Your job contains 1 sequence.
>046946
PDWNPKVEGLPFLFPPFPSFSFSFSFPPPNGERHPPKQAAITVSLILLIQTFSVFIYLFS
ISFSCAFHLLSHSRCIRFCCIMDASKRNFFKKRPNNQFKRKGVVGIKKGNWSNSSREQSF
GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSS
PTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTI
TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV
AKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLH
GMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAGKIGGVIGKGGFNV
KQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTI
TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS
EHLISAHGTYQSFMTSGQSMKVQPSSYQNINPQQSSCQTMSSHQSSYQNMNTQQSPYHRV
NAQQSPYQNINPQQSSYPMHTHQGAGTNPHITPTQSSYYSSSAQQGTYPY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046946
(650 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 434 2.8e-67 3
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 424 4.2e-59 2
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 529 6.5e-51 1
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 481 2.3e-50 2
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 467 2.4e-44 1
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 317 1.2e-29 2
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 241 2.7e-23 2
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 173 1.1e-22 3
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 262 9.2e-22 1
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 159 5.1e-20 3
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 148 8.4e-19 3
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 148 1.1e-18 3
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 151 1.2e-18 3
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 153 1.4e-18 3
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 153 1.4e-18 3
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 151 1.4e-18 3
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 138 3.7e-17 3
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 134 2.7e-16 3
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 174 1.7e-15 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 176 1.9e-15 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 175 2.5e-15 2
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 172 2.9e-15 2
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 172 2.9e-15 2
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 172 2.9e-15 2
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 171 3.2e-15 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 140 5.0e-15 3
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 171 7.4e-15 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 171 7.4e-15 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 171 7.4e-15 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 167 8.8e-15 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 129 1.0e-14 3
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 147 1.4e-14 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 126 1.7e-14 3
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 107 5.9e-14 3
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 126 7.2e-14 3
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 126 7.3e-14 3
UNIPROTKB|F1NWN2 - symbol:IGF2BP2 "Uncharacterized protei... 110 7.8e-14 3
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 126 9.2e-14 3
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 126 9.2e-14 3
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 105 9.7e-14 3
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 125 1.2e-13 3
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 125 1.2e-13 3
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 102 1.3e-13 3
SGD|S000000437 - symbol:PBP2 "RNA binding protein" specie... 126 1.3e-13 3
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 103 1.3e-13 3
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 103 1.3e-13 3
UNIPROTKB|F1NVW3 - symbol:IGF2BP2 "Uncharacterized protei... 110 3.7e-13 3
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 150 4.2e-13 2
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 122 5.2e-13 3
FB|FBgn0262735 - symbol:Imp "IGF-II mRNA-binding protein"... 144 5.8e-13 2
UNIPROTKB|K7GQ87 - symbol:RFC4 "Uncharacterized protein" ... 146 8.9e-13 2
UNIPROTKB|K7GKD3 - symbol:RFC4 "Uncharacterized protein" ... 146 1.0e-12 2
UNIPROTKB|F1SFK0 - symbol:RFC4 "Uncharacterized protein" ... 146 1.0e-12 2
UNIPROTKB|F1PDI8 - symbol:IGF2BP2 "Uncharacterized protei... 146 1.1e-12 2
UNIPROTKB|E1BFI4 - symbol:IGF2BP2 "Uncharacterized protei... 146 1.6e-12 2
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 124 1.9e-12 3
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 105 2.4e-12 3
MGI|MGI:1890359 - symbol:Igf2bp3 "insulin-like growth fac... 111 2.5e-12 3
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 120 2.5e-12 3
UNIPROTKB|J9P8W9 - symbol:IGF2BP3 "Uncharacterized protei... 109 2.6e-12 3
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 144 2.6e-12 2
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 103 2.7e-12 3
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 144 3.1e-12 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 166 3.2e-12 2
UNIPROTKB|O00425 - symbol:IGF2BP3 "Insulin-like growth fa... 108 3.3e-12 3
UNIPROTKB|F1MPB2 - symbol:IGF2BP3 "Uncharacterized protei... 108 3.3e-12 3
UNIPROTKB|Q5RB68 - symbol:IGF2BP2 "Insulin-like growth fa... 125 5.7e-12 3
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 139 6.4e-12 2
UNIPROTKB|Q9Y6M1 - symbol:IGF2BP2 "Insulin-like growth fa... 108 7.6e-12 3
UNIPROTKB|F8W930 - symbol:IGF2BP2 "Insulin-like growth fa... 108 7.8e-12 3
ZFIN|ZDB-GENE-060929-1258 - symbol:igf2bp1 "insulin-like ... 109 9.4e-12 3
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 138 1.4e-11 2
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 98 2.2e-11 3
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 136 2.2e-11 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 133 2.4e-11 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 136 2.5e-11 2
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 136 2.5e-11 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 133 3.2e-11 2
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 112 3.5e-11 3
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 116 3.9e-11 2
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 111 4.4e-11 3
WB|WBGene00016489 - symbol:C36E6.1 species:6239 "Caenorha... 126 5.4e-11 2
MGI|MGI:1890357 - symbol:Igf2bp1 "insulin-like growth fac... 109 1.1e-10 3
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 136 1.1e-10 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 125 2.0e-10 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 125 2.0e-10 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 125 2.0e-10 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 125 2.0e-10 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 125 2.0e-10 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 125 2.0e-10 2
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 107 2.1e-10 3
RGD|708580 - symbol:Igf2bp1 "insulin-like growth factor 2... 101 3.1e-10 3
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 123 3.4e-10 2
ZFIN|ZDB-GENE-041121-12 - symbol:zgc:101598 "zgc:101598" ... 105 5.8e-10 3
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 119 6.3e-10 2
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 105 9.0e-10 3
UNIPROTKB|J9P8J3 - symbol:J9P8J3 "Uncharacterized protein... 103 9.7e-10 3
UNIPROTKB|Q9NZI8 - symbol:IGF2BP1 "Insulin-like growth fa... 101 9.9e-10 3
UNIPROTKB|E1BKJ7 - symbol:IGF2BP1 "Uncharacterized protei... 101 9.9e-10 3
UNIPROTKB|E2RTC5 - symbol:IGF2BP1 "Uncharacterized protei... 101 9.9e-10 3
WARNING: Descriptions of 103 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 434 (157.8 bits), Expect = 2.8e-67, Sum P(3) = 2.8e-67
Identities = 90/226 (39%), Positives = 142/226 (62%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAK 186
DTV+R LCP +KIG VIG+ G+IVK LR +T++KI + + IPG +ERVI IYS P+
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYS-PS---- 103
Query: 187 TQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLV 246
D+ +A ++ + P AQDAL ++HDR++ +D + D +TA+LLV
Sbjct: 104 ----DETNAFGDGEKVLSP---AQDALFRIHDRVVADD---ARSEDSPEGEKQVTAKLLV 153
Query: 247 PNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALY 306
P++ +GC+LG+ G ++Q +RSETGA IR++ +P CA+N+DE++QISG+ + K+AL
Sbjct: 154 PSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALL 213
Query: 307 EVSTLLHQNPRKDKPPSSFPQAY--GGQNFHSPPAPMADMHPLGNS 350
++++ LH+NP + + S Y G H+ + + PL S
Sbjct: 214 QIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGGPRLVGLAPLMGS 259
Score = 239 (89.2 bits), Expect = 2.8e-67, Sum P(3) = 2.8e-67
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 345 HPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKILC 404
+P G+ A L G+ P MG YG G S P + + EF ++++
Sbjct: 236 YPAGSLMSHAGGPRLVGL--APLMGSYGRDA---GDWSRPLYQPPRNDPPATEFFIRLVS 290
Query: 405 SAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAI 464
+ QL+QET A+I V+ + T+ ++ +I SA E + S TI+A+
Sbjct: 291 PVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAV 350
Query: 465 LQLQNKTSEFSEK--GTI--TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVG 517
++LQ K S+ E+ G + TTRLLVPSS++GCILG+GG +I EMRR T+A+IR++G
Sbjct: 351 MRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILG 407
Score = 190 (71.9 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
+ T RLLVP++ +GC+LGK G +I +R T ANIR+L + LP A + DEMVQISG+
Sbjct: 369 SFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGEL 428
Query: 299 NVAKRALYEVSTLLHQN 315
+VAK AL ++++ L N
Sbjct: 429 DVAKEALIQITSRLRAN 445
Score = 147 (56.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 41/115 (35%), Positives = 62/115 (53%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVI-------RASAFEGLWNPRSQTIDAILQLQNKT- 471
VKQL+ +T + I + +A DERVI +AF S DA+ ++ ++
Sbjct: 72 VKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVV 131
Query: 472 -----SEFSEKGT--ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGAR 519
SE S +G +T +LLVPS ++GCILG+GG ++ +R T A IR+V R
Sbjct: 132 ADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDR 186
Score = 93 (37.8 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 102 GVVGIKKGNWSNSSREQSFGNSQPADTVY-RILCPSRKIGGVIGKAGNIVKSLREETQAK 160
G G G+WS + N PA + R++ P I VIGK G ++ LR+ET+A
Sbjct: 258 GSYGRDAGDWSRPLYQPP-RNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRAT 316
Query: 161 ITV 163
I V
Sbjct: 317 IKV 319
Score = 83 (34.3 bits), Expect = 5.8e-51, Sum P(3) = 5.8e-51
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQD 524
RL+ P + ++G+GG +IN++R+ T+A I+V +R + D
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGND 328
Score = 41 (19.5 bits), Expect = 2.8e-67, Sum P(3) = 2.8e-67
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 536 IRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNIN 571
+ GSS +G Y S +S + S+Y+ N
Sbjct: 510 VGGSSSTPYGVYGGYASGRSSSSGLSSHSSTYRRRN 545
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 424 (154.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 98/241 (40%), Positives = 145/241 (60%)
Query: 82 MDASKRNFFKKRPNNQFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGG 141
M ++ RN KR N Q + G G K+ N + + +Q+ S+ DTVYR LCP +K G
Sbjct: 1 MASTLRNIHGKRSNLQSEFTGNGGSKRRNLHDET-DQNVIASE--DTVYRYLCPVKKTGS 57
Query: 142 VIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKE 201
+IGK G I K +R ET++ + + + +PG EERV+ +YS+ ++ + DD
Sbjct: 58 IIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL---NHFGDDG------- 107
Query: 202 SMEPHCAAQDALLKVHDRIIEE-DLFGGMASDDD-NENSTITARLLVPNNMVGCLLGKRG 259
E C A DAL KVHD ++ + D G D+D E T+T R+LVP++ +GC++GK G
Sbjct: 108 --ELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGG 165
Query: 260 DVIQRLRSETGANIRVLPADRLPPCAMNT--DEMVQISGKPNVAKRALYEVSTLLHQNPR 317
VIQ LR++T A IRV+ D LP CA+ DE++ I G+P V + ALY+V++LLH NP
Sbjct: 166 QVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPS 224
Query: 318 K 318
+
Sbjct: 225 R 225
Score = 200 (75.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 47/124 (37%), Positives = 75/124 (60%)
Query: 397 EFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNP 456
EF + +C A + Q++QETGA+I V + TD D+ +I S+ E +
Sbjct: 268 EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKE-FYED 326
Query: 457 RSQTIDAILQLQNKTSEFSEKGT----ITTRLLVPSSKVGCILGQGGHVINEMRRRTQAD 512
+S ++A ++LQ + SE K I+TRLLV SS++GC++G+GG VI+EMR T+A+
Sbjct: 327 QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRAN 386
Query: 513 IRVV 516
IR++
Sbjct: 387 IRIL 390
Score = 190 (71.9 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 49/131 (37%), Positives = 71/131 (54%)
Query: 187 TQNKDDDSAAE--TKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARL 244
T DDD + KE E A +A +++ R E+ D N+ + I+ RL
Sbjct: 306 TSETDDDDCIIFISSKEFYEDQSPAVNAAIRLQQRCSEK------VGKDANDLA-ISTRL 358
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRA 304
LV ++ +GCL+GK G VI +RS T ANIR+L + +P A +EMVQI+G P+ A +A
Sbjct: 359 LVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKA 418
Query: 305 LYEVSTLLHQN 315
L +V L N
Sbjct: 419 LTQVILRLRAN 429
Score = 131 (51.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 472 SEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVV 516
++ EK T+T R+LVPS ++GC++G+GG VI +R T A IRV+
Sbjct: 138 NDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI 182
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 46/171 (26%), Positives = 75/171 (43%)
Query: 117 EQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPG-----S 170
+ G Q TV R+L PS +IG VIGK G ++++LR +T A+I V D +P S
Sbjct: 137 DNDLGEKQTV-TV-RMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLS 194
Query: 171 EERVIIIYSSPTKIAKTQNK------DDDSAAETKKESMEPHCAAQDALLKVHDRIIEED 224
+ +++I P + + + D+ S + S Q + + +
Sbjct: 195 HDELLLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSH 254
Query: 225 LFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+ D + + P VG ++GK G I ++R ETGA IRV
Sbjct: 255 RNYAVRRDIADAREFCVC-FICPAENVGGVIGKGGGFINQIRQETGATIRV 304
Score = 97 (39.2 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 133 LCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSS 180
+CP+ +GGVIGK G + +R+ET A I V +T ++ II SS
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRV-NTSETDDDDCIIFISS 320
Score = 46 (21.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 421 KQLQQETGASIHVEDAPTDSDERVI 445
KQ++ ET +++ + +A +ERV+
Sbjct: 67 KQIRSETKSNMRINEALPGCEERVV 91
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 147/480 (30%), Positives = 249/480 (51%)
Query: 81 IMDASKRNFFKKRPNNQFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIG 140
+++ KR + R NN + ++ S S E+ N VYRILCPS +G
Sbjct: 1 MVERGKRTHNRFRDNNNDNNRN----QRRRLSYESEEKKIDNKDDLVVVYRILCPSGVMG 56
Query: 141 GVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKK 200
VIGK+G ++ +R+ET+A+I V D PG ERVI I+ S + + KD ++
Sbjct: 57 SVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVS-----EKKDIVDIEYSEL 111
Query: 201 ESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGD 260
+ P C+AQ ALLKVHD I+ + D ++ RLLVP++ ++GK G
Sbjct: 112 DYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFR-ECRLLVPSSQCSIVIGKSGS 170
Query: 261 VIQRLRSETGANIRVLPADRLPP---CAMNTDEMVQISGKPNVAKRALYEVSTLLHQ-NP 316
+I+ +R T AN++V+ D P CAM+ D +V ISG+ K+AL+ VS ++++ +P
Sbjct: 171 IIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYKVSP 230
Query: 317 RKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL-HGMPSTPWMG----GY 371
R+ P + Q P+ ++ ++P +P+++S HG + ++G GY
Sbjct: 231 REQIPLDTTVQEVPASIII--PSDLS-IYPQAGL-YPSQDSIFQHGANVSSFIGTLPQGY 286
Query: 372 GDQ---PSRMGSGSINSCPPGQMGEVSAE-FSMKILCSAXXXXXXXXXXXFNVKQLQQET 427
G+ P + S S G G +E ++K++CS+ +K ++Q +
Sbjct: 287 GENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQAS 346
Query: 428 GASIHVEDAPTDSDER-VIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLV 486
G+ I V D+ T+ D+ VI +A E + +S ++A+L LQ K ++ ++ + +LLV
Sbjct: 347 GSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKIND-EDEDKVKMQLLV 405
Query: 487 PSSKVGCILGQGGHVINEMRRRTQADIRVV-GARV-KLQDPHPGSSECIVDIRGSSEHLI 544
S +GCI+G+ G +I+E+R+RT+ADI + G K DP+ E ++ + LI
Sbjct: 406 SSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALI 465
Score = 239 (89.2 bits), Expect = 9.2e-17, P = 9.2e-17
Identities = 86/341 (25%), Positives = 155/341 (45%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSS 180
G+S+ +++C S KIG VIGK G +K +R+ + + I V D+ ++ +I
Sbjct: 310 GSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVIT--- 366
Query: 181 PTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTI 240
+ T++ DD +SM A +A+L + ++I +ED +D +
Sbjct: 367 ---VTATESPDD-------LKSM-----AVEAVLLLQEKINDED--------EDK----V 399
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
+LLV + ++GC++GK G +I +R T A+I + + P CA DE+V+ISG+ +
Sbjct: 400 KMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSN 459
Query: 301 AKRALYEVSTLLHQNPRKDKPPSSF--PQAYG-GQNFHS----------PPAPMADMHPL 347
+ AL ++ L + +D+ S P A NF S P + M+ + +
Sbjct: 460 VRDALIQIVLRLRDDVLRDRETGSRNQPPARSENNNFFSSSSSNTGLALPQSFMSSVPQV 519
Query: 348 GNSSW---PARNSSLHGMPSTPWMGGYGDQP-SRMGSGSINSCPPGQMGEVSAEFSMKIL 403
+ + P SS+ +PS+ + GYG P GS +S G + +M++
Sbjct: 520 ASVDFNRRPETGSSMSMLPSSGGIYGYGSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVR 579
Query: 404 CSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSDERV 444
A N+ +++ +GA I + D+ RV
Sbjct: 580 IPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRV 620
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 481 (174.4 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 145/438 (33%), Positives = 225/438 (51%)
Query: 99 KRKGVVGIKKGNWSNSSREQSFGNSQPA---D--TVYRILCPSRKIGGVIGKAGNIVKSL 153
+RK I++ N S S+R Q S D VYRILCP +GGVIGK+G ++ ++
Sbjct: 3 ERKKRKQIQRNN-SESNRNQKRRISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAI 61
Query: 154 REETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDAL 213
R T+AKI V D + G +RVI IY S + K ++ TK E+ EP C AQDAL
Sbjct: 62 RHNTKAKIKVFDQLHGCSQRVITIYCS------VKEKQEEIGF-TKSEN-EPLCCAQDAL 113
Query: 214 LKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANI 273
LKV+D I+ D ++ D +++ RLLVP + L+GK G+ I+R+R T A++
Sbjct: 114 LKVYDAIVASDEENNTKTNVDRDDNK-ECRLLVPFSQSSSLIGKAGENIKRIRRRTRASV 172
Query: 274 RVLPADRLPP---CAMNTDEMVQISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAY 329
+V+ D P CAM D +V ISG+P K+AL+ VS ++++ NPR++ P S Q
Sbjct: 173 KVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDV 232
Query: 330 GGQNFHSPPAPMADMHPLGNSSWPARNSSLH---GMPS------TPWMGGYGDQPSRMGS 380
+ P ++P + ++ L G+PS GY + +
Sbjct: 233 PAASVIVPSDLSNSVYPQ-TGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAANPVP 291
Query: 381 GSINSCPP--GQMGEV-SAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAP 437
+S P G G S E K+LC +K++++ +G+ I V D+
Sbjct: 292 VFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSR 351
Query: 438 TD--SDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCIL 495
T DE VI +A E + +S ++A+L LQ ++ + + +LLV S +GC++
Sbjct: 352 TKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYIND-EDAENVKMQLLVSSKVIGCVI 410
Query: 496 GQGGHVINEMRRRTQADI 513
G+ G VINE+R+RT A+I
Sbjct: 411 GKSGSVINEIRKRTNANI 428
Score = 91 (37.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 35/158 (22%), Positives = 66/158 (41%)
Query: 289 DEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG 348
D++V++SG+ + + AL ++ L ++ DK + PPA + L
Sbjct: 436 DDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVAT---------RKPPARTDNCSFLS 486
Query: 349 NSSWPARN--SSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSA 406
SS S + M ST GYG P+ G + S P G + + +++IL A
Sbjct: 487 GSSNAGYTLPSFMSSMASTSGFHGYGSFPA--GDNVLGSTGPYSYGRLPSSSALEILIPA 544
Query: 407 XXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSDERV 444
N++ +++ +GA I + + T + +
Sbjct: 545 HAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHI 582
Score = 84 (34.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 118 QSFGNSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA 164
Q + N + A+ V ++L S+ IG VIGK+G+++ +R+ T A I ++
Sbjct: 384 QEYINDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICIS 431
Score = 60 (26.2 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 16/73 (21%), Positives = 35/73 (47%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
+L+P+ + ++G+GG + +RR + GA +++ + I + G+ E +
Sbjct: 540 ILIPAHAMSKVMGKGGGNLENIRR-------ISGAMIEISASKTSHGDHIALLSGTLEQM 592
Query: 544 ISAHGTYQSFMTS 556
A Q+F+ S
Sbjct: 593 RCAENLVQAFVMS 605
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 160/500 (32%), Positives = 237/500 (47%)
Query: 95 NNQFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLR 154
NN+++ G G G S S E A T YRILC K GGVIGK+G I+KS+R
Sbjct: 41 NNRYRGGGGGGGGNGRPSKSHPETM------ATTTYRILCHDAKAGGVIGKSGTIIKSIR 94
Query: 155 EETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALL 214
+ T A I V + +PG ER+I +I+ + +D D + S P AQ+AL
Sbjct: 95 QHTGAWINVHELVPGDAERII-------EISDNRRRDPDG----RMPSFSP---AQEALF 140
Query: 215 KVHDRIIEEDL---FGGMASDDDNE-------NSTITARLLVPNNMVGCLLGKRGDVIQR 264
VHDRI+E + +GG +++ + + RL+V VGCLLGK G +I++
Sbjct: 141 SVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQ 200
Query: 265 LRSETGANIRVLPAD-RLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPS 323
+R ET +IR+LP + LP C ++E+VQI G+ N K AL VS+ L ++ +D+ S
Sbjct: 201 MRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRESQHRDR--S 258
Query: 324 SFPQAYGGQNFHSPPAPMADMHPLGNSSWPA-RNSSLHGMPSTPWMGGYGDQPSRMGSGS 382
+F G++ HSP A G+ P R S P + + SR S
Sbjct: 259 NFQ----GRS-HSPERSFA---AAGDDYMPQLRRQSSDRFPRGNFRNN--NFSSRQ-SNY 307
Query: 383 INSCPPGQMGE--VSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDS 440
P +GE S E +ILC A + LQ E G + V D S
Sbjct: 308 AEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGS 367
Query: 441 DERVIRASAFEGLWNPRSQTIDAILQLQNKTSEF--SEKGTITTRLLVPSSKVGCILGQG 498
DE++I S+ E +P +A+L +Q + + + ITTRLLVPS C+ G+
Sbjct: 368 DEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLIPDKDNLITTRLLVPSRDSICLEGKA 427
Query: 499 GHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV-----DIRGSSEHLISAHGTYQSF 553
G V +E+ R T ++++ AR ++ P S +V +IR + E L+ +S
Sbjct: 428 GSV-SEISRLTGTSVQIL-AREEI--PRCASINDVVIQITGEIRAAREALVELTLLLRSH 483
Query: 554 MTSGQSMK-VQPSSYQNINP 572
M S K P+S P
Sbjct: 484 MFKELSQKETPPASTSTTGP 503
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 317 (116.6 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 124/425 (29%), Positives = 186/425 (43%)
Query: 111 WSNSSREQSFGNSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIP- 168
+S S R + + A++V +R+LCP+ + G +IGK G++++ L+ T +KI V D IP
Sbjct: 3 FSTSKRPATTATA--AESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPV 60
Query: 169 GSEERVIIIYSSPTKIAKTQNKDDDS--AAETKKESMEPHCA-------------AQDAL 213
SEERV++I + K N D +E K+ CA AQ AL
Sbjct: 61 PSEERVVLIIAPSGKKKDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMAL 120
Query: 214 LKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVG-CLLGKRGDVIQRLRSETGAN 272
L+V +RI+ FG DD +T+ L G C + RG+ + L S+ G
Sbjct: 121 LRVFERIV----FG-----DDA--ATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKM 169
Query: 273 IRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQ 332
I+ + D + +V+IS + A + ++ N + +
Sbjct: 170 IQKIRED--------SGAIVRISSTDQIPPCA-FPGDVVIQMNGKFSSVKKALLLVTNCL 220
Query: 333 NFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
P P D P +P S+ P W D P + P
Sbjct: 221 QESGAP-PTWDECPFPQPGYPPEYHSMEYHPQ--W-----DHPPP--NPMPEDVGPFNRP 270
Query: 393 EVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEG 452
V E + ++LC A V+ LQ E+GASI V D DS+ER+I SA E
Sbjct: 271 VVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISAREN 330
Query: 453 LWNPRSQTIDAILQLQNKTSE--FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQ 510
L S D ++++ N+ E F + RLLV S +G +LG+GGH+I+EMRR T
Sbjct: 331 LERRHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATG 390
Query: 511 ADIRV 515
A IRV
Sbjct: 391 ASIRV 395
Score = 174 (66.3 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 59/186 (31%), Positives = 88/186 (47%)
Query: 187 TQNKDDDSAAETKKESMEP-HCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLL 245
T + ++ + +E++E H AQD +++VH+RI+E G S + + ARLL
Sbjct: 315 THDSEERIIVISARENLERRHSLAQDGVMRVHNRIVE---IGFEPS------AAVVARLL 365
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
V + +G LLGK G +I +R TGA+IRV D+ DE+VQ+ G + AL
Sbjct: 366 VHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDAL 425
Query: 306 YEVSTLLHQNPRKDKPPSSFP-QAYGGQN--FHSP-PAPMADMHPLGNSSWPARNSSLHG 361
+++ L R+ P P Q GG F P P P P G +PA H
Sbjct: 426 FQILCRL----REAMFPGRLPFQGMGGPPPPFMGPYPEPPP---PFGPRQYPASPDRYHS 478
Query: 362 MPSTPW 367
P P+
Sbjct: 479 -PVGPF 483
Score = 83 (34.3 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 485 LVPSSKVGCILGQG--GHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
++ S+ V ++ Q GHV E +V GA V + DP G++E +V + G+S+
Sbjct: 545 VMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQ 604
Query: 543 LISAHGTYQSFMTSGQS 559
A +F+ GQS
Sbjct: 605 AHFAQSLLHAFILCGQS 621
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 241 (89.9 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 77/242 (31%), Positives = 113/242 (46%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT-- 182
P +T R++C + IGG+IG G +V LR ET KI + GS+ V+ I S
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVN 81
Query: 183 -KIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDR--IIEEDLFGGMASDDDNENST 239
I T + S E + AAQ AL++V +R ++ GG D ++E +
Sbjct: 82 QSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAY 141
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
+L N +G +LG G ++ +R +GA IRVLP P C DE++QI+G
Sbjct: 142 --CGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVL 196
Query: 300 VAKRALYEVSTLLHQN-PRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWP-ARNS 357
K+AL VS+ + N P PP P + G S D H + +P R+S
Sbjct: 197 AVKKALVMVSSYIQNNAPLNGYPP---PLSIKGYESLSTDGNSEDPH---SEFFPNLRSS 250
Query: 358 SL 359
SL
Sbjct: 251 SL 252
Score = 110 (43.8 bits), Expect = 9.3e-10, Sum P(3) = 9.3e-10
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 112 SNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE 171
SN GNS V++I+ S GG+IGK G I+++L+ ET A I+V + S
Sbjct: 261 SNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSG 320
Query: 172 ERVIII 177
ERV+ +
Sbjct: 321 ERVVTV 326
Score = 106 (42.4 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 46/139 (33%), Positives = 67/139 (48%)
Query: 420 VKQLQQETGASIHVEDAPTD-SDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFS-EK 477
++ LQ ETGASI V AP S ERV+ SA E L + S +A+ + ++ E EK
Sbjct: 299 IRALQNETGASISV-GAPLKVSGERVVTVSARENLESRYSHAQNALALVFARSVEIDVEK 357
Query: 478 GT---------ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV-VGARVKLQDPHP 527
G + T+LLVPS G G E T AD+ + VG +V L+
Sbjct: 358 GLRPGLHNGAIVKTKLLVPSHFANSFNGNGNR---EAIIATGADVHISVGNQV-LE--WI 411
Query: 528 GSSECIVDIRGSSEHLISA 546
+E +++I+G H+ A
Sbjct: 412 SENEVVIEIKGEYSHVQKA 430
Score = 91 (37.1 bits), Expect = 9.3e-10, Sum P(3) = 9.3e-10
Identities = 31/122 (25%), Positives = 63/122 (51%)
Query: 200 KESMEPHCA-AQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKR 258
+E++E + AQ+AL V R +E D+ G+ N + + +LLVP++ G
Sbjct: 329 RENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHN-GAIVKTKLLVPSHFANSFNGN- 386
Query: 259 GDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN--P 316
G+ + TGA++ + +++ + +++I G+ + ++AL VS+ L +N P
Sbjct: 387 GN--REAIIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLP 444
Query: 317 RK 318
+K
Sbjct: 445 KK 446
Score = 76 (31.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
IT L V + +G L G+ G + L+ +GAN+ V D P T+ V ISG P
Sbjct: 564 ITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDV--KD---PTG--TEATVLISGNPE 616
Query: 300 VAKRALYEVSTLL 312
A+ A+ + ++L
Sbjct: 617 QARTAMSLIESIL 629
Score = 66 (28.3 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 372 GDQPSRMGS-GSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGAS 430
G + +M S G ++S PP G + ++++ V LQQ +GA+
Sbjct: 537 GMKQLQMSSNGDVSSLPPRSKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGAN 596
Query: 431 IHVEDAPTDSDERVI 445
+ V+D PT ++ V+
Sbjct: 597 VDVKD-PTGTEATVL 610
Score = 55 (24.4 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
S + + +++ S G I+G+ G +I ++ T A I V GA +K+ S E +V
Sbjct: 272 STERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV-GAPLKV------SGERVV 324
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNINP 572
+ + E+L S + Q+ + + V+ + + P
Sbjct: 325 TV-SARENLESRYSHAQNALALVFARSVEIDVEKGLRP 361
Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 501 VINEMRRRTQADIRVVGARVKLQDPHPGSSE 531
V+ EMR R G R ++ + P +
Sbjct: 447 VLGEMRARVSNPYESAGGRSQIYNLQPSQQD 477
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 173 (66.0 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 59/183 (32%), Positives = 88/183 (48%)
Query: 194 SAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGC 253
S E + S+ P + D LL+VH RI+ D G AS S ++ RLLVP + G
Sbjct: 237 SGKEEPESSLPP---SMDGLLRVHMRIV--DGLDGEASQAPPP-SKVSTRLLVPASQAGS 290
Query: 254 LLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLH 313
L+GK+G ++ ++ + +RVL ++ LP A+ D +V++ G+P RAL +++ L
Sbjct: 291 LIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHL- 349
Query: 314 QNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSW-PARNSSLHGMPSTPWMGGYG 372
RK S + Q P M M P + SW P + H PS GGYG
Sbjct: 350 ---RKFLVDRSIIPFFENQ-MQKPTRQMDHMPP-PHQSWGPPQG---HA-PSVGG-GGYG 399
Query: 373 DQP 375
P
Sbjct: 400 HNP 402
Score = 142 (55.0 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 22/53 (41%), Positives = 41/53 (77%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIII 177
P +TV+R+L P++K+G +IG+ G+++K + EET+A+I + D PG+ ER +++
Sbjct: 184 PGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMV 236
Score = 103 (41.3 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGK 297
R+LVP VG ++G++GDVI+++ ET A I++L PP T+ V +SGK
Sbjct: 190 RMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDG---PPGT--TERAVMVSGK 239
Score = 75 (31.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 37/173 (21%), Positives = 66/173 (38%)
Query: 321 PPSSFPQAYGGQNF-HSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMG--GYGDQPSR 377
PP + GG + H+PP P P +S +P M P G YG +P
Sbjct: 385 PPQGHAPSVGGGGYGHNPP-PYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGREPPM 443
Query: 378 MGSGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAP 437
+ ++S PP +V+ + M+I S N+ ++ +GA++ +++
Sbjct: 444 --NVHVSSAPPMVAQQVTQQ--MQIPLSYADAVIGTSGS--NISYTRRLSGATVTIQETR 497
Query: 438 TDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSK 490
E + S G SQ A+ +QN +E + + P +
Sbjct: 498 GVPGEMTVEVSG-TG-----SQVQTAVQLIQNFMAEAGAPAPAQPQTVAPEQQ 544
Score = 72 (30.4 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+T ++ +P S ++G G I+ RR + GA V +Q+ E V++ G+
Sbjct: 458 VTQQMQIPLSYADAVIGTSGSNISYTRRLS-------GATVTIQETRGVPGEMTVEVSGT 510
Query: 540 SEHLISAHGTYQSFMT-SGQSMKVQPSSY----QNINP 572
+ +A Q+FM +G QP + Q NP
Sbjct: 511 GSQVQTAVQLIQNFMAEAGAPAPAQPQTVAPEQQGYNP 548
Score = 54 (24.1 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 24/114 (21%), Positives = 46/114 (40%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEM-VQISGKP 298
+T ++ +P + ++G G I R +GA + + +P EM V++SG
Sbjct: 458 VTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVP------GEMTVEVSGTG 511
Query: 299 NVAKRALYEVSTLLHQN--PRKDKPPSSFP--QAYGGQNFHSPPAPMADMHPLG 348
+ + A+ + + + P +P + P Q Y H A +P G
Sbjct: 512 SQVQTAVQLIQNFMAEAGAPAPAQPQTVAPEQQGYNPYATHGSVYAAAPTNPPG 565
Score = 39 (18.8 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 353 PARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQM 391
P R P W G PS +G G PP M
Sbjct: 369 PTRQMDHMPPPHQSWGPPQGHAPS-VGGGGYGHNPPPYM 406
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 262 (97.3 bits), Expect = 9.2e-22, P = 9.2e-22
Identities = 63/162 (38%), Positives = 95/162 (58%)
Query: 163 VADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIE 222
V + +PG +ERV+ IYS N ++ + E E C A DAL KVHD ++
Sbjct: 3 VNEALPGCDERVVTIYS---------NSEERNRIEDDNEDFV--CPAFDALFKVHDMVVV 51
Query: 223 EDLFGGMASDDDNENS----TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA 278
E+ +D++E S +T R+LVP++ +G L+GK G +IQ LR++T A IRV
Sbjct: 52 EEFDDDDDYNDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRN- 110
Query: 279 DRLPPCAM--NTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
D LP CA+ + DE++QI G P+ + ALY+V+ LL+ NP +
Sbjct: 111 DNLPMCALALSHDELLQIIGDPSAVREALYQVAFLLYNNPSR 152
Score = 110 (43.8 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 469 NKTSEFSEKGTITT-RLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
N E+SE T+ T R+LVPS ++G ++G+GG +I +R T A IRV
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV 108
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 159 (61.0 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 54/198 (27%), Positives = 91/198 (45%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P + + ++ ++ ++P K +P
Sbjct: 128 STGAQVQVA-GDMLPN---STERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPK 183
Query: 322 PSSFPQAY-GGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGS 380
P+S P + GGQ P A A L P ++ G + P + DQ +++
Sbjct: 184 PASTPVIFSGGQVRADPLAASAANLSLLLQHQPLPAYTIQGQYAIP----HPDQLTKLHQ 239
Query: 381 GSINSCPPGQMGEVSAEF 398
++ P +G+ + F
Sbjct: 240 LAMQQTPFTPLGQTTPAF 257
Score = 135 (52.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 40/131 (30%), Positives = 70/131 (53%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 38 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 93
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I EMR T A ++V G D P S+E
Sbjct: 94 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAG------DMLPNSTERA 147
Query: 534 VDIRGSSEHLI 544
V I G+ E +I
Sbjct: 148 VTISGTPEAII 158
Score = 120 (47.3 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEMREST 129
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 130 GAQVQVAGDMLPNSTERAVTISGTPEAI 157
Score = 102 (41.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ TD + +
Sbjct: 13 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK 72
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + ++ + +P KPP
Sbjct: 73 AFAM--IAYKFEEDIINSMSNSPATSKPP 99
Score = 98 (39.6 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 115 SREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
S+ QS G T+ R+L +++G +IGK G VK +REE+ A+I +++ ER+
Sbjct: 4 SKVQSEGGLNVTLTI-RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERI 60
Query: 175 IIIYSSPT 182
+ I + PT
Sbjct: 61 VTI-TGPT 67
Score = 97 (39.2 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 30/126 (23%), Positives = 54/126 (42%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDD------DNENSTITARLLVPNNMVGCLLGKR 258
PH D L K+H +++ F + D T L +PN+++GC++G++
Sbjct: 229 PH---PDQLTKLHQLAMQQTPFTPLGQTTPAFPGLDASPPASTHELTIPNDLIGCIIGRQ 285
Query: 259 GDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
G I +R +GA I++ A +++ + I+G P A Y ++
Sbjct: 286 GTKINEIRQMSGAQIKIANA-----MEGSSERQITITGTPANISLAQYLINARFRDVAAM 340
Query: 319 DKPPSS 324
PSS
Sbjct: 341 WNDPSS 346
Score = 93 (37.8 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 268 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANAMEGSSERQITITGTP 320
Query: 541 EHLISAHGTYQSFMTSGQSMKVQPSS 566
++ A + +M PSS
Sbjct: 321 ANISLAQYLINARFRDVAAMWNDPSS 346
Score = 37 (18.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 593 QQSPYHRVNAQQSPYQNINPQQSSYP-MHTHQGAGTNPHITPTQXXXXXXXAQQGT 647
Q + H++ QQ+P+ + ++P + A T+ +T +QGT
Sbjct: 233 QLTKLHQLAMQQTPFTPLGQTTPAFPGLDASPPASTH-ELTIPNDLIGCIIGRQGT 287
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 148 (57.2 bits), Expect = 8.4e-19, Sum P(3) = 8.4e-19
Identities = 49/165 (29%), Positives = 78/165 (47%)
Query: 212 ALLKVHDRIIE---EDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSE 268
A+ K IIE ED+ M++ +T R++VP + G L+GK G I+ +R
Sbjct: 67 AIFKAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRES 126
Query: 269 TGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP-P 322
TGA ++V D LP +T+ + I+G P + ++ ++ ++P K +P P
Sbjct: 127 TGAQVQVA-GDMLPN---STERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 323 SSFP------QAYGGQNFHSPPAP-MADMHPLG--NSSWPARNSS 358
S P QAY Q H+ P P + +H L S +P SS
Sbjct: 183 SGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPLAPSS 227
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 52/220 (23%), Positives = 91/220 (41%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ S I+ + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTTAIFKAFSMIIEKLEEDISSSMSNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ K +T R++VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 TSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQNMNTQQ 594
I G+ +I M V Y+ P Q +
Sbjct: 147 TIAGTPLSIIECVKQICVVMLESPPKGVT-IPYRP-KPSGSPVIFAGGQAYAVQGQHAIP 204
Query: 595 SP----YHRVNAQQSPYQNINPQQSSYPMHTHQGAGTNPH 630
P H++ QQSP+ + P + A T H
Sbjct: 205 QPDLTKLHQLAMQQSPFP-LAPSSQGFTAGMDASAQTGSH 243
Score = 125 (49.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 113 NSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSE 171
+SS S S+P T+ RI+ P+ + G +IGK G +K +RE T A++ VA D +P S
Sbjct: 84 SSSMSNSTATSKPPVTL-RIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST 142
Query: 172 ERVIIIYSSPTKI 184
ER I I +P I
Sbjct: 143 ERAITIAGTPLSI 155
Score = 96 (38.9 bits), Expect = 8.4e-19, Sum P(3) = 8.4e-19
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS---- 539
L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GSS+ V I GS
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSSDRQVTITGSPASI 297
Query: 540 --SEHLISA 546
+E+LI+A
Sbjct: 298 SLAEYLINA 306
Score = 94 (38.1 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ A T + +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTTAIFK 70
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+ ++ ++S+ + + KPP
Sbjct: 71 AFSM--IIEKLEEDISSSMSNSTATSKPP 97
Score = 93 (37.8 bits), Expect = 8.4e-19, Sum P(3) = 8.4e-19
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + T I K +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTTAIFKAFSM 74
Query: 191 DDDSAAETKKESM 203
+ E SM
Sbjct: 75 IIEKLEEDISSSM 87
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 148 (57.2 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 41/132 (31%), Positives = 67/132 (50%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P + + ++ ++ ++P K +P
Sbjct: 128 STGAQVQVA-GDMLPN---STERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPK 183
Query: 322 PSSFPQAY-GGQ 332
P++ P + GGQ
Sbjct: 184 PATAPVIFSGGQ 195
Score = 133 (51.9 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 40/131 (30%), Positives = 70/131 (53%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+ A I+V + + ER++ + + ++ + D I + N S+
Sbjct: 38 VKKMREESSARINVSEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SQ 93
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I EMR T A ++V G D P S+E
Sbjct: 94 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAG------DMLPNSTERA 147
Query: 534 VDIRGSSEHLI 544
V I G+ E +I
Sbjct: 148 VTISGTPEAII 158
Score = 121 (47.7 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSQATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEMREST 129
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 130 GAQVQVAGDMLPNSTERAVTISGTPEAI 157
Score = 101 (40.6 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 115 SREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
S+ QS G T+ R+L +++G +IGK G VK +REE+ A+I V++ ER+
Sbjct: 4 SKVQSEGGLNVTLTI-RLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG--NCPERI 60
Query: 175 IIIYSSPT 182
+ I + PT
Sbjct: 61 VTI-TGPT 67
Score = 99 (39.9 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D + T L +PN+++GC++G++G I +R +GA I++ A ++D +
Sbjct: 261 DASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA-----MEGSSDRQIT 315
Query: 294 ISGKPNVAKRALYEVS 309
I+G P A Y ++
Sbjct: 316 ITGTPANISLAQYLIN 331
Score = 90 (36.7 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSS+ + I G+
Sbjct: 268 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANAMEGSSDRQITITGTP 320
Query: 541 EHLISAHGTYQSFMTSGQSMKVQPSS 566
++ A + +M PS+
Sbjct: 321 ANISLAQYLINARFRDVAAMWTDPST 346
Score = 90 (36.7 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+ A I V
Sbjct: 13 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINV 51
Score = 43 (20.2 bits), Expect = 6.7e-14, Sum P(3) = 6.7e-14
Identities = 13/63 (20%), Positives = 32/63 (50%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGT 479
+ +++Q +GA I + +A S +R I + + I+A + ++ + +++ T
Sbjct: 289 INEIRQMSGAQIKIANAMEGSSDRQITITGTPANISLAQYLINA--RFRDVAAMWTDPST 346
Query: 480 ITT 482
+TT
Sbjct: 347 MTT 349
Score = 38 (18.4 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 598 HRVNAQQSPYQNINPQQSSYPMHTHQGAGTNPHITPTQXXXXXXXAQQGT 647
H++ QQ+P+ ++ ++P + +T +QGT
Sbjct: 238 HQLAMQQTPFTSLGQTTPAFPGVDASSQASTHELTIPNDLIGCIIGRQGT 287
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 151 (58.2 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 43/134 (32%), Positives = 68/134 (50%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M + +T RL+VP + G L+GK G I+ +R
Sbjct: 66 DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 126 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 181
Query: 322 PSSFPQAY-GGQNF 334
P+S P + GGQ F
Sbjct: 182 PASAPIIFAGGQAF 195
Score = 130 (50.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ +K N+S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 69 FKAFSMIALKFEEDINASMTNSTVTSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 128 GAQVQVAGDMLPNSTERAVTISGTPDAI 155
Score = 129 (50.5 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 36/129 (27%), Positives = 67/129 (51%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQT---IDAILQLQNKTSEFS 475
VK++++E+GA I++ + ER++ + + ++ S + + S +
Sbjct: 36 VKKMREESGARINISEG--SCPERIVTITGPTDAIFKAFSMIALKFEEDINASMTNSTVT 93
Query: 476 EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVD 535
K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E V
Sbjct: 94 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERAVT 147
Query: 536 IRGSSEHLI 544
I G+ + +I
Sbjct: 148 ISGTPDAII 156
Score = 97 (39.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D + T + L +PN+++GC++G++G I +R +GA I++ A + + V
Sbjct: 236 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE-----GSAERQVT 290
Query: 294 ISGKPNVAKRALYEVS 309
I+G P A Y ++
Sbjct: 291 ITGSPANISLAQYLIN 306
Score = 95 (38.5 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 49
Score = 93 (37.8 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ GS ER++ I + PT
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIVTI-TGPT 65
Score = 91 (37.1 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ + GS+E V I G
Sbjct: 241 TSSHELTIPNDLIGCIIGRQGSKINEIRQMS-------GAQIKIANATEGSAERQVTITG 293
Query: 539 SSEHL 543
S ++
Sbjct: 294 SPANI 298
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 153 (58.9 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 41/137 (29%), Positives = 68/137 (49%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 126 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 181
Query: 322 PSSFPQAYGGQNFHSPP 338
P+S P + G + P
Sbjct: 182 PASTPVIFAGGQVRADP 198
Score = 128 (50.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 38/131 (29%), Positives = 70/131 (53%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 36 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 91
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 92 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 145
Query: 534 VDIRGSSEHLI 544
V I G+ + +I
Sbjct: 146 VTISGTPDAII 156
Score = 120 (47.3 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 128 GAQVQVAGDMLPNSTERAVTISGTPDAI 155
Score = 102 (41.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 214 LKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANI 273
L +H ++L G +S D T L +PN+++GC++G++G I +R +GA I
Sbjct: 259 LPLHSSEEAQNLMG-QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 317
Query: 274 RVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
++ A +++ + I+G P A Y ++ L
Sbjct: 318 KIANATE-----GSSERQITITGTPANISLAQYLINARL 351
Score = 102 (41.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ TD + +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK 70
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + ++ + +P KPP
Sbjct: 71 AFAM--IAYKFEEDIINSMSNSPATSKPP 97
Score = 94 (38.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 337
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 338 ANISLAQYLINARLTS 353
Score = 91 (37.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 65
Score = 49 (22.3 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGT 479
+ +++Q +GA I + +A S ER I + P + ++ L TSE + GT
Sbjct: 306 INEIRQMSGAQIKIANATEGSSERQITITG-----TPANISLAQYLINARLTSEVTGMGT 360
Query: 480 I 480
+
Sbjct: 361 L 361
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 153 (58.9 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 41/137 (29%), Positives = 68/137 (49%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 126 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 181
Query: 322 PSSFPQAYGGQNFHSPP 338
P+S P + G + P
Sbjct: 182 PASTPVIFAGGQVRADP 198
Score = 128 (50.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 38/131 (29%), Positives = 70/131 (53%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 36 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 91
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 92 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 145
Query: 534 VDIRGSSEHLI 544
V I G+ + +I
Sbjct: 146 VTISGTPDAII 156
Score = 120 (47.3 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 128 GAQVQVAGDMLPNSTERAVTISGTPDAI 155
Score = 102 (41.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 214 LKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANI 273
L +H ++L G +S D T L +PN+++GC++G++G I +R +GA I
Sbjct: 259 LPLHSSEEAQNLMG-QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 317
Query: 274 RVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
++ A +++ + I+G P A Y ++ L
Sbjct: 318 KIANATE-----GSSERQITITGTPANISLAQYLINARL 351
Score = 102 (41.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ TD + +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK 70
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + ++ + +P KPP
Sbjct: 71 AFAM--IAYKFEEDIINSMSNSPATSKPP 97
Score = 94 (38.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 337
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 338 ANISLAQYLINARLTS 353
Score = 91 (37.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 65
Score = 47 (21.6 bits), Expect = 8.7e-14, Sum P(3) = 8.7e-14
Identities = 28/129 (21%), Positives = 51/129 (39%)
Query: 322 PSSFPQAYGGQNFHSPPAP-MADMHPLG--NSSWPARNSSLHGMPSTPW-MGGYGDQPSR 377
P P AY Q ++ P P + +H L + +P + P + + +
Sbjct: 212 PPPLP-AYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNL 270
Query: 378 MGSGS-INSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDA 436
MG S +++ PP E++ + I C + +++Q +GA I + +A
Sbjct: 271 MGQSSGLDASPPASTHELTIPNDL-IGCIIGRQGT-------KINEIRQMSGAQIKIANA 322
Query: 437 PTDSDERVI 445
S ER I
Sbjct: 323 TEGSSERQI 331
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 151 (58.2 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 43/134 (32%), Positives = 68/134 (50%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M + +T RL+VP + G L+GK G I+ +R
Sbjct: 66 DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 126 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 181
Query: 322 PSSFPQAY-GGQNF 334
P+S P + GGQ F
Sbjct: 182 PASAPIIFAGGQAF 195
Score = 130 (50.8 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ +K N+S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 69 FKAFSMIALKFEEDINASMTNSTVTSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 128 GAQVQVAGDMLPNSTERAVTISGTPDAI 155
Score = 129 (50.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 36/129 (27%), Positives = 67/129 (51%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQT---IDAILQLQNKTSEFS 475
VK++++E+GA I++ + ER++ + + ++ S + + S +
Sbjct: 36 VKKMREESGARINISEG--SCPERIVTITGPTDAIFKAFSMIALKFEEDINASMTNSTVT 93
Query: 476 EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVD 535
K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E V
Sbjct: 94 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERAVT 147
Query: 536 IRGSSEHLI 544
I G+ + +I
Sbjct: 148 ISGTPDAII 156
Score = 97 (39.2 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D + T + L +PN+++GC++G++G I +R +GA I++ A + + V
Sbjct: 239 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE-----GSAERQVT 293
Query: 294 ISGKPNVAKRALYEVS 309
I+G P A Y ++
Sbjct: 294 ITGSPANISLAQYLIN 309
Score = 95 (38.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 49
Score = 93 (37.8 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ GS ER++ I + PT
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIVTI-TGPT 65
Score = 91 (37.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ + GS+E V I G
Sbjct: 244 TSSHELTIPNDLIGCIIGRQGSKINEIRQMS-------GAQIKIANATEGSAERQVTITG 296
Query: 539 SSEHL 543
S ++
Sbjct: 297 SPANI 301
Score = 42 (19.8 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVI 445
+ +++Q +GA I + +A S ER +
Sbjct: 267 INEIRQMSGAQIKIANATEGSAERQV 292
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 138 (53.6 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 42/155 (27%), Positives = 68/155 (43%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 74 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 133
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQ 327
TGA ++V D LP +T+ V ISG P+ + + ++ ++ + + + P
Sbjct: 134 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLE-AYTIQGQYAIPH 188
Query: 328 AYGGQNFHSPPAPMADMHPLG--NSSWPARNSSLH 360
H PLG N ++P LH
