BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046946
(650 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 38/189 (20%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQN 189
R+L +++G +IGK G VK +REE+ A+I +++ G+ II + PT
Sbjct: 7 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLAGPT------- 56
Query: 190 KDDDSAAETKKESMEPHCAAQDALLKVHDRII---EEDLFGGMASDDDNENSTITARLLV 246
+A+ K II EED+ M + +T RL+V
Sbjct: 57 ---------------------NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVV 95
Query: 247 PNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALY 306
P + G L+GK G I+ +R TGA ++V D LP +T+ + I+G P +
Sbjct: 96 PASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAGIPQSIIECVK 151
Query: 307 EVSTLLHQN 315
++ ++ +
Sbjct: 152 QICVVMLET 160
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 16/132 (12%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIR-ASAFEGLWNPRSQTIDAILQ-----LQNKTS 472
+VK++++E+GA I++ + + ER+I A ++ + ID + + + N T+
Sbjct: 26 SVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 83
Query: 473 EFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSEC 532
+ + +T RL+VP+S+ G ++G+GG I E+R T A ++V G D P S+E
Sbjct: 84 --ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG------DMLPNSTER 135
Query: 533 IVDIRGSSEHLI 544
+ I G + +I
Sbjct: 136 AITIAGIPQSII 147
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+N T+T RLL+ VG ++GK+G+ ++++R E+GA I +
Sbjct: 1 KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 40
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
T+T RLL+ +VG I+G+ G + +MR + A I +
Sbjct: 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 40
>pdb|2ANR|A Chain A, Crystal Structure (Ii) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH
25NT RNA Hairpin
Length = 178
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAK 186
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT----IE 63
Query: 187 TQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLV 246
N AE +E P A+ + + L + D N +++V
Sbjct: 64 ALNAVHGFIAEKIREX--PQNVAKTEPVSI--------LQPQTTVNPDRANQV---KIIV 110
Query: 247 PNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALY 306
PN+ G ++GK G ++ + ++GA +++ + P + +V +SG+P ++A+
Sbjct: 111 PNSTAGLIIGKGGATVKAIXEQSGAWVQL---SQKPDGINLQNRVVTVSGEPEQNRKAVE 167
Query: 307 EVSTLLHQNPR 317
+ + ++P+
Sbjct: 168 LIIQKIQEDPQ 178
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
++L+PS G I+G+GG I ++++ T A I++ K +D +PG++E + I+G+ E
Sbjct: 9 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL----SKSKDFYPGTTERVCLIQGTIEA 64
Query: 543 LISAHG 548
L + HG
Sbjct: 65 LNAVHG 70
>pdb|2ANN|A Chain A, Crystal Structure (I) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH
25 NT RNA Hairpin
Length = 178
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAK 186
++L PS G +IGK G + L++ET A I ++ D PG+ ERV +I + +
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT----IE 63
Query: 187 TQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLV 246
N AE +E M + A + + + + + D N +++V
Sbjct: 64 ALNAVHGFIAEKIRE-MPQNVAKTEPVSILQPQ---------TTVNPDRANQ---VKIIV 110
Query: 247 PNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALY 306
PN+ G ++GK G ++ + ++GA +++ + P + +V +SG+P ++A+
Sbjct: 111 PNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQNRVVTVSGEPEQNRKAVE 167
Query: 307 EVSTLLHQNPR 317
+ + ++P+
Sbjct: 168 LIIQKIQEDPQ 178
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 483 RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEH 542
++L+PS G I+G+GG I ++++ T A I++ K +D +PG++E + I+G+ E
Sbjct: 9 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL----SKSKDFYPGTTERVCLIQGTIEA 64
Query: 543 LISAHG 548
L + HG
Sbjct: 65 LNAVHG 70
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 394 VSAEFSMKILCSAXXXXXXXXXXXFNVKQLQQETGASIHV---EDAPTDSDERV--IRAS 448
+ +++ +K+L + + QLQ+ETGA+I + +D + ERV I+ +
Sbjct: 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 61
Query: 449 --AFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITT---------RLLVPSSKVGCILGQ 497
A + ++ I + Q KT S TT +++VP+S G I+G+
Sbjct: 62 IEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGK 121
Query: 498 GGHVINEMRRRTQADIRV 515
GG + + ++ A +++
Sbjct: 122 GGATVKAIMEQSGAWVQL 139
