHHhccCCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcc
Q 046944 118 LIREALNKKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKG 197 (381)
Q Consensus 118 ~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG 197 (381)
.|+++|+... ...|.+|.+++|+|++|+||+|+++.++|++|++++|+||+||++||||
T Consensus 68 ~i~~~L~~~~---------------------~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKG 126 (316)
T 4a9c_A 68 LLRGGLKELT---------------------DLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKG 126 (316)
T ss_dssp HHHHHHHHHH---------------------SCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEE
T ss_pred HHHHHhcccc---------------------CCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCc
Confidence 9999998642 1379999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHH
Q 046944 198 SVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATT 277 (381)
Q Consensus 198 ~V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v 277 (381)
||+|+|.+++++||||||||+||+. +.++||+|+.+|++++.|+... ....+.+.+||||||+|||||||+++.+++
T Consensus 127 aV~ir~~~~~ts~~FVn~HLaAg~~--~~~~Rn~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v 203 (316)
T 4a9c_A 127 AVGVSFMFNGTSFGFVNCHLTSGNE--KTARRNQNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEI 203 (316)
T ss_dssp EEEEEEEETTEEEEEEEEECCCSTT--CHHHHHHHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHH
T ss_pred eEEEEEEECCcEEEEEEeccccCch--HHHHHHHHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHH
Confidence 9999999999999999999999987 6899999999999999986531 112233457899999999999999999999
Q ss_pred HHHHhhhcHHHHhccccc-------------------------------c---------cCCCCCCCcccCeeeeecC--
Q 046944 278 RLLVERSEWNVLLENDQA-------------------------------K---------NGKKLRSPAWCDRIIWCGR-- 315 (381)
Q Consensus 278 ~~li~~~~~~~Ll~~DQL-------------------------------d---------t~~k~R~PSWcDRIL~~~~-- 315 (381)
.+++++++|..|+++||| + ++.|+|+|||||||||++.
T Consensus 204 ~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~ 283 (316)
T 4a9c_A 204 LNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPE 283 (316)
T ss_dssp HHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTT
T ss_pred HHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCC
Confidence 999999999999999999 1 1125699999999999975
Q ss_pred -cceeeeecc-CCCCcCCCcCeeeeEEEEEE
Q 046944 316 -GLKQHLYAR-GESKLSDHRPVKAIFSVEVR 344 (381)
Q Consensus 316 -~~~~~~Y~~-~~~~~SDHrPV~a~f~v~v~ 344 (381)
.+.++.|.+ .++.+||||||+|.|.+.|.
T Consensus 284 ~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 284 THIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 478899997 58999999999999999884
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=2.4e-68 Score=528.79 Aligned_cols=286 Identities=34% Similarity=0.599 Sum_probs=243.9
Q ss_pred CCCCccceEEEEEEeeCCCCCCCCCCccccccCCC-CCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhc
Q 046944 47 DNKETQNYKVFASTWNVGGVAPTEDIDMEDWLHTP-NTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNK 125 (381)
Q Consensus 47 ~~~~~~~l~V~V~TWNv~g~~p~~~~dL~~wl~~~-~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~ 125 (381)
.+++.++++|+|+||||+|..|+. +|.+||.+. ..+||||||||||+++++++++++. +......|++.|+++|+.
T Consensus 18 e~~~~~~~~i~v~TwNv~g~~~~~--~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~~~w~~~i~~~L~~ 94 (347)
T 1i9z_A 18 EFSEHKNVKIFVASYNLNGCSATT--KLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKRREWESCVKRLLNG 94 (347)
T ss_dssp GTEEEEEEEEEEEEEECTTCCCCS--CCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCcEEEEEeEecCCCCCch--hHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhHHHHHHHHHHHHhh
Confidence 368889999999999999999854 589999753 3689999999999999999998774 566788999999999985
Q ss_pred cCCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEE
Q 046944 126 KTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQL 205 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l 205 (381)
... .+..|.++.+.+|+|++|+||+|++++++|+++++++++||++|++||||+|+++|.+
T Consensus 95 ~~~-------------------~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~ 155 (347)
T 1i9z_A 95 KCT-------------------SGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDY 155 (347)
T ss_dssp TCC-------------------SSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEE
T ss_pred ccc-------------------CCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEE
Confidence 421 1247999999999999999999999999999999999999999999999999999999
Q ss_pred eCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhhc
Q 046944 206 YETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERSE 285 (381)
Q Consensus 206 ~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~~ 285 (381)
++++||||||||+||+. +..+|++|+.+|++++.|... ..|.+||++|||||||||++++.+++.++|++++
T Consensus 156 ~~~~l~fvn~HLaa~~~--~~~~R~~d~~~I~~~l~f~~~------~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~ 227 (347)
T 1i9z_A 156 EDTGLCFITSHLAAGYT--NYDERDHDYRTIASGLRFRRG------RSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGK 227 (347)
T ss_dssp TTEEEEEEEEECCCCSS--CHHHHHHHHHHHHHHCCCGGG------CCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTC
T ss_pred CCeEEEEEEecCCCCCc--cHHHHHHHHHHHHHhhccCcc------cccccCccEEEecccccccCCCHHHHHHHHhhcc
Confidence 99999999999999986 567899999999999988652 3578899999999999999999999999999999
Q ss_pred HHHHhccccc---------------------------------ccCCCCCCCcccCeeeeecCcceeeeeccCCCCcCCC
Q 046944 286 WNVLLENDQA---------------------------------KNGKKLRSPAWCDRIIWCGRGLKQHLYARGESKLSDH 332 (381)
Q Consensus 286 ~~~Ll~~DQL---------------------------------dt~~k~R~PSWcDRIL~~~~~~~~~~Y~~~~~~~SDH 332 (381)
|..|+++||| +++.|+|+|||||||||++ .+++..|.+.++.+|||
T Consensus 228 ~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH 306 (347)
T 1i9z_A 228 LSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDH 306 (347)
T ss_dssp HHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSB
T ss_pred HHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccccccccCCcccceEEEeC-CEEEEEEEecCccCCCc
Confidence 9999999998 3356899999999999988 89999999988999999
Q ss_pred cCeeeeEEEEEEeccchhhhhhhhHHHHHHhhc
Q 046944 333 RPVKAIFSVEVRVLRTLKGIQSFFLSERFERIT 365 (381)
Q Consensus 333 rPV~a~f~v~v~~~~~~~~~~~~~~~~~~~~~~ 365 (381)
+||+|.|.+.|+++++.++-+ .+ ++-+++++
T Consensus 307 ~PV~a~f~~~v~~~~~~~~~~-~~-~~~~~~~~ 337 (347)
T 1i9z_A 307 RPIYATYEANIVKVDREKKKI-LF-EELYNQRK 337 (347)
T ss_dssp CCEEEEEEEEEEEECHHHHHH-HH-HHHHHHHH
T ss_pred CCceeEEEEEEecCCHHHHHH-HH-HHHHHHHH
Confidence 999999999999999865322 33 55566544
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=7.6e-65 Score=505.20 Aligned_cols=272 Identities=27% Similarity=0.420 Sum_probs=230.1
Q ss_pred CCCccceEEEEEEeeCCCCC-CCCCCccccccCC--CCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHh
Q 046944 48 NKETQNYKVFASTWNVGGVA-PTEDIDMEDWLHT--PNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALN 124 (381)
Q Consensus 48 ~~~~~~l~V~V~TWNv~g~~-p~~~~dL~~wl~~--~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~ 124 (381)
+++.++++|+|+||||+|.. ++. +|.+|+.+ ...+||||||||||+++. ...|++.|.++|+
T Consensus 20 ~~~~~~l~i~v~TwNv~g~~~~~~--~L~~~l~~~~~~~~pDI~viGlQEi~~~-------------~~~W~~~l~~~L~ 84 (357)
T 2xsw_A 20 YFPDRNVALFVATWNMQGQKELPP--SLDEFLLPAEADYAQDLYVIGVQEGCSD-------------RREWETRLQETLG 84 (357)
T ss_dssp HCTTCEEEEEEEEEECTTCSSCCS--CCHHHHSCTTCCSCCSEEEEEEESCCSC-------------HHHHHHHHHHHHC
T ss_pred cCCCCCceEEEEEEecCCCCCCcc--cHHHHhccccccCCCCEEEEEeeeccch-------------HHHHHHHHHHHhC
Confidence 46788999999999999864 443 57899864 236799999999999631 3689999999986
Q ss_pred ccCCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEE
Q 046944 125 KKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQ 204 (381)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~ 204 (381)
..|+++.+.+|+|++|+||+|++++++|+++++++++||+||++||||+|+|+|.
T Consensus 85 -------------------------~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~ 139 (357)
T 2xsw_A 85 -------------------------PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFT 139 (357)
T ss_dssp -------------------------TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred -------------------------CcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEE
Confidence 2699999999999999999999999999999999999999999999999999999
Q ss_pred EeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCC------CccccccccEEEeCccccccCCChHHHH
Q 046944 205 LYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNL------PRNILDHDRVILLGDLNYRISLPEATTR 278 (381)
Q Consensus 205 l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~------p~~i~~~d~vf~~GDlNyRi~~~~~~v~ 278 (381)
+++++||||||||+||+. +..+||+|+.+|++.+.|+....... .+.+.+||+|||+||||||++.+++++.
