Query 046946
Match_columns 650
No_of_seqs 397 out of 2064
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 3.9E-25 1.3E-29 214.1 12.8 172 125-316 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 2.2E-24 7.6E-29 205.8 16.3 154 128-315 3-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 2.5E-24 8.5E-29 204.8 13.4 157 126-314 3-159 (160)
4 2jvz_A KH type-splicing, FAR u 99.9 6.3E-24 2.2E-28 202.7 13.9 157 128-314 2-160 (164)
5 1j4w_A FUSE binding protein; s 99.9 9.8E-24 3.3E-28 203.6 14.7 173 127-312 2-174 (174)
6 3krm_A Insulin-like growth fac 99.9 3.9E-23 1.3E-27 197.1 11.1 149 398-558 3-158 (163)
7 2anr_A Neuro-oncological ventr 99.9 2.9E-23 1E-27 200.9 9.1 152 397-556 5-175 (178)
8 3n89_A Defective in GERM LINE 99.9 1.1E-22 3.8E-27 214.9 14.3 226 235-554 25-259 (376)
9 1j4w_A FUSE binding protein; s 99.9 4.4E-23 1.5E-27 199.0 10.2 154 397-554 2-174 (174)
10 2jzx_A Poly(RC)-binding protei 99.9 6.1E-23 2.1E-27 195.2 7.6 149 397-556 4-159 (160)
11 2jvz_A KH type-splicing, FAR u 99.9 2.3E-22 7.8E-27 191.9 11.3 149 398-556 2-160 (164)
12 3n89_A Defective in GERM LINE 99.8 5.3E-20 1.8E-24 194.5 10.7 292 124-552 26-337 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 5.3E-18 1.8E-22 158.1 9.6 137 127-314 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 3.8E-17 1.3E-21 152.3 8.2 136 397-556 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 4.9E-15 1.7E-19 146.8 12.5 143 128-315 34-192 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.5 5.4E-15 1.8E-19 146.5 6.3 140 398-556 34-191 (219)
17 1dtj_A RNA-binding neurooncolo 99.5 6E-14 2.1E-18 116.1 7.4 73 480-556 3-75 (76)
18 1tua_A Hypothetical protein AP 99.5 8.7E-14 3E-18 134.5 8.9 140 129-314 5-160 (191)
19 2hh2_A KH-type splicing regula 99.5 6.9E-14 2.4E-18 123.5 7.3 73 481-557 8-80 (107)
20 1wvn_A Poly(RC)-binding protei 99.5 5.5E-14 1.9E-18 118.2 5.8 75 478-559 4-78 (82)
21 1zzk_A Heterogeneous nuclear r 99.4 1.4E-13 4.7E-18 115.7 7.7 72 478-556 5-76 (82)
22 2p2r_A Poly(RC)-binding protei 99.4 6.8E-14 2.3E-18 115.8 5.3 73 478-557 3-75 (76)
23 2axy_A Poly(RC)-binding protei 99.4 7.6E-14 2.6E-18 114.6 5.0 70 478-556 3-72 (73)
24 1zzk_A Heterogeneous nuclear r 99.4 2.4E-13 8.4E-18 114.2 6.5 62 126-187 5-66 (82)
25 2axy_A Poly(RC)-binding protei 99.4 3.7E-13 1.3E-17 110.4 6.6 70 238-314 3-72 (73)
26 1x4n_A FAR upstream element bi 99.4 3.4E-13 1.1E-17 115.8 6.5 73 478-557 13-85 (92)
27 2dgr_A Ring finger and KH doma 99.4 1.3E-13 4.5E-18 115.8 3.7 69 478-556 8-76 (83)
28 1ec6_A RNA-binding protein NOV 99.4 1.8E-13 6E-18 116.4 4.4 73 480-556 3-75 (87)
29 1j5k_A Heterogeneous nuclear r 99.4 2.3E-13 7.8E-18 116.2 4.3 72 478-556 12-83 (89)
30 1wvn_A Poly(RC)-binding protei 99.4 1.1E-12 3.9E-17 110.1 7.7 73 238-315 4-76 (82)
31 2opv_A KHSRP protein; KH domai 99.4 1.5E-12 5.1E-17 110.1 8.5 73 478-555 12-84 (85)
32 2p2r_A Poly(RC)-binding protei 99.4 8.7E-13 3E-17 109.1 6.8 72 238-314 3-74 (76)
33 2hh3_A KH-type splicing regula 99.3 8.6E-13 2.9E-17 116.1 6.5 72 479-557 10-81 (106)
34 1dtj_A RNA-binding neurooncolo 99.3 1.7E-12 6E-17 107.3 8.0 73 240-314 3-75 (76)
35 1j5k_A Heterogeneous nuclear r 99.3 3.4E-13 1.1E-17 115.1 3.7 63 125-187 11-73 (89)
36 1tua_A Hypothetical protein AP 99.3 4.3E-13 1.5E-17 129.7 4.1 139 399-556 5-160 (191)
37 1x4m_A FAR upstream element bi 99.3 1.1E-12 3.7E-17 113.2 5.7 74 478-556 13-86 (94)
38 2opv_A KHSRP protein; KH domai 99.3 5.4E-12 1.9E-16 106.6 9.2 75 237-314 11-85 (85)
39 1we8_A Tudor and KH domain con 99.3 3.1E-12 1.1E-16 112.4 7.5 75 477-556 12-86 (104)
40 1x4n_A FAR upstream element bi 99.3 4.8E-12 1.6E-16 108.6 7.5 74 237-315 12-85 (92)
41 1x4m_A FAR upstream element bi 99.3 5E-12 1.7E-16 108.9 7.3 77 235-314 10-86 (94)
42 1ec6_A RNA-binding protein NOV 99.3 4E-12 1.4E-16 108.0 6.1 73 240-314 3-75 (87)
43 2dgr_A Ring finger and KH doma 99.3 2.7E-12 9.1E-17 107.8 4.5 71 236-314 6-76 (83)
44 2hh2_A KH-type splicing regula 99.2 9.8E-12 3.4E-16 109.7 7.8 73 241-315 8-80 (107)
45 2hh3_A KH-type splicing regula 99.2 7.7E-12 2.6E-16 110.0 7.1 71 240-315 11-81 (106)
46 1vig_A Vigilin; RNA-binding pr 99.2 6.1E-12 2.1E-16 102.6 5.7 67 479-554 4-70 (71)
47 2cte_A Vigilin; K homology typ 99.2 7.6E-12 2.6E-16 107.8 5.9 70 478-556 15-84 (94)
48 2ctl_A Vigilin; K homology typ 99.2 1.5E-11 5E-16 106.5 7.5 73 478-556 15-87 (97)
49 1we8_A Tudor and KH domain con 99.2 2.7E-11 9.2E-16 106.3 8.8 78 236-316 11-88 (104)
50 2ctm_A Vigilin; K homology typ 99.2 1.6E-11 5.6E-16 105.8 6.6 71 478-556 15-85 (95)
51 2ctm_A Vigilin; K homology typ 99.1 8.2E-11 2.8E-15 101.4 8.2 74 235-314 12-85 (95)
52 1vig_A Vigilin; RNA-binding pr 99.1 4.4E-11 1.5E-15 97.5 6.1 68 238-312 3-70 (71)
53 2cte_A Vigilin; K homology typ 99.1 5.4E-11 1.8E-15 102.5 6.7 74 236-316 13-86 (94)
54 2ctk_A Vigilin; K homology typ 99.1 3.7E-11 1.3E-15 105.3 4.8 70 478-556 15-84 (104)
55 2ctl_A Vigilin; K homology typ 99.1 1.1E-10 3.9E-15 100.9 7.8 72 239-314 16-87 (97)
56 2ctf_A Vigilin; K homology typ 99.1 1.9E-10 6.6E-15 100.3 7.7 65 240-314 27-92 (102)
57 2ctf_A Vigilin; K homology typ 99.1 3.6E-11 1.2E-15 105.0 2.7 66 479-556 26-92 (102)
58 2ctk_A Vigilin; K homology typ 99.0 3.7E-10 1.3E-14 98.9 6.2 69 239-314 16-84 (104)
59 2ctj_A Vigilin; K homology typ 99.0 2.9E-10 9.9E-15 97.8 4.4 70 478-556 15-85 (95)
60 2ctj_A Vigilin; K homology typ 98.9 1.3E-09 4.5E-14 93.8 6.1 73 235-314 12-85 (95)
61 2cpq_A FragIle X mental retard 98.7 1.1E-08 3.8E-13 86.6 3.8 65 478-554 13-79 (91)
62 2cpq_A FragIle X mental retard 98.6 5E-08 1.7E-12 82.6 5.0 68 236-313 11-80 (91)
63 2yqr_A KIAA0907 protein; struc 98.4 4.7E-07 1.6E-11 80.7 6.6 78 479-556 11-99 (119)
64 1k1g_A SF1-BO isoform; splicin 98.4 9.3E-07 3.2E-11 80.4 8.6 77 238-314 5-99 (131)
65 1k1g_A SF1-BO isoform; splicin 98.4 7.7E-07 2.6E-11 80.9 8.1 77 479-556 6-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.3 1.9E-06 6.6E-11 76.7 9.4 77 238-314 10-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.0 8E-06 2.7E-10 74.6 6.3 75 240-314 2-101 (140)
68 2bl5_A MGC83862 protein, quaki 97.9 5.8E-06 2E-10 75.6 4.7 76 480-556 2-101 (140)
69 3u1k_A Polyribonucleotide nucl 97.7 1.2E-05 4.3E-10 91.0 2.8 65 477-554 564-629 (630)
70 3u1k_A Polyribonucleotide nucl 97.6 7.6E-05 2.6E-09 84.6 7.7 90 209-312 539-629 (630)
71 2cxc_A NUSA; transcription ter 97.6 2.7E-05 9.2E-10 71.6 2.7 104 128-276 36-139 (144)
72 3v69_A Protein filia; RNA-bind 97.4 0.00018 6.2E-09 64.5 6.1 66 482-555 58-123 (140)
73 3v69_A Protein filia; RNA-bind 97.2 0.00072 2.5E-08 60.6 7.0 67 242-314 58-124 (140)
74 4aid_A Polyribonucleotide nucl 97.0 0.00017 6E-09 82.6 2.1 66 478-556 568-634 (726)
75 2cxc_A NUSA; transcription ter 97.0 9.8E-05 3.3E-09 67.9 -0.4 101 398-516 36-139 (144)
76 4aid_A Polyribonucleotide nucl 96.8 0.00084 2.9E-08 77.0 4.7 92 209-314 542-634 (726)
77 2asb_A Transcription elongatio 96.2 0.0037 1.3E-07 62.3 5.1 97 137-279 126-223 (251)
78 1k0r_A NUSA; two component arr 96.1 0.0048 1.6E-07 64.9 5.5 96 137-278 249-345 (366)
79 1hh2_P NUSA, N utilization sub 94.9 0.026 8.8E-07 59.1 5.6 95 137-277 245-340 (344)
80 2asb_A Transcription elongatio 94.7 0.0064 2.2E-07 60.6 0.4 93 408-518 127-222 (251)
81 3cdi_A Polynucleotide phosphor 94.1 0.0099 3.4E-07 68.4 0.4 65 478-555 558-623 (723)
82 1k0r_A NUSA; two component arr 94.0 0.013 4.4E-07 61.7 0.9 94 407-518 249-345 (366)
83 3cdi_A Polynucleotide phosphor 92.7 0.043 1.5E-06 63.1 2.6 91 209-313 532-623 (723)
84 1e3p_A Guanosine pentaphosphat 92.6 0.0084 2.9E-07 69.2 -3.3 63 479-554 597-660 (757)
85 1hh2_P NUSA, N utilization sub 91.8 0.054 1.8E-06 56.7 1.9 92 408-517 246-340 (344)
86 1e3p_A Guanosine pentaphosphat 91.0 0.029 9.9E-07 64.8 -1.4 89 209-312 571-660 (757)
87 2pt7_G HP1451, hypothetical pr 68.9 2.3 8E-05 39.0 2.5 29 129-157 34-62 (152)
88 1wh9_A 40S ribosomal protein S 64.8 2.7 9.1E-05 35.2 1.8 28 129-156 36-63 (92)
89 2pt7_G HP1451, hypothetical pr 47.0 6 0.00021 36.3 1.2 30 399-428 34-63 (152)
90 1wh9_A 40S ribosomal protein S 43.5 9.4 0.00032 31.8 1.7 27 242-268 37-63 (92)
91 4hhu_A OR280; engineered prote 39.7 1.8E+02 0.0063 25.0 12.0 28 287-314 121-148 (170)
92 3gku_A Probable RNA-binding pr 34.1 13 0.00045 36.3 1.3 32 130-161 94-125 (225)
93 3u5c_D RP13, YS3, 40S ribosoma 32.7 15 0.00051 36.1 1.5 28 130-157 46-73 (240)
94 3j20_C 30S ribosomal protein S 32.3 15 0.00052 35.4 1.4 27 130-156 42-68 (210)
95 2xzm_C KH domain containing pr 30.5 20 0.0007 35.3 2.0 29 129-157 48-76 (243)
96 3iev_A GTP-binding protein ERA 30.0 22 0.00075 36.0 2.3 38 127-164 239-285 (308)
97 3iz6_B 40S ribosomal protein S 29.1 15 0.00053 35.7 0.9 29 129-157 45-73 (227)
98 3iev_A GTP-binding protein ERA 27.9 26 0.00088 35.5 2.4 37 239-275 239-284 (308)
99 2ba0_A Archeal exosome RNA bin 27.1 1.1E+02 0.0037 29.6 6.7 58 243-311 139-196 (229)
100 3r8n_C 30S ribosomal protein S 25.5 17 0.00057 35.0 0.4 26 131-156 64-89 (206)
101 2zkq_c 40S ribosomal protein S 25.0 19 0.00064 35.5 0.7 29 129-157 45-73 (243)
102 3u5c_D RP13, YS3, 40S ribosoma 24.5 20 0.00068 35.2 0.7 30 479-508 43-72 (240)
103 4hhu_A OR280; engineered prote 23.5 3.5E+02 0.012 23.2 10.7 114 418-555 22-147 (170)
104 3i1m_C 30S ribosomal protein S 23.3 19 0.00065 35.3 0.3 26 131-156 65-90 (233)
105 3iz6_B 40S ribosomal protein S 22.5 21 0.00072 34.8 0.4 30 479-508 43-72 (227)
106 3j20_C 30S ribosomal protein S 21.6 20 0.00067 34.6 0.0 28 480-507 40-67 (210)
107 2ba0_A Archeal exosome RNA bin 21.4 77 0.0026 30.7 4.3 59 482-553 138-196 (229)
108 2vqe_C 30S ribosomal protein S 21.3 29 0.00098 34.1 1.1 25 132-156 66-90 (239)
109 3bbn_C Ribosomal protein S3; s 20.3 25 0.00084 34.1 0.4 26 132-157 74-99 (218)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=3.9e-25 Score=214.15 Aligned_cols=172 Identities=22% Similarity=0.415 Sum_probs=127.6
Q ss_pred CCceEEEEEecCccccceeccCchHHHHHHHHhCceEEEecC---CCCCCceEEEEecChhhhhhccCCccchhhhhhcc
Q 046946 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADT---IPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKE 201 (650)
Q Consensus 125 ~~~~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~---~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~ 201 (650)
+++++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++++|+|+|+|.++++.+|.+++.++..+....
