BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046950
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 149/255 (58%), Gaps = 22/255 (8%)
Query: 5 QDQGAKELFQGQAQLYKLMFNHLSSMSLKCAIELGIADIIHSHGRAITLS---------- 54
++ E+F+ QA LYK M+ + SMSLK +IE+ I +IIH+HG+ ITLS
Sbjct: 6 NNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPS 65
Query: 55 -------ELMRLLVHSGCFK---KTKVNGEEEAYGLTAASTLLIKDKPYCLSPTVSVFVD 104
LMR L H+G F+ ++ EEEAY LT AS LL+K CL+P V +D
Sbjct: 66 TKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVLD 125
Query: 105 PFFVAPFQSLSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVV 164
P F +L W ++TL+ G WEF+N+NP N +N+A+ASDS+++ +
Sbjct: 126 PTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMIN--LA 183
Query: 165 KSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 224
+C +FEGL S+VDVGGGNGT +II E FP + C V D P V NL ++NL Y+ G
Sbjct: 184 MKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGG 243
Query: 225 DMFRFIPPADAFLFK 239
DMF +P ADA L K
Sbjct: 244 DMFISVPKADAVLLK 258
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 203 bits (516), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 146/246 (59%), Gaps = 21/246 (8%)
Query: 11 ELFQGQAQLYKLMFNHLSSMSLKCAIELGIADIIHSHGRAITLS---------------- 54
E+F+ QA LYK ++ + SMSLK A+E+ I +II +HG+ I+LS
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 55 -ELMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQS 113
LMR L H+G F+ + EEE+Y LT AS LL++ CL+P V +DP +
Sbjct: 72 RRLMRYLAHNGFFEI--ITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHE 129
Query: 114 LSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFE 173
L W ++TL+ G FW+F+++NP N FN+AMASDS+++ + +C +F+
Sbjct: 130 LKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFD 187
Query: 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIPPA 233
GL S+VDVGGG GT ++II E FP +KC V D P V NL ++NL Y+ GDMF IP A
Sbjct: 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNA 247
Query: 234 DAFLFK 239
DA L K
Sbjct: 248 DAVLLK 253
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 142/246 (57%), Gaps = 21/246 (8%)
Query: 11 ELFQGQAQLYKLMFNHLSSMSLKCAIELGIADIIHSHGRAITLSELM------------- 57
E+F+ QA LYK ++ + S SLK A+E I +II +HG+ I+LS L+
Sbjct: 12 EIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 58 ----RLLVHSGCFKKTKVNGEEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQS 113
R L H+G F+ + EEE+Y LT AS LL++ CL+P V +DP +
Sbjct: 72 RRLXRYLAHNGFFEI--ITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLSGSYHE 129
Query: 114 LSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFE 173
L W ++TL+ G FW+F+++NP N FN+A ASDS+++ + +C +F+
Sbjct: 130 LKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLIN--LALRDCDFVFD 187
Query: 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIPPA 233
GL S+VDVGGG GT ++II E FP +KC V D P V NL ++NL Y+ GD F IP A
Sbjct: 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNA 247
Query: 234 DAFLFK 239
DA L K
Sbjct: 248 DAVLLK 253
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 150/255 (58%), Gaps = 28/255 (10%)
Query: 11 ELFQGQAQLYKLMFNHLSSMSLKCAIELGIADIIHSHGRAITLSEL-------------- 56
EL+ Q LYK ++N +SSM+LK A+ELGIAD IH+HG+ +TLSEL
Sbjct: 2 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 61
Query: 57 ---MRLLVHSGCFKKTKVNGEEE------AYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 107
+RLL H+G F KT V G+E AY LT S LLI KP CLS V + P
Sbjct: 62 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 121
Query: 108 VAPFQSLSSWF-KGTEITLWETVHGIKFWEFMNQNPAIN--QRFNEAMASDSEIMTTFVV 164