>pdb|2P2R|A Chain A, Crystal Structure Of The Third Kh Domain Of Human Poly(C)-
Binding Protein-2 In Complex With C-Rich Strand Of Human
Telomeric Dna
Length = 76
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKP 298
T + L +PN+++GC++G++G I +R +GA I++ P +TD V I+G
Sbjct: 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQXSGAQIKI-----ANPVEGSTDRQVTITGSA 58
Query: 299 NVAKRALYEVSTLL 312
A Y ++ L
Sbjct: 59 ASISLAQYLINVRL 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG 538
T + L +P+ +GCI+G+ G INE+R+ + GA++K+ +P GS++ V I G
Sbjct: 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQXS-------GAQIKIANPVEGSTDRQVTITG 56
Query: 539 SSEHL 543
S+ +
Sbjct: 57 SAASI 61
>pdb|1ZZI|A Chain A, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
pdb|1ZZI|B Chain B, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
pdb|1ZZJ|A Chain A, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZJ|B Chain B, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZJ|C Chain C, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZK|A Chain A, Crystal Structure Of The Third Kh Domain Of Hnrnp K At
0.95a Resolution
Length = 82
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 59
Query: 540 SEHLISAH 547
+ + +A
Sbjct: 60 QDQIQNAQ 67
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
IT ++ +P ++ G ++GK G I+++R E+GA+I++ P + D ++ I+G +
Sbjct: 7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-----DEPLEGSEDRIITITGTQD 61
Query: 300 VAKRALYEVSTLLHQNPRK 318
+ A Y + + Q K
Sbjct: 62 QIQNAQYLLQNSVKQYSGK 80
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
++ P G +IGK G +K +R E+ A I + + + GSE+R+I I + +I Q
Sbjct: 10 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 67
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 29 IKQIRHESGASIKIDEPLEGSEDRIIT------ITGTQDQIQNAQYLLQNSVKQYSGK 80
>pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A
Single_stranded 10mer Dna Oligonucleotide
Length = 89
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P G I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 66
Query: 540 SEHLISAH 547
+ + +A
Sbjct: 67 QDQIQNAQ 74
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
IT ++ +P ++ G ++GK G I+++R E+GA+I++ P + D ++ I+G +
Sbjct: 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-----DEPLEGSEDRIITITGTQD 68
Query: 300 VAKRALYEVSTLLHQNPRK 318
+ A Y + + Q K
Sbjct: 69 QIQNAQYLLQNSVKQYSGK 87
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 119 SFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIY 178
S+G+ ++ P G +IGK G +K +R E+ A I + + + GSE+R+I I
Sbjct: 5 SYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITIT 64
Query: 179 SSPTKIAKTQ 188
+ +I Q
Sbjct: 65 GTQDQIQNAQ 74
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 36 IKQIRHESGASIKIDEPLEGSEDRIIT------ITGTQDQIQNAQYLLQNSVKQYSGK 87
>pdb|1WVN|A Chain A, Crsytal Structure Of Domain 3 Of Human Alpha Polyc Binding
Protein
Length = 82
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 540
T L +P++ +GCI+G+ G INE+R+ + GA++K+ +P GSS V I GS+
Sbjct: 7 THELTIPNNLIGCIIGRQGANINEIRQMS-------GAQIKIANPVEGSSGRQVTITGSA 59
Query: 541 EHLISAHGTYQSFMTSGQSM 560
+ A + ++S + M
Sbjct: 60 ASISLAQYLINARLSSEKGM 79
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 238 STITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGK 297
S T L +PNN++GC++G++G I +R +GA I++ P ++ V I+G
Sbjct: 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI-----ANPVEGSSGRQVTITGS 58
Query: 298 PNVAKRALYEVSTLL 312
A Y ++ L
Sbjct: 59 AASISLAQYLINARL 73
>pdb|2JVZ|A Chain A, Solution Nmr Structure Of The Second And Third Kh Domains
Of Ksrp
Length = 164
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 128 TVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSE----ERVIIIYSSPTK 183
TV I+ P+ K G VIGK G +K L+E K+ + GS+ ++ + I P K
Sbjct: 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQD--GSQNTNVDKPLRIIGDPYK 59
Query: 184 IAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITAR 243
+ Q A V D + E D G D + S I
Sbjct: 60 V-------------------------QQACEMVMDILRERDQGG--FGDRNEYGSRIGGG 92
Query: 244 LL--VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVA 301
+ VP + VG ++G+ G++I++++++ G I+ D P +++ I G P+