T Consensus 140 ~~~t~~~Fvn~HLaa~~~--~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~ 217 (357)
T 2xsw_A 140 FFGTSFLFITSHFTSGDG--KVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVD 217 (357)
T ss_dssp ETTEEEEEEEEECCCSTT--CHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHH
T ss_pred ECCeEEEEEEEccCCCCc--hHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHH
Confidence 999999999999999986 67899999999999999875321111 1234578999999999999999999999
Q ss_pred HHHh---hhcHHHHhccccc---------------------------------ccCCCCCCCcccCeeeeecC---ccee
Q 046944 279 LLVE---RSEWNVLLENDQA---------------------------------KNGKKLRSPAWCDRIIWCGR---GLKQ 319 (381)
Q Consensus 279 ~li~---~~~~~~Ll~~DQL---------------------------------dt~~k~R~PSWcDRIL~~~~---~~~~ 319 (381)
.+++ .++|+.|+++||| |+++|+|+|||||||||++. .+++
T Consensus 218 ~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydts~k~R~PaWcDRIL~~~~~~~~i~~ 297 (357)
T 2xsw_A 218 ALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKGDICP 297 (357)
T ss_dssp HHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEEESSTTSEEE
T ss_pred HHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCCccccccCCCCCCcccceEEEecCCCCceEE
Confidence 9886 4689999999998 34568999999999999964 6889
Q ss_pred eeecc-CCCCcCCCcCeeeeEEEEEEeccch-hhhhhhhHHHHH
Q 046944 320 HLYAR-GESKLSDHRPVKAIFSVEVRVLRTL-KGIQSFFLSERF 361 (381)
Q Consensus 320 ~~Y~~-~~~~~SDHrPV~a~f~v~v~~~~~~-~~~~~~~~~~~~ 361 (381)
..|.+ .++.+||||||+|.|.+.|+...+. +.....|.++-|
T Consensus 298 ~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~~~ipl~~~~f~~~~~ 341 (357)
T 2xsw_A 298 VSYSSCPGIKTSDHRPVYGLFRVKVRPGRDNIPLAAGKFDRELY 341 (357)
T ss_dssp EEEEECTTCCSSSSCCEEEEEEEECCCCCSCSCBCSSCCCHHHH
T ss_pred EEeEecccccCCCcCCceeEEEEEEecCCccccccccccCHHHH
Confidence 99998 5799999999999999999887644 233334544443
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=9.4e-54 Score=412.44 Aligned_cols=245 Identities=18% Similarity=0.281 Sum_probs=205.6
Q ss_pred CCccceEEEEEEeeCCCCCCCCCCccccccCC-CCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccC
Q 046944 49 KETQNYKVFASTWNVGGVAPTEDIDMEDWLHT-PNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKT 127 (381)
Q Consensus 49 ~~~~~l~V~V~TWNv~g~~p~~~~dL~~wl~~-~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~ 127 (381)
++.++++|+|+||||++..|+. ++.+|+.. ....||||||||||+.+ ++.+. .....|.+.|.++|+..
T Consensus 2 ~~~~~~~i~V~T~Nv~~~~~~~--~l~~wl~~~~~~~pDI~viglQEv~~-~~~~~------~~~~~w~~~l~~~L~~~- 71 (282)
T 2imq_X 2 SPPAQLSVHTVSWNSGHERAPT--NLEELLGLNSGETPDVIAVAVQGFGF-QTDKP------QQGPACVKNFQSLLTSK- 71 (282)
T ss_dssp -CCSEEEEEEEEEEEETCCCCS--CCHHHHTCTTSCCCSEEEEEEEESCT-TTCTT------CCHHHHHHHHHHHHHHT-
T ss_pred CCCCCcEEEEEEEeCCCCcCch--hHHHHhcccccCCCCEEEEEeeeecc-ccccc------hhhHHHHHHHHHhcCCC-
Confidence 3567899999999999888765 47899964 23789999999999964 33221 23578999999999732
Q ss_pred CCcchhhhhcccCCCCCCCCCCCCeEEEEE--eeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEE
Q 046944 128 PYQDNKLRKLQSISPDNDVQISPGFRCIIC--KQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQL 205 (381)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s--~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l 205 (381)
.|..+.+ .+|+|++++||+|.++.+.|+++.+ +|++|.+||||+++++|.+
T Consensus 72 -----------------------~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~ 124 (282)
T 2imq_X 72 -----------------------GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTI 124 (282)
T ss_dssp -----------------------TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEE
T ss_pred -----------------------ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEE
Confidence 6999988 8999999999999999888887755 4667889999999999999
Q ss_pred eCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhhc
Q 046944 206 YETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERSE 285 (381)
Q Consensus 206 ~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~~ 285 (381)
++++||||||||++++. +.++|++++..|++++.+ +.++++||||||||||++.+.+++.+++++++
T Consensus 125 ~~~~~~fvn~HL~~~~~--~~~~R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~ 191 (282)
T 2imq_X 125 YNKRFSFTTSRMSDEDV--TSTNTKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNN 191 (282)
T ss_dssp TTEEEEEEEEECCTTCC--CTTSSSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTC
T ss_pred CCEEEEEEEECCCCCCc--hHHHHHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhcc
Confidence 99999999999999864 456789999999876542 34678899999999999999999999999999
Q ss_pred HHHHhcccccc--------------------c---------CCCCCCCcccCeeeeec---CcceeeeeccC-CCCcCCC
Q 046944 286 WNVLLENDQAK--------------------N---------GKKLRSPAWCDRIIWCG---RGLKQHLYARG-ESKLSDH 332 (381)
Q Consensus 286 ~~~Ll~~DQLd--------------------t---------~~k~R~PSWcDRIL~~~---~~~~~~~Y~~~-~~~~SDH 332 (381)
|..|+++|||. | |.++|+|||||||||++ ..+++..|.+. ++.+|||
T Consensus 192 ~~~l~~~DqL~~~~~~~~f~~f~e~~i~f~PTYk~~~~~~~y~~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH 271 (282)
T 2imq_X 192 IDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEH 271 (282)
T ss_dssp HHHHHTTBTHHHHHHTTSSTTCBCCCCCSCCCBCBCTTSSCBCTTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSS
T ss_pred HHHHhhhhHHHHhhccccccccccCCcCCCCCccccCCCccccccCCccccceEEEecCCCCceEeeEecCCCCCCCCCc
Confidence 99999999971 1 23479999999999996 36899999986 7999999
Q ss_pred cCeeeeEEEEE
Q 046944 333 RPVKAIFSVEV 343 (381)
Q Consensus 333 rPV~a~f~v~v 343 (381)
+||+|.|.+++
T Consensus 272 ~PV~a~f~~~~ 282 (282)
T 2imq_X 272 RPVLAKFRVTL 282 (282)
T ss_dssp CCEEEEEEEEC
T ss_pred CCeEEEEEEEC
Confidence 99999999864
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.71 E-value=4e-16 Score=142.21 Aligned_cols=222 Identities=18% Similarity=0.227 Sum_probs=122.9
Q ss_pred ceEEEEEEeeCCCCCCCCC---C-ccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCC
Q 046944 53 NYKVFASTWNVGGVAPTED---I-DMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTP 128 (381)
Q Consensus 53 ~l~V~V~TWNv~g~~p~~~---~-dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~ 128 (381)
.-.+.|+||||.|...... . .|.++|. ...|||+ ||||+.+ .+...+.+.+.
T Consensus 7 ~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~--~~~pDIi--~LQEv~~----------------~~~~~l~~~~~---- 62 (256)
T 4gz1_A 7 SSTISFITWNIDGLDGCNLPERARGVCSCLA--LYSPDVV--FLQEVIP----------------PYCAYLKKRAA---- 62 (256)
T ss_dssp GGEEEEEEEECCTTCCTTHHHHHHHHHHHHH--HHCCSEE--EEEEECH----------------HHHHHHHHHCT----
T ss_pred CCcEEEEEEEcCCCcCcCHHHHHHHHHHHHH--HcCCCEE--EEEcCCH----------------HHHHHHHhhcc----
Confidence 3478999999998654321 0 1556665 2579976 9999832 11223333322
Q ss_pred CcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEeCe
Q 046944 129 YQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYET 208 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~~t 208 (381)
.|..... ...+.+.+++.+++....+ ... .....+..+.++.+.+.+...+.
T Consensus 63 ----------------------~~~~~~~-~~~~~~~~~l~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~ 114 (256)
T 4gz1_A 63 ----------------------SYTIITG-NEEGYFTAILLKKGRVKFK---SQE--IIPFPNTKMMRNLLCVNVSLGGN 114 (256)
T ss_dssp ----------------------TEEEEES-CSSSSEEEEEEETTTEEEE---EEE--EEECTTCSSCCEEEEEEEEETTE
T ss_pred ----------------------ccceeec-cccCCceEEEEEeccccce---ecc--cccCCcccccceEEEEEEEeCCE
Confidence 2332222 2223344566665532111 111 11223345567889999999999
Q ss_pred EEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhh----
Q 046944 209 SFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERS---- 284 (381)
Q Consensus 209 ~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~---- 284 (381)
.+.++|+||.++.. ....|.+++..|++.+.-. .+...+|++||||.+ +.+.........
T Consensus 115 ~~~v~~~Hl~~~~~--~~~~~~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~~---~~~~~~~~~~~~~~~~ 178 (256)
T 4gz1_A 115 EFCLMTSHLESTRE--HSAERIRQLKTVLGKMQEA-----------PDSTTVIFAGDTNLR---DQEVIKCGGLPDNVFD 178 (256)
T ss_dssp EEEEEECBCCCSGG--GHHHHHHHHHHHHHHHHHS-----------CTTSEEEEEEECCCC---HHHHHHHTCSCTTEEE
T ss_pred EEEEEeeccccccc--chhhhhHHHHHHhhhhhhc-----------cCcceEEEeCccCCC---cchhhhhhhccchhhh
Confidence 99999999998764 4456777888887654310 112359999999952 222222221111
Q ss_pred cHHHHhccccc----cc------CCCCCCCcccCeeeeecCc--ceeeeec-----c--CCCCcCCCcCeeeeEEEE
Q 046944 285 EWNVLLENDQA----KN------GKKLRSPAWCDRIIWCGRG--LKQHLYA-----R--GESKLSDHRPVKAIFSVE 342 (381)
Q Consensus 285 ~~~~Ll~~DQL----dt------~~k~R~PSWcDRIL~~~~~--~~~~~Y~-----~--~~~~~SDHrPV~a~f~v~ 342 (381)
.|..+...+.. +. ......+...|+||+++.. +....+. . .....|||+||.|.|++-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 179 AWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVV 255 (256)
T ss_dssp HHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEEC
T ss_pred HHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEEE
Confidence 13333222222 00 1112223348999998642 3333332 2 234579999999999873
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.69 E-value=7.5e-17 Score=147.31 Aligned_cols=225 Identities=14% Similarity=0.166 Sum_probs=121.4
Q ss_pred ccceEEEEEEeeCCCCCCCCCC----ccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhcc
Q 046944 51 TQNYKVFASTWNVGGVAPTEDI----DMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKK 126 (381)
Q Consensus 51 ~~~l~V~V~TWNv~g~~p~~~~----dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~ 126 (381)
.+..++.|+||||.|..+.... .|.++|. ...|||+ ||||+.+-. ...+.+.+.