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 82 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQN 82 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCc
Confidence 347999999999999999999999999999999999999853 47899999999999888766544333222111000
Q ss_pred cCCcccHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCC
Q 046946 202 SMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRL 281 (650)
Q Consensus 202 ~~~~~~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~ 281 (650)
.+......+ . .. ......+...+++|+||.+++|+||||+|++||+|+++|||+|+|.+.+.
T Consensus 83 ------~~~~~~~~~----~-----~~--~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~- 144 (178)
T 2anr_A 83 ------VAKTEPVSI----L-----QP--QTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD- 144 (178)
T ss_dssp ----------------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC--
T ss_pred ------cccCCcccc----c-----CC--ccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC-
Confidence 000000000 0 00 00112234578999999999999999999999999999999999986432
Q ss_pred CCCCCCCCceEEEecCHHHHHHHHHHHHHHHccCC
Q 046946 282 PPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNP 316 (650)
Q Consensus 282 p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~~ 316 (650)
+....++.|+|+|++++|++|+.+|.+++.++|
T Consensus 145 --~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 145 --GINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -----CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred --CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 334678999999999999999999999999865
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=205.80 Aligned_cols=154 Identities=27% Similarity=0.472 Sum_probs=127.4
Q ss_pred eEEEEEecCccccceeccCchHHHHHHHHhCceEEEecC-CCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCcc
Q 046946 128 TVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADT-IPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPH 206 (650)
Q Consensus 128 ~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~-~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~~ 206 (650)
-+++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++++|+|+|+|+++++.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~--------------------- 61 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQF--------------------- 61 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHH---------------------
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHH---------------------
Confidence 579999999999999999999999999999999999974 6789999999999977643
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCC
Q 046946 207 CAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286 (650)
Q Consensus 207 ~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~ 286 (650)
.|..++.+.+.+...+. .......+++|+||.+++|+||||+|++|++|+++|||+|.|.. +..|. .
T Consensus 62 ----~A~~~I~~~~~e~~~~~------~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~--~ 128 (163)
T 3krm_A 62 ----KAQGRIYGKLKEENFFG------PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPD--E 128 (163)
T ss_dssp ----HHHHHHHHHHHHTTSSC------SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCC--T
T ss_pred ----HHHHHHHHHHhcccccc------cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCC--C
Confidence 45566666665442211 12234677899999999999999999999999999999999974 44443 1
Q ss_pred CCCceEEEecCHHHHHHHHHHHHHHHccC
Q 046946 287 NTDEMVQISGKPNVAKRALYEVSTLLHQN 315 (650)
Q Consensus 287 ~~dr~V~I~G~~~~V~~A~~~I~~~l~~~ 315 (650)
..++.|+|+|++++|++|+.+|.+++++.
T Consensus 129 ~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 129 NDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp TSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 33448999999999999999999999874
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=204.84 Aligned_cols=157 Identities=29% Similarity=0.523 Sum_probs=126.9
Q ss_pred CceEEEEEecCccccceeccCchHHHHHHHHhCceEEEecCCCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCc
Q 046946 126 ADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEP 205 (650)
Q Consensus 126 ~~~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~ 205 (650)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+. ++++|+|+|+|..+++.+
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~~------------------- 61 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFK------------------- 61 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHHH-------------------
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHHH-------------------
Confidence 36899999999999999999999999999999999999975 578999999999776544
Q ss_pred ccHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCC
Q 046946 206 HCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCA 285 (650)
Q Consensus 206 ~~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~ 285 (650)
|..++.+.+.+.. ..............++++|+||.+++|+||||+|++|++|+++|||+|+|.. +..|
T Consensus 62 ------A~~~I~~~i~e~~-~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~--- 130 (160)
T 2jzx_A 62 ------AFAMIIDKLEEDI-SSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP--- 130 (160)
T ss_dssp ------HHHHHHHHHHHHH-TSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCST---
T ss_pred ------HHHHHHHHHHhhc-cccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCC---
Confidence 4444544444321 1111111112334689999999999999999999999999999999999974 3333
Q ss_pred CCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 286 MNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 286 ~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
...++.|+|+|++++|++|+.+|.+++.+
T Consensus 131 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 131 NSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp TCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999875
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=6.3e-24 Score=202.71 Aligned_cols=157 Identities=25% Similarity=0.410 Sum_probs=123.1
Q ss_pred eEEEEEecCccccceeccCchHHHHHHHHhCceEEEecC--CCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCc
Q 046946 128 TVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADT--IPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEP 205 (650)
Q Consensus 128 ~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~--~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~ 205 (650)
++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .+++++|+|+|+|+++++.+
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~------------------- 62 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQ------------------- 62 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHH-------------------
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHH-------------------
Confidence 688999999999999999999999999999999999753 35678999999999777544
Q ss_pred ccHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCC
Q 046946 206 HCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCA 285 (650)
Q Consensus 206 ~~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~ 285 (650)
|+..+.+.+.+....+............++++|.||.+++|+||||+|++|++|+++|||+|.|.+.+.
T Consensus 63 ------A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~----- 131 (164)
T 2jvz_A 63 ------ACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG----- 131 (164)
T ss_dssp ------HHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----
T ss_pred ------HHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----
Confidence 455555554432110000000011111345789999999999999999999999999999999985331
Q ss_pred CCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 286 MNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 286 ~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
...++.|+|+|++++|++|+.+|.+++++
T Consensus 132 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 132 TGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp TSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 25689999999999999999999999875
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=9.8e-24 Score=203.57 Aligned_cols=173 Identities=18% Similarity=0.277 Sum_probs=124.0
Q ss_pred ceEEEEEecCccccceeccCchHHHHHHHHhCceEEEecCCCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCcc
Q 046946 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPH 206 (650)
Q Consensus 127 ~~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~~ 206 (650)
..+++|+||.+++|.||||+|++||+|+++|||+|+|.+..+++++|+|+|+|.++++.+|..++.++..+.+.....+.
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~ 81 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGP 81 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC-------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 46899999999999999999999999999999999999766688999999999988887765544433322110000000
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCC
Q 046946 207 CAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAM 286 (650)
Q Consensus 207 ~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~ 286 (650)
.+..... .+.. . . .........++++|+||.+++|+||||+|++||+|+++|||+|+|.... +.+..
T Consensus 82 ~p~~~~~----~~~~-~----~--~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~ 148 (174)
T 1j4w_A 82 GPGGRGR----GRGQ-G----N--WNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNAD 148 (174)
T ss_dssp ---------------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSC
T ss_pred CCCCCCC----CCCC-C----c--cccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCC
Confidence 0000000 0000 0 0 0000112346889999999999999999999999999999999998532 33445
Q ss_pred CCCceEEEecCHHHHHHHHHHHHHHH
Q 046946 287 NTDEMVQISGKPNVAKRALYEVSTLL 312 (650)
Q Consensus 287 ~~dr~V~I~G~~~~V~~A~~~I~~~l 312 (650)
..++.|+|+|++++|++|+.+|.++|
T Consensus 149 ~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 149 PNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp TTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHhC
Confidence 67899999999999999999999874
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=3.9e-23 Score=197.14 Aligned_cols=149 Identities=26% Similarity=0.367 Sum_probs=120.8
Q ss_pred eEEEEEecCCccceecccCccchhchhhhcCceEEecCC-CCCCCccEEEEeccCCCcCccchHHHHHHHHhhhcccc--
Q 046946 398 FSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDA-PTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEF-- 474 (650)
Q Consensus 398 ~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~-~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~~~-- 474 (650)
.+++|+||...+|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+.+.+ .+|...+...+.+.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v------~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQ------FKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHH------HHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHH------HHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999999975 467899999999987333 33333333322221
Q ss_pred ---ccCCceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCC-CceEEEEEcCHHHHHHHHHHH
Q 046946 475 ---SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGS-SECIVDIRGSSEHLISAHGTY 550 (650)
Q Consensus 475 ---~~~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~-~er~V~I~G~~e~V~~A~~lI 550 (650)
......+.+|.||.+++|+||||+|++|++|+++|||+|+|+++. .++. .++.|+|+|++++|+.|+.+|
T Consensus 77 ~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~------~~~~~~~~~v~I~G~~~~v~~A~~~I 150 (163)
T 3krm_A 77 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ------TPDENDQVIVKIIGHFYASQMAQRKI 150 (163)
T ss_dssp SCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC------CCCTTSEEEEEEEECHHHHHHHHHHH
T ss_pred cccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC------CCCCCCceEEEEEeCHHHHHHHHHHH
Confidence 123456789999999999999999999999999999999998642 1233 445899999999999999999
Q ss_pred HHHHhcCC
Q 046946 551 QSFMTSGQ 558 (650)
Q Consensus 551 ~~~i~~~~ 558 (650)
.+++.+.+
T Consensus 151 ~~~i~~~~ 158 (163)
T 3krm_A 151 RDILAQVK 158 (163)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99997643
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.88 E-value=2.9e-23 Score=200.94 Aligned_cols=152 Identities=22% Similarity=0.325 Sum_probs=120.7
Q ss_pred eeEEEEEecCCccceecccCccchhchhhhcCceEEecCC---CCCCCccEEEEeccCCCcCccchHHHHHHHHhhhccc
Q 046946 397 EFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDA---PTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE 473 (650)
Q Consensus 397 ~~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~~ 473 (650)
+++++|+||...+|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|+.+.+. .+.+.|..+......
T Consensus 5 ~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~---~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 5 QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALN---AVHGFIAEKIREMPQ 81 (178)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHH---HHHHHHHHHHTCCCC
T ss_pred CEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHH---HHHHHHHHHHhccCC
Confidence 7899999999999999999999999999999999999864 3467899999999864332 222333322221110
Q ss_pred c----------------ccCCceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEE
Q 046946 474 F----------------SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIR 537 (650)
Q Consensus 474 ~----------------~~~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~ 537 (650)
. ..+...+.+|.||.+++|+||||+|++||+|+++|||+|+|.+.. ..++..++.|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~-----~~~~~~~~~v~I~ 156 (178)
T 2anr_A 82 NVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP-----DGINLQNRVVTVS 156 (178)
T ss_dssp C-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC---------CCEEEEEEE
T ss_pred ccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC-----CCCCCCceEEEEE
Confidence 0 012347889999999999999999999999999999999998642 2245678999999
Q ss_pred cCHHHHHHHHHHHHHHHhc
Q 046946 538 GSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 538 G~~e~V~~A~~lI~~~i~~ 556 (650)
|++++|+.|+.+|.++|.+
T Consensus 157 G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 157 GEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999965
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=1.1e-22 Score=214.95 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=161.1
Q ss_pred CCCCceEEEEEEcCCccceeecCCc--hHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHH
Q 046946 235 NENSTITARLLVPNNMVGCLLGKRG--DVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312 (650)
Q Consensus 235 ~~~~~vt~~llVP~~~vg~IIGk~G--~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l 312 (650)
.....+|.++.||..+|+.||||+| ++|++|+++|||+|+|+..+............|+|+|.+++|++|+.+|.+++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 4467899999999999999999999 99999999999999997533000111234568999999999999999998854
Q ss_pred ccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 046946 313 HQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMG 392 (650)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~yg~~~~~~~~~~~~~~~~~~~~ 392 (650)
.