Sbjct: 93 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP-----EKIAHIMGPPDRC 147
Query: 302 KRALYEVSTLLH 313
+ A ++ LL
Sbjct: 148 EHAARIINDLLQ 159
>pdb|3VKE|A Chain A, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|B Chain B, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|C Chain C, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|D Chain D, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
Length = 76
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ G+ II + PT
Sbjct: 6 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE---GNSPERIITLTGPT 54
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+T RLL+ VG ++GK+G+ ++R+R E+GA I +
Sbjct: 3 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 38
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
+T RLL+ +VG I+G+ G + +R + GAR+ + + + S E I+ + G
Sbjct: 3 LTIRLLMHGKEVGSIIGKKGESVKRIREES-------GARINISEGN--SPERIITLTGP 53
Query: 540 SEHLISA 546
+ + A
Sbjct: 54 TNAIFKA 60
>pdb|1X4N|A Chain A, Solution Structure Of Kh Domain In Fuse Binding Protein 1
Length = 92
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 230 ASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-ADRLPP--CAM 286
+S + S +T VP+ MVG ++G+ G+ I R++ E+G I++ P + LP C +
Sbjct: 5 SSGHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCML 64
Query: 287 -NTDEMVQISGKPNVAKRALYEV 308
T E VQ AKR L ++
Sbjct: 65 TGTPESVQ------SAKRLLDQI 81
>pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3)
Length = 89
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539
ITT++ +P I+G+GG I ++R + GA +K+ +P GS + I+ I G+
Sbjct: 14 ITTQVTIPKDLARSIIGKGGQRIKQIRHES-------GASIKIDEPLEGSEDRIITITGT 66
Query: 540 SEHLISAH 547
+ + +A
Sbjct: 67 QDQIQNAQ 74
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 299
IT ++ +P ++ ++GK G I+++R E+GA+I++ P + D ++ I+G +
Sbjct: 14 ITTQVTIPKDLARSIIGKGGQRIKQIRHESGASIKI-----DEPLEGSEDRIITITGTQD 68
Query: 300 VAKRALYEVSTLLHQ 314
+ A Y + + Q
Sbjct: 69 QIQNAQYLLQNSVKQ 83
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 142 VIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQ 188
+IGK G +K +R E+ A I + + + GSE+R+I I + +I Q
Sbjct: 28 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 74
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 420 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEK 477
+KQ++ E+GASI +++ S++R+I + + Q +A LQN ++S K
Sbjct: 36 IKQIRHESGASIKIDEPLEGSEDRIITITG------TQDQIQNAQYLLQNSVKQYSGK 87
>pdb|2AXY|A Chain A, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|B Chain B, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|C Chain C, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|D Chain D, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2PQU|A Chain A, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|B Chain B, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|C Chain C, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|D Chain D, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PY9|A Chain A, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|B Chain B, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|C Chain C, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|D Chain D, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
Length = 73
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+N T+T RLL VG ++GK+G+ +++ R E+GA I +
Sbjct: 1 KNVTLTIRLLXHGKEVGSIIGKKGESVKKXREESGARINI 40
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK REE+ A+I +++ G+ II + PT
Sbjct: 8 RLLXHGKEVGSIIGKKGESVKKXREESGARINISE---GNCPERIITLAGPT 56
>pdb|1ZTG|A Chain A, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|B Chain B, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|C Chain C, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|D Chain D, Human Alpha Polyc Binding Protein Kh1
Length = 74
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 131 RILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 182
R+L +++G +IGK G VK +REE+ A+I +++ G+ II + PT
Sbjct: 6 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE---GNCPERIITLTGPT 54
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 275
+T RLL+ VG ++GK+G+ ++R+R E+GA I +
Sbjct: 3 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 38
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