T Consensus 9 ~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~--~~~pDIi--~LQEv~~~~----------------~~~l~~~~~-- 66 (256)
T 4fva_A 9 LKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK--NVNPDIL--FLQEVVDRD----------------LAPIDKLQS-- 66 (256)
T ss_dssp CTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHH--HHCCSEE--EEEEECSTT----------------CHHHHGGGG--
T ss_pred CCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHH--HcCCCEE--EEEecChhH----------------hHHHHHhcC--
Confidence 4556899999999986543211 1556665 3579977 999985311 112222221
Q ss_pred CCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEe
Q 046944 127 TPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLY 206 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~ 206 (381)
.|.........+.+.++++++.+. ......+. +.+..+..+.+.+.+.+.
T Consensus 67 ------------------------~~~~~~~~~~~~~g~~il~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~ 116 (256)
T 4fva_A 67 ------------------------LYKIYYSNKGCQYYTAILVSKMFD----VEKHDVIH--FQNSGMYRTLQILEGSIG 116 (256)
T ss_dssp ------------------------TEEEEESSTTSSSEEEEEEETTCE----EEEEEEEE--CTTCSSCCEEEEEEEEET
T ss_pred ------------------------CceEeecCCCCCcceEEEEeeccc----ceeccccc--CCCCcccceeEEEEEEeC
Confidence 233333333344566677776542 11222121 222234577889999999
Q ss_pred CeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhhcH
Q 046944 207 ETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERSEW 286 (381)
Q Consensus 207 ~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~~~ 286 (381)
+..|.++|+||.+... ....|..++..+++.+.... ...+...+|++||||.+-.........+ ...|
T Consensus 117 g~~~~v~~~Hl~~~~~--~~~~~~~q~~~~~~~~~~~~--------~~~~~~~vIl~GDfN~~~~~~~~~~~~~--~d~~ 184 (256)
T 4fva_A 117 GLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREII--------AQNPGALVFFGGDLNLRDEEVSRVPDGV--KDAW 184 (256)
T ss_dssp TEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHH--------HHSTTCEEEEEEECCCCGGGCCCCCTTC--EEHH
T ss_pred CeEEEEEEecCCCCCc--chHHHHHHHHHHHHHhhhhh--------hccCCCcEEEeccCCCCcchhhhhhcch--hhHH
Confidence 9999999999998754 34456666666654321000 0012235999999996432110000000 0113
Q ss_pred HHHhccccc-ccC--------CCCCCCc-ccCeeeeecCcceeeeecc--------CCCCcCCCcCeeeeEE
Q 046944 287 NVLLENDQA-KNG--------KKLRSPA-WCDRIIWCGRGLKQHLYAR--------GESKLSDHRPVKAIFS 340 (381)
Q Consensus 287 ~~Ll~~DQL-dt~--------~k~R~PS-WcDRIL~~~~~~~~~~Y~~--------~~~~~SDHrPV~a~f~ 340 (381)
..+...++. .|+ .....|. ..|+||+++ .++...+.. .....|||+||.|.|+
T Consensus 185 ~~~~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~-~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 185 EAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSG-PLDKVKFTLEGRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp HHTTCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEES-SCCEEEEEEECCSCCTTTCSCSCSSCEEEEEEE
T ss_pred HHhCCCCCCCcccccccCcccccCCCCCcCeEEEEEcC-CceeeEEEEEeeEecCCCCCCcCcccCEEEEEc
Confidence 333222222 111 1122232 379999975 344444331 1234699999999997
No 8
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.68 E-value=4.3e-16 Score=144.09 Aligned_cols=240 Identities=15% Similarity=0.119 Sum_probs=129.1
Q ss_pred EEEEEEeeCCCCCCCCC-Cc---cccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCCCc
Q 046944 55 KVFASTWNVGGVAPTED-ID---MEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTPYQ 130 (381)
Q Consensus 55 ~V~V~TWNv~g~~p~~~-~d---L~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~~~ 130 (381)
.+.|+||||.+...... .+ |.++|. ...|||+ ||||+........+... -....|...+.+.|.+..
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~--~~~~DIi--~LQEv~~~~~~~~~~~~--~~~d~~~~~~~~~l~~~~--- 73 (266)
T 3teb_A 3 AMKILTVNVHAWLEENQMEKIDILARTIA--EKQYDVI--AMQEVNQLMNNKIIFDD--IREENYAWVLLETLQKYT--- 73 (266)
T ss_dssp CEEEEEEECCTTCSTTHHHHHHHHHHHHH--HHTCSEE--EEEEEEEETTSCEEETT--EETTCHHHHHHHHHTTTC---
T ss_pred ceEEEEEecccccCcchhHHHHHHHHHHH--hcCCCEE--EEEEccccccccccccc--cccccHHHHHHHHHHHhC---
Confidence 47899999976543221 11 334554 2579977 99999644322211100 011124444556666431
Q ss_pred chhhhhcccCCCCCCCCCCCCeEEEEE-----eeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEE
Q 046944 131 DNKLRKLQSISPDNDVQISPGFRCIIC-----KQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQL 205 (381)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~Y~~v~s-----~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l 205 (381)
...|..+.. ....+..++|+.|.++.. ......+..+ ...+ +..++.+.+.+.+
T Consensus 74 ------------------~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~-~~~~~~~~~~-~~~~-~~~r~~~~~~~~~ 132 (266)
T 3teb_A 74 ------------------DTDYYLHWSNSHIGFGKYNEGVAVITRHKIKA-EDEFYCTFAQ-SVRT-ISARRIVSITINY 132 (266)
T ss_dssp ------------------CSCCEEEEEEEEECSTTEEEEEEEEESSCCSE-EEEEECSSCC-CTTC-TTCCEEEEEEEEE
T ss_pred ------------------CCCeEEEEeccccCccccCCeEEEEECceecC-ceeEEeCCCC-CCCC-cccceEEEEEEEe
Confidence 113543311 122334777778876532 1111111110 1112 4568999999999
Q ss_pred eCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhh-
Q 046944 206 YETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERS- 284 (381)
Q Consensus 206 ~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~- 284 (381)
.+..|.++|+||.+... ....|..++..|++.+.- ...+|++||||..-.........++..+
T Consensus 133 ~~~~~~v~~~Hl~~~~~--~~~~r~~q~~~l~~~~~~--------------~~~~il~GDfN~~~~~~~~~~~~l~~~~l 196 (266)
T 3teb_A 133 EGQDIEFYSCHMNLPNC--ETEDMGKNIQTILNRTQN--------------SNLKILMGDFNTDAIGNVAAYENILSQGL 196 (266)
T ss_dssp TTEEEEEEEEECCCTTC--TTCCHHHHHHHHHTSSCS--------------CCEEEEEEECCCCTTTCHHHHHHHHTTTC
T ss_pred CCeEEEEEEecCCCccC--ChHHHHHHHHHHHHHHhc--------------CCcEEEEeECCCCCCCCCcHHHhhccccc
Confidence 99999999999998753 223578888888875421 2459999999963311222333333322
Q ss_pred --cHHHHhccccc-------ccCCCCCCCcccCeeeeecCcceeeeeccC-----CCCcCCCcCeeeeEEE
Q 046944 285 --EWNVLLENDQA-------KNGKKLRSPAWCDRIIWCGRGLKQHLYARG-----ESKLSDHRPVKAIFSV 341 (381)
Q Consensus 285 --~~~~Ll~~DQL-------dt~~k~R~PSWcDRIL~~~~~~~~~~Y~~~-----~~~~SDHrPV~a~f~v 341 (381)
.|..+-..+.- .++.........||||... .+....+... ....|||+||.+.|++
T Consensus 197 ~d~~~~~~~~~~~~t~~~~~~~~~~~~~~~riD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 197 FDTYVMAEKKDDGITVDKSIHGWDNDKAKKRLDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp EEHHHHCSEECCCCCEECC------CTTEECCEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEECC
T ss_pred cchHHhhccccCCccccCccCCcCcCCcCCeeEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEEC
Confidence 12211111110 1111222334589999843 5555544431 2577999999998753
No 9
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.66 E-value=2.8e-16 Score=155.82 Aligned_cols=227 Identities=14% Similarity=0.168 Sum_probs=127.5
Q ss_pred CCccceEEEEEEeeCCCCCCCCCC----ccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHh
Q 046944 49 KETQNYKVFASTWNVGGVAPTEDI----DMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALN 124 (381)
Q Consensus 49 ~~~~~l~V~V~TWNv~g~~p~~~~----dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~ 124 (381)
......++.|+||||+|....... .|.+||. ...|||+ ||||+.+-. ...+.+.+
T Consensus 113 ~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~--~~~PDIV--~LQEv~~~~----------------~~~l~~~~- 171 (362)
T 4gew_A 113 EDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK--NVNPDIL--FLQEVVDRD----------------LAPIDKLQ- 171 (362)
T ss_dssp CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHH--HHCCSEE--EEEEECSTT----------------CHHHHGGG-
T ss_pred CCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHH--HcCCCEE--EEEcCChhH----------------hHHHHHhc-
Confidence 355678999999999987543211 1567775 3689987 999984310 11222222
Q ss_pred ccCCCcchhhhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEE
Q 046944 125 KKTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQ 204 (381)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~ 204 (381)
..|.......-.+.+++|++|+.+. ......... .+.....+++.+.+.
T Consensus 172 -------------------------~~y~~~~~~~~~~~G~aIlsk~~i~----~~~~~~~~~--~~~~~~r~~l~~~i~ 220 (362)
T 4gew_A 172 -------------------------SLYKIYYSNKGCQYYTAILVSKMFD----VEKHDVIHF--QNSGMYRTLQILEGS 220 (362)
T ss_dssp -------------------------GTEEEEESSTTSSSEEEEEEETTEE----EEEEEEEEC--TTCSSCCEEEEEEEE
T ss_pred -------------------------CCceEEeCCCCCCceEEEEEeccCc----cccccccCC--CCCcccceEEEEEEE
Confidence 1455555555556678888886531 112211111 122234678889999
Q ss_pred EeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhh
Q 046944 205 LYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERS 284 (381)
Q Consensus 205 l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~ 284 (381)
+.+..|.++|+||.+... ...+|..++..+...+.... .......||++||||.+-.........+ ..