Sbjct: 189 PDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLH 223
Score = 128 (50.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 38/131 (29%), Positives = 70/131 (53%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 44 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 99
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 100 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 153
Query: 534 VDIRGSSEHLI 544
V I G+ + +I
Sbjct: 154 VTISGTPDAII 164
Score = 120 (47.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 77 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 135
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 136 GAQVQVAGDMLPNSTERAVTISGTPDAI 163
Score = 102 (41.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 214 LKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANI 273
L +H ++L G +S D T L +PN+++GC++G++G I +R +GA I
Sbjct: 220 LPLHSSEEAQNLMG-QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 278
Query: 274 RVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
++ A +++ + I+G P A Y ++ L
Sbjct: 279 KIANATE-----GSSERQITITGTPANISLAQYLINARL 312
Score = 102 (41.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ TD + +
Sbjct: 19 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK 78
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + ++ + +P KPP
Sbjct: 79 AFAM--IAYKFEEDIINSMSNSPATSKPP 105
Score = 94 (38.1 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 246 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 298
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 299 ANISLAQYLINARLTS 314
Score = 91 (37.1 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 25 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 73
Score = 55 (24.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 38/196 (19%), Positives = 72/196 (36%)
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHP 346
+T+ V ISG P+ + + ++ ++ + + + P H P
Sbjct: 149 STERAVTISGTPDAIIQCVKQICVVMLE-AYTIQGQYAIPHPDQLTKLHQLAMQQTPFPP 207
Query: 347 LG--NSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKILC 404
LG N ++P LH + G S +++ PP E++ + I C
Sbjct: 208 LGQTNPAFPGEKLPLHSSEEAQNLMGQ--------SSGLDASPPASTHELTIPNDL-IGC 258
Query: 405 SAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAI 464
+ +++Q +GA I + +A S ER I + P + ++
Sbjct: 259 IIGRQGT-------KINEIRQMSGAQIKIANATEGSSERQITITG-----TPANISLAQY 306
Query: 465 LQLQNKTSEFSEKGTI 480
L TSE + GT+
Sbjct: 307 LINARLTSEVTGMGTL 322
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 593 QQSPYHRVNAQQSPYQNINPQQSSYP 618
Q + H++ QQ+P+ + ++P
Sbjct: 191 QLTKLHQLAMQQTPFPPLGQTNPAFP 216
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 134 (52.2 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 42/136 (30%), Positives = 66/136 (48%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M + +T RL+VP + G L+GK G I+ +R
Sbjct: 65 DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 124
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL-----HQNPRKD--- 319
TGA ++V D LP +T+ V ISG P+ + + ++ ++ H P+
Sbjct: 125 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLEVSEHSPPKGATIP 180
Query: 320 -KP-PSSFPQAY-GGQ 332
+P P+S P + GGQ
Sbjct: 181 YRPKPASAPIIFAGGQ 196
Score = 130 (50.8 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ +K N+S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 68 FKAFSMIALKFEEDINASMTNSTVTSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 126
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 127 GAQVQVAGDMLPNSTERAVTISGTPDAI 154
Score = 129 (50.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 36/129 (27%), Positives = 67/129 (51%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQT---IDAILQLQNKTSEFS 475
VK++++E+GA I++ + ER++ + + ++ S + + S +
Sbjct: 35 VKKMREESGARINISEG--SCPERIVTITGPTDAIFKAFSMIALKFEEDINASMTNSTVT 92
Query: 476 EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVD 535
K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E V
Sbjct: 93 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERAVT 146
Query: 536 IRGSSEHLI 544
I G+ + +I
Sbjct: 147 ISGTPDAII 155
Score = 99 (39.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D + T + L +PN+++GC++G++G I +R +GA I++ A + + V
Sbjct: 274 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE-----GSAERQVT 328
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G P A Y ++ L
Sbjct: 329 ITGSPANISLAQYLINARL 347
Score = 95 (38.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 10 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 48
Score = 93 (37.8 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ GS ER++ I + PT
Sbjct: 16 RLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIVTI-TGPT 64
Score = 91 (37.1 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ + GS+E V I G
Sbjct: 279 TSSHELTIPNDLIGCIIGRQGSKINEIRQMS-------GAQIKIANATEGSAERQVTITG 331
Query: 539 SSEHL 543
S ++
Sbjct: 332 SPANI 336
Score = 42 (19.8 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVI 445
+ +++Q +GA I + +A S ER +
Sbjct: 302 INEIRQMSGAQIKIANATEGSAERQV 327
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 174 (66.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 77/289 (26%), Positives = 120/289 (41%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 30 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 87
Query: 175 IIIYSSPTKIAKTQNKDDDSAAETKKESME-PHCAAQDALLKVHDRI--IEEDLFGGMAS 231
+ I + I + K T +E ++ P A L D + + + G S
Sbjct: 88 LSISADIETIGEILKK----IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG--S 141
Query: 232 DDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEM 291
D D E RLL+ ++ G ++G +G I+ LR T I++ C +TD +
Sbjct: 142 DFDCE-----LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPQSTDRV 192
Query: 292 VQISGKPNVAKRALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMAD 343
V I GKP+ + + L+ ++P K + P P+ + + Y GG F
Sbjct: 193 VLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 252
Query: 344 MHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G + G P P Y D R G PPG+ G
Sbjct: 253 FPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 298
Score = 98 (39.6 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 440
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 441 QDQIQNAQYLLQN 453
Score = 63 (27.2 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++++
Sbjct: 410 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYAD 460
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 176 (67.0 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 68/256 (26%), Positives = 116/256 (45%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 158 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 213
Query: 322 PSSFP------QAYGGQNFHSPPAP--MADMHPLG--NSSWPARNSSLHGMPSTPWMGGY 371
P+S P QAY Q ++ P P + +H L + +P + P T +
Sbjct: 214 PASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGT-YPAAL 272
Query: 372 GDQ-PSRMGSGS-INSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGA 429
D S +G+ S +++ PP E++ + I C + +++Q +GA
Sbjct: 273 SDLLSSHLGTLSGLDASPPASTHELTIPNDL-IGCIIGRQGT-------KINEIRQMSGA 324
Query: 430 SIHVEDAPTDSDERVI 445
I + +A S ER I
Sbjct: 325 QIKIANATEGSSERQI 340
Score = 130 (50.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 49/210 (23%), Positives = 93/210 (44%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 123
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 177
Query: 534 VDIRGSSEHLISAHGTYQSFMTS----GQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQN 589
V I G+ + +I M G ++ +P P Y
Sbjct: 178 VTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST--PVIFAGGQAYTIQGQYAI 235
Query: 590 MNTQQ-SPYHRVNAQQSPYQNINPQQSSYP 618
+ Q + H++ QQ+P+ + ++P
Sbjct: 236 PHPDQLTKLHQLAMQQTPFPPLGQTNPAFP 265
Score = 120 (47.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 160 GAQVQVAGDMLPNSTERAVTISGTPDAI 187
Score = 102 (41.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ TD + +
Sbjct: 43 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK 102
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + ++ + +P KPP
Sbjct: 103 AFAM--IAYKFEEDIINSMSNSPATSKPP 129
Score = 94 (38.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 294 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 346
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 347 ANISLAQYLINARLTS 362
Score = 91 (37.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 97
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 175 (66.7 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 73/291 (25%), Positives = 127/291 (43%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 158 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 213
Query: 322 PSSFP------QAYGGQNFHSPPAP--MADMHPLG--NSSWPARNSSLHGMPSTPW-MGG 370
P+S P QAY Q ++ P P + +H L + +P + P +
Sbjct: 214 PASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHS 273
Query: 371 YGDQPSRMGSGS-INSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGA 429
+ + MG S +++ PP E++ + I C + +++Q +GA
Sbjct: 274 SEEAQNLMGQSSGLDASPPASTHELTIPNDL-IGCIIGRQGT-------KINEIRQMSGA 325
Query: 430 SIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTI 480
I + +A S ER I + P + ++ L TSE + GT+
Sbjct: 326 QIKIANATEGSSERQITITG-----TPANISLAQYLINARLTSEVTGMGTL 371
Score = 130 (50.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 49/210 (23%), Positives = 93/210 (44%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 123
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 177
Query: 534 VDIRGSSEHLISAHGTYQSFMTS----GQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQN 589
V I G+ + +I M G ++ +P P Y
Sbjct: 178 VTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST--PVIFAGGQAYTIQGQYAI 235
Query: 590 MNTQQ-SPYHRVNAQQSPYQNINPQQSSYP 618
+ Q + H++ QQ+P+ + ++P
Sbjct: 236 PHPDQLTKLHQLAMQQTPFPPLGQTNPAFP 265
Score = 120 (47.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 160 GAQVQVAGDMLPNSTERAVTISGTPDAI 187
Score = 102 (41.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ TD + +
Sbjct: 43 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK 102
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + ++ + +P KPP
Sbjct: 103 AFAM--IAYKFEEDIINSMSNSPATSKPP 129
Score = 94 (38.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 347
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 348 ANISLAQYLINARLTS 363
Score = 91 (37.1 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 97
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 172 (65.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 77/289 (26%), Positives = 120/289 (41%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 30 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 87
Query: 175 IIIYSSPTKIAKTQNKDDDSAAETKKESME-PHCAAQDALLKVHDRI--IEEDLFGGMAS 231
+ I + I + K T +E ++ P A L D + + + G S
Sbjct: 88 LSISADIETIGEILKK----IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG--S 141
Query: 232 DDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEM 291
D D E RLL+ ++ G ++G +G I+ LR T I++ C +TD +
Sbjct: 142 DFDCE-----LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRV 192
Query: 292 VQISGKPNVAKRALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMAD 343
V I GKP+ + + L+ ++P K + P P+ + + Y GG F
Sbjct: 193 VLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 252
Query: 344 MHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G + G P P Y D R G PPG+ G
Sbjct: 253 FPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 298
Score = 98 (39.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 440
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 441 QDQIQNAQYLLQN 453
Score = 67 (28.6 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 410 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 461
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 172 (65.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 77/289 (26%), Positives = 120/289 (41%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 30 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 87
Query: 175 IIIYSSPTKIAKTQNKDDDSAAETKKESME-PHCAAQDALLKVHDRI--IEEDLFGGMAS 231
+ I + I + K T +E ++ P A L D + + + G S
Sbjct: 88 LSISADIETIGEILKK----IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG--S 141
Query: 232 DDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEM 291
D D E RLL+ ++ G ++G +G I+ LR T I++ C +TD +
Sbjct: 142 DFDCE-----LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRV 192
Query: 292 VQISGKPNVAKRALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMAD 343
V I GKP+ + + L+ ++P K + P P+ + + Y GG F
Sbjct: 193 VLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 252
Query: 344 MHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G + G P P Y D R G PPG+ G
Sbjct: 253 FPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 298
Score = 98 (39.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 440
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 441 QDQIQNAQYLLQN 453
Score = 67 (28.6 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 410 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 461
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 172 (65.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 77/289 (26%), Positives = 120/289 (41%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 30 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 87
Query: 175 IIIYSSPTKIAKTQNKDDDSAAETKKESME-PHCAAQDALLKVHDRI--IEEDLFGGMAS 231
+ I + I + K T +E ++ P A L D + + + G S
Sbjct: 88 LSISADIETIGEILKK----IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG--S 141
Query: 232 DDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEM 291
D D E RLL+ ++ G ++G +G I+ LR T I++ C +TD +
Sbjct: 142 DFDCE-----LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRV 192
Query: 292 VQISGKPNVAKRALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMAD 343
V I GKP+ + + L+ ++P K + P P+ + + Y GG F
Sbjct: 193 VLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 252
Query: 344 MHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G + G P P Y D R G PPG+ G
Sbjct: 253 FPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 298
Score = 98 (39.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 440
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 441 QDQIQNAQYLLQN 453
Score = 67 (28.6 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 410 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 461
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 171 (65.3 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 73/267 (27%), Positives = 113/267 (42%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 33 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 90
Query: 175 IIIYSSPTKIAKTQNKDDDSAAETKKESME-PHCAAQDALLKVHDRI--IEEDLFGGMAS 231
+ I + I + K T +E ++ P A L D + + + G S
Sbjct: 91 LSISADIETIGEILKK----IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG--S 144
Query: 232 DDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEM 291
D D E RLL+ ++ G ++G +G I+ LR T I++ C +TD +
Sbjct: 145 DFDCE-----LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPQSTDRV 195
Query: 292 VQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSS 351
V I GKP+ + + L+ ++P K + P Y + M D
Sbjct: 196 VLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 255
Query: 352 WPARN-SSLHGMPSTPWMGGYGDQPSR 377
+P R MP P GG PSR
Sbjct: 256 FPMRGRGGFDRMP--PGRGGRPMPPSR 280
Score = 98 (39.6 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 369 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 421
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 422 QDQIQNAQYLLQN 434
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 140 (54.3 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 45/149 (30%), Positives = 71/149 (47%)
Query: 222 EEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281
EED+ M + +T RL+VP + G L+GK G I+ +R TGA ++V D L
Sbjct: 41 EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA-GDML 99
Query: 282 PPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP-PSSFPQAY-GGQNF 334
P +T+ + I+G P + ++ ++ ++P K +P PSS P + GGQ+
Sbjct: 100 PN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDR 156
Query: 335 HSPPAPMADMHPLGNSSWPARNSSLHGMP 363
+S + A P S N L G P
Sbjct: 157 YSTGSDSASF-PHTTPSM-CLNPDLEGPP 183
Score = 117 (46.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 113 NSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSE 171
+SS S S+P T+ R++ P+ + G +IGK G +K +RE T A++ VA D +P S
Sbjct: 45 SSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST 103
Query: 172 ERVIIIYSSPTKI 184
ER I I P I
Sbjct: 104 ERAITIAGIPQSI 116
Score = 104 (41.7 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 462 DAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVK 521
D + N T+ + + +T RL+VP+S+ G ++G+GG I E+R T A ++V G
Sbjct: 43 DISSSMTNSTA--ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG---- 96
Query: 522 LQDPHPGSSECIVDIRGSSEHLI 544
D P S+E + I G + +I
Sbjct: 97 --DMLPNSTERAITIAGIPQSII 117
Score = 102 (41.0 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I++ A+ P +TD V
Sbjct: 240 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI--AN---PVEGSTDRQVT 294
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 295 ITGSAASISLAQYLINVRL 313
Score = 95 (38.5 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 245 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 297
Query: 539 SS 540
S+
Sbjct: 298 SA 299
Score = 75 (31.5 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSE 268
N T+T RLL+ VG ++GK+G+ ++++R E
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREE 42
Score = 67 (28.6 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREE 156
R+L +++G +IGK G VK +REE
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREE 42
Score = 64 (27.6 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 32/135 (23%), Positives = 55/135 (40%)
Query: 359 LHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXF 418
+HG +G G+ +M I+S +++++ A
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGC 79
Query: 419 NVKQLQQETGASIHVE-DAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+K++++ TGA + V D +S ER I + G+ P+S I+ + Q+ E K
Sbjct: 80 KIKEIRESTGAQVQVAGDMLPNSTERAITIA---GI--PQS-IIECVKQICVVMLESPPK 133
Query: 478 G-TITTRLLVPSSKV 491
G TI R SS V
Sbjct: 134 GVTIPYRPKPSSSPV 148
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 171 (65.3 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 66/256 (25%), Positives = 114/256 (44%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 158 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 213
Query: 322 PSSFP------QAYGGQNFHSPPAP--MADMHPLG--NSSWPARNSSLHGMPSTPW-MGG 370
P+S P QAY Q ++ P P + +H L + +P + P +
Sbjct: 214 PASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHS 273
Query: 371 YGDQPSRMGSGS-INSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGA 429
+ + MG S +++ PP E++ + I C + +++Q +GA
Sbjct: 274 SEEAQNLMGQSSGLDASPPASTHELTIPNDL-IGCIIGRQGT-------KINEIRQMSGA 325
Query: 430 SIHVEDAPTDSDERVI 445
I + +A S ER I
Sbjct: 326 QIKIANATEGSSERQI 341
Score = 130 (50.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 49/210 (23%), Positives = 93/210 (44%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 123
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 177
Query: 534 VDIRGSSEHLISAHGTYQSFMTS----GQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQN 589
V I G+ + +I M G ++ +P P Y
Sbjct: 178 VTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST--PVIFAGGQAYTIQGQYAI 235
Query: 590 MNTQQ-SPYHRVNAQQSPYQNINPQQSSYP 618
+ Q + H++ QQ+P+ + ++P
Sbjct: 236 PHPDQLTKLHQLAMQQTPFPPLGQTNPAFP 265
Score = 120 (47.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 160 GAQVQVAGDMLPNSTERAVTISGTPDAI 187
Score = 107 (42.7 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 226 FGGMASDDDNE---NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---D 279
FGG +E N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +
Sbjct: 29 FGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPE 88
Query: 280 RLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
R+ TD + + +A + ++ + +P KPP
Sbjct: 89 RIVTITGPTDAIFKAFAM--IAYKFEEDIINSMSNSPATSKPP 129
Score = 94 (38.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 347
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 348 ANISLAQYLINARLTS 363
Score = 91 (37.1 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 97
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 171 (65.3 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 66/256 (25%), Positives = 114/256 (44%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 158 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 213
Query: 322 PSSFP------QAYGGQNFHSPPAP--MADMHPLG--NSSWPARNSSLHGMPSTPW-MGG 370
P+S P QAY Q ++ P P + +H L + +P + P +
Sbjct: 214 PASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHS 273
Query: 371 YGDQPSRMGSGS-INSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGA 429
+ + MG S +++ PP E++ + I C + +++Q +GA
Sbjct: 274 SEEAQNLMGQSSGLDASPPASTHELTIPNDL-IGCIIGRQGT-------KINEIRQMSGA 325
Query: 430 SIHVEDAPTDSDERVI 445
I + +A S ER I
Sbjct: 326 QIKIANATEGSSERQI 341
Score = 130 (50.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 49/210 (23%), Positives = 93/210 (44%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 123
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 177
Query: 534 VDIRGSSEHLISAHGTYQSFMTS----GQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQN 589
V I G+ + +I M G ++ +P P Y
Sbjct: 178 VTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST--PVIFAGGQAYTIQGQYAI 235
Query: 590 MNTQQ-SPYHRVNAQQSPYQNINPQQSSYP 618
+ Q + H++ QQ+P+ + ++P
Sbjct: 236 PHPDQLTKLHQLAMQQTPFPPLGQTNPAFP 265
Score = 120 (47.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 160 GAQVQVAGDMLPNSTERAVTISGTPDAI 187
Score = 107 (42.7 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 226 FGGMASDDDNE---NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---D 279
FGG +E N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +
Sbjct: 29 FGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPE 88
Query: 280 RLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
R+ TD + + +A + ++ + +P KPP
Sbjct: 89 RIVTITGPTDAIFKAFAM--IAYKFEEDIINSMSNSPATSKPP 129
Score = 94 (38.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 347
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 348 ANISLAQYLINARLTS 363
Score = 91 (37.1 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 97
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 171 (65.3 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 66/256 (25%), Positives = 114/256 (44%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 158 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 213
Query: 322 PSSFP------QAYGGQNFHSPPAP--MADMHPLG--NSSWPARNSSLHGMPSTPW-MGG 370
P+S P QAY Q ++ P P + +H L + +P + P +
Sbjct: 214 PASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHS 273
Query: 371 YGDQPSRMGSGS-INSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGA 429
+ + MG S +++ PP E++ + I C + +++Q +GA
Sbjct: 274 SEEAQNLMGQSSGLDASPPASTHELTIPNDL-IGCIIGRQGT-------KINEIRQMSGA 325
Query: 430 SIHVEDAPTDSDERVI 445
I + +A S ER I
Sbjct: 326 QIKIANATEGSSERQI 341
Score = 130 (50.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 49/210 (23%), Positives = 93/210 (44%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 123
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 177
Query: 534 VDIRGSSEHLISAHGTYQSFMTS----GQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQN 589
V I G+ + +I M G ++ +P P Y
Sbjct: 178 VTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST--PVIFAGGQAYTIQGQYAI 235
Query: 590 MNTQQ-SPYHRVNAQQSPYQNINPQQSSYP 618
+ Q + H++ QQ+P+ + ++P
Sbjct: 236 PHPDQLTKLHQLAMQQTPFPPLGQTNPAFP 265
Score = 120 (47.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 160 GAQVQVAGDMLPNSTERAVTISGTPDAI 187
Score = 102 (41.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ TD + +
Sbjct: 43 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK 102
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + ++ + +P KPP
Sbjct: 103 AFAM--IAYKFEEDIINSMSNSPATSKPP 129
Score = 94 (38.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 347
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 348 ANISLAQYLINARLTS 363
Score = 91 (37.1 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 97
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 167 (63.8 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 64/246 (26%), Positives = 109/246 (44%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 126 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 181
Query: 322 PSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLH--GMPSTPWMGGYGDQPSRMG 379
P+S P + G ++ A HP + + LH M TP+ P+ G
Sbjct: 182 PASTPVIFAGGQAYTIQGQYAIPHP-------DQLTKLHQLAMQQTPFPPLGQTNPAFPG 234
Query: 380 SGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTD 439
+++ PP E++ + I C + +++Q +GA I + +A
Sbjct: 235 ---LDASPPASTHELTIPNDL-IGCIIGRQGT-------KINEIRQMSGAQIKIANATEG 283
Query: 440 SDERVI 445
S ER I
Sbjct: 284 SSERQI 289
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 55/240 (22%), Positives = 103/240 (42%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ + + ER++ + + ++ + D I + N S
Sbjct: 36 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN--SP 91
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ K +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 92 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DMLPNSTERA 145
Query: 534 VDIRGSSEHLISAHGTYQSFMTS----GQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQN 589
V I G+ + +I M G ++ +P P Y
Sbjct: 146 VTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST--PVIFAGGQAYTIQGQYAI 203
Query: 590 MNTQQ-SPYHRVNAQQSPYQNINPQQSSYP-MHTHQGAGTNPHITPTQXXXXXXXAQQGT 647
+ Q + H++ QQ+P+ + ++P + A T+ +T +QGT
Sbjct: 204 PHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDASPPASTH-ELTIPNDLIGCIIGRQGT 262
Score = 120 (47.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 128 GAQVQVAGDMLPNSTERAVTISGTPDAI 155
Score = 102 (41.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK+G+ ++++R E+GA I + +R+ TD + +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK 70
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + ++ + +P KPP
Sbjct: 71 AFAM--IAYKFEEDIINSMSNSPATSKPP 97
Score = 94 (38.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 243 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 295
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 296 ANISLAQYLINARLTS 311
Score = 91 (37.1 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 65
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 129 (50.5 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 43/134 (32%), Positives = 68/134 (50%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
+EEDL +A+ +T RL++P + G L+GK G I+ +R +TGA ++V D
Sbjct: 92 LEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVA-GDL 150
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK--P--PSSFPQAY---GGQN 333
LP +T+ V ISG + + + + T++ ++P K P PS P A G Q
Sbjct: 151 LPN---STERGVTISGSQDAIIQCVKLICTVILESPPKGATIPYRPSPAPGAVLLAGNQV 207
Query: 334 FHSPPAPMADMHPL 347
F + + A HPL
Sbjct: 208 FET--SEFAS-HPL 218
Score = 129 (50.5 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 43/160 (26%), Positives = 82/160 (51%)
Query: 392 GEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSDERVIRAS-AF 450
G ++ ++++L VK++++E+ A I++ + ER+I + A
Sbjct: 21 GGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITITGAT 78
Query: 451 EGLWNPRSQTIDAILQLQNKTSEFSEKGTITT------RLLVPSSKVGCILGQGGHVINE 504
E ++ R+ T+ I +L+ + GT+T+ RL++P+S+ G ++G+GG I E
Sbjct: 79 ECVF--RAFTMITI-KLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKE 135
Query: 505 MRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLI 544
+R +T A ++V G D P S+E V I GS + +I
Sbjct: 136 IREKTGAQVQVAG------DLLPNSTERGVTISGSQDAII 169
Score = 108 (43.1 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 123 SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSP 181
S+P T+ R++ P+ + G +IGK G+ +K +RE+T A++ VA D +P S ER + I S
Sbjct: 107 SKPPVTL-RLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQ 165
Query: 182 TKI 184
I
Sbjct: 166 DAI 168
Score = 106 (42.4 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 34/136 (25%), Positives = 64/136 (47%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
++ + T + LL+PN+++G ++G++G I +R +GA I++ +L +D V
Sbjct: 274 ESSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKI--GSQLDS---TSDRHVT 328
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWP 353
I+G P A Y +++ L + + SS + AP A SS
Sbjct: 329 ITGSPISINLAQYLITSCL-ETAKSTAQSSSMSTPVDLNMSFTQTAPPA-------SSSA 380
Query: 354 ARNSSLHGMPSTPWMG 369
A +++ G+P P +G
Sbjct: 381 AALAAMGGLPHAPILG 396
Score = 101 (40.6 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 117 EQSFGNSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERV 174
EQ FG+ T+ R+L +++G +IGK G VK +REE+ A+I +++ GS ER+
Sbjct: 15 EQDFGDGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISE---GSCPERI 71
Query: 175 III 177
I I
Sbjct: 72 ITI 74
Score = 95 (38.5 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
D N T+T RLL+ VG ++GK+G+ ++R+R E+ A I +
Sbjct: 20 DGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINI 62
Score = 79 (32.9 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
S T + LL+P+ +G I+G+ G INE+R+ V GA++K+ +S+ V
Sbjct: 275 SSSQTASQELLIPNDLIGSIIGRQGTKINEIRQ-------VSGAQIKIGSQLDSTSDRHV 327
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSMKVQPSS 566
I GS + A S + + +S Q SS
Sbjct: 328 TITGSPISINLAQYLITSCLETAKST-AQSSS 358
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 147 (56.8 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 43/141 (30%), Positives = 68/141 (48%)
Query: 222 EEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281
EED+ M + +T RL+ P + G L+GK G I+ +R TGA ++V D L
Sbjct: 83 EEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVA-GDLL 141
Query: 282 PPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK--PPSSFPQAYGGQNFHSPP- 338
P +T+ V ISG P+ + + + T++ ++P K P P A GG + P
Sbjct: 142 PD---STERAVTISGTPHAITQCVKHICTVMLESPPKGATIPYRPKPSAGGGHTVLTQPH 198
Query: 339 APMADMHPLGNSSWPARNSSL 359
A A P G + P ++ S+
Sbjct: 199 AATAFAIP-GQFAIPPQDVSV 218
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 40/132 (30%), Positives = 70/132 (53%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRAS-AFEGLWNPRSQTI-----DAILQLQNKTSE 473
VK++++E+GA I++ D S ER++ + A E ++ + D + + N T
Sbjct: 39 VKKMREESGARINISDG--SSPERIVTITGASEVIFKAFAMIAEKFEEDILASMINST-- 94
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ + +T RL+ P+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 95 VTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAG------DLLPDSTERA 148
Query: 534 VDIRGSSEHLIS 545
V I G+ H I+
Sbjct: 149 VTISGTP-HAIT 159
Score = 113 (44.8 bits), Expect = 0.00071, P = 0.00071
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 123 SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSP 181
S+P T+ R++ P+ + G +IGK G+ +K +RE T A++ VA D +P S ER + I +P
Sbjct: 97 SRPPVTL-RLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDSTERAVTISGTP 155
Query: 182 TKIAK 186
I +
Sbjct: 156 HAITQ 160
Score = 98 (39.6 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAK 186
R+L +++G +IGK G VK +REE+ A+I ++D S ER++ I + I K
Sbjct: 20 RLLMHGKEVGSIIGKKGETVKKMREESGARINISDG--SSPERIVTITGASEVIFK 73
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 126 (49.4 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
++EDL A+ + +T RL++P + G L+GK G I+ +R TGA ++V D
Sbjct: 83 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA-GDL 141
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
LP +T+ V +SG P+ + ++ ++ ++P K
Sbjct: 142 LPN---STERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 116 (45.9 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 121 GN-SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIY 178
GN S+P T+ R++ P+ + G +IGKAG +K +RE T A++ VA D +P S ER + +
Sbjct: 95 GNVSRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Query: 179 SSPTKI 184
P I
Sbjct: 154 GVPDAI 159
Score = 93 (37.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
D T + LVPN+++GC++G++G I +R +GA+I++
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 277
Score = 93 (37.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+T RL++P+S+ G ++G+ G I E+R T A ++V G D P S+E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG------DLLPNSTERAVTVSGV 155
Query: 540 SEHLI 544
+ +I
Sbjct: 156 PDAII 160
Score = 90 (36.7 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 86 (35.3 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 227 GGMASDDDNENS-TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
GG+ +++ E S T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 6 GGL--EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
Score = 83 (34.3 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 476 EKGTITT--RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ GT T+ LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERH 288
Query: 534 VDIRGSSEHLISAHGTYQSFMTSG 557
V I GS + A ++ +G
Sbjct: 289 VTITGSPVSIALAQYLITAWAAAG 312
Score = 52 (23.4 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 388 PGQMGEVSAE-FSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVE-DAPTDSDERVI 445
P G VS +++++ A +K++++ TGA + V D +S ER +
Sbjct: 91 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 150
Query: 446 RAS 448
S
Sbjct: 151 TVS 153
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 107 (42.7 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 472 SEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSE 531
S +S+ ITT++ +P G I+G+GG I ++R + GA +K+ +P GS +
Sbjct: 346 SSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLQGSED 398
Query: 532 CIVDIRGSSEHLISAHGTYQS 552
I+ I G+ + + +A Q+
Sbjct: 399 RIITITGTQDQIQNAQYLLQN 419
Score = 101 (40.6 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 42/158 (26%), Positives = 66/158 (41%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLL+ ++ G ++G +G I+ LR T I++ C +TD +V + GK
Sbjct: 124 RLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQEC----CPQSTDRVVLVGGKAERVV 179
Query: 303 RALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMAD---MHPLGNSSWPARNSS- 358
+ + + L+ + P K + P Y + M + P+G S R+SS
Sbjct: 180 QCIKTMLELIVEAPIKGRAQQYDPNFYDETYDYGGFGVMYEERGRRPMGGFSSRGRSSSG 239
Query: 359 -LHGMPSTPWMGGYGDQPSRMGSGSIN---SCPPGQMG 392
MPS GG+ Q SR I+ PP Q G
Sbjct: 240 GFDRMPSGGRGGGHHMQ-SRRDYDDISPRRGPPPSQRG 276
Score = 101 (40.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 26/88 (29%), Positives = 50/88 (56%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG +S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 343 GGRSSYSDGP--VITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLQG 395
Query: 287 NTDEMVQISGKPNVAKRALYEV-STLLH 313
+ D ++ I+G + + A Y + ++ LH
Sbjct: 396 SEDRIITITGTQDQIQNAQYLLQNSALH 423
Score = 94 (38.1 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 108 KGNWSNSSREQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVAD 165
K + +S E+ + S+ +D + RIL S+ G VIGK G +K+LR + A ++V D
Sbjct: 21 KRSADDSEEEKPYKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPD 80
Query: 166 TIPGSEERVIIIYSS-PT 182
+ ER++ + + PT
Sbjct: 81 S--SGPERILSVSADIPT 96
Score = 73 (30.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L G +IG G +K LR+ TQ I + + P S +RV+++ ++
Sbjct: 120 DCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQSTDRVVLVGGKAERVV 179
Query: 186 K 186
+
Sbjct: 180 Q 180
Score = 66 (28.3 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQI 294
N + + R+L+ + G ++GK G I+ LR++ A + V P + + ++ +
Sbjct: 38 NSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSV-------PDSSGPERILSV 90
Query: 295 SGK-PNVAKRALYEVSTL 311
S P VA+ L + TL
Sbjct: 91 SADIPTVAEILLKIIPTL 108
Score = 60 (26.2 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVI 445
+KQ++ E+GASI +++ S++R+I
Sbjct: 376 IKQIRHESGASIKIDEPLQGSEDRII 401
Score = 41 (19.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 42 TVSLILL--IQTFSVFIYLFSISFSCAFHLLSH 72
TV+ ILL I T + + + F C LL H
Sbjct: 96 TVAEILLKIIPTLEEYQHHKGVDFDCELRLLIH 128
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 126 (49.4 bits), Expect = 7.2e-14, Sum P(3) = 7.2e-14
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
++EDL A+ + +T RL++P + G L+GK G I+ +R TGA ++V D
Sbjct: 83 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA-GDL 141
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
LP +T+ V +SG P+ + ++ ++ ++P K
Sbjct: 142 LPN---STERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 116 (45.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 121 GN-SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIY 178
GN S+P T+ R++ P+ + G +IGKAG +K +RE T A++ VA D +P S ER + +
Sbjct: 95 GNVSRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Query: 179 SSPTKI 184
P I
Sbjct: 154 GVPDAI 159
Score = 99 (39.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 34/138 (24%), Positives = 59/138 (42%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + LVPN+++GC++G++G I +R +GA+I++ ++ + V
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAG---ERHVT 290
Query: 294 ISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG--NS 350
I+G P A Y ++ L PSS P SPP P G +
Sbjct: 291 ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP--FSPPLTALPTAPPGLLGT 348
Query: 351 SWPARNSSLHGMPSTPWM 368
+ S+ G+ P++
Sbjct: 349 PYAISLSNFIGLKPMPFL 366
Score = 93 (37.8 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+T RL++P+S+ G ++G+ G I E+R T A ++V G D P S+E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG------DLLPNSTERAVTVSGV 155
Query: 540 SEHLI 544
+ +I
Sbjct: 156 PDAII 160
Score = 90 (36.7 bits), Expect = 7.2e-14, Sum P(3) = 7.2e-14
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 86 (35.3 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 227 GGMASDDDNENS-TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
GG+ +++ E S T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 6 GGL--EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
Score = 82 (33.9 bits), Expect = 7.2e-14, Sum P(3) = 7.2e-14
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 476 EKGTITT--RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ GT T+ LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERH 288
Query: 534 VDIRGS 539
V I GS
Sbjct: 289 VTITGS 294
Score = 52 (23.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 388 PGQMGEVSAE-FSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVE-DAPTDSDERVI 445
P G VS +++++ A +K++++ TGA + V D +S ER +
Sbjct: 91 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 150
Query: 446 RAS 448
S
Sbjct: 151 TVS 153
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 126 (49.4 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
++EDL A+ + +T RL++P + G L+GK G I+ +R TGA ++V D
Sbjct: 83 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA-GDL 141
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
LP +T+ V +SG P+ + ++ ++ ++P K
Sbjct: 142 LPN---STERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 116 (45.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 121 GN-SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIY 178
GN S+P T+ R++ P+ + G +IGKAG +K +RE T A++ VA D +P S ER + +
Sbjct: 95 GNVSRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Query: 179 SSPTKI 184
P I
Sbjct: 154 GVPDAI 159
Score = 100 (40.3 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 34/138 (24%), Positives = 59/138 (42%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + LVPN+++GC++G++G I +R +GA+I++ ++ + V
Sbjct: 237 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAG---ERHVT 291
Query: 294 ISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG--NS 350
I+G P A Y ++ L PSS P SPP P G +
Sbjct: 292 ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPTDLPAP--FSPPLTALPTAPPGLLGT 349
Query: 351 SWPARNSSLHGMPSTPWM 368
+ S+ G+ P++
Sbjct: 350 PYAISLSNFIGLKPVPFL 367
Score = 93 (37.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+T RL++P+S+ G ++G+ G I E+R T A ++V G D P S+E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG------DLLPNSTERAVTVSGV 155
Query: 540 SEHLI 544
+ +I
Sbjct: 156 PDAII 160
Score = 90 (36.7 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 83 (34.3 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 232 DDDNENS-TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+++ E S T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
Score = 82 (33.9 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 476 EKGTITT--RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ GT T+ LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E
Sbjct: 237 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERH 289
Query: 534 VDIRGS 539
V I GS
Sbjct: 290 VTITGS 295
Score = 52 (23.4 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 388 PGQMGEVSAE-FSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVE-DAPTDSDERVI 445
P G VS +++++ A +K++++ TGA + V D +S ER +
Sbjct: 91 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 150
Query: 446 RAS 448
S
Sbjct: 151 TVS 153
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 110 (43.8 bits), Expect = 7.8e-14, Sum P(3) = 7.8e-14
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
++SREQ G+SQP D R+L P++ +G +IGK G +K+L ++TQ+K+ +
Sbjct: 147 HASREQGSSPGGSSQPKQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKE 206
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ I I+++P
Sbjct: 207 NAGAAEKPITIHATP 221
Score = 103 (41.3 bits), Expect = 7.8e-14, Sum P(3) = 7.8e-14
Identities = 53/218 (24%), Positives = 91/218 (41%)
Query: 353 PARNSSLHGMPSTPWMGGYGDQPSRMGS-GSINSCPPGQMGEVSAEFSMKILCSAXXXXX 411
P N S G+ ST G PS G+ G+ + P ++ + + +
Sbjct: 337 PGLNLSALGIFST----GLSMLPSSAGARGAAAAAPYHPFAQLPEQEVVNLFIPTQAVGA 392
Query: 412 XXXXXXFNVKQLQQETGASIHVEDAP-TDSDER-VIRASAFEGLWNPRSQTIDAILQLQN 469
++KQL + GASI + A D+ ER VI E + + + I L+ +N
Sbjct: 393 IIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGR-IFGKLKEEN 451
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGS 529
+ E+ + + VPS G ++G+GG +NE++ T A++ V + Q P +
Sbjct: 452 FFNP-KEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVP----RDQTPDE-N 505
Query: 530 SECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
E IV I G H ++ + Q +K Q +
Sbjct: 506 EEVIVKIIG---HFFASQTAQRKIREIVQQVKQQEQKH 540
Score = 96 (38.9 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
L +P VG ++GK+G I++L GA+I++ PA+ P A T+ MV I+G P +
Sbjct: 383 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEG--PDA--TERMVIITGPPEAQFK 438
Query: 304 A 304
A
Sbjct: 439 A 439
Score = 92 (37.4 bits), Expect = 7.8e-14, Sum P(3) = 7.8e-14
Identities = 21/89 (23%), Positives = 39/89 (43%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N++VG L+GK G ++++ +TG I + P L N +
Sbjct: 239 ADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLT--IYNPER 296
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ + G A E+ L + D
Sbjct: 297 TITVKGSTEACSNAEVEIMKKLREAYEND 325
Score = 82 (33.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 35/139 (25%), Positives = 62/139 (44%)
Query: 183 KIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA 242
KIA + D A E P A A ++ ++ EE+ F + E + A
Sbjct: 413 KIAPAEGPD---ATERMVIITGPPEAQFKAQGRIFGKLKEENFF------NPKEEVKLEA 463
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGK---PN 299
+ VP+ G ++GK G + L++ T A + ++P D+ P N + +V+I G
Sbjct: 464 HIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVKIIGHFFASQ 520
Query: 300 VAKRALYEVSTLLHQNPRK 318
A+R + E+ + Q +K
Sbjct: 521 TAQRKIREIVQQVKQQEQK 539
Score = 67 (28.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
R+LVP VG ++GK G I+ L +T + + +
Sbjct: 170 RMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDI 202
Score = 67 (28.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSS 180
+IL + +G +IGK G +K + ++T KIT++ D + ER I + S
Sbjct: 251 KILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPERTITVKGS 303
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 126 (49.4 bits), Expect = 9.2e-14, Sum P(3) = 9.2e-14
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
++EDL A+ + +T RL++P + G L+GK G I+ +R TGA ++V D
Sbjct: 83 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA-GDL 141
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
LP +T+ V +SG P+ + ++ ++ ++P K
Sbjct: 142 LPN---STERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 116 (45.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 121 GN-SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIY 178
GN S+P T+ R++ P+ + G +IGKAG +K +RE T A++ VA D +P S ER + +
Sbjct: 95 GNVSRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Query: 179 SSPTKI 184
P I
Sbjct: 154 GVPDAI 159
Score = 98 (39.6 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 33/138 (23%), Positives = 58/138 (42%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + LVPN+++GC++G++G I +R +GA+I++ ++ + V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAG---ERHVT 290
Query: 294 ISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG--NS 350
I+G P A Y ++ L P S P SPP P G +
Sbjct: 291 ITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAP--FSPPLTALPTAPPGLLGT 348
Query: 351 SWPARNSSLHGMPSTPWM 368
+ S+ G+ P++
Sbjct: 349 PYAISLSNFIGLKPVPFL 366
Score = 93 (37.8 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+T RL++P+S+ G ++G+ G I E+R T A ++V G D P S+E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG------DLLPNSTERAVTVSGV 155
Query: 540 SEHLI 544
+ +I
Sbjct: 156 PDAII 160
Score = 90 (36.7 bits), Expect = 9.2e-14, Sum P(3) = 9.2e-14
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 83 (34.3 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 232 DDDNENS-TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+++ E S T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
Score = 81 (33.6 bits), Expect = 9.2e-14, Sum P(3) = 9.2e-14
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E V I G
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERHVTITG 293
Query: 539 S 539
S
Sbjct: 294 S 294
Score = 52 (23.4 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 388 PGQMGEVSAE-FSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVE-DAPTDSDERVI 445
P G VS +++++ A +K++++ TGA + V D +S ER +
Sbjct: 91 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 150
Query: 446 RAS 448
S
Sbjct: 151 TVS 153
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 126 (49.4 bits), Expect = 9.2e-14, Sum P(3) = 9.2e-14
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
++EDL A+ + +T RL++P + G L+GK G I+ +R TGA ++V D
Sbjct: 83 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA-GDL 141
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
LP +T+ V +SG P+ + ++ ++ ++P K
Sbjct: 142 LPN---STERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 116 (45.9 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 121 GN-SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIY 178
GN S+P T+ R++ P+ + G +IGKAG +K +RE T A++ VA D +P S ER + +
Sbjct: 95 GNVSRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Query: 179 SSPTKI 184
P I
Sbjct: 154 GVPDAI 159
Score = 94 (38.1 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 32/133 (24%), Positives = 57/133 (42%)
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
T + LVPN+++GC++G++G I +R +GA+I++ ++ + V I+G P
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAG---ERHVTITGSP 295
Query: 299 NVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG--NSSWPAR 355
A Y ++ L P S P SPP P G + +
Sbjct: 296 VSIALAQYLITACLETAKSTSGGTPGSAPTDLPAP--FSPPLTALPTAPPGLLGTPYAIS 353
Query: 356 NSSLHGMPSTPWM 368
S+ G+ P++
Sbjct: 354 LSNFIGLKPVPFL 366
Score = 93 (37.8 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+T RL++P+S+ G ++G+ G I E+R T A ++V G D P S+E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG------DLLPNSTERAVTVSGV 155
Query: 540 SEHLI 544
+ +I
Sbjct: 156 PDAII 160
Score = 90 (36.7 bits), Expect = 9.2e-14, Sum P(3) = 9.2e-14
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 83 (34.3 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 232 DDDNENS-TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+++ E S T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
Score = 81 (33.6 bits), Expect = 9.2e-14, Sum P(3) = 9.2e-14
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E V I G
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERHVTITG 293
Query: 539 S 539
S
Sbjct: 294 S 294
Score = 52 (23.4 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 388 PGQMGEVSAE-FSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVE-DAPTDSDERVI 445
P G VS +++++ A +K++++ TGA + V D +S ER +
Sbjct: 91 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 150
Query: 446 RAS 448
S
Sbjct: 151 TVS 153
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 105 (42.0 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 40/157 (25%), Positives = 64/157 (40%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLL+ ++ G ++G +G I+ LR T I++ C +TD +V I GKP+
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 176
Query: 303 RALYEVSTLLHQNPRKDK--P--PSSFPQAY--GGQNFHSPPAPMADMHPL-GNSSWPAR 355
+ + L+ ++P K + P P+ + + Y GG P+ G +
Sbjct: 177 ECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMFDDRRGRPVGFPMRGRGGFDRM 236
Query: 356 NSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G P P Y D R G PPG+ G
Sbjct: 237 PPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 270
Score = 103 (41.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 338 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLEG 392
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 393 SEDRIITITGTQDQIQNAQYLLQNSVKQ 420
Score = 98 (39.6 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 351 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 403
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 404 QDQIQNAQYLLQN 416
Score = 97 (39.2 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 27 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 84
Query: 175 IIIYSSPTKIAKTQNK 190