G +T RLL+ +VG I+G+ G + +R + A I +
Sbjct: 1 GILTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 38
>pdb|1DTJ|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|C Chain C, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|D Chain D, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
Length = 76
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
+ VP N+VG +LGK G + + TGA I++ P N V I+G P +
Sbjct: 7 MAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRN--RRVTITGSPAATQA 64
Query: 304 ALYEVS 309
A Y +S
Sbjct: 65 AQYLIS 70
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKTQ 188
P +G ++GK G + +E T A+I ++ + +PG+ R + I SP Q
Sbjct: 10 PENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 66
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS---- 539
+ VP + VG ILG+GG + E + T A I++ K + PG+ V I GS
Sbjct: 7 MAVPENLVGAILGKGGKTLVEYQELTGARIQI----SKKGEFLPGTRNRRVTITGSPAAT 62
Query: 540 --SEHLISAHGTYQ 551
+++LIS TY+
Sbjct: 63 QAAQYLISQRVTYE 76
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 24/157 (15%)
Query: 174 VIIIYSSPTKIAKTQNKDDDSAAETKKE---------SMEPHCAAQDALLKVHDRIIEED 224
V+I +P I + N D A + +K M+P + A+ K+H+ + EE
Sbjct: 33 VVIYTKNPEIITENGNLIRDIAKDIRKRIIIRSDRSVLMDP----EKAIRKIHEIVPEEA 88
Query: 225 LFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPC 284
++ DD +T +++ G ++GK G + + TG ++L R PP
Sbjct: 89 KITNISFDD------VTCEVIIEARKPGLVIGKYGSTSREIVKNTGWAPKIL---RTPPI 139
Query: 285 AMNTDEMVQISGKPNVA--KRALYEVSTLLHQNPRKD 319
+ E ++ + + N K+ L ++ +HQ P+ D
Sbjct: 140 SSEIIERIRRTLRKNSKERKKILQQLGNRIHQKPKYD 176
>pdb|1EC6|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
pdb|1EC6|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
Length = 87
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
+ VP N+VG +LGK G + + TGA I++ P N V I+G P +
Sbjct: 7 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRN--RRVTITGSPAATQA 64
Query: 304 ALYEVS 309
A Y +S
Sbjct: 65 AQYLIS 70
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 132 ILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIAKTQ 188
I P +G ++GK G + +E T A+I ++ + +PG+ R + I SP Q
Sbjct: 7 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 66
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS---- 539
+ VP + VG ILG+GG + E + T A I++ K + PG+ V I GS
Sbjct: 7 IAVPENLVGAILGKGGKTLVEYQELTGARIQI----SKKGEFLPGTRNRRVTITGSPAAT 62
Query: 540 --SEHLISAHGTYQSFMTSGQSMKV 562
+++LIS TY+ + + KV
Sbjct: 63 QAAQYLISQRVTYEQGVRASNPQKV 87
>pdb|3KRM|A Chain A, Imp1 Kh34
pdb|3KRM|B Chain B, Imp1 Kh34
pdb|3KRM|C Chain C, Imp1 Kh34
Length = 163
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 94 PNNQFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSL 153
P QFK +G + + E FG + I P+ G VIGK G V L
Sbjct: 57 PEAQFKAQGRI------YGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNEL 110
Query: 154 REETQAKITV-ADTIPGSEERVII-----IYSSPTKIAKTQNKDDDSAAETKKE 201
+ T A++ V D P ++VI+ Y+S Q K D A+ K++
Sbjct: 111 QNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQM----AQRKIRDILAQVKQQ 160
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 419 NVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFS--- 475
++KQL + ASI + AP ++ + +R G P A ++ K E +
Sbjct: 24 HIKQLSRFASASIKI--APPETPDSKVRMVIITG---PPEAQFKAQGRIYGKLKEENFFG 78
Query: 476 --EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 515
E+ + T + VP+S G ++G+GG +NE++ T A++ V
Sbjct: 79 PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 120
>pdb|1DT4|A Chain A, Crystal Structure Of Nova-1 Kh3 K-Homology Rna-Binding
Domain
Length = 73
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 244 LLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKR 303
+ VP N+VG +LGK G + + TG I++ P N V I+G P +
Sbjct: 7 IAVPENLVGAILGKGGKTLVEYQELTGCRIQISKKGEFLPGTRN--RKVTITGTPAATQA 64
Query: 304 ALYEVS 309
A Y ++
Sbjct: 65 AQYLIT 70
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 129 VYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA---DTIPGSEERVIIIYSSPTKIA 185
V I P +G ++GK G + +E T +I ++ + +PG+ R + I +P
Sbjct: 4 VVEIAVPENLVGAILGKGGKTLVEYQELTGCRIQISKKGEFLPGTRNRKVTITGTPAATQ 63
Query: 186 KTQ 188
Q
Sbjct: 64 AAQ 66
>pdb|2OPU|A Chain A, Solution Nmr Structure Of The First Domain Of Ksrp