T Consensus 221 ~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~--------~~~~~~pvIl~GDFN~~p~~~~~~~~gl--~D 288 (362)
T 4gew_A 221 IGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREII--------AQNPGALVFFGGDLNLRDEEVSRVPDGV--KD 288 (362)
T ss_dssp ETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHH--------HHCTTCEEEEEEECCCCGGGCCCCCTTC--EE
T ss_pred ECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhh--------hcCCCCCeEEeecCCCCCcccchhcchH--HH
Confidence 999999999999998754 45567777777765432000 0011235999999995432110000000 01
Q ss_pred cHHHHhccccc-ccC--------CCCCCCcc-cCeeeeecCcceeeeecc--------CCCCcCCCcCeeeeEE
Q 046944 285 EWNVLLENDQA-KNG--------KKLRSPAW-CDRIIWCGRGLKQHLYAR--------GESKLSDHRPVKAIFS 340 (381)
Q Consensus 285 ~~~~Ll~~DQL-dt~--------~k~R~PSW-cDRIL~~~~~~~~~~Y~~--------~~~~~SDHrPV~a~f~ 340 (381)
-|..+...++. .|+ ...+.|.| .||||+++ .++...+.. .....|||+||+|.|+
T Consensus 289 a~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~-~l~~~~~~vi~~~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 289 AWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSG-PLDKVKFTLEGRQRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp HHHHTTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEES-SCCEEEEEEECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred HHHHhCCCCCCCcCcccccCcccccCCCCCcceEEEEEcC-CcceeEEEEEeeeecCCCCCCCCcccCEEEEEc
Confidence 13333222222 111 12233333 79999965 344444431 1234699999999997
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.64 E-value=4.7e-15 Score=132.86 Aligned_cols=131 Identities=16% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCcceEEEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCC
Q 046944 194 GNKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLP 273 (381)
Q Consensus 194 GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~ 273 (381)
...+.+.+.+.+.+..+.++++||.+... ....|.+++.+|++.+.-. .....+|++||||. .+
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~--~~~~r~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~---~~ 157 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKN--QSQERTKQLRVVLQKIKEA-----------PEDAIVIFAGDTNL---RD 157 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGG--GHHHHHHHHHHHHHHHHHS-----------CTTEEEEEEEECCC---CH
T ss_pred ccceEEEEEEecCCcEEEEeccccccccc--cHHHHHHHHHHHHHHHHhc-----------CCCCCEEEEEecCC---CC
Confidence 34667888888999999999999998754 4556778888887764310 11235999999994 22
Q ss_pred hHHHHHHHhh----hcHHHHhccccc----cc-----CCCCCCCcc-cCeeeeecCc----ceeeeecc-------CCCC
Q 046944 274 EATTRLLVER----SEWNVLLENDQA----KN-----GKKLRSPAW-CDRIIWCGRG----LKQHLYAR-------GESK 328 (381)
Q Consensus 274 ~~~v~~li~~----~~~~~Ll~~DQL----dt-----~~k~R~PSW-cDRIL~~~~~----~~~~~Y~~-------~~~~ 328 (381)
.+........ ..|..+...+.. +. ......|.+ .|+||+++.. +....+.. ....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (250)
T 4f1h_A 158 AEVANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIGMEKLDCGRY 237 (250)
T ss_dssp HHHHTTTSSCTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEEEECCSCCTTSSC
T ss_pred cchhhhhhccccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEEEecccccCCCCC
Confidence 2221111111 113333222222 00 011222333 7999997642 22322221 1245
Q ss_pred cCCCcCeeeeEE
Q 046944 329 LSDHRPVKAIFS 340 (381)
Q Consensus 329 ~SDHrPV~a~f~ 340 (381)
.|||+||.|.|+
T Consensus 238 ~SDH~pv~a~f~ 249 (250)
T 4f1h_A 238 TSDHWGIYCTFN 249 (250)
T ss_dssp SCSBCEEEEEEE
T ss_pred CCcccCEEEEEe
Confidence 699999999986
No 11
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.59 E-value=8.1e-15 Score=135.68 Aligned_cols=160 Identities=18% Similarity=0.106 Sum_probs=93.0
Q ss_pred ecEEEEEEEecCCCCcccccee--e----eeecccccCCCCcceEEEEEEEe--CeEEEEEeeccCCCCCCCChhHHHHH
Q 046944 161 VGIFISVWIRSDLRPYIRHPSV--S----CVGCGIMGCLGNKGSVSVRFQLY--ETSFCFVCSHLASGGKEGDEKYRNSD 232 (381)
Q Consensus 161 vGi~L~Vfvr~~l~~~I~~v~~--s----~v~~G~~g~~GNKG~V~i~~~l~--~t~i~Fvn~HL~a~~~~~~~~~Rn~d 232 (381)
.|..++||.|++..+.+..-.. + ..+.|. +....++++.+.+... +..+.++|+||.+.. ...|..+
T Consensus 70 ~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q 144 (257)
T 3l1w_A 70 QGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAG 144 (257)
T ss_dssp CSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHH
T ss_pred CCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHH
Confidence 4567888888663322221111 1 012222 3345788888998874 689999999999863 3568888
Q ss_pred HHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhhcHHHHhcc----cccccCCCCC--CC--
Q 046944 233 VAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERSEWNVLLEN----DQAKNGKKLR--SP-- 304 (381)
Q Consensus 233 ~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~~~~~Ll~~----DQLdt~~k~R--~P-- 304 (381)
+..|++.+.- .+... .+|++||||. .+.+....++..+ +...... ....|+.... .|
T Consensus 145 ~~~l~~~i~~----------~~~~~-pvil~GDfN~---~~~~~~~~~l~~~-l~d~~~~~~~~~~~~t~~~~~~~~~~~ 209 (257)
T 3l1w_A 145 MTVILEELHD----------KIAQY-PTLLMGDFNA---ESGEEVHQLVQKK-FQDSKNLATHYGPRGTFQNFTYTKPWA 209 (257)
T ss_dssp HHHHHHHTHH----------HHHHS-CEEEEEECCC---CTTSHHHHHHTTT-CEEGGGTSEEESCSCCBCTTCTTCCGG
T ss_pred HHHHHHHHHH----------HcCCC-CEEEEeeCCC---CCCcHHHHHhhhh-ccchhhhhcccCCCCcccCCcccCCCC
Confidence 8888775420 00111 5999999994 4444444454432 2211111 1011221110 12
Q ss_pred --cccCeeeeecCcceeeeeccC-----CCCcCCCcCeeeeEEEE
Q 046944 305 --AWCDRIIWCGRGLKQHLYARG-----ESKLSDHRPVKAIFSVE 342 (381)
Q Consensus 305 --SWcDRIL~~~~~~~~~~Y~~~-----~~~~SDHrPV~a~f~v~ 342 (381)
...|+||. .+++...+... ....|||.||.+.|.+.
T Consensus 210 ~~~riD~i~~--~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 210 ELEEIDYIYV--KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp GCBCCEEEEE--ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred CCCceeEEEE--CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 45799999 55666666542 24689999999998763
No 12
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.58 E-value=9.7e-15 Score=136.12 Aligned_cols=131 Identities=17% Similarity=0.135 Sum_probs=80.0
Q ss_pred CCCcceEEEEEEE--eCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCcccccc
Q 046944 193 LGNKGSVSVRFQL--YETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRI 270 (381)
Q Consensus 193 ~GNKG~V~i~~~l--~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi 270 (381)
..+++++.+.+.. .+..|+++|+||.+.. ...|.+++..|.+.+.- +.....+|++||||-
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~-- 175 (267)
T 3g6s_A 113 VCVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNV-- 175 (267)
T ss_dssp SSCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSS--
T ss_pred cCcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCC--
Confidence 3467888888885 5789999999998753 35677777777665420 001234999999994
Q ss_pred CCChHHHHHHHhhhc--HHHHhcc-----cccccCCCCC-----CCcccCeeeeecCcceeeeeccCCC----CcCCCcC
Q 046944 271 SLPEATTRLLVERSE--WNVLLEN-----DQAKNGKKLR-----SPAWCDRIIWCGRGLKQHLYARGES----KLSDHRP 334 (381)
Q Consensus 271 ~~~~~~v~~li~~~~--~~~Ll~~-----DQLdt~~k~R-----~PSWcDRIL~~~~~~~~~~Y~~~~~----~~SDHrP 334 (381)
.+.+.....+.... +...+.. ..-.|+.... .+...||||..+ +++...+..... ..|||+|
T Consensus 176 -~~~~~~~~~l~~~~~~l~d~~~~~~~~~~~~~T~~~~~~~~~~~~~riD~I~~s~-~~~~~~~~v~~~~~~~~~SDH~P 253 (267)
T 3g6s_A 176 -TDASDAYETITTNEFVMKDAYKTAARVTGVDYTFHDFARIPAEDCEKIDFIFVTP-QVLVKSCEIPAEVPEALLSDHNP 253 (267)
T ss_dssp -CTTSHHHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTTTSCGGGCCCCEEEEECT-TSEEEEEEECCCCSSSCCCSBCC
T ss_pred -CCCCHHHHHhhcCCcchhhhHhhhccccCCCCCEeCCCCCCCCCCCcEeEEEeCC-CceEEEEEEecCCCCCCCCCccc
Confidence 44444444443321 3222211 1112332222 125589999954 477777765332 5799999
Q ss_pred eeeeEEEE
Q 046944 335 VKAIFSVE 342 (381)
Q Consensus 335 V~a~f~v~ 342 (381)
|.|.....
T Consensus 254 V~a~~~~~ 261 (267)
T 3g6s_A 254 QLADLELE 261 (267)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 99986654
No 13
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=2.2e-14 Score=136.87 Aligned_cols=133 Identities=18% Similarity=0.129 Sum_probs=76.8
Q ss_pred CCcceEEEEEE--EeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCC-CCCCCCCCCCccccccccEEEeCcccccc
Q 046944 194 GNKGSVSVRFQ--LYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTS-FPRGPLLNLPRNILDHDRVILLGDLNYRI 270 (381)
Q Consensus 194 GNKG~V~i~~~--l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~-f~~~~~~~~p~~i~~~d~vf~~GDlNyRi 270 (381)
-+++++.+.+. ..+..|+++|+||.+.. ...|.+++..|.+.+. +... ....+|++||||.
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~~~~----------~~~pvIl~GDfN~-- 181 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKELGRG----------KNLPAILTGDFNV-- 181 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHTTTT----------SCCCEEEEEECSS--
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHHhcC----------CCCcEEEEEeCCC--
Confidence 36778888888 46789999999998642 3568788877776542 1100 1235999999994
Q ss_pred CCChHHHHHHHhhh-cHHHHhcc-----cccccCCCCC----CCcccCeeeeecCcceeeeeccC---------------
Q 046944 271 SLPEATTRLLVERS-EWNVLLEN-----DQAKNGKKLR----SPAWCDRIIWCGRGLKQHLYARG--------------- 325 (381)
Q Consensus 271 ~~~~~~v~~li~~~-~~~~Ll~~-----DQLdt~~k~R----~PSWcDRIL~~~~~~~~~~Y~~~--------------- 325 (381)
.+.+.....+... .+.+.+.. ....|+.... .+...|+||... +++...|...