+ + S WF + E TL+E G FW+F+N++ + F +AMASDS + +V
Sbjct: 122 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LV 179
Query: 165 KSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 224
E K++FEGL SLVDVGGG G +++I E FP +KCTV D P V NL +NL ++ G
Sbjct: 180 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 239
Query: 225 DMFRFIPPADAFLFK 239
DMF+ IP ADA L K
Sbjct: 240 DMFKSIPSADAVLLK 254
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 150/255 (58%), Gaps = 28/255 (10%)
Query: 11 ELFQGQAQLYKLMFNHLSSMSLKCAIELGIADIIHSHGRAITLSEL-------------- 56
EL+ Q LYK ++N +SSM+LK A+ELGIAD IH+HG+ +TLSEL
Sbjct: 5 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 64
Query: 57 ---MRLLVHSGCFKKTKVNGEEE------AYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 107
+RLL H+G F KT V G+E AY LT S LLI KP CLS V + P
Sbjct: 65 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 124
Query: 108 VAPFQSLSSWF-KGTEITLWETVHGIKFWEFMNQNPAIN--QRFNEAMASDSEIMTTFVV 164
+ + S WF + E TL+E G FW+F+N++ + F +AMASDS + +V
Sbjct: 125 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LV 182
Query: 165 KSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 224
E K++FEGL SLVDVGGG G +++I E FP +KCTV D P V NL +NL ++ G
Sbjct: 183 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 242
Query: 225 DMFRFIPPADAFLFK 239
DMF+ IP ADA L K
Sbjct: 243 DMFKSIPSADAVLLK 257
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 150/255 (58%), Gaps = 28/255 (10%)
Query: 11 ELFQGQAQLYKLMFNHLSSMSLKCAIELGIADIIHSHGRAITLSEL-------------- 56
EL+ Q LYK ++N +SSM+LK A+ELGIAD IH+HG+ +TLSEL
Sbjct: 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 65
Query: 57 ---MRLLVHSGCFKKTKVNGEEE------AYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 107
+RLL H+G F KT V G+E AY LT S LLI KP CLS V + P
Sbjct: 66 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 125
Query: 108 VAPFQSLSSWF-KGTEITLWETVHGIKFWEFMNQNPAIN--QRFNEAMASDSEIMTTFVV 164
+ + S WF + E TL+E G FW+F+N++ + F +AMASDS + +V
Sbjct: 126 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LV 183
Query: 165 KSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 224
E K++FEGL SLVDVGGG G +++I E FP +KCTV D P V NL +NL ++ G
Sbjct: 184 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 243
Query: 225 DMFRFIPPADAFLFK 239
DMF+ IP ADA L K
Sbjct: 244 DMFKSIPSADAVLLK 258
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 19/198 (9%)
Query: 53 LSELMRLL----VHSGCFKKTKVNGEEEAYGLTAASTLLIKDKPYCLSPTVSVFV-DPFF 107
L ++RLL V + + + G E YGL+ L+ D+ + + F+ P
Sbjct: 85 LDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPAL 144
Query: 108 VAPFQSLSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSE 167
+ + + +I L++ VHG+ +EFM ++ +NQ FN++M V +E
Sbjct: 145 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD--------VCATE 196
Query: 168 CKQI------FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKY 221
K++ FEG+ +LVDVGGG+G +I +P IK DLP + N P +++
Sbjct: 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEH 256
Query: 222 IAGDMFRFIPPADAFLFK 239
+ GDMF +P DA + K
Sbjct: 257 VGGDMFASVPQGDAMILK 274
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 112/255 (43%), Gaps = 38/255 (14%)
Query: 16 QAQLYKLMFNHLS--SMSLKCAIELGIADIIHSHGRA--------------------ITL 53
+A L+ + S M LK A+EL + +II G + L
Sbjct: 18 EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVML 77
Query: 54 SELMRLL---VHSGCFKKTKVNGE-EEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVA 109
++RLL + C +T+ +G+ + YGL + L+K++ VS+
