Query 046948
Match_columns 315
No_of_seqs 193 out of 954
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 9.7E-55 3.3E-59 383.3 13.5 160 17-189 11-170 (171)
2 3ulx_A Stress-induced transcri 100.0 1.8E-54 6.1E-59 382.4 15.0 162 17-186 9-170 (174)
3 1ldd_A APC2WHB, anaphase promo 22.4 47 0.0016 24.7 2.2 27 24-51 37-64 (74)
4 4dox_A Coat protein; all helix 15.0 69 0.0024 28.8 2.0 27 19-45 150-177 (226)
5 2jv2_A Putative uncharacterize 13.1 61 0.0021 24.5 0.9 43 16-62 10-54 (83)
6 1wpn_A Manganese-dependent ino 11.3 1.2E+02 0.0041 25.1 2.3 34 6-43 93-129 (188)
7 3cpr_A Dihydrodipicolinate syn 10.1 88 0.003 28.6 1.2 17 25-41 119-135 (304)
8 2jz2_A SSL0352 protein; SH3-li 9.3 50 0.0017 24.1 -0.7 19 286-304 30-48 (66)
9 3fkr_A L-2-keto-3-deoxyarabona 9.1 1.3E+02 0.0045 27.5 1.9 27 23-51 110-139 (309)
10 3dz1_A Dihydrodipicolinate syn 8.6 1.2E+02 0.0042 27.7 1.5 18 23-42 109-126 (313)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=9.7e-55 Score=383.25 Aligned_cols=160 Identities=47% Similarity=0.853 Sum_probs=132.6
Q ss_pred CccCCCCCCCceecCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCCcCCCCCceEEEEeecccccCCCCCCc
Q 046948 17 HEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPN 96 (315)
Q Consensus 17 ~~~~~~lpPGfRF~PTDeELV~~YL~~Ki~g~plp~~~I~~vDVY~~ePwdLp~~~~~ge~ewYFFs~r~rk~~~g~R~~ 96 (315)
..++..|||||||+|||||||.+||++|+.|.+++..+|+++|||++|||+||+.+..++++|||||++.+|+++|.|++
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccc
Confidence 34567899999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred ccccCceEeeecCceeEEcCCCCCceeeEEEEEEEeeeccCCCCCCcCeeEEEEeCCCCCCCCCCccCCCCCCCCCCCce
Q 046948 97 RVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVW 176 (315)
Q Consensus 97 R~tg~G~WK~~G~~k~I~~~~g~~~~vIG~Kktl~Fy~g~~~~g~kT~W~MhEY~L~~~~~~~~~~~p~~~~~~~~~e~~ 176 (315)
|+|++||||++|++++|... +.+||+||+|+||+|+++++.||+|+||||+|...... ......++|
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~----~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~---------~~~~~~~~~ 157 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTE----GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR---------NGSTKLDDW 157 (171)
T ss_dssp EEETTEEEEEEEEEEEEEET----TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------------CCE
T ss_pred ccCCCCEEeccCCCceEEec----CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc---------cCcccCCCE
Confidence 99999999999999999975 48999999999999999999999999999999987531 011345789
Q ss_pred EEEEEeeeCCCCC
Q 046948 177 TICRVFKRNVSSR 189 (315)
Q Consensus 177 VLCRIykk~~s~k 189 (315)
||||||+|+.+.+
T Consensus 158 VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 158 VLCRIYKKQSSAQ 170 (171)
T ss_dssp EEEEEEECC----
T ss_pred EEEEEEEcCCCCC
Confidence 9999999987654
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.8e-54 Score=382.35 Aligned_cols=162 Identities=46% Similarity=0.892 Sum_probs=135.9
Q ss_pred CccCCCCCCCceecCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCCcCCCCCceEEEEeecccccCCCCCCc
Q 046948 17 HEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPN 96 (315)
Q Consensus 17 ~~~~~~lpPGfRF~PTDeELV~~YL~~Ki~g~plp~~~I~~vDVY~~ePwdLp~~~~~ge~ewYFFs~r~rk~~~g~R~~ 96 (315)
.+.+..|||||||+|||||||.+||++|+.|.+++..+|+++|||++|||+||+.+..++.+|||||++.+||++|.|++
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence 34556789999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred ccccCceEeeecCceeEEcCCCCCceeeEEEEEEEeeeccCCCCCCcCeeEEEEeCCCCCCCCCCccCCCCCCCCCCCce
Q 046948 97 RVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVW 176 (315)
Q Consensus 97 R~tg~G~WK~~G~~k~I~~~~g~~~~vIG~Kktl~Fy~g~~~~g~kT~W~MhEY~L~~~~~~~~~~~p~~~~~~~~~e~~ 176 (315)
|+|++||||++|++++|... +.+||+||+|+||.|+++++.||+|+||||+|........ .+ .......++|
T Consensus 89 R~t~~G~WkatG~dk~I~~~----g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~---~~-~~~~~~~~~w 160 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPR----GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAA---GA-KKGSLRLDDW 160 (174)
T ss_dssp EEETTEEEEECSCCEEECCS----SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC---------------CCSSE
T ss_pred eecCCceEccCCCCcEEeeC----CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccc---cc-ccCCCCCCCE
Confidence 99999999999999999864 5899999999999999999999999999999998754210 00 1112356799
Q ss_pred EEEEEeeeCC
Q 046948 177 TICRVFKRNV 186 (315)
Q Consensus 177 VLCRIykk~~ 186 (315)
||||||+|+.