T Consensus 105 P------------------------------------------------------------------------------- 105 (376)
T 3n89_A 105 H------------------------------------------------------------------------------- 105 (376)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCceeEEEEEecCCccceecccCccchhchhhhcCceEEecCCCC--CCCccEEEEeccCCCcCccchHHHHHHHHhhh
Q 046946 393 EVSAEFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPT--DSDERVIRASAFEGLWNPRSQTIDAILQLQNK 470 (650)
Q Consensus 393 ~~~~~~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~~~--~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~ 470 (650)
+++.+.+|...++. ...+..|.+ ++..+++|.++.... +.....|+|+|.+..++ .+.+|+..+.+.
T Consensus 106 -----l~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~---~akeA~~~Ll~~ 174 (376)
T 3n89_A 106 -----FTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQH---ELIEAAKRLNEI 174 (376)
T ss_dssp -----EEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHH---HHHHHHHHHHHH
T ss_pred -----ceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHH---HHHHHHHHHHHH
Confidence 23444444432221 111233444 567899999865421 11356899999985443 444555554444
Q ss_pred cccc--ccCCceEEEEEeCCCCceeEecCCC--chHHHHHHhcCCeEEEeCCccccCCCC-CCCCceEEEEEcCHHHHHH
Q 046946 471 TSEF--SEKGTITTRLLVPSSKVGCILGQGG--HVINEMRRRTQADIRVVGARVKLQDPH-PGSSECIVDIRGSSEHLIS 545 (650)
Q Consensus 471 i~~~--~~~~~~~~~l~VP~~~vG~IIGkgG--~~IkeI~~~TGA~I~i~~~~~~l~~p~-~~~~er~V~I~G~~e~V~~ 545 (650)
+.+. .....++..|.|+..+|..||||+| ..|++|+++|||+|+++... ++. .......|+|+|+.++|..
T Consensus 175 l~~~e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~----d~~d~~~~~~~ItItGs~e~V~~ 250 (376)
T 3n89_A 175 LFRESPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYN----NRNETRGNIYEIKVVGNIDNVLK 250 (376)
T ss_dssp HCC--CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC-------------CCEEEEEEESCHHHHHH
T ss_pred HHhhhcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCC----CcccccCCceEEEEEeCHHHHHH
Confidence 4332 2345789999999999999999999 66799999999999998642 111 1234678999999999999
Q ss_pred HHHHHHHHH
Q 046946 546 AHGTYQSFM 554 (650)
Q Consensus 546 A~~lI~~~i 554 (650)
|+++|+++|
T Consensus 251 Ark~I~~lL 259 (376)
T 3n89_A 251 ARRYIMDLL 259 (376)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhhC
Confidence 999999986
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=4.4e-23 Score=198.99 Aligned_cols=154 Identities=19% Similarity=0.350 Sum_probs=121.1
Q ss_pred eeEEEEEecCCccceecccCccchhchhhhcCceEEecCCCCCCCccEEEEeccCCCcCccchHHHHHHHHhhhcc----
Q 046946 397 EFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTS---- 472 (650)
Q Consensus 397 ~~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~---- 472 (650)
..+++|+||.+.+|.||||+|++|++|+++|||+|+|.+..+++.+|+|+|+|+.+.++.+...+..++.-...-.
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~ 81 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGP 81 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC-------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 3578999999999999999999999999999999999876667789999999997555433333333332211000
Q ss_pred ------------ccc---cCCceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEE
Q 046946 473 ------------EFS---EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIR 537 (650)
Q Consensus 473 ------------~~~---~~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~ 537 (650)
.|. .....+.+|.||.+++|+||||+|++||+|+++|||+|+|++.. ++..++.++.|+|+
T Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~----~~~~~~~~~~v~I~ 157 (174)
T 1j4w_A 82 GPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP----PPNADPNMKLFTIR 157 (174)
T ss_dssp ----------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC----TTTSCTTEEEEEEE
T ss_pred CCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC----CCCCCCCceEEEEE
Confidence 000 01246789999999999999999999999999999999999642 34456789999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 046946 538 GSSEHLISAHGTYQSFM 554 (650)
Q Consensus 538 G~~e~V~~A~~lI~~~i 554 (650)
|++++|+.|+.+|.++|
T Consensus 158 G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 158 GTPQQIDYARQLIEEKI 174 (174)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999875
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=6.1e-23 Score=195.22 Aligned_cols=149 Identities=28% Similarity=0.497 Sum_probs=120.6
Q ss_pred eeEEEEEecCCccceecccCccchhchhhhcCceEEecCCCCCCCccEEEEeccCCCcCccchHHHHHHHHh-hhcccc-
Q 046946 397 EFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQ-NKTSEF- 474 (650)
Q Consensus 397 ~~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~-~~i~~~- 474 (650)
.++++|+||...+|.||||+|++|++|+++|||+|++++. ++.+|+|+|+|+.+.+. .+...++... +.+...
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~---~A~~~I~~~i~e~~~~~~ 78 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIF---KAFAMIIDKLEEDISSSM 78 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHH---HHHHHHHHHHHHHHTSCC
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHH---HHHHHHHHHHHhhccccC
Confidence 6789999999999999999999999999999999999975 46799999999863332 2222222211 111110
Q ss_pred -----ccCCceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHH
Q 046946 475 -----SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGT 549 (650)
Q Consensus 475 -----~~~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~l 549 (650)
.....++.+|.||.+++|+||||+|++||+|+++|||+|+|++. +.++..++.|+|+|++++|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~------~~~~~~~~~v~I~G~~~~v~~A~~~ 152 (160)
T 2jzx_A 79 TNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD------MLPNSTERAITIAGIPQSIIECVKQ 152 (160)
T ss_dssp CSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC------CSTTCCEEEEEEEECHHHHHHHHHH
T ss_pred CCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC------CCCCCCceEEEEEcCHHHHHHHHHH
Confidence 12235789999999999999999999999999999999999853 2356789999999999999999999
Q ss_pred HHHHHhc
Q 046946 550 YQSFMTS 556 (650)
Q Consensus 550 I~~~i~~ 556 (650)
|.+++.+
T Consensus 153 I~~~i~e 159 (160)
T 2jzx_A 153 ICVVMLE 159 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999864
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=191.86 Aligned_cols=149 Identities=22% Similarity=0.336 Sum_probs=118.0
Q ss_pred eEEEEEecCCccceecccCccchhchhhhcCceEEecCCC--CCCCccEEEEeccCCCcCccchHHHHHHHHhhhccc--
Q 046946 398 FSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAP--TDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE-- 473 (650)
Q Consensus 398 ~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~~--~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~~-- 473 (650)
++++|+||...+|.||||+|++|++|+++|||+|++.+.. +++.+|+|+|+|+.+.+ ..+.+.|..+......
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v---~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKV---QQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHH---HHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHH---HHHHHHHHHHHHhccCCC
Confidence 4689999999999999999999999999999999997543 35678999999976332 2233333333222111
Q ss_pred c------ccCCceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHH
Q 046946 474 F------SEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAH 547 (650)
Q Consensus 474 ~------~~~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~ 547 (650)
+ ......+.+|.||.+++|+||||+|++||+|+++|||+|+|++.. +...++.|+|+|++++|+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~-------~~~~~~~v~I~G~~~~v~~A~ 151 (164)
T 2jvz_A 79 FGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-------GTGPEKIAHIMGPPDRCEHAA 151 (164)
T ss_dssp CSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC-------TTSSEEEEEEESCHHHHHHHH
T ss_pred CCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC-------CCCCcEEEEEEcCHHHHHHHH
Confidence 0 011134578999999999999999999999999999999998642 345689999999999999999
Q ss_pred HHHHHHHhc
Q 046946 548 GTYQSFMTS 556 (650)
Q Consensus 548 ~lI~~~i~~ 556 (650)
.+|.+++.+
T Consensus 152 ~~I~~~i~~ 160 (164)
T 2jvz_A 152 RIINDLLQS 160 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999865
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.80 E-value=5.3e-20 Score=194.51 Aligned_cols=292 Identities=11% Similarity=0.088 Sum_probs=177.0
Q ss_pred CCCceEEEEEecCccccceeccCc--hHHHHHHHHhCceEEEecCC-----CCCCceEEEEecChhhhhhccCCccchhh
Q 046946 124 QPADTVYRILCPSRKIGGVIGKAG--NIVKSLREETQAKITVADTI-----PGSEERVIIIYSSPTKIAKTQNKDDDSAA 196 (650)
Q Consensus 124 ~~~~~~~rilvP~~~vG~IIGKgG--~~Ik~Ir~~TgakI~I~~~~-----~g~~eRvI~I~G~~e~v~~a~~~~~~~~~ 196 (650)
....+++++.||...++.|||||| ++|++|+++|||+|+|++.. +......|+|+|.+++|++|
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~A--------- 96 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRA--------- 96 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHH---------
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHH---------
Confidence 345799999999999999999999 99999999999999999754 11344689999999887653
Q ss_pred hhhcccCCcccHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEc
Q 046946 197 ETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVL 276 (650)
Q Consensus 197 e~~~~~~~~~~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~ 276 (650)
..++.+. ..+++.+.+|...++. ...+..|.+ ++..+++|.+.
T Consensus 97 ----------------R~~I~~l------------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp 139 (376)
T 3n89_A 97 ----------------RMLMRRN------------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFV 139 (376)
T ss_dssp ----------------HHHHHHS------------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEE
T ss_pred ----------------HHHHHhc------------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeC
Confidence 2222221 1344556666543322 111334544 56789999986
Q ss_pred cCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 046946 277 PADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARN 356 (650)
Q Consensus 277 ~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 356 (650)
+.... .+.....|+|+|...+|.+|++++..+++.-.....
T Consensus 140 ~~~~~---~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~------------------------------------ 180 (376)
T 3n89_A 140 DAPEK---NGIVTTYLRITAREKNQHELIEAAKRLNEILFRESP------------------------------------ 180 (376)
T ss_dssp EEC--------CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--C------------------------------------
T ss_pred Ccccc---cCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhc------------------------------------
Confidence 53211 011245799999997776666665555543111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEecCCccceecccCcc--chhchhhhcCceEEec
Q 046946 357 SSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAGKIGGVIGKGGF--NVKQLQQETGASIHVE 434 (650)
Q Consensus 357 ~~~~~~~~~p~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iP~~~~g~IIGkgG~--~Ik~I~~~sga~I~i~ 434 (650)
.....+++.|.|+..++..|||++|. .|++|+++|||+|.++
T Consensus 181 ------------------------------------~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP 224 (376)
T 3n89_A 181 ------------------------------------APENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYP 224 (376)
T ss_dssp ------------------------------------CCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC
T ss_pred ------------------------------------ccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECC
Confidence 00114688999999999999999994 5599999999999999
Q ss_pred CCCCC----CCccEEEEeccCCCcCccchHHHHHHHHhhhccccccCCceEEEEEeCCCCceeEecCCCchHHHHHHhcC
Q 046946 435 DAPTD----SDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQ 510 (650)
Q Consensus 435 ~~~~~----~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TG 510 (650)
+.... .+...|+|+|+++.+ .+|..++.+.+ .+.+.+.++....-.-.-..-..|..+.++.+
T Consensus 225 ~~~d~~d~~~~~~~ItItGs~e~V------~~Ark~I~~lL-------Pv~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~ 291 (376)
T 3n89_A 225 CYNNRNETRGNIYEIKVVGNIDNV------LKARRYIMDLL-------PISMCFNIKNTDMAEPSRVSDRNIHMIIDESG 291 (376)
T ss_dssp ---------CCEEEEEEESCHHHH------HHHHHHHHHTS-------EEEEEEEEEGGGBC--------CBEEEECTTS
T ss_pred CCCCcccccCCceEEEEEeCHHHH------HHHHHHHHhhC-------CEEEEEecCCcccccccccchhHHHHHHHhcC
Confidence 65321 234589999998443 33333333322 33444444443222222222333444668899
Q ss_pred CeEEEeCCccccCCCCC----CCCceEEEEEcCH---HHHHHHHHHHHH
Q 046946 511 ADIRVVGARVKLQDPHP----GSSECIVDIRGSS---EHLISAHGTYQS 552 (650)
Q Consensus 511 A~I~i~~~~~~l~~p~~----~~~er~V~I~G~~---e~V~~A~~lI~~ 552 (650)
+.|.|-++.. .|.. +..-..|+|++.. .++-.|++.++.
T Consensus 292 v~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~e~n~~~~y~~~~~~l~ 337 (376)
T 3n89_A 292 IILKMTPSVY---EPADLLSGEVPLNCASLRSKEFNIKKLYTAYQKVLS 337 (376)
T ss_dssp CEEEEEEEEE---CCSSSSCCCEEEEEEEEEEEGGGHHHHHHHHHHHBC
T ss_pred eEEEEeecCC---CchhhcccccccceEEEEEEeccHHHHHHHHHHHhC
Confidence 9999987542 1111 1112567888754 444445444443
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.73 E-value=5.3e-18 Score=158.06 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=103.0
Q ss_pred ceEEEEEecCccccceeccCchHHHHHHHHhCceEEEecCCCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCcc
Q 046946 127 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPH 206 (650)
Q Consensus 127 ~~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~~ 206 (650)
.++.+++||.+.+|++|||+|++|++|++++| |++.+.. ..+++.+...++++++.+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~v~~-------------------- 59 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDAVKK-------------------- 59 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHHHHH--------------------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHHHHH--------------------
Confidence 47899999999999999999999999999999 5544322 234555555555554432
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCC-eEEEccCCCCCCCC
Q 046946 207 CAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGA-NIRVLPADRLPPCA 285 (650)
Q Consensus 207 ~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa-~I~i~~~~~~p~~~ 285 (650)
+.. +.+. .+.++.||.+++|++|||+|++||.|++.||| +|+|.+++....