T Consensus 182 -~~~~~~~~~l~~~g~l~D~~~~~~~~~~~~~T~~~~~~~~~~~~rID~Il~s~-~~~v~~~~v~~~~~~~~~~~~~~~~ 259 (298)
T 3mpr_A 182 -DQTHQSYDAFVSKGVLCDSYEKCDYRYALNGTFNNFDPNSFTESRIDHIFVSP-SFHVKRYGVLTDTYRSVRENSKKED 259 (298)
T ss_dssp -CTTSHHHHHHHTTSSSEEHHHHCSEEECSSCSBCTTCTTCCCSCCCEEEEECT-TSEEEEEEECCCCEEEECC------
T ss_pred -CCCCHHHHHHhcCCcchhhHhhhcccCCCCCCccCCCCCCCCCceEEEEEeCC-CeeEEEEEEecCccccCCCcccccC
Confidence 4444444443322 12211111 1012332211 344589999854 3444333321
Q ss_pred --------------CCCcCCCcCeeeeEEEEEE
Q 046944 326 --------------ESKLSDHRPVKAIFSVEVR 344 (381)
Q Consensus 326 --------------~~~~SDHrPV~a~f~v~v~ 344 (381)
....|||.||.+.....++
T Consensus 260 ~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~~~ 292 (298)
T 3mpr_A 260 VRDCPEEITIKAYEARTPSDHFPVKVELVFDLE 292 (298)
T ss_dssp ----------CCEEEECSSSBCCEEEEEEECSS
T ss_pred cccchhhhccChhhcccCCCCCcEEEEEecchh
Confidence 0156999999998765543
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.46 E-value=8.8e-14 Score=128.61 Aligned_cols=151 Identities=12% Similarity=0.135 Sum_probs=87.0
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCCCcchhhh
Q 046944 56 VFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTPYQDNKLR 135 (381)
Q Consensus 56 V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~~~~~~~~ 135 (381)
+.|+||||.|..... ..+.++|. ...|||+ ||||+... .... ..+.|...
T Consensus 1 lrv~t~Nv~~~~~~~-~~i~~~i~--~~~~Dii--~LQE~~~~-~~~~---------------~~~~l~~~--------- 50 (268)
T 1ako_A 1 MKFVSFNINGLRARP-HQLEAIVE--KHQPDVI--GLQETKVH-DDMF---------------PLEEVAKL--------- 50 (268)
T ss_dssp CEEEEEECSCGGGCH-HHHHHHHH--HHCCSEE--EEECCCCC-GGGC---------------CHHHHHHT---------
T ss_pred CEEEEEehhHHHHHH-HHHHHHHH--HcCCCEE--EEEeccCC-hhhC---------------CHhHhccC---------
Confidence 368999999864321 12566665 2579976 99998421 1100 01122111
Q ss_pred hcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeeccccc--CCCCcceEEEEEEEeCeEEEEE
Q 046944 136 KLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMG--CLGNKGSVSVRFQLYETSFCFV 213 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g--~~GNKG~V~i~~~l~~t~i~Fv 213 (381)
+|..+....-.+..++||+|.++.. +. .++.+ ....++.+.+.+.+.+..|.++
T Consensus 51 ---------------gy~~~~~~~~~~~G~ailsr~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 106 (268)
T 1ako_A 51 ---------------GYNVFYHGQKGHYGVALLTKETPIA----VR-----RGFPGDDEEAQRRIIMAEIPSLLGNVTVI 106 (268)
T ss_dssp ---------------TCEEEEEEETTEEEEEEEESSCCSE----EE-----ESSTTCCHHHHTTEEEEEEEETTEEEEEE
T ss_pred ---------------CCcEEEeCCCCcceEEEEEecCcce----ee-----eCCCCcccccCCCEEEEEEEcCCCeEEEE
Confidence 3433333333446778888877532 11 12211 1235788999999988899999
Q ss_pred eeccCCCCCCC---ChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCcccccc
Q 046944 214 CSHLASGGKEG---DEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRI 270 (381)
Q Consensus 214 n~HL~a~~~~~---~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi 270 (381)
|+||+++.... ....|.+++..|.+.+.-. ......+|++||||...
T Consensus 107 ~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 107 NGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp EEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH----------CCTTSCEEEEEECCCCC
T ss_pred EEEecCCCCcccchhHHHHHHHHHHHHHHHHHh----------hhCCCCEEEEeECCCCC
Confidence 99999876421 1234666666665543200 00123599999999643
No 15
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.41 E-value=7.4e-13 Score=125.23 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=48.0
Q ss_pred CCCcceEEEEEEEeCeEEEEEeeccCCCCCC----CChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCcccc
Q 046944 193 LGNKGSVSVRFQLYETSFCFVCSHLASGGKE----GDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNY 268 (381)
Q Consensus 193 ~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~----~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNy 268 (381)
..++|++.+.+.+.+..|.++|+||.+.... .....|.+++..|.+.+.-.. ......+|++||||.
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~---------~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKN---------IPKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHT---------CCTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhC---------CCCCCeEEEEeeCCC
Confidence 4578999999999999999999999987431 134567888877766542000 011235999999995
Q ss_pred c
Q 046944 269 R 269 (381)
Q Consensus 269 R 269 (381)
.
T Consensus 199 ~ 199 (301)
T 1zwx_A 199 N 199 (301)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.39 E-value=2.1e-12 Score=124.92 Aligned_cols=94 Identities=21% Similarity=0.255 Sum_probs=60.6
Q ss_pred EEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEeCeEEEEEeeccCCCCCC----CChhHHHHHHHHHHh
Q 046944 163 IFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGKE----GDEKYRNSDVAEILS 238 (381)
Q Consensus 163 i~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~----~~~~~Rn~d~~~I~~ 238 (381)
-.++++.|.++... ..+... .++|. ....+||.+.+.+.+.+..|.++|+||.+.... .....|.+++..|.+
T Consensus 120 ~G~~ilSr~Pi~~~-~~~~~~-~~~~~-d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~ 196 (317)
T 3i41_A 120 GGVAIVSKYPIKEK-IQHVFK-SGCGF-DNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISD 196 (317)
T ss_dssp CCCEEEESSCEEEE-EEEECS-CCCSS-GGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHH
T ss_pred CccEEEeCCCCccc-eeEECC-CCCCc-ccccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHH
Confidence 45677888776422 111111 11232 236789999999999999999999999986521 135678888888776
Q ss_pred hCCCCCCCCCCCCccccccccEEEeCcccc
Q 046944 239 RTSFPRGPLLNLPRNILDHDRVILLGDLNY 268 (381)
Q Consensus 239 ~~~f~~~~~~~~p~~i~~~d~vf~~GDlNy 268 (381)
.+.-.. +.....||++||||-
T Consensus 197 ~i~~~~---------~~~~~pvIl~GDfN~ 217 (317)
T 3i41_A 197 FVKKKN---------IPKDETVYIGGDLNV 217 (317)
T ss_dssp HHHHHT---------CCTTSCEEEEEECCC
T ss_pred HHHHhc---------cCCCCeEEEEeECCC
Confidence 542100 011235999999995
No 17
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.37 E-value=1.4e-12 Score=123.51 Aligned_cols=69 Identities=22% Similarity=0.291 Sum_probs=47.5
Q ss_pred CCCcceEEEEEEEeCeEEEEEeeccCCCCCC----CChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCcccc
Q 046944 193 LGNKGSVSVRFQLYETSFCFVCSHLASGGKE----GDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNY 268 (381)
Q Consensus 193 ~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~----~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNy 268 (381)
...+|++.+.+.+.+..+.++|+||.+.... .....|..++..|.+.+.-.. +.....+|++||||.
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~---------~~~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKN---------IPNNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHT---------CCTTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------CCCCCEEEEEeeCCC
Confidence 4578999999999999999999999987421 134568888877765432000 001235999999996
Q ss_pred cc
Q 046944 269 RI 270 (381)
Q Consensus 269 Ri 270 (381)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.35 E-value=2.4e-12 Score=118.15 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=75.5
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCCCcchhhh
Q 046944 56 VFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTPYQDNKLR 135 (381)
Q Consensus 56 V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~~~~~~~~ 135 (381)
+.|+||||.|..... ..+.++|. ...|||+ ||||+.... ... ..+.|..
T Consensus 1 lrv~t~Nv~~~~~~~-~~i~~~i~--~~~~DIv--~LQE~~~~~-~~~---------------~~~~~~~---------- 49 (256)
T 2jc4_A 1 MKITTWNVNSLNVRL-PQVQNLLA--DNPPDIL--VLQELKLDQ-DKF---------------PAAALQM---------- 49 (256)
T ss_dssp CEEEEEECSCHHHHH-HHHHHHHH--SSCCSEE--EEECCCSCG-GGS---------------CHHHHHT----------
T ss_pred CEEEEEEcCCcHHHH-HHHHHHHH--hcCCCEE--EEEeeccch-hcC---------------CHhHHhh----------
Confidence 358999999754221 12566665 3689987 999984321 000 0112221
Q ss_pred hcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccC-C-CCcceEEEEEEEeCeEEEEE
Q 046944 136 KLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGC-L-GNKGSVSVRFQLYETSFCFV 213 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~-~-GNKG~V~i~~~l~~t~i~Fv 213 (381)
.+|..+....-.+-.++|++|.++. .+.. ++.+. . ...+.+. +.+. .+.++
T Consensus 50 --------------~gy~~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~~~~~--~~~~--~~~v~ 102 (256)
T 2jc4_A 50 --------------MGWHCVWSGQKTYNGVAIVSRSVPQ----DVHF-----GLPALPDDPQRRVIA--ATVS--GVRVI 102 (256)
T ss_dssp --------------TTCEEEEECCSSSCCEEEEESSCCE----EEEE-----SCTTSTTCCSCCEEE--EEET--TEEEE
T ss_pred --------------cCCeEEECCCCcceEEEEEECCChH----Hhee-----cCCCCccCCcCcEEE--EEeC--CEEEE
Confidence 1354443322233467788887643 1111 22111 1 1223333 4443 68999
Q ss_pred eeccCCCCCCCC--hhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCcccccc
Q 046944 214 CSHLASGGKEGD--EKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRI 270 (381)
Q Consensus 214 n~HL~a~~~~~~--~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi 270 (381)
|+|+++....+. ...|.+.+..+.+.+.- .+.....+|++||||...