T Consensus 161 VlCrvf~K~~ 170 (174)
T 3ulx_A 161 VLCRLYNKKN 170 (174)
T ss_dssp EEEEEEESCC
T ss_pred EEEEEEEcCC
Confidence 9999999874
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=22.36 E-value=47 Score=24.75 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCCceecC-ChHHHHHHHHHHHHcCCCCC
Q 046948 24 LPGFRFHP-TDEELVGFYLRRKVDKKPLS 51 (315)
Q Consensus 24 pPGfRF~P-TDeELV~~YL~~Ki~g~plp 51 (315)
+.|+.|.. |++||-. ||.+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 45899998 8899888 699999877654
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=15.00 E-value=69 Score=28.79 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=18.4
Q ss_pred cCCCCCC-CceecCChHHHHHHHHHHHH
Q 046948 19 ADDRQLP-GFRFHPTDEELVGFYLRRKV 45 (315)
Q Consensus 19 ~~~~lpP-GfRF~PTDeELV~~YL~~Ki 45 (315)
+.-+.|+ |..+.||++|+|.+=..+++
T Consensus 150 ~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 150 PAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred ccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3345555 89999999999998544444
No 5
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=13.10 E-value=61 Score=24.47 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=26.4
Q ss_pred CCccCCCCCC--CceecCChHHHHHHHHHHHHcCCCCCCCceeeccCCC
Q 046948 16 DHEADDRQLP--GFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYK 62 (315)
Q Consensus 16 ~~~~~~~lpP--GfRF~PTDeELV~~YL~~Ki~g~plp~~~I~~vDVY~ 62 (315)
.++.-..|.| +.|| +..+ ..||++++.|.|+...-+..+++++
T Consensus 10 ~~A~kVvLAP~~~i~~---~~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 10 VIMSELKLKPLPKVEL---PPDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CCCCEEEEEESSSCCC---CHHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred eEEEEEEEcCCCceec---CccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 3444444444 3454 4555 4689999999998764444467654
No 6
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=11.27 E-value=1.2e+02 Score=25.12 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=20.6
Q ss_pred ccccccCCCCCCccCC---CCCCCceecCChHHHHHHHHHH
Q 046948 6 IKIDHHCYRDDHEADD---RQLPGFRFHPTDEELVGFYLRR 43 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~---~lpPGfRF~PTDeELV~~YL~~ 43 (315)
++||||..++...... ..++ .++--|||..+|+.
T Consensus 93 ivIDHH~~~~~~~~~~~~~~~~~----~~St~~lv~~~~~~ 129 (188)
T 1wpn_A 93 EVIDHHRIANFETAEPLYYRAEP----VGCTATILNKMYKE 129 (188)
T ss_dssp EEEECSCCCSCCCSSCCEEEECS----SSCHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCeEEEecc----ccHHHHHHHHHHHH
Confidence 4699999865321111 1112 35889999987764
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=10.13 E-value=88 Score=28.59 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=13.7
Q ss_pred CCceecCChHHHHHHHH
Q 046948 25 PGFRFHPTDEELVGFYL 41 (315)
Q Consensus 25 PGfRF~PTDeELV~~YL 41 (315)
|=|.|.||+++|+.||-
T Consensus 119 ~P~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 119 TPYYSKPSQEGLLAHFG 135 (304)
T ss_dssp CCCSSCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 44668999999999863
No 8
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=9.33 E-value=50 Score=24.09 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=14.2
Q ss_pred CCccccccCCChhhhhhhe
Q 046948 286 NDFHELFTQENWDELRSVV 304 (315)
Q Consensus 286 ~~~~~~~~~~~w~~~~~~~ 304 (315)
..+--+|.-+|||.|..+-
T Consensus 30 gkaaVLFEGGnWDKLVTf~ 48 (66)
T 2jz2_A 30 GKAAVLFENGNWDKLVTFR 48 (66)
T ss_dssp TEEEEEEESSSCEEEEEEE
T ss_pred CcEEEEecCCCceeEEEEE
Confidence 3456789999999886543
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=9.12 E-value=1.3e+02 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=17.2
Q ss_pred CCCCce---ecCChHHHHHHHHHHHHcCCCCC
Q 046948 23 QLPGFR---FHPTDEELVGFYLRRKVDKKPLS 51 (315)
Q Consensus 23 lpPGfR---F~PTDeELV~~YL~~Ki~g~plp 51 (315)
++| |. |.||+++|+.||-. -...-++|
T Consensus 110 ~~P-yy~~~~~~s~~~l~~~f~~-va~a~~lP 139 (309)
T 3fkr_A 110 MPP-YHGATFRVPEAQIFEFYAR-VSDAIAIP 139 (309)
T ss_dssp CCS-CBTTTBCCCHHHHHHHHHH-HHHHCSSC
T ss_pred cCC-CCccCCCCCHHHHHHHHHH-HHHhcCCC
Confidence 345 55 89999999997543 33333444
No 10
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=8.58 E-value=1.2e+02 Score=27.70 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=13.0
Q ss_pred CCCCceecCChHHHHHHHHH
Q 046948 23 QLPGFRFHPTDEELVGFYLR 42 (315)
Q Consensus 23 lpPGfRF~PTDeELV~~YL~ 42 (315)
++| | |.||+++|+.||-.
T Consensus 109 ~~P-~-~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APP-P-SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCC-T-TCCSHHHHHHHHHH
T ss_pred CCC-C-CCCCHHHHHHHHHH
Confidence 344 5 56999999997543
Done!