BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046948
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 110/168 (65%), Gaps = 17/168 (10%)
Query: 25 PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
PGFRF+PTDEEL+ YL RK S++LI +ID+YK DPW LP + + E YFF
Sbjct: 19 PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 78
Query: 85 RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
R RKY N RPNRV GSG+WKATG DK + ++G +G+KK LV+Y G A KGTKT+
Sbjct: 79 RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR----VGIKKALVFYIGKAPKGTKTN 134
Query: 145 WMMNEFRL--PSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRK 190
W+M+E+RL PS R+G+T + + W +CR++K+ S++K
Sbjct: 135 WIMHEYRLIEPS-RRNGSTKLDD----------WVLCRIYKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 110/168 (65%), Gaps = 17/168 (10%)
Query: 25 PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
PGFRF+PTDEEL+ YL RK S++LI +ID+YK DPW LP + + E YFF
Sbjct: 22 PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 81
Query: 85 RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
R RKY N RPNRV GSG+WKATG DK + ++G +G+KK LV+Y G A KGTKT+
Sbjct: 82 RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR----VGIKKALVFYIGKAPKGTKTN 137
Query: 145 WMMNEFRL--PSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRK 190
W+M+E+RL PS R+G+T + + W +CR++K+ S++K
Sbjct: 138 WIMHEYRLIEPS-RRNGSTKLDD----------WVLCRIYKKQSSAQK 174
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 102/170 (60%), Gaps = 8/170 (4%)
Query: 16 DHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTP 75
D EA+ PGFRFHPTD+ELV YL RK + L + +I ++D+YK DPWDLP+ +
Sbjct: 8 DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG 67
Query: 76 DNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRG 135
E YFF R RKY N RPNR G+G+WKATG DKPV G +G+KK LV+Y G
Sbjct: 68 AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG----RTLGIKKALVFYAG 123
Query: 136 TAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRN 185
A +G KTDW+M+E+RL R+ + + W +CR++ +
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRL----DDWVLCRLYNKK 169
>pdb|1C6V|A Chain A, Siv Integrase (Catalytic Domain + Dna Biding Domain
Comprising Residues 50-293) Mutant With Phe 185 Replaced
By His (F185h)
pdb|1C6V|B Chain B, Siv Integrase (Catalytic Domain + Dna Biding Domain
Comprising Residues 50-293) Mutant With Phe 185 Replaced
By His (F185h)
pdb|1C6V|C Chain C, Siv Integrase (Catalytic Domain + Dna Biding Domain
Comprising Residues 50-293) Mutant With Phe 185 Replaced
By His (F185h)
pdb|1C6V|D Chain D, Siv Integrase (Catalytic Domain + Dna Biding Domain
Comprising Residues 50-293) Mutant With Phe 185 Replaced
By His (F185h)
Length = 164
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 233 PGIHRHTDNLKPTAVHQINEISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELF 292
P H HTDN A ++ ++ ++ +E G +P NP +S + H N +
Sbjct: 60 PITHLHTDNGANFASQEVKMVAWWAGIEHTFG-VPYNP-QSQGVVEAMNHHLKNQIDRIR 117
Query: 293 TQENWDELRSVVEFALECPN 312
Q N + ++V A+ C N
Sbjct: 118 EQAN--SVETIVLMAVHCMN 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,625,552
Number of Sequences: 62578
Number of extensions: 460563
Number of successful extensions: 1082
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1073
Number of HSP's gapped (non-prelim): 5
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)