T Consensus 103 ~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~----------~~~~~~~~il~GDFN~~~ 151 (256)
T 2jc4_A 103 NVYCVNGEALDSPKFKYKEQWFAALTEFVRD----------EMTRHGKLVLLGDFNIAP 151 (256)
T ss_dssp EEECCCCCSTTSHHHHHHHHHHHHHHHHHHH----------HHTTCSSEEEEEECCCCC
T ss_pred EEEecCCCCCCcHhHHHHHHHHHHHHHHHHH----------HhcCCCCEEEEeECCCCC
Confidence 999998754221 22344455555433210 000123599999999744
No 19
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.29 E-value=1.3e-11 Score=111.69 Aligned_cols=212 Identities=12% Similarity=0.071 Sum_probs=105.4
Q ss_pred EEEEEEeeCCCCCCCCC-CccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCCCcchh
Q 046944 55 KVFASTWNVGGVAPTED-IDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTPYQDNK 133 (381)
Q Consensus 55 ~V~V~TWNv~g~~p~~~-~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~~~~~~ 133 (381)
.+.|+||||+|...... ..+.++|. ...|||+ ||||+- .....+ . .+. . .
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~--~~~~DIv--~LQE~~-~~~~~~----------------~-~l~-~-~----- 57 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIK--SQDPSVC--CIQETH-LTCRDT----------------H-RLK-I-K----- 57 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHH--HHCCSEE--EEECCC-CCTTSG----------------G-GCC-C-T-----
T ss_pred cceEEEEecccCCchhhHHHHHHHHH--HcCCCEE--EEeccc-CCCCCc----------------h-hHh-h-C-----
Confidence 57899999998654321 12566665 2579987 999983 211000 0 010 0 0
Q ss_pred hhhcccCCCCCCCCCCCCeEEEEEeeeecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEeCeEEEEE
Q 046944 134 LRKLQSISPDNDVQISPGFRCIICKQMVGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFV 213 (381)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~Y~~v~s~~mvGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~~t~i~Fv 213 (381)
...|.......-.+-.++|++|.++...+..+ .... ..-.+.+.+.+.+..+.++
T Consensus 58 ---------------~y~~~~~~~~~~~~~Gvail~r~~~~~~~~~~-----~~~~-----~~r~i~~~~~~~~~~~~v~ 112 (238)
T 1vyb_A 58 ---------------GWRKIYQANGKQKKAGVAILVSDKTDFKPTKI-----KRDK-----EGHYIMVKGSIQQEELTIL 112 (238)
T ss_dssp ---------------TCCEEEEECCSSSSCCEEEEECTTCCCEEEEE-----EECT-----TSSEEEEEEEETTEEEEEE
T ss_pred ---------------CCCeEEEccCCCCCceEEEEEeCCCCccccce-----eEcC-----CCcEEEEEEEeCCCcEEEE
Confidence 01222222111122367788888753222221 1111 1225677788888999999
Q ss_pred eeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCC-C-------hH---HHHHHHh
Q 046944 214 CSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISL-P-------EA---TTRLLVE 282 (381)
Q Consensus 214 n~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~-~-------~~---~v~~li~ 282 (381)
|+|++++.. . | .+.++++.+.-. ....+|++||||...+. . .. ....++.
T Consensus 113 ~~y~p~~~~----~-~--~~~~l~~~l~~~------------~~~~~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T 1vyb_A 113 NIYAPNTGA----P-R--FIKQVLSDLQRD------------LDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALH 173 (238)
T ss_dssp EEECCSSSH----H-H--HHHHHHHHTTTT------------CCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHH
T ss_pred EEecCCCCc----H-H--HHHHHHHHHHhc------------cCCCEEEEccCCCCCCccccCCCCCCcHHHHHHHHHHh
Confidence 999988642 2 2 234455543210 01359999999973321 0 00 1122221
Q ss_pred hhcHHHHh---cccc-cccCCCCCC--CcccCeeeeecCcc-eeeeeccCCCCcCCCcCeeeeE
Q 046944 283 RSEWNVLL---ENDQ-AKNGKKLRS--PAWCDRIIWCGRGL-KQHLYARGESKLSDHRPVKAIF 339 (381)
Q Consensus 283 ~~~~~~Ll---~~DQ-Ldt~~k~R~--PSWcDRIL~~~~~~-~~~~Y~~~~~~~SDHrPV~a~f 339 (381)
...+.+.+ ..+. -.|+...+. .+..|+||....-. ....+...+...|||+||.+.|
T Consensus 174 ~~~l~d~~~~~~~~~~~~T~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~~SDH~pv~~~l 237 (238)
T 1vyb_A 174 QADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKRTEIITNYLSDHSAIKLEL 237 (238)
T ss_dssp HTTEEEHHHHHCTTCCCCSEEETTTTEEECCEEEEEEGGGGGGEEEEEEECCSSSSSCEEEEEE
T ss_pred hCCCEEhhHhhCCCCCceeEEcCCCCcccceEEEEeCHHHHhhhhhceeecCCCCCcccEEEEe
Confidence 11111111 0000 011111111 22489999864321 1333333356889999999886
No 20
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.23 E-value=3.8e-12 Score=116.95 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=25.6
Q ss_pred cccCeeeeecCcce--eeeeccC-CCCcCCCcCeeeeEEE
Q 046944 305 AWCDRIIWCGRGLK--QHLYARG-ESKLSDHRPVKAIFSV 341 (381)
Q Consensus 305 SWcDRIL~~~~~~~--~~~Y~~~-~~~~SDHrPV~a~f~v 341 (381)
...|+||... ++. ...+... +...|||+||.+.|.+
T Consensus 218 ~rID~i~~s~-~~~~~~~~~~v~~~~~~SDH~pv~~~l~~ 256 (259)
T 2jc5_A 218 WRIDYQMVTP-ELAAKAVSAHVYKDEKFSDHAPLVVEYDY 256 (259)
T ss_dssp ECCEEEEECH-HHHTTEEEEEECCSSCCSSBCCEEEEESC
T ss_pred eEEEEEEECH-HHHhHHhheeecCCCCCCCcccEEEEEec
Confidence 4689999854 333 4444443 5789999999999864
No 21
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.21 E-value=1.6e-10 Score=106.26 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=25.4
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeee
Q 046944 56 VFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIV 96 (381)
Q Consensus 56 V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv 96 (381)
+.|+||||+|...... .+.++|. ...|||+ ||||+-
T Consensus 2 lrv~t~Nv~g~~~~~~-~i~~~i~--~~~~Dii--~lQE~~ 37 (257)
T 2voa_A 2 LKIATFNVNSIRSRLH-IVIPWLK--ENKPDIL--CMQETK 37 (257)
T ss_dssp EEEEEEECSCGGGTHH-HHHHHHH--HHCCSEE--EEECCC
T ss_pred eEEEEEecCChHHHHH-HHHHHHh--hcCCCEE--EEEEee
Confidence 5789999998653321 2556665 3579987 999984
No 22
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.17 E-value=4.2e-11 Score=112.39 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=27.8
Q ss_pred cceEEEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeee
Q 046944 52 QNYKVFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIV 96 (381)
Q Consensus 52 ~~l~V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv 96 (381)
..-.+.|+||||.|........+.++|. ...|||+ ||||+.
T Consensus 25 ~~~~l~v~t~Ni~~~~~~~~~~i~~~i~--~~~~DIi--~LQE~~ 65 (285)
T 2o3h_A 25 KPATLKIASWNVDGLRAWIKKKGLDWVK--EEAPDIL--CLQETK 65 (285)
T ss_dssp CBCCEEEEEEECSSHHHHHHTTHHHHHH--HHCCSEE--EEECCC
T ss_pred CccceEEEEEecccChhhhhhhHHHHHH--hcCCCEE--EEEEee
Confidence 3446889999999754221112566665 3579977 999984
No 23
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.16 E-value=2.4e-11 Score=117.09 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=28.3
Q ss_pred cceEEEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEeee
Q 046944 52 QNYKVFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEIV 96 (381)
Q Consensus 52 ~~l~V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEiv 96 (381)
..-.+.|+||||.|........+.++|. ...|||+ ||||+.
T Consensus 58 ~~~~lrv~t~Nv~g~~~~~~~~i~~~i~--~~~~DIi--~LQE~~ 98 (318)
T 1hd7_A 58 KPATLKICSWNVDGLRAWIKKKGLDWVK--EEAPDIL--CLQETK 98 (318)
T ss_dssp CBCCEEEEEEECSSHHHHHHTTHHHHHH--HHCCSEE--EEECCC
T ss_pred CCCceEEEEEecCcchhhhhhhHHHHHH--hhCCCEE--EEEEcc
Confidence 4456899999999764221112666775 3679987 999984
No 24
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.16 E-value=6e-11 Score=109.43 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=71.3
Q ss_pred CcceEEEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCC-C
Q 046944 195 NKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISL-P 273 (381)
Q Consensus 195 NKG~V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~-~ 273 (381)
..|.+.+.+...+..+.++|+|++.+.. ...+.+++..+++.+ . ...+|++||||--... .
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~--~-------------~~~~Ii~GDfN~~~~~~~ 163 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM--G-------------PKRLIFGGDANAKSTWWG 163 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT--C-------------SSSEEEEEECCCCCGGGT
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh--C-------------CCcEEEEeccccCcccCC
Confidence 5677888888888899999999998753 234555666666542 1 1249999999954321 0
Q ss_pred ----hHH---HHHHHhhhcHHHHhcccccccCC----CCCCCcccCeeeeecCcc-eeeeeccC-CCCcCCCcCeeeeEE
Q 046944 274 ----EAT---TRLLVERSEWNVLLENDQAKNGK----KLRSPAWCDRIIWCGRGL-KQHLYARG-ESKLSDHRPVKAIFS 340 (381)
Q Consensus 274 ----~~~---v~~li~~~~~~~Ll~~DQLdt~~----k~R~PSWcDRIL~~~~~~-~~~~Y~~~-~~~~SDHrPV~a~f~ 340 (381)
... ..+++....+. ++..+...|+. ..+..+.+|+||....-. ....+... +...|||.||.+.|.