Sbjct: 78 DRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNED-----GVSISALNLMNQ 132
Query: 110 PFQSLSSWFKGTEITL-----WETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVV 164
+ SW+ + L + +G+ +E+ +P N+ FN+ M+ S I ++
Sbjct: 133 DKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKIL 192
Query: 165 KSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 224
E FEGL SLVDVGGG G I +P IK DLPH + + P ++++ G
Sbjct: 193 --ETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGG 250
Query: 225 DMFRFIPPADAFLFK 239
DMF IP ADA K
Sbjct: 251 DMFVSIPKADAVFMK 265
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 36/239 (15%)
Query: 30 MSLKCAIELGIADI-IHSHGRAITLSE-------------------LMRLLVHSG---CF 66
M+LK AIELG+ +I + + G+++T +E ++RLL C
Sbjct: 35 MTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94
Query: 67 KKTKVNGE-EEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTEITL 125
+ +G +YG L ++ VS+ + SW+ + L
Sbjct: 95 VEEGKDGRLSRSYGAAPVCKFLTPNED-----GVSMAALALMNQDKVLMESWYYLKDAVL 149
Query: 126 -----WETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSLVD 180
+ +G+ +E+ +P N+ FNE M + S I+T ++ E FEGLG+LVD
Sbjct: 150 DGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL--ELYHGFEGLGTLVD 207
Query: 181 VGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIPPADAFLFK 239
VGGG G I+ +P IK DLPH ++ P+ + ++ GDMF+ +P D L K
Sbjct: 208 VGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMK 266
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 39/241 (16%)
Query: 30 MSLKCAIELGIADIIHSH---------------------GRAITLSELMRLL----VHSG 64
M+LK AIEL + +I+ + L ++RLL V +
Sbjct: 36 MALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTY 95
Query: 65 CFKKTKVNGEEEAYGLTAASTLLIKDK------PYCLSPTVSVFVDPFFVAPFQSLSSWF 118
++ E YGL L K++ P+ L T V ++P+F L
Sbjct: 96 TLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI 155
Query: 119 KGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSL 178
+ +G+ +++ + IN+ FN+ M+S+S I ++ E FEGL ++
Sbjct: 156 P------FNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL--EMYNGFEGLTTI 207
Query: 179 VDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIPPADAFLF 238
VDVGGG G + +I +P I DLPH + + P ++++ GDMF +P DA
Sbjct: 208 VDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFI 267
Query: 239 K 239
K
Sbjct: 268 K 268
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 15/174 (8%)
Query: 73 GEEEAYGLTAASTLLIKDKPYCLSPTVSVFV-DPFFVAPFQSLSSWFKGTEITLWETVHG 131
G E YGL+ L+ D+ + + F+ P + + + +I L++ VHG
Sbjct: 109 GAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHG 168
Query: 132 IKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQI------FEGLGSLVDVGGGN 185
+ +EF ++ NQ FN++ V +E K+ FEG+ +LVDVGGG+
Sbjct: 169 VTKYEFXGKDKKXNQIFNKSXVD--------VCATEXKRXLEIYTGFEGISTLVDVGGGS 220
Query: 186 GTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIPPADAFLFK 239
G +I +P IK DLP + N P ++++ GD F +P DA + K
Sbjct: 221 GRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILK 274
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 31/233 (13%)
Query: 29 SMSLKCAIELGIADIIHSHGRAITLSELMRLLVHSGCFKKTKVN--------------GE 74
+ ++ A+ELG+ +++ R T L +G ++T G
Sbjct: 52 ARAIHVAVELGVPELLQEGPRTATA-----LAEATGAHEQTLRRLLRLLATVGVFDDLGH 106
Query: 75 EEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTEITLWETVHGIKF 134
++ + A S +L+ D ++ P+ ++ L+ + E + + +G F
Sbjct: 107 DDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASF-DVANGTSF 165
Query: 135 WEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISE 194