T Consensus 60 ---------~~~-~l~~----------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~-- 111 (144)
T 2qnd_A 60 ---------ARS-FLEF----------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV-- 111 (144)
T ss_dssp ---------HHH-HHCE----------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--
T ss_pred ---------HHH-hhhc----------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--
Confidence 111 1110 13789999999999999999999999999997 999987433211
Q ss_pred CCCCc--eEEEecCHHHHHHHHHHHHHHHcc
Q 046946 286 MNTDE--MVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 286 ~~~dr--~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
...++ .|+|+|++++|++|+.+|.++|..
T Consensus 112 ~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 112 PQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp CCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred cccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 12344 489999999999999999999864
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.68 E-value=3.8e-17 Score=152.32 Aligned_cols=136 Identities=15% Similarity=0.241 Sum_probs=99.6
Q ss_pred eeEEEEEecCCccceecccCccchhchhhhcCceEEecCCCCCCCccEEEEec-cCCCcCccchHHHHHHHHhhhccccc
Q 046946 397 EFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASA-FEGLWNPRSQTIDAILQLQNKTSEFS 475 (650)
Q Consensus 397 ~~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~erii~I~G-~~~~~~~~~~~~~ai~~~~~~i~~~~ 475 (650)
.++.+++||.+.+|.+||++|++|++|++++|+.+..... ..+ .+++.+ +++.+ ..+..+.. +
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~---~~~-~~i~~~~~p~~v-------~~~~~~l~-~---- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE---DTC-TFHIYGEDQDAV-------KKARSFLE-F---- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET---TTT-EEEEEESSHHHH-------HHHHHHHC-E----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC---Cch-heeeccCCHHHH-------HHHHHhhh-c----
Confidence 4678999999999999999999999999999944333322 123 344444 44211 11111111 1
Q ss_pred cCCceEEEEEeCCCCceeEecCCCchHHHHHHhcCC-eEEEeCCccccCCCCCCCCc--eEEEEEcCHHHHHHHHHHHHH
Q 046946 476 EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQA-DIRVVGARVKLQDPHPGSSE--CIVDIRGSSEHLISAHGTYQS 552 (650)
Q Consensus 476 ~~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA-~I~i~~~~~~l~~p~~~~~e--r~V~I~G~~e~V~~A~~lI~~ 552 (650)
...++.||.+++|++|||+|++||+|++.||| +|+|.+.. +......+ ..|+|+|++++|+.|+.||.+
T Consensus 67 ----~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~----~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~ 138 (144)
T 2qnd_A 67 ----AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAEN----EKNVPQEEGMVPFVFVGTKDSIANATVLLDY 138 (144)
T ss_dssp ----EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEEC----TTCCCCCTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ----ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCC----CCCccccCCeeEEEEEeCHHHHHHHHHHHHH
Confidence 13789999999999999999999999999997 99999743 11111123 458999999999999999999
Q ss_pred HHhc
Q 046946 553 FMTS 556 (650)
Q Consensus 553 ~i~~ 556 (650)
+|.+
T Consensus 139 ~l~~ 142 (144)
T 2qnd_A 139 HLNY 142 (144)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9965
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.59 E-value=4.9e-15 Score=146.83 Aligned_cols=143 Identities=21% Similarity=0.291 Sum_probs=101.3
Q ss_pred eEEEEEecCccccceeccCchHHHHHHHHhCceEEEecCCCCCCceEEEEecCh-----hhhhhccCCccchhhhhhccc
Q 046946 128 TVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSP-----TKIAKTQNKDDDSAAETKKES 202 (650)
Q Consensus 128 ~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~~~g~~eRvI~I~G~~-----e~v~~a~~~~~~~~~e~~~~~ 202 (650)
-..++.||.+++|.|||++|++|+.|+++|||+|+|.. +++.|+|.++. +++.+|.+++.++....+
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~--- 105 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFS--- 105 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCC---
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCC---
Confidence 46789999999999999999999999999999999983 35678898863 444443333322110000
Q ss_pred CCcccHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEE-----c------CCccceeecCCchHHHHHHHHhCC
Q 046946 203 MEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLV-----P------NNMVGCLLGKRGDVIQRLRSETGA 271 (650)
Q Consensus 203 ~~~~~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llV-----P------~~~vg~IIGk~G~~Ik~I~~~tGa 271 (650)
...|. .+. . ++...-.+-+ + ...+|+||||+|++|+.|++.|||
T Consensus 106 ------~e~g~----------~ll-----~----dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~ 160 (219)
T 2e3u_A 106 ------PERAF----------RLL-----N----EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGA 160 (219)
T ss_dssp ------HHHHG----------GGG-----S----TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred ------ccccc----------eec-----c----CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCc
Confidence 00000 000 0 0111111222 2 126899999999999999999999
Q ss_pred eEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHccC
Q 046946 272 NIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN 315 (650)
Q Consensus 272 ~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~ 315 (650)
+|.|. ++.|.|.|+.++|+.|+.+|.+++...
T Consensus 161 ~I~v~------------~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 161 SVSVY------------GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp EEEEE------------TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred eEEEC------------CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 99996 467999999999999999999999764
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.53 E-value=5.4e-15 Score=146.49 Aligned_cols=140 Identities=16% Similarity=0.232 Sum_probs=100.6
Q ss_pred eEEEEEecCCccceecccCccchhchhhhcCceEEecCCCCCCCccEEEEeccCCCcCc--cchHHHHHHHHhhhc----
Q 046946 398 FSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNP--RSQTIDAILQLQNKT---- 471 (650)
Q Consensus 398 ~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~erii~I~G~~~~~~~--~~~~~~ai~~~~~~i---- 471 (650)
-..++.||.+.++.|||++|.+|+.|+++|||+|+++. +++.++|.++....+. ...+.+.|..+....
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~ 108 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPER 108 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccc
Confidence 35689999999999999999999999999999999963 3567889887522221 122222222222000
Q ss_pred -cccccCCceEEEEEeC-----C------CCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcC
Q 046946 472 -SEFSEKGTITTRLLVP-----S------SKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS 539 (650)
Q Consensus 472 -~~~~~~~~~~~~l~VP-----~------~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~ 539 (650)
..+-.++.....+.++ . ..+|+||||+|++||.|++.|||+|.|.. +.|+|.|+
T Consensus 109 g~~ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~--------------~~v~i~G~ 174 (219)
T 2e3u_A 109 AFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG--------------KTVAIIGN 174 (219)
T ss_dssp HGGGGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET--------------TEEEEEEC
T ss_pred cceeccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC--------------eEEEEEeC
Confidence 0000112222223333 2 26899999999999999999999999972 47999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 046946 540 SEHLISAHGTYQSFMTS 556 (650)
Q Consensus 540 ~e~V~~A~~lI~~~i~~ 556 (650)
+++++.|+.+|+++|.+
T Consensus 175 ~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999954
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.47 E-value=6e-14 Score=116.13 Aligned_cols=73 Identities=29% Similarity=0.367 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 480 ~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
.+.+|.||.+++|+||||+|++||+|++.|||+|+|++.. ++.+++.++.|+|+|++++++.|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~----~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKG----EFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTT----CCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCC----CCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999642 334567899999999999999999999999854
No 18
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.46 E-value=8.7e-14 Score=134.54 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=102.1
Q ss_pred EEEEEecCccccceeccCchHHHHHHHHhCceEEEecCCCCCCceEEEEe-----cChhhhhhccCCccchhhhhhcccC
Q 046946 129 VYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIY-----SSPTKIAKTQNKDDDSAAETKKESM 203 (650)
Q Consensus 129 ~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~~~g~~eRvI~I~-----G~~e~v~~a~~~~~~~~~e~~~~~~ 203 (650)
.++++||...+|.|||++|++++.|++++||+|+++ ..++.|+|. |++..+.+|.+++..+...-
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf----- 74 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF----- 74 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC-----
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC-----
Confidence 368999999999999999999999999999999998 347788888 66555555443332111000
Q ss_pred CcccHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEE-Ec----------CCccceeecCCchHHHHHHHHhCCe
Q 046946 204 EPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLL-VP----------NNMVGCLLGKRGDVIQRLRSETGAN 272 (650)
Q Consensus 204 ~~~~~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~ll-VP----------~~~vg~IIGk~G~~Ik~I~~~tGa~ 272 (650)
+..+|+ .+. ++...+.++ ++ ....|+||||+|.+|+.|++.|||+
T Consensus 75 ----~~e~A~-----~Ll---------------~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~ 130 (191)
T 1tua_A 75 ----PPEKAF-----RLL---------------EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTY 130 (191)
T ss_dssp ----CHHHHG-----GGG---------------STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCE
T ss_pred ----CHHHhh-----hcc---------------cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCce
Confidence 001110 000 011223322 33 2368999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 273 IRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 273 I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
|.|. ++.|.|.|+.++++.|+.+|.+++..
T Consensus 131 I~v~------------~~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 131 INVG------------EYEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EEEC------------SSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred EEEc------------CCEEEEEeChHHHHHHHHHHHHHHcC
Confidence 9996 34799999999999999999999975
No 19
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=6.9e-14 Score=123.53 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=65.2
Q ss_pred EEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 046946 481 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSG 557 (650)
Q Consensus 481 ~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~~ 557 (650)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.++. ++..+..+++|+|+|++++|++|+.+|.++|.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~----~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL----PPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC----CTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc----CCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999999999999999999999642 2334567899999999999999999999999663
No 20
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=5.5e-14 Score=118.17 Aligned_cols=75 Identities=31% Similarity=0.491 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSG 557 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~~ 557 (650)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|... .++..++.|+|+|+++++++|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-------~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-------VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-------CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999999852 25678999999999999999999999999765
Q ss_pred CC
Q 046946 558 QS 559 (650)
Q Consensus 558 ~~ 559 (650)
+.
T Consensus 77 ~~ 78 (82)
T 1wvn_A 77 KG 78 (82)
T ss_dssp --
T ss_pred hc
Confidence 33
No 21
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.44 E-value=1.4e-13 Score=115.70 Aligned_cols=72 Identities=28% Similarity=0.508 Sum_probs=65.4
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|+.. .++..++.|+|+|++++|+.|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-------TSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC-------CCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999842 2566889999999999999999999999865
No 22
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.44 E-value=6.8e-14 Score=115.84 Aligned_cols=73 Identities=32% Similarity=0.533 Sum_probs=66.2
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSG 557 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~~ 557 (650)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|.. +.+++.++.|+|+|++++++.|+.+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~-------~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN-------PVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC-------CCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC-------CCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 3567899999999999999999999999999999999985 236678999999999999999999999999653
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.43 E-value=7.6e-14 Score=114.59 Aligned_cols=70 Identities=26% Similarity=0.459 Sum_probs=64.1
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
..++.+|+||.+.+|+||||||++||+|+++|||+|+|++. +..+|+|+|+|+++++..|+.+|.++|.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~---------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS---------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC---------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999999999999999852 34789999999999999999999999864
No 24
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.40 E-value=2.4e-13 Score=114.17 Aligned_cols=62 Identities=29% Similarity=0.537 Sum_probs=57.0
Q ss_pred CceEEEEEecCccccceeccCchHHHHHHHHhCceEEEecCCCCCCceEEEEecChhhhhhc
Q 046946 126 ADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKT 187 (650)
Q Consensus 126 ~~~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~~~g~~eRvI~I~G~~e~v~~a 187 (650)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+..+++++|+|+|+|+++++.+|
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A 66 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 66 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHH
Confidence 36899999999999999999999999999999999999987788899999999998876553
No 25
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.39 E-value=3.7e-13 Score=110.45 Aligned_cols=70 Identities=27% Similarity=0.536 Sum_probs=64.4
Q ss_pred CceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 238 STITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 238 ~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. +..+|.|+|+|++++|.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999853 14589999999999999999999999976
No 26
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.39 E-value=3.4e-13 Score=115.85 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSG 557 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~~ 557 (650)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|.... .+..++.|+|+|++++|++|+.+|.+++.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-------~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-------GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-------TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-------CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999999998532 4567899999999999999999999999764
No 27
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=115.76 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|++.+ ++++|+|+|+++++++|+++|.+++..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~----------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD----------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS----------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC----------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999998532 468999999999999999999998754
No 28
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=1.8e-13 Score=116.39 Aligned_cols=73 Identities=29% Similarity=0.367 Sum_probs=65.7
Q ss_pred eEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 480 ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 480 ~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
.+.+|.||.+++|+||||+|++|++|++.|||+|+|++.. ++.+++.++.|+|+|++++++.|+.+|.+++.+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~----~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKG----EFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTT----CBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCC----CCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999642 233567899999999999999999999999875
No 29
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.37 E-value=2.3e-13 Score=116.19 Aligned_cols=72 Identities=28% Similarity=0.508 Sum_probs=65.6
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|+.. .++.+++.|+|+|+++++++|+.+|.+++.+
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-------~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC-------CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC-------CCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999842 2566899999999999999999999999865
No 30
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.36 E-value=1.1e-12 Score=110.10 Aligned_cols=73 Identities=29% Similarity=0.560 Sum_probs=64.9
Q ss_pred CceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHccC
Q 046946 238 STITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN 315 (650)
Q Consensus 238 ~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~ 315 (650)
..++.+|+||.+++|+||||+|++|++|+++|||+|+|... ++...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999852 23467999999999999999999999999875
No 31
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=110.13 Aligned_cols=73 Identities=15% Similarity=0.361 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMT 555 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~ 555 (650)
.....+|.||.+++|+||||+|++||+|+++|||+|+|..+. ......+|.|+|+|++++++.|+.+|.+++.