+ I + I + K
Sbjct: 85 LSISADIETIGEILKK 100
Score = 91 (37.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L GG+IG G +K LRE TQ I + + P S +RV++I P ++
Sbjct: 117 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVV 176
Query: 186 K 186
+
Sbjct: 177 E 177
Score = 67 (28.6 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 373 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 424
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 125 (49.1 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
++EDL A+ +T RL++P + G L+GK G I+ +R TGA ++V D
Sbjct: 83 LDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA-GDL 141
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
LP +T+ V +SG P+ + ++ ++ ++P K
Sbjct: 142 LPN---STERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 113 (44.8 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 123 SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSP 181
S+P T+ R++ P+ + G +IGKAG +K +RE T A++ VA D +P S ER + + P
Sbjct: 98 SRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVP 156
Query: 182 TKI 184
I
Sbjct: 157 DAI 159
Score = 97 (39.2 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 35/138 (25%), Positives = 60/138 (43%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + LVPN+++GC++G++G I +R +GA+I++ ++ + V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAG---ERHVT 290
Query: 294 ISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG--NS 350
I+G P A Y ++ L P S P A F SPP P G +
Sbjct: 291 ITGSPVSIALAQYLITACLETAKSTSGGTPGSAP-ADLPTPF-SPPLTALPTAPPGLLGT 348
Query: 351 SWPARNSSLHGMPSTPWM 368
+ S+ G+ P++
Sbjct: 349 PYAISLSNFIGLKPVPFL 366
Score = 90 (36.7 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 83 (34.3 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 232 DDDNENS-TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+++ E S T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
Score = 81 (33.6 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E V I G
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERHVTITG 293
Query: 539 S 539
S
Sbjct: 294 S 294
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 125 (49.1 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
++EDL A+ +T RL++P + G L+GK G I+ +R TGA ++V D
Sbjct: 83 LDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA-GDL 141
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
LP +T+ V +SG P+ + ++ ++ ++P K
Sbjct: 142 LPN---STERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 113 (44.8 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 123 SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSP 181
S+P T+ R++ P+ + G +IGKAG +K +RE T A++ VA D +P S ER + + P
Sbjct: 98 SRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVP 156
Query: 182 TKI 184
I
Sbjct: 157 DAI 159
Score = 97 (39.2 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 35/138 (25%), Positives = 60/138 (43%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + LVPN+++GC++G++G I +R +GA+I++ ++ + V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAG---ERHVT 290
Query: 294 ISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG--NS 350
I+G P A Y ++ L P S P A F SPP P G +
Sbjct: 291 ITGSPVSIALAQYLITACLETAKSTSGGTPGSAP-ADLPTPF-SPPLTALPTAPPGLLGT 348
Query: 351 SWPARNSSLHGMPSTPWM 368
+ S+ G+ P++
Sbjct: 349 PYAISLSNFIGLKPVPFL 366
Score = 90 (36.7 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 82 (33.9 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
Score = 81 (33.6 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E V I G
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERHVTITG 293
Query: 539 S 539
S
Sbjct: 294 S 294
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 102 (41.0 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 40/158 (25%), Positives = 64/158 (40%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLL+ ++ G ++G +G I+ LR T I++ C +TD +V I GKP+
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 176
Query: 303 RALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMADMHPLGNSSWPA 354
+ + L+ ++P K + P P+ + + Y GG F G +
Sbjct: 177 ECIKIILDLIFESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDR 236
Query: 355 RNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
+ G P P Y D R G PPG+ G
Sbjct: 237 MPPNRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 271
Score = 102 (41.0 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 339 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLEG 393
Query: 287 NTDEMVQISGKPNVAKRALY 306
+ D ++ I+G + + A Y
Sbjct: 394 SEDRIITITGTQDQIQNAQY 413
Score = 99 (39.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 27 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 84
Query: 175 IIIYSSPTKIAKTQNK 190
+ I + I + K
Sbjct: 85 LSISADTETIGEILKK 100
Score = 98 (39.6 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 404
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 405 QDQIQNAQYLLQN 417
Score = 91 (37.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L GG+IG G +K LRE TQ I + + P S +RV++I P ++
Sbjct: 117 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVV 176
Query: 186 K 186
+
Sbjct: 177 E 177
Score = 60 (26.2 bits), Expect = 9.2e-10, Sum P(3) = 9.2e-10
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVI 445
+KQ++ E+GASI +++ S++R+I
Sbjct: 374 IKQIRHESGASIKIDEPLEGSEDRII 399
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 126 (49.4 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 40/154 (25%), Positives = 78/154 (50%)
Query: 211 DALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETG 270
D + K + I+ L ++D+ E+ I+ LL+P++++GC++GKRG ++ + +
Sbjct: 121 DDVAKAYGMIVRA-LLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSRLREIEDLSA 179
Query: 271 ANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVS-TLLH---QNPRKDKPPSSFP 326
A + P L ++ D ++ I+G P+ A + +S TLL+ ++P+K+ S +
Sbjct: 180 AKLFASPNQLL----LSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIY- 234
Query: 327 QAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLH 360
Y F+S + D H N+ + RN H
Sbjct: 235 --YQPTQFNSV---LID-HSQPNTIFHQRNHQYH 262
Score = 102 (41.0 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 104 VGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV 163
V +K + S+S + ++ P+D R+LC + ++G G + ++ ET A+I +
Sbjct: 44 VALKDAD-SHSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINI 102
Query: 164 ADTIPGSEERVIIIYSSPTKIAK 186
++ I G ER++ + + +AK
Sbjct: 103 SNNIRGVPERIVYVRGTCDDVAK 125
Score = 68 (29.0 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+ + + VG ++G+ G IN ++ T G + +QDP GSSE + IRG+
Sbjct: 331 VQQEIFIDEKFVGNVIGKDGKHINSVKEST-------GCSIIIQDPVEGSSERRLTIRGT 383
Score = 44 (20.5 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDER 443
++ +++ TG SI ++D S ER
Sbjct: 352 HINSVKESTGCSIIIQDPVEGSSER 376
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 103 (41.3 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 339 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLEG 393
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 394 SEDRIITITGTQDQIQNAQYLLQNSVKQ 421
Score = 102 (41.0 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 40/158 (25%), Positives = 64/158 (40%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLL+ ++ G ++G +G I+ LR T I++ C +TD +V I GKP+
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 176
Query: 303 RALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMADMHPLGNSSWPA 354
+ + L+ ++P K + P P+ + + Y GG F G +
Sbjct: 177 ECIKIILDLIFESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDR 236
Query: 355 RNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
+ G P P Y D R G PPG+ G
Sbjct: 237 MPPNRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 271
Score = 99 (39.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 27 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 84
Query: 175 IIIYSSPTKIAKTQNK 190
+ I + I + K
Sbjct: 85 LSISADTETIGEILKK 100
Score = 98 (39.6 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 404
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 405 QDQIQNAQYLLQN 417
Score = 91 (37.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L GG+IG G +K LRE TQ I + + P S +RV++I P ++
Sbjct: 117 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVV 176
Query: 186 K 186
+
Sbjct: 177 E 177
Score = 67 (28.6 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 374 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 425
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 103 (41.3 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 339 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLEG 393
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 394 SEDRIITITGTQDQIQNAQYLLQNSVKQ 421
Score = 102 (41.0 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 40/158 (25%), Positives = 64/158 (40%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLL+ ++ G ++G +G I+ LR T I++ C +TD +V I GKP+
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 176
Query: 303 RALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMADMHPLGNSSWPA 354
+ + L+ ++P K + P P+ + + Y GG F G +
Sbjct: 177 ECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDR 236
Query: 355 RNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
+ G P P Y D R G PPG+ G
Sbjct: 237 MPPNRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 271
Score = 99 (39.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 27 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 84
Query: 175 IIIYSSPTKIAKTQNK 190
+ I + I + K
Sbjct: 85 LSISADTETIGEILKK 100
Score = 98 (39.6 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 404
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 405 QDQIQNAQYLLQN 417
Score = 91 (37.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L GG+IG G +K LRE TQ I + + P S +RV++I P ++
Sbjct: 117 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVV 176
Query: 186 K 186
+
Sbjct: 177 E 177
Score = 67 (28.6 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 374 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 425
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 110 (43.8 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
++SREQ G+SQP D R+L P++ +G +IGK G +K+L ++TQ+K+ +
Sbjct: 147 HASREQGSSPGGSSQPKQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKE 206
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ I I+++P
Sbjct: 207 NAGAAEKPITIHATP 221
Score = 97 (39.2 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 41/151 (27%), Positives = 70/151 (46%)
Query: 419 NVKQLQQETGASIHVEDAP-TDSDER-VIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
++KQL + GASI + A D+ ER VI E + + + I L+ +N + E
Sbjct: 422 HIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGR-IFGKLKEENFFNP-KE 479
Query: 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
+ + + VPS G ++G+GG +NE++ T A++ V + Q P + E IV I
Sbjct: 480 EVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVP----RDQTPDE-NEEVIVKI 534
Query: 537 RGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
G H ++ + Q +K Q +
Sbjct: 535 IG---HFFASQTAQRKIREIVQQVKQQEQKH 562
Score = 96 (38.9 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
L +P VG ++GK+G I++L GA+I++ PA+ P A T+ MV I+G P +
Sbjct: 405 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEG--PDA--TERMVIITGPPEAQFK 460
Query: 304 A 304
A
Sbjct: 461 A 461
Score = 92 (37.4 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 21/89 (23%), Positives = 39/89 (43%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N++VG L+GK G ++++ +TG I + P L N +
Sbjct: 239 ADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLT--IYNPER 296
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ + G A E+ L + D
Sbjct: 297 TITVKGSTEACSNAEVEIMKKLREAYEND 325
Score = 82 (33.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 35/139 (25%), Positives = 62/139 (44%)
Query: 183 KIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA 242
KIA + D A E P A A ++ ++ EE+ F + E + A
Sbjct: 435 KIAPAEGPD---ATERMVIITGPPEAQFKAQGRIFGKLKEENFF------NPKEEVKLEA 485
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGK---PN 299
+ VP+ G ++GK G + L++ T A + ++P D+ P N + +V+I G
Sbjct: 486 HIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVKIIGHFFASQ 542
Query: 300 VAKRALYEVSTLLHQNPRK 318
A+R + E+ + Q +K
Sbjct: 543 TAQRKIREIVQQVKQQEQK 561
Score = 69 (29.3 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
L +P+ VG I+G+ G I ++ R A I++ A P ++E +V I G E
Sbjct: 405 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAE------GPDATERMVIITGPPEAQ 458
Query: 544 ISAHG 548
A G
Sbjct: 459 FKAQG 463
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 150 (57.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 54/185 (29%), Positives = 88/185 (47%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD----- 319
+R TGA ++V D LP +T+ + I+G P + ++ ++ ++P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY 178
Query: 320 KP-PSSFP------QAYGGQNFHSPPAP-MADMHPLG--NSSWPAR--NSSLHGMPST-P 366
+P PSS P QAY Q ++ P P + +H L S +P N+ G+ S+ P
Sbjct: 179 RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSP 238
Query: 367 WMGGY 371
+ GY
Sbjct: 239 EVKGY 243
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 102 (41.0 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I++ A+ P +TD V
Sbjct: 248 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI--AN---PVEGSTDRQVT 302
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 303 ITGSAASISLAQYLINVRL 321
Score = 95 (38.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 253 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 305
Query: 539 SS 540
S+
Sbjct: 306 SA 307
Score = 93 (37.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 122 (48.0 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 112 SNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE 171
+N S E+ + P D V+R++ P K+G +IG+ G+ +K + EET+A+I V D +
Sbjct: 59 TNDSAEERWPG-WPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTP 117
Query: 172 ERVIII 177
+R+++I
Sbjct: 118 DRIVLI 123
Score = 108 (43.1 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 189 NKDDDSAAETKKESMEPHCA-AQDALLKVHDRIIEEDLFGGMASDDD----NENSTITA- 242
N D + KE E + + A DA+L+V R+ G+ +DD N S ++
Sbjct: 115 NTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRV------SGLPDNDDDDVQNAGSVFSSV 168
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLLV + L+GK+G +I+ + +GA++R+L + P A + +V + G+
Sbjct: 169 RLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKIL 228
Query: 303 RAL 305
+AL
Sbjct: 229 KAL 231
Score = 64 (27.6 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
Identities = 22/92 (23%), Positives = 42/92 (45%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
++ + +P S I+G G I +RRR+ A I + + PHP + V+I+G+
Sbjct: 341 VSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIK------ESPHP--DQITVEIKGT 392
Query: 540 SEHLISAHGTYQSFMTSGQSMKVQPSSYQNIN 571
+ + +A Q F+ + + Y I+
Sbjct: 393 TSQVQTAEQLIQEFIINHKEPVSVSGGYARID 424
Score = 42 (19.8 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 33/145 (22%), Positives = 57/145 (39%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
++ + +P + ++G G I +R +GA I + + P T E+ + +
Sbjct: 341 VSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKES---PHPDQITVEIKGTTSQVQ 397
Query: 300 VAKRALYEVSTLLHQNPRK-----DKPPSSFPQAYGGQ-NFHSPPAPMADMHPLGNSSWP 353
A++ + E + H+ P + S + AY Q + P P M P
Sbjct: 398 TAEQLIQEF-IINHKEPVSVSGGYARIDSGYVPAYPPQLSNRQEPLPSTYMGTEPVQYRP 456
Query: 354 ARNSSLHGMPST--PWMGG--YGDQ 374
S L G PST P + G YG +
Sbjct: 457 TAYSQLGG-PSTYTPTLTGQTYGSE 480
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 5/19 (26%), Positives = 15/19 (78%)
Query: 419 NVKQLQQETGASIHVEDAP 437
N+ +++ +GA+I ++++P
Sbjct: 362 NIAYIRRRSGATITIKESP 380
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 144 (55.7 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 66/286 (23%), Positives = 115/286 (40%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
E S I ++L NN++G ++GK G+ I+R+ +T I V + + + N + ++ +
Sbjct: 176 ECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDIN--SFNLERIITVK 233
Query: 296 GKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGN-----S 350
G RA ++ST L Q+ D + PQ+ H PMA M GN +
Sbjct: 234 GLIENMSRAENQISTKLRQSYENDLQAMA-PQSLMFPGLH----PMAMMSTPGNGMVFNT 288
Query: 351 SWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAXXXX 410
S P + M TP P+ + + P +G + I
Sbjct: 289 SMPFPSCQSFAMSKTPASVVPPVFPNDLQETTYLYIPNNAVGAIIGTRGSHIRSIMRFSN 348
Query: 411 XXXXXXXFNV-KQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQN 469
+ K L Q+T + + P EG W + + + +
Sbjct: 349 ASLKIAPLDADKPLDQQTERKVTIVGTP-------------EGQWKAQYMIFEKMREEGF 395
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
++ +T LLV SS+VG I+G+GG + E++R T + I++
Sbjct: 396 MCG--TDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKL 439
Score = 109 (43.4 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 27/107 (25%), Positives = 52/107 (48%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV--ADTIPGSEERVIIIY 178
G + AD RIL S +G +IG+ G+ ++++ ++++A++ V + + GS E+ I IY
Sbjct: 86 GPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENV-GSLEKSITIY 144
Query: 179 SSPTKIAKTQNKD----DDSAAETKKESMEPHCAAQDALLKVHDRII 221
+P + A T K + P C+ + H+ +I
Sbjct: 145 GNPENCTNACKRILEVMQQEAISTNKGELSPECSEICLKILAHNNLI 191
Score = 102 (41.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 60/225 (26%), Positives = 94/225 (41%)
Query: 169 GSEERVIIIYSSPT-KIAKTQ-NKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLF 226
GS R I+ +S+ + KIA +K D E K + A + +++ EE
Sbjct: 337 GSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQYMIFEKMREE--- 393
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL-PPCA 285
G M DD +T LLV ++ VG ++GK G ++ L+ TG+ I+ LP L PP
Sbjct: 394 GFMCGTDDVR---LTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIK-LPEHALAPPSG 449
Query: 286 MNTDEMVQISGKPNVAKRALYEV-STLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADM 344
+ + V I G + A + + +L NP PP + Q + +A
Sbjct: 450 GDEETPVHIIGLFYSVQSAQRRIRAMMLSTNP----PPITKKQKAAKEQLQQQQQSLAGA 505
Query: 345 HPLGNSSW-PARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPP 388
G+ P S +P P + QP + S S +S PP
Sbjct: 506 ASSGSQQQQPQSPSQQQALP--PQLH---HQP--VSSASSSSTPP 543
Score = 88 (36.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + IG +IGK+GN +K + ++T KITV+ D + ER+I + +++
Sbjct: 183 KILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGLIENMSRA 242
Query: 188 QNK 190
+N+
Sbjct: 243 ENQ 245
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 146 (56.5 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 79/347 (22%), Positives = 131/347 (37%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 165 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 222
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDK-PPSSFPQAYGGQNFHSPPAPMADMHPLGN 349
+ + G A E+ L + D + G N + + G
Sbjct: 223 TITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSA-----LGIFSTGL 277
Query: 350 SSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSC-PPGQMGEVSAEFS------MKI 402
S P P+ P+ P SG +S PP Q G S + +
Sbjct: 278 SVLPPPAGPRGAPPAPPY------HPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNL 331
Query: 403 LCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQT 460
++KQL + GASI + A P S+ VI E + + +
Sbjct: 332 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR- 390
Query: 461 IDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARV 520
I L+ +N + E+ + + VPSS G ++G+GG +NE++ T A++ V
Sbjct: 391 IFGKLKEENFFNP-KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP---- 445
Query: 521 KLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
+ Q P + E IV I G H ++ + Q +K Q Y
Sbjct: 446 RDQTPDE-NEEVIVRIIG---HFFASQTAQRKIREIVQQVKQQEQKY 488
Score = 103 (41.3 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G+SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 73 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 132
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 133 NSGAAEKPVTIHATP 147
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 146 (56.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 79/347 (22%), Positives = 131/347 (37%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 187 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 244
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDK-PPSSFPQAYGGQNFHSPPAPMADMHPLGN 349
+ + G A E+ L + D + G N + + G
Sbjct: 245 TITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSA-----LGIFSTGL 299
Query: 350 SSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSC-PPGQMGEVSAEFS------MKI 402
S P P+ P+ P SG +S PP Q G S + +
Sbjct: 300 SVLPPPAGPRGAPPAPPY------HPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNL 353
Query: 403 LCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQT 460
++KQL + GASI + A P S+ VI E + + +
Sbjct: 354 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR- 412
Query: 461 IDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARV 520
I L+ +N + E+ + + VPSS G ++G+GG +NE++ T A++ V
Sbjct: 413 IFGKLKEENFFNP-KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP---- 467
Query: 521 KLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
+ Q P + E IV I G H ++ + Q +K Q Y
Sbjct: 468 RDQTPDE-NEEVIVRIIG---HFFASQTAQRKIREIVQQVKQQEQKY 510
Score = 103 (41.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G+SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 95 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 154
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 155 NSGAAEKPVTIHATP 169
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 146 (56.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 79/347 (22%), Positives = 131/347 (37%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 191 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 248
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDK-PPSSFPQAYGGQNFHSPPAPMADMHPLGN 349
+ + G A E+ L + D + G N + + G
Sbjct: 249 TITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSA-----LGIFSTGL 303
Query: 350 SSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSC-PPGQMGEVSAEFS------MKI 402
S P P+ P+ P SG +S PP Q G S + +
Sbjct: 304 SVLPPPAGPRGAPPAPPY------HPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNL 357
Query: 403 LCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQT 460
++KQL + GASI + A P S+ VI E + + +
Sbjct: 358 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR- 416
Query: 461 IDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARV 520
I L+ +N + E+ + + VPSS G ++G+GG +NE++ T A++ V
Sbjct: 417 IFGKLKEENFFNP-KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP---- 471
Query: 521 KLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
+ Q P + E IV I G H ++ + Q +K Q Y
Sbjct: 472 RDQTPDE-NEEVIVRIIG---HFFASQTAQRKIREIVQQVKQQEQKY 514
Score = 103 (41.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G+SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 99 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 158
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 159 NSGAAEKPVTIHATP 173
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 146 (56.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 79/347 (22%), Positives = 131/347 (37%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 198 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 255
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDK-PPSSFPQAYGGQNFHSPPAPMADMHPLGN 349
+ + G A E+ L + D + G N + + G
Sbjct: 256 TITVKGTVEACANAEVEIMKKLREAFENDMLAVNQQANLIPGLNLSA-----LGIFSTGL 310
Query: 350 SSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSC-PPGQMGEVSAEFS------MKI 402
S P P+ P+ P SG +S PP Q G S + +
Sbjct: 311 SVLPPPAGPRGAPPAPPY------HPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNL 364
Query: 403 LCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQT 460
++KQL + GASI + A P S+ VI E + + +
Sbjct: 365 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR- 423
Query: 461 IDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARV 520
I L+ +N + E+ + + VPSS G ++G+GG +NE++ T A++ V
Sbjct: 424 IFGKLKEENFFNP-KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP---- 478
Query: 521 KLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
+ Q P + E IV I G H ++ + Q +K Q Y
Sbjct: 479 RDQTPDE-NEEVIVRIIG---HFFASQTAQRKIREIVQQVKQQEQKY 521
Score = 103 (41.3 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G+SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 106 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 165
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 166 NSGAAEKPVTIHATP 180
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 146 (56.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 79/347 (22%), Positives = 131/347 (37%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 266 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 323
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDK-PPSSFPQAYGGQNFHSPPAPMADMHPLGN 349
+ + G A E+ L + D + G N + + G
Sbjct: 324 TITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSA-----LGIFSTGL 378
Query: 350 SSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSC-PPGQMGEVSAEFS------MKI 402
S P P+ P+ P SG +S PP Q G S + +
Sbjct: 379 SVLPPPAGPRGAPPAPPY------HPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNL 432
Query: 403 LCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQT 460
++KQL + GASI + A P S+ VI E + + +
Sbjct: 433 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR- 491
Query: 461 IDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARV 520
I L+ +N + E+ + + VPSS G ++G+GG +NE++ T A++ V
Sbjct: 492 IFGKLKEENFFNP-KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP---- 546
Query: 521 KLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
+ Q P + E IV I G H ++ + Q +K Q Y
Sbjct: 547 RDQTPDE-NEEVIVRIIG---HFFASQTAQRKIREIVQQVKQQEQKY 589
Score = 103 (41.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G+SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 174 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 233
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 234 NSGAAEKPVTIHATP 248
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 45/177 (25%), Positives = 77/177 (43%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ET KIT++ D + ER I + + A
Sbjct: 199 KILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANA 258
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVP 247
+ + + +E+ E A + + FG I L +P
Sbjct: 259 EIE----IMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPFPHHHSYPEQEIV-NLFIP 313
Query: 248 NNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRA 304
VG ++GK+G I++L GA+I++ PA+ P + + MV I+G P +A
Sbjct: 314 TQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFKA 366
Score = 108 (43.1 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 42/151 (27%), Positives = 70/151 (46%)
Query: 419 NVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
++KQL + GASI + A P S+ VI E + + + I L+ +N + E
Sbjct: 327 HIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR-IFGKLKEENFFNP-KE 384
Query: 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
+ + + VPSS G ++G+GG +NE++ T A++ V + Q P + E IV I
Sbjct: 385 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP----RDQTPDE-NEEVIVRI 439
Query: 537 RGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
G H ++ + Q +K Q Y
Sbjct: 440 IG---HFFASQTAQRKIREIVQQVKQQEQKY 467
Score = 103 (41.3 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G+SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 95 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 154
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 155 NSGAAEKPVTIHATP 169
Score = 88 (36.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/111 (22%), Positives = 56/111 (50%)
Query: 225 LFGGMASDD---DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281
+FG + ++ E + A + VP++ G ++GK G + L++ T A + ++P D+
Sbjct: 370 IFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQT 428
Query: 282 PPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQ 332
P N + +V+I G ++ A ++ ++ Q ++++ +PQ Q
Sbjct: 429 PD--ENEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQ---KYPQGVASQ 474
Score = 78 (32.5 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 187 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 244
Query: 291 MVQISGKPNVAKRALYEVSTLLHQ 314
+ + G A E+ L +
Sbjct: 245 TITVKGTVEACANAEIEIMKKLRE 268
Score = 67 (28.6 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
L +P+ VG I+G+ G I ++ R A I++ A P SE +V I G E
Sbjct: 310 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAE------GPDVSERMVIITGPPEAQ 363
Query: 544 ISAHG 548
A G
Sbjct: 364 FKAQG 368
Score = 65 (27.9 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
R+LVP VG ++GK G I+ + +T + + +
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 150
Score = 45 (20.9 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 393 EVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHV---EDAPTDSDERVI 445
+++ E +KIL N+K+++ ETG I + +D + ER I
Sbjct: 191 KLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTI 246
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 105 (42.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 343 GGRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLEG 397
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 398 SEDRIITITGTQDQIQNAQYLLQNSVKQ 425
Score = 99 (39.9 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 474 FSEKG--TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSE 531
+S+ G ITT++ +P G I+G+GG I ++R + GA +K+ +P GS +
Sbjct: 348 YSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSED 400
Query: 532 CIVDIRGSSEHLISAHGTYQS 552
I+ I G+ + + +A Q+
Sbjct: 401 RIITITGTQDQIQNAQYLLQN 421
Score = 95 (38.5 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 44/172 (25%), Positives = 72/172 (41%)
Query: 211 DALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETG 270
+ LLK+ + E + G +D D E RLL+ ++ G ++G +G I+ LR T
Sbjct: 100 EILLKIIPTLEEYQHYSG--TDFDCE-----LRLLIHQSLAGGIIGVKGAKIKELRENTQ 152
Query: 271 ANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK--P--PSSFP 326
I++ C +TD +V + GKP + + L+ + P K + P P+ +
Sbjct: 153 TTIKLFQEC----CPHSTDRVVLVGGKPERVVECIKVILELIAEAPIKGRAQPYDPNFYD 208
Query: 327 QAYGGQNFHSPPAPMADMHPLGNSSWPARN-SSLHGMPSTPWMGGYGDQPSR 377
+ Y F + P+G +P R MP P G PSR
Sbjct: 209 ETYDYGGF-TMMYEERGRRPMGG--FPMRGRGGFDRMP--PGRGSRSVPPSR 255
Score = 93 (37.8 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + R+L S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 31 EQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 88
Query: 175 III 177
+ +
Sbjct: 89 LSV 91
Score = 90 (36.7 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L GG+IG G +K LRE TQ I + + P S +RV+++ P ++
Sbjct: 121 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLVGGKPERVV 180
Query: 186 K 186
+
Sbjct: 181 E 181
Score = 41 (19.5 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 19/84 (22%), Positives = 31/84 (36%)
Query: 310 TLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMG 369
T++++ R +P FP G PP + P + + P P G
Sbjct: 217 TMMYEE-RGRRPMGGFPMRGRGGFDRMPPGRGSRSVPPSRRDYDDMSPRRGPPPPPPGRG 275
Query: 370 GYGDQPSRMGSGSINSCPPGQMGE 393
G G SR + + PP + G+
Sbjct: 276 GRGG--SRARNLPLPPPPPPRGGD 297
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 111 (44.1 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 91 KKRPNNQFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIV 150
++ P+ Q + + G ++G+ S + S +P D R+L P++ +G +IGK G +
Sbjct: 161 QQNPSPQLRGRRGPG-QRGS-SRQASPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATI 218
Query: 151 KSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
+++ ++TQ+KI V G+ E+ I I S+P
Sbjct: 219 RNITKQTQSKIDVHRKENTGAAEKSITILSTP 250
Score = 95 (38.5 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 38/149 (25%), Positives = 65/149 (43%)
Query: 372 GDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASI 431
G P G S + PP E S ++ + A ++KQL + GASI
Sbjct: 381 GMPPPTSGPPSTLT-PPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASI 439
Query: 432 HVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE--F---SEKGTITTRLLV 486
+ AP ++ + +R G P +Q A ++ K E F E+ + + V
Sbjct: 440 KI--APAEAPDAKVRMVIITG--PPEAQ-FKAQGRIYGKIKEENFVSPKEEVKLEAHIRV 494
Query: 487 PSSKVGCILGQGGHVINEMRRRTQADIRV 515
PS G ++G+GG +NE++ + A++ V
Sbjct: 495 PSFAAGRVIGKGGKTVNELQSLSSAEVVV 523
Score = 93 (37.8 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
E + A + VP+ G ++GK G + L+S + A + V+P D+ P N +V+I+
Sbjct: 484 EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEV-VVPRDQTPD--ENDQVVVKIT 540
Query: 296 GK---PNVAKRALYEVSTLLHQNPRKDKPPSSFPQA 328
G VA+R + E+ T + Q+ ++ S PQ+
Sbjct: 541 GHFYACQVAQRKIQEILTQVKQHQQQKALQSGPPQS 576
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
++ T T L +P VG ++GK+G I++L GA+I++ PA+ P + MV I+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA-PDAKVR---MVIIT 457
Query: 296 GKPNVAKRA 304
G P +A
Sbjct: 458 GPPEAQFKA 466
Score = 85 (35.0 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I ++L NN VG L+GK G ++++ +T I + P L N + + + G
Sbjct: 277 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT--LYNPERTITVKGSVE 334
Query: 300 VAKRALYEVSTLLHQNPRKD 319
+A E+ + ++ D
Sbjct: 335 TCAKAEEEIMKKIRESYEND 354
Score = 77 (32.2 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 473 EFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSEC 532
+F + T T L +P+ VG I+G+ G I ++ R A I++ A P +
Sbjct: 399 QFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA------PDAKVR 452
Query: 533 IVDIRGSSEHLISAHG 548
+V I G E A G
Sbjct: 453 MVIITGPPEAQFKAQG 468
Score = 73 (30.8 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 20/84 (23%), Positives = 35/84 (41%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLLVP VG ++GK G I+ + +T + I V + ++ + I P
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAA----EKSITILSTPEGTS 254
Query: 303 RALYEVSTLLHQNPRKDKPPSSFP 326
A + ++H+ + K P
Sbjct: 255 AACKSILEIMHKEAQDIKFTEEIP 278
Score = 72 (30.4 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ + + ER I + S AK
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGSVETCAKA 339
Query: 188 QNK 190
+ +
Sbjct: 340 EEE 342
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 120 (47.3 bits), Expect = 0.00073, P = 0.00073
Identities = 38/129 (29%), Positives = 63/129 (48%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGT 479
V + ++E+GA I++ D ER++ S G N A + K EF++ G
Sbjct: 46 VNRFREESGAKINISDG--SCPERIVTVS---GTTNA---IFSAFTLITKKFEEFNDVGK 97
Query: 480 -----ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
I RL+VP+S+ G ++G+ G I E+R+ T I+V + P S+E V
Sbjct: 98 VGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEML------PNSTERAV 151
Query: 535 DIRGSSEHL 543
+ GS+E +
Sbjct: 152 TLSGSAEQI 160
Score = 115 (45.5 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 44/162 (27%), Positives = 76/162 (46%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I RL+VP + G L+GK G I+ +R TG +I+V ++ LP +T+ V +SG
Sbjct: 103 IPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVA-SEMLPN---STERAVTLSGSAE 158
Query: 300 VAKRALYEVSTLLHQNPRKDK--PPSSFPQAYGGQNFHSPPAPMADMHPL---GNSSWPA 354
+ +Y++ ++ ++P + P PQ G P +A+ GN + P
Sbjct: 159 QITQCIYQICLVMLESPPRGATIPYRPKPQVTG-------PVILANGQAFTIQGNYAVPT 211
Query: 355 RNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSA 396
+ + + + S +G G P+ +G IN GE+SA
Sbjct: 212 QEVAKNPLASLAALGLAGMNPA--STGGIN-----HTGELSA 246
Score = 107 (42.7 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG + ++ + T+T RL++ VG ++GK+G+++ R R E+GA I + +D P
Sbjct: 11 GGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCP--- 65
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLL 312
+ +V +SG N A++ TL+
Sbjct: 66 --ERIVTVSGTTN----AIFSAFTLI 85
Score = 106 (42.4 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA 164
++ N S+S+ S + P+ T+ R++ +++G +IGK G IV REE+ AKI ++
Sbjct: 1 MEDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINIS 60
Query: 165 DTIPGS-EERVIIIYSSPTKI 184
D GS ER++ + + I
Sbjct: 61 D---GSCPERIVTVSGTTNAI 78
Score = 105 (42.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
+ V N+++GC++GK G I +R +GA IR+ + NTD + ISG P+
Sbjct: 290 MTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEERE--GGNTDRTITISGNPDSVAL 347
Query: 304 ALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMA 342
A Y L++ + K + QA QN + AP A
Sbjct: 348 AQY----LINMSVELQKA-NLLEQAQSQQNGGAAAAPGA 381
Score = 69 (29.3 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 21/87 (24%), Positives = 44/87 (50%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
+ V + +GCI+G+GG I E+R+ + A IR+ ++ G+++ + I G+ + +
Sbjct: 290 MTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNC----EEREGGNTDRTITISGNPDSV 345
Query: 544 -ISAHGTYQSFMTSGQSMKVQPSSYQN 569
++ + S ++ Q S QN
Sbjct: 346 ALAQYLINMSVELQKANLLEQAQSQQN 372
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 109 (43.4 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 27/92 (29%), Positives = 51/92 (55%)
Query: 91 KKRPNNQFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIV 150
++ P+ Q + + G ++G+ S S +P D R+L P++ +G +IGK G +
Sbjct: 161 QQNPSQQPRGRRGFG-QRGS-SRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATI 218
Query: 151 KSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
+++ ++TQ+KI V G+ E+ I I S+P
Sbjct: 219 RNITKQTQSKIDVHRKENAGAAEKSITILSTP 250
Score = 97 (39.2 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 38/149 (25%), Positives = 65/149 (43%)
Query: 372 GDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASI 431
G P G S + PP E S ++ + A ++KQL + GASI
Sbjct: 381 GMPPPTSGPPSAMT-PPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASI 439
Query: 432 HVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE--F---SEKGTITTRLLV 486
+ AP ++ + +R G P +Q A ++ K E F E+ + + V
Sbjct: 440 KI--APAEAPDAKVRMVIITG--PPEAQ-FKAQGRIYGKIKEENFVSPKEEVKLEAHIRV 494
Query: 487 PSSKVGCILGQGGHVINEMRRRTQADIRV 515
PS G ++G+GG +NE++ + A++ V
Sbjct: 495 PSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 92 (37.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
++ T T L +P VG ++GK+G I++L GA+I++ PA+ P + MV I+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA-PDAKVR---MVIIT 457
Query: 296 GKPNVAKRA 304
G P +A
Sbjct: 458 GPPEAQFKA 466
Score = 90 (36.7 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
E + A + VP+ G ++GK G + L++ + A + V+P D+ P N +V+I+
Sbjct: 484 EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKIT 540
Query: 296 GK---PNVAKRALYEVSTLLHQNPRKDKPPSSFPQA 328
G VA+R + E+ T + Q+ ++ S PQ+
Sbjct: 541 GHFYACQVAQRKIQEILTQVKQHQQQKALQSGPPQS 576
Score = 85 (35.0 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I ++L NN VG L+GK G ++++ +T I + P L N + + + G
Sbjct: 277 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT--LYNPERTITVKGNVE 334
Query: 300 VAKRALYEVSTLLHQNPRKD 319
+A E+ + ++ D
Sbjct: 335 TCAKAEEEIMKKIRESYEND 354
Score = 82 (33.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 120 FGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADT-IPGSEERVIIIY 178
F S+ +TV+ + P+ +G +IGK G +K L A I +A P ++ R++II
Sbjct: 400 FEQSE-TETVH-LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIIT 457
Query: 179 SSPTKIAKTQNK 190
P K Q +
Sbjct: 458 GPPEAQFKAQGR 469
Score = 77 (32.2 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 473 EFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSEC 532
+F + T T L +P+ VG I+G+ G I ++ R A I++ A P +
Sbjct: 399 QFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA------PDAKVR 452
Query: 533 IVDIRGSSEHLISAHG 548
+V I G E A G
Sbjct: 453 MVIITGPPEAQFKAQG 468
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/100 (23%), Positives = 40/100 (40%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
G S + + RLLVP VG ++GK G I+ + +T + I V + A
Sbjct: 183 GSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AG 238
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFP 326
++ + I P A + ++H+ + K P
Sbjct: 239 AAEKSITILSTPEGTSAACKSILEIMHKEAQDIKFTEEIP 278
Score = 69 (29.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ + + ER I + + AK
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKA 339
Query: 188 QNK 190
+ +
Sbjct: 340 EEE 342
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 144 (55.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 49/166 (29%), Positives = 78/166 (46%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD----- 319
+R TGA ++V D LP +T+ + I+G P + ++ ++ ++P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY 178
Query: 320 KP-PSSFPQAY-GGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP 363
+P PSS P + GGQ+ +S + A P S N L G P
Sbjct: 179 RPKPSSSPVIFAGGQDRYSTGSDSASF-PHTTPSM-CLNPDLEGPP 222
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 109 (43.4 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 210 QDALLKVHDRIIEEDLF----G--GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQ 263
Q L K+H +++ F G G ++ D T + L +PN+++GC++G++G I
Sbjct: 236 QPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKIN 295
Query: 264 RLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
+R +GA I++ A+ P +TD V I+G A Y ++ L
Sbjct: 296 EIRQMSGAQIKI--AN---PVEGSTDRQVTITGSAASISLAQYLINVRL 339
Score = 95 (38.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 271 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 323
Query: 539 SS 540
S+
Sbjct: 324 SA 325
Score = 93 (37.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 103 (41.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 351 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLEG 405
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 406 SEDRIITITGTQDQIQNAQYLLQNSVKQ 433
Score = 98 (39.6 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 416
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 417 QDQIQNAQYLLQN 429
Score = 97 (39.2 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 30 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 87
Query: 175 IIIYSSPTKIAKTQNK 190
+ I + I + K
Sbjct: 88 LSISADIETIGEILKK 103
Score = 92 (37.4 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 38/158 (24%), Positives = 62/158 (39%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLL+ ++ G ++G +G I++ T I++ C +TD +V I GKP+
Sbjct: 124 RLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 179
Query: 303 RALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMADMHPLGNSSWPA 354
+ + L+ ++P K + P P+ + + Y GG F G +
Sbjct: 180 ECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDR 239
Query: 355 RNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G P P Y D R G PPG+ G
Sbjct: 240 MPPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 274
Score = 73 (30.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L GG+IG G +K TQ I + + P S +RV++I P ++
Sbjct: 120 DCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECCPHSTDRVVLIGGKPDRVV 179
Query: 186 K 186
+
Sbjct: 180 E 180
Score = 67 (28.6 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 386 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 437
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 144 (55.7 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 49/166 (29%), Positives = 78/166 (46%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD----- 319
+R TGA ++V D LP +T+ + I+G P + ++ ++ ++P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY 178
Query: 320 KP-PSSFPQAY-GGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP 363
+P PSS P + GGQ+ +S + A P S N L G P
Sbjct: 179 RPKPSSSPVIFAGGQDRYSTGSDSASF-PHTTPSM-CLNPDLEGPP 222
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 102 (41.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I++ A+ P +TD V
Sbjct: 279 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI--AN---PVEGSTDRQVT 333
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 334 ITGSAASISLAQYLINVRL 352
Score = 95 (38.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 284 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 336
Query: 539 SS 540
S+
Sbjct: 337 SA 338
Score = 93 (37.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 166 (63.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 66/256 (25%), Positives = 112/256 (43%)
Query: 211 DALLKVHDRI---IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
DA+ K I EED+ M++ +T RL+VP + G L+GK G I+ +R
Sbjct: 66 DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP- 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 126 STGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 181
Query: 322 PSSFP------QAYGGQNFHSPPAP--MADMHPLGNSSWPAR--NSSLHGMPSTPW-MGG 370
P+S P QAY Q ++ P P + +H L P + P +
Sbjct: 182 PASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHS 241
Query: 371 YGDQPSRMGSGS-INSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGA 429
+ + MG S +++ PP E++ + I C + +++Q +GA
Sbjct: 242 SEEAQNLMGQSSGLDASPPASTHELTIPNDL-IGCIIGRQGT-------KINEIRQMSGA 293
Query: 430 SIHVEDAPTDSDERVI 445
I + +A S ER I
Sbjct: 294 QIKIANATEGSSERQI 309
Score = 125 (49.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 98 FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREET 157
FK ++ K +S S S+P T+ R++ P+ + G +IGK G+ +K +RE T
Sbjct: 69 FKAFAMIAYKFEEDITNSMSNSTATSKPPVTL-RLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 158 QAKITVA-DTIPGSEERVIIIYSSPTKI 184
A++ VA D +P S ER + I +P I
Sbjct: 128 GAQVQVAGDMLPNSTERAVTISGTPDAI 155
Score = 114 (45.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 40/162 (24%), Positives = 69/162 (42%)
Query: 462 DAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVK 521
D + N T+ + K +T RL+VP+S+ G ++G+GG I E+R T A ++V G
Sbjct: 82 DITNSMSNSTA--TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG---- 135
Query: 522 LQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS----GQSMKVQPSSYQNINPXXXXX 577
D P S+E V I G+ + +I M G ++ +P P
Sbjct: 136 --DMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST--PVIFAG 191
Query: 578 XXXXXXXXXYQNMNTQQ-SPYHRVNAQQSPYQNINPQQSSYP 618
Y + Q + H++ QQ+P+ + ++P
Sbjct: 192 GQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFP 233
Score = 94 (38.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ +GCI+G+ G INE+R+ + GA++K+ + GSSE + I G+
Sbjct: 263 THELTIPNDLIGCIIGRQGTKINEIRQMS-------GAQIKIANATEGSSERQITITGTP 315
Query: 541 EHLISAHGTYQSFMTS 556
++ A + +TS
Sbjct: 316 ANISLAQYLINARLTS 331
Score = 70 (29.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA---DRLPPCAMNTDEMVQ 293
N T+T RLL+ VG ++GK G + R ++GA I + +R+ TD + +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEGNCPERIVTITGPTDAIFK 70
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKPP 322
+A + +++ + + KPP
Sbjct: 71 AFAM--IAYKFEEDITNSMSNSTATSKPP 97
Score = 69 (29.3 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G + RE++ A+I +++ ER++ I + PT
Sbjct: 17 RLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEG--NCPERIVTI-TGPT 65
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 108 (43.1 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 114 SSREQSFGN---SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPG 169
SSR+ S G+ +P D R+L P++ +G +IGK G ++++ ++TQ+KI V G
Sbjct: 179 SSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAG 238
Query: 170 SEERVIIIYSSP 181
+ E+ I I S+P
Sbjct: 239 AAEKSITILSTP 250
Score = 97 (39.2 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 38/149 (25%), Positives = 65/149 (43%)
Query: 372 GDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASI 431
G P G S + PP E S ++ + A ++KQL + GASI
Sbjct: 381 GMPPPTSGPPSAMT-PPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASI 439
Query: 432 HVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE--F---SEKGTITTRLLV 486
+ AP ++ + +R G P +Q A ++ K E F E+ + + V
Sbjct: 440 KI--APAEAPDAKVRMVIITG--PPEAQ-FKAQGRIYGKIKEENFVSPKEEVKLEAHIRV 494
Query: 487 PSSKVGCILGQGGHVINEMRRRTQADIRV 515
PS G ++G+GG +NE++ + A++ V
Sbjct: 495 PSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 92 (37.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
++ T T L +P VG ++GK+G I++L GA+I++ PA+ P + MV I+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA-PDAKVR---MVIIT 457
Query: 296 GKPNVAKRA 304
G P +A
Sbjct: 458 GPPEAQFKA 466
Score = 90 (36.7 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
E + A + VP+ G ++GK G + L++ + A + V+P D+ P N +V+I+
Sbjct: 484 EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKIT 540
Query: 296 GK---PNVAKRALYEVSTLLHQNPRKDKPPSSFPQA 328
G VA+R + E+ T + Q+ ++ S PQ+
Sbjct: 541 GHFYACQVAQRKIQEILTQVKQHQQQKALQSGPPQS 576
Score = 85 (35.0 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I ++L NN VG L+GK G ++++ +T I + P L N + + + G
Sbjct: 277 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT--LYNPERTITVKGNVE 334
Query: 300 VAKRALYEVSTLLHQNPRKD 319
+A E+ + ++ D
Sbjct: 335 TCAKAEEEIMKKIRESYEND 354
Score = 82 (33.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 120 FGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADT-IPGSEERVIIIY 178
F S+ +TV+ + P+ +G +IGK G +K L A I +A P ++ R++II
Sbjct: 400 FEQSE-TETVH-LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIIT 457
Query: 179 SSPTKIAKTQNK 190
P K Q +
Sbjct: 458 GPPEAQFKAQGR 469
Score = 77 (32.2 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 473 EFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSEC 532
+F + T T L +P+ VG I+G+ G I ++ R A I++ A P +
Sbjct: 399 QFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA------PDAKVR 452
Query: 533 IVDIRGSSEHLISAHG 548
+V I G E A G
Sbjct: 453 MVIITGPPEAQFKAQG 468
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/100 (23%), Positives = 40/100 (40%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
G S + + RLLVP VG ++GK G I+ + +T + I V + A
Sbjct: 183 GSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AG 238
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFP 326
++ + I P A + ++H+ + K P
Sbjct: 239 AAEKSITILSTPEGTSAACKSILEIMHKEAQDIKFTEEIP 278
Score = 69 (29.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ + + ER I + + AK
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKA 339
Query: 188 QNK 190
+ +
Sbjct: 340 EEE 342