W+ +++P + FN A S + T + F G + VD+GGG G+ + +
Sbjct: 166 WQLTHEDPKARELFNRAXGS---VSLTEAGQVAAAYDFSGAATAVDIGGGRGSLXAAVLD 222
Query: 195 AFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMFRFIPP-ADAFLFK 239
AFPG++ T+L+ P E AD + + GD F IP AD +L K
Sbjct: 223 AFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIK 275
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 34/242 (14%)
Query: 18 QLYKLMFNHLSSMSLKCAIELGIADIIHSH------------GRAITLSELMRLLVHSGC 65
L +++ S + A LG+AD+I S A + LMRLLV
Sbjct: 11 NLIQVVTGEWKSRCVYVATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEI 70
Query: 66 FKKTKVNGEEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTEITL 125
F+ +G Y T S LL +D V + + F A + + GT
Sbjct: 71 FQGDTRDG----YANTPTSHLL-RDVEGSFRDMVLFYGEEFHAAWTPACEALLSGT--PG 123
Query: 126 WETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFEGLG-SLVDVGGG 184
+E G F+ ++ + P +RF AM + + + E ++ + G S VDVGGG
Sbjct: 124 FELAFGEDFYSYLKRCPDAGRRFLLAMKASN------LAFHEIPRLLDFRGRSFVDVGGG 177
Query: 185 NGTFSRIISEAFPGIKCTVLDLPHA-------VANLPEADNLKYIAGDMFRFIPP-ADAF 236
+G ++ I +A P + +LD + +++L + + + GDM + +P D +
Sbjct: 178 SGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIY 237
Query: 237 LF 238
L
Sbjct: 238 LL 239
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 14/192 (7%)
Query: 53 LSELMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQ 112
L ++RLL +++ + + LT L D P + F D F
Sbjct: 72 LRRVLRLLAVRDVVRES-----DGRFALTDKGAALRSDSPVPARAGILXFTDTXFWTXSH 126
Query: 113 SLSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIF 172
++S G E + + G + + + + + E + S + ++ F
Sbjct: 127 RVASAL-GPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHLILARAGD---F 182
Query: 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVA----NLPE-ADNLKYIAGDMF 227
G++ DVGGG G F + PG++ +LD VA + P+ A K + GD
Sbjct: 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL 242
Query: 228 RFIPPADAFLFK 239
R +P AD + K
Sbjct: 243 REVPHADVHVLK 254
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 125 LWETVHGIKFWEFMNQNPAI----NQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSLVD 180
L + V G K ++ P + N F E S+++ +++ E K +G+ ++D
Sbjct: 140 LSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE-EAK--LDGVKKMID 196
Query: 181 VGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMFR-FIPP 232
VGGG G S + + FP + T+L+LP A+ + E AD ++ IA D+++ P
Sbjct: 197 VGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 256
Query: 233 ADAFLF 238
ADA LF
Sbjct: 257 ADAVLF 262
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 178 LVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVA------NLPEADNLKYIAGDMFRF-I 230
+ D+GGG G ++ +PG K TV D+P V + E + + + GD F+ +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 231 PPADAFLF 238
P AD ++
Sbjct: 243 PEADLYIL 250
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 130 HGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSLVDVGGGNGTFS 189
+G FWE ++ + A+ F+ M+ D ++ + ++ + + ++DVGGGNG
Sbjct: 141 YGRPFWEDLSADVALADSFDALMSCDEDL--AYEAPADAYD-WSAVRHVLDVGGGNGGML 197
Query: 190 RIISEAFPGIKCTVLDLP-------HAVANLPEADNLKYIAGDMFRFIP 231
I+ P ++ T+++L A+ AD + GD F+ +P
Sbjct: 198 AAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLP 246
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 19 LYKLMFNHLSSMSLKCAIELGIADIIHSHGRAITLSELMRLLVHSGCFKKTKVNGEEEAY 78
L + F HL+ L C I++G +D G + ELMR ++ G+ +AY
Sbjct: 173 LQAIDFGHLNR-ELNCKIQVGGSD---QWGNITSGIELMR-----------RMYGQTDAY 217
Query: 79 GLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTEITLWETVHGIKFWEFM 138