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~-----~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-----SQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSS-----CSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCC-----CCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999999643 1135678999999999999999999999884
No 32
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.35 E-value=8.7e-13 Score=109.14 Aligned_cols=72 Identities=29% Similarity=0.579 Sum_probs=65.4
Q ss_pred CceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 238 STITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 238 ~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
..++.+|+||.+++|+||||+|++|++|+++|||+|+|... ++...++.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999842 2346799999999999999999999999975
No 33
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=8.6e-13 Score=116.07 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=63.7
Q ss_pred ceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 046946 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSG 557 (650)
Q Consensus 479 ~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~~ 557 (650)
..+.+|.||.+++|+||||+|++||+|+++|||+|+|.++. ....+|.|+|+|+++++++|+++|++++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-------~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-------GTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-------SSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-------CCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34679999999999999999999999999999999998532 3457899999999999999999999999763
No 34
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.34 E-value=1.7e-12 Score=107.27 Aligned_cols=73 Identities=27% Similarity=0.457 Sum_probs=63.8
Q ss_pred eEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 240 vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
.+++|.||.+.+|+||||+|++|++|+++|||+|+|.+++.. +.+..++.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999864221 2246789999999999999999999998864
No 35
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.34 E-value=3.4e-13 Score=115.13 Aligned_cols=63 Identities=29% Similarity=0.520 Sum_probs=57.5
Q ss_pred CCceEEEEEecCccccceeccCchHHHHHHHHhCceEEEecCCCCCCceEEEEecChhhhhhc
Q 046946 125 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKT 187 (650)
Q Consensus 125 ~~~~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~~~g~~eRvI~I~G~~e~v~~a 187 (650)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.+..+++++|+|+|+|+++++.+|
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A 73 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 73 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHH
Confidence 346999999999999999999999999999999999999987788899999999998876553
No 36
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.33 E-value=4.3e-13 Score=129.68 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=101.9
Q ss_pred EEEEEecCCccceecccCccchhchhhhcCceEEecCCCCCCCccEEEEeccCCCcC-----ccchHHHHHHHHhhhccc
Q 046946 399 SMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWN-----PRSQTIDAILQLQNKTSE 473 (650)
Q Consensus 399 ~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~erii~I~G~~~~~~-----~~~~~~~ai~~~~~~i~~ 473 (650)
.+++.||.+.+|.|||++|++++.|++.+|++|+++. .++.++|..+....+ .+...+.++.+-++.-..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHh
Confidence 3689999999999999999999999999999999963 567888885443333 233334444432211000
Q ss_pred --cccCCceEEEEEeC----------CCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHH
Q 046946 474 --FSEKGTITTRLLVP----------SSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSE 541 (650)
Q Consensus 474 --~~~~~~~~~~l~VP----------~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e 541 (650)
+-+++.....+.++ ....|+||||+|.+|+.|+..|||+|.|.. +.|.|.|+++
T Consensus 80 ~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~--------------~~v~i~G~~~ 145 (191)
T 1tua_A 80 FRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE--------------YEVAIIGDYE 145 (191)
T ss_dssp GGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS--------------SEEEEEEEHH
T ss_pred hhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC--------------CEEEEEeChH
Confidence 00122222234343 235899999999999999999999999962 3899999999
Q ss_pred HHHHHHHHHHHHHhc
Q 046946 542 HLISAHGTYQSFMTS 556 (650)
Q Consensus 542 ~V~~A~~lI~~~i~~ 556 (650)
+++.|+..|+++|..
T Consensus 146 ~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 146 RAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999953
No 37
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.32 E-value=1.1e-12 Score=113.15 Aligned_cols=74 Identities=19% Similarity=0.459 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|.++. +.....+|.|+|+|++++|+.|+.+|.+++.+
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-----PQNTGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSC-----CCSSCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCC-----CCCCCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999643 11234789999999999999999999999965
No 38
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.31 E-value=5.4e-12 Score=106.65 Aligned_cols=75 Identities=21% Similarity=0.448 Sum_probs=65.3
Q ss_pred CCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 237 ~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
....+.+|.||.+.+|+||||+|++||+|+++|||+|.|..+... ....+|.|+|+|++++|++|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 345778999999999999999999999999999999999863321 236789999999999999999999998853
No 39
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.30 E-value=3.1e-12 Score=112.37 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=65.6
Q ss_pred CCceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 477 ~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|.+.. +.....++.|+|+|++++++.|+.+|.+++.+
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES-----EGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSS-----CCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCC-----CCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999998642 11134689999999999999999999999965
No 40
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.28 E-value=4.8e-12 Score=108.62 Aligned_cols=74 Identities=24% Similarity=0.522 Sum_probs=66.6
Q ss_pred CCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHccC
Q 046946 237 NSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN 315 (650)
Q Consensus 237 ~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~ 315 (650)
...++.+|.||.+.+|+||||+|++|++|+++|||+|+|..+. ....++.|+|+|++++|++|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-----GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999999998532 1356899999999999999999999999874
No 41
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.28 E-value=5e-12 Score=108.94 Aligned_cols=77 Identities=19% Similarity=0.430 Sum_probs=67.6
Q ss_pred CCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 235 ~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
.....++.+|+||.+.+|+||||+|++||+|+++|||+|.|..+.... ...+|.|+|+|++++|++|+.+|.+++.+
T Consensus 10 ~~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 10 DGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 345778999999999999999999999999999999999998532211 24689999999999999999999999976
No 42
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=4e-12 Score=107.97 Aligned_cols=73 Identities=27% Similarity=0.457 Sum_probs=64.5
Q ss_pred eEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 240 vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
++++|+||.+.+|+||||+|++|++|+++|||+|.|..++.. +.+..++.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999864221 1246789999999999999999999999976
No 43
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.7e-12 Score=107.81 Aligned_cols=71 Identities=23% Similarity=0.405 Sum_probs=63.9
Q ss_pred CCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 236 ~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
....++.+|.||.+.+|+||||+|++||+|+++|||+|+|.+. ..++.|+|+|++++|++|+.+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999999999852 2368999999999999999999998764
No 44
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=9.8e-12 Score=109.68 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=63.8
Q ss_pred EEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHccC
Q 046946 241 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN 315 (650)
Q Consensus 241 t~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~ 315 (650)
+++|+||.+++|+||||+|++||+|+++|||+|+|..+. .+ .....++.|+|+|+.++|++|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 679999999999999999999999999999999998532 22 12346799999999999999999999999874
No 45
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=7.7e-12 Score=109.98 Aligned_cols=71 Identities=23% Similarity=0.481 Sum_probs=63.4
Q ss_pred eEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHccC
Q 046946 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN 315 (650)
Q Consensus 240 vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~ 315 (650)
.+++|+||.+.+++||||+|++||+|+++|||+|+|.+++. ...+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 46799999999999999999999999999999999985332 256899999999999999999999999873
No 46
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.24 E-value=6.1e-12 Score=102.57 Aligned_cols=67 Identities=12% Similarity=0.236 Sum_probs=60.3
Q ss_pred ceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 046946 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFM 554 (650)
Q Consensus 479 ~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i 554 (650)
..+.+|.||.+++|.|||+||++|++|+++|||+|+|+.. +..++.|+|+|+.++++.|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~---------g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD---------SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC---------CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC---------CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999853 236789999999999999999999874
No 47
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=7.6e-12 Score=107.79 Aligned_cols=70 Identities=13% Similarity=0.288 Sum_probs=62.9
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
..++.+|.||.+++|.|||+||++||+|+++|||+|+|+.. +..++.|+|+|+++++++|+.+|.+++.+
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~---------~~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP---------DDPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT---------TSSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC---------CCCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999852 22457999999999999999999999865
No 48
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=1.5e-11 Score=106.55 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
..++.+|.||.++||.||||+|++|++|+++|||+|+|+... .+...++.|+|+|+.++++.|+.+|.+++..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g------~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKD------DGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTT------TCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCC------CCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999998542 1334678999999999999999999998864
No 49
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.21 E-value=2.7e-11 Score=106.34 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=67.1
Q ss_pred CCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHccC
Q 046946 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN 315 (650)
Q Consensus 236 ~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~ 315 (650)
....++.+|+||.+.+|+||||+|++||+|+++|||+|+|...... ....++.|+|+|+.++|++|+.+|.+++.+.
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG---TLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC---SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC---CCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 4467889999999999999999999999999999999999853221 1245899999999999999999999999764
Q ss_pred C
Q 046946 316 P 316 (650)
Q Consensus 316 ~ 316 (650)
+
T Consensus 88 ~ 88 (104)
T 1we8_A 88 E 88 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 50
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=1.6e-11 Score=105.81 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=63.5
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
..++.+|.||.+++|+|||++|++||+|+++|||+|+|+... ...++.|+|+|.++++++|+++|.+++.+
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g--------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG--------APDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT--------CSCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC--------CCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999998532 23467999999999999999999999865
No 51
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=8.2e-11 Score=101.39 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=65.4
Q ss_pred CCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 235 ~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
.....++.+|.||.++++.|||++|++||+|+++|||+|+|..++. ..++.|+|+|.+++|++|+.+|.+++.+
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999974321 2467899999999999999999999876
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.14 E-value=4.4e-11 Score=97.50 Aligned_cols=68 Identities=21% Similarity=0.399 Sum_probs=60.5
Q ss_pred CceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHH
Q 046946 238 STITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 312 (650)
Q Consensus 238 ~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l 312 (650)
...+.+|.||.++++.|||++|++|++|+++|||+|.|..++ ..++.|+|+|+.++|++|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999998532 24689999999999999999998864
No 53
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=5.4e-11 Score=102.45 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=65.4
Q ss_pred CCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHccC
Q 046946 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQN 315 (650)
Q Consensus 236 ~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~ 315 (650)
....++.+|.||.+.+|.|||++|++||+|+++|||+|.|...+ ..++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 34578999999999999999999999999999999999997422 23578999999999999999999999774
Q ss_pred C
Q 046946 316 P 316 (650)
Q Consensus 316 ~ 316 (650)
.
T Consensus 86 ~ 86 (94)
T 2cte_A 86 D 86 (94)
T ss_dssp H
T ss_pred c
Confidence 3
No 54
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.11 E-value=3.7e-11 Score=105.34 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
...+.+|.||.+++|+|||+||++||+|+++|||+|+|+.. +...+.|+|+|+.++++.|+.+|.+++.+
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~---------g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP---------ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT---------TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC---------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 35788999999999999999999999999999999999853 22456999999999999999999998864
No 55
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.11 E-value=1.1e-10 Score=100.92 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=63.6
Q ss_pred ceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 239 ~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
..++.|.||.+.++.|||++|++|++|+++|||+|.|..++. + ...++.|+|+|..++|.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999985332 2 23678999999999999999999999865
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=1.9e-10 Score=100.33 Aligned_cols=65 Identities=11% Similarity=0.312 Sum_probs=59.8
Q ss_pred eEEEEEEcCCccceeecCCchHHHHHHHH-hCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 240 ITARLLVPNNMVGCLLGKRGDVIQRLRSE-TGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 240 vt~~llVP~~~vg~IIGk~G~~Ik~I~~~-tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
++.+|.||..+|+.|||++|++|++|+++ ++++|.|+. .++.|+|+|+++.|++|+.+|..++.+
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999997 599999873 356899999999999999999999976
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=3.6e-11 Score=104.96 Aligned_cols=66 Identities=15% Similarity=0.297 Sum_probs=59.8
Q ss_pred ceEEEEEeCCCCceeEecCCCchHHHHHHh-cCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 479 TITTRLLVPSSKVGCILGQGGHVINEMRRR-TQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 479 ~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~-TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
.++.+|.||..+|+.|||++|++||+|+++ ++++|+|++ .++.|+|+|.+++|++|+.+|++++++
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------~~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE------------GEDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS------------SSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC------------CCCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999997 589999884 356999999999999999999999865
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.99 E-value=3.7e-10 Score=98.91 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=61.9
Q ss_pred ceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 239 TITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 239 ~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
+++..|.||.+.++.|||++|++||+|+++|||+|.|..++ ...+.|+|+|..++|++|+.+|.+++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999999999999999998532 2346899999999999999999999865
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=2.9e-10 Score=97.84 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=63.1
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhc-CCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRT-QADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~T-GA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~~ 556 (650)
+.++..|.||.++++.|||++|.+||+|+++| ||+|+|+. .++..+.|+|.|..++|++|+++|++++.+
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~---------~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV---------EGSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC---------TTTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC---------CCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999999999999999 99999984 234567999999999999999999999865
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.91 E-value=1.3e-09 Score=93.75 Aligned_cols=73 Identities=18% Similarity=0.342 Sum_probs=65.0
Q ss_pred CCCCceEEEEEEcCCccceeecCCchHHHHHHHHh-CCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHc
Q 046946 235 NENSTITARLLVPNNMVGCLLGKRGDVIQRLRSET-GANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLH 313 (650)
Q Consensus 235 ~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~ 313 (650)
..++.++..|.||.++++.|||++|++||+|+++| ||+|.|..++ +..+.|+|+|..++|++|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-------SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-------TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999999999999 9999997421 346689999999999999999999997
Q ss_pred c
Q 046946 314 Q 314 (650)
Q Consensus 314 ~ 314 (650)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.66 E-value=1.1e-08 Score=86.59 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=58.4
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCe-EEEeCCccccCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQAD-IRVVGARVKLQDPHPGSSECIVDIRG-SSEHLISAHGTYQSFM 554 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~-I~i~~~~~~l~~p~~~~~er~V~I~G-~~e~V~~A~~lI~~~i 554 (650)
..+...+.||.+++|.|||++|++||+|+++|||+ |.|.. ++..|+|.| +.+++++|+.+|..+-
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e------------ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE------------DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET------------TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc------------CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 45778999999999999999999999999999998 99972 348999999 8999999999998764
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.56 E-value=5e-08 Score=82.57 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=59.1
Q ss_pred CCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCe-EEEccCCCCCCCCCCCCceEEEec-CHHHHHHHHHHHHHHHc
Q 046946 236 ENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGAN-IRVLPADRLPPCAMNTDEMVQISG-KPNVAKRALYEVSTLLH 313 (650)
Q Consensus 236 ~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~-I~i~~~~~~p~~~~~~dr~V~I~G-~~~~V~~A~~~I~~~l~ 313 (650)
....+...|.||.+.++.|||++|.+|++|+++|||+ |.|.. .+..|+|.| +.+++++|+.+|..+-+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 3456788999999999999999999999999999998 99962 357899999 79999999999876544
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=4.7e-07 Score=80.74 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=57.4
Q ss_pred ceEEEEEeCCC-------CceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCC---CCCCceEEEEEc-CHHHHHHHH
Q 046946 479 TITTRLLVPSS-------KVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPH---PGSSECIVDIRG-SSEHLISAH 547 (650)
Q Consensus 479 ~~~~~l~VP~~-------~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~---~~~~er~V~I~G-~~e~V~~A~ 547 (650)
.++.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..+.-..-++. ...++-.|.|.+ +.+++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 34567777754 7899999999999999999999999985420000000 112344677776 699999999
Q ss_pred HHHHHHHhc
Q 046946 548 GTYQSFMTS 556 (650)
Q Consensus 548 ~lI~~~i~~ 556 (650)
++|.+++..