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 108 (43.1 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 114 SSREQSFGN---SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPG 169
SSR+ S G+ +P D R+L P++ +G +IGK G ++++ ++TQ+KI V G
Sbjct: 179 SSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAG 238
Query: 170 SEERVIIIYSSP 181
+ E+ I I S+P
Sbjct: 239 AAEKSITILSTP 250
Score = 97 (39.2 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 37/149 (24%), Positives = 65/149 (43%)
Query: 372 GDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASI 431
G P G S + P Q + S ++ + A ++KQL + GASI
Sbjct: 381 GMPPPTSGPPSAITPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASI 440
Query: 432 HVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE--F---SEKGTITTRLLV 486
+ AP ++ + +R G P +Q A ++ K E F E+ + + V
Sbjct: 441 KI--APAEAPDAKVRMVIITG--PPEAQ-FKAQGRIYGKIKEENFVSPKEEVKLEAHIRV 495
Query: 487 PSSKVGCILGQGGHVINEMRRRTQADIRV 515
PS G ++G+GG +NE++ + A++ V
Sbjct: 496 PSFAAGRVIGKGGKTVNELQNLSSAEVVV 524
Score = 94 (38.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
+ ++ T T L +P VG ++GK+G I++L GA+I++ PA+ P + MV
Sbjct: 401 EQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA-PDAKVR---MVI 456
Query: 294 ISGKPNVAKRA 304
I+G P +A
Sbjct: 457 ITGPPEAQFKA 467
Score = 85 (35.0 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I ++L NN VG L+GK G ++++ +T I + P L N + + + G
Sbjct: 277 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT--LYNPERTITVKGNVE 334
Query: 300 VAKRALYEVSTLLHQNPRKD 319
+A E+ + ++ D
Sbjct: 335 TCAKAEEEIMKKIRESYEND 354
Score = 84 (34.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
E + A + VP+ G ++GK G + L++ + A + V+P D+ P N +V+I+
Sbjct: 485 EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKIT 541
Query: 296 GK---PNVAKRALYEVSTLLHQNPRKDKPPSSFP 326
G VA+R + E+ T + Q+ ++ K S P
Sbjct: 542 GHFYACQVAQRKIQEILTQVKQH-QQQKALQSGP 574
Score = 84 (34.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 120 FGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADT-IPGSEERVIIIY 178
F +TV+ + P+ +G +IGK G +K L A I +A P ++ R++II
Sbjct: 400 FEQQSETETVH-LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIIT 458
Query: 179 SSPTKIAKTQNK 190
P K Q +
Sbjct: 459 GPPEAQFKAQGR 470
Score = 77 (32.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 23/100 (23%), Positives = 40/100 (40%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
G S + + RLLVP VG ++GK G I+ + +T + I V + A
Sbjct: 183 GSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AG 238
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFP 326
++ + I P A + ++H+ + K P
Sbjct: 239 AAEKSITILSTPEGTSAACKSILEIMHKEAQDIKFTEEIP 278
Score = 71 (30.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 473 EFSEKG-TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSE 531
+F ++ T T L +P+ VG I+G+ G I ++ R A I++ A P +
Sbjct: 399 QFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA------PDAKV 452
Query: 532 CIVDIRGSSEHLISAHG 548
+V I G E A G
Sbjct: 453 RMVIITGPPEAQFKAQG 469
Score = 69 (29.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ + + ER I + + AK
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKA 339
Query: 188 QNK 190
+ +
Sbjct: 340 EEE 342
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 45/177 (25%), Positives = 77/177 (43%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ET KIT++ D + ER I + + A
Sbjct: 278 KILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASA 337
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVP 247
+ + + +E+ E A + + FG I L +P
Sbjct: 338 EIE----IMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPFPHHHSYPEQEIV-NLFIP 392
Query: 248 NNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRA 304
VG ++GK+G I++L GA+I++ PA+ P + + MV I+G P +A
Sbjct: 393 TQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFKA 445
Score = 108 (43.1 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 42/151 (27%), Positives = 70/151 (46%)
Query: 419 NVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
++KQL + GASI + A P S+ VI E + + + I L+ +N + E
Sbjct: 406 HIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR-IFGKLKEENFFNP-KE 463
Query: 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
+ + + VPSS G ++G+GG +NE++ T A++ V + Q P + E IV I
Sbjct: 464 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP----RDQTPDE-NEEVIVRI 518
Query: 537 RGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
G H ++ + Q +K Q Y
Sbjct: 519 IG---HFFASQTAQRKIREIVQQVKQQEQKY 546
Score = 102 (41.0 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 174 HSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 233
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 234 NSGAAEKPVTIHATP 248
Score = 88 (36.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 25/111 (22%), Positives = 56/111 (50%)
Query: 225 LFGGMASDD---DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281
+FG + ++ E + A + VP++ G ++GK G + L++ T A + ++P D+
Sbjct: 449 IFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQT 507
Query: 282 PPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQ 332
P N + +V+I G ++ A ++ ++ Q ++++ +PQ Q
Sbjct: 508 PD--ENEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQ---KYPQGVASQ 553
Score = 77 (32.2 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 266 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 323
Query: 291 MVQISGKPNVAKRALYEVSTLLHQ 314
+ + G A E+ L +
Sbjct: 324 TITVKGTVEACASAEIEIMKKLRE 347
Score = 67 (28.6 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
L +P+ VG I+G+ G I ++ R A I++ A P SE +V I G E
Sbjct: 389 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAE------GPDVSERMVIITGPPEAQ 442
Query: 544 ISAHG 548
A G
Sbjct: 443 FKAQG 447
Score = 65 (27.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
R+LVP VG ++GK G I+ + +T + + +
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 229
Score = 45 (20.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 393 EVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHV---EDAPTDSDERVI 445
+++ E +KIL N+K+++ ETG I + +D + ER I
Sbjct: 270 KLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTI 325
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 139 (54.0 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 46/156 (29%), Positives = 75/156 (48%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD----- 319
+R TGA ++V D LP +T+ + I+G P + ++ ++ ++P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY 178
Query: 320 KP-PSSFP------QAYGGQNFHSPPAP-MADMHPL 347
+P PSS P QAY Q ++ P P + +H L
Sbjct: 179 RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQL 214
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 109 (43.4 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 210 QDALLKVHDRIIEEDLF----G--GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQ 263
Q L K+H +++ F G G ++ D T + L +PN+++GC++G++G I
Sbjct: 205 QPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKIN 264
Query: 264 RLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
+R +GA I++ A+ P +TD V I+G A Y ++ L
Sbjct: 265 EIRQMSGAQIKI--AN---PVEGSTDRQVTITGSAASISLAQYLINVRL 308
Score = 95 (38.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 240 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 292
Query: 539 SS 540
S+
Sbjct: 293 SA 294
Score = 93 (37.8 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 108 (43.1 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 42/151 (27%), Positives = 70/151 (46%)
Query: 419 NVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
++KQL + GASI + A P S+ VI E + + + I L+ +N + E
Sbjct: 449 HIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR-IFGKLKEENFFNP-KE 506
Query: 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
+ + + VPSS G ++G+GG +NE++ T A++ V + Q P + E IV I
Sbjct: 507 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP----RDQTPDE-NEEVIVRI 561
Query: 537 RGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
G H ++ + Q +K Q Y
Sbjct: 562 IG---HFFASQTAQRKIREIVQQVKQQEQKY 589
Score = 102 (41.0 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 174 HSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 233
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 234 NSGAAEKPVTIHATP 248
Score = 88 (36.0 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 25/111 (22%), Positives = 56/111 (50%)
Query: 225 LFGGMASDD---DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281
+FG + ++ E + A + VP++ G ++GK G + L++ T A + ++P D+
Sbjct: 492 IFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQT 550
Query: 282 PPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQ 332
P N + +V+I G ++ A ++ ++ Q ++++ +PQ Q
Sbjct: 551 PD--ENEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQ---KYPQGVASQ 596
Score = 87 (35.7 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
L +P VG ++GK+G I++L GA+I++ PA+ P + + MV I+G P +
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 487
Query: 304 A 304
A
Sbjct: 488 A 488
Score = 77 (32.2 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 266 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 323
Query: 291 MVQISGKPNVAKRALYEVSTLLHQ 314
+ + G A E+ L +
Sbjct: 324 TITVKGTVEACASAEIEIMKKLRE 347
Score = 67 (28.6 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
L +P+ VG I+G+ G I ++ R A I++ A P SE +V I G E
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAE------GPDVSERMVIITGPPEAQ 485
Query: 544 ISAHG 548
A G
Sbjct: 486 FKAQG 490
Score = 65 (27.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
R+LVP VG ++GK G I+ + +T + + +
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 229
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA 164
+IL + +G +IGK G +K + ET KIT++
Sbjct: 278 KILAHNGLVGRLIGKEGRNLKKIEHETGTKITIS 311
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 108 (43.1 bits), Expect = 7.8e-12, Sum P(3) = 7.8e-12
Identities = 42/151 (27%), Positives = 70/151 (46%)
Query: 419 NVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
++KQL + GASI + A P S+ VI E + + + I L+ +N + E
Sbjct: 455 HIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR-IFGKLKEENFFNP-KE 512
Query: 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
+ + + VPSS G ++G+GG +NE++ T A++ V + Q P + E IV I
Sbjct: 513 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP----RDQTPDE-NEEVIVRI 567
Query: 537 RGSSEHLISAHGTYQSFMTSGQSMKVQPSSY 567
G H ++ + Q +K Q Y
Sbjct: 568 IG---HFFASQTAQRKIREIVQQVKQQEQKY 595
Score = 102 (41.0 bits), Expect = 7.8e-12, Sum P(3) = 7.8e-12
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 113 NSSREQSF---GNSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADT 166
+SSREQ G SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 180 HSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 239
Query: 167 IPGSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 240 NSGAAEKPVTIHATP 254
Score = 88 (36.0 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 25/111 (22%), Positives = 56/111 (50%)
Query: 225 LFGGMASDD---DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281
+FG + ++ E + A + VP++ G ++GK G + L++ T A + ++P D+
Sbjct: 498 IFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQT 556
Query: 282 PPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQ 332
P N + +V+I G ++ A ++ ++ Q ++++ +PQ Q
Sbjct: 557 PD--ENEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQ---KYPQGVASQ 602
Score = 87 (35.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
L +P VG ++GK+G I++L GA+I++ PA+ P + + MV I+G P +
Sbjct: 438 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 493
Query: 304 A 304
A
Sbjct: 494 A 494
Score = 77 (32.2 bits), Expect = 7.8e-12, Sum P(3) = 7.8e-12
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ I ++L N +VG L+GK G ++++ ETG I + L N +
Sbjct: 272 ADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 329
Query: 291 MVQISGKPNVAKRALYEVSTLLHQ 314
+ + G A E+ L +
Sbjct: 330 TITVKGTVEACASAEIEIMKKLRE 353
Score = 67 (28.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
L +P+ VG I+G+ G I ++ R A I++ A P SE +V I G E
Sbjct: 438 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAE------GPDVSERMVIITGPPEAQ 491
Query: 544 ISAHG 548
A G
Sbjct: 492 FKAQG 496
Score = 65 (27.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
R+LVP VG ++GK G I+ + +T + + +
Sbjct: 203 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 235
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA 164
+IL + +G +IGK G +K + ET KIT++
Sbjct: 284 KILAHNGLVGRLIGKEGRNLKKIEHETGTKITIS 317
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 109 (43.4 bits), Expect = 9.4e-12, Sum P(3) = 9.4e-12
Identities = 46/169 (27%), Positives = 78/169 (46%)
Query: 375 PSRMGSGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVE 434
P +G+ S+ P G MG S + ++ + A ++KQL + GASI +
Sbjct: 387 PPALGN-SVPGPPYGPMG-ASEQETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKI- 443
Query: 435 DAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F--SEKGTITTRLLVPSS 489
AP ++ + +R G P +Q A ++ K E F E+ + T + V ++
Sbjct: 444 -APAEAPDSKMRMVIVTG--PPEAQ-FKAQGRIYGKLKEENFFGPKEEVKLETHIKVAAA 499
Query: 490 KVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
G ++G+GG +NE++ T A+ VV R + D H + IV I G
Sbjct: 500 AAGRVIGKGGKTVNELQNLTAAE--VVVPREQTPDEH---DQVIVKIIG 543
Score = 106 (42.4 bits), Expect = 9.4e-12, Sum P(3) = 9.4e-12
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 114 SSREQSFGNSQP-----ADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTI 167
+SR+ S G+ P AD R+L P++ +G +IGK G ++++ ++TQ+KI V
Sbjct: 180 TSRQMSPGSGIPSKHQHADIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 239
Query: 168 PGSEERVIIIYSSP 181
G+ E+ I I+S+P
Sbjct: 240 AGAAEKPISIHSTP 253
Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 25/108 (23%), Positives = 45/108 (41%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G ++++ I RLLVP VG ++GK G I+ + +T + I V + A
Sbjct: 187 GSGIPSKHQHADIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGA 242
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFP-QAYGGQNF 334
++ + I P A + +++Q + K P + NF
Sbjct: 243 AEKPISIHSTPEGCSAACRMILEIMNQEAKDTKTADEVPLKVLAHNNF 290
Score = 71 (30.1 bits), Expect = 9.4e-12, Sum P(3) = 9.4e-12
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D + ++L NN VG L+GK G ++++ +T I + P L N + +
Sbjct: 273 DTKTADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISPLQDLT--LYNPERTI 330
Query: 293 QISG 296
+ G
Sbjct: 331 TVKG 334
Score = 65 (27.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 23/106 (21%), Positives = 50/106 (47%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
+++ ++ EE+ FG E + + V G ++GK G + L++ T A +
Sbjct: 471 RIYGKLKEENFFG------PKEEVKLETHIKVAAAAAGRVIGKGGKTVNELQNLTAAEV- 523
Query: 275 VLPADRLPPCAMNTDEMVQISGK---PNVAKRALYEVSTLLHQNPR 317
V+P ++ P + +V+I G +A+R + ++ T + Q +
Sbjct: 524 VVPREQTPD--EHDQVIVKIIGHFYASQLAQRKIRDILTQVKQQQK 567
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 138 (53.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 53/214 (24%), Positives = 92/214 (42%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNI--NPXXXXXXXXXXXXXXYQNMNT 592
I G + +I Q + +++ P I P Y T
Sbjct: 147 TIAGIPQSIIEC--VKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQAY----T 200
Query: 593 QQSPYHRVNAQQSPYQNINPQQSSYPMHTHQGAG 626
Q Y + + QQS +PM TH G
Sbjct: 201 IQGQYAIPQPDLTKLHQLAMQQSHFPM-THGNTG 233
Score = 131 (51.2 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 48/160 (30%), Positives = 75/160 (46%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTL----LHQNPRKD- 319
+R TGA ++V D LP +T+ + I+G P + ++ + L Q+P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Query: 320 ----KP-PSSFP------QAYGGQNFHSPPAP-MADMHPL 347
+P PSS P QAY Q ++ P P + +H L
Sbjct: 179 TIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQL 218
Score = 119 (46.9 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 109 (43.4 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 210 QDALLKVHDRIIEEDLF----G--GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQ 263
Q L K+H +++ F G G ++ D T + L +PN+++GC++G++G I
Sbjct: 209 QPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKIN 268
Query: 264 RLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
+R +GA I++ A+ P +TD V I+G A Y ++ L
Sbjct: 269 EIRQMSGAQIKI--AN---PVEGSTDRQVTITGSAASISLAQYLINVRL 312
Score = 95 (38.5 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 244 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 296
Query: 539 SS 540
S+
Sbjct: 297 SA 298
Score = 93 (37.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 98 (39.6 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 40/158 (25%), Positives = 62/158 (39%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLL+ ++ G ++G +G I+ LR T I++ C TD +V I GKP+
Sbjct: 124 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHPTDRVVLIGGKPDRVV 179
Query: 303 RALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMADMHPLGNSSWPA 354
+ + L+ ++P K + P P+ + + Y GG F G +
Sbjct: 180 ECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDK 239
Query: 355 RNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G P P Y D R G PPG+ G
Sbjct: 240 MPPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 274
Score = 92 (37.4 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+L + A ++V D+ ER+
Sbjct: 30 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDS--SGPERI 87
Query: 175 IIIYSSPTKIAKTQNK 190
+ I + I + K
Sbjct: 88 LSISADIETIGEILKK 103
Score = 91 (37.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ + ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 351 GGRGSYGDLGGPIITTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKI---DE--PLEG 405
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 406 SEDRVITITGTQDQIQNAPYLLQNSVKQ 433
Score = 88 (36.0 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ + G I+G+GG I ++R + GA +K+ +P GS + ++ I G+
Sbjct: 364 ITTQVTISKDLAGSIIGKGGRRIKQVRHES-------GASIKIDEPLEGSEDRVITITGT 416
Query: 540 SEHLISA 546
+ + +A
Sbjct: 417 QDQIQNA 423
Score = 86 (35.3 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L GG+IG G +K LRE TQ I + + P +RV++I P ++
Sbjct: 120 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHPTDRVVLIGGKPDRVV 179
Query: 186 K 186
+
Sbjct: 180 E 180
Score = 67 (28.6 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++RVI + + Q +A LQN ++S K
Sbjct: 386 IKQVRHESGASIKIDEPLEGSEDRVITITGTQ------DQIQNAPYLLQNSVKQYSGK 437
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 136 (52.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 51/170 (30%), Positives = 78/170 (45%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTL----LHQNPRKD- 319
+R TGA ++V D LP +T+ + I+G P + ++ + L Q+P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Query: 320 ----KP-PSSFPQAY-GGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP 363
+P PSS P + GGQ+ +S + A P S N L G P
Sbjct: 179 TIPYRPKPSSSPVIFAGGQDRYSTGSDSASF-PHTTPSM-CLNPDLEGPP 226
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 109 (43.4 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 210 QDALLKVHDRIIEEDLF----G--GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQ 263
Q L K+H +++ F G G ++ D T + L +PN+++GC++G++G I
Sbjct: 240 QPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKIN 299
Query: 264 RLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
+R +GA I++ A+ P +TD V I+G A Y ++ L
Sbjct: 300 EIRQMSGAQIKI--AN---PVEGSTDRQVTITGSAASISLAQYLINVRL 343
Score = 95 (38.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 275 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 327
Query: 539 SS 540
S+
Sbjct: 328 SA 329
Score = 93 (37.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 133 (51.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 50/168 (29%), Positives = 77/168 (45%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 45 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 103
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTL----LHQNPRKD- 319
+R TGA ++V D LP +T+ + I+G P + ++ + L Q+P K
Sbjct: 104 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 159
Query: 320 ----KP-PSSFPQAY-GGQNFHSPPAPMADMH-PL--GNSSWPARNSS 358
+P PSS P + GGQ M H P+ GN+ + SS
Sbjct: 160 TIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESS 207
Score = 133 (51.9 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 16 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 73
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 74 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 127
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 128 TIAGIPQSII 137
Score = 119 (46.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 45 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 103
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 104 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 136
Score = 102 (41.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I++ A+ P +TD V
Sbjct: 218 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI--AN---PVEGSTDRQVT 272
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 273 ITGSAASISLAQYLINVRL 291
Score = 95 (38.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 223 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 275
Query: 539 SS 540
S+
Sbjct: 276 SA 277
Score = 84 (34.6 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 137 RKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAA 196
+++G +IGK G VK +REE+ A+I +++ ER+I + I K D
Sbjct: 4 KEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLE 61
Query: 197 ETKKESMEPHCAA 209
E SM AA
Sbjct: 62 EDISSSMTNSTAA 74
Score = 68 (29.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 251 VGCLLGKRGDVIQRLRSETGANIRV 275
VG ++GK+G+ ++++R E+GA I +
Sbjct: 6 VGSIIGKKGESVKKMREESGARINI 30
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 136 (52.9 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 51/170 (30%), Positives = 78/170 (45%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTL----LHQNPRKD- 319
+R TGA ++V D LP +T+ + I+G P + ++ + L Q+P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Query: 320 ----KP-PSSFPQAY-GGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP 363
+P PSS P + GGQ+ +S + A P S N L G P
Sbjct: 179 TIPYRPKPSSSPVIFAGGQDRYSTGSDSASF-PHTTPSM-CLNPDLEGPP 226
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 102 (41.0 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I++ A+ P +TD V
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI--AN---PVEGSTDRQVT 336
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 337 ITGSAASISLAQYLINVRL 355
Score = 95 (38.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 339
Query: 539 SS 540
S+
Sbjct: 340 SA 341
Score = 93 (37.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 136 (52.9 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 51/170 (30%), Positives = 78/170 (45%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTL----LHQNPRKD- 319
+R TGA ++V D LP +T+ + I+G P + ++ + L Q+P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Query: 320 ----KP-PSSFPQAY-GGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP 363
+P PSS P + GGQ+ +S + A P S N L G P
Sbjct: 179 TIPYRPKPSSSPVIFAGGQDRYSTGSDSASF-PHTTPSM-CLNPDLEGPP 226
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 102 (41.0 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I++ A+ P +TD V
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI--AN---PVEGSTDRQVT 336
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 337 ITGSAASISLAQYLINVRL 355
Score = 95 (38.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 339
Query: 539 SS 540
S+
Sbjct: 340 SA 341
Score = 93 (37.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 133 (51.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 50/168 (29%), Positives = 77/168 (45%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTL----LHQNPRKD- 319
+R TGA ++V D LP +T+ + I+G P + ++ + L Q+P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Query: 320 ----KP-PSSFPQAY-GGQNFHSPPAPMADMH-PL--GNSSWPARNSS 358
+P PSS P + GGQ M H P+ GN+ + SS
Sbjct: 179 TIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESS 226
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 102 (41.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I++ A+ P +TD V
Sbjct: 238 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI--AN---PVEGSTDRQVT 292
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 293 ITGSAASISLAQYLINVRL 311
Score = 95 (38.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 243 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 295
Query: 539 SS 540
S+
Sbjct: 296 SA 297
Score = 93 (37.8 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
Score = 92 (37.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDISSSMTNSTAA 93
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 112 (44.5 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 44/157 (28%), Positives = 73/157 (46%)
Query: 419 NVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
++KQL + GASI + A P S+ VI E + + + I L+ +N + E
Sbjct: 442 HIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR-IFGKLKEENFFNP-KE 499
Query: 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
+ + + VPSS G ++G+GG +NE++ T A++ V + Q P + E IV I
Sbjct: 500 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP----RDQTPDE-NEEVIVRI 554
Query: 537 RGSSEHLISAHGTYQSFMTSGQSMKVQPSSY-QNINP 572
G H ++ + Q +K Q Y Q + P
Sbjct: 555 IG---HFFASQTAQRKIREIVQQVKQQAQKYPQGVAP 588
Score = 95 (38.5 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 115 SREQSFG---NSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIP 168
+REQ G +SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 169 AREQGHGPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 228
Query: 169 GSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 229 GAAEKPVTIHATP 241
Score = 91 (37.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +P VG ++GK+G I++L GA+I++ PA+ P + + MV I+G P
Sbjct: 422 TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEA 477
Query: 301 AKRA 304
+A
Sbjct: 478 QFKA 481
Score = 88 (36.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 28/109 (25%), Positives = 53/109 (48%)
Query: 225 LFGGMASDD---DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281
+FG + ++ E + A + VP++ G ++GK G + L++ T A + ++P D+
Sbjct: 485 IFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQT 543
Query: 282 PPCAMNTDEMVQISGK---PNVAKRALYEVSTLLHQNPRKDKPPSSFPQ 327
P N + +V+I G A+R + E+ + Q +K P PQ
Sbjct: 544 PD--ENEEVIVRIIGHFFASQTAQRKIREIVQQVKQQAQK-YPQGVAPQ 589
Score = 73 (30.8 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 19/84 (22%), Positives = 35/84 (41%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ + ++L N VG L+GK G ++++ ETG I + L N +
Sbjct: 259 ADETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 316
Query: 291 MVQISGKPNVAKRALYEVSTLLHQ 314
+ + G A E+ L +
Sbjct: 317 TITVKGTIEACASAEMEIMKKLRE 340
Score = 71 (30.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 22/68 (32%), Positives = 31/68 (45%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ VG I+G+ G I ++ R A I++ A P SE +V I G
Sbjct: 422 TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAE------GPDVSERMVIITGPP 475
Query: 541 EHLISAHG 548
E A G
Sbjct: 476 EAQFKAQG 483
Score = 66 (28.3 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
G S R+LVP VG ++GK G I+ + +T + + +
Sbjct: 175 GPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 222
Score = 63 (27.2 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA 164
+IL + +G +IGK G +K + ET KIT++
Sbjct: 271 KILAHNGFVGRLIGKEGRNLKKIEHETGTKITIS 304
Score = 44 (20.5 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 393 EVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHV---EDAPTDSDERVI 445
+++ E +KIL N+K+++ ETG I + +D + ER I
Sbjct: 263 KLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTI 318
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 116 (45.9 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
++EDL A+ + +T RL++P + G L+GK G I+ +R TGA ++V D
Sbjct: 83 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA-GDL 141
Query: 281 LPPCAMNTDEMVQISGKPN 299
LP +T+ V +SG P+
Sbjct: 142 LPN---STERAVTVSGVPD 157
Score = 116 (45.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 121 GN-SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIY 178
GN S+P T+ R++ P+ + G +IGKAG +K +RE T A++ VA D +P S ER + +
Sbjct: 95 GNVSRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Query: 179 SSPTKI 184
P I
Sbjct: 154 GVPDAI 159
Score = 93 (37.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+T RL++P+S+ G ++G+ G I E+R T A ++V G D P S+E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG------DLLPNSTERAVTVSGV 155
Query: 540 SEHLI 544
+ +I
Sbjct: 156 PDAII 160
Score = 90 (36.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 86 (35.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 227 GGMASDDDNENS-TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
GG+ +++ E S T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 6 GGL--EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 111 (44.1 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 44/157 (28%), Positives = 73/157 (46%)
Query: 419 NVKQLQQETGASIHVEDA--PTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
++KQL + GASI + A P S+ VI E + + + I L+ +N + E
Sbjct: 442 HIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR-IFGKLKEENFFNP-KE 499
Query: 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
+ + + VPSS G ++G+GG +NE++ T A++ V + Q P + E IV I
Sbjct: 500 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP----RDQTPDE-NEEVIVRI 554
Query: 537 RGSSEHLISAHGTYQSFMTSGQSMKVQPSSY-QNINP 572
G H ++ + Q +K Q Y Q + P
Sbjct: 555 IG---HFFASQTAQRKIREIVQQVKQQEQRYPQGVAP 588
Score = 95 (38.5 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 115 SREQSFG---NSQPA--DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIP 168
+REQ G +SQ D RIL P++ +G +IGK G +K++ ++TQ+++ +
Sbjct: 169 AREQGHGPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 228
Query: 169 GSEERVIIIYSSP 181
G+ E+ + I+++P
Sbjct: 229 GAAEKPVTIHATP 241
Score = 91 (37.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +P VG ++GK+G I++L GA+I++ PA+ P + + MV I+G P
Sbjct: 422 TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEA 477
Query: 301 AKRA 304
+A
Sbjct: 478 QFKA 481
Score = 85 (35.0 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 25/108 (23%), Positives = 55/108 (50%)
Query: 225 LFGGMASDD---DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281
+FG + ++ E + A + VP++ G ++GK G + L++ T A + ++P D+
Sbjct: 485 IFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQT 543
Query: 282 PPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK--PPSSFPQ 327
P N + +V+I G ++ A ++ ++ Q ++++ P PQ
Sbjct: 544 PD--ENEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQRYPQGVAPQ 589
Score = 73 (30.8 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 19/84 (22%), Positives = 35/84 (41%)
Query: 231 SDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
+D+ + ++L N VG L+GK G ++++ ETG I + L N +
Sbjct: 259 ADETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPER 316
Query: 291 MVQISGKPNVAKRALYEVSTLLHQ 314
+ + G A E+ L +
Sbjct: 317 TITVRGTIEACANAEIEIMKKLRE 340
Score = 71 (30.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 22/68 (32%), Positives = 31/68 (45%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P+ VG I+G+ G I ++ R A I++ A P SE +V I G
Sbjct: 422 TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAE------GPDVSERMVIITGPP 475
Query: 541 EHLISAHG 548
E A G
Sbjct: 476 EAQFKAQG 483
Score = 66 (28.3 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
G S R+LVP VG ++GK G I+ + +T + + +
Sbjct: 175 GPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 222
Score = 63 (27.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA 164
+IL + +G +IGK G +K + ET KIT++
Sbjct: 271 KILAHNGFVGRLIGKEGRNLKKIEHETGTKITIS 304
Score = 44 (20.5 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 393 EVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHV---EDAPTDSDERVI 445
+++ E +KIL N+K+++ ETG I + +D + ER I
Sbjct: 263 KLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTI 318
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 126 (49.4 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 45/197 (22%), Positives = 92/197 (46%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDS 194
P + +G VIG+ G V+++ +++ ++ V + R++ IY P I + + +
Sbjct: 62 PEQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSSTGFRLVEIYGIPENIERAKAYISEV 121
Query: 195 AAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCL 254
++ P C ++ V I+ + D + S IT + +P N G +
Sbjct: 122 VTRGTRQP-GPLC---QPVVHVQTHGIKSPVV------DQGDPSKITIEIPIPANKCGAI 171
Query: 255 LGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+GK G+ +++LRS T N+++L + + +T + ++I+G P ++ V+ +L
Sbjct: 172 IGKGGEQMRKLRSWTNCNVQLLQDNNIA----DTVKPLKITGDPKQVEQCRLLVADILAC 227
Query: 315 NPRKDKPPSSFPQAYGG 331
N D P+S A G
Sbjct: 228 N---DDTPASAMMAGNG 241
Score = 110 (43.8 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 59/233 (25%), Positives = 90/233 (38%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKG 478
N+K+L ETG I P D + + R+ A G N I + SE +
Sbjct: 267 NIKKLSDETGTKIQF--LPDDDPKLMERSLAIIGNKNKVYVCAQLIKAIVEANSEAANAP 324
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKL-QDPHPGSSECIVDIR 537
+ +++P+SK G ++G+GG I ++ + + GA +L +DP+ E IR
Sbjct: 325 VVLFYMVIPASKCGLVIGRGGETIKQINQES-------GAHCELSRDPNTNPIEKTFVIR 377
Query: 538 GSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQNMNTQQSPY 597
GS + H + + G P + + P N+ QQ P
Sbjct: 378 GSEAQV--EHAKHLIRVKVGDIPPNTPYTPAGM-PQPQPQQQPPQMVQVQPNLQGQQ-PN 433
Query: 598 HRVNAQQSPYQNINPQQSSYPMHTHQG-AGTNPHITPTQXXXXXXXAQQGTYP 649
++ A Q Q PQQ P H HQ A +P P Q Q YP
Sbjct: 434 MQMWAGQPLVQQ--PQQ---PHHIHQQPAQLHPVQLP-QVMAPPGYPTQAAYP 480
Score = 82 (33.9 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 192 DDSAAETKKE---SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPN 248
D++ A+T K + +P Q LL +D + +T++ ++ VP
Sbjct: 195 DNNIADTVKPLKITGDPKQVEQCRLLVADILACNDDTPASAMMAGNGPVATMSLQVKVPR 254
Query: 249 NMVGCLLGKRGDVIQRLRSETGANIRVLPAD 279
VG ++G +G I++L ETG I+ LP D
Sbjct: 255 CTVGAIMGLQGKNIKKLSDETGTKIQFLPDD 285
Score = 73 (30.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D + + VP VG ++G+ G +Q + ++G ++V + P + +V+
Sbjct: 49 DQNGLIVKVAVPVPEQCVGLVIGRNGAEVQAISQKSGCRVQVT----VQPSSTGF-RLVE 103
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRKDKP 321
I G P +RA +S ++ + R+ P
Sbjct: 104 IYGIPENIERAKAYISEVVTRGTRQPGP 131
Score = 63 (27.2 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKI------TVADTI 167
P+ I P+ K G +IGK G ++ LR T + +ADT+
Sbjct: 154 PSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTV 202
Score = 45 (20.9 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIR 514
T++ ++ VP VG I+G G I ++ T I+
Sbjct: 245 TMSLQVKVPRCTVGAIMGLQGKNIKKLSDETGTKIQ 280
Score = 38 (18.4 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 594 QSPYHRVN-AQQSPYQNINPQQSSY 617
Q+ Y + + A P Q PQQ Y
Sbjct: 482 QAVYQQTSVAAWHPMQQAQPQQQQY 506
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 124 QPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
QP D R+L P++ +G +IGK G ++++ ++TQ+KI V G+ E+ I ++S+P
Sbjct: 192 QPVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTP 250
Score = 98 (39.6 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F- 474
++KQL + ASI + AP ++ + +R G P +Q A ++ K E F
Sbjct: 427 HIKQLSRFASASIKI--APPETPDSKVRMVVITG--PPEAQ-FKAQGRIYGKLKEENFFG 481
Query: 475 -SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
E+ + T + VP+S G ++G+GG +NE++ T A++ V
Sbjct: 482 PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
Score = 89 (36.4 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 37/151 (24%), Positives = 65/151 (43%)
Query: 179 SSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENS 238
S+ KIA + D E AQ +++ ++ EE+ FG E
Sbjct: 436 SASIKIAPPETPDSKVRMVVITGPPEAQFKAQG---RIYGKLKEENFFG------PKEEV 486
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
+ + VP + G ++GK G + L++ T A + V+P D+ P N +V+I G
Sbjct: 487 KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENDQVIVKIIGHF 543
Query: 299 NVAKRALYEVSTLLHQ-NPRKDKPPSSFPQA 328
++ A ++ +L Q + K S+ QA
Sbjct: 544 YASQMAQRKIRDILAQVKQQHQKGQSNLAQA 574
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I RLLVP VG ++GK G I+ + +T + I V + A ++ + + P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISVHSTPE 251
Query: 300 VAKRALYEVSTLLHQNPRKDKPPSSFP 326
A + ++H+ + K P
Sbjct: 252 GCSSACKMILEIMHKEAKDTKTADEVP 278
Score = 73 (30.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
++ +P VG ++GK+G I++L A+I++ P + P + MV I+G P
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET-PDSKVR---MVVITGPPEAQF 464
Query: 303 RA 304
+A
Sbjct: 465 KA 466
Score = 73 (30.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 122 NSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIII 177
+++ AD V +IL + +G +IGK G +K + ++T+ KIT++ D + ER I +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITV 329
Score = 68 (29.0 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 30/138 (21%), Positives = 53/138 (38%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D + ++L NN VG L+GK G ++++ +T I + L N + +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLT--LYNPERTI 327
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQ-AYGGQNFHSPPAPMADMHPLGNSS 351
+ G RA E+ + + D S G N + + P +S+
Sbjct: 328 TVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAA-----VGLFPASSSA 382
Query: 352 WPARNSSLHGM-PSTPWM 368
P SS+ G P + +M
Sbjct: 383 VPPPPSSVTGAAPYSSFM 400
Score = 61 (26.5 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
++ +P+ VG I+G+ G I ++ R A I++ P S +V I G E
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVVITGPPEA 462
Query: 543 LISAHG 548
A G
Sbjct: 463 QFKAQG 468
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 136 (52.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 37/130 (28%), Positives = 72/130 (55%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAILQLQNKT---SEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + ++ + + S
Sbjct: 35 SVKKMREESGAGINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEVISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 128 (50.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 43/153 (28%), Positives = 71/153 (46%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EE + M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEVISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD----- 319
+R TGA ++V D LP +T+ + I+G P + ++ ++ P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLDPPSKGVTIPY 178
Query: 320 KP-PSSFPQAYGG---QNFHSPPAP-MADMHPL 347
+P PSS P + G Q ++ P P + +H L
Sbjct: 179 RPKPSSSPVIFAGGTIQGQYAIPQPDLTKLHQL 211
Score = 120 (47.3 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEVISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 95 (38.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 237 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 289
Query: 539 SS 540
S+
Sbjct: 290 SA 291
Score = 93 (37.8 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINI 49
Score = 89 (36.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGAGINISEG--NCPERIITLAGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEVISSSMTNSTAA 93
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 35/124 (28%), Positives = 68/124 (54%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTIDAILQLQNKT---SEF 474
+VK++++E+GA I++ + + ER+I + ++ + ID + + N + S
Sbjct: 35 SVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+++ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRG 538
I G
Sbjct: 147 TIAG 150
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K NSS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKIAK 186
+RE T A++ VA D +P S ER I I P + +
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Score = 120 (47.3 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 51/197 (25%), Positives = 85/197 (43%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSS 324
+R TGA ++V D LP +T+ + I+G P + ++ ++ + S
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGVPQSVTECVKQICLVMLETL------SQ 172
Query: 325 FPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP-STPWMGGYG-DQPSRMGSGS 382
PQ G+ P PM P+ + R S G P +T + G D S G +
Sbjct: 173 SPQ---GRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHT 229
Query: 383 INSCPPGQMGEVSAEFS 399
I+ ++ +V+ + S
Sbjct: 230 ISPLDLAKLNQVARQQS 246
Score = 99 (39.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 476 EKGTITTR-LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ T TT L +P++ +GCI+G+ G INE+R+ + GA++K+ +P GSS V
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS-------GAQIKIANPVEGSSGRQV 327
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSM 560
I GS+ + A + ++S + M
Sbjct: 328 TITGSAASISLAQYLINARLSSEKGM 353
Score = 96 (38.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++R+R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
Score = 93 (37.8 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +PNN++GC++G++G I +R +GA I++ A+ P ++ V I+G
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI--AN---PVEGSSGRQVTITGSAAS 335
Query: 301 AKRALYEVSTLL 312
A Y ++ L
Sbjct: 336 ISLAQYLINARL 347
Score = 91 (37.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDINSSMTNSTAA 93
Score = 37 (18.1 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVI 445
N+ +++Q +GA I + + S R +
Sbjct: 301 NINEIRQMSGAQIKIANPVEGSSGRQV 327
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 35/124 (28%), Positives = 68/124 (54%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTIDAILQLQNKT---SEF 474
+VK++++E+GA I++ + + ER+I + ++ + ID + + N + S
Sbjct: 35 SVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+++ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRG 538
I G
Sbjct: 147 TIAG 150
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K NSS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKIAK 186
+RE T A++ VA D +P S ER I I P + +
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Score = 119 (46.9 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 51/197 (25%), Positives = 85/197 (43%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSS 324
+R TGA ++V D LP +T+ + I+G P + ++ ++ + S
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGVPQSVTECVKQICLVMLETL------SQ 172
Query: 325 FPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP-STPWMGGYG-DQPSRMGSGS 382
PQ G+ P PM P+ + R S G P +T + G D S G +
Sbjct: 173 SPQ---GRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHT 229
Query: 383 INSCPPGQMGEVSAEFS 399
I+ ++ +V+ + S
Sbjct: 230 ISPLDLAKLNQVARQQS 246
Score = 99 (39.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 476 EKGTITTR-LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ T TT L +P++ +GCI+G+ G INE+R+ + GA++K+ +P GSS V
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS-------GAQIKIANPVEGSSGRQV 327
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSM 560
I GS+ + A + ++S + M
Sbjct: 328 TITGSAASISLAQYLINARLSSEKGM 353
Score = 96 (38.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++R+R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
Score = 93 (37.8 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +PNN++GC++G++G I +R +GA I++ A+ P ++ V I+G
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI--AN---PVEGSSGRQVTITGSAAS 335
Query: 301 AKRALYEVSTLL 312
A Y ++ L
Sbjct: 336 ISLAQYLINARL 347
Score = 91 (37.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDINSSMTNSTAA 93
Score = 37 (18.1 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVI 445
N+ +++Q +GA I + + S R +
Sbjct: 301 NINEIRQMSGAQIKIANPVEGSSGRQV 327
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 35/124 (28%), Positives = 68/124 (54%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTIDAILQLQNKT---SEF 474
+VK++++E+GA I++ + + ER+I + ++ + ID + + N + S
Sbjct: 35 SVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+++ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRG 538
I G
Sbjct: 147 TIAG 150
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K NSS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKIAK 186
+RE T A++ VA D +P S ER I I P + +
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Score = 119 (46.9 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 51/197 (25%), Positives = 85/197 (43%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSS 324
+R TGA ++V D LP +T+ + I+G P + ++ ++ + S
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGVPQSVTECVKQICLVMLETL------SQ 172
Query: 325 FPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP-STPWMGGYG-DQPSRMGSGS 382
PQ G+ P PM P+ + R S G P +T + G D S G +
Sbjct: 173 SPQ---GRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHT 229
Query: 383 INSCPPGQMGEVSAEFS 399
I+ ++ +V+ + S
Sbjct: 230 ISPLDLAKLNQVARQQS 246
Score = 99 (39.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 476 EKGTITTR-LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ T TT L +P++ +GCI+G+ G INE+R+ + GA++K+ +P GSS V
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS-------GAQIKIANPVEGSSGRQV 327
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSM 560
I GS+ + A + ++S + M
Sbjct: 328 TITGSAASISLAQYLINARLSSEKGM 353
Score = 96 (38.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++R+R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
Score = 93 (37.8 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +PNN++GC++G++G I +R +GA I++ A+ P ++ V I+G
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI--AN---PVEGSSGRQVTITGSAAS 335
Query: 301 AKRALYEVSTLL 312
A Y ++ L
Sbjct: 336 ISLAQYLINARL 347
Score = 91 (37.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDINSSMTNSTAA 93
Score = 37 (18.1 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVI 445
N+ +++Q +GA I + + S R +
Sbjct: 301 NINEIRQMSGAQIKIANPVEGSSGRQV 327
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 35/124 (28%), Positives = 68/124 (54%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTIDAILQLQNKT---SEF 474
+VK++++E+GA I++ + + ER+I + ++ + ID + + N + S
Sbjct: 35 SVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+++ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRG 538
I G
Sbjct: 147 TIAG 150
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K NSS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKIAK 186
+RE T A++ VA D +P S ER I I P + +
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Score = 119 (46.9 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 51/197 (25%), Positives = 85/197 (43%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSS 324
+R TGA ++V D LP +T+ + I+G P + ++ ++ + S
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGVPQSVTECVKQICLVMLETL------SQ 172
Query: 325 FPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP-STPWMGGYG-DQPSRMGSGS 382
PQ G+ P PM P+ + R S G P +T + G D S G +
Sbjct: 173 SPQ---GRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHT 229
Query: 383 INSCPPGQMGEVSAEFS 399
I+ ++ +V+ + S
Sbjct: 230 ISPLDLAKLNQVARQQS 246
Score = 99 (39.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 476 EKGTITTR-LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ T TT L +P++ +GCI+G+ G INE+R+ + GA++K+ +P GSS V
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS-------GAQIKIANPVEGSSGRQV 327
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSM 560
I GS+ + A + ++S + M
Sbjct: 328 TITGSAASISLAQYLINARLSSEKGM 353
Score = 96 (38.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++R+R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
Score = 93 (37.8 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +PNN++GC++G++G I +R +GA I++ A+ P ++ V I+G
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI--AN---PVEGSSGRQVTITGSAAS 335
Query: 301 AKRALYEVSTLL 312
A Y ++ L
Sbjct: 336 ISLAQYLINARL 347
Score = 91 (37.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDINSSMTNSTAA 93
Score = 37 (18.1 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVI 445
N+ +++Q +GA I + + S R +
Sbjct: 301 NINEIRQMSGAQIKIANPVEGSSGRQV 327
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 35/124 (28%), Positives = 68/124 (54%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTIDAILQLQNKT---SEF 474
+VK++++E+GA I++ + + ER+I + ++ + ID + + N + S
Sbjct: 35 SVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+++ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRG 538
I G
Sbjct: 147 TIAG 150
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K NSS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKIAK 186
+RE T A++ VA D +P S ER I I P + +
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Score = 119 (46.9 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 51/197 (25%), Positives = 85/197 (43%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSS 324
+R TGA ++V D LP +T+ + I+G P + ++ ++ + S
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGVPQSVTECVKQICLVMLETL------SQ 172
Query: 325 FPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP-STPWMGGYG-DQPSRMGSGS 382
PQ G+ P PM P+ + R S G P +T + G D S G +
Sbjct: 173 SPQ---GRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHT 229
Query: 383 INSCPPGQMGEVSAEFS 399
I+ ++ +V+ + S
Sbjct: 230 ISPLDLAKLNQVARQQS 246
Score = 99 (39.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 476 EKGTITTR-LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ T TT L +P++ +GCI+G+ G INE+R+ + GA++K+ +P GSS V
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS-------GAQIKIANPVEGSSGRQV 327
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSM 560
I GS+ + A + ++S + M
Sbjct: 328 TITGSAASISLAQYLINARLSSEKGM 353
Score = 96 (38.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++R+R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
Score = 93 (37.8 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +PNN++GC++G++G I +R +GA I++ A+ P ++ V I+G
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI--AN---PVEGSSGRQVTITGSAAS 335
Query: 301 AKRALYEVSTLL 312
A Y ++ L
Sbjct: 336 ISLAQYLINARL 347
Score = 91 (37.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDINSSMTNSTAA 93
Score = 37 (18.1 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVI 445
N+ +++Q +GA I + + S R +