T Consensus 164 ~~~~~~~~~~l~~~~~~~~l~-~~~~~~~~T~~~~~~~~~~~~rID~i~~s~~~~~~v~~~~v~~~~~~SDH~Pv~~~l~ 242 (245)
T 1wdu_A 164 SKEDDARGDQLMGTLGELGLH-ILNEGDVPTFDTIRGGKRYQSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVFNIR 242 (245)
T ss_dssp CSSCCHHHHHHHHHHHHHTCE-ECCCSCCCSEEC-----CCEECCEEEEECGGGBTTEEEEEECTTSSSSSBCCEEEEEC
T ss_pred CCCcCcchHHHHHHHHHCCcE-EecCCCCCcEECCCCCCCCCCEEEEEEeChHHHhhccceEEcCCCCCCCcccEEEEEE
Confidence 011 11111111000 00001112221 122356789999854211 23333332 478999999998875
Q ss_pred E
Q 046944 341 V 341 (381)
Q Consensus 341 v 341 (381)
+
T Consensus 243 l 243 (245)
T 1wdu_A 243 L 243 (245)
T ss_dssp C
T ss_pred e
Confidence 3
No 25
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.10 E-value=1.5e-11 Score=114.98 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=79.2
Q ss_pred EEEEEeeCCCCCCCCC-C-c----cccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhccCCC
Q 046944 56 VFASTWNVGGVAPTED-I-D----MEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNKKTPY 129 (381)
Q Consensus 56 V~V~TWNv~g~~p~~~-~-d----L~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~~~~~ 129 (381)
+.|+||||.+..+... . . |...+ ..|||+ ||||+..... ... ..+.+.|+...
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~----~~~DIv--~LQEv~~~~~------------~~~-~~l~~~L~~~~-- 59 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIV----RRYDIV--LIQEVRDSHL------------VAV-GKLLDYLNQDD-- 59 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHH----TTCSEE--EEEEECCTTS------------HHH-HHHHHHHTSSS--
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHh----ccCCEE--EEEEEEcCch------------hHH-HHHHHHHHhcc--
Confidence 4689999986432210 0 0 22222 268987 9999953210 112 23445665421
Q ss_pred cchhhhhcccCCCCCCCCCCCCeEEEEEeee----ecEEEEEEEecCCCCccccceeeee--ecccccCCCCcceEEEEE
Q 046944 130 QDNKLRKLQSISPDNDVQISPGFRCIICKQM----VGIFISVWIRSDLRPYIRHPSVSCV--GCGIMGCLGNKGSVSVRF 203 (381)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~m----vGi~L~Vfvr~~l~~~I~~v~~s~v--~~G~~g~~GNKG~V~i~~ 203 (381)
...|..+.+... .++...++.|.+....+.....+.. ..|-. .+ ....+.+.+
T Consensus 60 -------------------~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~~~~~~~~~~~~-~~-~R~p~~~~~ 118 (260)
T 2a40_B 60 -------------------PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGND-SF-SREPAVVKF 118 (260)
T ss_dssp -------------------TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHH-HC-SSCCEEEEE
T ss_pred -------------------CCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCceeccCCCcCCCCC-ce-eeCCEEEEE
Confidence 124655554433 2456677777764322222111100 00100 11 256677777
Q ss_pred EEe---CeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccc
Q 046944 204 QLY---ETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYR 269 (381)
Q Consensus 204 ~l~---~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyR 269 (381)
... +..|.++|+||.+... .++.+.+.++++.+. . ......+|++||||-.
T Consensus 119 ~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~--~---------~~~~~~vil~GDfN~~ 172 (260)
T 2a40_B 119 SSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ--Q---------KWHLNDVMLMGDFNAD 172 (260)
T ss_dssp ECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH--H---------HHCCCCEEEEEECCCS
T ss_pred EeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH--H---------hCCCCCEEEEecCCCC
Confidence 765 6799999999997532 112233334333211 0 0011359999999964
No 26
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.09 E-value=2.9e-10 Score=116.49 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=27.2
Q ss_pred eEEEEEEeeCCCCCCCC--C-CccccccCCCCCCCcEEEEEEEeee
Q 046944 54 YKVFASTWNVGGVAPTE--D-IDMEDWLHTPNTLCDIYVLGFQEIV 96 (381)
Q Consensus 54 l~V~V~TWNv~g~~p~~--~-~dL~~wl~~~~~~~DIyViG~QEiv 96 (381)
-.+.|+||||+|..... . ..|.+||.. ..|||+ ||||+-
T Consensus 148 ~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pDIV--cLQEtk 189 (467)
T 2j63_A 148 RMYKFITWNVAGLRGLLKKNASALRAFMEA--EKPDVL--CLQETK 189 (467)
T ss_dssp TEEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCSEE--EEECCC
T ss_pred CCeEEEEEEcCCCcccccccHHHHHHHHHH--cCCCEE--EEEecc
Confidence 46899999999853111 0 126778763 579987 999983
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.02 E-value=3.3e-09 Score=100.72 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=74.1
Q ss_pred EEEEEEEecCCCCccccceeeeeecccccCCCCcceEEEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCC
Q 046944 163 IFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSF 242 (381)
Q Consensus 163 i~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f 242 (381)
..++|++|.... ++..-....| ..-..|++.|+ +.+ +.|+++||.+... .++.+.+..|.+.+.
T Consensus 96 ~g~AIlSR~~~~----~v~~l~~~~~---~~~~R~~l~i~--i~g--~~f~s~Hl~~~~~----~ea~~~v~~I~~~~~- 159 (261)
T 1sr4_B 96 VNLAIVSRRQAD----EAFIVHSDSS---VLQSRPAVGIR--IGT--DVFFTVHALATGG----SDAVSLIRNIFTTFN- 159 (261)
T ss_dssp SCEEEEESSCCS----EEEEECCCCC---SSCCCCEEEEE--ETT--EEEEEEECCTTTT----TTHHHHHHHHHHHHH-
T ss_pred cceEEEEccchh----ceEEcCCCCC---CCcCcceEEEE--ECC--eEEEEeCCCCCCC----chHHHHHHHHHHHHH-
Confidence 367788887442 2211111111 12367887774 666 9999999999853 225556666665321
Q ss_pred CCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHhhhcHHHHhccccc-ccCCCCCCCcccCeeeeecCc-----
Q 046944 243 PRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVERSEWNVLLENDQA-KNGKKLRSPAWCDRIIWCGRG----- 316 (381)
Q Consensus 243 ~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~~~~~~~Ll~~DQL-dt~~k~R~PSWcDRIL~~~~~----- 316 (381)
.. ...|. ..+...+++||||- . +......+.......- ..+.+ .+......-.=.|||+.....
T Consensus 160 -~~--~~~~~--~~~~~~ii~GDFN~---~-p~~~~~~L~~~~~~~~-~~~~~~p~~~T~~s~~~LDyi~~~~~~~~~~~ 229 (261)
T 1sr4_B 160 -SS--SSPPE--RRVYSWMVVGDFNR---A-PANLEVALRQEPAVSE-NTIIIAPTEPTHRSGNILDYAILHDAHLPRRE 229 (261)
T ss_dssp -C-----CGG--GGGCEEEEEEECSS---C-HHHHHHHHTTSHHHHH-TCEEECCSSCSBTTSCCCEEEEEECTTSCTTC
T ss_pred -hc--ccCCc--ccCCcEEEEeeCCC---C-hhHHHHHhhccccccc-eeEecCCCcCcCCCCCcccEEEecCCCccccc
Confidence 10 00011 02246999999992 3 3334444432100000 00001 111111111226999986433
Q ss_pred -----ce-eeeeccC-CCCcCCCcCeee
Q 046944 317 -----LK-QHLYARG-ESKLSDHRPVKA 337 (381)
Q Consensus 317 -----~~-~~~Y~~~-~~~~SDHrPV~a 337 (381)
+. ...+... .-..|||+||.+
T Consensus 230 ~~~~~~~a~~~~~~~~~~~aSDH~PV~~ 257 (261)
T 1sr4_B 230 QARERIGASLMLNQLRSQITSDHFPVSF 257 (261)
T ss_dssp GGGCCEEEEECGGGCSSCCSSSBCCEEE
T ss_pred ccchhhhHHHhhhhhhccccCCccceee
Confidence 11 3344443 445699999976
No 28
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.02 E-value=4e-10 Score=104.92 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=26.4
Q ss_pred EEEEEEeeCCCCCCCCCCccccccCCCCCCCcEEEEEEEee
Q 046944 55 KVFASTWNVGGVAPTEDIDMEDWLHTPNTLCDIYVLGFQEI 95 (381)
Q Consensus 55 ~V~V~TWNv~g~~p~~~~dL~~wl~~~~~~~DIyViG~QEi 95 (381)
.+.|+||||+|........+.+||. ...|||+ +|||.
T Consensus 3 ~l~i~s~Nv~g~~~~~~~~l~~~i~--~~~~DIv--~LQEt 39 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRKGFLKWFM--EEKPDIL--CLQEI 39 (265)
T ss_dssp EEEEEEEECSCHHHHHHHTHHHHHH--HHCCSEE--EEECC
T ss_pred ccEEEEEEcCCchhhhhhhHHHHHH--hcCCCEE--EEEec
Confidence 4679999999864322113667775 3689988 99998
No 29
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=98.91 E-value=1e-08 Score=103.01 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=42.9
Q ss_pred eEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCC-CCCCCCCCCCcc--ccccccEEEeCccccccCCChHHHHHHHhh
Q 046944 208 TSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTS-FPRGPLLNLPRN--ILDHDRVILLGDLNYRISLPEATTRLLVER 283 (381)
Q Consensus 208 t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~-f~~~~~~~~p~~--i~~~d~vf~~GDlNyRi~~~~~~v~~li~~ 283 (381)
..|+++|+||..+.. ....|..|...|++.+. +........+.. -...-.+|+||||| ..|.+.+.+++..
T Consensus 195 ~~l~V~nTHL~~~p~--~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFN---s~P~s~vy~~L~~ 268 (398)
T 3ngq_A 195 QLLIVANAHMHWDPE--YSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLN---SLPDSGVVEYLSN 268 (398)
T ss_dssp CEEEEEEEECCCCTT--CHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECS---CCTTSHHHHHHHH
T ss_pred cEEEEEEeCcCCCCC--CHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCC---CCCCCHHHHHHhc
Confidence 569999999999754 34568888877776542 211000000000 00122599999999 5787888887764
No 30
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=98.88 E-value=1.6e-09 Score=101.01 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=64.2
Q ss_pred CcceEEEEEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCCh
Q 046944 195 NKGSVSVRFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPE 274 (381)
Q Consensus 195 NKG~V~i~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~ 274 (381)
..|++.+.+.. ..+.++|+|++.+.. .....+.+..+...+. . ..+|++||||---....