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999864
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.37 E-value=9.3e-07 Score=80.35 Aligned_cols=77 Identities=18% Similarity=0.414 Sum_probs=61.6
Q ss_pred CceEEEEEEcCC------ccceeecCCchHHHHHHHHhCCeEEEccCCCCCC-----------CCCCCCceEEEecC-HH
Q 046946 238 STITARLLVPNN------MVGCLLGKRGDVIQRLRSETGANIRVLPADRLPP-----------CAMNTDEMVQISGK-PN 299 (650)
Q Consensus 238 ~~vt~~llVP~~------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~-----------~~~~~dr~V~I~G~-~~ 299 (650)
..++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|..++.... -....+-.|.|+++ .+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457889999988 8889999999999999999999999975321110 01123557889996 88
Q ss_pred HHHHHHHHHHHHHcc
Q 046946 300 VAKRALYEVSTLLHQ 314 (650)
Q Consensus 300 ~V~~A~~~I~~~l~~ 314 (650)
.+.+|+.+|.+++..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999975
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.37 E-value=7.7e-07 Score=80.89 Aligned_cols=77 Identities=13% Similarity=0.324 Sum_probs=60.9
Q ss_pred ceEEEEEeCCC------CceeEecCCCchHHHHHHhcCCeEEEeCCccccCCC---------C-CCCCceEEEEEc-CHH
Q 046946 479 TITTRLLVPSS------KVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDP---------H-PGSSECIVDIRG-SSE 541 (650)
Q Consensus 479 ~~~~~l~VP~~------~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p---------~-~~~~er~V~I~G-~~e 541 (650)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.- ..+. . ....+-.|.|++ +.+
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS-~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGS-VKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTT-SSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcc-cccccccccccccccccCCCeEEEEEECCHH
Confidence 45778999988 8899999999999999999999999986420 0010 0 112356788999 689
Q ss_pred HHHHHHHHHHHHHhc
Q 046946 542 HLISAHGTYQSFMTS 556 (650)
Q Consensus 542 ~V~~A~~lI~~~i~~ 556 (650)
.+++|+++|.+++..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999965
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.9e-06 Score=76.75 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=58.8
Q ss_pred CceEEEEEEcCC-------ccceeecCCchHHHHHHHHhCCeEEEccCCCC-----CCCCCCCCceEEEecC-HHHHHHH
Q 046946 238 STITARLLVPNN-------MVGCLLGKRGDVIQRLRSETGANIRVLPADRL-----PPCAMNTDEMVQISGK-PNVAKRA 304 (650)
Q Consensus 238 ~~vt~~llVP~~-------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~-----p~~~~~~dr~V~I~G~-~~~V~~A 304 (650)
..++.+|.||-+ .+|.|||++|.+||+|+++|||+|.|..++.. ..-....+-.|.|++. .+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 457788888865 78999999999999999999999999743110 0000113346888876 8999999
Q ss_pred HHHHHHHHcc
Q 046946 305 LYEVSTLLHQ 314 (650)
Q Consensus 305 ~~~I~~~l~~ 314 (650)
+.+|.+++..
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999975
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.98 E-value=8e-06 Score=74.63 Aligned_cols=75 Identities=35% Similarity=0.434 Sum_probs=56.2
Q ss_pred eEEEEEEcCCc------cceeecCCchHHHHHHHHhCCeEEEccCCCCCC------------CC-CCCCceEEEecC-H-
Q 046946 240 ITARLLVPNNM------VGCLLGKRGDVIQRLRSETGANIRVLPADRLPP------------CA-MNTDEMVQISGK-P- 298 (650)
Q Consensus 240 vt~~llVP~~~------vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~------------~~-~~~dr~V~I~G~-~- 298 (650)
++.+|.||-+. +|.|||++|.++|+|+++|||+|.|..+..... .+ ...+-.|.|++. .
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 46788888654 899999999999999999999999986432110 00 112236889985 3
Q ss_pred ----HHHHHHHHHHHHHHcc
Q 046946 299 ----NVAKRALYEVSTLLHQ 314 (650)
Q Consensus 299 ----~~V~~A~~~I~~~l~~ 314 (650)
..+.+|+.+|.++|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 2799999999999964
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.95 E-value=5.8e-06 Score=75.57 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=55.5
Q ss_pred eEEEEEeCCC------CceeEecCCCchHHHHHHhcCCeEEEeCCccccCC----------CC-CCC-CceEEEEEcC-H
Q 046946 480 ITTRLLVPSS------KVGCILGQGGHVINEMRRRTQADIRVVGARVKLQD----------PH-PGS-SECIVDIRGS-S 540 (650)
Q Consensus 480 ~~~~l~VP~~------~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~----------p~-~~~-~er~V~I~G~-~ 540 (650)
++.+|.||.+ ++|.|||++|.++|+|+++|||+|.|..+.- ..+ |. ... .+=-|.|++. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS-~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~ 80 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGS-MRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA 80 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTS-SCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCC-cccccccccccCCCCccccCCCcEEEEEecCc
Confidence 4567888865 4999999999999999999999999997540 000 00 011 1226778884 4
Q ss_pred H-----HHHHHHHHHHHHHhc
Q 046946 541 E-----HLISAHGTYQSFMTS 556 (650)
Q Consensus 541 e-----~V~~A~~lI~~~i~~ 556 (650)
+ .+++|+++|.+++..
T Consensus 81 ~~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 81 QNRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHHHHHHCCC
Confidence 3 799999999999853
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.68 E-value=1.2e-05 Score=90.96 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=56.3
Q ss_pred CCceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 046946 477 KGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGS-SEHLISAHGTYQSFM 554 (650)
Q Consensus 477 ~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~-~e~V~~A~~lI~~~i 554 (650)
.......+.||.+++|.|||+||.+||+|+++|||+|.|. ++..|.|.|. .+.+++|+++|.+++
T Consensus 564 ~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-------------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 564 NGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-------------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp TCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-------------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred cCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-------------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3466788999999999999999999999999999999987 3578999995 688999999998765
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.60 E-value=7.6e-05 Score=84.57 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCC
Q 046946 209 AQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288 (650)
Q Consensus 209 a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~ 288 (650)
|.+++..+++.+.+.-. .. ........+....+.||.+.++.|||++|++||+|+++|||+|.|..
T Consensus 539 A~~g~~~I~~~m~~al~-~~--~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d----------- 604 (630)
T 3u1k_A 539 ASVAKKEILQIMNKTIS-KP--RASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD----------- 604 (630)
T ss_dssp HHHHHHHHHHHHHHHCS-SC--CSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------
T ss_pred HHHHHHHHHHHHHHHHH-HH--HhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----------
Confidence 56666666666554311 11 11222345667899999999999999999999999999999999962
Q ss_pred CceEEEecC-HHHHHHHHHHHHHHH
Q 046946 289 DEMVQISGK-PNVAKRALYEVSTLL 312 (650)
Q Consensus 289 dr~V~I~G~-~~~V~~A~~~I~~~l 312 (650)
+..|.|.|. .+.+++|+.+|.+++
T Consensus 605 ~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 605 EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 467999997 688999999987764
No 71
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.56 E-value=2.7e-05 Score=71.59 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=73.5
Q ss_pred eEEEEEecCccccceeccCchHHHHHHHHhCceEEEecCCCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCccc
Q 046946 128 TVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPHC 207 (650)
Q Consensus 128 ~~~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI~I~~~~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~~~ 207 (650)
-.+.++|+...+|..||++|++|+.|+++.|-+|.|.+...+ ++.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-----------~~~------------------------ 80 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-----------LER------------------------ 80 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-----------HHH------------------------
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-----------HHH------------------------
Confidence 457789999999999999999999999999999998864211 110
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEc
Q 046946 208 AAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVL 276 (650)
Q Consensus 208 ~a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~ 276 (650)
-+...+.-.... ... ....++...+.+.||.++.+..|||+|++++-..+-||.+|.|.
T Consensus 81 -------fI~naLsPA~V~-~V~--i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 81 -------IVKNLFPGVKIE-SIN--VRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp -------HHHHHSTTSCEE-EEE--EEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred -------HHHHhcCCceEE-EEE--EeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 000000000000 000 00002356788999999999999999999999999999988775
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.43 E-value=0.00018 Score=64.46 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred EEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 046946 482 TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMT 555 (650)
Q Consensus 482 ~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~ 555 (650)
..+.|.+..++.|||++|+.|++|+..|++.|+|..-+ .+....|+|.|.+..-..|+.+|+.+..
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~--------s~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG--------PERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC--------TTSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC--------CCCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999532 2367889999999999999999988764
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.17 E-value=0.00072 Score=60.62 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=58.8
Q ss_pred EEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 242 ARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 242 ~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
..+.|...+++.|+|++|+.|+.|+..|.+.|++..-+. +..-.|+|.|++..-.+|+.+|..+.+-
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999985321 3466799999999999999999988754
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.03 E-value=0.00017 Score=82.55 Aligned_cols=66 Identities=20% Similarity=0.372 Sum_probs=13.1
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG-SSEHLISAHGTYQSFMTS 556 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G-~~e~V~~A~~lI~~~i~~ 556 (650)
......+.||.++++.|||+||.+||+|.++||++|.|. ++..|.|.+ +.+.+++|+.+|..++..
T Consensus 568 ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-------------ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 568 APKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-------------DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp CCC--------------------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred CCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-------------CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 355678999999999999999999999999999999886 346788888 589999999999988753
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.99 E-value=9.8e-05 Score=67.86 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=72.5
Q ss_pred eEEEEEecCCccceecccCccchhchhhhcCceEEecCCCCCCCccEEEEeccCCCcCccchHHHHHHHHhhhcccc--c
Q 046946 398 FSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEF--S 475 (650)
Q Consensus 398 ~~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~~~--~ 475 (650)
-.+.+.|+...+|..||++|++|+.|.++.|-+|.+-.-.. +....+.++ +.-.+ +... .
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~----------------d~~~fI~na-LsPA~-V~~V~i~ 97 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS----------------DLERIVKNL-FPGVK-IESINVR 97 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS----------------SHHHHHHHH-STTSC-EEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC----------------CHHHHHHHh-cCCce-EEEEEEe
Confidence 36789999999999999999999999999999988754321 000111111 11000 1000 0
Q ss_pred -cCCceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEe
Q 046946 476 -EKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVV 516 (650)
Q Consensus 476 -~~~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~ 516 (650)
.++.....+.||.+..+..|||+|.+++-..+-||.+|.|.
T Consensus 98 ~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 98 ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 13456678999999999999999999999999999888765
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.75 E-value=0.00084 Score=76.98 Aligned_cols=92 Identities=16% Similarity=0.286 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCC
Q 046946 209 AQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288 (650)
Q Consensus 209 a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~ 288 (650)
|.++...+++.+.+. +... ........+....+.||.+.++.|||++|.+||+|.++|||+|.|..