Sbjct: 301 NINEIRQMSGAQIKIANPVEGSSGRQV 327
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 35/124 (28%), Positives = 68/124 (54%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTIDAILQLQNKT---SEF 474
+VK++++E+GA I++ + + ER+I + ++ + ID + + N + S
Sbjct: 35 SVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+++ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRG 538
I G
Sbjct: 147 TIAG 150
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K NSS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKIAK 186
+RE T A++ VA D +P S ER I I P + +
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Score = 118 (46.6 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 39/160 (24%), Positives = 66/160 (41%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSS 324
+R TGA ++V D LP +T+ + I+G P + ++ ++ + +
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRV 178
Query: 325 FPQAYGGQNFHSPPAPMADMHPLGNSS-WPARNSSLHGMP 363
Y SP G+++ +P L G P
Sbjct: 179 MTIPYQPMPASSPVICAGGQDRCGDAAGYPHATHDLEGPP 218
Score = 99 (39.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 476 EKGTITTR-LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ T TT L +P++ +GCI+G+ G INE+R+ + GA++K+ +P GSS V
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS-------GAQIKIANPVEGSSGRQV 327
Query: 535 DIRGSSEHLISAHGTYQSFMTSGQSM 560
I GS+ + A + ++S + M
Sbjct: 328 TITGSAASISLAQYLINARLSSEKGM 353
Score = 96 (38.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++R+R E+GA I +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
Score = 93 (37.8 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +PNN++GC++G++G I +R +GA I++ A+ P ++ V I+G
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI--AN---PVEGSSGRQVTITGSAAS 335
Query: 301 AKRALYEVSTLL 312
A Y ++ L
Sbjct: 336 ISLAQYLINARL 347
Score = 91 (37.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + I K
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKAFAM 74
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 75 IIDKLEEDINSSMTNSTAA 93
Score = 37 (18.1 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVI 445
N+ +++Q +GA I + + S R +
Sbjct: 301 NINEIRQMSGAQIKIANPVEGSSGRQV 327
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 107 (42.7 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 28/103 (27%), Positives = 48/103 (46%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
+ + RLL+ ++ GC++GK G I+ +R G + ++ P +TD +VQ
Sbjct: 89 EERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP---QSTDRVVQ 145
Query: 294 ISGKPNVAKRALYEVSTLLHQNPRK----DKPPSSFPQAYGGQ 332
GK + A+ EV TL P K + P +F + Y +
Sbjct: 146 TVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVYADE 188
Score = 99 (39.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D NST ++ +P + G ++GK G I+R+R+E+ A I + D P + D ++
Sbjct: 418 DPNNST---QVTIPKELAGAIIGKGGGRIRRIRNESSAYITI---DE--PLPNSNDRIIT 469
Query: 294 ISGKPNVAKRALYEVSTLLHQ 314
ISG P + A Y + +H+
Sbjct: 470 ISGTPKQIQMAQYLLQQSVHE 490
Score = 82 (33.9 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 122 NSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVII 176
N + +TV RIL PS G VIGK G ++ +R + +A ++V D+ G E + I
Sbjct: 18 NRRSEETV-RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS-QGPERTIQI 70
Score = 81 (33.6 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS- 539
+T++ +P G I+G+GG I +R + A I + +P P S++ I+ I G+
Sbjct: 422 STQVTIPKELAGAIIGKGGGRIRRIRNESSAYITI-------DEPLPNSNDRIITISGTP 474
Query: 540 -----SEHLI--SAHGTYQSFMTSGQSMK 561
+++L+ S H +Q+ SGQ ++
Sbjct: 475 KQIQMAQYLLQQSVHEEWQAKHLSGQGLE 503
Score = 45 (20.9 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 26/132 (19%), Positives = 48/132 (36%)
Query: 324 SFPQAYGGQNFHSPPAPMADMHP-----LGNSSWPARNSSLHGMPSTPWMGGYGDQPSRM 378
SF Q GG + P +P LGN N + + GG+
Sbjct: 342 SFSQNQGGTS-SLPSLGSFGQNPGGPGGLGNGLSGGANGGVGALGGANGAGGFNAVGGAN 400
Query: 379 G--SGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDA 436
G +GS N+ G S ++ +++++ E+ A I +++
Sbjct: 401 GGPNGSPNAATNVPQGH-DPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEP 459
Query: 437 PTDSDERVIRAS 448
+S++R+I S
Sbjct: 460 LPNSNDRIITIS 471
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 101 (40.6 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 124 QPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
Q D R+L P++ +G +IGK G ++++ ++TQ+KI V G+ E+ I ++S+P
Sbjct: 192 QQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTP 250
Score = 100 (40.3 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 34/141 (24%), Positives = 63/141 (44%)
Query: 380 SGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTD 439
S + P G + + +++ A ++KQL + ASI + AP +
Sbjct: 388 SSVTGAAPYGSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI--APPE 445
Query: 440 SDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F--SEKGTITTRLLVPSSKVGCI 494
+ + +R G P +Q A ++ K E F E+ + T + VP+S G +
Sbjct: 446 TPDSKVRMVVITG--PPEAQ-FKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRV 502
Query: 495 LGQGGHVINEMRRRTQADIRV 515
+G+GG +NE++ T A++ V
Sbjct: 503 IGKGGKTVNELQNLTAAEVVV 523
Score = 86 (35.3 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 37/151 (24%), Positives = 65/151 (43%)
Query: 179 SSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENS 238
S+ KIA + D E AQ +++ ++ EE+ FG E
Sbjct: 436 SASIKIAPPETPDSKVRMVVITGPPEAQFKAQG---RIYGKLKEENFFG------PKEEV 486
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
+ + VP + G ++GK G + L++ T A + V+P D+ P N +V+I G
Sbjct: 487 KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENDQVIVKIIGHF 543
Query: 299 NVAKRALYEVSTLLHQ-NPRKDKPPSSFPQA 328
++ A ++ +L Q + K S+ QA
Sbjct: 544 YASQMAQRKIRDILAQVKQQHQKGQSNQAQA 574
Score = 81 (33.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I RLLVP VG ++GK G I+ + +T + I V + A ++ + + P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISVHSTPE 251
Query: 300 VAKRALYEVSTLLHQNPRKDKPPSSFP 326
A + ++H+ + K P
Sbjct: 252 GCSSACKMILEIMHKEAKDTKTADEVP 278
Score = 73 (30.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
++ +P VG ++GK+G I++L A+I++ P + P + MV I+G P
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET-PDSKVR---MVVITGPPEAQF 464
Query: 303 RA 304
+A
Sbjct: 465 KA 466
Score = 73 (30.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 122 NSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIII 177
+++ AD V +IL + +G +IGK G +K + ++T+ KIT++ D + ER I +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITV 329
Score = 70 (29.7 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 31/146 (21%), Positives = 56/146 (38%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D + ++L NN VG L+GK G ++++ +T I + L N + +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLT--LYNPERTI 327
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQ-AYGGQNFHSPPAPMADMHPLGNSS 351
+ G RA E+ + + D S G N + + P +S+
Sbjct: 328 TVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAA-----VGLFPASSSA 382
Query: 352 WPARNSSLHGMPSTPWMGGYGDQPSR 377
P SS+ G + P+ G + P +
Sbjct: 383 VPPPPSSVTG--AAPY-GSFMQAPEQ 405
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 123 (48.4 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 45/152 (29%), Positives = 70/152 (46%)
Query: 223 EDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLP 282
+D+ M + +T RL+VP + G L+GK G I+ +R TGA ++V D LP
Sbjct: 23 KDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA-GDMLP 81
Query: 283 PCAMNTDEMVQISGKPNVAKRALYEVSTL----LHQNPRKD-----KP-PSSFPQAY-GG 331
+T+ + I+G P + ++ + L Q+P K +P PSS P + GG
Sbjct: 82 N---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGG 138
Query: 332 QNFHSPPAPMADMHPLGNSSWPARNSSLHGMP 363
Q+ +S + A P S N L G P
Sbjct: 139 QDRYSTGSDSASF-PHTTPSM-CLNPDLEGPP 168
Score = 117 (46.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 113 NSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSE 171
+SS S S+P T+ R++ P+ + G +IGK G +K +RE T A++ VA D +P S
Sbjct: 26 SSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST 84
Query: 172 ERVIIIYSSPTKI 184
ER I I P I
Sbjct: 85 ERAITIAGIPQSI 97
Score = 102 (41.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I++ A+ P +TD V
Sbjct: 225 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI--AN---PVEGSTDRQVT 279
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 280 ITGSAASISLAQYLINVRL 298
Score = 95 (38.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 230 TTSHELTIPNDLIGCIIGRQGAKINEIRQMS-------GAQIKIANPVEGSTDRQVTITG 282
Query: 539 SS 540
S+
Sbjct: 283 SA 284
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 105 (42.0 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 23/84 (27%), Positives = 47/84 (55%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
+ S+ +L+P + VG ++GK GD I++L+ TG + ++ D +P +D+ ++IS
Sbjct: 165 DGSSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPT---GSDKPLRIS 221
Query: 296 GKPNVAKRALYEVSTLLHQNPRKD 319
G P ++A V ++ + + D
Sbjct: 222 GDPYKVQQARELVVEIIREKDQGD 245
Score = 102 (41.0 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 30/120 (25%), Positives = 59/120 (49%)
Query: 202 SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARL--LVPNNMVGCLLGKRG 259
S +P+ Q L V II E G S + S + + + VP VG ++G+ G
Sbjct: 221 SGDPYKVQQARELVVE--IIREKDQGDFRSGRSDFGSRLGSSIDVAVPRFAVGIVIGRNG 278
Query: 260 DVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
++I++++++ G I+ P D + P D + Q+ G+P + A++ ++ L+ +D
Sbjct: 279 EMIKKIQNDAGVRIQFKPDDGISP-----DRVAQVMGQPERCQHAVHLINELVQTAQERD 333
Score = 96 (38.9 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 126 ADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA--DTIPGSEERVIIIYSSPTK 183
+ V IL P+ K+G VIGK G+ +K L+E T K+ + D +P ++ + I P K
Sbjct: 167 SSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSDKPLRISGDPYK 226
Query: 184 IAKTQ 188
+ + +
Sbjct: 227 VQQAR 231
Score = 70 (29.7 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 37/159 (23%), Positives = 59/159 (37%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSECI--VDIRGSSEH 542
+P+ K G ++G+GG I + +++ GA V+LQ +P P + + IRGS +
Sbjct: 366 IPADKCGLVIGKGGETIKNINQQS-------GAHVELQRNPPPNTDPNVRTFSIRGSPQQ 418
Query: 543 LISAHGTYQ-----SFMTSGQSMKVQPSSYQNINPXXXXXXXXXXXX--XXYQNMN--TQ 593
+ A S M S + P + P YQ +Q
Sbjct: 419 MEMARQLIDDKIGASGMGGNSSFGLSPFTQGPATPHQNGPQTFMTGGWGTTYQTWQPQSQ 478
Query: 594 QSPYHRVNAQQSPYQNINPQQSSYPM---HTHQGAGTNP 629
Q P H N QS + + Y +QG + P
Sbjct: 479 QDPSH--NGSQSGQMDYSKAWEQYYKKLGQQNQGQSSGP 515
Score = 70 (29.7 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ---ISGKPNVAK 302
+P + G ++GK G+ I+ + ++GA++ + R PP NTD V+ I G P +
Sbjct: 366 IPADKCGLVIGKGGETIKNINQQSGAHVEL---QRNPP--PNTDPNVRTFSIRGSPQQME 420
Query: 303 RA 304
A
Sbjct: 421 MA 422
Score = 65 (27.9 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G +R + +P I + +
Sbjct: 91 PDKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTLTGTPESIEQAK 144
Score = 44 (20.5 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEG 452
+K + Q++GA + ++ P + + +R + G
Sbjct: 382 IKNINQQSGAHVELQRNPPPNTDPNVRTFSIRG 414
Score = 41 (19.5 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 364 STPWMGGYGDQPSRMGSGSINSCPP 388
S W Y Q G GS S PP
Sbjct: 518 SKAWEEYYKKQTQAAGPGSQQSSPP 542
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 119 (46.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 43/167 (25%), Positives = 75/167 (44%)
Query: 114 SSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGS 170
SS ++S + + ++L PS G +IGK G + L++ET A I ++ D PG+
Sbjct: 44 SSTKRS-NTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGT 102
Query: 171 EERVIIIYSSPTKIAKTQNKDDDSAAETKKESM--EPHCAAQDALLKVHDRIIEEDLFGG 228
ERV +I + + N + E + S EP Q DRI +
Sbjct: 103 TERVCLIQGTVEALNGVHNFIAEKVREMPQSSQKTEPVSILQPQTTVNPDRIKQ------ 156
Query: 229 MASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
A+L+VPN+ G ++GK G ++ + ++GA +++
Sbjct: 157 -------------AKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 190
Score = 104 (41.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 80/356 (22%), Positives = 134/356 (37%)
Query: 242 ARLLVPNNMVGCLLGKRGDVIQRLRSETGA-----------NI--RVLPADRLPPCAMNT 288
A+L+VPN+ G ++GK G ++ + ++GA N+ RV+ P
Sbjct: 157 AKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQNRKA 216
Query: 289 DEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG 348
E++ + + + +S P + P+ P A + + A LG
Sbjct: 217 VEIIVQKIQEDPQSSSCLNISYSNITGPVANSNPTGSPFANSTEVLPNAAAAATASTLLG 276
Query: 349 NSS------WPARNSSLHG---MPSTP---WMGGYGDQPSRMGSGSINSCPPGQMGEVSA 396
+ +PA SSL G + T + YG + +G G +N P G ++A
Sbjct: 277 QAGLAGMGGFPAAMSSLSGNDLLAITSALNTLASYGYNTNTLGLG-LN--PAAASGVLAA 333
Query: 397 EFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPT----DSDERVIRASAFEG 452
+A + +G H AP+ A G
Sbjct: 334 -------VAASANPAAAAAANLLATYASEASGGGGHPA-APSLGGFSLGSLAAATGASNG 385
Query: 453 LWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQAD 512
NP S + + L T + +E G + VP + VG ILG+GG + E + T A
Sbjct: 386 YLNPSSPLVASSLL---GTEKLAEGGKEVVEIAVPENLVGAILGKGGKTLVEYQELTGAR 442
Query: 513 IRVVGARVKLQDPHPGSSECIVDIRGS------SEHLISAHGTYQSFMTSGQSMKV 562
I++ K + PG+ V I GS +++LIS TY+ + + KV
Sbjct: 443 IQIS----KKGEFIPGTRNRKVTITGSPAATQAAQYLISQRITYEQGVRATNPQKV 494
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 105 (42.0 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAK 186
YR+L +++ G +IG G ++ S+R ET K ++ IPGS ER++ + AK
Sbjct: 72 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGKLDDCAK 128
Score = 101 (40.6 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 182 TKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTIT 241
+K TQ + S +T ++ + Q + + I+++ D N ++ I
Sbjct: 16 SKPEPTQQQQQQSTQQTSQQQQQQ----QPSSSTLTTSIVDQSSTLPSLQDKSNIDALIN 71
Query: 242 ARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVA 301
R+LV GCL+G G VI +R+ET + RL P + + ++ +SGK +
Sbjct: 72 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGI---SRLIPGSH--ERILTVSGKLDDC 126
Query: 302 KRAL-YEVSTLLHQN 315
+AL Y L++ N
Sbjct: 127 AKALSYFAQALINAN 141
Score = 84 (34.6 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 21/68 (30%), Positives = 41/68 (60%)
Query: 229 MASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288
++S + E +TI RLL+PN+ +G L+G +G IQ+L++ NI ++ + P +
Sbjct: 153 LSSTPNTEETTIL-RLLIPNSQMGTLIGSKGARIQQLQNNF--NISMIASKSFLPGS--N 207
Query: 289 DEMVQISG 296
+ +V++ G
Sbjct: 208 ERLVELQG 215
Score = 80 (33.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 21/69 (30%), Positives = 44/69 (63%)
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+E+ TI RLL+P+S++G ++G G I +++ +I ++ ++ L PGS+E +V
Sbjct: 159 TEETTIL-RLLIPNSQMGTLIGSKGARIQQLQNNF--NISMIASKSFL----PGSNERLV 211
Query: 535 DIRGSSEHL 543
+++G+ + L
Sbjct: 212 ELQGTVDDL 220
Score = 69 (29.3 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 469 NKTSEFSEKGTITTRLL-VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHP 527
N + G TT + P+ VG ++G+ G I+ +R+ V GA + + +
Sbjct: 275 NNNNTHGSGGNKTTDTISFPNDIVGALIGKRGSRIDGVRK-------VSGAMIAISEAIE 327
Query: 528 GSSECIVDIRGSSEHLISAHGT-YQSFMTSGQSMKVQPS 565
G +E + I GSS + A YQ+F + K + S
Sbjct: 328 GENERVFTITGSSHAVDKAKQMIYQNFKREEERRKNEES 366
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 103 (41.3 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 311 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLEG 365
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 366 SEDRIITITGTQDQIQNAQYLLQNSVKQ 393
Score = 98 (39.6 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 324 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 376
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 377 QDQIQNAQYLLQN 389
Score = 97 (39.2 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 4 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 61
Query: 175 IIIYSSPTKIAKTQNK 190
+ I + I + K
Sbjct: 62 LSISADIETIGEILKK 77
Score = 67 (28.6 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 346 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 397
Score = 65 (27.9 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 29/117 (24%), Positives = 43/117 (36%)
Query: 284 CAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFH 335
C +TD +V I GKP+ + + L+ ++P K + P P+ + + Y GG F
Sbjct: 121 CPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFD 180
Query: 336 SPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G + G P P Y D R G PPG+ G
Sbjct: 181 DRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 234
Score = 61 (26.5 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N + + R+L+ + G ++GK G I+ LR++ A++ V
Sbjct: 12 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 52
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 101 (40.6 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 124 QPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
Q D R+L P++ +G +IGK G ++++ ++TQ+KI V G+ E+ I ++S+P
Sbjct: 192 QQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTP 250
Score = 97 (39.2 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F- 474
++KQL + ASI + AP ++ + +R G P +Q A ++ K E F
Sbjct: 427 HIKQLSRFASASIKI--APPETPDSKVRMVIITG--PPEAQ-FKAQGRIYGKLKEENFFG 481
Query: 475 -SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
E+ + T + VP+S G ++G+GG +NE++ T A++ V
Sbjct: 482 PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
Score = 85 (35.0 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 29/115 (25%), Positives = 55/115 (47%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
+++ ++ EE+ FG E + + VP + G ++GK G + L++ T A +
Sbjct: 469 RIYGKLKEENFFG------PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV- 521
Query: 275 VLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQA 328
V+P D+ P N +V+I G ++ A ++ +L Q + K S+ QA
Sbjct: 522 VVPRDQTPD--ENDQVIVKIIGHFYASQMAQRKIRDILAQVKQQHQKGQSNQAQA 574
Score = 81 (33.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I RLLVP VG ++GK G I+ + +T + I V + A ++ + + P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISVHSTPE 251
Query: 300 VAKRALYEVSTLLHQNPRKDKPPSSFP 326
A + ++H+ + K P
Sbjct: 252 GCSSACKMILEIMHKEAKDTKTADEVP 278
Score = 73 (30.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 122 NSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIII 177
+++ AD V +IL + +G +IGK G +K + ++T+ KIT++ D + ER I +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITV 329
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
++ +P VG ++GK+G I++L A+I++ P + P + MV I+G P
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET-PDSKVR---MVIITGPPEAQF 464
Query: 303 RA 304
+A
Sbjct: 465 KA 466
Score = 68 (29.0 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 30/138 (21%), Positives = 53/138 (38%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D + ++L NN VG L+GK G ++++ +T I + L N + +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLT--LYNPERTI 327
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQ-AYGGQNFHSPPAPMADMHPLGNSS 351
+ G RA E+ + + D S G N + + P +S+
Sbjct: 328 TVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAA-----VGLFPASSSA 382
Query: 352 WPARNSSLHGM-PSTPWM 368
P SS+ G P + +M
Sbjct: 383 VPPPPSSVTGAAPYSSFM 400
Score = 61 (26.5 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
++ +P+ VG I+G+ G I ++ R A I++ P S +V I G E
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVIITGPPEA 462
Query: 543 LISAHG 548
A G
Sbjct: 463 QFKAQG 468
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 101 (40.6 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 124 QPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
Q D R+L P++ +G +IGK G ++++ ++TQ+KI V G+ E+ I ++S+P
Sbjct: 192 QQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTP 250
Score = 97 (39.2 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F- 474
++KQL + ASI + AP ++ + +R G P +Q A ++ K E F
Sbjct: 427 HIKQLSRFASASIKI--APPETPDSKVRMVIITG--PPEAQ-FKAQGRIYGKLKEENFFG 481
Query: 475 -SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
E+ + T + VP+S G ++G+GG +NE++ T A++ V
Sbjct: 482 PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/100 (25%), Positives = 49/100 (49%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
+++ ++ EE+ FG E + + VP + G ++GK G + L++ T A +
Sbjct: 469 RIYGKLKEENFFG------PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV- 521
Query: 275 VLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314
V+P D+ P N +V+I G ++ A ++ +L Q
Sbjct: 522 VVPRDQTPD--ENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
Score = 81 (33.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I RLLVP VG ++GK G I+ + +T + I V + A ++ + + P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISVHSTPE 251
Query: 300 VAKRALYEVSTLLHQNPRKDKPPSSFP 326
A + ++H+ + K P
Sbjct: 252 GCSSACKMILEIMHKEAKDTKTADEVP 278
Score = 73 (30.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 122 NSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIII 177
+++ AD V +IL + +G +IGK G +K + ++T+ KIT++ D + ER I +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITV 329
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
++ +P VG ++GK+G I++L A+I++ P + P + MV I+G P
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET-PDSKVR---MVIITGPPEAQF 464
Query: 303 RA 304
+A
Sbjct: 465 KA 466
Score = 68 (29.0 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 30/138 (21%), Positives = 53/138 (38%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D + ++L NN VG L+GK G ++++ +T I + L N + +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLT--LYNPERTI 327
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQ-AYGGQNFHSPPAPMADMHPLGNSS 351
+ G RA E+ + + D S G N + + P +S+
Sbjct: 328 TVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAA-----VGLFPASSSA 382
Query: 352 WPARNSSLHGM-PSTPWM 368
P SS+ G P + +M
Sbjct: 383 VPPPPSSVTGAAPYSSFM 400
Score = 61 (26.5 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
++ +P+ VG I+G+ G I ++ R A I++ P S +V I G E
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVIITGPPEA 462
Query: 543 LISAHG 548
A G
Sbjct: 463 QFKAQG 468
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 101 (40.6 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 124 QPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
Q D R+L P++ +G +IGK G ++++ ++TQ+KI V G+ E+ I ++S+P
Sbjct: 192 QQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTP 250
Score = 97 (39.2 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F- 474
++KQL + ASI + AP ++ + +R G P +Q A ++ K E F
Sbjct: 427 HIKQLSRFASASIKI--APPETPDSKVRMVIITG--PPEAQ-FKAQGRIYGKLKEENFFG 481
Query: 475 -SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
E+ + T + VP+S G ++G+GG +NE++ T A++ V
Sbjct: 482 PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/100 (25%), Positives = 49/100 (49%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
+++ ++ EE+ FG E + + VP + G ++GK G + L++ T A +
Sbjct: 469 RIYGKLKEENFFG------PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV- 521
Query: 275 VLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314
V+P D+ P N +V+I G ++ A ++ +L Q
Sbjct: 522 VVPRDQTPD--ENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
Score = 81 (33.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I RLLVP VG ++GK G I+ + +T + I V + A ++ + + P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISVHSTPE 251
Query: 300 VAKRALYEVSTLLHQNPRKDKPPSSFP 326
A + ++H+ + K P
Sbjct: 252 GCSSACKMILEIMHKEAKDTKTADEVP 278
Score = 73 (30.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 122 NSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIII 177
+++ AD V +IL + +G +IGK G +K + ++T+ KIT++ D + ER I +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITV 329
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
++ +P VG ++GK+G I++L A+I++ P + P + MV I+G P
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET-PDSKVR---MVIITGPPEAQF 464
Query: 303 RA 304
+A
Sbjct: 465 KA 466
Score = 68 (29.0 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 30/138 (21%), Positives = 53/138 (38%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D + ++L NN VG L+GK G ++++ +T I + L N + +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLT--LYNPERTI 327
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQ-AYGGQNFHSPPAPMADMHPLGNSS 351
+ G RA E+ + + D S G N + + P +S+
Sbjct: 328 TVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAA-----VGLFPASSSA 382
Query: 352 WPARNSSLHGM-PSTPWM 368
P SS+ G P + +M
Sbjct: 383 VPPPPSSVTGAAPYSSFM 400
Score = 61 (26.5 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
++ +P+ VG I+G+ G I ++ R A I++ P S +V I G E
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVIITGPPEA 462
Query: 543 LISAHG 548
A G
Sbjct: 463 QFKAQG 468
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 101 (40.6 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 124 QPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
Q D R+L P++ +G +IGK G ++++ ++TQ+KI V G+ E+ I ++S+P
Sbjct: 192 QQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTP 250
Score = 97 (39.2 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F- 474
++KQL + ASI + AP ++ + +R G P +Q A ++ K E F
Sbjct: 427 HIKQLSRFASASIKI--APPETPDSKVRMVIITG--PPEAQ-FKAQGRIYGKLKEENFFG 481
Query: 475 -SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
E+ + T + VP+S G ++G+GG +NE++ T A++ V
Sbjct: 482 PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/100 (25%), Positives = 49/100 (49%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
+++ ++ EE+ FG E + + VP + G ++GK G + L++ T A +
Sbjct: 469 RIYGKLKEENFFG------PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV- 521
Query: 275 VLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314
V+P D+ P N +V+I G ++ A ++ +L Q
Sbjct: 522 VVPRDQTPD--ENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
Score = 81 (33.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I RLLVP VG ++GK G I+ + +T + I V + A ++ + + P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISVHSTPE 251
Query: 300 VAKRALYEVSTLLHQNPRKDKPPSSFP 326
A + ++H+ + K P
Sbjct: 252 GCSSACKMILEIMHKEAKDTKTADEVP 278
Score = 73 (30.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 122 NSQPADTV-YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIII 177
+++ AD V +IL + +G +IGK G +K + ++T+ KIT++ D + ER I +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITV 329
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
++ +P VG ++GK+G I++L A+I++ P + P + MV I+G P
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET-PDSKVR---MVIITGPPEAQF 464
Query: 303 RA 304
+A
Sbjct: 465 KA 466
Score = 68 (29.0 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 30/138 (21%), Positives = 53/138 (38%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D + ++L NN VG L+GK G ++++ +T I + L N + +
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLT--LYNPERTI 327
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQ-AYGGQNFHSPPAPMADMHPLGNSS 351
+ G RA E+ + + D S G N + + P +S+
Sbjct: 328 TVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAA-----VGLFPASSSA 382
Query: 352 WPARNSSLHGM-PSTPWM 368
P SS+ G P + +M
Sbjct: 383 VPPPPSSVTGAAPYSSFM 400
Score = 61 (26.5 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
++ +P+ VG I+G+ G I ++ R A I++ P S +V I G E
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVIITGPPEA 462
Query: 543 LISAHG 548
A G
Sbjct: 463 QFKAQG 468
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 97 (39.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
++ ++ EE+ FG E + A + VP+ G ++GK G + L++ T A +
Sbjct: 472 RIFGKLKEENFFG------PKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEV- 524
Query: 275 VLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKP-PSS 324
V+P D+ P N +V+I+G ++ A ++ ++ Q R+ +P PS+
Sbjct: 525 VVPRDQTPD--ENDQVVVKITGHFYASQLAQRKIQEIISQVRRQQQPKPSA 573
Score = 96 (38.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 118 QSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQA--KITVADTIPGSEERVI 175
QSFG ++TV+ + P+ +G +IGK G +K L A KI AD I +++R++
Sbjct: 400 QSFGAQMESETVH-LFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGID-AKQRMV 457
Query: 176 IIYSSPTKIAKTQNK 190
II P K Q +
Sbjct: 458 IISGPPEAQFKAQGR 472
Score = 93 (37.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 341 MADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPG-QMGEVSAEFS 399
+A MH L ++ P N + G+ P G PS + SG PPG Q G S
Sbjct: 354 VAAMH-LQSNLIPGLNLNALGL--FPGAASGGISPSVV-SGP----PPGAQAGYQSFGAQ 405
Query: 400 MK-----ILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAP-TDSDER-VIRASAFEG 452
M+ + A ++KQL + GASI + A D+ +R VI + E
Sbjct: 406 MESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDAKQRMVIISGPPEA 465
Query: 453 LWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQAD 512
+ + + I L+ +N E+ + + VPS G ++G+GG +NE++ T A+
Sbjct: 466 QFKAQGR-IFGKLKEENFFGP-KEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAE 523
Query: 513 IRV 515
+ V
Sbjct: 524 VVV 526
Score = 93 (37.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +P VG ++GK+G I++L GA+I++ PAD + MV ISG P
Sbjct: 410 TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDA----KQRMVIISGPPEA 465
Query: 301 AKRA 304
+A
Sbjct: 466 QFKA 469
Score = 91 (37.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 126 ADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
+D R+L P++ +G +IGK G ++++ ++T +KI + G+ E+ I ++S+P
Sbjct: 193 SDVPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAGAAEKPITVHSTP 249
Score = 82 (33.9 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 20/87 (22%), Positives = 38/87 (43%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D I ++L NN VG L+GK G ++++ +T I + P L N + +
Sbjct: 269 DTKITEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLT--LYNPERTI 326
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKD 319
+ G + +A E+ + ++ D
Sbjct: 327 TVKGTLDACAKAEEEIMKKVRESYEND 353
Score = 74 (31.1 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 238 STITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
S + RLLVP VG ++GK G I+ + +T + I +
Sbjct: 193 SDVPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDI 230
Score = 73 (30.8 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ D + ER I + + AK
Sbjct: 279 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGTLDACAKA 338
Query: 188 QNKDDDSAAETKKESMEPHCAA 209
+ + + +ES E AA
Sbjct: 339 E----EEIMKKVRESYENDVAA 356
Score = 63 (27.2 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGA 518
T L +P+ VG I+G+ G I ++ R A I++ A
Sbjct: 410 TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPA 447
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 98 (39.6 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 34/151 (22%), Positives = 67/151 (44%)
Query: 183 KIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA 242
KIA ++ D+ E AQ +++ ++ EE+ F E + A
Sbjct: 307 KIAAPESPDEPERMVIITGPPEAQFKAQG---RIYGKLKEENFFTA------KEEVKLEA 357
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
+ VP+ G ++GK G + L++ T A + ++P D+ P N D V+I G ++
Sbjct: 358 HIKVPSTAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENDDVFVKIIGHFFASQ 414
Query: 303 RALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
A ++ ++ Q ++++ PQ Q+
Sbjct: 415 TAQRKIREIVQQVKQQERKHQQMPQTPSEQS 445
Score = 95 (38.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 34/155 (21%), Positives = 71/155 (45%)
Query: 419 NVKQLQQETGASIHVE--DAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSE 476
++K+L GASI + ++P + + VI E + + + + + T++ E
Sbjct: 294 HIKELAHFAGASIKIAAPESPDEPERMVIITGPPEAQFKAQGRIYGKLKEENFFTAK--E 351
Query: 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI-VD 535
+ + + VPS+ G ++G+GG +NE++ T A++ V +D P ++ + V
Sbjct: 352 EVKLEAHIKVPSTAAGRVIGKGGKTVNELQNLTSAEVIVP------RDQTPDENDDVFVK 405
Query: 536 IRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNI 570
I G H ++ + Q +K Q +Q +
Sbjct: 406 IIG---HFFASQTAQRKIREIVQQVKQQERKHQQM 437
Score = 94 (38.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSS 180
RIL P++ +G +IGK G +K++ ++TQ+K+ + G+ E+ I I+SS
Sbjct: 63 RILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGATEKAITIHSS 113
Score = 77 (32.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
L +P VG L+GK+G I+ L GA+I++ P + MV I+G P +
Sbjct: 277 LFIPTPAVGALIGKKGQHIKELAHFAGASIKIAA----PESPDEPERMVIITGPPEAQFK 332
Query: 304 A 304
A
Sbjct: 333 A 333
Score = 72 (30.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
+ ++L N++VG L+GK G ++++ +TG I + L N + + + G
Sbjct: 141 VPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDLT--VYNQERTISVRGGVE 198
Query: 300 VAKRALYEVSTLLHQNPRKD 319
+A E+ L + D
Sbjct: 199 ECCKAEGEIMKKLREAHEND 218
Score = 71 (30.1 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ D ++ER I + + K
Sbjct: 144 KILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDLTVYNQERTISVRGGVEECCKA 203
Query: 188 QNK 190
+ +
Sbjct: 204 EGE 206
Score = 68 (29.0 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPH-PGSSECIVDIRGSSEH 542
L +P+ VG ++G+ G I E+ GA +K+ P P E +V I G E
Sbjct: 277 LFIPTPAVGALIGKKGQHIKELAH-------FAGASIKIAAPESPDEPERMVIITGPPEA 329
Query: 543 LISAHGT-Y-----QSFMTSGQSMKVQ 563
A G Y ++F T+ + +K++
Sbjct: 330 QFKAQGRIYGKLKEENFFTAKEEVKLE 356
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 99 (39.9 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
F ++ +T + +P+ VGCI+G+GG I+E+RR + + I + ++PH + E +
Sbjct: 315 FLQQPKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIA------KEPHDETGERM 368
Query: 534 VDIRGSSE 541
I G+ E
Sbjct: 369 FTITGTHE 376
Score = 86 (35.3 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSP 181
R L +R+ G +IGKAG V LR T K V +P +RV+ I S P
Sbjct: 97 RALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTI-SGP 146
Score = 83 (34.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
+T + +P +MVGC++G+ G I +R +G+ I + P + M I+G
Sbjct: 321 VTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKE----PHDETGERMFTITGTHE 376
Query: 300 VAKRALYEVSTLLHQNPRKDK 320
++AL+ LL+Q +K
Sbjct: 377 ENEKALF----LLYQQLEMEK 393
Score = 73 (30.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 21/93 (22%), Positives = 48/93 (51%)
Query: 224 DLFGGMASDDD----NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAD 279
D+F +++ D + N+ RLL+ ++++G ++G+ G I+ ++ + + + D
Sbjct: 159 DIFAKNSTNPDGTPSDANTPRKLRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRM-IASKD 217
Query: 280 RLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
LP +T+ V+I G + A++E+ L
Sbjct: 218 MLP---QSTERTVEIHGTVDNLHAAIWEIGKCL 247
Score = 66 (28.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 26/94 (27%), Positives = 39/94 (41%)
Query: 233 DDNENST--ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
DD +T +T R L+ G ++GK G + LRS T V A +P D
Sbjct: 85 DDATYATQQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKA--VPNVH---DR 139
Query: 291 MVQISGK-PNVAKRALYEVSTLLHQNPRKDKPPS 323
++ ISG NV + + + + D PS
Sbjct: 140 VLTISGPLENVVRAYRFIIDIFAKNSTNPDGTPS 173
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 106 (42.4 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D NSTI LL+P + VG ++GK G+ I++L+ TG + ++ LP A
Sbjct: 153 GFHNDIDG-NSTIQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA-- 208
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD--KPPSSFPQAYGG 331
D+ ++I+G P ++A V ++ + + D S F GG
Sbjct: 209 -DKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRSDFTSRAGG 253
Score = 97 (39.2 bits), Expect = 2.8e-09, Sum P(4) = 2.8e-09
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ SD + + + VP +VG ++G+ G++I+++++
Sbjct: 222 QQAREMVLEIIREKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQN 281
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
TG I+ P D + P + Q+ G P+ + A ++ L+
Sbjct: 282 GTGVRIQFKPDDGISP-----ERAAQVMGPPDRCQHAARIINELI 321
Score = 94 (38.1 bits), Expect = 2.8e-09, Sum P(4) = 2.8e-09
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIY 178
GNS T+ +L P+ K+G VIGK G +K L+E T K + + D +P ++ + I
Sbjct: 160 GNS----TIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRIT 215
Query: 179 SSPTKIAKTQ 188
P K+ + +
Sbjct: 216 GDPFKVQQAR 225
Score = 92 (37.4 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-ADRLP--PCAMN-TDE 290
++ + IT VP+ MVG ++G+ G+ I R+++E+G I++ + +P PC + T E
Sbjct: 73 HQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPE 132
Query: 291 MVQ 293
++
Sbjct: 133 SIE 135
Score = 90 (36.7 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 36/127 (28%), Positives = 59/127 (46%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
VP + G ++GK G+ I+ + ++GA++ + R PP NTD ++I + A
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVEL---QRNPP--PNTDPNLRIF----TIRGAP 411
Query: 306 YEVSTLLHQNPRKDKPPS-SFPQAYGGQNFHSPPA-PMADMHPLGNSSWPARNSSLHGMP 363
++ H K S P A+G F PPA P + P ++P + ++G P
Sbjct: 412 QQIEVARHLIDEKVGGASLGAPTAFGQSPFSQPPAAPHQNTFP--PRAFPNIAAKVNGNP 469
Query: 364 -STPWMG 369
STP G
Sbjct: 470 HSTPVSG 476
Score = 83 (34.3 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 47/228 (20%), Positives = 94/228 (41%)
Query: 349 NSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCP--PGQMGEVSAEFSMK-ILCS 405
+S P R L G P + +Q R+ ++ C PG ++ +++ +L
Sbjct: 117 SSGIPERPCVLTGTPESI------EQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIP 170
Query: 406 AXXXXXXXXXXXFNVKQLQQETGAS-IHVEDAP--TDSDERV-IRASAFEGLWNPRSQTI 461
A +KQLQ+ TG + ++D P T +D+ + I F+ + R +
Sbjct: 171 ASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFK-VQQAREMVL 229
Query: 462 DAILQ-----LQNKTSEFSEK-GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+ I + + S+F+ + G + + VP VG ++G+ G +I +++ T
Sbjct: 230 EIIREKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNGT------ 283
Query: 516 VGARVKLQDPHPG-SSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKV 562
G R++ + P G S E + G + A + + Q ++
Sbjct: 284 -GVRIQFK-PDDGISPERAAQVMGPPDRCQHAARIINELILTAQEREI 329
Score = 76 (31.8 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Score = 66 (28.3 bits), Expect = 2.8e-09, Sum P(4) = 2.8e-09
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSEH 542
VP+ K G ++G+GG I + +++ GA V+LQ +P P + I IRG+ +
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQS-------GAHVELQRNPPPNTDPNLRIFTIRGAPQQ 413
Query: 543 L-ISAH 547
+ ++ H
Sbjct: 414 IEVARH 419
Score = 47 (21.6 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEG 452
N+K + Q++GA + ++ P + + +R G
Sbjct: 376 NIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRG 409
Score = 43 (20.2 bits), Expect = 2.8e-09, Sum P(4) = 2.8e-09
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 594 QSPYHRVNAQQSPYQNINPQQS 615
Q P +V +QQS QN P S
Sbjct: 493 QQPTQQVPSQQSQPQNSQPDYS 514
Score = 41 (19.5 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 536 IRGSSEHLISAHG-TYQSFMTSGQSMKVQPSSYQNINP 572
+ G L G TYQ++ Q + Q S QN P
Sbjct: 474 VSGPPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQNSQP 511
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 107 (42.7 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 35/123 (28%), Positives = 57/123 (46%)
Query: 220 IIEEDLFGGMASDDDNE-NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA 278
+I + L + ++D NE RL+VPN+ G ++GK G I+ E+ A I++ P
Sbjct: 100 LILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPL 159
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGG---QNFH 335
D +D +V +SG RA+ + L ++ + S P +Y G FH
Sbjct: 160 DNT--FYGLSDRLVTLSGTFEEQMRAIDLILAKLTEDDHYSQNVHS-PYSYAGLFYSGFH 216
Query: 336 SPP 338
PP
Sbjct: 217 GPP 219
Score = 87 (35.7 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG + E ST T + V + +G +LG+ G I + TGA I++ +DR +
Sbjct: 243 GGKYQNHKEEAST-TVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKI--SDRGDFMSG 299
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
TD V I+G P +RA+ + T++ Q
Sbjct: 300 TTDRKVSITG-P---QRAIQQAETMIKQ 323
Score = 84 (34.6 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 121 GNS-QPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVII 176
GN +P + R++ P+ GG+IGK G +KS EE++A I ++ +T G +R++
Sbjct: 114 GNEVEPRRRI-RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVT 172
Query: 177 I 177
+
Sbjct: 173 L 173
Score = 76 (31.8 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 112 SNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIP 168
S + S +S T R L + G VIGK G+ + + ++ A+I ++ + P
Sbjct: 19 SPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFP 78
Query: 169 GSEERVIIIYSS 180
G+ +R+I+I S
Sbjct: 79 GTTDRIIMISGS 90
Score = 65 (27.9 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQD 524
K E+ + T + V +G +LG+GG I E+ + T GAR+K+ D
Sbjct: 245 KYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMT-------GARIKISD 292
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 419 NVKQLQQETGASIHVED 435
N+ ++ Q TGA I + D
Sbjct: 276 NIMEITQMTGARIKISD 292
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 33/92 (35%), Positives = 48/92 (52%)
Query: 94 PNNQFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSL 153
P N FK ++ K +SS S S+P TV+ ++ P+ + G +IGK G +K +
Sbjct: 54 PTN-FKSFAMIIDKLEEDISSSMTNSTAASRPRVTVWLVV-PASQCGSLIGKGGCKIKEI 111
Query: 154 REETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
RE T ++ VA D +P S ER I I P I
Sbjct: 112 RESTGVQVQVAGDMLPNSTERAITIAGIPQSI 143
Score = 112 (44.5 bits), Expect = 0.00083, P = 0.00083
Identities = 37/131 (28%), Positives = 67/131 (51%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRS--QTIDAI---LQLQNKTSE 473
+VK++++E+GA I + + + ER+I + G N +S ID + + S
Sbjct: 25 SVKKMRKESGARISISEG--NCPERIITLA---GPTNFKSFAMIIDKLEEDISSSMTNST 79
Query: 474 FSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ + +T L+VP+S+ G ++G+GG I E+R T ++V G D P S+E
Sbjct: 80 AASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAG------DMLPNSTERA 133
Query: 534 VDIRGSSEHLI 544
+ I G + +I
Sbjct: 134 ITIAGIPQSII 144
Score = 111 (44.1 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 39/142 (27%), Positives = 64/142 (45%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
+EED+ M + +T L+VP + G L+GK G I+ +R TG ++V D
Sbjct: 67 LEEDISSSMTNSTAASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVA-GDM 125
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTL----LHQNPR--------KDKPPSSFP-- 326
LP +T+ + I+G P + ++ + L Q+P+ K P F
Sbjct: 126 LPN---STERAITIAGIPQSIIECVKQICVVMLKTLSQSPKGVTIPYLPKPSSPVIFTGG 182
Query: 327 QAYGGQNFHSPPAP-MADMHPL 347
QAY Q ++ P P + +H L
Sbjct: 183 QAYTIQGRYAVPQPDLTKLHRL 204
Score = 87 (35.7 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +IGK G VK +R+E+ A+I++++ ER+I + + PT K+
Sbjct: 7 RLLMHGKEVGSIIGKDGESVKKMRKESGARISISEG--NCPERIITL-AGPTNF-KSFAM 62
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 63 IIDKLEEDISSSMTNSTAA 81
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 103 (41.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 41/158 (25%), Positives = 67/158 (42%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPP-CAMNTDEMVQISGKPNVAK 302
LL+ ++ G ++G +G ++ LR T ++ R C +TD +V I GKP+
Sbjct: 96 LLIQQSLAGGIIGVKGAKVKELRENTQTTVK-----RFQEWCPHSTDRVVLIGGKPDRVV 150
Query: 303 RALYEVSTLLHQNPRKDK--P--PSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARN-S 357
+ + L+ ++P K + P P+ + + Y F M D +P R
Sbjct: 151 ECIKIIPDLVSESPIKGRAQPYDPNFYDETYDCGGF----TMMFDDRQGRPEGFPMRGRG 206
Query: 358 SLHGMPSTPWMGGYGDQPSRMGSGSINSC---PPGQMG 392
L MP P GG PSR ++ C PP +G
Sbjct: 207 GLDRMP--PGQGGRPMPPSRRDYDDMSPCRGPPPPPLG 242
Score = 89 (36.4 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D + IT ++ +P ++ G ++G+ G I+++ E+GA+I+ D L
Sbjct: 286 GGRGSYSDLDRHIITTQITIPKDLTGSIIGEGGQRIKQICHESGASIKT---DELEG--- 339
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 340 SEDRIIIITGTQDQIQNAQYLLQNSVKQ 367
Score = 84 (34.6 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 140 GGVIGKAGNIVKSLREETQAKIT-VADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAET 198
GG+IG G VK LRE TQ + + P S +RV++I P ++ + D +E+
Sbjct: 104 GGIIGVKGAKVKELRENTQTTVKRFQEWCPHSTDRVVLIGGKPDRVVECIKIIPDLVSES 163
Query: 199 K-KESMEPH 206
K +P+
Sbjct: 164 PIKGRAQPY 172
Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 476 EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVD 535
++ ITT++ +P G I+G+GG I ++ + GA +K D GS + I+
Sbjct: 295 DRHIITTQITIPKDLTGSIIGEGGQRIKQICHES-------GASIKT-DELEGSEDRIII 346
Query: 536 IRGSSEHLISAHGTYQS 552
I G+ + + +A Q+
Sbjct: 347 ITGTQDQIQNAQYLLQN 363
Score = 70 (29.7 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADT 166
+Q+F S+ D + RIL S G VIGK NI K+LR + A I+V D+
Sbjct: 4 KQNFKRSRNTDEMVESRILLQSENAGAVIGK--NI-KALRTDYSASISVPDS 52
Score = 49 (22.3 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFS 475
+KQ+ E+GASI ++ S++R+I + + Q +A LQN ++S
Sbjct: 321 IKQICHESGASIKTDELE-GSEDRIIIITGTQ------DQIQNAQYLLQNSVKQYS 369
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 119 (46.9 bits), Expect = 0.00064, P = 0.00064
Identities = 56/231 (24%), Positives = 103/231 (44%)
Query: 322 PSSFPQAYGGQNFHSPPAPMADMHPLG----NSSWPARNSSLHGMPSTPWMGGYGDQPSR 377
PS +P A + S P A LG ++ RN++ +G S+ + GD PS
Sbjct: 3 PSMYPGA--SATYLSYPQQNASQDYLGAYAAQTTTTTRNTA-NGSTSSDHL--LGD-PS- 55
Query: 378 MGSGSINSCPPGQMGE--VSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVED 435
+SC P + S ++++L +K++++E+GA I++ D
Sbjct: 56 ------SSCSPRETSPSTTSLVLTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISD 109
Query: 436 APTDSDERVIRASAFEGLWNPRSQTI-----DAILQLQNKTSEFSEKGTITTRLLVPSSK 490
ER++ + G+ + + +L L N K IT R++VP+++
Sbjct: 110 G--SCPERIVTITGTLGVIGKAFNMVCNKFEEDMLLLPNSVP----KPPITMRVIVPATQ 163
Query: 491 VGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSE 541
G ++G+GG I ++R T A I+V + PH S+E V + G+++
Sbjct: 164 CGSLIGKGGSKIKDIREATGASIQVASEML----PH--STERAVTLSGTAD 208
Score = 105 (42.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 112 SNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS- 170
S S RE S + T+ R+L +++G +IGK G+ +K +REE+ AKI ++D GS
Sbjct: 57 SCSPRETSPSTTSLVLTI-RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISD---GSC 112
Query: 171 EERVIIIYSSPTKIAKTQN 189
ER++ I + I K N
Sbjct: 113 PERIVTITGTLGVIGKAFN 131
Score = 105 (42.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
IT R++VP G L+GK G I+ +R TGA+I+V ++ LP +T+ V +SG +
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVA-SEMLPH---STERAVTLSGTAD 208
Query: 300 VAKRALYEVSTLLHQNPRK 318
+ +V +L + P K
Sbjct: 209 AINLCMTQVCQILLEAPPK 227
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 106 (42.4 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D NSTI LL+P + VG ++GK G+ I++L+ TG + ++ LP A
Sbjct: 153 GFHNDIDG-NSTIQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA-- 208
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD--KPPSSFPQAYGG 331
D+ ++I+G P ++A V ++ + + D S F GG
Sbjct: 209 -DKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRSDFTSRAGG 253
Score = 96 (38.9 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 27/105 (25%), Positives = 54/105 (51%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ SD + + + VP +VG ++G+ G++I+++++
Sbjct: 222 QQAREMVLEIIREKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQN 281
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
+ G I+ P D + P + Q+ G P+ + A ++ L+
Sbjct: 282 DAGVRIQFKPDDGISP-----ERAAQVMGPPDRCQHAARIINELI 321
Score = 94 (38.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIY 178
GNS T+ +L P+ K+G VIGK G +K L+E T K + + D +P ++ + I
Sbjct: 160 GNS----TIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRIT 215
Query: 179 SSPTKIAKTQ 188
P K+ + +
Sbjct: 216 GDPFKVQQAR 225
Score = 92 (37.4 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-ADRLP--PCAMN-TDE 290
++ + IT VP+ MVG ++G+ G+ I R+++E+G I++ + +P PC + T E
Sbjct: 73 HQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPE 132
Query: 291 MVQ 293
++
Sbjct: 133 SIE 135
Score = 90 (36.7 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 36/127 (28%), Positives = 59/127 (46%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
VP + G ++GK G+ I+ + ++GA++ + R PP NTD ++I + A
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVEL---QRNPP--PNTDPNLRIF----TIRGAP 411
Query: 306 YEVSTLLHQNPRKDKPPS-SFPQAYGGQNFHSPPA-PMADMHPLGNSSWPARNSSLHGMP 363
++ H K S P A+G F PPA P + P ++P + ++G P
Sbjct: 412 QQIEVARHLIDEKVGGASLGAPTAFGQSPFSQPPAAPHQNTFP--PRAFPNIAAKVNGNP 469
Query: 364 -STPWMG 369
STP G
Sbjct: 470 HSTPVSG 476
Score = 84 (34.6 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 49/228 (21%), Positives = 94/228 (41%)
Query: 349 NSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCP--PGQMGEVSAEFSMK-ILCS 405
+S P R L G P + +Q R+ ++ C PG ++ +++ +L
Sbjct: 117 SSGIPERPCVLTGTPESI------EQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIP 170
Query: 406 AXXXXXXXXXXXFNVKQLQQETGAS-IHVEDAP--TDSDERV-IRASAFEGLWNPRSQTI 461
A +KQLQ+ TG + ++D P T +D+ + I F+ + R +
Sbjct: 171 ASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFK-VQQAREMVL 229
Query: 462 DAILQ-----LQNKTSEFSEK-GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+ I + + S+F+ + G + + VP VG ++G+ G EM ++ Q D
Sbjct: 230 EIIREKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNG----EMIKKIQND--- 282
Query: 516 VGARVKLQDPHPG-SSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKV 562
G R++ + P G S E + G + A + + Q ++
Sbjct: 283 AGVRIQFK-PDDGISPERAAQVMGPPDRCQHAARIINELILTAQEREI 329
Score = 76 (31.8 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Score = 67 (28.6 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 47/190 (24%), Positives = 76/190 (40%)
Query: 369 GGYGDQPSRMGSGSIN-SCPPGQMGEV---SAEFSMKILCSAXXXXXXXXXXXFNVKQLQ 424
G D SR G GSI S P +G V + E KI A + ++
Sbjct: 242 GVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAA 301
Query: 425 QETGASIHVEDAPTDSDERVIRASAFE---GLWNPRSQTIDAILQLQNKTSEFSEKGTIT 481
Q G + A +E ++ A E GL R + + + S + G
Sbjct: 302 QVMGPPDRCQHAARIINELILTAQEREILGGLTGTRGRG-----RGRGDWSVGTPGGIQE 356
Query: 482 TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRG 538
VP+ K G ++G+GG I + +++ GA V+LQ +P P + I IRG
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQS-------GAHVELQRNPPPNTDPNLRIFTIRG 409
Query: 539 SSEHL-ISAH 547
+ + + ++ H
Sbjct: 410 APQQIEVARH 419
Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 594 QSPYHRVNAQQSPYQNINPQQS 615
Q P +V +QQS QN P S
Sbjct: 493 QQPTQQVPSQQSQPQNSQPDYS 514
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 536 IRGSSEHLISAHG-TYQSFMTSGQSMKVQPSSYQNINP 572
+ G L G TYQ++ Q + Q S QN P
Sbjct: 474 VSGPPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQNSQP 511