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~---~~~~~~~l~~l~~~~~--~-------------~~~Ii~GDfN~~~~~w~ 136 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDP---IDPYLHRLGNILDRLR--G-------------ARVVICADTNAHSPLWH 136 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSC---SHHHHHHHHHHHHHTT--T-------------SCEEEEEECCCCCGGGT
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCc---hhHHHHHHHHHHHhcC--C-------------CcEEEEEeccccccccc
Confidence 46776766543 568899999998864 2334455555554321 0 24999999996432110
Q ss_pred --H-----------HHHHHHhhhcHHHHhc----cc--ccccCCCCCCCcccCeeeeecCcceeeeeccCCCCcCCCcCe
Q 046944 275 --A-----------TTRLLVERSEWNVLLE----ND--QAKNGKKLRSPAWCDRIIWCGRGLKQHLYARGESKLSDHRPV 335 (381)
Q Consensus 275 --~-----------~v~~li~~~~~~~Ll~----~D--QLdt~~k~R~PSWcDRIL~~~~~~~~~~Y~~~~~~~SDHrPV 335 (381)
. ...+.+. .|-..+. +. ...|+...|..+..|+||-.. .+........+...|||.||
T Consensus 137 ~~~~~~~~~~~~r~~~~~~l~--~~~d~~~l~~~~~~~~~~T~~s~~~~~rID~~l~s~-~l~~~~~~i~~~~~SDH~Pv 213 (240)
T 2ei9_A 137 SLPRHYVGRGQEVADRRAKME--DFIGARRLVVHNADGHLPTFSTANGESYVDVTLSTR-GVRVSEWRVTNESSSDHRLI 213 (240)
T ss_dssp CCHHHHSSSCHHHHHHHHHHH--HHHHHTTCEECCCTTCCCSEEETTEEECCEEEEECT-TCCEEEEEECSCCSSSBCCE
T ss_pred CCCCCCCCcchhhHHHHHHHH--HHHHhcCCEecCCCCCCceEeCCCCceEEEEEEecC-ccccCCeEECCCCCCCcccE
Confidence 0 0011110 1111111 00 001211122234578888743 33322222224789999999
Q ss_pred eeeEEEEEEecc
Q 046944 336 KAIFSVEVRVLR 347 (381)
Q Consensus 336 ~a~f~v~v~~~~ 347 (381)
.+.|........
T Consensus 214 ~~~l~~~~~~~~ 225 (240)
T 2ei9_A 214 VFGVGGGTTGER 225 (240)
T ss_dssp EEEEEC------
T ss_pred EEEECCCCCCCC
Confidence 887766544433
No 31
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=98.82 E-value=3.1e-09 Score=100.42 Aligned_cols=233 Identities=17% Similarity=0.129 Sum_probs=111.0
Q ss_pred CccceEEEEEEeeCCCCCCCCC----CccccccCCCCCCCcEEEEEEEeeecCcccccccCCCchhhHHHHHHHHHHHhc
Q 046944 50 ETQNYKVFASTWNVGGVAPTED----IDMEDWLHTPNTLCDIYVLGFQEIVPLRASNVLGSENNKIFTKWNSLIREALNK 125 (381)
Q Consensus 50 ~~~~l~V~V~TWNv~g~~p~~~----~dL~~wl~~~~~~~DIyViG~QEiv~l~a~~v~~~~~~~~~~~W~~~i~~~L~~ 125 (381)
.+.-..+-|+|||+.|..+..+ .++...|.. ..++||+ ++||+.-+..+++.... .....+.. +.+.+-.
T Consensus 10 ~~~~~~~kV~TwNiqgs~~~teskw~~~v~~lI~~-~~~~DIv--aLQEag~~p~sa~~t~R--~~~~~g~~-v~E~~w~ 83 (262)
T 2f1n_A 10 GTDLTDFRVATWNLQGASATTESKWNINVRQLISG-ENAVDIL--AVQEAGSPPSTAVDTGR--VIPSPGIP-VRELIWN 83 (262)
T ss_dssp CCCGGGCCEEEEEEEECTTSCHHHHHTHHHHHHSS-TTCCSEE--EEEEECSCCTTCEECCC--CCCCSSCC-CEEEEEE
T ss_pred ccccceeEEEEEEcCCCCCCCcccccccHHHHHcc-CCCCCEE--EEeecCCcCcccccccc--cccCCCcC-HHHHHHH
Confidence 3445567799999999765322 346666653 2469988 99999865433321100 00000000 0000000
Q ss_pred cCCCcchhhhhcccCCCCCCCCCCCCeEEEEEeee----ecEEEEEEEecCCCCccccceeeeeecccccCCCCcceEEE
Q 046944 126 KTPYQDNKLRKLQSISPDNDVQISPGFRCIICKQM----VGIFISVWIRSDLRPYIRHPSVSCVGCGIMGCLGNKGSVSV 201 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~m----vGi~L~Vfvr~~l~~~I~~v~~s~v~~G~~g~~GNKG~V~i 201 (381)
.. . ...++++.+....+ .-..++|..|.... ++-+-...+ .+....++|
T Consensus 84 lG----------------t--~srp~~~yiY~~~~D~~~~r~nlAIlSr~~ad----ev~vLp~~~-----~~~Rp~lgi 136 (262)
T 2f1n_A 84 LS----------------T--NSRPQQVYIYFSAVDALGGRVNLALVSNRRAD----EVFVLSPVR-----QGGRPLLGI 136 (262)
T ss_dssp CC----------------S--SSSSCEEEEEEECSCSSSCSSCEEEEESSCCS----EEEEECCSS-----TTCCCEEEE
T ss_pred hC----------------C--CCCCceEEEEEeeccCCCCceeeEEEEccccc----ceEECCCCC-----CCCCceEEE
Confidence 00 0 00112222222211 11456666676543 221111111 226888888
Q ss_pred EEEEeCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCCCCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHH
Q 046944 202 RFQLYETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTSFPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLV 281 (381)
Q Consensus 202 ~~~l~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li 281 (381)
++ + .+.|.++|+.+... ..|.+.+..|...+. . .|..+...-.++++||||- .|.+....+.
T Consensus 137 ri---~-~~~ff~tHa~a~~g----~da~a~v~~I~~~~~--~-----~~~~~~~~~pwii~GDFNr---~P~sl~~~l~ 198 (262)
T 2f1n_A 137 RI---G-NDAFFTAHAIAMRN----NDAPALVEEVYNFFR--D-----SRDPVHQALNWMILGDFNR---EPADLEMNLT 198 (262)
T ss_dssp EE---T-TEEEEEEECCSSSS----CSHHHHHHHHHHHHH--T-----CSSHHHHTCEEEEEEECSS---CHHHHHTTSC
T ss_pred EE---C-CEEEEEEEecCCCC----ccHHHHHHHHHHHHh--c-----CcccccCCCcEEEEecCCC---CCcchhhhhh
Confidence 87 2 37899999999843 237777888876532 1 1110000024999999993 4444333221
Q ss_pred hhhcHHHHhcccccccCCCCCCCcccCeeeeec-Ccce------eeeeccC-CCCcCCCcCee
Q 046944 282 ERSEWNVLLENDQAKNGKKLRSPAWCDRIIWCG-RGLK------QHLYARG-ESKLSDHRPVK 336 (381)
Q Consensus 282 ~~~~~~~Ll~~DQLdt~~k~R~PSWcDRIL~~~-~~~~------~~~Y~~~-~~~~SDHrPV~ 336 (381)
. . +..-+. +.-......+.=.=.|+++... ..+. .+.+... +-..|||+||.
T Consensus 199 ~-~-~~~~~~-~~~p~~~T~~s~~~LDY~~~~~~~~~~~~~~~a~~~~~~l~~~~aSDH~PV~ 258 (262)
T 2f1n_A 199 V-P-VRRASE-IISPAAATQTSQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPVG 258 (262)
T ss_dssp H-H-HHHTEE-EECCSSCSBTTSCCCEEEEEEESSCCCCCCCEEEETTTTSCCCCSCSBCCEE
T ss_pred c-c-cccceE-EcCCCCCCCCCCCeEeEEEEcCCccccccchhhhhhhhhhccCcCCCcccee
Confidence 1 1 110010 1001111111112279999763 2222 3344443 34469999995
No 32
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.63 E-value=3.4e-09 Score=113.78 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=0.0
Q ss_pred eCeEEEEEeeccCCCCCCCChhHHHHHHHHHHhhCC-CCCCCCCCCCccccccccEEEeCccccccCCChHHHHHHHh
Q 046944 206 YETSFCFVCSHLASGGKEGDEKYRNSDVAEILSRTS-FPRGPLLNLPRNILDHDRVILLGDLNYRISLPEATTRLLVE 282 (381)
Q Consensus 206 ~~t~i~Fvn~HL~a~~~~~~~~~Rn~d~~~I~~~~~-f~~~~~~~~p~~i~~~d~vf~~GDlNyRi~~~~~~v~~li~ 282 (381)
.+..|+++|+||.+.... ...|..+...+++.+. +........+..-.....||+||||| +.|.+.+..++.
T Consensus 545 ~g~~l~V~ntHL~~~p~~--~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFN---s~P~s~~~~~l~ 617 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKF--NDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFN---SYINSAVYELIN 617 (727)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCC--CchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccC---CCCCCcceEeee
Confidence 467899999999986432 2346666666655432 11000000000001123599999999 455555555553
No 33
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=25.18 E-value=13 Score=37.80 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.4
Q ss_pred cccccEEEeCcccccc
Q 046944 255 LDHDRVILLGDLNYRI 270 (381)
Q Consensus 255 ~~~d~vf~~GDlNyRi 270 (381)
.+.+.||+=||||||=
T Consensus 375 ~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 375 QKSNLVIFKGDLNYRK 390 (471)
T ss_dssp TTCSEEEEEHHHHHHH
T ss_pred hhCcEEEEecchhhhh
Confidence 3578999999999963
No 34
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=26.68 E-value=20 Score=21.16 Aligned_cols=10 Identities=30% Similarity=0.797 Sum_probs=7.7
Q ss_pred CCCcccCeee
Q 046944 302 RSPAWCDRII 311 (381)
Q Consensus 302 R~PSWcDRIL 311 (381)
--|+|.||+=
T Consensus 7 cr~nWs~RV~ 16 (26)
T 2yka_B 7 CKTSWADRVR 16 (26)
Confidence 4589999983
Done!