T Consensus 542 A~~g~~~I~~~m~~a-l~~~--r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d----------- 607 (726)
T 4aid_A 542 AKEGRAHILGEMNKA-MDAP--RADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND----------- 607 (726)
T ss_dssp HHHHHHHHHHHHHTT-CSSC--CSSCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-HHhh--hhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----------
Confidence 566667777665532 1111 11122334556788999999999999999999999999999999862
Q ss_pred CceEEEecC-HHHHHHHHHHHHHHHcc
Q 046946 289 DEMVQISGK-PNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 289 dr~V~I~G~-~~~V~~A~~~I~~~l~~ 314 (650)
+..|.|.+. .+.+++|+..|..++.+
T Consensus 608 dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 608 DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ------CCSCHHHHHHHHHC-------
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 456788776 88899999999998864
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.24 E-value=0.0037 Score=62.27 Aligned_cols=97 Identities=23% Similarity=0.301 Sum_probs=65.6
Q ss_pred ccccceeccCchHHHHH-HHHhCceEEEecCCCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCcccHHHHHHHH
Q 046946 137 RKIGGVIGKAGNIVKSL-REETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLK 215 (650)
Q Consensus 137 ~~vG~IIGKgG~~Ik~I-r~~TgakI~I~~~~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~~~~a~~Al~~ 215 (650)
+-+|.-||++|++|+.| ++-.|=+|.|.+...+ ++. -
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p~~-------------------------------f 163 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------PAR-------------------------------F 163 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------HHH-------------------------------H
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-----------HHH-------------------------------H
Confidence 55899999999999999 6777899998864311 100 0
Q ss_pred HHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCC
Q 046946 216 VHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAD 279 (650)
Q Consensus 216 v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~ 279 (650)
+...+.-. ....-....+....+.+.||..+.+.-|||+|++++.-.+-||.+|.|....
T Consensus 164 i~nalsPA----~V~~V~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 164 VANALSPA----KVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp HHHHTTTS----CCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred HHhccCCc----ceEEEEEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 11111100 0000000001124688999999999999999999999999999999998643
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.13 E-value=0.0048 Score=64.90 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=66.5
Q ss_pred ccccceeccCchHHHHHHHHh-CceEEEecCCCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCcccHHHHHHHH
Q 046946 137 RKIGGVIGKAGNIVKSLREET-QAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLK 215 (650)
Q Consensus 137 ~~vG~IIGKgG~~Ik~Ir~~T-gakI~I~~~~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~~~~a~~Al~~ 215 (650)
+-+|..||++|++|+.|.++. |=+|.|.+...+ ++. .
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p~~-------------------------------f 286 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------PAR-------------------------------F 286 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------HHH-------------------------------H
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-----------HHH-------------------------------H
Confidence 568999999999999999999 899998864211 100 0
Q ss_pred HHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccC
Q 046946 216 VHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPA 278 (650)
Q Consensus 216 v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~ 278 (650)
+...+.-... .... . ..+....+.+.||..+.+..|||+|.+++-..+-||.+|.|...
T Consensus 287 i~nalsPA~V-~~V~--~-~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 287 VANALSPAKV-VSVS--V-IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp HHHHTTTSCC-SEEE--E-EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred HHHhcCCcce-eEEE--E-EcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 1111110000 0000 0 01123468999999999999999999999999999999999864
No 79
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.87 E-value=0.026 Score=59.14 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=65.2
Q ss_pred ccccceeccCchHHHHHHHHh-CceEEEecCCCCCCceEEEEecChhhhhhccCCccchhhhhhcccCCcccHHHHHHHH
Q 046946 137 RKIGGVIGKAGNIVKSLREET-QAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLK 215 (650)
Q Consensus 137 ~~vG~IIGKgG~~Ik~Ir~~T-gakI~I~~~~~g~~eRvI~I~G~~e~v~~a~~~~~~~~~e~~~~~~~~~~~a~~Al~~ 215 (650)
+-+|..||.+|.+|+.+.++. |=+|.|.+...+ ++ ..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-----------~~-------------------------------~f 282 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-----------PK-------------------------------QL 282 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-----------HH-------------------------------HH
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-----------HH-------------------------------HH
Confidence 568999999999999999998 788888754211 00 00
Q ss_pred HHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEcc
Q 046946 216 VHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLP 277 (650)
Q Consensus 216 v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~ 277 (650)
+...+.-. ....-....+....+.+.||..+.+.-|||+|++++.-..-||.+|.|.+
T Consensus 283 i~nal~Pa----~v~~v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 283 IANALAPA----TVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp HHHHTCSS----CCSEEEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred HHHhcCcc----EEEEEEEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 11111000 00000000122346889999999999999999999999999999999975
No 80
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.69 E-value=0.0064 Score=60.60 Aligned_cols=93 Identities=22% Similarity=0.325 Sum_probs=63.4
Q ss_pred ccceecccCccchhch-hhhcCceEEecCCCCCCCccEEEEeccCCCcCccchHHHHHHHHhhhcccc--ccCCceEEEE
Q 046946 408 KIGGVIGKGGFNVKQL-QQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEF--SEKGTITTRL 484 (650)
Q Consensus 408 ~~g~IIGkgG~~Ik~I-~~~sga~I~i~~~~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~~~--~~~~~~~~~l 484 (650)
-+|..||++|.+|+.| ++-.|-+|.|-.-.. +....+.+++. -. .+... .++......+
T Consensus 127 pvGacIG~~G~rI~~i~~eL~gekIDIi~~s~----------------dp~~fi~nals-PA-~V~~V~i~~~~~~~a~V 188 (251)
T 2asb_A 127 AKGACIGPMGQRVRNVMSELSGEKIDIIDYDD----------------DPARFVANALS-PA-KVVSVSVIDQTARAARV 188 (251)
T ss_dssp HHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS----------------SHHHHHHHHTT-TS-CCSEEEEEETTTTEEEE
T ss_pred HHHHHhCCCchHHHHHHHHhCCCeEEEEEecC----------------CHHHHHHhccC-Cc-ceEEEEEEcCCCcEEEE
Confidence 4899999999999999 566677777653221 11111112111 00 01000 1123356889
Q ss_pred EeCCCCceeEecCCCchHHHHHHhcCCeEEEeCC
Q 046946 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVGA 518 (650)
Q Consensus 485 ~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~ 518 (650)
.||....+.-|||+|.+|+--.+.||.+|.|...
T Consensus 189 ~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 189 VVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp EECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred EEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 9999999999999999999999999999999753
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.10 E-value=0.0099 Score=68.39 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=0.0
Q ss_pred CceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Q 046946 478 GTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG-SSEHLISAHGTYQSFMT 555 (650)
Q Consensus 478 ~~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G-~~e~V~~A~~lI~~~i~ 555 (650)
......+.||.++++.+||+||.+|++|.++||+.|.|. .+..|.|.+ +.+.+++|+.+|..++.
T Consensus 558 ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-------------~dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 558 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-------------DDGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CceEEEEEECHHHhcccccccceeeeeeehhhCceEEec-------------CCccEEEecCCHHHHHHHHHHHHHHhh
Confidence 355677899999999999999999999999999998776 245677776 46777888888877653
No 82
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=93.99 E-value=0.013 Score=61.67 Aligned_cols=94 Identities=22% Similarity=0.331 Sum_probs=65.3
Q ss_pred CccceecccCccchhchhhhc-CceEEecCCCCCCCccEEEEeccCCCcCccchHHHHHHHHhh--hccccccCCceEEE
Q 046946 407 GKIGGVIGKGGFNVKQLQQET-GASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQN--KTSEFSEKGTITTR 483 (650)
Q Consensus 407 ~~~g~IIGkgG~~Ik~I~~~s-ga~I~i~~~~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~--~i~~~~~~~~~~~~ 483 (650)
+-+|..||++|.+|+.|.++. |-+|.|-.-. + +....+.+++. -.+ .+.. .+.......
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s-------------~---dp~~fi~nals-PA~V~~V~~-~~~~~~~a~ 310 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD-------------D---DPARFVANALS-PAKVVSVSV-IDQTARAAR 310 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC-------------S---SHHHHHHHHTT-TSCCSEEEE-EETTTTEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC-------------C---CHHHHHHHhcC-CcceeEEEE-EcCCCcEEE
Confidence 458999999999999999998 7777764321 1 11111112111 000 0100 012345788
Q ss_pred EEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCC
Q 046946 484 LLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGA 518 (650)
Q Consensus 484 l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~ 518 (650)
+.||....+..|||+|.+++-..+-||.+|.|...
T Consensus 311 V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 311 VVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp EEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred EEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 99999999999999999999999999999999753
No 83
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.65 E-value=0.043 Score=63.08 Aligned_cols=91 Identities=23% Similarity=0.314 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCC
Q 046946 209 AQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288 (650)
Q Consensus 209 a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~ 288 (650)
|.++...+++.+.+. +... ........+....+.||.+.++.+||++|.+|++|.+++|+.|.|..
T Consensus 532 A~~~~~~I~~~m~~a-l~~~--~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~----------- 597 (723)
T 3cdi_A 532 AKGARLHILGVMEQA-INAP--RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED----------- 597 (723)
T ss_dssp HHHHHHHHHHHHHHH-CC--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-hhhc--chhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------
Confidence 556666666665542 1110 01112234556788899999999999999999999999999998852
Q ss_pred CceEEEecC-HHHHHHHHHHHHHHHc
Q 046946 289 DEMVQISGK-PNVAKRALYEVSTLLH 313 (650)
Q Consensus 289 dr~V~I~G~-~~~V~~A~~~I~~~l~ 313 (650)
+..|.|.+. .+.+++|+..|..++.
T Consensus 598 dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 598 DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp --------------------------
T ss_pred CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 456777765 5667888888777664
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.64 E-value=0.0084 Score=69.24 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q 046946 479 TITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRG-SSEHLISAHGTYQSFM 554 (650)
Q Consensus 479 ~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G-~~e~V~~A~~lI~~~i 554 (650)
.....+.||.+++|.+||++|.+||+|.+.+|+.|.|. .+..|.|+. +.+..+.|+.+|..+.
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~-------------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE-------------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CBCCCC------------------CTTCCCCCSCC---------------------CCCBSSHHHHCC---------
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCCEEEec-------------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 44567889999999999999999999999999999776 245777777 4677777877777654
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=91.83 E-value=0.054 Score=56.69 Aligned_cols=92 Identities=24% Similarity=0.420 Sum_probs=63.0
Q ss_pred ccceecccCccchhchhhhc-CceEEecCCCCCCCccEEEEeccCCCcCccchHHHHHHHHhhhccc--cccCCceEEEE
Q 046946 408 KIGGVIGKGGFNVKQLQQET-GASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSE--FSEKGTITTRL 484 (650)
Q Consensus 408 ~~g~IIGkgG~~Ik~I~~~s-ga~I~i~~~~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~~--~~~~~~~~~~l 484 (650)
-+|..||.+|.+|+.+.++. |-+|.+-.-. + +.+..+.+++. -. ++.. ..++......+
T Consensus 246 pvGacvg~~G~ri~~i~~el~ge~Idii~~s-------------~---d~~~fi~nal~-Pa-~v~~v~~~d~~~~~~~v 307 (344)
T 1hh2_P 246 PIGACIGEGGSRIAAILKELKGEKLDVLKWS-------------D---DPKQLIANALA-PA-TVIEVEILDKENKAARV 307 (344)
T ss_dssp HHHHHHCTTSTTHHHHHHHTTTCEEEEEECC-------------S---SHHHHHHHHTC-SS-CCSEEEEEETTTTEEEE
T ss_pred ccceeeccCCcEeHHHHHHhCCCeeeEEecC-------------C---CHHHHHHHhcC-cc-EEEEEEEEcCCCCEEEE
Confidence 48999999999999999998 5666554221 1 11111222210 00 0000 00123456889
Q ss_pred EeCCCCceeEecCCCchHHHHHHhcCCeEEEeC
Q 046946 485 LVPSSKVGCILGQGGHVINEMRRRTQADIRVVG 517 (650)
Q Consensus 485 ~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~ 517 (650)
.||....+.-|||+|.+++--.+.||.+|.|..
T Consensus 308 ~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 308 LVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 999999999999999999999999999999864
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.96 E-value=0.029 Score=64.80 Aligned_cols=89 Identities=22% Similarity=0.373 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCceEEEEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCC
Q 046946 209 AQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNT 288 (650)
Q Consensus 209 a~~Al~~v~~~i~e~~~~~~~~~~~~~~~~~vt~~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~ 288 (650)
|.++...+++.+.+. +... .......+....+.||.+.++.+||++|.+||+|.+++|+.|.|..
T Consensus 571 A~~~~~~I~~~m~~a-l~~~---~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~----------- 635 (757)
T 1e3p_A 571 ARDARLHILDVMMEA-IDTP---DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED----------- 635 (757)
T ss_dssp HHHHHHHHHHHHHHH-CSSC---CCCCTTSCBCCCC------------------CTTCCCCCSCC---------------
T ss_pred HHHHHHHHHHHHHHH-hccc---ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------
Confidence 566666666666543 2111 1112223444567899999999999999999999999999998862
Q ss_pred CceEEEecC-HHHHHHHHHHHHHHH
Q 046946 289 DEMVQISGK-PNVAKRALYEVSTLL 312 (650)
Q Consensus 289 dr~V~I~G~-~~~V~~A~~~I~~~l 312 (650)
+..|.|.+. .+..++|+..|..+.