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 116 (45.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 52/224 (23%), Positives = 99/224 (44%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG+ S+ N T RLL+ +N +G ++G++G I+ ++ +G + V + LP
Sbjct: 304 GGIVSN----NGTHPIRLLISHNQMGTIIGRQGLKIKHIQDASGVRM-VAQKEMLP---Q 355
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHP 346
+T+ +V++ G P ++A++E+ L + ++ + A S + H
Sbjct: 356 STERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGTGTILYNPAV-----RSSVGSGSIQHN 410
Query: 347 LGNS-SWPAR--NSSLHGMPSTPWMGGYG--DQPSRMGSGSINSCPPGQMGEVSAEFSMK 401
GNS S+ +R N + +G + GGYG P G G+ E+ +
Sbjct: 411 GGNSDSYNSRPYNRTGNGADFSDQSGGYGRRSNPDTSNRGYPLVTEDGE--EIQTQ---N 465
Query: 402 ILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTD-SDERV 444
I A + ++++ +GA I + AP D + ER+
Sbjct: 466 ISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERM 509
Score = 97 (39.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
+D E T + +P +MVGC++G+ G I +R +GA I + A P + M
Sbjct: 456 EDGEEIQ-TQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKA----PHDETGERMF 510
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKDK 320
I G ++ALY LL++N +K
Sbjct: 511 TIMGSAQANEKALY----LLYENLEAEK 534
Score = 95 (38.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIII 177
R + S++ G +IGKAG V LR+ET K V+ +PG +RV+ +
Sbjct: 230 RAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTV 276
Score = 93 (37.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T + +P+ VGCI+G+GG I E+RR + A I + A PH + E + I GS+
Sbjct: 463 TQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKA------PHDETGERMFTIMGSA 516
Query: 541 E 541
+
Sbjct: 517 Q 517
Score = 79 (32.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 36/114 (31%), Positives = 54/114 (47%)
Query: 175 IIIYSSPTKIAKTQNKDDDSAAETK--KESMEPHCAAQDALLKVHDRIIEEDLFGGMASD 232
I+ SS T K +N D ET E+M DA+ V D E DL ++
Sbjct: 170 ILPVSSSTTPLKLENMDTTDIHETPIADETMT------DAV-NVGD---EGDLEVAPKTE 219
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETG--ANI-RVLPA--DRL 281
++ S +T R +V + G ++GK G + LR ETG A + +V+P DR+
Sbjct: 220 EEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRV 273
Score = 70 (29.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSPTKIAK 186
R+L ++G +IG+ G +K +++ + ++ + +P S ER++ + +P I K
Sbjct: 316 RLLISHNQMGTIIGRQGLKIKHIQDASGVRMVAQKEMLPQSTERIVEVQGTPEGIEK 372
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 103 (41.3 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D NSTI +L+P + VG ++GK G+ I++L+ TG + ++ LP A
Sbjct: 153 GFHNDIDG-NSTIQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA-- 208
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
D+ ++I+G P ++A V ++ + + D
Sbjct: 209 -DKPLRITGDPFKVQQAREMVLEIIREKDQAD 239
Score = 96 (38.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIY 178
GNS T+ IL P+ K+G VIGK G +K L+E T K + + D +P ++ + I
Sbjct: 160 GNS----TIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRIT 215
Query: 179 SSPTKIAKTQ 188
P K+ + +
Sbjct: 216 GDPFKVQQAR 225
Score = 93 (37.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 27/112 (24%), Positives = 54/112 (48%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ D + + VP VG ++G+ G++I+++++
Sbjct: 222 QQAREMVLEIIREKDQADFRGVRGDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQN 281
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ G I+ P D + P + Q+ G P+ + A + ++ L+ +D
Sbjct: 282 DAGVRIQFKPDDGISP-----ERAAQVMGPPDRCQHAAHVINELILTAQERD 328
Score = 92 (37.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-ADRLP--PCAMN-TDE 290
++ + IT VP+ MVG ++G+ G+ I R+++E+G I++ + +P PC + T E
Sbjct: 73 HQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPE 132
Query: 291 MVQ 293
++
Sbjct: 133 SIE 135
Score = 85 (35.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 51/223 (22%), Positives = 94/223 (42%)
Query: 349 NSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCP--PGQMGEVSAEFSMK-ILCS 405
+S P R L G P + +Q R+ ++ C PG ++ +++ IL
Sbjct: 117 SSGIPERPCVLTGTPESI------EQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEILIP 170
Query: 406 AXXXXXXXXXXXFNVKQLQQETGAS-IHVEDAP--TDSDERV-IRASAFEGLWNPRSQTI 461
A +KQLQ+ TG + ++D P T +D+ + I F+ + R +
Sbjct: 171 ASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFK-VQQAREMVL 229
Query: 462 DAILQ-----LQNKTSEFSEK-GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+ I + + +FS + G + + VP VG ++G+ G EM ++ Q D
Sbjct: 230 EIIREKDQADFRGVRGDFSARVGGGSIEVSVPRFAVGIVIGRNG----EMIKKIQND--- 282
Query: 516 VGARVKLQDPHPG-SSECIVDIRGSSEHLI-SAHGTYQSFMTS 556
G R++ + P G S E + G + +AH + +T+
Sbjct: 283 AGVRIQFK-PDDGISPERAAQVMGPPDRCQHAAHVINELILTA 324
Score = 79 (32.9 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
VP + G ++GK GD I+ + ++GA++ + R PP NTD ++I + ++
Sbjct: 361 VPADKCGLVIGKGGDNIKSINQQSGAHVEL---QRNPP--PNTDPNLRIFTIRGIPQQI- 414
Query: 306 YEVSTLLHQNPRKDKPPS-SFPQAYGGQNFHSPPA-PMADMHP 346
EV+ H K S P A+G F PPA P + P
Sbjct: 415 -EVAR--HLIDEKVGGTSLGAPGAFGQSPFSQPPAAPHQNTFP 454
Score = 76 (31.8 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Score = 69 (29.3 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 47/190 (24%), Positives = 77/190 (40%)
Query: 369 GGYGDQPSRMGSGSIN-SCPPGQMGEV---SAEFSMKILCSAXXXXXXXXXXXFNVKQLQ 424
G GD +R+G GSI S P +G V + E KI A + ++
Sbjct: 242 GVRGDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAA 301
Query: 425 QETGASIHVEDAPTDSDERVIRAS---AFEGLWNPRSQTIDAILQLQNKTSEFSEKGTIT 481
Q G + A +E ++ A F GL R + + + S + G
Sbjct: 302 QVMGPPDRCQHAAHVINELILTAQERDGFGGLTVARGRG-----RGRGDWSVGAPGGVQE 356
Query: 482 TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRG 538
VP+ K G ++G+GG I + +++ GA V+LQ +P P + I IRG
Sbjct: 357 ITYTVPADKCGLVIGKGGDNIKSINQQS-------GAHVELQRNPPPNTDPNLRIFTIRG 409
Query: 539 SSEHL-ISAH 547
+ + ++ H
Sbjct: 410 IPQQIEVARH 419
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 105 (42.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 31/123 (25%), Positives = 54/123 (43%)
Query: 219 RIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA 278
++ D F + +++ VP+ MVG ++G+ G+ I RL+ E+G I++ P
Sbjct: 69 KVPPSDPFSAVMGGMGGPPRSVSEEFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPD 128
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYG-GQNFHSP 337
P D V ++G P+ A+ LL + K +P +F G G + H
Sbjct: 129 SGGMP-----DRSVTLTGSPD----AIMTAKRLLSEIVEKGRPSPAFHHNDGPGMSVHEM 179
Query: 338 PAP 340
P
Sbjct: 180 MIP 182
Score = 97 (39.2 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 40/151 (26%), Positives = 59/151 (39%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQI---SGKPNVAK 302
VP G ++GK G+ I+ + ++GA I + R PP N+D ++I G P
Sbjct: 381 VPTMKTGLIIGKGGETIKNISQQSGARIEL---QRNPP--PNSDPNIKIFTVRGSPQQID 435
Query: 303 RALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPM---ADMHPLGNSSWPARNSSL 359
A V + P P +GG + H PP P A M P +
Sbjct: 436 YARQLVEEKIGGPVSPMGGPHGPPGPHGGPS-HGPPGPQGPPAPMGPYNPGPYGQGPPGP 494
Query: 360 HGMPSTPWMGGYGD-QPS-RMGSGSINSCPP 388
HG P+ G+G+ P + G C P
Sbjct: 495 HGPPAPYQPQGWGNGYPHWQQGQPDPTVCSP 525
Score = 94 (38.1 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
VP VG ++G+ G++I++++++TG I+ P D P + + QI G P+ A+ A
Sbjct: 274 VPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGSTP-----ERIAQIMGPPDRAQHAA 328
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYGG 331
++ LL ++ + PP GG
Sbjct: 329 DIITDLL-RSVQAGGPPGHGGGGGGG 353
Score = 83 (34.3 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 122 NSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYS 179
N P +V+ ++ P+ K G VIGK G +K L+E K+ + P + ++ + I
Sbjct: 169 NDGPGMSVHEMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRISG 228
Query: 180 SPTKIAKTQN 189
P K+ + ++
Sbjct: 229 DPFKVQQAKD 238
Score = 76 (31.8 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSECI--VDIRGSSEH 542
VP+ K G I+G+GG I + +++ GAR++LQ +P P S I +RGS +
Sbjct: 381 VPTMKTGLIIGKGGETIKNISQQS-------GARIELQRNPPPNSDPNIKIFTVRGSPQQ 433
Query: 543 L 543
+
Sbjct: 434 I 434
Score = 72 (30.4 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 37/153 (24%), Positives = 67/153 (43%)
Query: 420 VKQLQQETGAS-IHVEDAP--TDSDERV-IRASAFEGLWNPRSQTIDAILQ--LQNKTSE 473
+KQLQ+ G + ++D P T +D+ + I F+ + + +D I + + E
Sbjct: 197 IKQLQERAGVKMVMIQDGPQNTGADKPLRISGDPFK-VQQAKDMVMDLIRDQGFREQRGE 255
Query: 474 FSEK------GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHP 527
+ + G + + VP VG ++G+ G EM ++ Q D G R++ + P
Sbjct: 256 YGSRAGGGGGGGESLDVPVPRFAVGIVIGRSG----EMIKKIQND---TGVRIQFK-PDD 307
Query: 528 GSS-ECIVDIRGSSEHLISAHGTYQSFMTSGQS 559
GS+ E I I G + A + S Q+
Sbjct: 308 GSTPERIAQIMGPPDRAQHAADIITDLLRSVQA 340
Score = 61 (26.5 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 25/99 (25%), Positives = 43/99 (43%)
Query: 369 GGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETG 428
GG G + G G+ N PPG + E + F++ + + +K + Q++G
Sbjct: 352 GGGGGRGRGRGQGNWNMGPPGGLQEFT--FTVPTMKTGLIIGKGGET----IKNISQQSG 405
Query: 429 ASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQL 467
A I ++ P + + I+ G +P Q ID QL
Sbjct: 406 ARIELQRNPPPNSDPNIKIFTVRG--SP--QQIDYARQL 440
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 110 (43.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 124 QPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
QP D R+L P++ +G +IGK G ++++ ++TQ+KI V G+ E+ I I+S+P
Sbjct: 192 QPVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTP 250
Score = 98 (39.6 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F- 474
++KQL + ASI + AP ++ + +R G P +Q A ++ K E F
Sbjct: 426 HIKQLSRFASASIKI--APPETPDSKVRMVVITG--PPEAQ-FKAQGRIYGKLKEENFFG 480
Query: 475 -SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
E+ + T + VP+S G ++G+GG +NE++ T A++ V
Sbjct: 481 PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 522
Score = 84 (34.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 33/136 (24%), Positives = 59/136 (43%)
Query: 179 SSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENS 238
S+ KIA + D E AQ +++ ++ EE+ FG E
Sbjct: 435 SASIKIAPPETPDSKVRMVVITGPPEAQFKAQG---RIYGKLKEENFFG------PKEEV 485
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
+ + VP + G ++GK G + L++ T A + V+P D+ P N +V+I G
Sbjct: 486 KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENEQVIVKIIGHF 542
Query: 299 NVAKRALYEVSTLLHQ 314
++ A ++ +L Q
Sbjct: 543 YASQMAQRKIRDILAQ 558
Score = 74 (31.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 21/87 (24%), Positives = 36/87 (41%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
I RLLVP VG ++GK G I+ + +T + I V + A ++ + I P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISIHSTPE 251
Query: 300 VAKRALYEVSTLLHQNPRKDKPPSSFP 326
A + ++ + + K P
Sbjct: 252 GCSAACKMILEIMQKEAKDTKTADEVP 278
Score = 66 (28.3 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 472 SEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSE 531
S F T + +P+ VG I+G+ G I ++ R A I++ P S
Sbjct: 397 SSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKV 450
Query: 532 CIVDIRGSSEHLISAHG 548
+V I G E A G
Sbjct: 451 RMVVITGPPEAQFKAQG 467
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 100 (40.3 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D +STI LL+P + VG ++GK G+ I++L+ TG + ++ LP A
Sbjct: 153 GFHNDVDG-SSTIQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA-- 208
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
D+ ++I+G P ++A V ++ + + D
Sbjct: 209 -DKPLRITGDPFKVQQAREMVLEIIREKDQAD 239
Score = 100 (40.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 28/112 (25%), Positives = 55/112 (49%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ D + + + VP VG ++G+ G++I+++++
Sbjct: 222 QQAREMVLEIIREKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQN 281
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ G I+ P D + P + Q+ G P+ + A + +S L+ +D
Sbjct: 282 DAGVRIQFKPDDGISP-----ERAAQVMGPPDRCQHAAHVISELILTAQERD 328
Score = 94 (38.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 126 ADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIYSSPTK 183
+ T+ +L P+ K+G VIGK G +K L+E T K + + D +P ++ + I P K
Sbjct: 161 SSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFK 220
Query: 184 IAKTQ 188
+ + +
Sbjct: 221 VQQAR 225
Score = 92 (37.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-ADRLP--PCAMN-TDE 290
++ + IT VP+ MVG ++G+ G+ I R+++E+G I++ + +P PC + T E
Sbjct: 73 HQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPE 132
Query: 291 MVQ 293
++
Sbjct: 133 SIE 135
Score = 85 (35.0 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 51/223 (22%), Positives = 94/223 (42%)
Query: 349 NSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCP--PGQMGEVSAEFSMK-ILCS 405
+S P R L G P + +Q R+ ++ C PG +V +++ +L
Sbjct: 117 SSGIPERPCVLTGTPESI------EQAKRLLGQIVDRCRNGPGFHNDVDGSSTIQELLIP 170
Query: 406 AXXXXXXXXXXXFNVKQLQQETGAS-IHVEDAP--TDSDERV-IRASAFEGLWNPRSQTI 461
A +KQLQ+ TG + ++D P T +D+ + I F+ + R +
Sbjct: 171 ASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFK-VQQAREMVL 229
Query: 462 DAILQ-----LQNKTSEFSEK-GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+ I + + +FS + G + + VP VG ++G+ G EM ++ Q D
Sbjct: 230 EIIREKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNG----EMIKKIQND--- 282
Query: 516 VGARVKLQDPHPG-SSECIVDIRGSSEHLI-SAHGTYQSFMTS 556
G R++ + P G S E + G + +AH + +T+
Sbjct: 283 AGVRIQFK-PDDGISPERAAQVMGPPDRCQHAAHVISELILTA 324
Score = 81 (33.6 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 53/199 (26%), Positives = 85/199 (42%)
Query: 186 KTQNKDDDSAA-ETKKESMEPHCAAQDALLKVHDRII---EEDLFGGMA-----SDDDNE 236
+ Q K DD + E + M P Q A + + I+ E D FGG+A +
Sbjct: 286 RIQFKPDDGISPERAAQVMGPPDRCQHAAHVISELILTAQERDGFGGLAVARGRGRGRGD 345
Query: 237 NSTITA------RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
S T VP + G ++GK G+ I+ + ++GA++ + R PP NTD
Sbjct: 346 WSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVEL---QRNPP--PNTDP 400
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPA-PMADMHPLGN 349
+++ V ++ EV+ L + P A+G F PPA P + P +
Sbjct: 401 GLRVFTIRGVPQQI--EVARHLIDE-KVGGSGLGAPGAFGQSPFSQPPAAPHQNTFPPRS 457
Query: 350 SS-WP---AR-NSSLHGMP 363
S +P A+ N + HG P
Sbjct: 458 SGCFPNIAAKVNGNPHGAP 476
Score = 76 (31.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Score = 73 (30.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 48/190 (25%), Positives = 76/190 (40%)
Query: 369 GGYGDQPSRMGSGSIN-SCPPGQMGEV---SAEFSMKILCSAXXXXXXXXXXXFNVKQLQ 424
G GD SRMG GSI S P +G V + E KI A + ++
Sbjct: 242 GVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAA 301
Query: 425 QETGASIHVEDAPTDSDERVIRAS---AFEGLWNPRSQTIDAILQLQNKTSEFSEKGTIT 481
Q G + A E ++ A F GL R + + + S + G
Sbjct: 302 QVMGPPDRCQHAAHVISELILTAQERDGFGGLAVARGRG-----RGRGDWSVGTPGGIQE 356
Query: 482 TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRG 538
VP+ K G ++G+GG I + +++ GA V+LQ +P P + + IRG
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQS-------GAHVELQRNPPPNTDPGLRVFTIRG 409
Query: 539 SSEHL-ISAH 547
+ + ++ H
Sbjct: 410 VPQQIEVARH 419
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 103 (41.3 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D NSTI +L+P + VG ++GK G+ I++L+ TG + ++ LP A
Sbjct: 153 GFHNDIDG-NSTIQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA-- 208
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
D+ ++I+G P ++A V ++ + + D
Sbjct: 209 -DKPLRITGDPFKVQQAREMVLEIIREKDQAD 239
Score = 96 (38.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIY 178
GNS T+ IL P+ K+G VIGK G +K L+E T K + + D +P ++ + I
Sbjct: 160 GNS----TIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRIT 215
Query: 179 SSPTKIAKTQ 188
P K+ + +
Sbjct: 216 GDPFKVQQAR 225
Score = 93 (37.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 27/112 (24%), Positives = 54/112 (48%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ D + + VP VG ++G+ G++I+++++
Sbjct: 222 QQAREMVLEIIREKDQADFRGVRGDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQN 281
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ G I+ P D + P + Q+ G P+ + A + ++ L+ +D
Sbjct: 282 DAGVRIQFKPDDGISP-----ERAAQVMGPPDRCQHAAHVINELILTAQERD 328
Score = 92 (37.4 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-ADRLP--PCAMN-TDE 290
++ + IT VP+ MVG ++G+ G+ I R+++E+G I++ + +P PC + T E
Sbjct: 73 HQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPE 132
Query: 291 MVQ 293
++
Sbjct: 133 SIE 135
Score = 87 (35.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 34/115 (29%), Positives = 51/115 (44%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
VP + G ++GK GD I+ + ++GA++ + R PP NTD ++I + ++
Sbjct: 361 VPADKCGLVIGKGGDNIKSINQQSGAHVEL---QRNPP--PNTDPNLRIFTIRGIPQQI- 414
Query: 306 YEVSTLLHQNPRKDKPPS-SFPQAYGGQNFHSPPAPMADMHPL----GNSSWPAR 355
EV+ H K S P A+G F PPA P N WP R
Sbjct: 415 -EVAR--HLIDEKVGGTSLGAPGAFGQSPFSQPPAAPHQKGPALLATSNPHWPQR 466
Score = 85 (35.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 51/223 (22%), Positives = 94/223 (42%)
Query: 349 NSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCP--PGQMGEVSAEFSMK-ILCS 405
+S P R L G P + +Q R+ ++ C PG ++ +++ IL
Sbjct: 117 SSGIPERPCVLTGTPESI------EQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEILIP 170
Query: 406 AXXXXXXXXXXXFNVKQLQQETGAS-IHVEDAP--TDSDERV-IRASAFEGLWNPRSQTI 461
A +KQLQ+ TG + ++D P T +D+ + I F+ + R +
Sbjct: 171 ASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFK-VQQAREMVL 229
Query: 462 DAILQ-----LQNKTSEFSEK-GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+ I + + +FS + G + + VP VG ++G+ G EM ++ Q D
Sbjct: 230 EIIREKDQADFRGVRGDFSARVGGGSIEVSVPRFAVGIVIGRNG----EMIKKIQND--- 282
Query: 516 VGARVKLQDPHPG-SSECIVDIRGSSEHLI-SAHGTYQSFMTS 556
G R++ + P G S E + G + +AH + +T+
Sbjct: 283 AGVRIQFK-PDDGISPERAAQVMGPPDRCQHAAHVINELILTA 324
Score = 76 (31.8 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Score = 69 (29.3 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 47/190 (24%), Positives = 77/190 (40%)
Query: 369 GGYGDQPSRMGSGSIN-SCPPGQMGEV---SAEFSMKILCSAXXXXXXXXXXXFNVKQLQ 424
G GD +R+G GSI S P +G V + E KI A + ++
Sbjct: 242 GVRGDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAA 301
Query: 425 QETGASIHVEDAPTDSDERVIRAS---AFEGLWNPRSQTIDAILQLQNKTSEFSEKGTIT 481
Q G + A +E ++ A F GL R + + + S + G
Sbjct: 302 QVMGPPDRCQHAAHVINELILTAQERDGFGGLTVARGRG-----RGRGDWSVGAPGGVQE 356
Query: 482 TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRG 538
VP+ K G ++G+GG I + +++ GA V+LQ +P P + I IRG
Sbjct: 357 ITYTVPADKCGLVIGKGGDNIKSINQQS-------GAHVELQRNPPPNTDPNLRIFTIRG 409
Query: 539 SSEHL-ISAH 547
+ + ++ H
Sbjct: 410 IPQQIEVARH 419
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 91 (37.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPP--CAMNTDEMVQISG---- 296
RLLV + G ++GK G+ I+RLR+E A+++V P P C + DE ++
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV-PDSNTPERVCTVTADEKTVLNILKDV 111
Query: 297 ----KPNVAKRALYEVSTLLHQN 315
+ N ++R EV L+HQ+
Sbjct: 112 LPRLEDNFSERDPCEVRMLVHQS 134
Score = 87 (35.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 117 EQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVI 175
E +F P + R+L G +IG+ G+ +K LRE+ A++ + PGS +RV+
Sbjct: 116 EDNFSERDPCEV--RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVL 173
Query: 176 I 176
I
Sbjct: 174 I 174
Score = 86 (35.3 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 36/140 (25%), Positives = 55/140 (39%)
Query: 232 DDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM-NTDE 290
D+ +E R+LV + G L+G+ G I+ LR + A +++ CA +TD
Sbjct: 117 DNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPGSTDR 171
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQA-YGGQNFHSPPAPMADMHPLG- 348
++ SG+ + EV L + P K P Y N +M P G
Sbjct: 172 VLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPAFNYDPSNISDYGGFPGNM-PAGG 230
Query: 349 --NSSWPARNSSLHGMPSTP 366
N+ PA G P P
Sbjct: 231 PPNNRGPAPQRGGQGPPGGP 250
Score = 80 (33.2 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 478 GTITT-RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
G +TT ++ +PS G I+G+GG I +R+ + GA++ L+ + G E I+ I
Sbjct: 314 GPVTTAQVTIPSDLGGTIIGRGGERIARIRQES-------GAQITLEQSN-GQPERIITI 365
Query: 537 RGSSEHLISA 546
+G+ + + SA
Sbjct: 366 KGTEQQIHSA 375
Score = 78 (32.5 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIII 177
R+L S+ G +IGK G +K LR E A + V D+ + ERV +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTV 97
Score = 77 (32.2 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLP 282
TA++ +P+++ G ++G+ G+ I R+R E+GA I + ++ P
Sbjct: 318 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP 359
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 91 (37.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPP--CAMNTDEMVQISG---- 296
RLLV + G ++GK G+ I+RLR+E A+++V P P C + DE ++
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV-PDSNTPERVCTVTADEKTVLNILKDV 111
Query: 297 ----KPNVAKRALYEVSTLLHQN 315
+ N ++R EV L+HQ+
Sbjct: 112 LPRLEDNFSERDPCEVRMLVHQS 134
Score = 87 (35.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 117 EQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVI 175
E +F P + R+L G +IG+ G+ +K LRE+ A++ + PGS +RV+
Sbjct: 116 EDNFSERDPCEV--RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVL 173
Query: 176 I 176
I
Sbjct: 174 I 174
Score = 86 (35.3 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 36/140 (25%), Positives = 55/140 (39%)
Query: 232 DDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM-NTDE 290
D+ +E R+LV + G L+G+ G I+ LR + A +++ CA +TD
Sbjct: 117 DNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPGSTDR 171
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQA-YGGQNFHSPPAPMADMHPLG- 348
++ SG+ + EV L + P K P Y N +M P G
Sbjct: 172 VLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPAFNYDPSNISDYGGFPGNM-PAGG 230
Query: 349 --NSSWPARNSSLHGMPSTP 366
N+ PA G P P
Sbjct: 231 PPNNRGPAPQRGGQGPPGGP 250
Score = 80 (33.2 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 478 GTITT-RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDI 536
G +TT ++ +PS G I+G+GG I +R+ + GA++ L+ + G E I+ I
Sbjct: 314 GPVTTAQVTIPSDLGGTIIGRGGERIARIRQES-------GAQITLEQSN-GQPERIITI 365
Query: 537 RGSSEHLISA 546
+G+ + + SA
Sbjct: 366 KGTEQQIHSA 375
Score = 78 (32.5 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIII 177
R+L S+ G +IGK G +K LR E A + V D+ + ERV +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTV 97
Score = 77 (32.2 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLP 282
TA++ +P+++ G ++G+ G+ I R+R E+GA I + ++ P
Sbjct: 318 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP 359
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 133 (51.9 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 27 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 84
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 85 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 138
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 139 TIAGIPQSII 148
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 56 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 114
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 115 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 147
Score = 116 (45.9 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 56 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 114
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
+R TGA ++V D LP +T+ + I+G P
Sbjct: 115 IRESTGAQVQVA-GDMLPN---STERAITIAGIP 144
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 133 (51.9 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
Score = 116 (45.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
+R TGA ++V D LP +T+ + I+G P
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIP 152
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 101 (40.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 31/114 (27%), Positives = 50/114 (43%)
Query: 222 EEDLFGGMASD-DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-AD 279
+ D FG + S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 77 QNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG 136
Query: 280 RLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 137 GLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 180
Score = 96 (38.9 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 277 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 331
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 332 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 375
Score = 87 (35.7 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 434
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 435 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 493
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 494 HGPPAPYAPQGWGN 507
Score = 81 (33.6 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 178 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 237
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 238 KVQQAK 243
Score = 76 (31.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 160 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 217
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 218 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 275
Query: 338 PAP 340
P P
Sbjct: 276 PIP 278
Score = 72 (30.4 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 429
Query: 542 HL 543
+
Sbjct: 430 QI 431
Score = 70 (29.7 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 100 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 152
Score = 42 (19.8 bits), Expect = 7.5e-05, Sum P(3) = 7.5e-05
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQ + +G ++
Sbjct: 553 GAPTTTQTNGQGDQQNPAPAGQVD 576
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 101 (40.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 31/114 (27%), Positives = 50/114 (43%)
Query: 222 EEDLFGGMASD-DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-AD 279
+ D FG + S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 77 QNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG 136
Query: 280 RLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 137 GLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 180
Score = 96 (38.9 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 277 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 331
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 332 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 375
Score = 87 (35.7 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 434
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 435 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 493
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 494 HGPPAPYAPQGWGN 507
Score = 81 (33.6 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 178 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 237
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 238 KVQQAK 243
Score = 76 (31.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 160 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 217
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 218 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 275
Query: 338 PAP 340
P P
Sbjct: 276 PIP 278
Score = 72 (30.4 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 429
Query: 542 HL 543
+
Sbjct: 430 QI 431
Score = 70 (29.7 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 100 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 152
Score = 42 (19.8 bits), Expect = 7.5e-05, Sum P(3) = 7.5e-05
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQ + +G ++
Sbjct: 553 GAPTTTQTNGQGDQQNPAPAGQVD 576
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 104 (41.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 31/113 (27%), Positives = 50/113 (44%)
Query: 222 EEDLFGGMASD-DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
+ D FG + S +T VP+ MVG ++G+ G+ I R++ E+G I++ PA
Sbjct: 79 QNDSFGNQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPA-- 136
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
L + + ++G P + A LL Q K +P F G N
Sbjct: 137 LDSGGL-PERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 184
Score = 97 (39.2 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 26/105 (24%), Positives = 51/105 (48%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 281 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 335
Query: 306 YEVSTLLHQ----NPRKDKPPSSFPQAYGGQNFH-SPPAPMADMH 345
++ LL NP P + G N++ PP + + +
Sbjct: 336 EIITDLLRSVQAGNPGGPGGPGGRGRGRGQGNWNMGPPGGLQEFN 380
Score = 88 (36.0 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 36/135 (26%), Positives = 53/135 (39%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK-- 302
+VP G ++GK G+ I+ + ++GA I + PP A +M I G P
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKMFTIRGTPQQIDYA 439
Query: 303 RALYEVSTLLHQNPRKDKPPSS----FPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSS 358
R L E NP P P +G P APM +P + P +
Sbjct: 440 RQLIEEKIGGPVNPLGPPVPHGPHGVVPGPHGPPGPPGPGAPMGPYNPAPYNPGPP-GPA 498
Query: 359 LHGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 499 PHGPPAPYAPQGWGN 513
Score = 81 (33.6 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 241
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 242 KVQQAK 247
Score = 76 (31.8 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 164 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 221
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 222 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 279
Query: 338 PAP 340
P P
Sbjct: 280 PIP 282
Score = 71 (30.1 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSECI--VDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKMFTIRGTPQ 434
Query: 542 HL 543
+
Sbjct: 435 QI 436
Score = 65 (27.9 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIP--GSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A + G ER ++ +P +
Sbjct: 102 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPALDSGGLPERSCMLTGTPESV 156
Score = 48 (22.0 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQP+ +G ++
Sbjct: 559 GGPATTQTNGQGDQPNPAPAGQVD 582
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 96 (38.9 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 336
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 337 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 380
Score = 96 (38.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 222 EEDLFGGMASD--DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-A 278
+ D FG S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 81 QNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS 140
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 141 GGLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 185
Score = 87 (35.7 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 439
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 440 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 498
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 499 HGPPAPYAPQGWGN 512
Score = 81 (33.6 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 242
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 243 KVQQAK 248
Score = 76 (31.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 165 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 222
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 223 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 280
Query: 338 PAP 340
P P
Sbjct: 281 PIP 283
Score = 72 (30.4 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 434
Query: 542 HL 543
+
Sbjct: 435 QI 436
Score = 70 (29.7 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 105 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 157
Score = 42 (19.8 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQ + +G ++
Sbjct: 558 GAPTTTQTNGQGDQQNPAPAGQVD 581
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 96 (38.9 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 336
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 337 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 380
Score = 96 (38.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 222 EEDLFGGMASD--DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-A 278
+ D FG S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 81 QNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS 140
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 141 GGLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 185
Score = 87 (35.7 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 439
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 440 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 498
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 499 HGPPAPYAPQGWGN 512
Score = 81 (33.6 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 242
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 243 KVQQAK 248
Score = 76 (31.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 165 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 222
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 223 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 280
Query: 338 PAP 340
P P
Sbjct: 281 PIP 283
Score = 72 (30.4 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 434
Query: 542 HL 543
+
Sbjct: 435 QI 436
Score = 70 (29.7 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 105 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 157
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 96 (38.9 bits), Expect = 9.2e-08, Sum P(3) = 9.2e-08
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 305 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 359
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 360 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 403
Score = 96 (38.9 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 222 EEDLFGGMASD--DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-A 278
+ D FG S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 104 QNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS 163
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 164 GGLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 208
Score = 87 (35.7 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 405 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 462
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 463 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 521
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 522 HGPPAPYAPQGWGN 535
Score = 81 (33.6 bits), Expect = 9.2e-08, Sum P(3) = 9.2e-08
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 206 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 265
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 266 KVQQAK 271
Score = 76 (31.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 188 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 245
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 246 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 303
Query: 338 PAP 340
P P
Sbjct: 304 PIP 306
Score = 72 (30.4 bits), Expect = 9.2e-08, Sum P(3) = 9.2e-08
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 405 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 457
Query: 542 HL 543
+
Sbjct: 458 QI 459
Score = 70 (29.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 128 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 180
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 100 (40.3 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 28/112 (25%), Positives = 55/112 (49%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ D + + + VP VG ++G+ G++I+++++
Sbjct: 222 QQAREMVLEIIREKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQN 281
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ G I+ P D + P + Q+ G P+ + A + +S L+ +D
Sbjct: 282 DAGVRIQFKPDDGISP-----ERAAQVMGPPDRCQHAAHVISELILTAQERD 328
Score = 95 (38.5 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D NST+ + +P + VG ++GK G+ I++L+ TG + ++ LP A
Sbjct: 153 GFHNDVDG-NSTVQ-EIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA-- 208
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
D+ ++I+G P ++A V ++ + + D
Sbjct: 209 -DKPLRITGDPFKVQQAREMVLEIIREKDQAD 239
Score = 92 (37.4 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-ADRLP--PCAMN-TDE 290
++ + IT VP+ MVG ++G+ G+ I R+++E+G I++ + +P PC + T E
Sbjct: 73 HQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPE 132
Query: 291 MVQ 293
++
Sbjct: 133 SIE 135
Score = 90 (36.7 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIY 178
GNS TV I P+ K+G VIGK G +K L+E T K + + D +P ++ + I
Sbjct: 160 GNS----TVQEIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRIT 215
Query: 179 SSPTKIAKTQ 188
P K+ + +
Sbjct: 216 GDPFKVQQAR 225
Score = 80 (33.2 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 51/223 (22%), Positives = 93/223 (41%)
Query: 349 NSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCP--PGQMGEVSAEFSMK-ILCS 405
+S P R L G P + +Q R+ ++ C PG +V +++ I
Sbjct: 117 SSGIPERPCVLTGTPESI------EQAKRLLGQIVDRCRNGPGFHNDVDGNSTVQEIPIP 170
Query: 406 AXXXXXXXXXXXFNVKQLQQETGAS-IHVEDAP--TDSDERV-IRASAFEGLWNPRSQTI 461
A +KQLQ+ TG + ++D P T +D+ + I F+ + R +
Sbjct: 171 ASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFK-VQQAREMVL 229
Query: 462 DAILQ-----LQNKTSEFSEK-GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+ I + + +FS + G + + VP VG ++G+ G EM ++ Q D
Sbjct: 230 EIIREKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNG----EMIKKIQND--- 282
Query: 516 VGARVKLQDPHPG-SSECIVDIRGSSEHLI-SAHGTYQSFMTS 556
G R++ + P G S E + G + +AH + +T+
Sbjct: 283 AGVRIQFK-PDDGISPERAAQVMGPPDRCQHAAHVISELILTA 324
Score = 76 (31.8 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Score = 72 (30.4 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 48/180 (26%), Positives = 71/180 (39%)
Query: 369 GGYGDQPSRMGSGSIN-SCPPGQMGEV---SAEFSMKILCSAXXXXXXXXXXXFNVKQLQ 424
G GD SRMG GSI S P +G V + E KI A + ++
Sbjct: 242 GVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAA 301
Query: 425 QETGASIHVEDAPTDSDERVIRAS---AFEGLWNPRSQTIDAILQLQNKTSEFSEKGTIT 481
Q G + A E ++ A F GL R + + + S + G
Sbjct: 302 QVMGPPDRCQHAAHVISELILTAQERDGFGGLAVARGRG-----RGRGDWSVGTPGGIQE 356
Query: 482 TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSEC---IVDIRG 538
VP+ K G ++G+GG I + +++ GA V+LQ P S++ I IRG
Sbjct: 357 VTYTVPADKCGLVIGKGGENIKSINQQS-------GAHVELQRNPPPSTDPNLRIFTIRG 409
Score = 54 (24.1 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGL 453
N+K + Q++GA + ++ P S + +R GL
Sbjct: 376 NIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGL 410
Score = 40 (19.1 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 594 QSPYHRVNAQQSPYQNINPQQSS-----YPMHTHQGAGTNPHITP 633
Q P +V +QQS Q+ P S Y +H + TP
Sbjct: 496 QQPTQQVPSQQSQPQSSQPDYSKAWEDYYKKQSHAASAAPQASTP 540
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 103 (41.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 39/146 (26%), Positives = 65/146 (44%)
Query: 211 DALLKVHDRI---IEE-DLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLR 266
DA+ K I EE G+ +N T R++ VGC+LG+ L+
Sbjct: 96 DAIFKAFAMIAYKFEEVSRVSGLCEIAENAFGVWTQRVITLGVTVGCVLGQGPLCPPGLK 155
Query: 267 SETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD-----KP 321
TGA ++V D LP +T+ V ISG P+ + + ++ ++ ++P K +P
Sbjct: 156 GSTGAQVQVA-GDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRP 211
Query: 322 -PSSFPQAYGGQNFHSPPAPMADMHP 346
P+S P + G ++ A HP
Sbjct: 212 KPASTPVIFAGGQAYTIQGQYAIPHP 237
Score = 95 (38.5 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 41 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 79
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 43/209 (20%), Positives = 86/209 (41%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTIDAILQLQNKTS--EFSE 476
VK++++E+GA I++ + + ER++ + + ++ + ++ + E +E
Sbjct: 66 VKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAMIAYKFEEVSRVSGLCEIAE 123
Query: 477 K--GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
G T R++ VGC+LGQG ++ T A ++V G D P S+E V
Sbjct: 124 NAFGVWTQRVITLGVTVGCVLGQGPLCPPGLKGSTGAQVQVAG------DMLPNSTERAV 177
Query: 535 DIRGSSEHLISAHGTYQSFMTS----GQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQNM 590
I G+ + +I M G ++ +P P Y
Sbjct: 178 TISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST--PVIFAGGQAYTIQGQYAIP 235
Query: 591 NTQQ-SPYHRVNAQQSPYQNINPQQSSYP 618
+ Q + H++ QQ+P+ + ++P
Sbjct: 236 HPDQLTKLHQLAMQQTPFPPLGQTNPAFP 264
Score = 91 (37.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER++ I + PT
Sbjct: 47 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI-TGPT 95
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 112 (44.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 69/284 (24%), Positives = 119/284 (41%)
Query: 262 IQRLRSETGANIRVLPADRLPPCAMNT-DEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+ RL + G N++ + D ++ ++ + + + + E + K K
Sbjct: 298 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIEPCAKAEEEIMK-K 356
Query: 321 PPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGS 380
S+ N + P +++ LG +P+ +S GMP P +G PS S
Sbjct: 357 IRESYENDIAAMNLQAHLIPGLNLNALG--LFPSSSS---GMPP-PSVG----VPSPTSS 406
Query: 381 GSINSCPP-GQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTD 439
S PP GQ E +E ++ + A ++KQL + GASI + AP +
Sbjct: 407 ---TSYPPFGQQPE--SE-TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKI--APAE 458
Query: 440 SDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F--SEKGTITTRLLVPSSKVGCI 494
+ +R G P +Q A ++ K E F E+ + T + VPS G +
Sbjct: 459 GPDAKLRMVIITG--PPEAQ-FKAQGRIYGKLKEENFFGPKEEVKLETHIKVPSYAAGRV 515
Query: 495 LGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
+G+GG +NE++ T A+ VV R + D + E +V I G
Sbjct: 516 IGKGGKTVNELQNLTSAE--VVVPRDQTPDEN---DEVVVKITG 554
Score = 92 (37.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
R+L P++ +G +IGK G ++++ ++TQ+KI + G+ E+ I I+S+P
Sbjct: 209 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTP 260
Score = 90 (36.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 26/106 (24%), Positives = 54/106 (50%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
+++ ++ EE+ FG E + + VP+ G ++GK G + L++ T A +
Sbjct: 482 RIYGKLKEENFFG------PKEEVKLETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV- 534
Query: 275 VLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
V+P D+ P N + +V+I+G ++ A ++ +L Q R+ +
Sbjct: 535 VVPRDQTPD--ENDEVVVKITGHFYASQLAQRKIQEILAQVRRQQQ 578
Score = 90 (36.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 112 SNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTI-PGS 170
++S+ FG ++TV+ + P+ +G +IGK G +K L A I +A P +
Sbjct: 404 TSSTSYPPFGQQPESETVH-LFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDA 462
Query: 171 EERVIIIYSSPTKIAKTQNK 190
+ R++II P K Q +
Sbjct: 463 KLRMVIITGPPEAQFKAQGR 482
Score = 87 (35.7 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +P VG ++GK+G I++L GA+I++ PA+ P + MV I+G P
Sbjct: 420 TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEG-PDAKLR---MVIITGPPEA 475
Query: 301 AKRA 304
+A
Sbjct: 476 QFKA 479
Score = 78 (32.5 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ D + ER I + S AK
Sbjct: 290 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIEPCAKA 349
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVH 217
+ + + +ES E AA + L+ H
Sbjct: 350 E----EEIMKKIRESYENDIAAMN--LQAH 373
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 98 (39.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 222 EEDLFGGMASD--DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-A 278
+ D FG S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 77 QNDSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS 136
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 137 GGLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 181
Score = 96 (38.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 278 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 332
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 333 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 376
Score = 89 (36.4 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 32/134 (23%), Positives = 58/134 (43%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + + PP A ++ I G P + A
Sbjct: 378 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRSP--PPNADPNMKLFTIRGTPQQIDYA 435
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 436 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 494
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 495 HGPPAPYAPQGWGN 508
Score = 81 (33.6 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 179 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 238
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 239 KVQQAK 244
Score = 76 (31.8 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 161 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 218
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 219 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 276
Query: 338 PAP 340
P P
Sbjct: 277 PIP 279
Score = 71 (30.1 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ P P + + IRG+ +
Sbjct: 378 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRSPPPNADPNMKLFTIRGTPQ 430
Query: 542 HL 543
+
Sbjct: 431 QI 432
Score = 70 (29.7 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 101 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 153
Score = 42 (19.8 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQ + +G ++
Sbjct: 554 GAPATTQTNGQGDQQAPAPAGQVD 577
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 130 (50.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 65/272 (23%), Positives = 118/272 (43%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQA--KITVADTIPGSEERVIIIY 178
G + + ++L PS G +IGK G + L++ET A K++ + + +
Sbjct: 56 GFHEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 115
Query: 179 SSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENS 238
+ N D AE +E P A + + I++ N +
Sbjct: 116 QGTVEAL---NNVHDFIAEKVREM--PQSAQKTEPVS----ILQPQT-------TVNPDR 159
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGK 297
A+L+VPN+ G ++GK G ++ + ++GA +++ P +N E +V ISG+
Sbjct: 160 VKQAKLVVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQERVVTISGE 215
Query: 298 PNVAKRALYEVSTLLHQNPRKDKPPS-SFPQAYGG-QNFH---SPPAPMADMHPLGNSSW 352
P ++A+ + + ++P+ + S+ G N + SP A A++ P ++
Sbjct: 216 PEQNRKAVEIIVQKIQEDPQSSSCLNISYSNISGPVANSNPTGSPYANSAEVMPAAAAAA 275
Query: 353 PARNSSLHGMPSTPWMGGYGDQPSRMGSGSIN 384
A SSL G S + G G P+ M S S N
Sbjct: 276 AATASSLLGQAS---LAGVGAFPTTMSSFSGN 304
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 42/148 (28%), Positives = 70/148 (47%)
Query: 432 HVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFS-------EKGTITTRL 484
H+E P DS +R + E R+ T D Q FS E+G ++
Sbjct: 9 HMESDPPDSRKRPLETPT-EASSTKRTNTGDRCNQAAIHDPPFSSDIVGFHEEGEYFLKV 67
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLI 544
L+PS G I+G+GG I ++++ T A I++ K +D +PG++E + I+G+ E L
Sbjct: 68 LIPSYAAGSIIGKGGQTIVQLQKETGATIKLS----KSKDFYPGTTERVCLIQGTVEALN 123
Query: 545 SAHGTYQSFMTSGQSMKVQPSSYQNINP 572
+ H F+ + ++ P S Q P
Sbjct: 124 NVH----DFIA--EKVREMPQSAQKTEP 145
Score = 70 (29.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 471 TSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSS 530
T + +E + VP + VG ILG+GG + E + T A I++ K + PG+
Sbjct: 408 TEKLAEGAKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFVPGTR 463
Query: 531 ECIVDIRGS 539
V I GS
Sbjct: 464 NRKVTITGS 472
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 96 (38.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 322 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 376
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 377 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 420
Score = 87 (35.7 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 422 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 479
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 480 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 538
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 539 HGPPAPYAPQGWGN 552
Score = 81 (33.6 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 223 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 282
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 283 KVQQAK 288
Score = 76 (31.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 205 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 262
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 263 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 320
Query: 338 PAP 340
P P
Sbjct: 321 PIP 323
Score = 72 (30.4 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 422 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 474
Query: 542 HL 543
+
Sbjct: 475 QI 476
Score = 70 (29.7 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 145 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 197
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 103 (41.3 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 227 GGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286
GG S D IT ++ +P ++ G ++GK G I+++R E+GA+I++ D P
Sbjct: 340 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE--PLEG 394
Query: 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314
+ D ++ I+G + + A Y + + Q
Sbjct: 395 SEDRIITITGTQDQIQNAQYLLQNSVKQ 422
Score = 102 (41.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 65/269 (24%), Positives = 105/269 (39%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDS 194
P+ + G GK + + EE QA +T E R I++ S K +T S
Sbjct: 11 PNTETNGEFGKRP--AEDMEEE-QAFKRSRNTDEMVELR-ILLQSKNIKALRTDYNASVS 66
Query: 195 AAETK-KESMEPHCAAQDALLKVHDRIIE--EDLFGGMASDDDNENSTITARLLVPNNMV 251
++ E + A + + ++ +II E+ SD D E RLL+ ++
Sbjct: 67 VPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFDCE-----LRLLIHQSLA 121
Query: 252 GCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTL 311
G ++G +G I+ LR T I++ C +TD +V I GKP+ + + L
Sbjct: 122 GGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVVECIKIILDL 177
Query: 312 LHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMADMHPLGNSSWPARNSSLHGMP 363
+ ++P K + P P+ + + Y GG F G + G P
Sbjct: 178 ISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRP 237