GLT K + S + +V++D +P++ W ++ + + +K++ F+
Sbjct: 218 GLTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEFYQFWINQSD---EDVIKFLKYFTFL 274
Query: 139 NQNP--AINQRFNEA 151
+ + Q NEA
Sbjct: 275 GKEEIDRLEQSKNEA 289
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 144 INQRFNEAMASDSEIMTTFVVKSE-------CKQIFEGLG--SLVDVGGGNGTFSRIISE 194
++ + A+AS +E++ V + C + F+ LG ++++V G GT + +
Sbjct: 220 VSNKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPG-GTLTGLAKR 278
Query: 195 AFPGIKCTVLDLP 207
A PG+K L P
Sbjct: 279 ALPGVKTLALKTP 291
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 144 INQRFNEAMASDSEIMTTFVVKSE-------CKQIFEGLG--SLVDVGGGNGTFSRIISE 194
++ + A+AS +E++ V + C + F+ LG ++++V G GT + +
Sbjct: 230 VSNKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPG-GTLTGLAKR 288
Query: 195 AFPGIKCTVLDLP 207
A PG+K L P
Sbjct: 289 ALPGVKTLALKTP 301
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 144 INQRFNEAMASDSEIMTTFVVKSE-------CKQIFEGLG--SLVDVGGGNGTFSRIISE 194
++ + A+AS +E++ V + C + F+ LG ++++V G GT + +
Sbjct: 219 VSNKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPG-GTLTGLAKR 277
Query: 195 AFPGIKCTVLDLP 207
A PG+K L P
Sbjct: 278 ALPGVKTLALKTP 290
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 26/151 (17%)
Query: 30 MSLKCAIELGIADIIHSHGR------------AITLSELMRLLVHSGCFKKTKVNGEEEA 77
M+++ A L +AD I + R A +L L+R LV G F + +
Sbjct: 20 MAVRVAATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG----QGV 75
Query: 78 YGLTAASTLLIKD----KPYCLSPTVSVFV-DPFFVAPFQSLSSWFKGTEITLWETVHGI 132
YGLT L D K L +V D FV S+ T + +G
Sbjct: 76 YGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIR-----TGQPAYPVRYGT 130
Query: 133 KFWEFMNQNPAINQRFNEAMASDSEIMTTFV 163
FWE + +P ++ F+ M+ E+ T +
Sbjct: 131 SFWEDLGSDPVLSASFDTLMSHHLELDYTGI 161
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 85 TLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTEI 123
T I PY LSPT +D FV Q SS F+G +I
Sbjct: 271 TFTINGVPYTLSPTAYTLLD--FVDGMQFCSSGFQGLDI 307
>pdb|2LLG|A Chain A, Nmr Structure Of The Protein Np_814968.1 From Enterococcus
Faecalis
Length = 143
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 109 APFQSLSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMASDSE 157
+PFQ EI ET+ G +EF+N+N ++ +F + + S E
Sbjct: 86 SPFQDKLDRL-ADEINPGETIQGAYPYEFINENKPVHFKFRDRLLSLDE 133
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 178 LVDVGGGNGTFSRIISEAFPGIKCTVLDL 206
++DVG G+G + I+ A PG+ T +DL
Sbjct: 34 VIDVGTGSGCIAVSIALACPGVSVTAVDL 62
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 178 LVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEAD-----NLKYIAGDMFRF 229
++D+G G G S + E +P T++D+ + + + +KYI D ++
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY 104
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 126 WETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSLVDVGGGN 185
+E+++G F+E + P + F+ +A D ++ F + + + ++DVGGG
Sbjct: 138 YESIYGKPFYEDLAGRPDLRASFDSLLACDQDV--AFDAPAAAYD-WTNVRHVLDVGGGK 194
Query: 186 GTFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMFRFIP-PADAFL 237
G F+ I+ P + TVL++ V +D + + GD F +P ADA +
Sbjct: 195 GGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAII 254
Query: 238 F 238
Sbjct: 255 L 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,000,130
Number of Sequences: 62578
Number of extensions: 273326
Number of successful extensions: 600
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 31
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)