T Consensus 636 dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 636 DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ----CCCBSSHHHHCC---------
T ss_pred CceEEEecCCHHHHHHHHHHHHHhc
Confidence 445677665 666777777776654
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=68.95 E-value=2.3 Score=39.02 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=24.4
Q ss_pred EEEEEecCccccceeccCchHHHHHHHHh
Q 046946 129 VYRILCPSRKIGGVIGKAGNIVKSLREET 157 (650)
Q Consensus 129 ~~rilvP~~~vG~IIGKgG~~Ik~Ir~~T 157 (650)
++.+-+-.+..|.||||.|+|++.|+--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 35566678899999999999999999655
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=64.76 E-value=2.7 Score=35.25 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=23.3
Q ss_pred EEEEEecCccccceeccCchHHHHHHHH
Q 046946 129 VYRILCPSRKIGGVIGKAGNIVKSLREE 156 (650)
Q Consensus 129 ~~rilvP~~~vG~IIGKgG~~Ik~Ir~~ 156 (650)
..++.|....-|.||||+|+.|++|+++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 3566777888999999999999998765
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=47.02 E-value=6 Score=36.26 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=25.5
Q ss_pred EEEEEecCCccceecccCccchhchhhhcC
Q 046946 399 SMKILCSAGKIGGVIGKGGFNVKQLQQETG 428 (650)
Q Consensus 399 ~~~v~iP~~~~g~IIGkgG~~Ik~I~~~sg 428 (650)
++.+.+..+..|.+|||.|+|++.||--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 567778899999999999999999887553
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=43.47 E-value=9.4 Score=31.83 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=22.0
Q ss_pred EEEEEcCCccceeecCCchHHHHHHHH
Q 046946 242 ARLLVPNNMVGCLLGKRGDVIQRLRSE 268 (650)
Q Consensus 242 ~~llVP~~~vg~IIGk~G~~Ik~I~~~ 268 (650)
+++.|....-|.|||++|+.|++|+.+
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 566777777899999999999888654
No 91
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=39.73 E-value=1.8e+02 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=21.7
Q ss_pred CCCceEEEecCHHHHHHHHHHHHHHHcc
Q 046946 287 NTDEMVQISGKPNVAKRALYEVSTLLHQ 314 (650)
Q Consensus 287 ~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 314 (650)
.++-.+.|+|-+++|.+-+..-.++|..
T Consensus 121 gn~l~i~itgvpeqvrkelakeaerl~~ 148 (170)
T 4hhu_A 121 GNRLVIVITGVPEQVRKELAKEAERLKA 148 (170)
T ss_dssp SSEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 3466799999999999877666666654
No 92
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=34.07 E-value=13 Score=36.26 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=25.6
Q ss_pred EEEEecCccccceeccCchHHHHHHHHhCceE
Q 046946 130 YRILCPSRKIGGVIGKAGNIVKSLREETQAKI 161 (650)
Q Consensus 130 ~rilvP~~~vG~IIGKgG~~Ik~Ir~~TgakI 161 (650)
+.+.+..+..|.||||.|+++..||.-+..-+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 44556677899999999999999998776433
No 93
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=32.69 E-value=15 Score=36.12 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=23.4
Q ss_pred EEEEecCccccceeccCchHHHHHHHHh
Q 046946 130 YRILCPSRKIGGVIGKAGNIVKSLREET 157 (650)
Q Consensus 130 ~rilvP~~~vG~IIGKgG~~Ik~Ir~~T 157 (650)
.+|.|....-|.|||++|+.|++|+++.
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5667778889999999999999887653
No 94
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.33 E-value=15 Score=35.39 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.9
Q ss_pred EEEEecCccccceeccCchHHHHHHHH
Q 046946 130 YRILCPSRKIGGVIGKAGNIVKSLREE 156 (650)
Q Consensus 130 ~rilvP~~~vG~IIGKgG~~Ik~Ir~~ 156 (650)
.++.|....-|.|||++|+.|++|+++
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 455666778899999999999998754
No 95
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=30.47 E-value=20 Score=35.27 Aligned_cols=29 Identities=28% Similarity=0.182 Sum_probs=24.0
Q ss_pred EEEEEecCccccceeccCchHHHHHHHHh
Q 046946 129 VYRILCPSRKIGGVIGKAGNIVKSLREET 157 (650)
Q Consensus 129 ~~rilvP~~~vG~IIGKgG~~Ik~Ir~~T 157 (650)
..+|.|....-|.|||++|+.|++|+++.
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 35667777889999999999999988653
No 96
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=30.02 E-value=22 Score=35.99 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=28.3
Q ss_pred ceEEEEEecC-ccccceeccCchHHHHHHHH--------hCceEEEe
Q 046946 127 DTVYRILCPS-RKIGGVIGKAGNIVKSLREE--------TQAKITVA 164 (650)
Q Consensus 127 ~~~~rilvP~-~~vG~IIGKgG~~Ik~Ir~~--------TgakI~I~ 164 (650)
.+...|+|.. ++-+.||||+|+.||+|..+ .|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 3556667774 47788999999999987643 67777765
No 97
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.14 E-value=15 Score=35.75 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=24.2
Q ss_pred EEEEEecCccccceeccCchHHHHHHHHh
Q 046946 129 VYRILCPSRKIGGVIGKAGNIVKSLREET 157 (650)
Q Consensus 129 ~~rilvP~~~vG~IIGKgG~~Ik~Ir~~T 157 (650)
..++.|....-|.|||++|+.|++|+++.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 45677788899999999999999987653
No 98
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=27.88 E-value=26 Score=35.48 Aligned_cols=37 Identities=16% Similarity=0.455 Sum_probs=27.8
Q ss_pred ceEEEEEEcCC-ccceeecCCchHHHHHHHH--------hCCeEEE
Q 046946 239 TITARLLVPNN-MVGCLLGKRGDVIQRLRSE--------TGANIRV 275 (650)
Q Consensus 239 ~vt~~llVP~~-~vg~IIGk~G~~Ik~I~~~--------tGa~I~i 275 (650)
.+...++|..+ +.+.||||+|++||+|..+ .|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 46677788865 6688999999999987544 5566655
No 99
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.08 E-value=1.1e+02 Score=29.63 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=44.2
Q ss_pred EEEEcCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCCCceEEEecCHHHHHHHHHHHHHH
Q 046946 243 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTL 311 (650)
Q Consensus 243 ~llVP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~dr~V~I~G~~~~V~~A~~~I~~~ 311 (650)
-+-++...+.+++|+++..++.|.+.+++.|-+-. .-.|=|.++......+..+|...
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHHHHH
Confidence 45788899999999999999999999999998842 23466888876555555555443
No 100
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=25.53 E-value=17 Score=35.03 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEecCccccceeccCchHHHHHHHH
Q 046946 131 RILCPSRKIGGVIGKAGNIVKSLREE 156 (650)
Q Consensus 131 rilvP~~~vG~IIGKgG~~Ik~Ir~~ 156 (650)
++.|....-|.|||++|+.|++|+++
T Consensus 64 ~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 64 RVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp CCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEECCCCccccCcchHHHHHHHH
Confidence 34555678899999999999988754
No 101
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.98 E-value=19 Score=35.49 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=24.0
Q ss_pred EEEEEecCccccceeccCchHHHHHHHHh
Q 046946 129 VYRILCPSRKIGGVIGKAGNIVKSLREET 157 (650)
Q Consensus 129 ~~rilvP~~~vG~IIGKgG~~Ik~Ir~~T 157 (650)
..++.|....-|.|||++|+.|++|+++.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 45566777889999999999999988753
No 102
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=24.51 E-value=20 Score=35.22 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=24.8
Q ss_pred ceEEEEEeCCCCceeEecCCCchHHHHHHh
Q 046946 479 TITTRLLVPSSKVGCILGQGGHVINEMRRR 508 (650)
Q Consensus 479 ~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~ 508 (650)
...+++.|-...-|.|||++|+.|++|+..
T Consensus 43 ~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 43 PTKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SSCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CCeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 345678888889999999999999988653
No 103
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=23.51 E-value=3.5e+02 Score=23.21 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=57.0
Q ss_pred cchhchhhhcCceEEecCCCCCCCccEEEEeccCCCcCccchHHHHHHHHhhhccccccCCceEEEEEeCCCCce-eEec
Q 046946 418 FNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSKVG-CILG 496 (650)
Q Consensus 418 ~~Ik~I~~~sga~I~i~~~~~~~~erii~I~G~~~~~~~~~~~~~ai~~~~~~i~~~~~~~~~~~~l~VP~~~vG-~IIG 496 (650)
+.|++-++..|.-.-.-+ .+.-+|.|+|-++++ .+.+....+++.. +-.++++..|--+-.| +.|-
T Consensus 22 emirqarkfagtvtytl~----gn~l~i~itgvpeqv------rkelakeaerl~~---efni~v~y~imgsgsgvm~i~ 88 (170)
T 4hhu_A 22 EMIRQARKFAGTVTYTLS----GNRLVIVITGVPEQV------RKELAKEAERLKA---EFNINVQYQIMGSGSGVMVIV 88 (170)
T ss_dssp HHHHHHHHTTCEEEEEEE----TTEEEEEEESCCHHH------HHHHHHHHHHHHH---HHTCEEEEEEECTTCCEEEEE
T ss_pred HHHHHHHhhcceEEEEEe----CCEEEEEEeCCcHHH------HHHHHHHHHHHHH---hcceEEEEEEEeCCceEEEEE
Confidence 456777777775432222 245589999988433 2333322222221 1123344433333222 3344
Q ss_pred CCCc-----------hHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 046946 497 QGGH-----------VINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMT 555 (650)
Q Consensus 497 kgG~-----------~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~i~ 555 (650)
-.|. .|++-++-.|.--... +.++-.|.|+|-|+||.+-...=.+.+.
T Consensus 89 f~gddlea~ekalkemirqarkfagtvtytl-----------~gn~l~i~itgvpeqvrkelakeaerl~ 147 (170)
T 4hhu_A 89 FEGDDLEALEKALKEMIRQARKFAGTVTYTL-----------SGNRLVIVITGVPEQVRKELAKEAERLK 147 (170)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHTTCEEEEEE-----------CSSEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHHHHHHHHhhcceEEEEE-----------eCCEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 4443 3444444445322111 2245689999999999875544444443
No 104
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=23.35 E-value=19 Score=35.26 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEecCccccceeccCchHHHHHHHH
Q 046946 131 RILCPSRKIGGVIGKAGNIVKSLREE 156 (650)
Q Consensus 131 rilvP~~~vG~IIGKgG~~Ik~Ir~~ 156 (650)
+|.|....-|.|||++|+.|++|+++
T Consensus 65 ~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 65 RVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp CCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEECCCCccccCcchHHHHHHHH
Confidence 44556678899999999999988754
No 105
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.49 E-value=21 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=25.1
Q ss_pred ceEEEEEeCCCCceeEecCCCchHHHHHHh
Q 046946 479 TITTRLLVPSSKVGCILGQGGHVINEMRRR 508 (650)
Q Consensus 479 ~~~~~l~VP~~~vG~IIGkgG~~IkeI~~~ 508 (650)
...+++.|-...-|.|||++|+.|++|+..
T Consensus 43 ~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 43 PMRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TTEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CCcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 445778888999999999999999987653
No 106
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.60 E-value=20 Score=34.59 Aligned_cols=28 Identities=29% Similarity=0.704 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCceeEecCCCchHHHHHH
Q 046946 480 ITTRLLVPSSKVGCILGQGGHVINEMRR 507 (650)
Q Consensus 480 ~~~~l~VP~~~vG~IIGkgG~~IkeI~~ 507 (650)
..+++.|-...-|.|||++|+.|++|+.
T Consensus 40 ~~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 40 LGTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp SCCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3467778888889999999999998754
No 107
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=21.35 E-value=77 Score=30.73 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=45.8
Q ss_pred EEEEeCCCCceeEecCCCchHHHHHHhcCCeEEEeCCccccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 046946 482 TRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSF 553 (650)
Q Consensus 482 ~~l~VP~~~vG~IIGkgG~~IkeI~~~TGA~I~i~~~~~~l~~p~~~~~er~V~I~G~~e~V~~A~~lI~~~ 553 (650)
+-+.++...+.+++|+++..++.|.+.+++.|-+-.+ ..|=|.++......+...|...
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N-------------G~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN-------------GLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT-------------SEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC-------------cEEEEeCCchhHHHHHHHHHHH
Confidence 3468899999999999999999999999999987632 3566888877555555555443
No 108
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=21.31 E-value=29 Score=34.14 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEecCccccceeccCchHHHHHHHH
Q 046946 132 ILCPSRKIGGVIGKAGNIVKSLREE 156 (650)
Q Consensus 132 ilvP~~~vG~IIGKgG~~Ik~Ir~~ 156 (650)
|.|....-|.|||++|+.|++|+++
T Consensus 66 I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 66 VTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEeCCCcceecCCchHHHHHHHH
Confidence 4455677899999999999998865
No 109
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.28 E-value=25 Score=34.14 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=20.6
Q ss_pred EEecCccccceeccCchHHHHHHHHh
Q 046946 132 ILCPSRKIGGVIGKAGNIVKSLREET 157 (650)
Q Consensus 132 ilvP~~~vG~IIGKgG~~Ik~Ir~~T 157 (650)
+.|....-|.||||+|+.|++|+++-
T Consensus 74 I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 74 VIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp CEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEecCCCcEecCCcHHHHHHHHHH
Confidence 44555777999999999999988654
Done!