Query: 364 STPWMGGYGDQPSRMGSGSINSCPPGQMG 392
P Y D R G PPG+ G
Sbjct: 238 MPPSRRDYDDMSPRRGPPPP---PPGRGG 263
Score = 98 (39.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 353 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 405
Query: 540 SEHLISAHGTYQS 552
+ + +A Q+
Sbjct: 406 QDQIQNAQYLLQN 418
Score = 91 (37.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSPTKIA 185
D R+L GG+IG G +K LRE TQ I + + P S +RV++I P ++
Sbjct: 109 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVV 168
Query: 186 K 186
+
Sbjct: 169 E 169
Score = 67 (28.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 375 IKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLLQNSVKQYSGK 426
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 122 (48.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 56/259 (21%), Positives = 112/259 (43%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSS 180
G + ++L PS G +IGK G + L++ET A I ++ S++ Y
Sbjct: 50 GRGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK----SKD----FYPG 101
Query: 181 PT-KIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDD-NENS 238
T ++ Q AE + H + + ++ + + ++ + N +
Sbjct: 102 TTERVCLVQG-----TAEALNAA---HSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDR 153
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGK 297
A+L+VPN+ G ++GK G ++ + ++GA +++ P +N E +V +SG+
Sbjct: 154 AKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQERVVTVSGE 209
Query: 298 PNVAKRALYEVSTLLHQNPRKDKPPS-SFPQAYGG-QNFH---SPPAPMADMHPLGNSSW 352
P +A+ + + ++P+ + S+ G N + SP A AD+ P ++
Sbjct: 210 PEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAAS 269
Query: 353 PARNSSLHGMPSTPWMGGY 371
A S L G +G +
Sbjct: 270 AAAASGLLGPAGLAGVGAF 288
Score = 79 (32.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+E + VP + VG ILG+GG + E + T A I++ K + PG+ V
Sbjct: 426 AESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFLPGTRNRRV 481
Query: 535 DIRGS------SEHLISAHGTYQSFMTSGQSMKV 562
I GS +++LIS TY+ + + KV
Sbjct: 482 TITGSPAATQAAQYLISQRVTYEQGVRASNPQKV 515
>UNIPROTKB|Q5T6W2 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00910458 SMR:Q5T6W2 Ensembl:ENST00000457156
Uniprot:Q5T6W2
Length = 379
Score = 101 (40.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 40/158 (25%), Positives = 63/158 (39%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
RLL+ ++ G ++G +G I+ LR T I++ C +TD +V I GKP+
Sbjct: 124 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 179
Query: 303 RALYEVSTLLHQNPRKDK--P--PSSFPQAY--GG--QNFHSPPAPMADMHPLGNSSWPA 354
+ + L+ ++P K + P P+ + + Y GG F G +
Sbjct: 180 ECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDR 239
Query: 355 RNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392
G P P Y D R G PPG+ G
Sbjct: 240 MPPGRGGRPMPPSRRDYDDMSPRRGPPPP---PPGRGG 274
Score = 97 (39.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 117 EQSFGNSQPADTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
EQ+F S+ D + RIL S+ G VIGK G +K+LR + A ++V D+ ER+
Sbjct: 30 EQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERI 87
Query: 175 IIIYSSPTKIAKTQNK 190
+ I + I + K
Sbjct: 88 LSISADIETIGEILKK 103
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 154 (59.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 70/271 (25%), Positives = 110/271 (40%)
Query: 128 TVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKT 187
T +I P+ ++G +IGK G +K L+ ++ AKI V + + + T
Sbjct: 134 TTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPN------CATRTVDLT 187
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVP 247
D S AE + A + GG A D + +P
Sbjct: 188 GTPDQISKAEQLITDVLQEAEAGNTAGSGGGG---GRRMGGQAGADQFV-------MKIP 237
Query: 248 NNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYE 307
NN VG ++GK G+ I+ ++++TGA I+V+P LPP + +QI G + A
Sbjct: 238 NNKVGLIIGKGGETIKSMQAKTGARIQVIPL-HLPPGDPTPERTLQIDGITEQIEHAKQL 296
Query: 308 VSTLLH-QNP-RKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLH--GMP 363
V+ ++ +N R +PQ G Q PP+ A P G + P + P
Sbjct: 297 VNEIISGENRMRNSAMGGGYPQQGGYQA--RPPSSWAP--PGGPPAQPGYGGYMQPGAYP 352
Query: 364 STPWMGG--YGDQPSRMGSGSIN--SCPPGQ 390
P G YG P + +G + S PP Q
Sbjct: 353 GPPQYGQSPYGSYPQQTSAGYYDQSSVPPSQ 383
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 98 (39.6 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 35/149 (23%), Positives = 69/149 (46%)
Query: 216 VHDRIIEE-DLFGGMASDDDNENSTIT--ARLLVPNNMVGCLLGKRGDVIQRLRSETGAN 272
+ D+I E+ DL + D + ++LVPN+ G ++GK G I++++ E+G+
Sbjct: 165 IMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSY 224
Query: 273 IRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPS-SFPQAYGG 331
+++ + P + + I G K A + + + ++P+ + S+ G
Sbjct: 225 VQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGP 281
Query: 332 -QNFHSPPAPMADMHPLGNSSWPARNSSL 359
NF+ +P A NSS + NS+L
Sbjct: 282 VANFNPTGSPYATNQNAINSSTASLNSTL 310
Score = 95 (38.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 127 DTVY--RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSP 181
+T Y +IL P+ G +IGK G + SL+++T A++ ++ D PG+ ERV +I S
Sbjct: 96 ETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGST 155
Query: 182 TKI 184
I
Sbjct: 156 EAI 158
Score = 81 (33.6 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
VP ++G +LG G + ++ +GAN+++ P N +V I+G+P+ +A
Sbjct: 523 VPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRN--RIVTITGQPSAIAKAQ 580
Query: 306 YEVSTLLHQNPRK 318
Y + +++ K
Sbjct: 581 YLIEQKINEEETK 593
Score = 51 (23.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLIS 545
VP +G ILG G + E++ + A++++ + PG+ IV I G +
Sbjct: 523 VPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFA----PGTRNRIVTITGQPSAIAK 578
Query: 546 A 546
A
Sbjct: 579 A 579
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 96 (38.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 222 EEDLFGGMASD--DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-A 278
+ D FG S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 81 QNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS 140
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 141 GGLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 185
Score = 92 (37.4 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 27/105 (25%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P + + QI+G P+ + A
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----ERIAQITGPPDRCQHAA 336
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 337 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 380
Score = 87 (35.7 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 439
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 440 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 498
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 499 HGPPAPYAPQGWGN 512
Score = 81 (33.6 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 242
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 243 KVQQAK 248
Score = 76 (31.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 165 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 222
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 223 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 280
Query: 338 PAP 340
P P
Sbjct: 281 PIP 283
Score = 72 (30.4 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 434
Query: 542 HL 543
+
Sbjct: 435 QI 436
Score = 70 (29.7 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 105 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 157
Score = 42 (19.8 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQ + +G ++
Sbjct: 558 GAPTTTQTNGQGDQQNPAPAGQVD 581
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 100 (40.3 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 28/112 (25%), Positives = 56/112 (50%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ D ++ + + VP VG ++G+ G++I+++++
Sbjct: 222 QQAREMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQN 281
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ G I+ P D + P + Q+ G P+ + A + +S L+ +D
Sbjct: 282 DAGVRIQFKPDDGISP-----ERAAQVMGPPDRCQHAAHIISELILTAQERD 328
Score = 93 (37.8 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D+ NSTI +L+P + VG ++G+ G+ I++L+ TG + ++ LP A
Sbjct: 153 GFHNDIDS-NSTIQ-EILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGA-- 208
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
D+ ++I+G ++A V ++ + + D
Sbjct: 209 -DKPLRITGDAFKVQQAREMVLEIIREKDQAD 239
Score = 89 (36.4 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 51/202 (25%), Positives = 85/202 (42%)
Query: 186 KTQNKDDDSAA-ETKKESMEPHCAAQDALLKVHDRII---EEDLFGGMASDDDNENS--- 238
+ Q K DD + E + M P Q A + + I+ E D FGG+A+
Sbjct: 286 RIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTAQERDGFGGLAAARGRGRGRGD 345
Query: 239 -TITA-------RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE 290
++ A VP + G ++GK G+ I+ + ++GA++ + R PP N+D
Sbjct: 346 WSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVEL---QRNPP--PNSDP 400
Query: 291 MVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAP--MADMHPLG 348
++ V ++ EV+ L + P A+G F PPAP P
Sbjct: 401 NLRRFTIRGVPQQI--EVARQLIDE-KVGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPRS 457
Query: 349 NSSWPARNSSLHGMP-STPWMG 369
+ +P + ++G P STP G
Sbjct: 458 SGCFPNMAAKVNGNPHSTPVSG 479
Score = 84 (34.6 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 128 TVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIYSSPTKIA 185
T+ IL P+ K+G VIG+ G +K L+E T K + + D +P ++ + I K+
Sbjct: 163 TIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQ 222
Query: 186 KTQ 188
+ +
Sbjct: 223 QAR 225
Score = 76 (31.8 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Score = 74 (31.1 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 48/185 (25%), Positives = 73/185 (39%)
Query: 369 GGYGDQPSRMGSGSIN-SCPPGQMGEV---SAEFSMKILCSAXXXXXXXXXXXFNVKQLQ 424
G GD SRMG GSI S P +G V + E KI A + ++
Sbjct: 242 GVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAA 301
Query: 425 QETGASIHVEDAPTDSDERVIRAS---AFEGLWNPRSQTIDAILQLQNKTSEFSEKGTIT 481
Q G + A E ++ A F GL R + + + S + G
Sbjct: 302 QVMGPPDRCQHAAHIISELILTAQERDGFGGLAAARGRG-----RGRGDWSVGAPGGVQE 356
Query: 482 TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSECI--VDIRG 538
VP+ K G ++G+GG I + +++ GA V+LQ +P P S + IRG
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQS-------GAHVELQRNPPPNSDPNLRRFTIRG 409
Query: 539 SSEHL 543
+ +
Sbjct: 410 VPQQI 414
Score = 46 (21.3 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 34/155 (21%), Positives = 59/155 (38%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKG 478
N+K + Q++GA + ++ P + + +R G+ P Q I+ QL ++ + G
Sbjct: 376 NIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGV--P--QQIEVARQLIDEKVGGTNLG 431
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
P S+ Q N R+ + A+V +PH + G
Sbjct: 432 APGAFGQSPFSQPPAPPHQ-----NTFPPRSSGCFPNMAAKVN-GNPHS------TPVSG 479
Query: 539 SSEHLISAHG-TYQSFMTSGQSMKVQPSSYQNINP 572
L G TYQ++ Q + Q S Q+ P
Sbjct: 480 PPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQP 514
Score = 38 (18.4 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 594 QSPYHRVNAQQSPYQNINPQQS 615
Q P +V +QQS Q+ P S
Sbjct: 496 QQPTQQVPSQQSQPQSSQPNYS 517
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 90 (36.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS-EERVIIIYSSPTKI 184
R+L +++G +IGK G VK +RE++ A+IT+++ GS ER+ I S +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTITGSTAAV 72
Score = 86 (35.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 227 GGMASDDDNENS-TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
GG+ +++ E S T+T R+L+ VG ++GK+G+ ++R+R ++ A I +
Sbjct: 6 GGL--EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI 53
Score = 67 (28.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVI 262
++EDL A+ + +T RL++P + G L+GK G I
Sbjct: 83 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Score = 54 (24.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 480 ITTRLLVPSSKVGCILGQGG 499
+T RL++P+S+ G ++G+ G
Sbjct: 102 VTLRLVIPASQCGSLIGKAG 121
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 91 (37.1 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAD 279
++VP + VG ++GK+GD I+RL ETG I+ P D
Sbjct: 253 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDD 288
Score = 79 (32.9 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 54/244 (22%), Positives = 91/244 (37%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNK-TSEFSEKG 478
+K+L ETG I + P D R + G + + + I +L K T + G
Sbjct: 271 IKRLAMETGTKIQFK--PDDDPSTPERCAVIMGTRDQIYRATERITELVKKSTMQQGGGG 328
Query: 479 TI----------TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKL-QDPHP 527
+ T + VP++K G ++G+GG I ++ + GA +L +DP
Sbjct: 329 NVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSES-------GAHCELSRDPTG 381
Query: 528 GSSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNINPXXXXXXXXXXXXXXY 587
+ E + I+G + H + + G + P++
Sbjct: 382 NADEKVFVIKGGKRAI--EHAKHLIRIKVGD---IAPNT--PFRDDSAMTMQTQFSAPAQ 434
Query: 588 QNMNTQQ--SPYHRVNAQ-QSPYQNINPQQSSYPMHTHQGAGTNPHITPTQXXXXXXXAQ 644
N QQ +P ++ A Q+PYQ QQ+S ++ Q A P P Q
Sbjct: 435 NNFGGQQQWNPVAQIPAAAQNPYQVGGWQQNS--VYAQQTAA--PAAAPYAAAGIVQPQQ 490
Query: 645 QGTY 648
Q Y
Sbjct: 491 QVAY 494
Score = 76 (31.8 bits), Expect = 0.00033, Sum P(3) = 0.00032
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T + +P N G ++GK GD I++L+ ++G + +L D + + ++I+G P
Sbjct: 156 TIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDN--QSVSDQSKPLRITGDPQK 212
Query: 301 AKRALYEVSTLLH 313
+ A V+ +L+
Sbjct: 213 IELAKQLVAEILN 225
Score = 74 (31.1 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 112 SNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVADTIPGS 170
S + R Q +G + A T I P + G +IGK+G+ ++ L+E++ K I V D S
Sbjct: 141 SQNPRPQ-YGFPR-AQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVS 198
Query: 171 EE-RVIIIYSSPTKI 184
++ + + I P KI
Sbjct: 199 DQSKPLRITGDPQKI 213
Score = 58 (25.5 bits), Expect = 9.0e-06, Sum P(3) = 9.0e-06
Identities = 12/66 (18%), Positives = 35/66 (53%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSPTKIAKTQNKDDD 193
P +G VIG+ G+ ++ ++ + ++ ++ D P S R++ + S + + ++ ++
Sbjct: 77 PESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETAKHLINE 136
Query: 194 SAAETK 199
A ++
Sbjct: 137 VVARSQ 142
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 91 (37.1 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAD 279
++VP + VG ++GK+GD I+RL ETG I+ P D
Sbjct: 253 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDD 288
Score = 79 (32.9 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 54/244 (22%), Positives = 91/244 (37%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNK-TSEFSEKG 478
+K+L ETG I + P D R + G + + + I +L K T + G
Sbjct: 271 IKRLAMETGTKIQFK--PDDDPSTPERCAVIMGTRDQIYRATERITELVKKSTMQQGGGG 328
Query: 479 TI----------TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKL-QDPHP 527
+ T + VP++K G ++G+GG I ++ + GA +L +DP
Sbjct: 329 NVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSES-------GAHCELSRDPTG 381
Query: 528 GSSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNINPXXXXXXXXXXXXXXY 587
+ E + I+G + H + + G + P++
Sbjct: 382 NADEKVFVIKGGKRAI--EHAKHLIRIKVGD---IAPNT--PFRDDSAMTMQTQFSAPAQ 434
Query: 588 QNMNTQQ--SPYHRVNAQ-QSPYQNINPQQSSYPMHTHQGAGTNPHITPTQXXXXXXXAQ 644
N QQ +P ++ A Q+PYQ QQ+S ++ Q A P P Q
Sbjct: 435 NNFGGQQQWNPVAQIPAAAQNPYQVGGWQQNS--VYAQQTAA--PAAAPYAAAGIVQPQQ 490
Query: 645 QGTY 648
Q Y
Sbjct: 491 QVAY 494
Score = 76 (31.8 bits), Expect = 0.00033, Sum P(3) = 0.00032
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T + +P N G ++GK GD I++L+ ++G + +L D + + ++I+G P
Sbjct: 156 TIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDN--QSVSDQSKPLRITGDPQK 212
Query: 301 AKRALYEVSTLLH 313
+ A V+ +L+
Sbjct: 213 IELAKQLVAEILN 225
Score = 74 (31.1 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 112 SNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVADTIPGS 170
S + R Q +G + A T I P + G +IGK+G+ ++ L+E++ K I V D S
Sbjct: 141 SQNPRPQ-YGFPR-AQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVS 198
Query: 171 EE-RVIIIYSSPTKI 184
++ + + I P KI
Sbjct: 199 DQSKPLRITGDPQKI 213
Score = 58 (25.5 bits), Expect = 9.0e-06, Sum P(3) = 9.0e-06
Identities = 12/66 (18%), Positives = 35/66 (53%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSPTKIAKTQNKDDD 193
P +G VIG+ G+ ++ ++ + ++ ++ D P S R++ + S + + ++ ++
Sbjct: 77 PESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETAKHLINE 136
Query: 194 SAAETK 199
A ++
Sbjct: 137 VVARSQ 142
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 96 (38.9 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 222 EEDLFGGMASD--DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-A 278
+ D FG S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 81 QNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS 140
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 141 GGLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 185
Score = 92 (37.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 27/105 (25%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P + + QI+G P+ + A
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----ERIAQITGPPDRCQHAA 336
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 337 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 380
Score = 87 (35.7 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 439
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 440 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 498
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 499 HGPPAPYAPQGWGN 512
Score = 81 (33.6 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 242
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 243 KVQQAK 248
Score = 76 (31.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 165 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 222
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 223 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 280
Query: 338 PAP 340
P P
Sbjct: 281 PIP 283
Score = 72 (30.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 434
Query: 542 HL 543
+
Sbjct: 435 QI 436
Score = 70 (29.7 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 105 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 157
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQ + +G ++
Sbjct: 558 GAPTTTQTNGQGDQQNPAPAGQVD 581
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 96 (38.9 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 222 EEDLFGGMASD--DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-A 278
+ D FG S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 102 QNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS 161
Query: 279 DRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQN 333
LP + ++G P + A LL Q K +P F G N
Sbjct: 162 GGLP------ERSCMLTGTPESVQSA----KRLLDQIVEKGRPAPGFHHGDGPGN 206
Score = 92 (37.4 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 27/105 (25%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P + + QI+G P+ + A
Sbjct: 303 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----ERIAQITGPPDRCQHAA 357
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 358 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 401
Score = 87 (35.7 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 32/134 (23%), Positives = 57/134 (42%)
Query: 245 LVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP---NVA 301
+VP G ++GK G+ I+ + ++GA I + PP A ++ I G P + A
Sbjct: 403 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 460
Query: 302 KRALYE-VSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSL 359
++ + E + ++ P P P +G P PM +P + P +
Sbjct: 461 RQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP-GPAP 519
Query: 360 HGMPSTPWMGGYGD 373
HG P+ G+G+
Sbjct: 520 HGPPAPYAPQGWGN 533
Score = 81 (33.6 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 204 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 263
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 264 KVQQAK 269
Score = 76 (31.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 26/123 (21%), Positives = 53/123 (43%)
Query: 218 DRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D+I+E+ D + + +++P + G ++GK G+ I++L+ G + V+
Sbjct: 186 DQIVEKGRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMI 243
Query: 278 ADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSP 337
D P D+ ++I+G P ++A V L+ + + + GG
Sbjct: 244 QDG--PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV 301
Query: 338 PAP 340
P P
Sbjct: 302 PIP 304
Score = 72 (30.4 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 403 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 455
Query: 542 HL 543
+
Sbjct: 456 QI 457
Score = 70 (29.7 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 126 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 178
Score = 42 (19.8 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQ + +G ++
Sbjct: 579 GAPTTTQTNGQGDQQNPAPAGQVD 602
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 118 (46.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 54/249 (21%), Positives = 109/249 (43%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT-KIAKTQN 189
++L PS G +IGK G + L++ET A I ++ S++ Y T ++ Q
Sbjct: 8 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK----SKD----FYPGTTERVCLVQG 59
Query: 190 KDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDD-NENSTITARLLVPN 248
T + H + + ++ + + ++ + N + A+L+VPN
Sbjct: 60 --------TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN 111
Query: 249 NMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKPNVAKRALYE 307
+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P +A+
Sbjct: 112 STAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQERVVTVSGEPEQVHKAVSA 167
Query: 308 VSTLLHQNPRKDKPPS-SFPQAYGG-QNFH---SPPAPMADMHPLGNSSWPARNSSLHGM 362
+ + ++P+ + S+ G N + SP A AD+ P ++ A S L G
Sbjct: 168 IVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGP 227
Query: 363 PSTPWMGGY 371
+G +
Sbjct: 228 AGLAGVGAF 236
Score = 79 (32.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+E + VP + VG ILG+GG + E + T A I++ K + PG+ V
Sbjct: 374 AESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFLPGTRNRRV 429
Query: 535 DIRGS------SEHLISAHGTYQSFMTSGQSMKV 562
I GS +++LIS TY+ + + KV
Sbjct: 430 TITGSPAATQAAQYLISQRVTYEQGVRASNPQKV 463
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 118 (46.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 54/249 (21%), Positives = 109/249 (43%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT-KIAKTQN 189
++L PS G +IGK G + L++ET A I ++ S++ Y T ++ Q
Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK----SKD----FYPGTTERVCLVQG 87
Query: 190 KDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDD-NENSTITARLLVPN 248
T + H + + ++ + + ++ + N + A+L+VPN
Sbjct: 88 --------TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN 139
Query: 249 NMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKPNVAKRALYE 307
+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P +A+
Sbjct: 140 STAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQERVVTVSGEPEQVHKAVSA 195
Query: 308 VSTLLHQNPRKDKPPS-SFPQAYGG-QNFH---SPPAPMADMHPLGNSSWPARNSSLHGM 362
+ + ++P+ + S+ G N + SP A AD+ P ++ A S L G
Sbjct: 196 IVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGP 255
Query: 363 PSTPWMGGY 371
+G +
Sbjct: 256 AGLAGVGAF 264
Score = 79 (32.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+E + VP + VG ILG+GG + E + T A I++ K + PG+ V
Sbjct: 402 AESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFLPGTRNRRV 457
Query: 535 DIRGS------SEHLISAHGTYQSFMTSGQSMKV 562
I GS +++LIS TY+ + + KV
Sbjct: 458 TITGSPAATQAAQYLISQRVTYEQGVRASNPQKV 491
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 93 (37.8 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 34/131 (25%), Positives = 59/131 (45%)
Query: 210 QDALLKVHDRIIEE---DLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLR 266
++A+ K II++ DL +A+ ++ L+VP+ G L+GK G I+ +R
Sbjct: 65 RNAIFKAFAMIIDKLEGDLSSSIANSTAASRPSVNLCLVVPDCQCGSLIGKGGCKIKEIR 124
Query: 267 SETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFP 326
TGA ++V A + P +T+ I+G P + + ++ + P PP
Sbjct: 125 ENTGAQVQV--AGHMLP--NSTEWAFTIAGIPQSIIECVKQFCVVMLEIP--SLPPKGVT 178
Query: 327 QAYGGQNFHSP 337
Y Q SP
Sbjct: 179 IPYWPQPSGSP 189
Score = 86 (35.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/97 (31%), Positives = 48/97 (49%)
Query: 90 FKKRPNNQFKRKGVVGIK-KGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGN 148
F + N FK ++ K +G+ S SS S S+P+ + ++ P + G +IGK G
Sbjct: 61 FAGQRNAIFKAFAMIIDKLEGDLS-SSIANSTAASRPSVNLCLVV-PDCQCGSLIGKGGC 118
Query: 149 IVKSLREETQAKITVAD-TIPGSEERVIIIYSSPTKI 184
+K +RE T A++ VA +P S E I P I
Sbjct: 119 KIKEIRENTGAQVQVAGHMLPNSTEWAFTIAGIPQSI 155
Score = 83 (34.3 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L VP+ +GCI+ G INE+ QA GA++K+ +P GS++ V I G
Sbjct: 252 TTSHELTVPNDLIGCIIRHQGAEINEV---CQA----CGAQIKIANPMEGSTDWQVTITG 304
Query: 539 SS 540
S+
Sbjct: 305 ST 306
Score = 83 (34.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G + D T + L VPN+++GC++ +G I + GA I++ A+ P +
Sbjct: 241 GYCAGLDASAQTTSHELTVPNDLIGCIIRHQGAEINEVCQACGAQIKI--AN---PMEGS 295
Query: 288 TDEMVQISGKPNVAKRALYEVSTLL 312
TD V I+G A Y +S L
Sbjct: 296 TDWQVTITGSTASISLAQYLISVRL 320
Score = 78 (32.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVL 276
N T+T RLL+ VG ++GK+G+ ++L E G I +L
Sbjct: 11 NVTLTIRLLMHGKEVGSIMGKKGESARKLCEECGTLINIL 50
Score = 56 (24.8 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAK 186
R+L +++G ++GK G + L EE I + + ER+I I K
Sbjct: 17 RLLMHGKEVGSIMGKKGESARKLCEECGTLINILEE--NCLERIITFAGQRNAIFK 70
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 145 (56.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 47/199 (23%), Positives = 93/199 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 12 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 71
Query: 188 QNKDDDSAAETKKE--SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA--- 242
+ E + EP Q DRI ++ L + + + +T
Sbjct: 72 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI-KQTLPSSPTTTKSSPSDPMTTSRA 130
Query: 243 ---RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKP 298
+++VPN+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P
Sbjct: 131 NQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQERVVTVSGEP 186
Query: 299 NVAKRALYEVSTLLHQNPR 317
++A+ + + ++P+
Sbjct: 187 EQNRKAVELIIQKIQEDPQ 205
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 118 (46.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 54/249 (21%), Positives = 109/249 (43%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT-KIAKTQN 189
++L PS G +IGK G + L++ET A I ++ S++ Y T ++ Q
Sbjct: 46 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK----SKD----FYPGTTERVCLVQG 97
Query: 190 KDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDD-NENSTITARLLVPN 248
T + H + + ++ + + ++ + N + A+L+VPN
Sbjct: 98 --------TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN 149
Query: 249 NMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKPNVAKRALYE 307
+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P +A+
Sbjct: 150 STAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQERVVTVSGEPEQVHKAVSA 205
Query: 308 VSTLLHQNPRKDKPPS-SFPQAYGG-QNFH---SPPAPMADMHPLGNSSWPARNSSLHGM 362
+ + ++P+ + S+ G N + SP A AD+ P ++ A S L G
Sbjct: 206 IVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGP 265
Query: 363 PSTPWMGGY 371
+G +
Sbjct: 266 AGLAGVGAF 274
Score = 79 (32.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+E + VP + VG ILG+GG + E + T A I++ K + PG+ V
Sbjct: 412 AESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFLPGTRNRRV 467
Query: 535 DIRGS------SEHLISAHGTYQSFMTSGQSMKV 562
I GS +++LIS TY+ + + KV
Sbjct: 468 TITGSPAATQAAQYLISQRVTYEQGVRASNPQKV 501
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 136 (52.9 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 41/135 (30%), Positives = 67/135 (49%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD----- 319
+R TGA ++V D LP +T+ + I+G P + ++ ++ ++P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY 178
Query: 320 KP-PSSFPQAY-GGQ 332
+P PSS P + GGQ
Sbjct: 179 RPKPSSSPVIFAGGQ 193
Score = 133 (51.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 118 (46.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 54/249 (21%), Positives = 109/249 (43%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT-KIAKTQN 189
++L PS G +IGK G + L++ET A I ++ S++ Y T ++ Q
Sbjct: 98 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK----SKD----FYPGTTERVCLVQG 149
Query: 190 KDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDD-NENSTITARLLVPN 248
T + H + + ++ + + ++ + N + A+L+VPN
Sbjct: 150 --------TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN 201
Query: 249 NMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKPNVAKRALYE 307
+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P +A+
Sbjct: 202 STAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQERVVTVSGEPEQVHKAVSA 257
Query: 308 VSTLLHQNPRKDKPPS-SFPQAYGG-QNFH---SPPAPMADMHPLGNSSWPARNSSLHGM 362
+ + ++P+ + S+ G N + SP A AD+ P ++ A S L G
Sbjct: 258 IVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGP 317
Query: 363 PSTPWMGGY 371
+G +
Sbjct: 318 AGLAGVGAF 326
Score = 79 (32.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+E + VP + VG ILG+GG + E + T A I++ K + PG+ V
Sbjct: 464 AESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFLPGTRNRRV 519
Query: 535 DIRGS------SEHLISAHGTYQSFMTSGQSMKV 562
I GS +++LIS TY+ + + KV
Sbjct: 520 TITGSPAATQAAQYLISQRVTYEQGVRASNPQKV 553
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 148 (57.2 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 99/459 (21%), Positives = 189/459 (41%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT----VEA 108
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVP 247
N AE +E M + A + + I++ N + +++VP
Sbjct: 109 LNAVHGFIAEKIRE-MPQNVAKTEPV-----SILQPQT-------TVNPDRIKQVKIIVP 155
Query: 248 NNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKPNVAKRALY 306
N+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P ++A+
Sbjct: 156 NSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQERVVTVSGEPEQNRKAVE 211
Query: 307 EVSTLLHQNPRKDKPPS-SFPQAYGG-QNFH---SPPAPMADMHPLGNSSWPAR-NSSLH 360
+ + ++P+ + S+ G N + SP A A++ P ++ +++L
Sbjct: 212 LIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLLGHANLA 271
Query: 361 GMPSTPW-MGGYGDQPSRMGSGSINSCPP-----GQMG-EVSAEFSMKILCSAXXXXXXX 413
G+ + P + G+ + ++N+ +G +S + L +A
Sbjct: 272 GVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPA 331
Query: 414 XXXXFNVKQLQQETGASIHVEDAPTDS---DERVIRASAFEGLWNPRSQ-TIDAILQLQN 469
+ E AS + +A G + S AIL +
Sbjct: 332 AAAANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEK 391
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGS 529
T K + + VP + VG ILG+GG + E + T A I++ K + PG+
Sbjct: 392 STD--GSKDVV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFVPGT 443
Query: 530 SECIVDIRGS------SEHLISAHGTYQSFMTSGQSMKV 562
V I G+ +++LI+ TY+ + + KV
Sbjct: 444 RNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKV 482
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 144 (55.7 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 49/166 (29%), Positives = 78/166 (46%)
Query: 205 PHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQR 264
P A A + D++ EED+ M + +T RL+VP + G L+GK G I+
Sbjct: 64 PTNAIFKAFAMIIDKL-EEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 265 LRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD----- 319
+R TGA ++V D LP +T+ + I+G P + ++ ++ ++P K
Sbjct: 123 IRESTGAQVQVA-GDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY 178
Query: 320 KP-PSSFPQAY-GGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMP 363
+P PSS P + GGQ+ +S + A P S N L G P
Sbjct: 179 RPKPSSSPVIFAGGQDRYSTGSDSASF-PHTTPSM-CLNPDLEGPP 222
Score = 133 (51.9 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAI---LQLQNKTSEF 474
+VK++++E+GA I++ + + ER+I A ++ + ID + + S
Sbjct: 35 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 92
Query: 475 SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 534
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E +
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTERAI 146
Query: 535 DIRGSSEHLI 544
I G + +I
Sbjct: 147 TIAGIPQSII 156
Score = 119 (46.9 bits), Expect = 0.00033, P = 0.00033
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P T+ R++ P+ + G +IGK G +K
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKE 122
Query: 153 LREETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+RE T A++ VA D +P S ER I I P I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 97 (39.2 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 26/105 (24%), Positives = 51/105 (48%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 263 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 317
Query: 306 YEVSTLLHQ----NPRKDKPPSSFPQAYGGQNFH-SPPAPMADMH 345
++ LL NP P + G N++ PP + + +
Sbjct: 318 EIITDLLRSVQAGNPGGPGGPGGRGRGRGQGNWNMGPPGGLQEFN 362
Score = 81 (33.6 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPT 182
P + V I+ P+ K G VIGK G +K L+E K+ + P + ++ + I P
Sbjct: 180 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 239
Query: 183 KIAKTQ 188
K+ + +
Sbjct: 240 KVQQAK 245
Score = 70 (29.7 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 102 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 154
Score = 62 (26.9 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADI-RVVGARVKLQ-DPHPGSSECI--VDIRGSS 540
+VP+ K G I+G+G +V +R T I + GAR++LQ +P P + + IRG+
Sbjct: 364 IVPTGKTGLIIGKG-NV--SLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTP 420
Query: 541 EHL 543
+ +
Sbjct: 421 QQI 423
Score = 48 (22.0 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSIN 384
G P+T G GDQP+ +G ++
Sbjct: 546 GGPATTQTNGQGDQPNPAPAGQVD 569
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 105 (42.0 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 41/171 (23%), Positives = 80/171 (46%)
Query: 151 KSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETK-----KESMEP 205
K+ E QA++TV I S+E +II +A +++ A +K + +
Sbjct: 36 KTDEEYAQAQLTVR-AIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLT 94
Query: 206 HCAAQDALLKVHDRIIEEDLFG----GMASDDDNENSTITARLLVPNNMVGCLLGKRGDV 261
+ + K + + L G GM N N T +LL+ +N +G ++G++G
Sbjct: 95 ITGGCEGISKAYAVVARALLEGAPSMGMGGVVSN-NGTHPIKLLISHNQMGTIIGRQGLK 153
Query: 262 IQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
I+ ++ +G + V + LP +T+ +V++ G P +RA++E+ L
Sbjct: 154 IKHIQDVSGVRM-VAQKEMLP---QSTERVVEVQGTPEGIQRAVWEICKCL 200
Score = 103 (41.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G + D+N T + +P +MVGC++G+ G I +R +GA I + A P
Sbjct: 276 GPPTHDENGEEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKA----PHDET 331
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+ M I G + AL+ LL++N +K
Sbjct: 332 GERMFTIMGSAKANETALF----LLYENLEAEK 360
Score = 88 (36.0 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 126 ADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIA 185
A R + S++ G +IGK G V LR+ET K V+ + G +RV+ I I+
Sbjct: 44 AQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEGIS 103
Query: 186 K 186
K
Sbjct: 104 K 104
Score = 85 (35.0 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T + +P+ VGCI+G+ G I+E+R+ + A I + A PH + E + I GS+
Sbjct: 289 TQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKA------PHDETGERMFTIMGSA 342
Query: 541 E 541
+
Sbjct: 343 K 343
Score = 64 (27.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSPTKIAK 186
++L ++G +IG+ G +K +++ + ++ + +P S ERV+ + +P I +
Sbjct: 135 KLLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQKEMLPQSTERVVEVQGTPEGIQR 191
>WB|WBGene00019692 [details] [associations]
symbol:M01A10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0006898 GO:GO:0003723 eggNOG:NOG300923
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:FO081508 RefSeq:NP_491627.2 ProteinModelPortal:P91393
SMR:P91393 STRING:P91393 PaxDb:P91393 EnsemblMetazoa:M01A10.1
GeneID:187350 KEGG:cel:CELE_M01A10.1 UCSC:M01A10.1 CTD:187350
WormBase:M01A10.1 HOGENOM:HOG000018892 InParanoid:P91393
OMA:KARIMET NextBio:934978 Uniprot:P91393
Length = 586
Score = 102 (41.0 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 55/249 (22%), Positives = 95/249 (38%)
Query: 384 NSCPPGQMGEVS--AEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSD 441
+ CPP M S A S+++ N+K++ ET I P D
Sbjct: 221 DECPPAGMAGNSPVAAMSLQVKVPRSTVGAIMGLQGSNIKKISNETETKIQF--MPDDDP 278
Query: 442 ERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHV 501
+ + R G N + ++ SE + +L+P+SK G ++G+GG
Sbjct: 279 KLMERTLVVIGNKNKVYVCARLLQKIVEANSENANTPISLFYMLIPASKCGLVIGRGGET 338
Query: 502 INEMRRRTQADIRVVGARVKL-QDPHPGSSECIVDIRGS------SEHLISAH-GTYQSF 553
I ++ + + GA ++ +DP + E IRGS ++HLI G
Sbjct: 339 IRQINKES-------GAYCEMSRDPSISAIEKQFVIRGSETQVEHAKHLIRVKVGDIPPN 391
Query: 554 MTSGQSMKVQPSSYQNINPXXXXXXXXXXXXXXYQN-MNTQQSPYHRV-N----AQQSPY 607
+ QP + + NP +QN ++ Q H+ N + + Y
Sbjct: 392 TPYINTRAAQPLQFSHQNPTAIDSWRAQPFTTQHQNSLSLPQPQAHQFPNLMAYSARLGY 451
Query: 608 QNINPQQSS 616
Q+ PQ +S
Sbjct: 452 QSHPPQHNS 460
Score = 94 (38.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 36/179 (20%), Positives = 83/179 (46%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDS 194
P +G VIG+ G ++++ +++ ++ + + R + IY I + ++
Sbjct: 59 PEESVGLVIGRNGVEIQAISQKSGCRVQIVAEPSTTGYRSVDIYGISENIEVAKKLINEV 118
Query: 195 AAETKKESMEP-HCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGC 253
A +K S EP C+ F + + ++ S +T + +P N G
Sbjct: 119 VARGRKLSQEPLPCSVPQ--------------FQPIPAVSNS--SKVTIIIPIPANKCGA 162
Query: 254 LLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312
++GK+G+ +++LRS T + ++ + + ++ + +QI+G+P + A V+ +L
Sbjct: 163 IIGKKGEQMRKLRSWTNCDFILIQENNIA----DSVKPLQITGQPKEVEHAKALVADIL 217
Score = 67 (28.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVL 276
D + I A + +P VG ++G+ G IQ + ++G ++++
Sbjct: 46 DTSTTVIKASVSIPEESVGLVIGRNGVEIQAISQKSGCRVQIV 88
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 96 (38.9 bits), Expect = 7.9e-07, Sum P(3) = 7.9e-07
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRAL 305
+P VG ++G+ G++I++++++ G I+ P D P D + QI+G P+ + A
Sbjct: 239 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-----DRIAQITGPPDRCQHAA 293
Query: 306 YEVSTLLHQNPRKDKPPSSFPQAYG---GQ-NFH-SPPAPMADMH 345
E+ T L ++ + P P G GQ N++ PP + + +
Sbjct: 294 -EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFN 337
Score = 96 (38.9 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 222 EEDLFGGMASD-DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-AD 279
+ D FG + S +T VP+ MVG ++G+ G+ I R++ E+G I++ P +
Sbjct: 42 QNDSFGTQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG 101
Query: 280 RLPP--CAMN-TDEMVQ 293
LP C + T E VQ
Sbjct: 102 GLPERSCMLTGTPESVQ 118
Score = 72 (30.4 bits), Expect = 7.9e-07, Sum P(3) = 7.9e-07
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
+VP+ K G I+G+GG I + +++ GAR++LQ +P P + + IRG+ +
Sbjct: 339 IVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTPQ 391
Query: 542 HL 543
+
Sbjct: 392 QI 393
Score = 70 (29.7 bits), Expect = 7.9e-07, Sum P(3) = 7.9e-07
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 184
Y++ P +G +IG+ G + +++E+ KI +A G ER ++ +P +
Sbjct: 65 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 117
Score = 51 (23.0 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 132 ILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE--ERVIIIYSSPTKIAKTQ 188
I+ P+ K G++GK G + + E K+ + P + ++ + I P K+ + +
Sbjct: 148 IMIPASK-AGLVGKGGETINNSEERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAK 205
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 146 (56.5 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 47/199 (23%), Positives = 93/199 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 112
Query: 188 QNKDDDSAAETKKE--SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA--- 242
+ E + EP Q DRI ++ L + + + +T
Sbjct: 113 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI-KQTLPSSPTTTKSSPSDPMTTSRA 171
Query: 243 ---RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKP 298
+++VPN+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P
Sbjct: 172 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQERVVTVSGEP 227
Query: 299 NVAKRALYEVSTLLHQNPR 317
++A+ + + ++P+
Sbjct: 228 EQNRKAVELIIQKIQEDPQ 246
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 146 (56.5 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 47/199 (23%), Positives = 93/199 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 112
Query: 188 QNKDDDSAAETKKE--SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA--- 242
+ E + EP Q DRI ++ L + + + +T
Sbjct: 113 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI-KQTLPSSPTTTKSSPSDPMTTSRA 171
Query: 243 ---RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKP 298
+++VPN+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P
Sbjct: 172 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQERVVTVSGEP 227
Query: 299 NVAKRALYEVSTLLHQNPR 317
++A+ + + ++P+
Sbjct: 228 EQNRKAVELIIQKIQEDPQ 246
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 47/199 (23%), Positives = 93/199 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 112
Query: 188 QNKDDDSAAETKKE--SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA--- 242
+ E + EP Q DRI ++ L + + + +T
Sbjct: 113 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI-KQTLPSSPTTTKSSPSDPMTTSRA 171
Query: 243 ---RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKP 298
+++VPN+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P
Sbjct: 172 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQERVVTVSGEP 227
Query: 299 NVAKRALYEVSTLLHQNPR 317
++A+ + + ++P+
Sbjct: 228 EQNRKAVELIIQKIQEDPQ 246
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 47/199 (23%), Positives = 93/199 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 112
Query: 188 QNKDDDSAAETKKE--SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA--- 242
+ E + EP Q DRI ++ L + + + +T
Sbjct: 113 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI-KQTLPSSPTTTKSSPSDPMTTSRA 171
Query: 243 ---RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKP 298
+++VPN+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P
Sbjct: 172 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQERVVTVSGEP 227
Query: 299 NVAKRALYEVSTLLHQNPR 317
++A+ + + ++P+
Sbjct: 228 EQNRKAVELIIQKIQEDPQ 246
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 101 (40.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 28/112 (25%), Positives = 57/112 (50%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ +D + + + VP VG ++G+ G++I+++++
Sbjct: 211 QQAREMVLEIIREKDQADFRGVRNDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQN 270
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ G I+ P D + P + + Q+ G P+ + A + +S L+ +D
Sbjct: 271 DAGVRIQFKPDDGISP-----ERVAQVMGLPDRCQHAAHIISELILTAQERD 317
Score = 93 (37.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D NSTI +L+P + VG ++GK G+ I++L+ TG + ++ +P A
Sbjct: 142 GFHNDVDG-NSTIQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGA-- 197
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
D+ ++I+G ++A V ++ + + D
Sbjct: 198 -DKPLRITGDAFKVQQAREMVLEIIREKDQAD 228
Score = 88 (36.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIY 178
GNS T+ IL P+ K+G VIGK G +K L+E T K I + D +P ++ + I
Sbjct: 149 GNS----TIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRIT 204
Query: 179 SSPTKIAKTQ 188
K+ + +
Sbjct: 205 GDAFKVQQAR 214
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 74 PDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTPESIEQAK 127
Score = 67 (28.6 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 45/187 (24%), Positives = 74/187 (39%)
Query: 369 GGYGDQPSRMGSGSIN-SCPPGQMGEV---SAEFSMKILCSAXXXXXXXXXXXFNVKQLQ 424
G D SRMG GSI S P +G V + E KI A + +++
Sbjct: 231 GVRNDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVA 290
Query: 425 QETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRL 484
Q G + A E ++ A +G + + + S + G
Sbjct: 291 QVMGLPDRCQHAAHIISELILTAQERDGFGS--LAVARGRGRGRGDWSVGTPGGMQEITY 348
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
VP+ K G ++G+GG I + +++ GA V+LQ +P P + I IRG +
Sbjct: 349 TVPADKCGLVIGKGGENIKSINQQS-------GAHVELQRNPPPNTDPGVRIFTIRGVPQ 401
Query: 542 HL-ISAH 547
+ ++ H
Sbjct: 402 QIELARH 408
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 97 (39.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 41/159 (25%), Positives = 70/159 (44%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F- 474
++KQL + GASI + AP + + +R G P +Q A ++ K E F
Sbjct: 431 HIKQLSRFAGASIKI--APAEGPDAKLRMVIITG--PPEAQ-FKAQGRIYGKLKEENFFG 485
Query: 475 -SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
E+ + + VPS G ++G+GG +NE++ T A+ VV R + D + + +
Sbjct: 486 PKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAE--VVVPRDQTPDEN---DQVV 540
Query: 534 VDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNINP 572
V I G A Q + + + Q + Q+ P
Sbjct: 541 VKITGHFYACQLAQRKIQEILAQVRRQQQQQKTLQSGQP 579
Score = 96 (38.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 126 ADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
+D R+L P++ +G +IGK G ++++ ++TQ+KI + G+ E+ I I+S+P
Sbjct: 195 SDVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTP 251
Score = 93 (37.8 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
+++ ++ EE+ FG E + A + VP+ G ++GK G + L++ T A +
Sbjct: 473 RIYGKLKEENFFG------PKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV- 525
Query: 275 VLPADRLPPCAMNTDEMVQISGK---PNVAKRALYEVSTLLHQNPRKDKP-PSSFPQ 327
V+P D+ P N +V+I+G +A+R + E+ + + ++ K S PQ
Sbjct: 526 VVPRDQTPD--ENDQVVVKITGHFYACQLAQRKIQEILAQVRRQQQQQKTLQSGQPQ 580
Score = 88 (36.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 39/181 (21%), Positives = 72/181 (39%)
Query: 145 KAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT--KIAK-TQNKDDDSAAETKKE 201
+ G+ + R++ Q+ + + +P II T I K TQ+K D E
Sbjct: 181 RQGSPSATTRQKPQSDVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGA 240
Query: 202 SMEP---HCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKR 258
+ +P H + +II E + + D I ++L NN VG L+GK
Sbjct: 241 AEKPITIHSTPEGCSTAC--KIIMEIM--QKEAQDTKFTEEIPLKILAHNNFVGRLIGKE 296
Query: 259 GDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
G ++++ +T I + P L N + + + G +A E+ + ++
Sbjct: 297 GRNLKKIEQDTDTKITISPLQDLT--LYNPERTITVKGSIETCAKAEEEIMKKIRESYEN 354
Query: 319 D 319
D
Sbjct: 355 D 355
Score = 88 (36.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 120 FGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTI-PGSEERVIIIY 178
FG ++TV+ + P+ +G +IGK G +K L A I +A P ++ R++II
Sbjct: 403 FGQQPESETVH-LFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIIT 461
Query: 179 SSPTKIAKTQNK 190
P K Q +
Sbjct: 462 GPPEAQFKAQGR 473
Score = 87 (35.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +P VG ++GK+G I++L GA+I++ PA+ P + MV I+G P
Sbjct: 411 TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEG-PDAKLR---MVIITGPPEA 466
Query: 301 AKRA 304
+A
Sbjct: 467 QFKA 470
Score = 78 (32.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ D + ER I + S AK
Sbjct: 281 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKA 340
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVH 217
+ + + +ES E AA + L+ H
Sbjct: 341 E----EEIMKKIRESYENDIAAMN--LQAH 364
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 101 (40.6 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 28/112 (25%), Positives = 57/112 (50%)
Query: 210 QDALLKVHDRIIEEDL--FGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRS 267
Q A V + I E+D F G+ +D + + + VP VG ++G+ G++I+++++
Sbjct: 240 QQAREMVLEIIREKDQADFRGVRNDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQN 299
Query: 268 ETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
+ G I+ P D + P + + Q+ G P+ + A + +S L+ +D
Sbjct: 300 DAGVRIQFKPDDGISP-----ERVAQVMGLPDRCQHAAHIISELILTAQERD 346
Score = 93 (37.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G +D D NSTI +L+P + VG ++GK G+ I++L+ TG + ++ +P A
Sbjct: 171 GFHNDVDG-NSTIQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGA-- 226
Query: 288 TDEMVQISGKPNVAKRALYEVSTLLHQNPRKD 319
D+ ++I+G ++A V ++ + + D
Sbjct: 227 -DKPLRITGDAFKVQQAREMVLEIIREKDQAD 257
Score = 88 (36.0 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 121 GNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVAD-TIPGSEERVIIIY 178
GNS T+ IL P+ K+G VIGK G +K L+E T K I + D +P ++ + I
Sbjct: 178 GNS----TIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRIT 233
Query: 179 SSPTKIAKTQ 188
K+ + +
Sbjct: 234 GDAFKVQQAR 243
Score = 73 (30.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
P + +G +IG+ G + ++ E+ KI +A G ER ++ +P I + +
Sbjct: 103 PDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTPESIEQAK 156
Score = 67 (28.6 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 45/187 (24%), Positives = 74/187 (39%)
Query: 369 GGYGDQPSRMGSGSIN-SCPPGQMGEV---SAEFSMKILCSAXXXXXXXXXXXFNVKQLQ 424
G D SRMG GSI S P +G V + E KI A + +++
Sbjct: 260 GVRNDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVA 319
Query: 425 QETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRL 484
Q G + A E ++ A +G + + + S + G
Sbjct: 320 QVMGLPDRCQHAAHIISELILTAQERDGFGS--LAVARGRGRGRGDWSVGTPGGMQEITY 377
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ-DPHPGSSEC--IVDIRGSSE 541
VP+ K G ++G+GG I + +++ GA V+LQ +P P + I IRG +
Sbjct: 378 TVPADKCGLVIGKGGENIKSINQQS-------GAHVELQRNPPPNTDPGVRIFTIRGVPQ 430
Query: 542 HL-ISAH 547
+ ++ H
Sbjct: 431 QIELARH 437
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 97 (39.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/83 (24%), Positives = 47/83 (56%)
Query: 100 RKGVVGIKKGNWSNSSREQSFGNSQPA-DTV-YRILCPSRKIGGVIGKAGNIVKSLREET 157
++GV + + ++++ FG + D + +IL PS +G +IGK G +++L+ +
Sbjct: 12 QQGVKRTQDASDGPANKKAHFGGEEEGGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDN 71
Query: 158 QAKITVA---DTIPGSEERVIII 177
++ ++ +T PG+ ER+ ++
Sbjct: 72 NCRVQMSKNSETYPGTSERICLV 94
Score = 91 (37.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 39/164 (23%), Positives = 66/164 (40%)