Length = 89
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 238 STITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP-ADRLPPCAMNTDEMVQISG 296
+++T VP+ MVG ++G+ G+ I +++ ++G +++ P + LP + V ++G
Sbjct: 14 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP------ERSVSLTG 67
Query: 297 KPNVAKRA 304
P ++A
Sbjct: 68 APESVQKA 75
>pdb|1J4W|A Chain A, Complex Of The Kh3 And Kh4 Domains Of Fbp With A
Single_stranded 29mer Dna Oligonucleotide From The Fuse
Element Of The C-Myc Oncogene
Length = 174
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSE---CIVDIRGSS 540
+VP+ K G I+G+GG I + +++ GAR++LQ P +++ + IRG+
Sbjct: 108 FIVPTGKTGLIIGKGGETIKSISQQS-------GARIELQRNPPPNADPNMKLFTIRGTP 160
Query: 541 EHL 543
+ +
Sbjct: 161 QQI 163
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEE---RVIIIYSSPTKI 184
+ + P+ K G +IGK G +KS+ +++ A+I + P + + ++ I +P +I
Sbjct: 106 FNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 163
>pdb|1QGO|A Chain A, Anaerobic Cobalt Chelatase In Cobalamin Biosynthesis From
Salmonella Typhimurium
pdb|2XWP|A Chain A, Anaerobic Cobalt Chelatase (Cbik) From Salmonella
Typhimurium In Complex With Metalated Tetrapyrrole
Length = 264
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 343 DMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPS 376
DM SW R ++ G+P+TPW+ G G+ P+
Sbjct: 211 DMASDDGDSWKMRFNAA-GIPATPWLSGLGENPA 243
>pdb|1X4M|A Chain A, Solution Structure Of Kh Domain In Far Upstream Element
Binding Protein 1
Length = 94
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV 163
+ V I+ P+ K G VIGK G +K L+E K+ +
Sbjct: 14 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVM 50
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVV 516
+++P+SK G ++G+GG I +++ R A +++V
Sbjct: 19 IMIPASKAGLVIGKGGETIKQLQER--AGVKMV 49
>pdb|2OPV|A Chain A, Solution Nmr Structure Of The Second Domain Of Ksrp
Length = 85
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 128 TVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITV 163
TV I+ P+ K G VIGK G +K L+E K+ +
Sbjct: 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 49
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 476 EKGTITTRLLVPSSKVGCILGQGGHVINEMRRR 508
+ GT+ +++P+ K G ++G+GG I +++ R
Sbjct: 11 QNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQER 42
>pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
Length = 723
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 123 SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVAD 165
S+ A ++ I KI VIGK G+++++L EET I + D
Sbjct: 555 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 597
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 232 DDDNENST--ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D D ++ST ITA LL C++G RG + RL G + V+P
Sbjct: 66 DKDAKHSTLHITATLLDDTATYICVVGDRGSALGRLHFGAGTQLIVIP 113
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 232 DDDNENST--ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D D ++ST ITA LL C++G RG + RL G + V+P
Sbjct: 68 DKDAKHSTLHITATLLDDTATYICVVGDRGSALGRLHFGAGTQLIVIP 115
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 232 DDDNENST--ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277
D D ++ST ITA LL C++G RG + RL G + V+P
Sbjct: 66 DKDAKHSTLHITATLLDDTATYICVVGDRGSALGRLHFGAGTQLIVIP 113
>pdb|1WE8|A Chain A, Solution Structure Of Kh Domain In Protein Bab28342
Length = 104
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 135 PSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNK 190
P R +G +IG+ G ++S+ + + AKIT G+ ++ S KI+ TQ +
Sbjct: 22 PQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-----LLLSRLIKISGTQKE 72
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 445 IRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINE 504
+ A+A + + R +D +++ + E S + +P K+G ++G +IN+
Sbjct: 563 VLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQ 622
Query: 505 MRRRTQADIRV 515
++ T A+I +
Sbjct: 623 IQEDTGAEITI 633
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,726,221
Number of Sequences: 62578
Number of extensions: 693908
Number of successful extensions: 1304
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 93
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)