Query: 216 VHDRIIEE--DLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANI 273
+ D+I E+ D G A D N + ++++PN G ++GK G I+ +R + G I
Sbjct: 108 IQDKIREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQI 167
Query: 274 RVLPADRLPPCAMNTDEMVQI-----SGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQA 328
+V P + + +V + S A R L +V++ H +K F +
Sbjct: 168 QVYPKAGSVEAKTSLERVVTVAHDEASALLQAASRVLEKVASDPHHASEINK--EDFGKG 225
Query: 329 YGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYG 372
G + + P G NSS +P+ GG G
Sbjct: 226 -SGPSGSANSGPSGGGGGGGGGGQSNNNSSFSSVPAFNGGGGGG 268
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 97 (39.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/83 (24%), Positives = 47/83 (56%)
Query: 100 RKGVVGIKKGNWSNSSREQSFGNSQPA-DTV-YRILCPSRKIGGVIGKAGNIVKSLREET 157
++GV + + ++++ FG + D + +IL PS +G +IGK G +++L+ +
Sbjct: 12 QQGVKRTQDASDGPANKKAHFGGEEEGGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDN 71
Query: 158 QAKITVA---DTIPGSEERVIII 177
++ ++ +T PG+ ER+ ++
Sbjct: 72 NCRVQMSKNSETYPGTSERICLV 94
Score = 91 (37.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 39/164 (23%), Positives = 66/164 (40%)
Query: 216 VHDRIIEE--DLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANI 273
+ D+I E+ D G A D N + ++++PN G ++GK G I+ +R + G I
Sbjct: 108 IQDKIREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQI 167
Query: 274 RVLPADRLPPCAMNTDEMVQI-----SGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQA 328
+V P + + +V + S A R L +V++ H +K F +
Sbjct: 168 QVYPKAGSVEAKTSLERVVTVAHDEASALLQAASRVLEKVASDPHHASEINK--EDFGKG 225
Query: 329 YGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYG 372
G + + P G NSS +P+ GG G
Sbjct: 226 -SGPSGSANSGPSGGGGGGGGGGQSNNNSSFSSVPAFNGGGGGG 268
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 99 (39.9 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 34/138 (24%), Positives = 59/138 (42%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + LVPN+++GC++G++G I +R +GA+I++ ++ + V
Sbjct: 76 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAG---ERHVT 130
Query: 294 ISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG--NS 350
I+G P A Y ++ L PSS P SPP P G +
Sbjct: 131 ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP--FSPPLTALPTAPPGLLGT 188
Query: 351 SWPARNSSLHGMPSTPWM 368
+ S+ G+ P++
Sbjct: 189 PYAISLSNFIGLKPMPFL 206
Score = 82 (33.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 476 EKGTITT--RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ GT T+ LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E
Sbjct: 76 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERH 128
Query: 534 VDIRGS 539
V I GS
Sbjct: 129 VTITGS 134
Score = 81 (33.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 121 GN-SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVI 175
GN S+P T+ R++ P+ + G +IGKAG +K +RE T+ + + +P + V+
Sbjct: 18 GNVSRPPVTL-RLVIPASQCGSLIGKAGTKIKEIREVTKLQQLSSHAVPFATPSVV 72
Score = 78 (32.5 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSET 269
++EDL A+ + +T RL++P + G L+GK G I+ +R T
Sbjct: 6 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVT 54
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 97/448 (21%), Positives = 185/448 (41%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT----IEA 107
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVP 247
N AE +E M + A + + I++ N + +++VP
Sbjct: 108 LNAVHGFIAEKIRE-MPQNVAKTEPV-----SILQPQT-------TVNPDRIKQVKIIVP 154
Query: 248 NNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKPNVAKRALY 306
N+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P ++A+
Sbjct: 155 NSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQERVVTVSGEPEQNRKAVE 210
Query: 307 EVSTLLHQNPRKDKPPS-SFPQAYGG-QNFH---SPPAPMADMHPLGNSSWPAR-NSSLH 360
+ + ++P+ + S+ G N + SP A A++ P ++ +++L
Sbjct: 211 LIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLLGHANLA 270
Query: 361 GMPSTPW-MGGYGDQPSRMGSGSINSCPP-----GQMG-EVSAEFSMKILCSAXXXXXXX 413
G+ + P + G+ + ++N+ +G +S + L +A
Sbjct: 271 GVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPA 330
Query: 414 XXXXFNVKQLQQETGASIHVEDAPTDS---DERVIRASAFEGLWNPRSQ-TIDAILQLQN 469
+ E AS + +A G + S AIL +
Sbjct: 331 AAAANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEK 390
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGS 529
T K + + VP + VG ILG+GG + E + T A I++ K + PG+
Sbjct: 391 STD--GSKDVV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFVPGT 442
Query: 530 SECIVDIRGS------SEHLISAHGTYQ 551
V I G+ +++LI+ TY+
Sbjct: 443 RNRKVTITGTPAATQAAQYLITQRITYE 470
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 90 (36.7 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 228 GMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMN 287
G+ + D T T+ L PN+++GC++G++G I + +GA I++ + +
Sbjct: 271 GIEAGSDASAQT-TSHELTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEG------S 323
Query: 288 TDEMVQISGKPNVAKRALYEVSTLL 312
TD V I+G A Y ++ L
Sbjct: 324 TDRQVTITGPAASISLAQYLINVRL 348
Score = 83 (34.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 116 REQSFGNSQPAD--TVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEER 173
R +S NS A R++ P + G +IGK +K + E T D +P S E+
Sbjct: 92 RSRSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGETTGPVQVAGDMLPNSSEQ 151
Query: 174 VIIIYSSPTKIAKTQNK 190
I I S P I + N+
Sbjct: 152 AIPIASIPQSIIECVNQ 168
Score = 78 (32.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T+ L P+ +GCI+G+ G INE+ + + GA++K+ +P GS++ V I G
Sbjct: 283 TSHELTPNDLIGCIIGRQGAKINEIHQMS-------GAQIKIANPE-GSTDRQVTITG 332
Score = 74 (31.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK REE+ A + +++ ER+I + + PT
Sbjct: 29 RLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEG--NCPERIITL-AGPT 76
Score = 74 (31.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 31/125 (24%), Positives = 59/125 (47%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADR 280
+EED M ++ + +T+RL+VP++ G L+GK I+ + TG ++V D
Sbjct: 88 LEEDRSRSM-TNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGETTGP-VQVA-GDM 144
Query: 281 LPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN---------PRKDKPPSSFPQAYGG 331
LP ++++ + I+ P + ++ ++ + P KP SS GG
Sbjct: 145 LPN---SSEQAIPIASIPQSIIECVNQIGVVMLETQHSPKGVTIPYLPKPSSSIVIFAGG 201
Query: 332 QNFHS 336
Q+ +S
Sbjct: 202 QDRYS 206
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 99 (39.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 59/261 (22%), Positives = 106/261 (40%)
Query: 262 IQRLRSETGANIRVLPADRLPPCAMNT-DEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+ RL + G N++ + D ++ ++ + + + + E + K K
Sbjct: 297 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKAEEEVMK-K 355
Query: 321 PPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGS 380
S+ N + P +++ LG +P +S GMP P G P+ S
Sbjct: 356 IRESYENDIAAMNLQAHLIPGLNLNALG--LFPPSSS---GMP--PPSAGVSS-PTTSAS 407
Query: 381 GSINSCPP-GQMGEVSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTD 439
PP GQ E +E ++ + A ++KQL + GASI + AP +
Sbjct: 408 -----YPPFGQQPE--SE-TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKI--APAE 457
Query: 440 SDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE---F--SEKGTITTRLLVPSSKVGCI 494
+ +R G P +Q A ++ K E F E+ + + VPS G +
Sbjct: 458 GPDAKLRMVIITG--PPEAQ-FKAQGRIYGKLKEENFFGPKEEVKLEAHIKVPSYAAGRV 514
Query: 495 LGQGGHVINEMRRRTQADIRV 515
+G+GG +NE++ T A++ V
Sbjct: 515 IGKGGKTVNELQNLTSAEVVV 535
Score = 93 (37.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 28/114 (24%), Positives = 56/114 (49%)
Query: 215 KVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIR 274
+++ ++ EE+ FG E + A + VP+ G ++GK G + L++ T A +
Sbjct: 481 RIYGKLKEENFFG------PKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV- 533
Query: 275 VLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQA 328
V+P D+ P N +V+I+G ++ A ++ +L Q R+ + Q+
Sbjct: 534 VVPRDQTPD--ENDQVVVKITGHFYASQLAQRKIQEILAQVRRQQQQQQKTAQS 585
Score = 92 (37.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITV-ADTIPGSEERVIIIYSSP 181
R+L P++ +G +IGK G ++++ ++TQ+KI + G+ E+ I I+S+P
Sbjct: 208 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTP 259
Score = 89 (36.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 112 SNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTI-PGS 170
+ S+ FG ++TV+ + P+ +G +IGK G +K L A I +A P +
Sbjct: 403 TTSASYPPFGQQPESETVH-LFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDA 461
Query: 171 EERVIIIYSSPTKIAKTQNK 190
+ R++II P K Q +
Sbjct: 462 KLRMVIITGPPEAQFKAQGR 481
Score = 87 (35.7 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 300
T L +P VG ++GK+G I++L GA+I++ PA+ P + MV I+G P
Sbjct: 419 TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEG-PDAKLR---MVIITGPPEA 474
Query: 301 AKRA 304
+A
Sbjct: 475 QFKA 478
Score = 79 (32.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
+IL + +G +IGK G +K + ++T KIT++ D + ER I + S AK
Sbjct: 289 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKA 348
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVH 217
+ + + +ES E AA + L+ H
Sbjct: 349 E----EEVMKKIRESYENDIAAMN--LQAH 372
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 100 (40.3 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 110 NWSNSSREQSFGNSQPADTV----YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVAD 165
N +SS + N + D R+ CP ++ ++G+ G + LRE+ +ITV++
Sbjct: 138 NTGSSSSSKPVSNHRDRDDPTFIQLRMYCPVKEASTIVGRKGETINHLREKANVRITVSE 197
Query: 166 TIPGSEERVIIIYSSPTKIAK 186
+ G ER++ + +A+
Sbjct: 198 NLKGVPERIVAVKGPAENVAR 218
Score = 82 (33.9 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 28/116 (24%), Positives = 62/116 (53%)
Query: 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 302
+LL+P+ M+G ++GK+G + + + A ++ + LP +TD ++ + G +
Sbjct: 246 KLLIPHPMIGFIIGKQGLKFREIEENSAAKLKAAE-NALP---YSTDRVLSVMGVGDAIH 301
Query: 303 RALYEVSTLL--HQNP-RKDKP----PSSF-P--QAYGGQNFHSPPAPMADMHPLG 348
A+Y ++ ++ H+ +K K P+++ P Q+ GG+ PP+ + +P+G
Sbjct: 302 IAVYYIAQVMLEHKEVLKKHKVVLYNPANYQPTDQSLGGRQ-RQPPSNSYN-NPMG 355
Score = 65 (27.9 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 32/163 (19%), Positives = 67/163 (41%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
+LL+P +G I+G+ G E+ + A ++ ++ P S++ ++ + G +
Sbjct: 246 KLLIPHPMIGFIIGKQGLKFREIEENSAAKLKAA------ENALPYSTDRVLSVMGVGDA 299
Query: 543 L-ISAHGTYQSFMTSGQSMK------VQPSSYQNINPXXXXXXXXXXXXXXYQNMNTQQS 595
+ I+ + Q + + +K P++YQ + M Q
Sbjct: 300 IHIAVYYIAQVMLEHKEVLKKHKVVLYNPANYQPTDQSLGGRQRQPPSNSYNNPMGYQAK 359
Query: 596 --PYHRV-NAQQSPYQ-NINPQQSSYPMHTHQGAGTNPH-ITP 633
P+ + QQSPY ++ Q + P H +NP+ ++P
Sbjct: 360 LPPFSKPPQHQQSPYNFSMMFQPAVQPQHFGSPVTSNPNAVSP 402
Score = 46 (21.3 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSE-H 542
+ V +S +G ++G+ G+ I +R + VK++ P G S + +G +
Sbjct: 446 VFVANSSIGSVIGKRGNNIKHIRETSACTY------VKIE-PDKGQSMMLGGGKGMTNIR 498
Query: 543 LISAHGTYQSFMTS 556
++ GT S T+
Sbjct: 499 KLTLTGTLNSIQTA 512
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 98 (39.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + L +PN+++GC++G++G I +R +GA I+ A+ P +TD V
Sbjct: 239 DESAQTTSHELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKT--AN---PVEGSTDRQVT 293
Query: 294 ISGKPNVAKRALYEVSTLL 312
I+G A Y ++ L
Sbjct: 294 ITGPAASISLAQYLINARL 312
Score = 85 (35.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K +P GS++ V I G
Sbjct: 244 TTSHELTLPNDLIGCIIGRQGAKINEIRQMS-------GAQIKTANPVEGSTDRQVTITG 296
Score = 83 (34.3 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 31/86 (36%), Positives = 43/86 (50%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P TV P+ + G +IGK G I K
Sbjct: 66 PTNAIFKAFAMIIDKPEEDISSSMTNSTAASRPPVTVV----PASQCGSLIGK-GTI-KE 119
Query: 153 LREETQAKITVA-DTIPGSEERVIII 177
+RE T A++ A + +P S ER I I
Sbjct: 120 IRESTGAQVQAAGNMLPNSTERAITI 145
Score = 65 (27.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
R+L +++G +I K+ VK L+E++ A+I +++ ER+I + I K
Sbjct: 20 RLLMHGKEVGSIIRKSRESVKKLQEKS-ARINISEG--NCPERIITLAGPTNAIFKAFAM 76
Query: 191 DDDSAAETKKESMEPHCAA 209
D E SM AA
Sbjct: 77 IIDKPEEDISSSMTNSTAA 95
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 139 (54.0 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 47/202 (23%), Positives = 93/202 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA------DTIPGSEERVIIIYSSPTKI 184
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEAL 112
Query: 185 AKTQNKDDDSAAETKKE--SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA 242
+ E + EP Q DRI ++ L + + + +T
Sbjct: 113 NAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI-KQTLPSSPTTTKSSPSDPMTT 171
Query: 243 ------RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQIS 295
+++VPN+ G ++GK G ++ + ++GA +++ P +N E +V +S
Sbjct: 172 SRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQERVVTVS 227
Query: 296 GKPNVAKRALYEVSTLLHQNPR 317
G+P ++A+ + + ++P+
Sbjct: 228 GEPEQNRKAVELIIQKIQEDPQ 249
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 122 (48.0 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 38/156 (24%), Positives = 72/156 (46%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 16 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 75
Query: 188 QNKDDDSAAETKKE--SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA--- 242
+ E + EP Q DRI ++ L + + + +T
Sbjct: 76 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI-KQTLPSSPTTTKSSPSDPMTTSRA 134
Query: 243 ---RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+++VPN+ G ++GK G ++ + ++GA +++
Sbjct: 135 NQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 170
Score = 109 (43.4 bits), Expect = 0.00070, P = 0.00070
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 476 EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVD 535
E G ++L+PS G I+G+GG I ++++ T A I++ K +D +PG++E +
Sbjct: 9 EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS----KSKDFYPGTTERVCL 64
Query: 536 IRGSSEHLISAHG 548
I+G+ E L + HG
Sbjct: 65 IQGTVEALNAVHG 77
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 137 (53.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 96/448 (21%), Positives = 184/448 (41%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKT 187
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT----IEA 107
Query: 188 QNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVP 247
N AE +E M + A + + I++ N + +++VP
Sbjct: 108 LNAVHGFIAEKIRE-MPQNVAKTEPV-----SILQPQT-------TVNPDRIKQVKIIVP 154
Query: 248 NNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDE-MVQISGKPNVAKRALY 306
N+ G ++GK G ++ + ++GA +++ P +N E +V +SG+P ++A+
Sbjct: 155 NSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQERVVTVSGEPEQNRKAVE 210
Query: 307 EVSTLLHQNPRKDKPPS-SFPQAYGGQNFHSP---P-APMADMHPLGNSSWPAR-NSSLH 360
+ + ++P+ + S+ G +P P A A++ P ++ +++L
Sbjct: 211 LIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGFPYANTAEVLPTAAAAAGLLGHANLA 270
Query: 361 GMPSTPW-MGGYGDQPSRMGSGSINSCPP-----GQMG-EVSAEFSMKILCSAXXXXXXX 413
G+ + P + G+ + ++N+ +G +S + L +A
Sbjct: 271 GVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPA 330
Query: 414 XXXXFNVKQLQQETGASIHVEDAPTDS---DERVIRASAFEGLWNPRSQ-TIDAILQLQN 469
+ E AS + +A G + S AIL +
Sbjct: 331 AAAANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEK 390
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGS 529
T K + + VP + VG ILG+GG + E + T A I++ K + PG+
Sbjct: 391 STD--GSKDVV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQIS----KKGEFVPGT 442
Query: 530 SECIVDIRGS------SEHLISAHGTYQ 551
V I G+ +++LI+ TY+
Sbjct: 443 RNRKVTITGTPAATQAAQYLITQRITYE 470
>UNIPROTKB|I3L2B5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:I3L2B5 SMR:I3L2B5
Ensembl:ENST00000574031 Bgee:I3L2B5 Uniprot:I3L2B5
Length = 152
Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGS 529
K + E G ++L+PS G I+G+GG I ++++ T A I++ K +D +PG+
Sbjct: 40 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS----KSKDFYPGT 95
Query: 530 SECIVDIRGSSEHLISAHG 548
+E + I+G+ E L + HG
Sbjct: 96 TERVCLIQGTVEALNAVHG 114
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 99 (39.9 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 34/138 (24%), Positives = 59/138 (42%)
Query: 234 DNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQ 293
D T + LVPN+++GC++G++G I +R +GA+I++ ++ + V
Sbjct: 257 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAG---ERHVT 311
Query: 294 ISGKPNVAKRALYEVSTLLHQ-NPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLG--NS 350
I+G P A Y ++ L PSS P SPP P G +
Sbjct: 312 ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP--FSPPLTALPTAPPGLLGT 369
Query: 351 SWPARNSSLHGMPSTPWM 368
+ S+ G+ P++
Sbjct: 370 PYAISLSNFIGLKPMPFL 387
Score = 82 (33.9 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 476 EKGTITT--RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECI 533
+ GT T+ LVP+ +GC++G+ G I+E+R+ + GA +K+ + G+ E
Sbjct: 257 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMS-------GAHIKIGNQAEGAGERH 309
Query: 534 VDIRGS 539
V I GS
Sbjct: 310 VTITGS 315
Score = 78 (32.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 221 IEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETG 270
++EDL A+ + +T RL++P + G L+GK G I+ +R G
Sbjct: 49 LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
Score = 71 (30.1 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 121 GN-SQPADTVYRILCPSRKIGGVIGKAGNIVKSLRE 155
GN S+P T+ R++ P+ + G +IGKAG +K +RE
Sbjct: 61 GNVSRPPVTL-RLVIPASQCGSLIGKAGTKIKEIRE 95
Score = 52 (23.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 269 TGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRK 318
TGA ++V D LP +T+ V +SG P+ + ++ ++ ++P K
Sbjct: 152 TGAQVQVA-GDLLPN---STERAVTVSGVPDAIILCVRQICAVILESPPK 197
Score = 47 (21.6 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 155 EETQAKITVA-DTIPGSEERVIIIYSSPTKI 184
+ T A++ VA D +P S ER + + P I
Sbjct: 150 QTTGAQVQVAGDLLPNSTERAVTVSGVPDAI 180
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 134 (52.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 77/349 (22%), Positives = 133/349 (38%)
Query: 233 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 292
D I ++L N++VG L+GK G ++++ +T I + L N + +
Sbjct: 272 DTKVTEDIPLKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLT--IYNPERTI 329
Query: 293 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADM--HPLGNS 350
+ G RA E+ L + D A Q+ P ++ + G S
Sbjct: 330 IVKGSIEACCRAEVEIMKKLREAYENDVA------AINQQSNLIPGLSLSALGIFSTGLS 383
Query: 351 SWPARNSSLHGMPSTPWMGGYGDQPSRMGS-GSINSCPP--GQMGEVSA--EFSMKILCS 405
P + G+P P GY G + PP G + +A + + +
Sbjct: 384 VLPPA-AGPRGIPPVP-PTGYNPFLGHSSQLGGLYGVPPASGISHQHTAPEQEVVYLFIP 441
Query: 406 AXXXXXXXXXXXFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAIL 465
++KQL + GASI + AP +S + R G + + I
Sbjct: 442 TQAVGAIIGKKGQHIKQLARFAGASIKI--APAESPDVTQRMVIITGPPEAQFKAQGRIF 499
Query: 466 QLQNKTSEFSEKGTIT--TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQ 523
+ + F+ K + T + VPSS G ++G+GG +NE++ T A++ V + Q
Sbjct: 500 GKLKEENFFTAKEEVKLETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVP----RDQ 555
Query: 524 DPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSGQSMKVQPSSYQNINP 572
P + E V I G H ++ + Q +K Q +Q P
Sbjct: 556 TPDE-NDEVFVKISG---HFFASQTAQRKIREIIQQVKQQEQKHQQGAP 600
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 125 (49.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 42/194 (21%), Positives = 84/194 (43%)
Query: 123 SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
+QP +R+L ++ +IG G+ + +R KI +++ +PG +R++ S
Sbjct: 40 AQPTIN-HRLLLSLKEAAKIIGTKGSTISRIRAANAVKIGISEKVPGCSDRIL---SCAG 95
Query: 183 KIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTIT- 241
+ N D K + E AA+ + + + + D+ + +
Sbjct: 96 NVINVANAIGDIVDVLNKRNPENEDAAEGEAEEHYYFHFLNHILPAPSKDEIRDLQQLED 155
Query: 242 ---ARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
RL+V N+ + ++GK G I+ L ++ G I V D LP + + +++I G P
Sbjct: 156 IGYVRLIVANSHISSIIGKAGATIKSLINKHGVKI-VASKDFLPA---SDERIIEIQGFP 211
Query: 299 NVAKRALYEVSTLL 312
L E+S ++
Sbjct: 212 GSITNVLIEISEII 225
Score = 49 (22.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 471 TSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
TS + T L +P VG I+G+G + I ++ T+ +I V
Sbjct: 251 TSPSTSSNT-RIELKIPELYVGAIIGRGMNRIKNLKTFTKTNIVV 294
>UNIPROTKB|D4A6P7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00951323
Ensembl:ENSRNOT00000066327 ArrayExpress:D4A6P7 Uniprot:D4A6P7
Length = 155
Score = 112 (44.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGS 529
K + E G ++L+PS G I+G+GG I ++++ T A I++ K +D +PG+
Sbjct: 39 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS----KSKDFYPGT 94
Query: 530 SECIVDIRGSSEHLISAHG 548
+E + I+G+ E L + HG
Sbjct: 95 TERVCLIQGTIEALNAVHG 113
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 87 (35.7 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNE-NSTITARL--LVPNNMVGCLLGKRGD 260
+P+ Q A V D + E D GG D NE S I + VP + VG ++G+ G+
Sbjct: 144 DPY-KVQQACEMVMDILRERDQ-GGFG--DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGE 199
Query: 261 VIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+I++++++ G I+ D P +++ I G P+ + A ++ LL Q+ R
Sbjct: 200 MIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPDRCEHAARIINDLL-QSLRSGP 253
Query: 321 P-PSSFP 326
P P P
Sbjct: 254 PGPPGGP 260
Score = 77 (32.2 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQN 189
YR+ P +G +IG+ G + +++++ K+ ++ G ER + + +P + K +
Sbjct: 5 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKM 62
Query: 190 KDDD 193
DD
Sbjct: 63 MLDD 66
Score = 77 (32.2 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVA 164
+ +G + N TV I+ P+ K G VIGK G +K L+E K I +
Sbjct: 68 VSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ 127
Query: 165 DTIPGSE-ERVIIIYSSPTKI 184
D + ++ + I P K+
Sbjct: 128 DGSQNTNVDKPLRIIGDPYKV 148
Score = 55 (24.4 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+P+ K G ++G+GG + + ++T A + +
Sbjct: 287 IPTHKCGLVIGRGGENVKAINQQTGAFVEI 316
Score = 55 (24.4 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 27/85 (31%), Positives = 35/85 (41%)
Query: 361 GMPSTPWMGGYGDQPSRMGSG--SINSCPPGQMGEVSAEFSMKI-LCSAXXXXXXXXXXX 417
G P P GG G P G G N PPG GE++ FS+ C
Sbjct: 252 GPPGPP--GGPGMPPGGRGRGRGQGNWGPPG--GEMT--FSIPTHKCGLVIGRGGE---- 301
Query: 418 FNVKQLQQETGASIHVE-DAPTDSD 441
NVK + Q+TGA + + P + D
Sbjct: 302 -NVKAINQQTGAFVEISRQLPPNGD 325
Score = 47 (21.6 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 21/85 (24%), Positives = 28/85 (32%)
Query: 316 PRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWP--ARNSSLHGMPSTPWMGGYG- 372
P PP + P A G PP + +P P ++ P+ W Y
Sbjct: 378 PFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPNKAAAAADPNAAWAAYYSH 437
Query: 373 --DQPSRM--GSGSINSCPPGQMGE 393
QP G + PP Q GE
Sbjct: 438 YYQQPPGPVPGPAPAPAAPPAQ-GE 461
Score = 45 (20.9 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 321 PPSSFPQAYGGQNFHSPPAPMADMHP 346
PP+ Q N H PP P + P
Sbjct: 556 PPTQQGQQQASGNCHPPPPPFSFQPP 581
>UNIPROTKB|Q7JPS0 [details] [associations]
symbol:Psi "PSI" species:7242 "Drosophila sp." [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IMP] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA;IMP] [GO:0005685 "U1 snRNP" evidence=IPI]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003729 GO:GO:0006397
GO:GO:0007283 GO:GO:0048025 GO:GO:0000381 InterPro:IPR015096
Pfam:PF09005 PDB:2BN5 PDBsum:2BN5 FlyBase:FBgn0014870 EMBL:S75665
PDB:2BN6 PDBsum:2BN6 ProteinModelPortal:Q7JPS0 SMR:Q7JPS0
InParanoid:Q7JPS0 EvolutionaryTrace:Q7JPS0 Uniprot:Q7JPS0
Length = 796
Score = 119 (46.9 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 42/148 (28%), Positives = 73/148 (49%)
Query: 132 ILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKD 191
I+ P K+G VIGK G+ +K L+E+T AK+ + P E +I P +I+ K
Sbjct: 216 IMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQE----LI--KPLRISGEAQK- 268
Query: 192 DDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGG--MASDD-DNENSTITARLLVPN 248
E K+ + A +DA + GG M ++ +N N + + VP
Sbjct: 269 ----IEHAKQMVLDLIAQKDAQGQQQGGRGGGGGGGGPGMGFNNFNNGNGGESTEVFVPK 324
Query: 249 NMVGCLLGKRGDVIQRLRSETGANIRVL 276
VG ++GK GD+I+++++E G ++ +
Sbjct: 325 IAVGVVIGKGGDMIRKIQTECGCKLQFI 352
Score = 60 (26.2 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 485 LVPSSKVGCILGQGGHVINEMRRRTQA 511
LVP+SK G ++G+GG I + +++ A
Sbjct: 432 LVPASKCGIVIGRGGETIKLINQQSGA 458
Score = 41 (19.5 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 590 MNTQQSPYHRVNAQQSPYQNINPQQSSYPMHTHQGAG 626
M QQ + P Q PQQ GAG
Sbjct: 612 MIEQQMKAKQAGGSSGPVQQQQPQQQQQSQQQTGGAG 648
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 116 (45.9 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 53/236 (22%), Positives = 96/236 (40%)
Query: 132 ILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVADTIPGSE-ERVIIIYSSPTKIAKTQN 189
++ P+ K G +IGK G +K L+E K I + D G ++ + I P K+ + +
Sbjct: 197 MVIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDASQGPNMDKPLRIIGDPYKVQQAR- 255
Query: 190 KDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNN 249
+ E +E P + ++ GG I + VP +
Sbjct: 256 ---EMVQEILRERDHPGFERNEYGSRMGGG-------GGGGGGGGGGGGGI--EVPVPRH 303
Query: 250 MVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVS 309
VG ++G+ G++I++++++ G I+ P D P D++ I G P+ + A ++
Sbjct: 304 SVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGP-----DKIAHIMGPPDRCEHAASIIN 358
Query: 310 TLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMA-DMHPLGNSSWPARNSSLHGMPS 364
LL Q+ R + P G PP P GN P + +P+
Sbjct: 359 ELL-QSIRVREEGGGGPPGPPGTGM--PPGGRGRGRGPGGNWGGPPGSEMTFSIPA 411
Score = 60 (26.2 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSEC-IVDIRGSSEHL 543
+P+ K G ++G+GG + + ++T A + + +R Q P G + IRGS + +
Sbjct: 409 IPAHKCGLVIGRGGENVKAINQQTGAFVEI--SR---QPPPNGDPNFKLFTIRGSPQQI 462
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 35/127 (27%), Positives = 61/127 (48%)
Query: 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNE-NSTITARL--LVPNNMVGCLLGKRGD 260
+P+ Q A V D + E D GG D NE S + + VP + VG ++G+ G+
Sbjct: 289 DPY-KVQQACEMVMDILRERDQ-GGFG--DRNEYGSRVGGGIDVPVPRHSVGVVIGRSGE 344
Query: 261 VIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+I++++++ G I+ D P +++ I G P+ + A ++ LL Q+ R
Sbjct: 345 MIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPDRCEHAARIINDLL-QSLRSGP 398
Query: 321 P-PSSFP 326
P P P
Sbjct: 399 PGPPGAP 405
Score = 77 (32.2 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQN 189
YR+ P +G +IG+ G + +++++ K+ ++ G ER + + +P + K +
Sbjct: 150 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKM 207
Query: 190 KDDD 193
DD
Sbjct: 208 MLDD 211
Score = 77 (32.2 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVA 164
+ +G + N TV I+ P+ K G VIGK G +K L+E K I +
Sbjct: 213 VSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ 272
Query: 165 DTIPGSE-ERVIIIYSSPTKI 184
D + ++ + I P K+
Sbjct: 273 DGSQNTNVDKPLRIIGDPYKV 293
Score = 56 (24.8 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
+P+ K G ++G+GG + + ++T A + + DP+ + V IRGS + +
Sbjct: 432 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPN---FKLFV-IRGSPQQI 485
Score = 54 (24.1 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 31/96 (32%), Positives = 39/96 (40%)
Query: 361 GMPSTPWM--GGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKI-LCSAXXXXXXXXXXX 417
G P P M GG G G G N PPG GE++ FS+ C
Sbjct: 400 GPPGAPGMPPGGRG-----RGRGQGNWGPPG--GEMT--FSIPTHKCGLVIGRGGE---- 446
Query: 418 FNVKQLQQETGASIHVE-DAPTDSDER----VIRAS 448
NVK + Q+TGA + + P + D VIR S
Sbjct: 447 -NVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGS 481
Score = 48 (22.0 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 23/89 (25%), Positives = 29/89 (32%)
Query: 313 HQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPAR-NSSLHGM--PSTPWMG 369
H P PP + P A G PP + +P P N + P+ W
Sbjct: 520 HPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPEWQPPAPHDPNKAAAAATDPNAAWAA 579
Query: 370 GYG---DQPSRM--GSGSINSCPPGQMGE 393
Y QP G + PP Q GE
Sbjct: 580 YYSHYYQQPPGPVPGPAPAPAAPPAQ-GE 607
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 87 (35.7 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 35/127 (27%), Positives = 61/127 (48%)
Query: 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNE-NSTITARL--LVPNNMVGCLLGKRGD 260
+P+ Q A V D + E D GG D NE S + + VP + VG ++G+ G+
Sbjct: 289 DPY-KVQQACEMVMDILRERDQ-GGFG--DRNEYGSRVGGGIDVPVPRHSVGVVIGRSGE 344
Query: 261 VIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+I++++++ G I+ D P +++ I G P+ + A ++ LL Q+ R
Sbjct: 345 MIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPDRCEHAARIINDLL-QSLRSGP 398
Query: 321 P-PSSFP 326
P P P
Sbjct: 399 PGPPGAP 405
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQN 189
YR+ P +G +IG+ G + +++++ K+ ++ G ER + + +P + K +
Sbjct: 150 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKM 207
Query: 190 KDDD 193
DD
Sbjct: 208 MLDD 211
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVA 164
+ +G + N TV I+ P+ K G VIGK G +K L+E K I +
Sbjct: 213 VSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ 272
Query: 165 DTIPGSE-ERVIIIYSSPTKI 184
D + ++ + I P K+
Sbjct: 273 DGSQNTNVDKPLRIIGDPYKV 293
Score = 56 (24.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHL 543
+P+ K G ++G+GG + + ++T A + + DP+ + V IRGS + +
Sbjct: 432 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPN---FKLFV-IRGSPQQI 485
Score = 54 (24.1 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 31/96 (32%), Positives = 39/96 (40%)
Query: 361 GMPSTPWM--GGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKI-LCSAXXXXXXXXXXX 417
G P P M GG G G G N PPG GE++ FS+ C
Sbjct: 400 GPPGAPGMPPGGRG-----RGRGQGNWGPPG--GEMT--FSIPTHKCGLVIGRGGE---- 446
Query: 418 FNVKQLQQETGASIHVE-DAPTDSDER----VIRAS 448
NVK + Q+TGA + + P + D VIR S
Sbjct: 447 -NVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGS 481
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 87 (35.7 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNE-NSTITARL--LVPNNMVGCLLGKRGD 260
+P+ Q A V D + E D GG D NE S I + VP + VG ++G+ G+
Sbjct: 249 DPY-KVQQACEMVMDILRERDQ-GGFG--DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGE 304
Query: 261 VIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+I++++++ G I+ D P +++ I G P+ + A ++ LL Q+ R
Sbjct: 305 MIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPDRCEHAARIINDLL-QSLRSGP 358
Query: 321 P-PSSFP 326
P P P
Sbjct: 359 PGPPGGP 365
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQN 189
YR+ P +G +IG+ G + +++++ K+ ++ G ER + + +P + K +
Sbjct: 110 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKM 167
Query: 190 KDDD 193
DD
Sbjct: 168 MLDD 171
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVA 164
+ +G + N TV I+ P+ K G VIGK G +K L+E K I +
Sbjct: 173 VSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ 232
Query: 165 DTIPGSE-ERVIIIYSSPTKI 184
D + ++ + I P K+
Sbjct: 233 DGSQNTNVDKPLRIIGDPYKV 253
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+P+ K G ++G+GG + + ++T A + +
Sbjct: 392 IPTHKCGLVIGRGGENVKAINQQTGAFVEI 421
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/85 (31%), Positives = 35/85 (41%)
Query: 361 GMPSTPWMGGYGDQPSRMGSG--SINSCPPGQMGEVSAEFSMKI-LCSAXXXXXXXXXXX 417
G P P GG G P G G N PPG GE++ FS+ C
Sbjct: 357 GPPGPP--GGPGMPPGGRGRGRGQGNWGPPG--GEMT--FSIPTHKCGLVIGRGGE---- 406
Query: 418 FNVKQLQQETGASIHVE-DAPTDSD 441
NVK + Q+TGA + + P + D
Sbjct: 407 -NVKAINQQTGAFVEISRQLPPNGD 430
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 87 (35.7 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNE-NSTITARL--LVPNNMVGCLLGKRGD 260
+P+ Q A V D + E D GG D NE S I + VP + VG ++G+ G+
Sbjct: 288 DPY-KVQQACEMVMDILRERDQ-GGFG--DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGE 343
Query: 261 VIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+I++++++ G I+ D P +++ I G P+ + A ++ LL Q+ R
Sbjct: 344 MIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPDRCEHAARIINDLL-QSLRSGP 397
Query: 321 P-PSSFP 326
P P P
Sbjct: 398 PGPPGGP 404
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQN 189
YR+ P +G +IG+ G + +++++ K+ ++ G ER + + +P + K +
Sbjct: 149 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKM 206
Query: 190 KDDD 193
DD
Sbjct: 207 MLDD 210
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVA 164
+ +G + N TV I+ P+ K G VIGK G +K L+E K I +
Sbjct: 212 VSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ 271
Query: 165 DTIPGSE-ERVIIIYSSPTKI 184
D + ++ + I P K+
Sbjct: 272 DGSQNTNVDKPLRIIGDPYKV 292
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+P+ K G ++G+GG + + ++T A + +
Sbjct: 431 IPTHKCGLVIGRGGENVKAINQQTGAFVEI 460
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/85 (31%), Positives = 35/85 (41%)
Query: 361 GMPSTPWMGGYGDQPSRMGSG--SINSCPPGQMGEVSAEFSMKI-LCSAXXXXXXXXXXX 417
G P P GG G P G G N PPG GE++ FS+ C
Sbjct: 396 GPPGPP--GGPGMPPGGRGRGRGQGNWGPPG--GEMT--FSIPTHKCGLVIGRGGE---- 445
Query: 418 FNVKQLQQETGASIHVE-DAPTDSD 441
NVK + Q+TGA + + P + D
Sbjct: 446 -NVKAINQQTGAFVEISRQLPPNGD 469
Score = 47 (21.6 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 21/86 (24%), Positives = 30/86 (34%)
Query: 316 PRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWP---ARNSSLHGMPSTPWMGGYG 372
P PP + P A G PP + +P P ++ ++ P+ W Y
Sbjct: 522 PFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPSKAAAAAADPNAAWAAYYS 581
Query: 373 ---DQPSRM--GSGSINSCPPGQMGE 393
QP G + PP Q GE
Sbjct: 582 HYYQQPPGPVPGPAPAPAAPPAQ-GE 606
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 87 (35.7 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNE-NSTITARL--LVPNNMVGCLLGKRGD 260
+P+ Q A V D + E D GG D NE S I + VP + VG ++G+ G+
Sbjct: 285 DPY-KVQQACEMVMDILRERDQ-GGFG--DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGE 340
Query: 261 VIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+I++++++ G I+ D P +++ I G P+ + A ++ LL Q+ R
Sbjct: 341 MIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPDRCEHAARIINDLL-QSLRSGP 394
Query: 321 P-PSSFP 326
P P P
Sbjct: 395 PGPPGGP 401
Score = 77 (32.2 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVA 164
+ +G + N TV I+ P+ K G VIGK G +K L+E K I +
Sbjct: 209 VSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ 268
Query: 165 DTIPGSE-ERVIIIYSSPTKI 184
D + ++ + I P K+
Sbjct: 269 DGSQNTNVDKPLRIIGDPYKV 289
Score = 55 (24.4 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+P+ K G ++G+GG + + ++T A + +
Sbjct: 428 IPTHKCGLVIGRGGENVKAINQQTGAFVEI 457
Score = 55 (24.4 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 27/85 (31%), Positives = 35/85 (41%)
Query: 361 GMPSTPWMGGYGDQPSRMGSG--SINSCPPGQMGEVSAEFSMKI-LCSAXXXXXXXXXXX 417
G P P GG G P G G N PPG GE++ FS+ C
Sbjct: 393 GPPGPP--GGPGMPPGGRGRGRGQGNWGPPG--GEMT--FSIPTHKCGLVIGRGGE---- 442
Query: 418 FNVKQLQQETGASIHVE-DAPTDSD 441
NVK + Q+TGA + + P + D
Sbjct: 443 -NVKAINQQTGAFVEISRQLPPNGD 466
Score = 47 (21.6 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 21/85 (24%), Positives = 28/85 (32%)
Query: 316 PRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWP--ARNSSLHGMPSTPWMGGYG- 372
P PP + P A G PP + +P P ++ P+ W Y
Sbjct: 519 PFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPNKAAAAADPNAAWAAYYSH 578
Query: 373 --DQPSRM--GSGSINSCPPGQMGE 393
QP G + PP Q GE
Sbjct: 579 YYQQPPGPVPGPAPAPAAPPAQ-GE 602
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 87 (35.7 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNE-NSTITARL--LVPNNMVGCLLGKRGD 260
+P+ Q A V D + E D GG D NE S I + VP + VG ++G+ G+
Sbjct: 288 DPY-KVQQACEMVMDILRERDQ-GGFG--DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGE 343
Query: 261 VIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+I++++++ G I+ D P +++ I G P+ + A ++ LL Q+ R
Sbjct: 344 MIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPDRCEHAARIINDLL-QSLRSGP 397
Query: 321 P-PSSFP 326
P P P
Sbjct: 398 PGPPGGP 404
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQN 189
YR+ P +G +IG+ G + +++++ K+ ++ G ER + + +P + K +
Sbjct: 149 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKM 206
Query: 190 KDDD 193
DD
Sbjct: 207 MLDD 210
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVA 164
+ +G + N TV I+ P+ K G VIGK G +K L+E K I +
Sbjct: 212 VSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ 271
Query: 165 DTIPGSE-ERVIIIYSSPTKI 184
D + ++ + I P K+
Sbjct: 272 DGSQNTNVDKPLRIIGDPYKV 292
Score = 55 (24.4 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+P+ K G ++G+GG + + ++T A + +
Sbjct: 431 IPTHKCGLVIGRGGENVKAINQQTGAFVEI 460
Score = 55 (24.4 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 27/85 (31%), Positives = 35/85 (41%)
Query: 361 GMPSTPWMGGYGDQPSRMGSG--SINSCPPGQMGEVSAEFSMKI-LCSAXXXXXXXXXXX 417
G P P GG G P G G N PPG GE++ FS+ C
Sbjct: 396 GPPGPP--GGPGMPPGGRGRGRGQGNWGPPG--GEMT--FSIPTHKCGLVIGRGGE---- 445
Query: 418 FNVKQLQQETGASIHVE-DAPTDSD 441
NVK + Q+TGA + + P + D
Sbjct: 446 -NVKAINQQTGAFVEISRQLPPNGD 469
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 88 (36.0 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 37/133 (27%), Positives = 62/133 (46%)
Query: 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNE-NSTITARL--LVPNNMVGCLLGKRGD 260
+P+ Q A V D + E D GG D NE S I + VP + VG ++G+ G+
Sbjct: 351 DPY-KVQQACEMVMDILRERDQ-GGFG--DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGE 406
Query: 261 VIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDK 320
+I++++++ G I+ D P +++ I G P + A ++ LL Q+ R
Sbjct: 407 MIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPERCEHAARIINDLL-QSLRSGP 460
Query: 321 P-PSSFPQAYGGQ 332
P P GG+
Sbjct: 461 PGPPGHGMPPGGR 473
Score = 82 (33.9 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 106 IKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAK-ITVA 164
+ +G + + N Q TV I+ P+ K G VIGK G +K L+E K I +
Sbjct: 276 VSRGRGGPPGQFHDYANGQNG-TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQ 334
Query: 165 DTIPGSE-ERVIIIYSSPTKI 184
D + ++ + I P K+
Sbjct: 335 DGSQNTNVDKPLRIIGDPYKV 355
Score = 78 (32.5 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQN 189
YR+ P +G +IG+ G + +++++ K+ ++ G ER + + SP + K +
Sbjct: 213 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKL 270
Query: 190 KDDD 193
DD
Sbjct: 271 MLDD 274
Score = 49 (22.3 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRV 515
+P+ K G ++G+GG + + ++ A + +
Sbjct: 493 IPTHKCGLVIGRGGENVKAINQQRGAFVEI 522
Score = 44 (20.5 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 24/85 (28%), Positives = 33/85 (38%)
Query: 361 GMPSTPWMGGYGDQPSRMGSGSINSC--PPGQMGEVSAEFSMKI-LCSAXXXXXXXXXXX 417
G P P G+G P G G PPG GE++ FS+ C
Sbjct: 459 GPPGPP---GHGMPPGGRGRGRGQGIWGPPG--GEMT--FSIPTHKCGLVIGRGGE---- 507
Query: 418 FNVKQLQQETGASIHVE-DAPTDSD 441
NVK + Q+ GA + + P + D
Sbjct: 508 -NVKAINQQRGAFVEISRQLPPNGD 531
>FB|FBgn0014870 [details] [associations]
symbol:Psi "P-element somatic inhibitor" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685
"U1 snRNP" evidence=IPI] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IDA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003729
GO:GO:0006397 GO:GO:0007283 GO:GO:0048025 GO:GO:0000381
EMBL:AL031863 InterPro:IPR015096 Pfam:PF09005 HSSP:Q96AE4
FlyBase:FBgn0014870 PIR:T13690 ProteinModelPortal:O96828 SMR:O96828
STRING:O96828 PRIDE:O96828 InParanoid:O96828 ArrayExpress:O96828
Bgee:O96828 Uniprot:O96828
Length = 806
Score = 119 (46.9 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 42/148 (28%), Positives = 73/148 (49%)
Query: 132 ILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKD 191
I+ P K+G VIGK G+ +K L+E+T AK+ + P E +I P +I+ K
Sbjct: 229 IMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQE----LI--KPLRISGEAQK- 281
Query: 192 DDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGG--MASDD-DNENSTITARLLVPN 248
E K+ + A +DA + GG M ++ +N N + + VP
Sbjct: 282 ----IEHAKQMVLDLIAQKDAQGQQQGGRGGGGGGGGPGMGFNNFNNGNGGESTEVFVPK 337
Query: 249 NMVGCLLGKRGDVIQRLRSETGANIRVL 276
VG ++GK GD+I+++++E G ++ +
Sbjct: 338 IAVGVVIGKGGDMIRKIQTECGCKLQFI 365
Score = 56 (24.8 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 26/126 (20%), Positives = 54/126 (42%)
Query: 254 LLGKRGDVIQRLRSETGANIRVLPADRLPPC-----AMNTDEMVQISGKPNVAKRALYEV 308
++G+ G+ I+ + ++GA+ + PP + T + V+ + + ++++ E+
Sbjct: 450 VIGRGGETIKLINQQSGAHTEMDRNASNPPNEKLFKSKGTTDQVE-AARQMISEKINMEL 508
Query: 309 STLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWM 368
+ ++ + P P + GGQN +S + N +S G PW
Sbjct: 509 N-VISRKPIGGGPGGGGGNSGGGQN-NSHHNQQQGGYGGQNQMQGGDPNSGAGYQQQPWG 566
Query: 369 GGYGDQ 374
G YG Q
Sbjct: 567 GPYGQQ 572
Score = 41 (19.5 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 590 MNTQQSPYHRVNAQQSPYQNINPQQSSYPMHTHQGAG 626
M QQ + P Q PQQ GAG
Sbjct: 621 MIEQQMKAKQAGGSSGPVQQQQPQQQQQSQQQTGGAG 657
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 94 (38.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 229 MASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288
+ ++ + S + VP N+VG +LGK G + + TGA I++ P N
Sbjct: 289 LGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRN- 347
Query: 289 DEMVQISGKPNVAKRALYEVS 309
V I+G P + A Y ++
Sbjct: 348 -RKVTITGTPAATQAAQYLIT 367
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS--EERVIIIYSSPTKIAK 186
+I+ P+ G +IGK G VK++ E++ A + ++ G +ERV+ + P + K
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 110
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 94 (38.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 229 MASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288
+ ++ + S + VP N+VG +LGK G + + TGA I++ P N
Sbjct: 293 LGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRN- 351
Query: 289 DEMVQISGKPNVAKRALYEVS 309
V I+G P + A Y ++
Sbjct: 352 -RKVTITGTPAATQAAQYLIT 371
Score = 72 (30.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS--EERVIIIYSSPTKIAK 186
+I+ P+ G +IGK G VK++ E++ A + ++ G +ERV+ + P + K
Sbjct: 57 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 114
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 94 (38.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 229 MASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288
+ ++ + S + VP N+VG +LGK G + + TGA I++ P N
Sbjct: 317 LGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRN- 375
Query: 289 DEMVQISGKPNVAKRALYEVS 309
V I+G P + A Y ++
Sbjct: 376 -RKVTITGTPAATQAAQYLIT 395
Score = 72 (30.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS--EERVIIIYSSPTKIAK 186
+I+ P+ G +IGK G VK++ E++ A + ++ G +ERV+ + P + K
Sbjct: 81 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 138
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 94 (38.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 229 MASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288
+ ++ + S + VP N+VG +LGK G + + TGA I++ P N
Sbjct: 321 LGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRN- 379
Query: 289 DEMVQISGKPNVAKRALYEVS 309
V I+G P + A Y ++
Sbjct: 380 -RKVTITGTPAATQAAQYLIT 399
Score = 72 (30.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS--EERVIIIYSSPTKIAK 186
+I+ P+ G +IGK G VK++ E++ A + ++ G +ERV+ + P + K
Sbjct: 85 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 142
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 94 (38.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 229 MASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288
+ ++ + S + VP N+VG +LGK G + + TGA I++ P N
Sbjct: 289 LGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRN- 347
Query: 289 DEMVQISGKPNVAKRALYEVS 309
V I+G P + A Y ++
Sbjct: 348 -RKVTITGTPAATQAAQYLIT 367
Score = 71 (30.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGS--EERVIIIYSSPTKIAK 186
+I+ P+ G +IGK G VK++ E++ A + ++ G +ERV+ + P + K
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 110
>UNIPROTKB|D4ACH3 [details] [associations]
symbol:D4ACH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OrthoDB:EOG46WZ8K IPI:IPI00464805 Ensembl:ENSRNOT00000055302
Uniprot:D4ACH3
Length = 282
Score = 89 (36.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ ER+I + + PT
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL-AGPT 65
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 38/129 (29%), Positives = 61/129 (47%)
Query: 245 LVPNNMV---GCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVA 301
L NN++ GC + +VI L+S TGA ++V D LP +T+ + I+G P
Sbjct: 110 LKANNIIYISGC---REKEVI--LKS-TGAQVQVA-GDMLPN---STERAITIAGIPQSI 159
Query: 302 KRALYEVSTLLHQNPRKD-----KP-PSSFPQAY-GGQNFHSPPAPMADMHPLGNSSWPA 354
+ ++ ++ ++P K +P PSS P + GGQ+ +S + A P S
Sbjct: 160 IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASF-PHTTPSM-C 217
Query: 355 RNSSLHGMP 363
N L G P
Sbjct: 218 LNPDLEGPP 226
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 96 (38.9 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 123 SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA-DTIPGSEERVIIIYSSP 181
+Q A ++ P G +IGK G ++K L ET KI DT P SE+R+ +I +
Sbjct: 235 AQEAQAKGEVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTR 294
Query: 182 TKIAKTQNK 190
+I + +
Sbjct: 295 DQIYRATER 303
Score = 70 (29.7 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 246 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV-QISGKPNVAKRA 304
VP G ++GK G+ I+++ ETGA + PA N DE V +I G A
Sbjct: 338 VPAGKCGLVIGKGGENIKQIERETGATCGLAPAAE----QKNEDEKVFEIKGSQLQIHHA 393
Query: 305 LYEVSTLLHQ-NPRKDKPP 322
+ V + + +P PP
Sbjct: 394 SHLVRIKVGEISPNTPVPP 412
Score = 42 (19.8 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 22/85 (25%), Positives = 33/85 (38%)
Query: 310 TLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMG 369
T ++QNP + S PQA +P A P ++ W A S+ G+ M
Sbjct: 472 TEMYQNPMQQPQASVIPQASADP---APAVNPATGAPDYSAQWAAYYRSI-GLVEQAAM- 526
Query: 370 GYGDQPSRMGSGSINSCPPGQMGEV 394
S+M N+ P G + V
Sbjct: 527 ----VESQMRRNQSNTAPLGDVSGV 547
>UNIPROTKB|F1Q3T8 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0048027 GO:GO:0003730
GeneTree:ENSGT00530000063171 EMBL:AAEX03009368 EMBL:AAEX03009369
EMBL:AAEX03009370 Ensembl:ENSCAFT00000004436 Uniprot:F1Q3T8
Length = 169
Score = 109 (43.4 bits), Expect = 0.00059, P = 0.00059
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
++ T T L +P VG ++GK+G I++L GA+I++ PA+ P + MV I+
Sbjct: 11 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA-PDAKVR---MVIIT 66
Query: 296 GKPNVAKRALYEVSTL--LHQNPRKDKPP-SSFPQAYGGQNFHS-PPAPMAD 343
G P A ++V L +H+N R P + P+ G NF S AP A+
Sbjct: 67 GPPE----AQFKVCALECMHRNFRSFLSPFAGCPEKNSG-NFDSGKAAPTAE 113
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 83 (34.3 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 31/86 (36%), Positives = 43/86 (50%)
Query: 94 PNNQ-FKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKS 152
P N FK ++ K +SS S S+P TV P+ + G +IGK G I K
Sbjct: 63 PTNAIFKAFAMIIDKPEEDISSSMTNSTAASRPPVTVV----PASQCGSLIGK-GKI-KE 116
Query: 153 LREETQAKITVA-DTIPGSEERVIII 177
+RE T A++ A + +P S ER I I
Sbjct: 117 IRESTGAQVQAAGNMLPNSTERAITI 142
Score = 78 (32.5 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ INE+R+ + GA++K +P GS++ V I G
Sbjct: 233 TTSHELTLPNDLIGCIIGRQDAKINEIRQMS-------GAQIKTANPVEGSTDRQVTITG 285
>RGD|1311196 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1311196 GO:GO:0003723 EMBL:CH474015 eggNOG:NOG262512
HOGENOM:HOG000037932 OrthoDB:EOG4T4CV4 UniGene:Rn.98848
EMBL:BC059161 IPI:IPI00370637 SMR:Q6PCT7 UCSC:RGD:1311196
HOVERGEN:HBG062756 InParanoid:Q6PCT7 Genevestigator:Q6PCT7
Uniprot:Q6PCT7
Length = 296
Score = 89 (36.4 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 115 SREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERV 174
SRE+ D + P + +IG+ G +K LR++T A+I V DT +ERV
Sbjct: 40 SREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV-DTEDVGDERV 98
Query: 175 IIIYSSPTKIAKTQ 188
++I P ++ K +
Sbjct: 99 LLISGFPVQVCKAK 112
Score = 70 (29.7 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQIS 295
EN+ + +L VP VG ++G+ G+ I+ + +GA I D+ + +++IS
Sbjct: 121 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKIT---CDKESEGTLLLSRLIKIS 177
Query: 296 G 296
G
Sbjct: 178 G 178
>UNIPROTKB|F8W659 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01021871
ProteinModelPortal:F8W659 SMR:F8W659 Ensembl:ENST00000547619
ArrayExpress:F8W659 Bgee:F8W659 Uniprot:F8W659
Length = 211
Score = 112 (44.5 bits), Expect = 0.00079, P = 0.00079
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 470 KTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGS 529
K + E G ++L+PS G I+G+GG I ++++ T A I++ K +D +PG+
Sbjct: 40 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS----KSKDFYPGT 95
Query: 530 SECIVDIRGSSEHLISAHG 548
+E + I+G+ E L + HG
Sbjct: 96 TERVCLIQGTVEALNAVHG 114
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 92 (37.4 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 36/151 (23%), Positives = 70/151 (46%)
Query: 154 REETQAKIT----VADTIPGSE-ERVIIIYSSPT--KIAKTQNK----DDDSAAETKKES 202
+EE Q + V D I E E I PT ++ N+ +D + E +K
Sbjct: 79 KEENQDSVPLVEEVQDPIHADESENKICSVDQPTDDQVKPEDNQQGCIEDVNGGEHQKVI 138
Query: 203 MEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVI 262
+ D + + + +++ G + + + + T R+ VP++ VG L+GK G+ I
Sbjct: 139 DDDSKEVNDGSSQENGKEENKEVDGEKSQKEVDGTQSTTRRIDVPSSKVGVLIGKGGETI 198
Query: 263 QRLRSETGANIRVL-PADRLPPCAMNTDEMV 292
+ L+ +GA I++L ++ P A+ E++
Sbjct: 199 RYLQFNSGAKIQILRDSEADPSSALRPVEII 229
Score = 78 (32.5 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 28/85 (32%), Positives = 38/85 (44%)
Query: 486 VPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHP---GSSECIVDIRGSSEH 542
VP+ KVG I+G+GG I M+ R+ GAR +L H G E V I G
Sbjct: 278 VPNDKVGLIIGRGGETIKNMQTRS-------GARTQLIPQHAEGDGLKERTVRISGDKMQ 330
Query: 543 LISAHGTYQSFMTSGQSMKVQPSSY 567
+ A + M + +PSSY
Sbjct: 331 IDIATDMIKDVM----NQNARPSSY 351
Score = 40 (19.1 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 589 NMNTQQSPYHRVNAQQSPYQNINPQQSSYPMHTHQGAGTNPHIT 632
NM QQ Y ++ Q P SS P GT T
Sbjct: 576 NMAPQQQQYGYTSSDGPVQQQTYPSYSSAPPSDAYNNGTQTPAT 619
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 650 598 0.00085 120 3 11 23 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 203
No. of states in DFA: 623 (66 KB)
Total size of DFA: 326 KB (2165 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.48u 0.10s 54.58t Elapsed: 00:00:04
Total cpu time: 54.54u 0.10s 54.64t Elapsed: 00:00:04
Start: Fri May 10 08:32:55 2013 End: Fri May 10 08:32:59 2013
WARNINGS ISSUED: 1